Citrus Sinensis ID: 023543
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | 2.2.26 [Sep-21-2011] | |||||||
| Q8WXB1 | 218 | Protein-lysine methyltran | yes | no | 0.597 | 0.770 | 0.383 | 1e-22 | |
| A4FV98 | 226 | Protein-lysine methyltran | yes | no | 0.576 | 0.716 | 0.367 | 1e-20 | |
| Q96AZ1 | 226 | Protein-lysine methyltran | no | no | 0.562 | 0.699 | 0.364 | 3e-20 | |
| Q8C436 | 228 | Protein-lysine methyltran | no | no | 0.644 | 0.793 | 0.388 | 4e-20 | |
| Q28IN4 | 224 | Protein-lysine methyltran | no | no | 0.583 | 0.732 | 0.353 | 4e-20 | |
| A4IGU3 | 215 | Protein-lysine methyltran | no | no | 0.597 | 0.781 | 0.353 | 3e-19 | |
| Q5RE14 | 236 | Protein-lysine methyltran | no | no | 0.597 | 0.711 | 0.349 | 4e-19 | |
| Q9CQL0 | 218 | Protein-lysine methyltran | no | no | 0.491 | 0.633 | 0.428 | 1e-18 | |
| Q9H867 | 229 | Protein-lysine methyltran | no | no | 0.654 | 0.803 | 0.348 | 2e-18 | |
| A4FV42 | 218 | Protein-lysine methyltran | no | no | 0.487 | 0.628 | 0.405 | 8e-18 |
| >sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGL 135
H++ I Q LG +V+WD+ +VL +LE G + L G+ VELG+G GL
Sbjct: 27 ANHTIQIRQDWRHLGV----AAVVWDAAIVLSTYLE----MGAVELRGRSAVELGAGTGL 78
Query: 136 VGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195
VG +AALLGA V +TD L LK N++ NL ++ VV ELTWG Q+L
Sbjct: 79 VGIVAALLGAHVTITDRKVALEFLKSNVQANLP-PHIQTKTVVKELTWG----QNLGSFS 133
Query: 196 P---DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFV 252
P D +LG+D+IY E DLL TL LC + I LA +R + FL + F
Sbjct: 134 PGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILLACRIRYERD-NNFLAMLERQFT 192
Query: 253 IGRVE 257
+ +V
Sbjct: 193 VRKVH 197
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|A4FV98|MT21B_BOVIN Protein-lysine methyltransferase METTL21B OS=Bos taurus GN=METTL21B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 95/174 (54%), Gaps = 12/174 (6%)
Query: 72 RIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGS 131
R CGH L+I ++ G+ + +WD+ + L + E S + GKK++ELG+
Sbjct: 32 RFCFCGHVLNITEN---FGSRLGVAARVWDAALSLCNYFE----SQNVDFRGKKVIELGA 84
Query: 132 GCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL 191
G G+VG +AAL G V +TDLP L ++ N++ N+ G G A V L+WG DQ +
Sbjct: 85 GTGIVGILAALQGGDVTITDLPLVLEQIQGNVQANVPPG---GRAQVRALSWGI--DQHV 139
Query: 192 IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLE 245
D VLG+D++Y E LL TL LCG TI+LA ++R + E F +
Sbjct: 140 FPGDYDLVLGADIVYLEPTFPLLLGTLRHLCGPHGTIYLASKMREEHGTESFFQ 193
|
Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q96AZ1|MT21B_HUMAN Protein-lysine methyltransferase METTL21B OS=Homo sapiens GN=METTL21B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGL 135
CGH L+I Q+ G+ + +WD+ + L + E S + GKK++ELG+G G+
Sbjct: 36 CGHVLTITQN---FGSRLGVAARVWDAALSLCNYFE----SQNVDFRGKKVIELGAGTGI 88
Query: 136 VGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195
VG +AAL G V +TDLP L ++ N++ N+ G G A V L+WG D +
Sbjct: 89 VGILAALQGGDVTITDLPLALEQIQGNVQANVPAG---GQAQVRALSWGI--DHHVFPAN 143
Query: 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLE 245
D VLG+D++Y E LL TL LC TI+LA ++R + E F +
Sbjct: 144 YDLVLGADIVYLEPTFPLLLGTLQHLCRPHGTIYLASKMRKEHGTESFFQ 193
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8C436|MT21D_MOUSE Protein-lysine methyltransferase METTL21D OS=Mus musculus GN=Mettl21d PE=2 SV=2 | Back alignment and function description |
|---|
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 105/193 (54%), Gaps = 12/193 (6%)
Query: 93 GVTGSVMWDSGVVLGKFLEHAVDSG--MLLLHGKKIVELGSGCGLVGCIAALLGAQVILT 150
G G V+WD+ +VL K+LE SG L + ++ELGSG G VG +AA LGA VI+T
Sbjct: 36 GGVGCVVWDAAIVLSKYLETPGFSGDGAHALSRRSVLELGSGTGAVGLMAATLGADVIVT 95
Query: 151 DLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA 210
DL + LLK NI+ N +H + GS L WG+D +DL+ PDY+L +D IY E +
Sbjct: 96 DLEELQDLLKMNIDMN-KHL-VTGSVQAKVLKWGEDI-EDLMS--PDYILMADCIYYEES 150
Query: 211 VGDLLDTLLQLCGTQTTIFLAGELR----NDSVLEYFLEAAMKDFVIGRVEQTQWHPDYC 266
+ LL TL L G++T I E R N + + + E DF + + +Y
Sbjct: 151 LEPLLKTLKDLSGSETCIICCYEQRTMGKNPEIEKKYFELLQLDFDFEEIPLDKHDEEYR 210
Query: 267 SPRV-VVYILVKK 278
S + +VYI KK
Sbjct: 211 SEDIHIVYIRKKK 223
|
Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q28IN4|MT21B_XENTR Protein-lysine methyltransferase METTL21B OS=Xenopus tropicalis GN=mettl21b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 94/178 (52%), Gaps = 14/178 (7%)
Query: 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVL-GKFLEHAVDSGMLLLHGKKIVELGSGCG 134
CG L I Q + GV V WD+ + L G F E +D GKK++ELG+G G
Sbjct: 37 CGTELRITQHYGA--NLGVAAPV-WDAALFLCGYFEEQKLD-----FKGKKVIELGAGTG 88
Query: 135 LVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194
+VG + +LLG V LTDLP L ++KN+ N+ + V L+WG DQ+
Sbjct: 89 IVGILVSLLGGHVTLTDLPHALSQIQKNVSANVSSNN---PPQVCALSWG--LDQEKFPQ 143
Query: 195 LPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFV 252
D+VLG+D++Y L+ TL LCG QT+IFL+ ++R + +F + + +
Sbjct: 144 DYDFVLGADIVYLHDTYPLLIQTLQYLCGPQTSIFLSSKMRQEHGTMHFFQDILPQYF 201
|
Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 92/181 (50%), Gaps = 13/181 (7%)
Query: 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGL 135
H++ I Q LG +V+WD+ +VL +LE S + L ++ELG+G GL
Sbjct: 27 VNHNIEIKQDWKQLGV----AAVVWDAALVLCMYLE----SEGIHLQNSSVIELGAGTGL 78
Query: 136 VGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195
VG +AALLGAQV +TD + L+ N+ +N+ L + V L WG ++
Sbjct: 79 VGIVAALLGAQVTITDRDLAMEFLRMNVRDNIPKDSLHRVS-VRALNWGKSLEE---FST 134
Query: 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGR 255
D++LG+D+IY E DLL T L L Q+ I L+ LR + FLE F I
Sbjct: 135 YDFILGADIIYLEETFPDLLQTFLHLSSQQSVILLSSRLRYQRDHD-FLEMMKLHFTIAD 193
Query: 256 V 256
V
Sbjct: 194 V 194
|
Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5RE14|MT21A_PONAB Protein-lysine methyltransferase METTL21A OS=Pongo abelii GN=METTL21A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 97/203 (47%), Gaps = 35/203 (17%)
Query: 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGL 135
H++ I Q LG +V+WD+ +VL +LE G + L G+ VELG+G GL
Sbjct: 27 ANHTIQIRQDWRHLGV----AAVVWDAAIVLSTYLE----MGAVELRGRSAVELGAGTGL 78
Query: 136 VGCIAALL------------------GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAV 177
VG +AALL GA V +TD L LK N++ NL ++ V
Sbjct: 79 VGIVAALLALKSSMKPLLVHCLLFFSGAHVTITDRKVALEFLKSNVQANLP-PHIQPKTV 137
Query: 178 VTELTWGDDPDQDLIQPLP---DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234
V ELTWG Q+L P D +LG+D+IY E DLL TL LC + I LA +
Sbjct: 138 VKELTWG----QNLGSFSPGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILLACRI 193
Query: 235 RNDSVLEYFLEAAMKDFVIGRVE 257
R + FL + F + +V
Sbjct: 194 RYERD-NNFLAMLERQFTVRKVH 215
|
Probable methyltransferase. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9CQL0|MT21A_MOUSE Protein-lysine methyltransferase METTL21A OS=Mus musculus GN=Mettl21A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 81/147 (55%), Gaps = 9/147 (6%)
Query: 114 VDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLR 173
++ G + L G VELG+G GLVG +AALLGAQV +TD L LK N+E NL ++
Sbjct: 57 LEMGAVELRGCSAVELGAGTGLVGIVAALLGAQVTITDRKVALEFLKSNVEANLP-PHIQ 115
Query: 174 GSAVVTELTWGDDPDQDLIQPLP---DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFL 230
AVV ELTWG Q+L P D +LG+DVIY E DLL TL LC + I L
Sbjct: 116 PKAVVKELTWG----QNLESFSPGEFDLILGADVIYLEDTFTDLLQTLGHLCSNNSVILL 171
Query: 231 AGELRNDSVLEYFLEAAMKDFVIGRVE 257
A +R + FL + F + +V
Sbjct: 172 ACRIRYERD-SNFLTMLERQFTVSKVH 197
|
Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9H867|MT21D_HUMAN Protein-lysine methyltransferase METTL21D OS=Homo sapiens GN=METTL21D PE=1 SV=2 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 102/195 (52%), Gaps = 11/195 (5%)
Query: 91 TPGVTGSVMWDSGVVLGKFLEHAVDSG--MLLLHGKKIVELGSGCGLVGCIAALLGAQVI 148
+ G G V+WD+ +VL K+LE SG L + ++ELGSG G VG +AA LGA V+
Sbjct: 34 SSGGVGCVVWDAAIVLSKYLETPEFSGDGAHALSRRSVLELGSGTGAVGLMAATLGADVV 93
Query: 149 LTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE 208
+TDL + LLK NI N+ + GS L WG++ + P PD++L +D IY E
Sbjct: 94 VTDLEELQDLLKMNI--NMNKHLVTGSVQAKVLKWGEEI-EGFPSP-PDFILMADCIYYE 149
Query: 209 GAVGDLLDTLLQLCGTQTTIFLAGELR----NDSVLEYFLEAAMKDFVIGRVEQTQWHPD 264
++ LL TL + G +T I E R N + + + E DF ++ + +
Sbjct: 150 ESLEPLLKTLKDISGFETCIICCYEQRTMGKNPEIEKKYFELLQLDFDFEKIPLEKHDEE 209
Query: 265 YCSPRV-VVYILVKK 278
Y S + ++YI KK
Sbjct: 210 YRSEDIHIIYIRKKK 224
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A4FV42|MT21A_BOVIN Protein-lysine methyltransferase METTL21A OS=Bos taurus GN=METTL21A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 83/148 (56%), Gaps = 11/148 (7%)
Query: 114 VDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLR 173
++ G + L G VELG+G GLVG +AALLGA V +TD L LK N++ NL ++
Sbjct: 57 LEMGTVELRGCSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKSNVQANLP-PHIQ 115
Query: 174 GSAVVTELTWGDDPDQDLIQPLP---DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFL 230
AVV ELTWG Q+L + P D +LG+D+IY E DLL TL LC + + L
Sbjct: 116 PKAVVKELTWG----QNLGRFSPGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVVLL 171
Query: 231 AGELRNDSVLEY-FLEAAMKDFVIGRVE 257
A +R + +Y FL + F + +V
Sbjct: 172 ACRIRYER--DYNFLAMLERQFTVSKVH 197
|
Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | ||||||
| 224116486 | 260 | predicted protein [Populus trichocarpa] | 0.925 | 1.0 | 0.825 | 1e-125 | |
| 225454571 | 268 | PREDICTED: methyltransferase-like protei | 0.907 | 0.951 | 0.806 | 1e-118 | |
| 356559296 | 271 | PREDICTED: uncharacterized protein LOC10 | 0.914 | 0.948 | 0.793 | 1e-117 | |
| 357498989 | 268 | Protein FAM119A [Medicago truncatula] gi | 0.914 | 0.958 | 0.804 | 1e-117 | |
| 388492038 | 268 | unknown [Medicago truncatula] | 0.914 | 0.958 | 0.804 | 1e-117 | |
| 255557122 | 234 | conserved hypothetical protein [Ricinus | 0.793 | 0.952 | 0.843 | 1e-107 | |
| 297842081 | 309 | hypothetical protein ARALYDRAFT_476461 [ | 0.978 | 0.889 | 0.698 | 1e-105 | |
| 255628649 | 249 | unknown [Glycine max] | 0.836 | 0.943 | 0.782 | 1e-103 | |
| 79378845 | 316 | S-adenosylmethionine-dependent methyltra | 0.985 | 0.876 | 0.676 | 1e-103 | |
| 53828553 | 292 | At1g73320 [Arabidopsis thaliana] gi|5722 | 0.854 | 0.821 | 0.766 | 1e-103 |
| >gi|224116486|ref|XP_002331909.1| predicted protein [Populus trichocarpa] gi|222874581|gb|EEF11712.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/264 (82%), Positives = 239/264 (90%), Gaps = 4/264 (1%)
Query: 15 MMKMVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRID 74
M + +KLGSY GKVR+L + ESAA ETMLLWGIQQPT SKPN+FV+QSSL L +D
Sbjct: 1 MEEEIKLGSYGGKVRVL----RQDEESAAAETMLLWGIQQPTFSKPNSFVSQSSLQLNLD 56
Query: 75 ACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCG 134
ACGH LSILQSPSSL TPGVTGSVMWDSGVVLGKFLEHAVDSG+LLLHGKK+VELGSGCG
Sbjct: 57 ACGHYLSILQSPSSLSTPGVTGSVMWDSGVVLGKFLEHAVDSGLLLLHGKKVVELGSGCG 116
Query: 135 LVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194
LVGCIAALLGAQV LTDLPDRLRLLKKNIE NLRHG++RGSAVV EL WGDDPDQDLI P
Sbjct: 117 LVGCIAALLGAQVTLTDLPDRLRLLKKNIETNLRHGNVRGSAVVRELIWGDDPDQDLIVP 176
Query: 195 LPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIG 254
PDYVLGSDV+YSEGAV DLLDTL+QLCG QTTIFLAGELRND+VLEYFL+AAMK+FV+G
Sbjct: 177 FPDYVLGSDVVYSEGAVVDLLDTLVQLCGAQTTIFLAGELRNDAVLEYFLDAAMKEFVVG 236
Query: 255 RVEQTQWHPDYCSPRVVVYILVKK 278
RVEQT+WHP+YCSPRV +Y+LVKK
Sbjct: 237 RVEQTRWHPEYCSPRVAMYVLVKK 260
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454571|ref|XP_002263420.1| PREDICTED: methyltransferase-like protein 21A [Vitis vinifera] gi|297737205|emb|CBI26406.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/259 (80%), Positives = 231/259 (89%), Gaps = 4/259 (1%)
Query: 20 KLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHS 79
K+G Y G V + + G SESAAEET++LW QQPT S+ NAFV+QSSL+L +DACGHS
Sbjct: 9 KMGGYGGMVSV-VAEG---SESAAEETLMLWCTQQPTYSQHNAFVSQSSLSLHLDACGHS 64
Query: 80 LSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCI 139
LSI QSPSSLG PGVTGSVMWDSGVVLGKFLEHAVDSG+LLL GKK+VELGSGCGLVGCI
Sbjct: 65 LSIFQSPSSLGKPGVTGSVMWDSGVVLGKFLEHAVDSGLLLLQGKKVVELGSGCGLVGCI 124
Query: 140 AALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199
AALLGAQV LTDLPDRLRLLKKN+E NL+ GDLRGSA V ELTWGDDP+ +LI+PLPDYV
Sbjct: 125 AALLGAQVFLTDLPDRLRLLKKNVETNLKQGDLRGSATVHELTWGDDPEPELIEPLPDYV 184
Query: 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQT 259
LGSDVIYSEGAV DLL TL+QLCG QTTI LAGELRNDS+LEYFLEAAMKDF++GRV+QT
Sbjct: 185 LGSDVIYSEGAVADLLVTLMQLCGAQTTIVLAGELRNDSILEYFLEAAMKDFMVGRVDQT 244
Query: 260 QWHPDYCSPRVVVYILVKK 278
QWHPDYCSPRVV+YILVKK
Sbjct: 245 QWHPDYCSPRVVIYILVKK 263
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559296|ref|XP_003547936.1| PREDICTED: uncharacterized protein LOC100306471 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/261 (79%), Positives = 234/261 (89%), Gaps = 4/261 (1%)
Query: 18 MVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACG 77
MVKLGSY G+VRL +V G+ ESAAEETMLLWGIQQPTLSKPNAFV+Q+SL L +D+CG
Sbjct: 15 MVKLGSYGGEVRL-VVGGE---ESAAEETMLLWGIQQPTLSKPNAFVSQASLQLSLDSCG 70
Query: 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
HSLSILQSPSSLGTPGVTG+VMWDSGVVLGKFLEHAVDSGML+L GKKIVELGSGCGLVG
Sbjct: 71 HSLSILQSPSSLGTPGVTGAVMWDSGVVLGKFLEHAVDSGMLVLQGKKIVELGSGCGLVG 130
Query: 138 CIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197
CIA LLG++VI+TDLPDRLRLL+KNIE N++H LRGS TELTWG+DPD +LI P PD
Sbjct: 131 CIATLLGSEVIVTDLPDRLRLLRKNIETNMKHVSLRGSVTATELTWGEDPDPELIDPKPD 190
Query: 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVE 257
+V+GSDV+YSEGAV DLL+TL+QL G TTIFLAGELRND++LEYFLEAAM +F IGRVE
Sbjct: 191 FVIGSDVVYSEGAVVDLLETLMQLSGPNTTIFLAGELRNDAILEYFLEAAMDNFTIGRVE 250
Query: 258 QTQWHPDYCSPRVVVYILVKK 278
QT WHPDYCS RVV+Y+LVKK
Sbjct: 251 QTLWHPDYCSNRVVIYVLVKK 271
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357498989|ref|XP_003619783.1| Protein FAM119A [Medicago truncatula] gi|355494798|gb|AES76001.1| Protein FAM119A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/261 (80%), Positives = 232/261 (88%), Gaps = 4/261 (1%)
Query: 18 MVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACG 77
MVKLGSY G V +L+V G+ ESAAEETMLLWGIQQPTLSKPNAFVAQSSL LR+D+CG
Sbjct: 12 MVKLGSYGGSV-MLVVPGE---ESAAEETMLLWGIQQPTLSKPNAFVAQSSLQLRLDSCG 67
Query: 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
HSLSILQSPSSLG PGVTGSVMWDSG+VLGKFLEH+VDSGML+L GKKIVELGSGCGLVG
Sbjct: 68 HSLSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQGKKIVELGSGCGLVG 127
Query: 138 CIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197
CIAALLG +VILTDLPDR+RLL+KNIE N++H LRGS TELTWGDDPDQ+LI P PD
Sbjct: 128 CIAALLGGEVILTDLPDRMRLLRKNIETNMKHISLRGSITATELTWGDDPDQELIDPTPD 187
Query: 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVE 257
Y+LGSDV+YSEGAV DLL+TL QL G TTIFLAGELRND++LEYFLEAAM DF IGRV+
Sbjct: 188 YILGSDVVYSEGAVVDLLETLGQLSGPNTTIFLAGELRNDAILEYFLEAAMNDFTIGRVD 247
Query: 258 QTQWHPDYCSPRVVVYILVKK 278
QT WHPDY S RVV+Y+LVKK
Sbjct: 248 QTLWHPDYHSNRVVLYVLVKK 268
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388492038|gb|AFK34085.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/261 (80%), Positives = 231/261 (88%), Gaps = 4/261 (1%)
Query: 18 MVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACG 77
MVKLGSY G V +L+V G+ ESAAEETMLLWGIQQPTLSKPNAFVAQSSL LR+D+CG
Sbjct: 12 MVKLGSYGGSV-MLVVPGE---ESAAEETMLLWGIQQPTLSKPNAFVAQSSLQLRLDSCG 67
Query: 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
HSLSILQSPSSLG PGVTGSVMWDSG+VLGKFLEH+VDSGML+L GKKIVELGSGCGLVG
Sbjct: 68 HSLSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQGKKIVELGSGCGLVG 127
Query: 138 CIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197
CIAALLG +VILTDLPDR+RLL+KNIE N++H LRGS TELTWGDDPDQ+LI P PD
Sbjct: 128 CIAALLGGEVILTDLPDRMRLLRKNIETNMKHISLRGSITATELTWGDDPDQELIGPTPD 187
Query: 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVE 257
Y+LGSDV+YSEGAV DLL+TL QL G TTIFLAGELRND++LEYFLEAAM DF IGRV+
Sbjct: 188 YILGSDVVYSEGAVVDLLETLGQLSGPNTTIFLAGELRNDAILEYFLEAAMNDFTIGRVD 247
Query: 258 QTQWHPDYCSPRVVVYILVKK 278
QT WHPDY S RVV Y+LVKK
Sbjct: 248 QTLWHPDYHSNRVVFYVLVKK 268
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557122|ref|XP_002519593.1| conserved hypothetical protein [Ricinus communis] gi|223541251|gb|EEF42804.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/223 (84%), Positives = 205/223 (91%)
Query: 47 MLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVL 106
MLLWGIQQPTLS PN+FV+QSSL LRIDACGHSLSILQSPSSLG PGVTGSVMWDSGV+L
Sbjct: 1 MLLWGIQQPTLSAPNSFVSQSSLQLRIDACGHSLSILQSPSSLGKPGVTGSVMWDSGVIL 60
Query: 107 GKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENN 166
GKFLEHAVDS ML+L GKKIVELG+GCGLVGCIAA LGAQV LTDLPDRLRLL+KNIE N
Sbjct: 61 GKFLEHAVDSKMLILQGKKIVELGAGCGLVGCIAAFLGAQVTLTDLPDRLRLLRKNIEAN 120
Query: 167 LRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQT 226
L HG++RGSAVV EL WGD+P+ DLI+ LPDY+LGSD++YSEGAV DLLDTL QL GTQT
Sbjct: 121 LTHGNVRGSAVVKELIWGDEPESDLIELLPDYILGSDIVYSEGAVVDLLDTLTQLSGTQT 180
Query: 227 TIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCSPR 269
TIFLAGELRND++LEYFLEAAMKDFVIGRVEQ+QWHPDY S R
Sbjct: 181 TIFLAGELRNDAILEYFLEAAMKDFVIGRVEQSQWHPDYSSHR 223
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842081|ref|XP_002888922.1| hypothetical protein ARALYDRAFT_476461 [Arabidopsis lyrata subsp. lyrata] gi|297334763|gb|EFH65181.1| hypothetical protein ARALYDRAFT_476461 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/285 (69%), Positives = 226/285 (79%), Gaps = 10/285 (3%)
Query: 5 AEVETEEETEMMKMVKLGSYDGKVRLLIVSG--------DSESESAAEETMLLWGIQQPT 56
AE EE+ + ++ ++ Y G V ++V G +SES+ AA E M++W IQ PT
Sbjct: 15 AEKMDEEDETVEEIRQMSGYGGDV--IVVGGFPAAESESESESDLAAAEIMVIWAIQGPT 72
Query: 57 LSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDS 116
PNA VAQSSL LR+DACGHSLSILQSP SL TPGVTGSVMWDSGVVLGKFLEH+VDS
Sbjct: 73 SFAPNALVAQSSLELRLDACGHSLSILQSPCSLNTPGVTGSVMWDSGVVLGKFLEHSVDS 132
Query: 117 GMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSA 176
+L L GKKIVELGSGCGLVGCIAALLG V+LTDLPDRLRLLKKNI+ NL G+ RGSA
Sbjct: 133 KVLSLEGKKIVELGSGCGLVGCIAALLGGNVVLTDLPDRLRLLKKNIQTNLHRGNTRGSA 192
Query: 177 VVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN 236
V EL WGDDPD DLI+P PDYVLGSDVIYSE AV L+ TLLQLCG QTTIFL+GELRN
Sbjct: 193 TVQELVWGDDPDPDLIEPFPDYVLGSDVIYSEEAVHHLVKTLLQLCGDQTTIFLSGELRN 252
Query: 237 DSVLEYFLEAAMKDFVIGRVEQTQWHPDYCSPRVVVYILVKKLEK 281
D+VLEYFLE A+KDF IGRVEQTQWHPDY S RVV+Y+L KK ++
Sbjct: 253 DAVLEYFLETALKDFAIGRVEQTQWHPDYHSRRVVLYVLEKKSKR 297
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255628649|gb|ACU14669.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/239 (78%), Positives = 213/239 (89%), Gaps = 4/239 (1%)
Query: 18 MVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACG 77
MVKLGSY G+VRL+ V G+ ESAAEETMLLWGIQQPTLSKPNAFV+Q+SL L +D+CG
Sbjct: 15 MVKLGSYGGEVRLM-VGGE---ESAAEETMLLWGIQQPTLSKPNAFVSQASLQLSLDSCG 70
Query: 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
HSLSILQSPSSLGTPGVTG+VMWDSGVVLGKFLEHAV+SGML+L GKKI ELGSGCGLVG
Sbjct: 71 HSLSILQSPSSLGTPGVTGAVMWDSGVVLGKFLEHAVNSGMLVLQGKKIAELGSGCGLVG 130
Query: 138 CIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197
CIAALLG++VI+TDLPDRLRLL+KNIE N++H LRGS TELTWG+DPD +LI P PD
Sbjct: 131 CIAALLGSEVIVTDLPDRLRLLRKNIETNMKHVSLRGSVTATELTWGEDPDPELIDPKPD 190
Query: 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRV 256
+V+GSDV+YSEGAV D L+TL+QL G TTIFLAGELRND++LEYFLEAAM +F IGRV
Sbjct: 191 FVIGSDVVYSEGAVVDPLETLMQLSGPNTTIFLAGELRNDAILEYFLEAAMDNFTIGRV 249
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79378845|ref|NP_177475.3| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|55978783|gb|AAV68853.1| hypothetical protein AT1G73320 [Arabidopsis thaliana] gi|61742556|gb|AAX55099.1| hypothetical protein At1g73320 [Arabidopsis thaliana] gi|332197320|gb|AEE35441.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/291 (67%), Positives = 226/291 (77%), Gaps = 14/291 (4%)
Query: 3 TAAEVETE----EETEMMKMVKLGSYDGKVRLLIVSG--------DSESESAAEETMLLW 50
+AA E E E+ + ++ ++ Y G V ++V G +SES+ AA E M++W
Sbjct: 16 SAARFEAEKMGKEDEAVEEIRRMSGYGGDV--IVVGGFPASESESESESDLAAAEIMVIW 73
Query: 51 GIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFL 110
IQ PT PN VAQSSL LR+DACGHSLSILQSP SL TPGVTGSVMWDSGVVLGKFL
Sbjct: 74 AIQGPTSFAPNTLVAQSSLELRLDACGHSLSILQSPCSLNTPGVTGSVMWDSGVVLGKFL 133
Query: 111 EHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHG 170
EH+VDS +L L GKKIVELGSGCGLVGCIAALLG +LTDLPDRLRLLKKNI+ NL G
Sbjct: 134 EHSVDSKVLSLEGKKIVELGSGCGLVGCIAALLGGNAVLTDLPDRLRLLKKNIQTNLHRG 193
Query: 171 DLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFL 230
+ RGSA+V EL WGDDPD DLI+P PDYVLGSDVIYSE AV L+ TLLQLC QTTIFL
Sbjct: 194 NTRGSAIVQELVWGDDPDPDLIEPFPDYVLGSDVIYSEEAVHHLVKTLLQLCSDQTTIFL 253
Query: 231 AGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCSPRVVVYILVKKLEK 281
+GELRND+VLEYFLE A+KDF IGRVEQTQWHPDY S RVV+Y+L KK ++
Sbjct: 254 SGELRNDAVLEYFLETALKDFAIGRVEQTQWHPDYRSHRVVLYVLEKKSKR 304
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|53828553|gb|AAU94386.1| At1g73320 [Arabidopsis thaliana] gi|57222202|gb|AAW39008.1| At1g73320 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/240 (76%), Positives = 202/240 (84%)
Query: 42 AAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWD 101
AA E M++W IQ PT PN VAQSSL LR+DACGHSLSILQSP SL TPGVTGSVMWD
Sbjct: 41 AAAEIMVIWAIQGPTSFAPNTLVAQSSLELRLDACGHSLSILQSPCSLNTPGVTGSVMWD 100
Query: 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKK 161
SGVVLGKFLEH+VDS +L L GKKIVELGSGCGLVGCIAALLG +LTDLPDRLRLLKK
Sbjct: 101 SGVVLGKFLEHSVDSKVLSLEGKKIVELGSGCGLVGCIAALLGGNAVLTDLPDRLRLLKK 160
Query: 162 NIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQL 221
NI+ NL G+ RGSA+V EL WGDDPD DLI+P PDYVLGSDVIYSE AV L+ TLLQL
Sbjct: 161 NIQTNLHRGNTRGSAIVQELVWGDDPDPDLIEPFPDYVLGSDVIYSEEAVHHLVKTLLQL 220
Query: 222 CGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCSPRVVVYILVKKLEK 281
C QTTIFL+GELRND+VLEYFLE A+KDF IGRVEQTQWHPDY S RVV+Y+L KK ++
Sbjct: 221 CSDQTTIFLSGELRNDAVLEYFLETALKDFAIGRVEQTQWHPDYRSHRVVLYVLEKKSKR 280
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | ||||||
| TAIR|locus:2197234 | 316 | AT1G73320 "AT1G73320" [Arabido | 0.836 | 0.743 | 0.727 | 1.3e-86 | |
| MGI|MGI:1914349 | 218 | Mettl21a "methyltransferase li | 0.597 | 0.770 | 0.402 | 2.9e-23 | |
| UNIPROTKB|A4FV42 | 218 | METTL21A "Protein-lysine methy | 0.594 | 0.766 | 0.383 | 1.6e-22 | |
| RGD|1311824 | 218 | Mettl21a "methyltransferase li | 0.597 | 0.770 | 0.379 | 4.3e-22 | |
| ZFIN|ZDB-GENE-060825-19 | 223 | mettl21d "methyltransferase li | 0.647 | 0.816 | 0.355 | 4.3e-22 | |
| UNIPROTKB|Q8WXB1 | 218 | METTL21A "Protein-lysine methy | 0.597 | 0.770 | 0.374 | 5.5e-22 | |
| UNIPROTKB|I3LNJ7 | 226 | METTL21B "Uncharacterized prot | 0.604 | 0.752 | 0.369 | 1.7e-20 | |
| ZFIN|ZDB-GENE-040718-53 | 241 | zgc:92518 "zgc:92518" [Danio r | 0.494 | 0.576 | 0.416 | 1.7e-20 | |
| ZFIN|ZDB-GENE-050320-145 | 218 | mettl21a "methyltransferase li | 0.654 | 0.844 | 0.359 | 2.7e-20 | |
| MGI|MGI:2684917 | 228 | Mettl21d "methyltransferase li | 0.651 | 0.802 | 0.367 | 4.4e-20 |
| TAIR|locus:2197234 AT1G73320 "AT1G73320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 171/235 (72%), Positives = 188/235 (80%)
Query: 47 MLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVL 106
M++W IQ PT PN VAQSSL LR+DACGHSLSILQSP SL TPGVTGSVMWDSGVVL
Sbjct: 70 MVIWAIQGPTSFAPNTLVAQSSLELRLDACGHSLSILQSPCSLNTPGVTGSVMWDSGVVL 129
Query: 107 GKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENN 166
GKFLEH+VDS +L L GKKIVELGSGCGLVGCIAALLG +LTDLPDRLRLLKKNI+ N
Sbjct: 130 GKFLEHSVDSKVLSLEGKKIVELGSGCGLVGCIAALLGGNAVLTDLPDRLRLLKKNIQTN 189
Query: 167 LRHGDLRGSAVVTELTWGXXXXXXXXXXXXXYVLGSDVIYSEGAVGDLLDTLLQLCGTQT 226
L G+ RGSA+V EL WG YVLGSDVIYSE AV L+ TLLQLC QT
Sbjct: 190 LHRGNTRGSAIVQELVWGDDPDPDLIEPFPDYVLGSDVIYSEEAVHHLVKTLLQLCSDQT 249
Query: 227 TIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCSPRVVVYILVKKLEK 281
TIFL+GELRND+VLEYFLE A+KDF IGRVEQTQWHPDY S RVV+Y+L KK ++
Sbjct: 250 TIFLSGELRNDAVLEYFLETALKDFAIGRVEQTQWHPDYRSHRVVLYVLEKKSKR 304
|
|
| MGI|MGI:1914349 Mettl21a "methyltransferase like 21A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 72/179 (40%), Positives = 93/179 (51%)
Query: 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
H++ I Q LG +V+WD+ VVL +LE G + L G VELG+G GLVG
Sbjct: 29 HTIQIRQDWRQLGV----AAVVWDAAVVLSMYLE----MGAVELRGCSAVELGAGTGLVG 80
Query: 138 CIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGXXXXXXXXXXXXX 197
+AALLGAQV +TD L LK N+E NL ++ AVV ELTWG
Sbjct: 81 IVAALLGAQVTITDRKVALEFLKSNVEANLPP-HIQPKAVVKELTWGQNLESFSPGEFDL 139
Query: 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRV 256
+LG+DVIY E DLL TL LC + I LA +R + FL + F + +V
Sbjct: 140 -ILGADVIYLEDTFTDLLQTLGHLCSNNSVILLACRIRYERDSN-FLTMLERQFTVSKV 196
|
|
| UNIPROTKB|A4FV42 METTL21A "Protein-lysine methyltransferase METTL21A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 69/180 (38%), Positives = 94/180 (52%)
Query: 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
H++ I Q LG +V+WD+ VVL +LE G + L G VELG+G GLVG
Sbjct: 29 HTIQIRQDWKQLGV----AAVVWDAAVVLATYLE----MGTVELRGCSAVELGAGTGLVG 80
Query: 138 CIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGXXXXXXXXXXXXX 197
+AALLGA V +TD L LK N++ NL ++ AVV ELTWG
Sbjct: 81 IVAALLGAHVTITDRKVALEFLKSNVQANLPP-HIQPKAVVKELTWGQNLGRFSPGEFDL 139
Query: 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEY-FLEAAMKDFVIGRV 256
+LG+D+IY E DLL TL LC + + LA +R + +Y FL + F + +V
Sbjct: 140 -ILGADIIYLEETFTDLLQTLEHLCSNHSVVLLACRIRYER--DYNFLAMLERQFTVSKV 196
|
|
| RGD|1311824 Mettl21a "methyltransferase like 21A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 68/179 (37%), Positives = 91/179 (50%)
Query: 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
H++ I Q LG +V+WD+ +VL +LE G + L G VELG+G GLVG
Sbjct: 29 HTIQIRQDWGRLGV----AAVVWDAAIVLSTYLE----MGAVELRGCSAVELGAGTGLVG 80
Query: 138 CIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGXXXXXXXXXXXXX 197
+AALLGA V +TD L LK N+E NL ++ VV ELTWG
Sbjct: 81 IVAALLGAHVTITDRKVALEFLKSNVEANLPP-HIQPKVVVKELTWGQNLDSFSPGEFDL 139
Query: 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRV 256
+LG+D+IY E DLL TL LC + I LA +R + FL + F + +V
Sbjct: 140 -ILGADIIYLEDTFTDLLQTLGHLCSNNSVILLACRIRYERD-NNFLTMLERQFTVSKV 196
|
|
| ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 70/197 (35%), Positives = 102/197 (51%)
Query: 93 GVTGSVMWDSGVVLGKFLEH----AVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVI 148
G G V+WD+ +VL K+LE ++ SG+ + K I+ELG+G GLVG +AA LGA V
Sbjct: 31 GDVGCVVWDAAIVLSKYLETEQFCSIGSGVSMWSSKNIIELGAGTGLVGLVAASLGANVT 90
Query: 149 LTDLPDRLRLLKKNIENN--LRHGDLRGSAVVTELTWGXXXXXXXXXXXXXYVLGSDVIY 206
LTDL D LL+ NI+ N L H GS L WG Y+L +D IY
Sbjct: 91 LTDLEDLQPLLQLNIKKNQQLIH---TGSVTAKVLKWGANVDDFLPHPH--YILMADCIY 145
Query: 207 SEGAVGDLLDTLLQLCGTQTTIFLAGELR----NDSVLEYFLEAAMKDFVIGRVEQTQWH 262
E +V L++TL L G +T I E R N + + F E ++DF + +
Sbjct: 146 YEQSVEPLVETLKLLAGPETCIICCYEQRTVGVNPEIEKRFFELLLQDFQSEEISSEKQD 205
Query: 263 PDYCSPRVVVYILVKKL 279
P++ SP + + L +++
Sbjct: 206 PEFNSPDIHILHLRRRV 222
|
|
| UNIPROTKB|Q8WXB1 METTL21A "Protein-lysine methyltransferase METTL21A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 67/179 (37%), Positives = 92/179 (51%)
Query: 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
H++ I Q LG +V+WD+ +VL +LE G + L G+ VELG+G GLVG
Sbjct: 29 HTIQIRQDWRHLGV----AAVVWDAAIVLSTYLE----MGAVELRGRSAVELGAGTGLVG 80
Query: 138 CIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGXXXXXXXXXXXXX 197
+AALLGA V +TD L LK N++ NL ++ VV ELTWG
Sbjct: 81 IVAALLGAHVTITDRKVALEFLKSNVQANLPP-HIQTKTVVKELTWGQNLGSFSPGEFDL 139
Query: 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRV 256
+LG+D+IY E DLL TL LC + I LA +R + FL + F + +V
Sbjct: 140 -ILGADIIYLEETFTDLLQTLEHLCSNHSVILLACRIRYERD-NNFLAMLERQFTVRKV 196
|
|
| UNIPROTKB|I3LNJ7 METTL21B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 68/184 (36%), Positives = 93/184 (50%)
Query: 63 FVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHA-VDSGMLLL 121
F S R CGH LSI ++ S GV V WD+ + L + E VD
Sbjct: 23 FADSYSEKSRFCFCGHELSITENFGS--RLGVAARV-WDAALSLCNYFESQNVD-----F 74
Query: 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTEL 181
GKK++ELG+G G+VG +AAL G V +TDLP L ++ N++ N+ G G A V L
Sbjct: 75 RGKKVIELGAGTGIVGILAALQGGDVTITDLPLVLEQIQGNVQANVPTG---GRAQVRAL 131
Query: 182 TWGXXXXXXXXXXXXXYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLE 241
+WG VLG+D++Y E LL TL LCG TI+LA ++R + E
Sbjct: 132 SWGIDQHVFPGDYDL--VLGADIVYLEPTFPLLLGTLRHLCGPHGTIYLASKMRKEHGTE 189
Query: 242 YFLE 245
F +
Sbjct: 190 SFFQ 193
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| ZFIN|ZDB-GENE-040718-53 zgc:92518 "zgc:92518" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 60/144 (41%), Positives = 77/144 (53%)
Query: 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDR 155
G+V+W S +VL FL+ D LL KKI+ELG+G GLV + +LLGAQV TDLPD
Sbjct: 43 GAVLWPSAMVLCHFLDSHRDQYNLL--DKKIIELGAGTGLVTIVTSLLGAQVTSTDLPDV 100
Query: 156 LRLLKKNIENNLRHGDLRGSAVVTELTWGXXXXXXXXXXX--XXYVLGSDVIYSEGAVGD 213
L L+ N+ N R G R VTEL WG Y+L +DV+Y + +
Sbjct: 101 LANLRHNVNRNTR-GRCRHEPQVTELIWGQQLEERFPRYTCQYDYILAADVVYGHPYLQE 159
Query: 214 LLDTLLQLCGTQTTIFLAGELRND 237
LL+T + LC T I A R D
Sbjct: 160 LLETFIHLCSDHTVILWAMRFRLD 183
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| ZFIN|ZDB-GENE-050320-145 mettl21a "methyltransferase like 21A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 73/203 (35%), Positives = 100/203 (49%)
Query: 55 PTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAV 114
P LSK + QSS + H + + Q LG +V+WD+ VVL FLE
Sbjct: 12 PALSK----LHQSSAEFTL--ANHRIRLSQDWKRLGV----AAVVWDAAVVLCMFLE--- 58
Query: 115 DSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRG 174
G + L GK+++ELG+G GLVG +AALLGA V +TD L L N+ N+ G R
Sbjct: 59 -MGKVDLKGKRVIELGAGTGLVGIVAALLGANVTITDREPALEFLTANVHENIPQG--RQ 115
Query: 175 SAV-VTELTWGXXXXXXXXXXXXXYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233
AV V+ELTWG +LG+D++Y E LL TL L T + L+
Sbjct: 116 KAVQVSELTWGENLDLYPQGGYDL-ILGADIVYLEETFPALLQTLEHLSSGDTVVLLSCR 174
Query: 234 LRNDSVLEYFLEAAMKDFVIGRV 256
+R + E FL + F + V
Sbjct: 175 IRYERD-ERFLTELRQRFSVQEV 196
|
|
| MGI|MGI:2684917 Mettl21d "methyltransferase like 21D" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 72/196 (36%), Positives = 100/196 (51%)
Query: 90 GTPGVTGSVMWDSGVVLGKFLEHAVDSG--MLLLHGKKIVELGSGCGLVGCIAALLGAQV 147
G+ GV G V+WD+ +VL K+LE SG L + ++ELGSG G VG +AA LGA V
Sbjct: 34 GSGGV-GCVVWDAAIVLSKYLETPGFSGDGAHALSRRSVLELGSGTGAVGLMAATLGADV 92
Query: 148 ILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGXXXXXXXXXXXXXYVLGSDVIYS 207
I+TDL + LLK NI+ N +H + GS L WG Y+L +D IY
Sbjct: 93 IVTDLEELQDLLKMNIDMN-KHL-VTGSVQAKVLKWGEDIEDLMSPD---YILMADCIYY 147
Query: 208 EGAVGDLLDTLLQLCGTQTTIFLAGELR----NDSVLEYFLEAAMKDFVIGRVEQTQWHP 263
E ++ LL TL L G++T I E R N + + + E DF + +
Sbjct: 148 EESLEPLLKTLKDLSGSETCIICCYEQRTMGKNPEIEKKYFELLQLDFDFEEIPLDKHDE 207
Query: 264 DYCSPRV-VVYILVKK 278
+Y S + +VYI KK
Sbjct: 208 EYRSEDIHIVYIRKKK 223
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_Genewise1_v1.C_1840077 | hypothetical protein (260 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 281 | |||
| pfam10294 | 170 | pfam10294, Methyltransf_16, Putative methyltransfe | 6e-39 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 1e-07 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 0.001 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.001 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 0.001 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 0.004 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 0.004 |
| >gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 6e-39
Identities = 59/151 (39%), Positives = 82/151 (54%), Gaps = 7/151 (4%)
Query: 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDLP 153
G +WD+ VVL K+LE + G L G ++ELGSG GLVG ALL GA V +TDL
Sbjct: 18 GGHVWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTITDLE 77
Query: 154 DRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP-LPDYVLGSDVIYSEGAVG 212
+ + L+KKNIE N L L WG+D D+ P D +L +D +Y+E +
Sbjct: 78 EAIELMKKNIELNG----LSSKVTAKVLDWGEDLPDDVFDPHPVDLILAADCVYNEDSFP 133
Query: 213 DLLDTLLQLCGTQTTIFLAGELRNDSVLEYF 243
L TL L G +T I +A + R ++ +F
Sbjct: 134 LLEKTLNDLLGKETVILVAYKKRREAEKRFF 164
|
Length = 170 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 23/187 (12%)
Query: 89 LGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQ-V 147
+G P + W G VL +++ D + GK++++LG+G GLV AA GA V
Sbjct: 50 IGLPPPFWAFAWAGGQVLARYI----DDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEV 105
Query: 148 ILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIY 206
+ D+ P + ++ N N + ++ G P DL+ L D+ Y
Sbjct: 106 VAADIDPWLEQAIRLNAAANGVSILFTHADLI-----GSPPAFDLL-------LAGDLFY 153
Query: 207 SEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYC 266
D L L G D Y + ++ I +V + D
Sbjct: 154 -NHTEADRLIPWKDRLAEAGAAVLVG----DPGRAYLPKKRLEFLAIYQVPMFRELEDAA 208
Query: 267 SPRVVVY 273
R V+
Sbjct: 209 VKRTTVW 215
|
Length = 218 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 16/74 (21%)
Query: 111 EHAVDSGMLLLHGKKIVELGSGCGLVGCIA-ALL----GAQVILTDL-PDRLRLLKKNIE 164
E A+++ LL ++++LG+G G IA AL A+V D+ P+ L + ++N +
Sbjct: 98 EWALEAL-LLKEPLRVLDLGTGS---GAIALALAKERPDAEVTAVDISPEALAVARRNAK 153
Query: 165 NNL------RHGDL 172
+ L GD
Sbjct: 154 HGLGARVEFLQGDW 167
|
Length = 275 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.001
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 17/103 (16%)
Query: 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178
G +++++G G G + A L GA+V DL P+ L L ++N + L
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-------- 52
Query: 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQL 221
GD D + G D ++ G GDLL+ L L
Sbjct: 53 ITFVQGD------APDALDLLEGFDAVFIGGGGGDLLELLDAL 89
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.001
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 111 EHAVDSGMLL-----LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIE 164
E A DS +L G +++E+G+G G+V +AA G +V+ D+ P + K N +
Sbjct: 7 EPAEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAK 66
Query: 165 NN 166
N
Sbjct: 67 LN 68
|
Length = 188 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.004
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 17/74 (22%)
Query: 111 EHAVDSGMLLLHGKKIVELGSGCGLVGCIA-ALL----GAQVILTDL-PDRLRLLKKNIE 164
E A++ L ++++LG+G G IA AL A+V D+ P+ L + +KN
Sbjct: 78 EAALE--RLKKGPLRVLDLGTGS---GAIALALAKERPDARVTAVDISPEALAVARKNAA 132
Query: 165 NN------LRHGDL 172
D
Sbjct: 133 RLGLDNVEFLQSDW 146
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 109 FLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG-----AQVILTDL-PDRLRLLKKN 162
+E A+ LL K+I++LG+G G IA L A+VI D+ PD L L ++N
Sbjct: 99 LVEAALAL--LLQLDKRILDLGTGS---GAIAIALAKEGPDAEVIAVDISPDALALAREN 153
Query: 163 IENN 166
E N
Sbjct: 154 AERN 157
|
Length = 280 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.96 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.91 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.91 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.82 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 99.82 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.8 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.78 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 99.74 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.74 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.71 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.71 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.68 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.65 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.64 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.62 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.61 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.6 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.59 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.58 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.58 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.55 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.54 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.54 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.51 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.51 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.5 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.48 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.47 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.46 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.45 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.43 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.43 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.42 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.42 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.42 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.41 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.41 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.41 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.41 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.4 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.4 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.39 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.39 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.39 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.39 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.39 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.38 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.38 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.38 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.38 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.37 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.37 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.37 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.36 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.35 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.35 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.35 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.35 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.34 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.34 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.34 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.33 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.33 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.33 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.33 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.33 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.32 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.32 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.31 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.31 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.31 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.3 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.3 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.29 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.28 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.28 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.27 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.27 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.27 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.27 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.27 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.26 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.26 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.25 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.25 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.24 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.24 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.24 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.24 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.24 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.24 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.24 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.23 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.22 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.21 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.21 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.21 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.19 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.18 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.18 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.18 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.16 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.16 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.15 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.15 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.15 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.15 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.15 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.15 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.14 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.13 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.13 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.13 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.11 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.1 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.09 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.08 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.08 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.08 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.07 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.07 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.07 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 99.07 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.07 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.05 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.05 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.04 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.04 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.02 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.02 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.02 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.01 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.99 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.99 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.99 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.98 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.98 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.98 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.97 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.96 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.93 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.93 | |
| PLN02476 | 278 | O-methyltransferase | 98.91 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.91 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.91 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.91 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.9 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.9 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.88 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.86 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.83 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.83 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.82 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.81 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.81 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.79 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.78 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.76 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.73 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.73 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.72 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.72 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.71 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.71 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.71 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.71 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.7 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.68 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.68 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.68 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.62 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.62 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.61 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.61 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.57 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.57 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.54 | |
| PLN02366 | 308 | spermidine synthase | 98.51 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.51 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.49 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.48 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.47 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.45 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.45 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.36 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.36 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.34 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.31 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.27 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.24 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.24 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.2 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.18 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.18 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.14 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.13 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.13 | |
| PLN02823 | 336 | spermine synthase | 98.13 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.12 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.11 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.09 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.07 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.04 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.04 | |
| KOG2497 | 262 | consensus Predicted methyltransferase [General fun | 98.01 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.01 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.99 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.98 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.92 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.92 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.9 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.89 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.88 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.88 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.87 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.86 | |
| PHA01634 | 156 | hypothetical protein | 97.76 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.69 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.67 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.67 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.66 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.65 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.65 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.65 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.63 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.63 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.61 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.54 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.51 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.5 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.47 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.42 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.35 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.35 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.31 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.27 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.25 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.25 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.24 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.18 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.1 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.06 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.02 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.96 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.93 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.89 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.71 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 96.7 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.69 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.58 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.58 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.41 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.38 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.33 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.14 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.11 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.08 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.06 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.97 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 95.59 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.54 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.54 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.54 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.52 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.49 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.48 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 95.43 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 95.3 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.17 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 95.16 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.99 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 94.93 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.9 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 94.77 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.43 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.26 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.07 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 94.07 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 94.06 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.91 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 93.87 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 93.64 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 93.44 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 93.2 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 93.12 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 92.94 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 92.91 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.59 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 92.51 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 92.44 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 92.42 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.35 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 91.8 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 91.78 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 91.6 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 91.51 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.41 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 91.26 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 91.12 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 91.1 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.08 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 90.87 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 90.78 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 90.7 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 90.04 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 89.81 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 89.59 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 89.33 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 88.84 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 88.36 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 87.71 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 87.68 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 87.58 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 87.39 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 87.02 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 86.87 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 86.82 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 86.5 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.29 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 86.23 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 85.51 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 85.35 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 84.3 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 84.26 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 84.22 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 83.32 | |
| COG3392 | 330 | Adenine-specific DNA methylase [DNA replication, r | 83.31 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 83.15 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 83.1 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 82.93 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 82.89 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 82.73 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 82.61 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 82.4 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 82.34 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 82.32 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 82.31 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 81.83 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 81.74 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 81.02 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 80.8 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 80.65 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 80.53 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 80.31 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 80.12 |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=211.83 Aligned_cols=165 Identities=37% Similarity=0.543 Sum_probs=103.7
Q ss_pred CceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhcc--CccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec
Q 023543 77 GHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDS--GMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL 152 (281)
Q Consensus 77 g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~--~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~ 152 (281)
+..+.|.|+.+ ..||.++|+++.+|++||.++... .+..+++++|||||||+|++|++++++ +.+|++||+
T Consensus 3 ~~~l~i~e~~~-----~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~ 77 (173)
T PF10294_consen 3 NKTLQIEEDWG-----DGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDY 77 (173)
T ss_dssp -------------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-
T ss_pred ccccccccccc-----cCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEecc
Confidence 45567777653 357999999999999999985311 234688999999999999999999998 568999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 153 PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 153 ~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++++++++.|++.|+.. ...++.+..++|++..... +...+||+|+++|++|+++.+++|++++.+++++++.++++
T Consensus 78 ~~~l~~l~~Ni~~N~~~--~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 78 NEVLELLRRNIELNGSL--LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp S-HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred chhhHHHHHHHHhcccc--ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 66999999999999731 1368999999999754222 23458999999999999999999999999999999999999
Q ss_pred EeeeChhHHHHHHHHHhc
Q 023543 232 GELRNDSVLEYFLEAAMK 249 (281)
Q Consensus 232 ~~~r~~~~~~~fl~~~~~ 249 (281)
++.|.... +.|++.+++
T Consensus 156 ~~~R~~~~-~~F~~~~~k 172 (173)
T PF10294_consen 156 YKRRRKSE-QEFFDRLKK 172 (173)
T ss_dssp EE-S-TGG-CHHHHHH--
T ss_pred eCEecHHH-HHHHHHhhh
Confidence 99996654 669988764
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=184.71 Aligned_cols=192 Identities=19% Similarity=0.188 Sum_probs=153.4
Q ss_pred CCCchhhhHHHhhccCCCCCCCCCcccccccceEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccC
Q 023543 38 ESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSG 117 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~ 117 (281)
.++||..+++.-| +|.+..+..+|.+++...+-. ...+.|+.+|+..+++|+ ++++..+.+||.+.
T Consensus 94 ~e~DW~~~wk~~~---~P~rig~~f~I~Psw~~~~~~--~~~~~i~lDPGlAFGTG~-----HpTT~lcL~~Le~~---- 159 (300)
T COG2264 94 DEEDWEREWKKYF---HPVRIGERFVIVPSWREYPEP--SDELNIELDPGLAFGTGT-----HPTTSLCLEALEKL---- 159 (300)
T ss_pred ChHHHHHHHHhcC---CcEEeeeeEEECCCCccCCCC--CCceEEEEccccccCCCC-----ChhHHHHHHHHHHh----
Confidence 5899999999888 899999999999988775432 268999999999876665 99999999999975
Q ss_pred ccccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 118 MLLLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 118 ~~~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|++|||+|||+|+++|+++++|+. |+++|+ +.+++.++.|++.|++.. .+....+ . ......+.+
T Consensus 160 --~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~----~~~~~~~---~-~~~~~~~~~ 229 (300)
T COG2264 160 --LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL----LVQAKGF---L-LLEVPENGP 229 (300)
T ss_pred --hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch----hhhcccc---c-chhhcccCc
Confidence 468999999999999999999999996 999999 889999999999998861 1211111 1 122234579
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
||+|+|+=. ...+..|...+.++++|||+++++.....+. +.+.+.+. ++|.+.....
T Consensus 230 ~DvIVANIL---A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~--~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 230 FDVIVANIL---AEVLVELAPDIKRLLKPGGRLILSGILEDQA--ESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred ccEEEehhh---HHHHHHHHHHHHHHcCCCceEEEEeehHhHH--HHHHHHHHhCCCeEeEEEe
Confidence 999998421 2234789999999999999999999887763 44666664 6999877753
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=187.81 Aligned_cols=199 Identities=21% Similarity=0.255 Sum_probs=144.4
Q ss_pred hccCCCceeeceeCCCCCCCchhhhHHHhhccCCCCCCCCCcccccccceEEEecCCceEEEEeCCCCCCCCCCcCceec
Q 023543 21 LGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMW 100 (281)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W 100 (281)
++.+...++.+ +++||.+.+...| +|....+..+|.+.+.+.+ ..+..+.|..+|+..+++|+ +
T Consensus 82 ~~~~~~~~~~~------~~~dW~~~Wk~~~---~P~~vg~~~~I~P~w~~~~--~~~~~~~I~idPg~AFGTG~-----H 145 (295)
T PF06325_consen 82 LGEIEIEIEEI------EEEDWEEAWKKYF---KPIRVGDRLVIVPSWEEYP--EPPDEIVIEIDPGMAFGTGH-----H 145 (295)
T ss_dssp ------EEEE--------HHCHHHHHHHH------EEECTTEEEEETT------SSTTSEEEEESTTSSS-SSH-----C
T ss_pred cCCCceEEEEe------ccccchHHHHhcC---ccEEECCcEEEECCCcccC--CCCCcEEEEECCCCcccCCC-----C
Confidence 44555556666 8899999999988 8999999999999998774 34677899999998766655 9
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
++|.++.++|.+. ..+|++|||+|||||+++|+++++|+ +|+++|+ +.+++.+++|++.|++. .++.+
T Consensus 146 ~TT~lcl~~l~~~------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~----~~~~v 215 (295)
T PF06325_consen 146 PTTRLCLELLEKY------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE----DRIEV 215 (295)
T ss_dssp HHHHHHHHHHHHH------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T----TCEEE
T ss_pred HHHHHHHHHHHHh------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC----eeEEE
Confidence 9999999999875 46789999999999999999999998 5999999 88999999999999987 34444
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEe
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVE 257 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~ 257 (281)
.. .......+||+|+|+=.. ..+..++..+.++++|+|.++++.....+. ..+.+.+.+||.+....
T Consensus 216 ~~-------~~~~~~~~~dlvvANI~~---~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~--~~v~~a~~~g~~~~~~~ 282 (295)
T PF06325_consen 216 SL-------SEDLVEGKFDLVVANILA---DVLLELAPDIASLLKPGGYLILSGILEEQE--DEVIEAYKQGFELVEER 282 (295)
T ss_dssp SC-------TSCTCCS-EEEEEEES-H---HHHHHHHHHCHHHEEEEEEEEEEEEEGGGH--HHHHHHHHTTEEEEEEE
T ss_pred EE-------ecccccccCCEEEECCCH---HHHHHHHHHHHHhhCCCCEEEEccccHHHH--HHHHHHHHCCCEEEEEE
Confidence 21 112234899999985331 224678888888999999999999987764 34556666689876654
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=156.88 Aligned_cols=190 Identities=18% Similarity=0.222 Sum_probs=144.3
Q ss_pred CCCchhhhHHHhhccCCCCCCCCCcccccccceEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccC
Q 023543 38 ESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSG 117 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~ 117 (281)
+++||.+.+...| +|.+..+..+|.+.+....- ....+.|..+|+..+++|+ ++++.++.+++...
T Consensus 91 ~~~dW~~~w~~~~---~p~~~g~~~~i~p~w~~~~~--~~~~~~i~ldpg~aFgtG~-----h~tt~l~l~~l~~~---- 156 (288)
T TIGR00406 91 FSKDWERAWKDNF---HPVQFGKRFWICPSWRDVPS--DEDALIIMLDPGLAFGTGT-----HPTTSLCLEWLEDL---- 156 (288)
T ss_pred chhhHHHHHHHhC---CCEEEcCeEEEECCCcCCCC--CCCcEEEEECCCCcccCCC-----CHHHHHHHHHHHhh----
Confidence 5799999999998 89999888899888765432 3456788889987655444 88999988888764
Q ss_pred ccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 118 MLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 118 ~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..++++|||+|||+|.+++.+++.|+ +|+++|+ +.+++.+++|+..|++. .++.+...+ . ....+.+
T Consensus 157 --~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~----~~~~~~~~~---~--~~~~~~~ 225 (288)
T TIGR00406 157 --DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS----DRLQVKLIY---L--EQPIEGK 225 (288)
T ss_pred --cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC----cceEEEecc---c--ccccCCC
Confidence 35689999999999999999999886 7999999 88999999999999765 234333321 1 1123468
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEe
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVE 257 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~ 257 (281)
||+|+++-+ ...+..++..+.++|+|||.++++.....+. ..+.+.+.++|.+..+.
T Consensus 226 fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~--~~v~~~~~~~f~~~~~~ 282 (288)
T TIGR00406 226 ADVIVANIL---AEVIKELYPQFSRLVKPGGWLILSGILETQA--QSVCDAYEQGFTVVEIR 282 (288)
T ss_pred ceEEEEecC---HHHHHHHHHHHHHHcCCCcEEEEEeCcHhHH--HHHHHHHHccCceeeEe
Confidence 999998643 3345788999999999999999988765542 44566666568766553
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-19 Score=154.14 Aligned_cols=171 Identities=36% Similarity=0.470 Sum_probs=130.7
Q ss_pred CcCceecchHHHHHHHHhhhhccCc-----ccc--CCCeEEEECCCcCHHHHHHHH-cCCEEEEEechhHHHHHHHHHHH
Q 023543 94 VTGSVMWDSGVVLGKFLEHAVDSGM-----LLL--HGKKIVELGSGCGLVGCIAAL-LGAQVILTDLPDRLRLLKKNIEN 165 (281)
Q Consensus 94 ~tG~~~W~~s~~la~~l~~~~~~~~-----~~~--~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~~~~l~~~~~N~~~ 165 (281)
...+++|+++-.++.++...-..++ ..+ +..+|||||+|||++|+.+|+ .+++|+.+|.+..+..++.|...
T Consensus 51 ~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~ 130 (248)
T KOG2793|consen 51 GISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDK 130 (248)
T ss_pred ceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhh
Confidence 3578999999999999876522110 112 245799999999999999998 78899999999998888888777
Q ss_pred hhcCCCC-CCceEEEEEecCCCCCCCcCCCC-CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHH
Q 023543 166 NLRHGDL-RGSAVVTELTWGDDPDQDLIQPL-PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYF 243 (281)
Q Consensus 166 n~~~~~~-~~~i~~~~l~w~~~~~~~~~~~~-fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~f 243 (281)
|+..... ..++.+..++|++..+.....++ +|+|+++|++|.++..+.++.+++.+|..++.++++++.|+....+.+
T Consensus 131 ~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~ 210 (248)
T KOG2793|consen 131 NNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIE 210 (248)
T ss_pred hhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecccchHHHHH
Confidence 7655332 24899999999998776555555 999999999999999999999999999999999999999997555544
Q ss_pred HHHHhcCCeEEEEecCCCCCC
Q 023543 244 LEAAMKDFVIGRVEQTQWHPD 264 (281)
Q Consensus 244 l~~~~~~f~v~~i~~~~~~~~ 264 (281)
.-.+...|..-.+....++++
T Consensus 211 ~~~~~~~~~~~~v~~~~~~~~ 231 (248)
T KOG2793|consen 211 VLLFKKDLKIFDVVQESFFKD 231 (248)
T ss_pred HHHhhhhhccceeeeEeccCc
Confidence 444443333333333334333
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.2e-18 Score=148.10 Aligned_cols=184 Identities=22% Similarity=0.288 Sum_probs=139.3
Q ss_pred CCCchhhhHHHhhccCCCCCCCCCcccccccceEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccC
Q 023543 38 ESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSG 117 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~ 117 (281)
+++||.+.+-..| +|...++..+|.+.+.... . .....|..+|+..++.|. ++.+..+.+++...
T Consensus 52 ~~~dw~~~w~~~~---~p~~~g~~~~i~p~~~~~~--~-~~~~~i~i~p~~afgtg~-----h~tt~~~l~~l~~~---- 116 (250)
T PRK00517 52 EDEDWEREWKKYF---HPIRIGDRLWIVPSWEDPP--D-PDEINIELDPGMAFGTGT-----HPTTRLCLEALEKL---- 116 (250)
T ss_pred CchhHHHHHHHHC---CCEEEcCCEEEECCCcCCC--C-CCeEEEEECCCCccCCCC-----CHHHHHHHHHHHhh----
Confidence 8899999999888 8988888888988877543 2 456678888876554333 88899999998753
Q ss_pred ccccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 118 MLLLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 118 ~~~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..++++|||+|||+|.+++.+++.|+. |+++|+ +.+++.+++|+..|++. ..+.+.. + +.+
T Consensus 117 --~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~---~--------~~~ 179 (250)
T PRK00517 117 --VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQ---G--------DLK 179 (250)
T ss_pred --cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEcc---C--------CCC
Confidence 357899999999999999999988875 999999 88999999999998763 2232211 1 127
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
||+|+++-. ...+..+++.+.++|+|||.++++...... .+.+...+. .||.+.....
T Consensus 180 fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lilsgi~~~~--~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 180 ADVIVANIL---ANPLLELAPDLARLLKPGGRLILSGILEEQ--ADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred cCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEEEECcHhh--HHHHHHHHHHCCCEEEEEEE
Confidence 999997532 234678889999999999999998766543 234555555 4898777643
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=138.12 Aligned_cols=136 Identities=21% Similarity=0.307 Sum_probs=107.0
Q ss_pred eEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCE--EEEEec-hhH
Q 023543 79 SLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQ--VILTDL-PDR 155 (281)
Q Consensus 79 ~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~--V~~tD~-~~~ 155 (281)
.+++++.|+.|+.. ++-.++.+|++++... ++++|||||||+|.+|+.+++.+++ |+++|+ +.+
T Consensus 1 ~~~~~~~~gvFs~~-----~~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a 67 (170)
T PF05175_consen 1 ELEFITHPGVFSPP-----RLDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDA 67 (170)
T ss_dssp EEEEEEETTSTTTT-----SHHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHH
T ss_pred CEEEEECCCeeCCC-----CCCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHH
Confidence 36788889887633 3367889999998752 6789999999999999999997764 999999 889
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCC-----cHHHHHHHHHHhhCCCcEEEE
Q 023543 156 LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEG-----AVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 156 l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~-----~~~~ll~~l~~ll~~~g~~~l 230 (281)
++.+++|++.|+.. ++.+...|+.+. ..+.+||+|+++.+++... ....+++...++|+|+|.+++
T Consensus 68 ~~~a~~n~~~n~~~-----~v~~~~~d~~~~----~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 68 LELAKRNAERNGLE-----NVEVVQSDLFEA----LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp HHHHHHHHHHTTCT-----TEEEEESSTTTT----CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhcCcc-----cccccccccccc----ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 99999999999876 366666555432 2357899999998876644 378999999999999999988
Q ss_pred EEeeeC
Q 023543 231 AGELRN 236 (281)
Q Consensus 231 ~~~~r~ 236 (281)
+.....
T Consensus 139 v~~~~~ 144 (170)
T PF05175_consen 139 VINSHL 144 (170)
T ss_dssp EEETTS
T ss_pred EeecCC
Confidence 766433
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-18 Score=140.37 Aligned_cols=130 Identities=24% Similarity=0.356 Sum_probs=110.8
Q ss_pred CCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcC
Q 023543 92 PGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 92 ~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
+..++++.|.+++.+|+|+..+ |..++||+|||+|+|+|+++|++++.|++ |+++|+ +.....++.|++.|+..
T Consensus 53 pPpfwa~~WagG~~lAR~i~~~----PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~ 128 (218)
T COG3897 53 PPPFWAFAWAGGQVLARYIDDH----PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS 128 (218)
T ss_pred CchHHHHHHhhhHHHHHHHhcC----ccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce
Confidence 4458999999999999999876 55789999999999999999999999986 999999 88899999999999865
Q ss_pred CCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 170 GDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 170 ~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
+.+...+. ...++.||+|+++|++|+......++.+..++...|-.+++..+.|..
T Consensus 129 ------i~~~~~d~------~g~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 129 ------ILFTHADL------IGSPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred ------eEEeeccc------cCCCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 55555432 225678999999999999999999999777777777777777777764
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-16 Score=140.64 Aligned_cols=166 Identities=15% Similarity=0.187 Sum_probs=124.3
Q ss_pred CCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-
Q 023543 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA--QVILTDL- 152 (281)
Q Consensus 76 ~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~- 152 (281)
.|..++|...|+.||.. ++..+|.+|++-|.. ..+.+|||||||.|.+|+.+++... +++++|.
T Consensus 125 ~~~~~~~~t~pGVFS~~-----~lD~GS~lLl~~l~~--------~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn 191 (300)
T COG2813 125 LGHELTFKTLPGVFSRD-----KLDKGSRLLLETLPP--------DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVN 191 (300)
T ss_pred ccCceEEEeCCCCCcCC-----CcChHHHHHHHhCCc--------cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecC
Confidence 37899999999998844 347788888877753 2344999999999999999999765 7999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCC-----cHHHHHHHHHHhhCCCcE
Q 023543 153 PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEG-----AVGDLLDTLLQLCGTQTT 227 (281)
Q Consensus 153 ~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~-----~~~~ll~~l~~ll~~~g~ 227 (281)
..+++.+|+|+..|+.. +..+.. .+..+. .. .+||.||++..++.-. ..+.++....++|++||.
T Consensus 192 ~~Av~~ar~Nl~~N~~~-----~~~v~~---s~~~~~-v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGe 261 (300)
T COG2813 192 ARAVESARKNLAANGVE-----NTEVWA---SNLYEP-VE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGE 261 (300)
T ss_pred HHHHHHHHHhHHHcCCC-----ccEEEE---eccccc-cc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCE
Confidence 67899999999999876 222222 122222 22 3899999999998732 245799999999999999
Q ss_pred EEEEEeeeChhHHHHHHHHHhcCCe-EEEEecCCCCCCCCCCcEEEEEEEe
Q 023543 228 IFLAGELRNDSVLEYFLEAAMKDFV-IGRVEQTQWHPDYCSPRVVVYILVK 277 (281)
Q Consensus 228 ~~l~~~~r~~~~~~~fl~~~~~~f~-v~~i~~~~~~~~~~~~~~~i~~~~~ 277 (281)
++++.. +... ....+.+-|. ++.+. +..+|.||...|
T Consensus 262 L~iVan-~~l~----y~~~L~~~Fg~v~~la--------~~~gf~Vl~a~k 299 (300)
T COG2813 262 LWIVAN-RHLP----YEKKLKELFGNVEVLA--------KNGGFKVLRAKK 299 (300)
T ss_pred EEEEEc-CCCC----hHHHHHHhcCCEEEEE--------eCCCEEEEEEec
Confidence 998877 3332 2233455676 77776 467899998765
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.6e-18 Score=135.15 Aligned_cols=153 Identities=25% Similarity=0.311 Sum_probs=119.4
Q ss_pred ceecchHHHHHHHHhhhhccCccccCCCeEEEECCC-cCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCC
Q 023543 97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSG-CGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDL 172 (281)
Q Consensus 97 ~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcG-tG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (281)
-.+||+...|+.++.+. +..+.|++|||||.| +|+.|+++|... ..|..||. .++++..++-+..|... .
T Consensus 8 vciwpseeala~~~l~~----~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s--~ 81 (201)
T KOG3201|consen 8 VCIWPSEEALAWTILRD----PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS--S 81 (201)
T ss_pred EEecccHHHHHHHHHhc----hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc--c
Confidence 45999999999999875 346789999999999 599999998754 46999999 77899999888888443 1
Q ss_pred CCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc-CC
Q 023543 173 RGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK-DF 251 (281)
Q Consensus 173 ~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~-~f 251 (281)
..++.+....|...... .....||+|+++||+|..+.++.|+++++.+|+|.|..++..+.|.+. ++.|++.+.. ||
T Consensus 82 ~tsc~vlrw~~~~aqsq-~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~s-L~kF~de~~~~gf 159 (201)
T KOG3201|consen 82 LTSCCVLRWLIWGAQSQ-QEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQS-LQKFLDEVGTVGF 159 (201)
T ss_pred cceehhhHHHHhhhHHH-HhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccch-HHHHHHHHHhcee
Confidence 12343333333222111 123579999999999999999999999999999999988888877664 6889999985 89
Q ss_pred eEEEEe
Q 023543 252 VIGRVE 257 (281)
Q Consensus 252 ~v~~i~ 257 (281)
++..-+
T Consensus 160 ~v~l~e 165 (201)
T KOG3201|consen 160 TVCLEE 165 (201)
T ss_pred EEEecc
Confidence 876654
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9e-16 Score=142.14 Aligned_cols=178 Identities=15% Similarity=0.124 Sum_probs=125.5
Q ss_pred eEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEE
Q 023543 70 NLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQV 147 (281)
Q Consensus 70 ~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V 147 (281)
.+++.+.+..++|...+++||. .++..++.+|.+++.. ..+++|||||||+|.+|+.+++. +++|
T Consensus 189 ~~~~~~~~~~~~~~~~~gVFs~-----~~LD~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~P~~~V 255 (378)
T PRK15001 189 TVSWKLEGTDWTIHNHANVFSR-----TGLDIGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKNPQAKV 255 (378)
T ss_pred eeEEEEcCceEEEEecCCccCC-----CCcChHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhCCCCEE
Confidence 3455567889999999999873 3457888888887743 23469999999999999999986 4689
Q ss_pred EEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCC-----CcHHHHHHHHHHh
Q 023543 148 ILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE-----GAVGDLLDTLLQL 221 (281)
Q Consensus 148 ~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~-----~~~~~ll~~l~~l 221 (281)
+++|. +.+++.+++|++.|+... ..++.+.. ++.... +...+||+|+++.+++.. .....+++.+.++
T Consensus 256 ~~vD~S~~Av~~A~~N~~~n~~~~--~~~v~~~~---~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~ 329 (378)
T PRK15001 256 VFVDESPMAVASSRLNVETNMPEA--LDRCEFMI---NNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRC 329 (378)
T ss_pred EEEECCHHHHHHHHHHHHHcCccc--CceEEEEE---cccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHh
Confidence 99999 778999999999996431 12444443 333222 233579999997766542 2457889999999
Q ss_pred hCCCcEEEEEEeeeChhHHHHHHHHHhcCCe-EEEEecCCCCCCCCCCcEEEEEEEecC
Q 023543 222 CGTQTTIFLAGELRNDSVLEYFLEAAMKDFV-IGRVEQTQWHPDYCSPRVVVYILVKKL 279 (281)
Q Consensus 222 l~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~-v~~i~~~~~~~~~~~~~~~i~~~~~k~ 279 (281)
|+|||.++++.. |... +. ..+.+.|. ++.+. +..+|.||..+|..
T Consensus 330 LkpGG~L~iV~n-r~l~-y~---~~L~~~fg~~~~va--------~~~kf~vl~a~k~~ 375 (378)
T PRK15001 330 LKINGELYIVAN-RHLD-YF---HKLKKIFGNCTTIA--------TNNKFVVLKAVKLG 375 (378)
T ss_pred cccCCEEEEEEe-cCcC-HH---HHHHHHcCCceEEc--------cCCCEEEEEEEeCC
Confidence 999999998864 3322 12 22333343 34443 56789999988743
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-16 Score=133.64 Aligned_cols=176 Identities=15% Similarity=0.178 Sum_probs=131.7
Q ss_pred CceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-C-CEEEEEec-h
Q 023543 77 GHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-P 153 (281)
Q Consensus 77 g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g-~~V~~tD~-~ 153 (281)
++.+.|.|++.. ++.=-.+++|+.|..- ...++|||||||+|++|+++|++ . ++++++|+ +
T Consensus 15 ~~~~~I~q~~~~--------~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~ 78 (248)
T COG4123 15 FKQFFIIQDRCG--------FRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQE 78 (248)
T ss_pred ccceEEEeCCCc--------cccccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCH
Confidence 577888998864 3444579999999752 34889999999999999999986 4 68999999 8
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCC------------------cHHHHH
Q 023543 154 DRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEG------------------AVGDLL 215 (281)
Q Consensus 154 ~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~------------------~~~~ll 215 (281)
++.++|++|++.|.+. .++.+.+.|..+.... ....+||+|+++...|... .++.++
T Consensus 79 ~~a~~A~~nv~ln~l~----~ri~v~~~Di~~~~~~-~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i 153 (248)
T COG4123 79 EAAEMAQRNVALNPLE----ERIQVIEADIKEFLKA-LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLI 153 (248)
T ss_pred HHHHHHHHHHHhCcch----hceeEehhhHHHhhhc-ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHH
Confidence 8999999999999887 7899998776543322 2234799999988877631 278999
Q ss_pred HHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc-CCeEEEEecCCCCCCCCCCcEEEEEEEe
Q 023543 216 DTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK-DFVIGRVEQTQWHPDYCSPRVVVYILVK 277 (281)
Q Consensus 216 ~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~-~f~v~~i~~~~~~~~~~~~~~~i~~~~~ 277 (281)
+...++||++|.+.++... +.+..|++.+++ +|...++..---+++ +.....+....|
T Consensus 154 ~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~~~~~~~k~i~~V~p~~~-k~A~~vLv~~~k 212 (248)
T COG4123 154 RAAAKLLKPGGRLAFVHRP---ERLAEIIELLKSYNLEPKRIQFVYPKIG-KAANRVLVEAIK 212 (248)
T ss_pred HHHHHHccCCCEEEEEecH---HHHHHHHHHHHhcCCCceEEEEecCCCC-CcceEEEEEEec
Confidence 9999999999999888653 234557888886 888888754332222 333444444444
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=135.97 Aligned_cols=109 Identities=20% Similarity=0.162 Sum_probs=92.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
+.|++|||+|||-|+++..+|+.|++|+++|. +++++.++..+.++++. +.+....-+ +......+||+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~------i~y~~~~~e---dl~~~~~~FDvV 128 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN------IDYRQATVE---DLASAGGQFDVV 128 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc------ccchhhhHH---HHHhcCCCccEE
Confidence 68999999999999999999999999999999 78899999999998865 222222211 111123699999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChh
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
++.+++.|.++.+.+++.+.+++||+|.++++...|+..
T Consensus 129 ~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 129 TCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred EEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 999999999999999999999999999999999988754
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=120.68 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=106.6
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l 181 (281)
+.+|.+++. ..++++|||+|||+|.+++.++..+.+|+++|+ +++++.+++|+..|+. ++.+...
T Consensus 8 ~~~l~~~l~--------~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~ 73 (179)
T TIGR00537 8 SLLLEANLR--------ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV------GLDVVMT 73 (179)
T ss_pred HHHHHHHHH--------hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEc
Confidence 566666664 246689999999999999999998889999999 8999999999988764 3556665
Q ss_pred ecCCCCCCCcCCCCCcEEEEccccCCCC---------------------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHH
Q 023543 182 TWGDDPDQDLIQPLPDYVLGSDVIYSEG---------------------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVL 240 (281)
Q Consensus 182 ~w~~~~~~~~~~~~fD~Iia~d~iy~~~---------------------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~ 240 (281)
|+.+. ..++||+|+++.+.+... .++.+++.+.++|+|||.+++........
T Consensus 74 d~~~~-----~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~-- 146 (179)
T TIGR00537 74 DLFKG-----VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGE-- 146 (179)
T ss_pred ccccc-----cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCCh--
Confidence 55332 235899999987765422 15678999999999999988876554421
Q ss_pred HHHHHHHh-cCCeEEEEecCCCCCCCCCCcEEEEE
Q 023543 241 EYFLEAAM-KDFVIGRVEQTQWHPDYCSPRVVVYI 274 (281)
Q Consensus 241 ~~fl~~~~-~~f~v~~i~~~~~~~~~~~~~~~i~~ 274 (281)
..+++.+. .+|.++.+..... -.+++.+|+
T Consensus 147 ~~~~~~l~~~gf~~~~~~~~~~----~~~~~~~~~ 177 (179)
T TIGR00537 147 PDTFDKLDERGFRYEIVAERGL----FFEELFAIK 177 (179)
T ss_pred HHHHHHHHhCCCeEEEEEEeec----CceEEEEEE
Confidence 23444554 4999998875443 334555554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=117.39 Aligned_cols=104 Identities=17% Similarity=0.220 Sum_probs=83.7
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++++|||||||+|..++.+++ .+++|+++|+ +++++.+++|+..++.. .++.+..-++ . ... -..++||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~i~~~~~d~-~-~~~-~~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS----DRITFVQGDA-E-FDP-DFLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT----TTEEEEESCC-H-GGT-TTSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEECcc-c-cCc-ccCCCCCE
Confidence 578999999999999999999 8899999999 89999999999766554 6888888665 1 111 12357999
Q ss_pred EEEcc-ccCC---CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 199 VLGSD-VIYS---EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 199 Iia~d-~iy~---~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|++.. +..+ ......+++.+.++|+|||++++..
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99988 3322 2456889999999999999998864
|
... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=118.82 Aligned_cols=110 Identities=22% Similarity=0.253 Sum_probs=93.2
Q ss_pred CCCeEEEECCCcCHHHHHHH-Hc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 122 HGKKIVELGSGCGLVGCIAA-LL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a-~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
++.+|||||||+|.++..++ +. +++|+++|+ +++++.++++++.++.. ++.+...|+.+ .+..+. .+||
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-----ni~~~~~d~~~-l~~~~~-~~~D 75 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-----NIEFIQGDIED-LPQELE-EKFD 75 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-----TEEEEESBTTC-GCGCSS-TTEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-----ccceEEeehhc-cccccC-CCee
Confidence 57899999999999999999 43 678999999 89999999999998875 79999988766 332122 7899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChh
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
+|++..++++......+++.+.++|+++|.+++........
T Consensus 76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE 116 (152)
T ss_dssp EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence 99999999999999999999999999999999888774443
|
... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-15 Score=131.02 Aligned_cols=111 Identities=26% Similarity=0.312 Sum_probs=86.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
+.|++|||+|||+|+++..+|++|++|+|+|. +++++.|++....+-.. ...+. ..+...+. +..-..++||.|
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~---~~~~~-y~l~~~~~-~~E~~~~~fDaV 162 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL---EGAIA-YRLEYEDT-DVEGLTGKFDAV 162 (282)
T ss_pred cCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh---ccccc-eeeehhhc-chhhccccccee
Confidence 55789999999999999999999999999999 88999999885555333 11111 12221111 111123569999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
++++++.|..+.+.+++.+.++|+|+|.++++...|.
T Consensus 163 vcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred eeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 9999999999999999999999999999999988775
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.8e-14 Score=117.40 Aligned_cols=123 Identities=17% Similarity=0.174 Sum_probs=92.7
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++.+|||+|||+|..++.+++ .+.+|+++|. +++++.+++|++.++.. ++++...+..+. .. +.+||+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-----~i~~~~~d~~~~---~~-~~~fDl 115 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-----NVTVVHGRAEEF---GQ-EEKFDV 115 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-----CEEEEeccHhhC---CC-CCCccE
Confidence 488999999999999998886 4578999999 88999999999999865 477777665432 12 568999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEecCC
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQTQ 260 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~~~ 260 (281)
|++... ..++.+++.+.++|+|||.+++......... +....+ .|+.+..+....
T Consensus 116 V~~~~~----~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 116 VTSRAV----ASLSDLVELCLPLLKPGGRFLALKGRDPEEE---IAELPKALGGKVEEVIELT 171 (187)
T ss_pred EEEccc----cCHHHHHHHHHHhcCCCeEEEEEeCCChHHH---HHHHHHhcCceEeeeEEEe
Confidence 998642 4578999999999999999888765443332 223233 288777665433
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=126.49 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=114.5
Q ss_pred eEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhH
Q 023543 79 SLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDR 155 (281)
Q Consensus 79 ~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~ 155 (281)
.+.+...|+.++..+ +..+|.+|.+.+.. ...++|||||||+|.+++.+++.+ .+|+++|+ +.+
T Consensus 166 ~l~i~~~pgvFs~~~-----lD~gt~lLl~~l~~--------~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~A 232 (342)
T PRK09489 166 GLTVKTLPGVFSRDG-----LDVGSQLLLSTLTP--------HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAA 232 (342)
T ss_pred CEEEEeCCCCCCCCC-----CCHHHHHHHHhccc--------cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 467788888776433 36677777777642 234589999999999999999864 48999999 789
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-----CCcHHHHHHHHHHhhCCCcEEEE
Q 023543 156 LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS-----EGAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 156 l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~-----~~~~~~ll~~l~~ll~~~g~~~l 230 (281)
++.+++|++.|+.. ..+.. .+.... ...+||+|+++.++|. ....+.+++.+.++|+|||.+++
T Consensus 233 l~~A~~nl~~n~l~------~~~~~---~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 233 LESSRATLAANGLE------GEVFA---SNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred HHHHHHHHHHcCCC------CEEEE---cccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 99999999999764 22332 222221 2468999999887765 23568999999999999999988
Q ss_pred EEeeeChhHHHHHHHHHhcCCe-EEEEecCCCCCCCCCCcEEEEEEEec
Q 023543 231 AGELRNDSVLEYFLEAAMKDFV-IGRVEQTQWHPDYCSPRVVVYILVKK 278 (281)
Q Consensus 231 ~~~~r~~~~~~~fl~~~~~~f~-v~~i~~~~~~~~~~~~~~~i~~~~~k 278 (281)
+....-+ ++..++. .|. ++.+. +..+|.||..+|.
T Consensus 302 Van~~l~--y~~~l~~---~Fg~~~~la--------~~~~f~v~~a~~~ 337 (342)
T PRK09489 302 VANAFLP--YPDLLDE---TFGSHEVLA--------QTGRFKVYRAIMT 337 (342)
T ss_pred EEeCCCC--hHHHHHH---HcCCeEEEE--------eCCCEEEEEEEcc
Confidence 7653222 2233333 232 34443 3568899988764
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-14 Score=117.39 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=94.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
+++++|||+|||+|.+++.++..+ .+|+++|. +.+++.+++|++.++.. ++.+...++.+. ....+||
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-----~i~~i~~d~~~~----~~~~~fD 111 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-----NVEIVNGRAEDF----QHEEQFD 111 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-----CeEEEecchhhc----cccCCcc
Confidence 468899999999999999988754 57999999 78999999999988754 577888766442 1246899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
+|++.. ...++.+++.+.++|+|||.+++..............+.+. .||+......
T Consensus 112 ~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 112 VITSRA----LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred EEEehh----hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccc
Confidence 998854 23567889999999999999888765444444444444443 4787666643
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=132.01 Aligned_cols=109 Identities=19% Similarity=0.163 Sum_probs=89.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..+++.|++|+++|. +++++.+++++..+... .++.+...+..+ ....+.+||+|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~----~~i~~~~~dae~---l~~~~~~FD~V 202 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVT----STIEYLCTTAEK---LADEGRKFDAV 202 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcc----cceeEEecCHHH---hhhccCCCCEE
Confidence 56789999999999999999999999999999 88999999887665432 356666644322 12235689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
++.+++++..+...+++.+.++|+|||.++++...+.
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 9999999999999999999999999999998865543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.3e-14 Score=118.33 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=83.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..++.+++.|.+|+++|+ +.+++.+++++..++.. ++.+...++.+. .+ ..+||+|
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~---~~-~~~fD~I 99 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLD-----NLHTAVVDLNNL---TF-DGEYDFI 99 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----cceEEecChhhC---Cc-CCCcCEE
Confidence 46789999999999999999999999999999 88999999999887654 456666554321 12 3579999
Q ss_pred EEccccCCC--CcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
+++.++|+. .....+++.+.++|+|||.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999998763 46889999999999999986543
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.8e-14 Score=123.03 Aligned_cols=109 Identities=20% Similarity=0.152 Sum_probs=90.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..++.++..|.+|+++|+ +++++.+++++..++.. .++.+...+..+..+ ....+||+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~----~~v~~~~~d~~~l~~--~~~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVS----DNMQFIHCAAQDIAQ--HLETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc----cceEEEEcCHHHHhh--hcCCCCCEE
Confidence 35679999999999999999999999999999 89999999999887754 456776655433211 234689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
++..++++......+++.+.++|+|||.+++.....
T Consensus 117 ~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 117 LFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred EehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 999999988888999999999999999998775443
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.4e-13 Score=111.44 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=107.7
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
++.+.++++++.. .++++|||+|||+|..++.++..+.+|+++|+ +++++.+++|+..++... ..+.+
T Consensus 9 ~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~ 77 (188)
T PRK14968 9 AEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRN---NGVEV 77 (188)
T ss_pred chhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCC---cceEE
Confidence 5667777777652 46789999999999999999988889999999 889999999999887641 12566
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCC---------------------CcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSE---------------------GAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~---------------------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
...|+.+. +...+||+|+++...+.. ..++.+++.+.++|+|+|.+++.......
T Consensus 78 ~~~d~~~~----~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~ 153 (188)
T PRK14968 78 IRSDLFEP----FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG 153 (188)
T ss_pred Eecccccc----ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC
Confidence 66555332 223479999987655431 12567899999999999987776543221
Q ss_pred hHHHHHHHHHh-cCCeEEEEecCCCCCCCCCCcEEEEEEE
Q 023543 238 SVLEYFLEAAM-KDFVIGRVEQTQWHPDYCSPRVVVYILV 276 (281)
Q Consensus 238 ~~~~~fl~~~~-~~f~v~~i~~~~~~~~~~~~~~~i~~~~ 276 (281)
.+.+.+.+. .+|.+..+.... +..+.+.++..+
T Consensus 154 --~~~l~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~ 187 (188)
T PRK14968 154 --EDEVLEYLEKLGFEAEVVAEEK----FPFEELIVLELV 187 (188)
T ss_pred --HHHHHHHHHHCCCeeeeeeecc----cCCceEEEEEEe
Confidence 122333443 388877665422 344566655544
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=115.06 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=80.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..++.+++.|.+|+++|+ +.+++.+++++..+++. +.+...+... ..+ .++||+|
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~------v~~~~~d~~~---~~~-~~~fD~I 98 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP------LRTDAYDINA---AAL-NEDYDFI 98 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC------ceeEeccchh---ccc-cCCCCEE
Confidence 45679999999999999999999999999999 88999999998877653 3334433321 112 3579999
Q ss_pred EEccccCCC--CcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
+++.++++. .....+++.+.++|+|||.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 999988763 56789999999999999985554
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=112.83 Aligned_cols=139 Identities=19% Similarity=0.164 Sum_probs=99.3
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
.+.++++++... ...++.+|||+|||+|.+++.+++.++ +|+++|+ +.+++.+++|+..++.. +.+.
T Consensus 21 ds~~l~~~l~~~-----~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~------~~~~ 89 (223)
T PRK14967 21 DTQLLADALAAE-----GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVD------VDVR 89 (223)
T ss_pred cHHHHHHHHHhc-----ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCe------eEEE
Confidence 467788887643 124578999999999999999998776 8999999 88999999999988643 5556
Q ss_pred EEecCCCCCCCcCCCCCcEEEEccccCCCC---------------------cHHHHHHHHHHhhCCCcEEEEEEeeeChh
Q 023543 180 ELTWGDDPDQDLIQPLPDYVLGSDVIYSEG---------------------AVGDLLDTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 180 ~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~---------------------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
..++.+. +...+||+|+++...+... .+..+++.+.++|++||.+++.......
T Consensus 90 ~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~- 164 (223)
T PRK14967 90 RGDWARA----VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG- 164 (223)
T ss_pred ECchhhh----ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC-
Confidence 6555332 2346899999865433211 1567888899999999998887554422
Q ss_pred HHHHHHHHHh-cCCeEEEEe
Q 023543 239 VLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 239 ~~~~fl~~~~-~~f~v~~i~ 257 (281)
...++..+. .+|.++.+.
T Consensus 165 -~~~~~~~l~~~g~~~~~~~ 183 (223)
T PRK14967 165 -VERTLTRLSEAGLDAEVVA 183 (223)
T ss_pred -HHHHHHHHHHCCCCeEEEE
Confidence 233555555 477766653
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-13 Score=124.25 Aligned_cols=105 Identities=16% Similarity=0.067 Sum_probs=88.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++++|||+|||+|..+..+++. +++|+++|+ +.+++.+++++..++.. .++.+...|..+ ..+.+.+||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~----~~v~~~~~D~~~---~~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS----DKVSFQVADALN---QPFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEEcCccc---CCCCCCCccE
Confidence 46789999999999999988874 789999999 88999999999887764 467777755432 2345678999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|++..++++..+...+++.+.++|+|||.++++.
T Consensus 190 V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 190 VWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999998889999999999999999998865
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=101.03 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=76.0
Q ss_pred EEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccc
Q 023543 127 VELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDV 204 (281)
Q Consensus 127 LELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~ 204 (281)
||+|||+|..+..+++. +.+|+++|+ +++++.++++....+ +.+...+. .+..+.+.+||+|++..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~--------~~~~~~d~---~~l~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG--------VSFRQGDA---EDLPFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST--------EEEEESBT---TSSSS-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC--------chheeehH---HhCccccccccccccccc
Confidence 89999999999999998 789999999 788999988766542 33555443 334566789999999999
Q ss_pred cCCCCcHHHHHHHHHHhhCCCcEEEE
Q 023543 205 IYSEGAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 205 iy~~~~~~~ll~~l~~ll~~~g~~~l 230 (281)
+++......+++.+.+.|||||.+++
T Consensus 70 ~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 70 LHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999999999875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.2e-13 Score=119.66 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=82.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..++.+++.|.+|+++|+ +.+++.+++|+..+++. +.+...|... .. ...+||+|
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~------v~~~~~D~~~---~~-~~~~fD~I 188 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLN------IRTGLYDINS---AS-IQEEYDFI 188 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc------eEEEEechhc---cc-ccCCccEE
Confidence 45679999999999999999999999999999 78999999999887653 4555544322 11 25689999
Q ss_pred EEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 200 LGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 200 ia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++..++++. ...+.+++.+.++|+|||.+++..
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999988763 478899999999999999966543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.4e-13 Score=115.22 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=81.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+|||+|||||.++..+++. + .+|+++|+ +.|++.+++++...+.. ++.+...|-. +..+.+.+|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-----~i~~v~~da~---~lp~~d~sf 117 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-----NIEFVQGDAE---DLPFPDNSF 117 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTT---B--S-TT-E
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-----CeeEEEcCHH---HhcCCCCce
Confidence 56889999999999999988874 3 47999999 89999999999887654 6777775533 344567899
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
|+|.++-.+.+..+.+..++.+.++|||||.+.+....+..
T Consensus 118 D~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 118 DAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp EEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred eEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 99999999999889999999999999999998887766553
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=113.27 Aligned_cols=106 Identities=11% Similarity=0.103 Sum_probs=90.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
+|.+|||+|||||-.++.+++.. ++|+++|+ +.||+.+++.+..-+.. .+.+...+ ....++++.+||+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-----~i~fv~~d---Ae~LPf~D~sFD~ 122 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-----NVEFVVGD---AENLPFPDNSFDA 122 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-----ceEEEEec---hhhCCCCCCccCE
Confidence 78999999999999999999865 68999999 88999999988876554 36666644 4455578899999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|.++-.+.+..+.+..++.+.|.|||||++++....+
T Consensus 123 vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 123 VTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred EEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 9999999999999999999999999999887776554
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=110.91 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=81.1
Q ss_pred eEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 125 KIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
+|||||||||.+++.+++.+. +|+++|+ +++++.|++|+..|++. ++.+...+|..... ++||+||+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~-----~~~~~~~dlf~~~~-----~~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV-----RVLVVQSDLFEPLR-----GKFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCc-----cEEEEeeecccccC-----CceeEEEe
Confidence 899999999999999998765 8999999 89999999999999873 34444437754322 37888887
Q ss_pred ccccCCCC-------------------------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHH
Q 023543 202 SDVIYSEG-------------------------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFL 244 (281)
Q Consensus 202 ~d~iy~~~-------------------------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl 244 (281)
+...-..+ .+..++..+.+.|+|+|.+++-........+...+
T Consensus 183 NPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~ 250 (280)
T COG2890 183 NPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALF 250 (280)
T ss_pred CCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHH
Confidence 54432211 26778888899999999887766645544434343
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=110.16 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=80.2
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..+++++||||||.|..++.+|.+|..|+++|+ +.+++.+++-++.+++. +.....|..+. .+ ...||+
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~------i~~~~~Dl~~~---~~-~~~yD~ 97 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD------IRTRVADLNDF---DF-PEEYDF 97 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T------EEEEE-BGCCB---S--TTTEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce------eEEEEecchhc---cc-cCCcCE
Confidence 357889999999999999999999999999999 67899998888877664 67777665432 22 367999
Q ss_pred EEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 199 VLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 199 Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|++.-++++ .+..+.+++.+...++|||.+++..
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 998766654 6788999999999999999977643
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=109.90 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=96.8
Q ss_pred CeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
++|||+|||+|..+..+++. +.+|+++|+ +++++.+++++...+.. .++.+...|..+. .. ..+||+|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~----~~i~~~~~d~~~~---~~-~~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ----GRIRIFYRDSAKD---PF-PDTYDLVF 72 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC----cceEEEecccccC---CC-CCCCCEee
Confidence 47999999999998888874 468999999 88899999999887765 4677777665332 11 35799999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC-------------hhHHHHHHHHHh-cCCeEEEEe
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN-------------DSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~-------------~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
+..++++....+.+++.+.++|+|||.+++...... ......|.+.+. .||.+....
T Consensus 73 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 73 GFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred hHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 999999988899999999999999999988764321 011234555555 489876654
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-12 Score=112.47 Aligned_cols=110 Identities=11% Similarity=0.060 Sum_probs=85.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|.++..+++. + .+|+++|+ ++|++.++++....... ...++.+...+.. +..+.+.+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~--~~~~i~~~~~d~~---~lp~~~~sf 146 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS--CYKNIEWIEGDAT---DLPFDDCYF 146 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc--cCCCeEEEEcccc---cCCCCCCCE
Confidence 45789999999999999888864 4 48999999 88999998775422111 0135666665533 233456789
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|+|+++.++++..+...+++.+.++|+|||.+++....+
T Consensus 147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 999999999998899999999999999999988876544
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=116.88 Aligned_cols=105 Identities=19% Similarity=0.087 Sum_probs=80.2
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..+|++|||||||+|..++.++..|+ .|+++|. +.++..++......+.. .++.+...+..+. .. +.+||
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~----~~i~~~~~d~e~l---p~-~~~FD 191 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND----QRAHLLPLGIEQL---PA-LKAFD 191 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC----CCeEEEeCCHHHC---CC-cCCcC
Confidence 36789999999999999999998887 5999999 55664433222211111 3577777655432 22 56899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|++..++|+..+...+++.+.+.|+|||.+++..
T Consensus 192 ~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 192 TVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999999999999999999999998764
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-12 Score=113.61 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=82.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||||||+|..+..++. .+++|+++|+ +.+++.++++.... .++.+...+.. ...+.+.+||+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~i~~~~~D~~---~~~~~~~~FD~ 120 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK-------NKIEFEANDIL---KKDFPENTFDM 120 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC-------CceEEEECCcc---cCCCCCCCeEE
Confidence 4678999999999998888776 5779999999 88999998875431 35666665543 22344578999
Q ss_pred EEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|++.+++++.. ....+++.+.++|+|||.++++...
T Consensus 121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999887743 7899999999999999999988653
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=103.38 Aligned_cols=117 Identities=21% Similarity=0.153 Sum_probs=84.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|.+++.+++.+ .+|+++|+ +++++.+++|+..++.. ++.+...+.. .. ...+||
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-----~i~~~~~d~~----~~-~~~~~D 99 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-----NIDIIPGEAP----IE-LPGKAD 99 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CeEEEecCch----hh-cCcCCC
Confidence 467899999999999999998754 58999999 88999999999988654 4665553321 11 235799
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFV 252 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~ 252 (281)
+|++.... ..+..+++.+.+.|+|||.+++...... ....+...+. .+|.
T Consensus 100 ~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~~~--~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 100 AIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFILLE--NLHSALAHLEKCGVS 150 (187)
T ss_pred EEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEecHh--hHHHHHHHHHHCCCC
Confidence 99986543 3467899999999999999887654322 2233444444 3653
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=114.10 Aligned_cols=119 Identities=14% Similarity=0.137 Sum_probs=88.9
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
+-....+++.+.+. ..+|.+|||||||.|-+++.+|+. |++|+++.+ ++..+.+++.+...++. +++.+.
T Consensus 46 AQ~~k~~~~~~~~~----l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~----~~v~v~ 117 (273)
T PF02353_consen 46 AQERKLDLLCEKLG----LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE----DRVEVR 117 (273)
T ss_dssp HHHHHHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS----STEEEE
T ss_pred HHHHHHHHHHHHhC----CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC----CceEEE
Confidence 33344455554432 467899999999999999999986 999999999 77899999999998876 578888
Q ss_pred EEecCCCCCCCcCCCCCcEEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 180 ELTWGDDPDQDLIQPLPDYVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 180 ~l~w~~~~~~~~~~~~fD~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
..||.+. .++||.|++.+++.+. ...+.+++.+.++|+|||++++....
T Consensus 118 ~~D~~~~------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 118 LQDYRDL------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp ES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred Eeecccc------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 8777532 2489999999999875 67899999999999999998876544
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=116.07 Aligned_cols=105 Identities=18% Similarity=0.096 Sum_probs=79.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..+|++|||+|||+|.....++..|+ .|+++|. +.++..++......... .++.+...+..+.. ...+||
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~----~~v~~~~~~ie~lp----~~~~FD 190 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND----KRAILEPLGIEQLH----ELYAFD 190 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC----CCeEEEECCHHHCC----CCCCcC
Confidence 46789999999999999988888887 5999999 66776543322211111 24555655543321 124799
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|++..++|+..+...+++.+++.|+|||.+++..
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999999999999999999999999998764
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-12 Score=110.00 Aligned_cols=105 Identities=11% Similarity=0.044 Sum_probs=84.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++++|||+|||+|..+..++.. +.+|+++|+ +.+++.+++|+..++.. ++.+...+..+ ..+.+.+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~---~~~~~~~f 115 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-----NVELVHGNAME---LPFDDNSF 115 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-----ceEEEEechhc---CCCCCCCc
Confidence 45789999999999999988864 358999999 88999999998876543 56666655432 22345789
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+++.++.+......+++.+.++|+|||.+++...
T Consensus 116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 9999998888888889999999999999999887653
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-12 Score=112.42 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=83.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHH----cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~----~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.++.+|||||||+|..++.+++ .+.+|+++|+ +.|++.+++|+..++.. .++.+...+..+ ++.+.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~----~~v~~~~~d~~~-----~~~~~ 125 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP----TPVDVIEGDIRD-----IAIEN 125 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEeCChhh-----CCCCC
Confidence 4678999999999998887776 3568999999 89999999999887654 357776655432 12246
Q ss_pred CcEEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 196 PDYVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 196 fD~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
+|+|+++-++++. .....+++.+.+.|+|||.++++...+
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 8999998887664 345789999999999999999987553
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-12 Score=112.06 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=92.4
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..+|++|||||||.|.+++.+|+. |.+|+++++ ++..+.+++.+...++. .++++...||.+. +++||
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~----~~v~v~l~d~rd~------~e~fD 139 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE----DNVEVRLQDYRDF------EEPFD 139 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC----cccEEEecccccc------ccccc
Confidence 568999999999999999999985 899999999 77899999999998887 6888888888643 34599
Q ss_pred EEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 198 YVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 198 ~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
-|++.+++.+. ...+.+++.+.++|+|+|.+++-...+.
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 99999999874 5599999999999999999887765543
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-11 Score=112.16 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=95.8
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
+.+..+.+++... ..++++|||+|||+|.+++.+++. +.+|+++|+ +++++.+++|++.++. ++.
T Consensus 236 peTE~LVe~aL~~------l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~------rV~ 303 (423)
T PRK14966 236 PETEHLVEAVLAR------LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA------RVE 303 (423)
T ss_pred ccHHHHHHHhhhc------cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------cEE
Confidence 4566777777653 124579999999999999988863 568999999 8899999999998753 477
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCCC-------------------------CcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYSE-------------------------GAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~-------------------------~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+...||.+.... ...+||+|+++.+.... ..+..+++.+.++|+|+|.+++..
T Consensus 304 fi~gDl~e~~l~--~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 304 FAHGSWFDTDMP--SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred EEEcchhccccc--cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 777776432110 13479999986542211 124578888889999999987765
Q ss_pred eeeChhHHHHHHHHHhcCCeEEEE
Q 023543 233 ELRNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 233 ~~r~~~~~~~fl~~~~~~f~v~~i 256 (281)
.....+.+..++.. .+|....+
T Consensus 382 G~~Q~e~V~~ll~~--~Gf~~v~v 403 (423)
T PRK14966 382 GFDQGAAVRGVLAE--NGFSGVET 403 (423)
T ss_pred CccHHHHHHHHHHH--CCCcEEEE
Confidence 54444444444432 47764444
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=106.80 Aligned_cols=100 Identities=21% Similarity=0.286 Sum_probs=80.4
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..++++|||+|||+|..+..++..|.+|+++|+ +.+++. . +......+-. .....+.+||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~---------~~~~~~~~~~---~~~~~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R---------NVVFDNFDAQ---DPPFPDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T---------TSEEEEEECH---THHCHSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h---------hhhhhhhhhh---hhhccccchhh
Confidence 357889999999999999999999999999999 777766 1 1222222110 11234578999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
|++++++++..+...+++.+.++|+|||.++++...+..
T Consensus 82 i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 82 IICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp EEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred HhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 999999999999999999999999999999999988753
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.5e-12 Score=112.04 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=85.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..++.+++ .+. +|+++|+ +++++.+++|+..++.. ++.+...++.+ ..+.+.+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-----~v~~~~~d~~~---l~~~~~~f 147 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-----NVEFRLGEIEA---LPVADNSV 147 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-----CEEEEEcchhh---CCCCCCce
Confidence 4688999999999998887765 343 6999999 88999999999887653 56666655432 22345689
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|++..++++....+.+++.+.++|+|||.++++..
T Consensus 148 D~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 148 DVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred eEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999988888889999999999999999988653
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.1e-13 Score=102.17 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=83.7
Q ss_pred CCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 123 GKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
|.+|||+|||+|.+.+.+++.+ .+++++|+ +.+++.++.|+..++.. .++.+...|+.+.. ..+...+||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~----~~~~~~~~D~~~~~-~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD----DRVEVIVGDARDLP-EPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT----TTEEEEESHHHHHH-HTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC----ceEEEEECchhhch-hhccCceeEEEE
Confidence 5689999999999999999988 78999999 88999999999998775 56888887764322 124568899999
Q ss_pred EccccCCC--------CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 201 GSDVIYSE--------GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 201 a~d~iy~~--------~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
++-..... .....+++.+.++|+|+|.+++...
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 87776542 2467899999999999999887643
|
... |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=103.65 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=89.4
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..++.+|||+|||+|.+++.+++. +.+|+++|+ +++++.+++|+..+++. .++.+...+..+... ..+++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~----~~v~~~~~d~~~~l~--~~~~~ 111 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL----NNIVLIKGEAPEILF--TINEK 111 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CCeEEEEechhhhHh--hcCCC
Confidence 457889999999999999988863 358999999 88999999999998743 356666654332111 12367
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRV 256 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i 256 (281)
||.|+... ....+..+++.+.++|+|||.+++... ..+........+. .+|.++.+
T Consensus 112 ~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 112 FDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNLEIT 168 (198)
T ss_pred CCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCeEEE
Confidence 99999843 234568899999999999999876433 3333444555554 47754443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-12 Score=126.55 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=107.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|++|||||||+|.+++.+++.|+ +|+++|+ +.+++.+++|++.|++. ..++.+...|..+.... .+.+||+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~---~~~v~~i~~D~~~~l~~--~~~~fDl 611 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS---GRQHRLIQADCLAWLKE--AREQFDL 611 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---ccceEEEEccHHHHHHH--cCCCcCE
Confidence 4689999999999999999999887 5999999 88999999999999875 13577777664322111 1468999
Q ss_pred EEEccccCC-----------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEecCCCCCCCC
Q 023543 199 VLGSDVIYS-----------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQTQWHPDYC 266 (281)
Q Consensus 199 Iia~d~iy~-----------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~~~~~~~~~ 266 (281)
|++.-..+. ...+..++..+.++|+|||.++++...+..... ...+. .|+.+..+......+++.
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~~~~~Dhp 688 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAKTLPPDFA 688 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecCCCCCCCC
Confidence 887544322 124677899999999999999887665543321 22333 589999998888888875
Q ss_pred -CCcEE-EEEEE
Q 023543 267 -SPRVV-VYILV 276 (281)
Q Consensus 267 -~~~~~-i~~~~ 276 (281)
...++ .|.++
T Consensus 689 ~~~~~~~~~~~~ 700 (702)
T PRK11783 689 RNPKIHNCWLIT 700 (702)
T ss_pred CCcccceeEEEe
Confidence 33333 55554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.9e-12 Score=120.02 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=86.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|.+++.+++ .+.+|+++|+ +++++.+++|+.... .++.+...|+.. ..+++.+||+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~------~~v~~~~~d~~~---~~~~~~~fD~ 335 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK------CSVEFEVADCTK---KTYPDNSFDV 335 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC------CceEEEEcCccc---CCCCCCCEEE
Confidence 3577999999999999988886 5789999999 789999998875321 357777766543 2334568999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|++.+++++..+.+.+++.+.++|+|||.+++....+
T Consensus 336 I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 336 IYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred EEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 9999999999999999999999999999999886543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-13 Score=103.29 Aligned_cols=96 Identities=16% Similarity=0.103 Sum_probs=60.8
Q ss_pred EEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEcc
Q 023543 127 VELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSD 203 (281)
Q Consensus 127 LELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d 203 (281)
||+|||+|.....+... +.+++++|+ +.|++.+++++...... +.....+.-.+.... ....+||+|+++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-----NFERLRFDVLDLFDY-DPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---C-CC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-----ceeEEEeecCChhhc-ccccccceehhhh
Confidence 79999999988877775 668999999 88998888887776532 222233221111111 1125899999999
Q ss_pred ccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 204 VIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 204 ~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
++++.+..+.+++.+.++|+|||.+
T Consensus 75 vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.9e-11 Score=114.28 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=102.9
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l 181 (281)
+..+.+++...+. ..++.+|||+|||+|.+++.+|+.+.+|+++|+ ++|++.+++|+..|+.. ++.+...
T Consensus 282 ~e~l~~~vl~~l~----~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-----~v~~~~~ 352 (443)
T PRK13168 282 NQKMVARALEWLD----PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLD-----NVTFYHA 352 (443)
T ss_pred HHHHHHHHHHHhc----CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEe
Confidence 4556666655432 245789999999999999999998889999999 88999999999999865 5888887
Q ss_pred ecCCCCC-CCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHH-hcCCeEEEEecC
Q 023543 182 TWGDDPD-QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAA-MKDFVIGRVEQT 259 (281)
Q Consensus 182 ~w~~~~~-~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~-~~~f~v~~i~~~ 259 (281)
|+.+... ..+.+.+||+|+. |.-|.- ...+++.+.+ +++++++|+++... ++.+=+..+ ..||+++.+.--
T Consensus 353 d~~~~l~~~~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~-~~~~~ivyvSCnp~---tlaRDl~~L~~~gY~l~~i~~~ 425 (443)
T PRK13168 353 NLEEDFTDQPWALGGFDKVLL-DPPRAG--AAEVMQALAK-LGPKRIVYVSCNPA---TLARDAGVLVEAGYRLKRAGML 425 (443)
T ss_pred ChHHhhhhhhhhcCCCCEEEE-CcCCcC--hHHHHHHHHh-cCCCeEEEEEeChH---HhhccHHHHhhCCcEEEEEEEe
Confidence 7754322 1123457998876 444443 3456677766 48899999998532 222223333 468999999755
Q ss_pred CCCCC
Q 023543 260 QWHPD 264 (281)
Q Consensus 260 ~~~~~ 264 (281)
.+-|.
T Consensus 426 DmFP~ 430 (443)
T PRK13168 426 DMFPH 430 (443)
T ss_pred ccCCC
Confidence 54443
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.7e-11 Score=105.44 Aligned_cols=142 Identities=14% Similarity=0.122 Sum_probs=94.1
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
.+..|.+++...... ...+.+|||||||+|.+++.+++. +.+|+++|+ +.+++.+++|+..|+. .+
T Consensus 69 ~Te~Lv~~~l~~~~~---~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~--------~~ 137 (251)
T TIGR03704 69 RTEFLVDEAAALARP---RSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG--------TV 137 (251)
T ss_pred cHHHHHHHHHHhhcc---cCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------EE
Confidence 355666665543210 123458999999999999998864 558999999 8899999999988752 34
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCC--------------------------cHHHHHHHHHHhhCCCcEEEEEE
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEG--------------------------AVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~--------------------------~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...|+.+..... ...+||+|+++-...... .+..+++.+.++|+|+|.+++..
T Consensus 138 ~~~D~~~~l~~~-~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 138 HEGDLYDALPTA-LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred EEeechhhcchh-cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 555554322211 135799988765432110 14578888889999999998876
Q ss_pred eeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 233 ELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 233 ~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
...... .....+. .+|....+..
T Consensus 217 ~~~~~~---~v~~~l~~~g~~~~~~~~ 240 (251)
T TIGR03704 217 SERQAP---LAVEAFARAGLIARVASS 240 (251)
T ss_pred CcchHH---HHHHHHHHCCCCceeeEc
Confidence 543332 3444444 4887766653
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.1e-12 Score=107.55 Aligned_cols=126 Identities=13% Similarity=-0.041 Sum_probs=90.1
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+.+|||+|||+|..+..+++. +.+|+++|+ +++++.+++|+..++.. ++.+...++.+..+..+...+||+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-----NLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-----CEEEEecCHHHHHHHHcCccccce
Confidence 5679999999999999988774 357999999 88999999999988653 577777665111111134567999
Q ss_pred EEEccccCCCC--------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEE
Q 023543 199 VLGSDVIYSEG--------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIG 254 (281)
Q Consensus 199 Iia~d~iy~~~--------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~ 254 (281)
|++.....+.. ..+.+++.+.++|+|+|.++++.... ......++.+. .++.+.
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--HHHHHHHHHHHhCccccc
Confidence 99864322111 25789999999999999999876533 33444556665 366554
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.9e-12 Score=107.39 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=96.6
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
|........|+...+..+.....+.+|||+|||+|..+..+++.+.+|+++|. +.+++.+++|+..++.. ++.+
T Consensus 23 ~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-----~~~~ 97 (224)
T TIGR01983 23 HKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL-----KIEY 97 (224)
T ss_pred HHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-----ceEE
Confidence 33444456777665443222346889999999999999988888889999999 78899999998877542 3555
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
...+..+.... .+.+||+|++..++++......+++.+.+.|+++|.++++...
T Consensus 98 ~~~d~~~~~~~--~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 98 RCTSVEDLAEK--GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred EeCCHHHhhcC--CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 55443322211 1368999999999999899999999999999999998887643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-11 Score=103.48 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
++.+|||+|||+|..+..++..+ .+|+++|+ +.+++.+++|+..++.. .++.+...++.+. .....+||
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~---~~~~~~~D 123 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS----GNVEFVQGDAEAL---PFPDNSFD 123 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc----cCeEEEecccccC---CCCCCCcc
Confidence 57899999999999999888765 68999999 78899999998776443 3566666555432 23346899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+|+++.++++......+++.+.++|+|+|.+++...
T Consensus 124 ~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 124 AVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred EEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 999999998888999999999999999999887654
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-11 Score=93.22 Aligned_cols=102 Identities=23% Similarity=0.306 Sum_probs=77.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++++|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..++.. ++.+...+...... ...++||
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~D 90 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-----NIVIVEGDAPEALE--DSLPEPD 90 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-----ceEEEeccccccCh--hhcCCCC
Confidence 35779999999999999988875 358999999 78899999999988654 45555544221111 1235899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+.... ....+.+++.+.++|+|+|.+++..
T Consensus 91 ~v~~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 91 RVFIGGS---GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEEECCc---chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 9998653 2446789999999999999988764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.7e-12 Score=110.22 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=80.5
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
++++|||+|||+|..+..++..|.+|+++|+ +++++.++++... ..+...|+.+ ..+.+.+||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~----------~~~~~~d~~~---~~~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAA----------DHYLAGDIES---LPLATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCC----------CCEEEcCccc---CcCCCCcEEEEE
Confidence 4679999999999999888888999999999 8899988876421 1233333322 224456899999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++.++++..+...++..+.++|+|||.++++...
T Consensus 109 s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 109 SNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999998889999999999999999999988643
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=105.86 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=75.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC---EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA---QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~---~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..+..+++... +|+++|+ +++++.+++|+..++.. ++.+...|..+... ...+|
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-----~v~~~~~d~~~~~~---~~~~f 147 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-----NVIVIVGDGTQGWE---PLAPY 147 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CeEEEECCcccCCc---ccCCC
Confidence 5788999999999999999988643 5999999 88999999999998764 57777655432211 23589
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+..... ..+.+.+.+.|+|||++++..
T Consensus 148 D~Ii~~~~~------~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 148 DRIYVTAAG------PKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CEEEEcCCc------ccccHHHHHhcCcCcEEEEEE
Confidence 999987554 334566788999999987754
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-12 Score=115.76 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=87.3
Q ss_pred CccccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 117 GMLLLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 117 ~~~~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
+...+++|.|||+|||||++++.+|+.|++ |+++|.+++.+.+++.+..|++. ..+.+..-... +..++-++
T Consensus 55 n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~----~ii~vi~gkvE---di~LP~eK 127 (346)
T KOG1499|consen 55 NKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLE----DVITVIKGKVE---DIELPVEK 127 (346)
T ss_pred chhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCcc----ceEEEeecceE---EEecCccc
Confidence 345799999999999999999999999985 99999999999999999999987 45666654332 22445688
Q ss_pred CcEEEEccc---cCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 196 PDYVLGSDV---IYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 196 fD~Iia~d~---iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
.|+|++-.. +++++.++.++-+-.+.|+|||.++
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 999999555 4457889999999999999999754
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.9e-11 Score=101.22 Aligned_cols=166 Identities=16% Similarity=0.023 Sum_probs=102.0
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCC----------
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGD---------- 171 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~---------- 171 (281)
...|.+|+... ...++++|||+|||.|..++.+|..|.+|+++|+ +.+++.+. .++++...
T Consensus 23 ~~~L~~~~~~~-----~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~---~~~~l~~~~~~~~~~~~~ 94 (218)
T PRK13255 23 NPLLQKYWPAL-----ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF---AENGLTPQTRQSGEFEHY 94 (218)
T ss_pred CHHHHHHHHhh-----CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH---HHcCCCcccccccccccc
Confidence 45566676532 1235789999999999999999999999999999 78888653 22322100
Q ss_pred CCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEeeeC------h---hHH
Q 023543 172 LRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGELRN------D---SVL 240 (281)
Q Consensus 172 ~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~r~------~---~~~ 240 (281)
...++.+...|..+.... ..+.||.|+...++.+ ++.....++.+.++|+|||..++...... + -..
T Consensus 95 ~~~~v~~~~~D~~~l~~~--~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~ 172 (218)
T PRK13255 95 QAGEITIYCGDFFALTAA--DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSD 172 (218)
T ss_pred ccCceEEEECcccCCCcc--cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCH
Confidence 123455555443322111 1257899998776554 55678999999999999997444322111 1 012
Q ss_pred HHHHHHHhcCCeEEEEecCCCCC---C-----CCCCcEEEEEEEec
Q 023543 241 EYFLEAAMKDFVIGRVEQTQWHP---D-----YCSPRVVVYILVKK 278 (281)
Q Consensus 241 ~~fl~~~~~~f~v~~i~~~~~~~---~-----~~~~~~~i~~~~~k 278 (281)
+...+.+...|.++.+....... . ...-...+|.++||
T Consensus 173 ~el~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
T PRK13255 173 EEVEALYAGCFEIELLERQDVLEDNPKFVKKGVSRLNEAVYLLERK 218 (218)
T ss_pred HHHHHHhcCCceEEEeeeccccccCchhhhcCcchhheEEEEEEeC
Confidence 33334444458888886543221 1 12235567777764
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-11 Score=106.20 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=79.5
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++++|||+|||+|.+++.+++. +.+|+++|+ +.+++.+++|+..|+.. .++.+...|+.+. +.+.+||+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~----~~i~~~~~D~~~~----~~~~~fD~ 192 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE----DRVTLIQSDLFAA----LPGRKYDL 192 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECchhhc----cCCCCccE
Confidence 3579999999999999999985 468999999 88999999999999865 4677777665332 23357999
Q ss_pred EEEccccCC--------------C-----------CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLGSDVIYS--------------E-----------GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia~d~iy~--------------~-----------~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+++..... + ..+..+++.+.++|+|||.+++-..
T Consensus 193 Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 193 IVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred EEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 998633211 1 1246788889999999999877554
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-11 Score=103.56 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=75.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..+..+++. +.+|+++|+ +++++.+++|+..++.. .++.+...|..+... .+.+|
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~----~~v~~~~~d~~~~~~---~~~~f 143 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW----GVVEVYHGDGKRGLE---KHAPF 143 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEECCcccCCc---cCCCc
Confidence 46789999999999999888864 358999999 88999999999988764 356666655332211 24689
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|++..... .+.+.+.+.|+|||++++..
T Consensus 144 D~Ii~~~~~~------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 144 DAIIVTAAAS------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cEEEEccCcc------hhhHHHHHhcCcCcEEEEEE
Confidence 9999887763 34467788999999987754
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.5e-11 Score=104.32 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=97.9
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCce
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
++.+..+.+++..... ..+++|||+|||+|.+++.++.. +.+|+++|+ +.+++.+++|+..++.. ++
T Consensus 70 ~~~~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~ 139 (251)
T TIGR03534 70 RPDTEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-----NV 139 (251)
T ss_pred CCChHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----eE
Confidence 4556666666655421 24569999999999999999985 558999999 88999999999988764 57
Q ss_pred EEEEEecCCCCCCCcCCCCCcEEEEccccCCCC--------------------------cHHHHHHHHHHhhCCCcEEEE
Q 023543 177 VVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEG--------------------------AVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~--------------------------~~~~ll~~l~~ll~~~g~~~l 230 (281)
.+...++.+. +.+.+||+|+++.+.+... .+..+++.+.++|+|||.+++
T Consensus 140 ~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 140 TFLQSDWFEP----LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred EEEECchhcc----CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 7777665432 2357899999865433211 124678899999999999988
Q ss_pred EEeeeChhHHHHHHHHHhcCCeEEEE
Q 023543 231 AGELRNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 231 ~~~~r~~~~~~~fl~~~~~~f~v~~i 256 (281)
.........+..++.. .+|....+
T Consensus 216 ~~~~~~~~~~~~~l~~--~gf~~v~~ 239 (251)
T TIGR03534 216 EIGYDQGEAVRALFEA--AGFADVET 239 (251)
T ss_pred EECccHHHHHHHHHHh--CCCCceEE
Confidence 7654443333444422 47753333
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.8e-12 Score=110.21 Aligned_cols=96 Identities=19% Similarity=0.148 Sum_probs=77.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||||||+|.++..++.. +.+|+++|+ +.|++.++++ ++.+...|..+. ...++||
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~----~~~~~fD 91 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------------GVDARTGDVRDW----KPKPDTD 91 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhhC----CCCCCce
Confidence 46789999999999999988876 678999999 8899888652 133444333221 1346899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 92 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 92 VVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 99999999998889999999999999999988764
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=108.16 Aligned_cols=107 Identities=11% Similarity=-0.002 Sum_probs=84.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc----CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~----g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.++.+|||+|||+|..++.+++. +.+|+++|+ ++|++.+++++...+.. .++.+...++.+. ..+.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~----~~v~~~~~d~~~~-----~~~~ 122 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE----IPVEILCNDIRHV-----EIKN 122 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEECChhhC-----CCCC
Confidence 36779999999999998888763 568999999 89999999998765433 3567776555322 2246
Q ss_pred CcEEEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 196 PDYVLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 196 fD~Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
+|+|+++.++++.. ....+++.+.+.|+|||.++++...+.
T Consensus 123 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 123 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 89999988887743 467899999999999999999876553
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=105.85 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=91.5
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEec
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w 183 (281)
...+|+..... ..++.+|||||||+|.++..+++.+++|+++|. +.+++.+++|+..++. .+.+...++
T Consensus 35 ~~~~~l~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~~ 104 (233)
T PRK05134 35 LRLNYIREHAG----GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL------KIDYRQTTA 104 (233)
T ss_pred HHHHHHHHhcc----CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC------ceEEEecCH
Confidence 33456665421 356889999999999999999998999999999 7889999999877653 244555444
Q ss_pred CCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 184 GDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 184 ~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
.+... ....+||+|+++.++.+......+++.+.++|+|+|.++++...
T Consensus 105 ~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 105 EELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred HHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 32211 13368999999999999888999999999999999999887643
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.6e-11 Score=101.25 Aligned_cols=151 Identities=14% Similarity=-0.043 Sum_probs=96.9
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCC---------
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGD--------- 171 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~--------- 171 (281)
....|.+|+.... ..++.+|||+|||.|.-++.+|..|.+|+++|+ +.+++.+.. .+++...
T Consensus 19 p~~~l~~~~~~l~-----~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~ 90 (213)
T TIGR03840 19 VNPLLVKHWPALG-----LPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTR 90 (213)
T ss_pred CCHHHHHHHHhhC-----CCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceecccccee
Confidence 3566777776420 136789999999999999999999999999999 778886532 2222100
Q ss_pred -CCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEeeeC------h---hH
Q 023543 172 -LRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGELRN------D---SV 239 (281)
Q Consensus 172 -~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~r~------~---~~ 239 (281)
...++.+...|..+.... ..++||.|+...++.+ ++..+.+++.+.++|+|||.+++...... + -.
T Consensus 91 ~~~~~v~~~~~D~~~~~~~--~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~ 168 (213)
T TIGR03840 91 YRAGNIEIFCGDFFALTAA--DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVS 168 (213)
T ss_pred eecCceEEEEccCCCCCcc--cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCC
Confidence 113455556544322111 1357999998776654 45567899999999999997544432211 1 11
Q ss_pred HHHHHHHHhcCCeEEEEecCCCC
Q 023543 240 LEYFLEAAMKDFVIGRVEQTQWH 262 (281)
Q Consensus 240 ~~~fl~~~~~~f~v~~i~~~~~~ 262 (281)
.+...+.+..+|+++.+......
T Consensus 169 ~~eL~~~f~~~~~i~~~~~~~~~ 191 (213)
T TIGR03840 169 PAEVEALYGGHYEIELLESRDVL 191 (213)
T ss_pred HHHHHHHhcCCceEEEEeecccc
Confidence 22233444457888888765544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-11 Score=110.19 Aligned_cols=126 Identities=16% Similarity=0.130 Sum_probs=91.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++.+|||||||+|.+++.+++. +.+|+++|+ +++++.++++...+ ++.+...+.. +..+.+.+||+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--------~i~~i~gD~e---~lp~~~~sFDv 181 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--------ECKIIEGDAE---DLPFPTDYADR 181 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--------CCeEEeccHH---hCCCCCCceeE
Confidence 5679999999999988887763 468999999 88999999876432 3445554432 22334568999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh--------------hHHHHHHHHHhc-CCeEEEEec
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND--------------SVLEYFLEAAMK-DFVIGRVEQ 258 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~--------------~~~~~fl~~~~~-~f~v~~i~~ 258 (281)
|+++.++++..+.+.+++.+.++|+|||.+++....... ...+.+.+.+.+ ||....+.+
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 999999988888899999999999999998776532211 012344455554 898666643
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-11 Score=105.76 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=77.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||||||+|.++..++.. +.+|+++|+ +.+++.++++.. ++.+...|..+. ....+||
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----------~~~~~~~d~~~~----~~~~~fD 95 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----------DCQFVEADIASW----QPPQALD 95 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----------CCeEEECchhcc----CCCCCcc
Confidence 45789999999999999888874 568999999 889999987642 234444332211 1335899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 96 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 96 LIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 99999999988889999999999999999988864
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-11 Score=103.27 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=79.9
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
+..+..++...++ ..++.+|||+|||+|..+..+++. + .+|+++|+ +++++.+++|++.++.. ++.+
T Consensus 61 ~p~~~~~~~~~l~----~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-----~v~~ 131 (212)
T PRK13942 61 AIHMVAIMCELLD----LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-----NVEV 131 (212)
T ss_pred cHHHHHHHHHHcC----CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CeEE
Confidence 4444445544322 357889999999999999888875 3 58999999 88999999999988754 5666
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...|-. .......+||+|++.... ..+.+.+.+.|+|||++++..
T Consensus 132 ~~gd~~---~~~~~~~~fD~I~~~~~~------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 132 IVGDGT---LGYEENAPYDRIYVTAAG------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EECCcc---cCCCcCCCcCEEEECCCc------ccchHHHHHhhCCCcEEEEEE
Confidence 664422 211234689999886554 334456777899999977753
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-10 Score=107.52 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=94.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..+++|||||||+|.+++.++..+.+|+++|+ +.+++.+++|++.|+.. ++.+...+..+.... ...+||+|
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~-----~~~~~~~d~~~~~~~--~~~~~D~v 304 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD-----NLSFAALDSAKFATA--QMSAPELV 304 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHHHHh--cCCCCCEE
Confidence 45679999999999999999998889999999 88999999999999764 677777665322111 12459987
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPD 264 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~ 264 (281)
+. |.-|. ...+.+++.+.. ++|++++|+++. +.++.+=+..+ .||+++.+.--.+-|.
T Consensus 305 i~-DPPr~-G~~~~~l~~l~~-~~p~~ivyvsc~---p~TlaRDl~~L-~gy~l~~~~~~DmFPq 362 (374)
T TIGR02085 305 LV-NPPRR-GIGKELCDYLSQ-MAPKFILYSSCN---AQTMAKDIAEL-SGYQIERVQLFDMFPH 362 (374)
T ss_pred EE-CCCCC-CCcHHHHHHHHh-cCCCeEEEEEeC---HHHHHHHHHHh-cCceEEEEEEeccCCC
Confidence 76 45554 556777777765 688999999875 33333223334 6899998875554443
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=104.43 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=83.7
Q ss_pred CeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
.+|||+|||+|.+++.++... .+|+++|+ +++++.+++|+..++.. .++.+...||.+.. ...+||+|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~----~~v~~~~~d~~~~~----~~~~fDlIv 187 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE----HRVEFIQSNLFEPL----AGQKIDIIV 187 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECchhccC----cCCCccEEE
Confidence 699999999999999999854 58999999 88999999999998764 35888887765422 223799998
Q ss_pred Ecccc--------------CCC-----------CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHH
Q 023543 201 GSDVI--------------YSE-----------GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFL 244 (281)
Q Consensus 201 a~d~i--------------y~~-----------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl 244 (281)
++... |.+ ..+..+++.+.++|+|||.+++.........+..++
T Consensus 188 sNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~ 256 (284)
T TIGR00536 188 SNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELL 256 (284)
T ss_pred ECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHH
Confidence 85321 111 136678899999999999987766544444444433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-11 Score=104.32 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=78.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|.++..++..+.+|+++|+ ++++..+++++..++.. .++.+...++.+. . .+||+|
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~----~~i~~~~~d~~~~-----~-~~fD~i 123 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVA----GNVEFEVNDLLSL-----C-GEFDIV 123 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEECChhhC-----C-CCcCEE
Confidence 46889999999999999999998889999999 88999999998877543 3566666554321 1 679999
Q ss_pred EEccccCCC--CcHHHHHHHHHHhhCCCcEEEE
Q 023543 200 LGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 200 ia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l 230 (281)
++++++++. .....+++.+.+++++++.+.+
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999998663 4567788888888876655443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-10 Score=106.26 Aligned_cols=166 Identities=14% Similarity=0.066 Sum_probs=112.1
Q ss_pred CCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hh
Q 023543 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PD 154 (281)
Q Consensus 76 ~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~ 154 (281)
+|..+.++.++++|+.... ..+..|.+++...+. ..+.+||||+||+|.+++.+++...+|+++|. +.
T Consensus 171 ~~~~~~~~~~~~sF~Q~N~------~~~e~l~~~v~~~~~-----~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ 239 (362)
T PRK05031 171 AGREFIYRQVENSFTQPNA------AVNEKMLEWALDATK-----GSKGDLLELYCGNGNFTLALARNFRRVLATEISKP 239 (362)
T ss_pred CCcEEEEEeCCCCeeccCH------HHHHHHHHHHHHHhh-----cCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHH
Confidence 4545677888877665443 345666666655421 12357999999999999999988778999999 88
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCc-------------CCCCCcEEEEccccCCCCcHHHHHHHHHHh
Q 023543 155 RLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL-------------IQPLPDYVLGSDVIYSEGAVGDLLDTLLQL 221 (281)
Q Consensus 155 ~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~-------------~~~~fD~Iia~d~iy~~~~~~~ll~~l~~l 221 (281)
+++.+++|+..|++. ++.+...|..+...... ...+||+|+. |.-+ ....+.+++.+.+
T Consensus 240 ai~~a~~N~~~~~~~-----~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~l-DPPR-~G~~~~~l~~l~~- 311 (362)
T PRK05031 240 SVAAAQYNIAANGID-----NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFV-DPPR-AGLDDETLKLVQA- 311 (362)
T ss_pred HHHHHHHHHHHhCCC-----cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEE-CCCC-CCCcHHHHHHHHc-
Confidence 999999999999875 67777766533211100 0225898776 5555 4556777777755
Q ss_pred hCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCCC
Q 023543 222 CGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDY 265 (281)
Q Consensus 222 l~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~ 265 (281)
+++++|+++.. .++.+=+..+.++|+++.+.--.+-|.-
T Consensus 312 --~~~ivyvSC~p---~tlarDl~~L~~gY~l~~v~~~DmFPqT 350 (362)
T PRK05031 312 --YERILYISCNP---ETLCENLETLSQTHKVERFALFDQFPYT 350 (362)
T ss_pred --cCCEEEEEeCH---HHHHHHHHHHcCCcEEEEEEEcccCCCC
Confidence 78899998865 2222223333358999998755554443
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-11 Score=111.12 Aligned_cols=136 Identities=15% Similarity=0.061 Sum_probs=89.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-CcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~~~~~fD 197 (281)
.++++|||+|||||.+++.++..|+ +|+++|+ +.+++.+++|+..|++.. .++.+...|..+.... ...+.+||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~---~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL---SKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---CcEEEEEccHHHHHHHHHhcCCCCC
Confidence 4689999999999999998887776 7999999 889999999999998741 2567776554322111 01245799
Q ss_pred EEEEccccCCCC---------cHHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHh--cCCeEEEEecC
Q 023543 198 YVLGSDVIYSEG---------AVGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAM--KDFVIGRVEQT 259 (281)
Q Consensus 198 ~Iia~d~iy~~~---------~~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~--~~f~v~~i~~~ 259 (281)
+|++....+... .+..++....++|+|||.++++... -..+.+..++.... .+-++..+...
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~ 370 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQF 370 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 998544433221 3566777788999999988765432 22233333333222 24555555443
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-10 Score=96.84 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=88.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|.+++.+++. +.+|+++|. +++++.+++|++.++.. ++.+...+..+..+. ..+.+|
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-----~v~~~~~d~~~~~~~--~~~~~d 111 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-----NVEVIEGSAPECLAQ--LAPAPD 111 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----CeEEEECchHHHHhh--CCCCCC
Confidence 46789999999999999988864 468999999 88999999999988754 566665443221111 113356
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-hHHHHHHHHHh-cCCeEEEEecCCCC
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND-SVLEYFLEAAM-KDFVIGRVEQTQWH 262 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-~~~~~fl~~~~-~~f~v~~i~~~~~~ 262 (281)
.+... ....++.+++.+.++|+|||.+++....... ......++.+. .++++.++.-..+.
T Consensus 112 ~v~~~----~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (196)
T PRK07402 112 RVCIE----GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNRLE 174 (196)
T ss_pred EEEEE----CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhhcc
Confidence 55432 1345688999999999999998877654322 11233344443 47777777554443
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-11 Score=101.25 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=82.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..+.+|||||||+|.+|+.++.. ..+|+++|. +++++.+++|++.|+.. ++.+..-|+.+.... ...+||+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-----~v~~~~~D~~~~l~~--~~~~fDl 124 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-----NARVVNTNALSFLAQ--PGTPHNV 124 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-----cEEEEEchHHHHHhh--cCCCceE
Confidence 46789999999999999965444 458999999 88999999999999764 577777665432211 2346998
Q ss_pred EEEccccCCCCcHHHHHHHHHHh--hCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQL--CGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~l--l~~~g~~~l~~~~r 235 (281)
|++ |+.|.....+.+++.+... +++++++|+.+..+
T Consensus 125 V~~-DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 125 VFV-DPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred EEE-CCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 875 4558888888888988874 78999999887654
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-10 Score=97.65 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=69.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|..+..++.. +.+|+++|+ +++++.+++|.. .+.+...+..+ .+.+.+||
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~----~~~~~sfD 107 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFD----PFKDNFFD 107 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccC----CCCCCCEE
Confidence 46779999999999999888875 578999999 889999987642 23334434322 23467899
Q ss_pred EEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|++..++++. ..+..+++.+.+.+ ++.++++.
T Consensus 108 ~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 108 LVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 99999999774 34666777777765 34555543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-10 Score=110.24 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=87.0
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++.+|||+|||+|.+++.+++. +++|+++|+ +.+++.+++|+..+++. .++.+...+|.+. +...+||+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~----~~v~~~~~D~~~~----~~~~~fDl 209 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT----DRIQIIHSNWFEN----IEKQKFDF 209 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc----cceeeeecchhhh----CcCCCccE
Confidence 3468999999999999988763 568999999 88999999999988765 4677777665432 22357999
Q ss_pred EEEccccCC---------------C-----------CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCe
Q 023543 199 VLGSDVIYS---------------E-----------GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 199 Iia~d~iy~---------------~-----------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~ 252 (281)
|+++-.... + ..+..+++.+.++|+|+|.+++.........+...+.. .+|.
T Consensus 210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~--~g~~ 287 (506)
T PRK01544 210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLD--HGYN 287 (506)
T ss_pred EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHh--cCCC
Confidence 998543221 1 12456788888999999998876544433333333322 4776
Q ss_pred EEEE
Q 023543 253 IGRV 256 (281)
Q Consensus 253 v~~i 256 (281)
...+
T Consensus 288 ~~~~ 291 (506)
T PRK01544 288 IESV 291 (506)
T ss_pred ceEE
Confidence 4444
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-10 Score=99.83 Aligned_cols=138 Identities=15% Similarity=0.185 Sum_probs=93.0
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCce
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
.+.+..+.+++.... ...++.+|||+|||+|.+++.++... .+|+++|+ +.+++.+++|+. +... .++
T Consensus 90 r~~te~l~~~~~~~~----~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~----~~i 160 (275)
T PRK09328 90 RPETEELVEWALEAL----LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLG----ARV 160 (275)
T ss_pred CCCcHHHHHHHHHhc----cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCC----CcE
Confidence 344566777665321 12456799999999999999998864 68999999 889999999998 3222 367
Q ss_pred EEEEEecCCCCCCCcCCCCCcEEEEccccCCC--------------------------CcHHHHHHHHHHhhCCCcEEEE
Q 023543 177 VVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE--------------------------GAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~--------------------------~~~~~ll~~l~~ll~~~g~~~l 230 (281)
.+...++.+.. .+.+||+|+++...... ..+..+++.+.++|+|||.+++
T Consensus 161 ~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 161 EFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred EEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 77777764322 24689999985432211 1246788888899999999888
Q ss_pred EEeeeChhHHHHHHHHHhcCCe
Q 023543 231 AGELRNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 231 ~~~~r~~~~~~~fl~~~~~~f~ 252 (281)
.........+..++. ..+|.
T Consensus 237 e~g~~~~~~~~~~l~--~~gf~ 256 (275)
T PRK09328 237 EIGYDQGEAVRALLA--AAGFA 256 (275)
T ss_pred EECchHHHHHHHHHH--hCCCc
Confidence 654333333333332 24775
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-11 Score=101.47 Aligned_cols=110 Identities=21% Similarity=0.179 Sum_probs=82.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..+++||||+||+|.+|+.++.+|+ +|+++|. +.+++.+++|++.|+.. .++.+...|..+.........+++.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~----~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG----EQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc----ccEEEEehhHHHHHHHhhccCCCce
Confidence 5789999999999999999999988 6999999 88999999999999865 3566666543221111111234556
Q ss_pred EEEccccCCCCcHHHHHHHHHH--hhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQ--LCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~--ll~~~g~~~l~~~~ 234 (281)
||..|+.|.....+.++..+.+ +++++|.+++-...
T Consensus 124 vv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 124 VIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 7778899988888888887766 57888877665543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=99.52 Aligned_cols=99 Identities=15% Similarity=0.099 Sum_probs=76.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++|+..++.. ++.+...+..+.. ....+||+|
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~---~~~~~fD~I 148 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLH-----NVSVRHGDGWKGW---PAYAPFDRI 148 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCC-----ceEEEECCcccCC---CcCCCcCEE
Confidence 46789999999999999888887779999999 88999999999988664 4666664432211 123689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
++.... ..+.+.+.+.|+|||.+++...
T Consensus 149 ~~~~~~------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAA------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCc------hhhhHHHHHhcCCCcEEEEEEc
Confidence 986554 3445677889999999887654
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-10 Score=93.87 Aligned_cols=58 Identities=36% Similarity=0.590 Sum_probs=50.9
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEec
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w 183 (281)
.++|++|+|||||||.+|+.++.+|++ |+++|+ +++++.+++|+.++. +++.+..-|.
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~------g~v~f~~~dv 102 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL------GDVEFVVADV 102 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC------CceEEEEcch
Confidence 578999999999999999999999985 999999 999999999999843 4577777554
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-11 Score=101.95 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=76.7
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
.++||+|||.|.+...+|..+.+++++|+ +.+++.+++.+... .++.+...+.- ...+..+||+|+.+
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~-------~~V~~~~~dvp----~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL-------PHVEWIQADVP----EFWPEGRFDLIVLS 113 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TT----T---SS-EEEEEEE
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC-------CCeEEEECcCC----CCCCCCCeeEEEEe
Confidence 58999999999999999999889999999 88999999877542 36888886542 23466899999999
Q ss_pred cccCCCC---cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 203 DVIYSEG---AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 203 d~iy~~~---~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.++|+.. .+..++..+...|+|||.++++..
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9999965 466788888899999999988765
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-10 Score=102.94 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=92.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.+++.+|..+.+|+++|+ +.+++.+++|++.|++. ++.+...|..+.... ...+||+|
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~-----~v~~~~~D~~~~~~~--~~~~~D~V 244 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLT-----NVQFQALDSTQFATA--QGEVPDLV 244 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEcCHHHHHHh--cCCCCeEE
Confidence 35789999999999999999999999999999 89999999999999864 677777665332111 23469998
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPD 264 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~ 264 (281)
+.... + ......+++.+.+ ++|++++|+++...... +=+..+ .+|+++.+.--.+-|.
T Consensus 245 v~dPP-r-~G~~~~~~~~l~~-~~~~~ivyvsc~p~t~~---rd~~~l-~~y~~~~~~~~DmFP~ 302 (315)
T PRK03522 245 LVNPP-R-RGIGKELCDYLSQ-MAPRFILYSSCNAQTMA---KDLAHL-PGYRIERVQLFDMFPH 302 (315)
T ss_pred EECCC-C-CCccHHHHHHHHH-cCCCeEEEEECCcccch---hHHhhc-cCcEEEEEEEeccCCC
Confidence 87544 2 2334566666655 57888888887654321 112223 6899988865544443
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=104.63 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=74.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.+++.+++.|.+|+++|+ +.|++.+++|+...........++.+...|+.+ .+.+||+|
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~------l~~~fD~V 216 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES------LSGKYDTV 216 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh------cCCCcCEE
Confidence 46789999999999999999999999999999 889999999987653210001245565555421 24689999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEE
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++.+++++... ...+++.+.++ .+++ ++++.
T Consensus 217 v~~~vL~H~p~~~~~~ll~~l~~l-~~g~-liIs~ 249 (315)
T PLN02585 217 TCLDVLIHYPQDKADGMIAHLASL-AEKR-LIISF 249 (315)
T ss_pred EEcCEEEecCHHHHHHHHHHHHhh-cCCE-EEEEe
Confidence 99999876432 45567777654 4444 45554
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=105.98 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=78.4
Q ss_pred CeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
++|||+|||+|.+++.+++. +.+|+++|+ +.+++.+++|++.++.. .++.+...|+.+. +...+||+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~----~~i~~~~~D~~~~----l~~~~fDlIv 206 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE----DRVTLIESDLFAA----LPGRRYDLIV 206 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----CcEEEEECchhhh----CCCCCccEEE
Confidence 68999999999999999875 468999999 88999999999998765 4677777665332 2234799999
Q ss_pred Ecccc--------------CCC-----------CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 201 GSDVI--------------YSE-----------GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 201 a~d~i--------------y~~-----------~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
++.+. |.+ ..+..+++.+.++|+|||.+++...
T Consensus 207 sNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 207 SNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 86332 111 1246788999999999999887543
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=107.02 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=78.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|.+++.+++ .|.+|+++|+ +++++.+++++.. . .+.+...++.+ + ..+||.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l------~v~~~~~D~~~-----l-~~~fD~ 231 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--L------PVEIRLQDYRD-----L-NGQFDR 231 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--C------eEEEEECchhh-----c-CCCCCE
Confidence 4678999999999999998887 5789999999 8899999988742 1 24555544432 1 367999
Q ss_pred EEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|++..++++. ...+.+++.+.++|+|||.+++...
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999888774 4568899999999999999888653
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=99.13 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=81.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..+..++.. +.+|+++|+ +.+++.++++..... .++.+...+... ..+.+.+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~------~~~~~~~~d~~~---~~~~~~~~ 88 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG------PNVEFVRGDADG---LPFPDGSF 88 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC------CceEEEeccccc---CCCCCCCc
Confidence 46789999999999999888864 358999999 788999988833221 356666655432 22345789
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|++..++.+..+...+++.+.++|+|||.+++..
T Consensus 89 D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 89 DAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred eEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 999999999988889999999999999999988765
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=98.54 Aligned_cols=126 Identities=10% Similarity=-0.057 Sum_probs=87.7
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+.+|||||||+|..++.+|+. ..+|+++|+ +++++.+++|+..+++. ++.+...+..+.....+.+..+|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-----ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-----NLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-----CEEEEccCHHHHHHhhCCCCceeE
Confidence 4569999999999999988875 457999999 88999999999887664 677777665332211223357898
Q ss_pred EEEccccCCCC--------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc--CCeEE
Q 023543 199 VLGSDVIYSEG--------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK--DFVIG 254 (281)
Q Consensus 199 Iia~d~iy~~~--------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~--~f~v~ 254 (281)
|+..-..-++. ..+.+++.+.++|+|||.+++..... ...+.+++.+.. +|...
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~--~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE--PLFEDMLKVLSENDLFENT 154 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHhCCCeEec
Confidence 88753322211 12679999999999999998876433 233445555554 35543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-10 Score=97.94 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=82.1
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..+|.+|||+|||+|..++.++... .+|+++|+ ++|++.+.+++... .++.+...|-.+.........+|
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-------~nv~~i~~D~~~~~~~~~l~~~~ 142 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-------KNIIPILADARKPERYAHVVEKV 142 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-------CCcEEEECCCCCcchhhhccccC
Confidence 3568899999999999999998853 47999999 88998887777643 23444443322110000112459
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee------Ch-hHHHHHHHHHh-cCCeEEEEec
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR------ND-SVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r------~~-~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
|+|++. .- .+.....+++.+.++|||||.++++.+.+ .+ ...+...+.+. .||++....+
T Consensus 143 D~i~~d-~~-~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 143 DVIYQD-VA-QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred CEEEEC-CC-ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 988842 21 12233456899999999999999843222 11 11222334444 3898777654
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.1e-10 Score=102.22 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=109.9
Q ss_pred CCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hh
Q 023543 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PD 154 (281)
Q Consensus 76 ~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~ 154 (281)
.|..+++.+++++|+.... .....|.+++.+.+. ..+++|||||||+|.+++.+++...+|+++|+ ++
T Consensus 162 ~~~~~~~~~~~~~F~Q~N~------~~~~~l~~~v~~~~~-----~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~ 230 (353)
T TIGR02143 162 AGREFIYRQVENSFTQPNA------AVNIKMLEWACEVTQ-----GSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKP 230 (353)
T ss_pred CCeEEEEEECCCCcccCCH------HHHHHHHHHHHHHhh-----cCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHH
Confidence 4555788888887765543 234455555554321 22347999999999999999988779999999 89
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-----c---C-----CCCCcEEEEccccCCCCcHHHHHHHHHHh
Q 023543 155 RLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-----L---I-----QPLPDYVLGSDVIYSEGAVGDLLDTLLQL 221 (281)
Q Consensus 155 ~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-----~---~-----~~~fD~Iia~d~iy~~~~~~~ll~~l~~l 221 (281)
+++.+++|+..|++. ++.+...+..+..... + . ..+||+|+. |.- .....+.+++.+.+
T Consensus 231 av~~a~~n~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~l-DPP-R~G~~~~~l~~l~~- 302 (353)
T TIGR02143 231 SVNAAQYNIAANNID-----NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFV-DPP-RAGLDPDTCKLVQA- 302 (353)
T ss_pred HHHHHHHHHHHcCCC-----cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEE-CCC-CCCCcHHHHHHHHc-
Confidence 999999999999875 5777776654321110 0 0 123798776 554 34556777777654
Q ss_pred hCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCC
Q 023543 222 CGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPD 264 (281)
Q Consensus 222 l~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~ 264 (281)
+++++|+++... ++.+=+..+.++|+++.+.--.+-|.
T Consensus 303 --~~~ivYvsC~p~---tlaRDl~~L~~~Y~l~~v~~~DmFP~ 340 (353)
T TIGR02143 303 --YERILYISCNPE---TLKANLEQLSETHRVERFALFDQFPY 340 (353)
T ss_pred --CCcEEEEEcCHH---HHHHHHHHHhcCcEEEEEEEcccCCC
Confidence 789999987643 32222333445699888875554444
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=104.57 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=84.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..++.+++.. .+++++|.+.+++.+++|+...+.. +++.+...|..+ ..+ +++|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~----~rv~~~~~d~~~---~~~--~~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVA----DRMRGIAVDIYK---ESY--PEADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCcc----ceEEEEecCccC---CCC--CCCCE
Confidence 356799999999999999988854 5799999999999999999998765 567777755432 222 45799
Q ss_pred EEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|+.+.++|+.. ....+++.+.+.|+|||++++....
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 99999988653 3568999999999999999988653
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-11 Score=93.37 Aligned_cols=92 Identities=25% Similarity=0.288 Sum_probs=70.2
Q ss_pred EEEECCCcCHHHHHHHHc---C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 126 IVELGSGCGLVGCIAALL---G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 126 VLELGcGtG~~~i~~a~~---g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
|||||||+|.....++.. + .+++++|+ +++++.++++....+. ++++...|..+ ....+++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~------~~~~~~~D~~~---l~~~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP------KVRFVQADARD---LPFSDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT------TSEEEESCTTC---HHHHSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC------ceEEEECCHhH---CcccCCCeeEE
Confidence 799999999999888875 3 68999999 8899999999887543 46677766543 22346799999
Q ss_pred EEccc-cCC--CCcHHHHHHHHHHhhCCCc
Q 023543 200 LGSDV-IYS--EGAVGDLLDTLLQLCGTQT 226 (281)
Q Consensus 200 ia~d~-iy~--~~~~~~ll~~l~~ll~~~g 226 (281)
+++.. +++ ++....+++.+.++++|||
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99544 444 4578999999999999987
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=101.05 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=79.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..+++|||||||+|..+..++..+. +|+++|+ +.+++.++.+... ++.+...+..+ ..+.+++||
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---------~~~~~~~d~~~---~~~~~~~fD 100 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---------NVQFICGDAEK---LPLEDSSFD 100 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---------CCeEEecchhh---CCCCCCcee
Confidence 4567999999999999998888664 5899999 7788887765431 34455544432 223457899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+|+++.++++..+...+++.+.++|+|||.++++..
T Consensus 101 ~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 101 LIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred EEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999999999988899999999999999999988754
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.1e-10 Score=106.95 Aligned_cols=144 Identities=17% Similarity=0.155 Sum_probs=98.0
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE 180 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~ 180 (281)
.+..+.+.+...+. ..++.+|||+|||+|.+++.+|+.+.+|+++|+ +++++.+++|+..|+.. ++.+..
T Consensus 276 ~~~~l~~~~~~~l~----~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~-----nv~~~~ 346 (431)
T TIGR00479 276 QNEKLVDRALEALE----LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIA-----NVEFLA 346 (431)
T ss_pred HHHHHHHHHHHHhc----cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCC-----ceEEEe
Confidence 34444555544321 235679999999999999999998889999999 88999999999999865 678877
Q ss_pred EecCCCCCC-CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 181 LTWGDDPDQ-DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 181 l~w~~~~~~-~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
.|+.+.... ...+.+||+|+.. .-+. .....+++.+.+ +++++.+|+++. +.++..-+..+. .||+++.+.-
T Consensus 347 ~d~~~~l~~~~~~~~~~D~vi~d-PPr~-G~~~~~l~~l~~-l~~~~ivyvsc~---p~tlard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 347 GTLETVLPKQPWAGQIPDVLLLD-PPRK-GCAAEVLRTIIE-LKPERIVYVSCN---PATLARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred CCHHHHHHHHHhcCCCCCEEEEC-cCCC-CCCHHHHHHHHh-cCCCEEEEEcCC---HHHHHHHHHHHHHCCeeEEEEEE
Confidence 665432111 1223569988853 3332 334677777665 688888888865 444433344444 5798888764
Q ss_pred CC
Q 023543 259 TQ 260 (281)
Q Consensus 259 ~~ 260 (281)
-.
T Consensus 421 ~D 422 (431)
T TIGR00479 421 VD 422 (431)
T ss_pred ec
Confidence 33
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-10 Score=103.59 Aligned_cols=107 Identities=19% Similarity=0.116 Sum_probs=81.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.+.+.++..+++|+++|+ +.|++.++.|++.++.. ++.+...|.. ...+...+||+|
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-----~i~~~~~D~~---~l~~~~~~~D~I 252 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-----DFFVKRGDAT---KLPLSSESVDAI 252 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-----CCeEEecchh---cCCcccCCCCEE
Confidence 46789999999999999999899999999999 88999999999998775 3445444432 222334689988
Q ss_pred EEccccCCC----------CcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 200 LGSDVIYSE----------GAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 200 ia~d~iy~~----------~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
++..+ |.. ..+..+++.+.+.|+|||.+++..+...
T Consensus 253 v~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 253 ATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred EECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 87533 321 2368899999999999999887766543
|
This family is found exclusively in the Archaea. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=101.46 Aligned_cols=105 Identities=22% Similarity=0.190 Sum_probs=75.6
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++|++|||||||.|..+.-++..|++ |+|+|. ..-. ++-.+-+.-+.. ...+....+..++... ...||
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~lg~--~~~~~~lplgvE~Lp~----~~~FD 184 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFLGQ--DPPVFELPLGVEDLPN----LGAFD 184 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHhCC--CccEEEcCcchhhccc----cCCcC
Confidence 479999999999999999999999986 999998 4332 222222222210 0123333333322211 46899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|++..|+||..+.-..++.++..|++||.+++-.
T Consensus 185 tVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 185 TVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 99999999999999999999999999999887543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=99.69 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=70.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
++.+|||||||||.++..+++. +.+|+++|+ ++|++.++++. . ....+. ....+.+.+||+|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-----~--------~~~~d~---~~lp~~d~sfD~v 114 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-----D--------KVVGSF---EALPFRDKSFDVV 114 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-----c--------eEEech---hhCCCCCCCEEEE
Confidence 4679999999999999988887 679999999 88999887531 0 122222 2233556889999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQ 225 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~ 225 (281)
+++.++++..+.+.+++.+.+.|+|.
T Consensus 115 ~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 115 MSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred EecChhhccCCHHHHHHHHHHHhcCc
Confidence 99999999999999999999999994
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-09 Score=89.73 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=89.7
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC-C
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP-L 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~-~ 195 (281)
+.+|.+++|+|||||.+++.++..+ .+|+++|. ++++++.++|+++.+.+ ++.+..-+ . +..+.+. .
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-----n~~vv~g~---A-p~~L~~~~~ 102 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-----NLEVVEGD---A-PEALPDLPS 102 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-----cEEEEecc---c-hHhhcCCCC
Confidence 3578899999999999999999654 47999999 89999999999999865 77777733 2 2223333 5
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCC-eEEEEe
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDF-VIGRVE 257 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f-~v~~i~ 257 (281)
||.|.-... ..++.+++++...|+|||++++-...-. .....++.+. .+| ++.++.
T Consensus 103 ~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE--~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 103 PDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE--TLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred CCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH--HHHHHHHHHHHcCCceEEEEE
Confidence 888776544 4579999999999999999876554322 2223344444 366 666653
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-09 Score=101.89 Aligned_cols=166 Identities=19% Similarity=0.178 Sum_probs=105.8
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCc
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGS 175 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~ 175 (281)
-.++..++..+. ..+|.+|||+|||+|..++.++.. ..+|+++|+ +.+++.+++|++.++.. +
T Consensus 238 d~~s~l~~~~l~--------~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-----~ 304 (434)
T PRK14901 238 DRSAQLVAPLLD--------PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-----S 304 (434)
T ss_pred CHHHHHHHHHhC--------CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-----e
Confidence 344555555542 246889999999999999888864 247999999 88999999999999875 5
Q ss_pred eEEEEEecCCCCCC-CcCCCCCcEEEEc------cccCC-CC---------------cHHHHHHHHHHhhCCCcEEEEEE
Q 023543 176 AVVTELTWGDDPDQ-DLIQPLPDYVLGS------DVIYS-EG---------------AVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 176 i~~~~l~w~~~~~~-~~~~~~fD~Iia~------d~iy~-~~---------------~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+.+...|..+.... .....+||.|+.- .++.. ++ ....++..+.++|+|||+++.+.
T Consensus 305 v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 305 IKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 66666553322110 0124579999962 22222 11 14678899999999999876553
Q ss_pred -ee---eChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCCcEEEEEEEecC
Q 023543 233 -EL---RNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCSPRVVVYILVKKL 279 (281)
Q Consensus 233 -~~---r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~~~~~i~~~~~k~ 279 (281)
.. .+...+..|++. ..+|.+.......+.......+|.+-.++|++
T Consensus 385 csi~~~Ene~~v~~~l~~-~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k~~ 434 (434)
T PRK14901 385 CTLHPAENEAQIEQFLAR-HPDWKLEPPKQKIWPHRQDGDGFFMAVLRKKS 434 (434)
T ss_pred CCCChhhHHHHHHHHHHh-CCCcEecCCCCccCCCCCCCCcEEEEEEEeCC
Confidence 33 233455556543 23676543211023333345788888887753
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-09 Score=94.37 Aligned_cols=129 Identities=11% Similarity=0.110 Sum_probs=81.2
Q ss_pred Cceecch--HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhhcC
Q 023543 96 GSVMWDS--GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 96 G~~~W~~--s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
-.++|+- |.+.|..+... +. ....++.+|||||||+|..+..++.. + ..|+++|+ +.+++.+...+...
T Consensus 106 eyR~w~p~rSKlaa~i~~g~-~~-l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--- 180 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGV-AN-IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--- 180 (293)
T ss_pred eeeeeCCcccHHHHHHHCCc-ce-eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---
Confidence 4889986 55555554432 11 12457889999999999999998875 3 47999999 66654443332221
Q ss_pred CCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 170 GDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 170 ~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
.++.+..-|...........+.||+|++.-. .+.....++..+.++|||+|.+++....+
T Consensus 181 ----~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~ 240 (293)
T PTZ00146 181 ----PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKAN 240 (293)
T ss_pred ----CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEecc
Confidence 1344444333221111112357999876542 45556677778999999999999865443
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-08 Score=97.81 Aligned_cols=142 Identities=16% Similarity=0.179 Sum_probs=93.6
Q ss_pred ecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCC
Q 023543 99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRG 174 (281)
Q Consensus 99 ~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~ 174 (281)
.-.++.+++.++. ..++.+|||+|||+|..++.++.. +.+|+++|+ +.+++.+++|++.+++.
T Consensus 235 qd~~s~lv~~~l~--------~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~----- 301 (444)
T PRK14902 235 QDESSMLVAPALD--------PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT----- 301 (444)
T ss_pred EChHHHHHHHHhC--------CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----
Confidence 3445666666553 246789999999999999988864 458999999 88999999999998875
Q ss_pred ceEEEEEecCCCCCCCcCCCCCcEEEEccccCCC---------------C-------cHHHHHHHHHHhhCCCcEEEEEE
Q 023543 175 SAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE---------------G-------AVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 175 ~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~---------------~-------~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++.+...|..+... .+ ..+||+|++.-..+.. . ....+++.+.++|+|||.++.+.
T Consensus 302 ~v~~~~~D~~~~~~-~~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 302 NIETKALDARKVHE-KF-AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred eEEEEeCCcccccc-hh-cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 47777665433211 11 2579999863321111 1 12467889999999999977653
Q ss_pred -ee---eChhHHHHHHHHHhcCCeEEEE
Q 023543 233 -EL---RNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 233 -~~---r~~~~~~~fl~~~~~~f~v~~i 256 (281)
.. .+....+.|++. ...|.+..+
T Consensus 380 cs~~~~Ene~vv~~~l~~-~~~~~~~~~ 406 (444)
T PRK14902 380 CTIEKEENEEVIEAFLEE-HPEFELVPL 406 (444)
T ss_pred CCCChhhhHHHHHHHHHh-CCCcEEecc
Confidence 22 233344555543 124665544
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.2e-10 Score=83.24 Aligned_cols=100 Identities=20% Similarity=0.245 Sum_probs=78.3
Q ss_pred eEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 125 KIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
+|+|+|||+|..+..++. .+.+++++|. +.++..++++...+.. .++.+...++.+... ...++||+|++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-----DNVEVLKGDAEELPP--EADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-----cceEEEEcChhhhcc--ccCCceEEEEEc
Confidence 589999999999888887 5568999999 7778888764443332 356676666544322 234689999999
Q ss_pred cccCC-CCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 203 DVIYS-EGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 203 d~iy~-~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
.+++. ......+++.+.++++++|.+++.
T Consensus 74 ~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 74 PPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99888 889999999999999999998876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=112.97 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=103.2
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCC-------
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHG------- 170 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~------- 170 (281)
+-|..|.+.|.... ...+++++|||||||+|.+++.+++.. ++|+++|+ +++++.+++|+..|++..
T Consensus 100 peTE~lve~L~~~~---~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~ 176 (1082)
T PLN02672 100 DWSFTFYEGLNRHP---DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYD 176 (1082)
T ss_pred hhHHHHHHHHHhcc---cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccc
Confidence 45677777764421 112467899999999999999999854 58999999 889999999999986430
Q ss_pred ----CCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC---------------C-----------------------
Q 023543 171 ----DLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS---------------E----------------------- 208 (281)
Q Consensus 171 ----~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~---------------~----------------------- 208 (281)
....++.+..-||.+.... .+.+||+||++-..-. +
T Consensus 177 ~~~~~l~~rV~f~~sDl~~~~~~--~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL 254 (1082)
T PLN02672 177 GEGKTLLDRVEFYESDLLGYCRD--NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGL 254 (1082)
T ss_pred cccccccccEEEEECchhhhccc--cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHH
Confidence 0123678888777543311 1136898888544210 0
Q ss_pred CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHH-HHHHHHhcCCeEEEEecC
Q 023543 209 GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLE-YFLEAAMKDFVIGRVEQT 259 (281)
Q Consensus 209 ~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~-~fl~~~~~~f~v~~i~~~ 259 (281)
..+..++....++|+|||.+++-...+...... ..+.. .+|....+.+.
T Consensus 255 ~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~--~gf~~~~~~~~ 304 (1082)
T PLN02672 255 GLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFER--RGFRITKLWQT 304 (1082)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHH--CCCCeeEEeee
Confidence 013677888888999999988877666655444 34433 57877666544
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=98.15 Aligned_cols=96 Identities=21% Similarity=0.251 Sum_probs=73.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..+..+++.+.+|+++|+ +.+++.++++...++.. .++.+...++. ..+.+||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~----~~i~~~~~d~~------~~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLA----GNITFEVGDLE------SLLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc----cCcEEEEcCch------hccCCcCEE
Confidence 46789999999999999999998999999999 88999999998776553 35666665532 124679999
Q ss_pred EEccccCC--CCcHHHHHHHHHHhhCCCc
Q 023543 200 LGSDVIYS--EGAVGDLLDTLLQLCGTQT 226 (281)
Q Consensus 200 ia~d~iy~--~~~~~~ll~~l~~ll~~~g 226 (281)
++.+++++ ......+++.+.+++++++
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 99999855 3456677777777664433
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-08 Score=96.20 Aligned_cols=138 Identities=20% Similarity=0.155 Sum_probs=90.1
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
.+|...+.++. ..+|.+|||+|||+|..++.++..+ .+|+++|+ +.+++.+++|++.++.. +.
T Consensus 231 ~~s~~~~~~l~--------~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~------~~ 296 (427)
T PRK10901 231 AAAQLAATLLA--------PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK------AT 296 (427)
T ss_pred HHHHHHHHHcC--------CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC------eE
Confidence 34555555553 2578899999999999999888754 48999999 88999999999998753 34
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCC---------------C-------CcHHHHHHHHHHhhCCCcEEEEEEe--
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYS---------------E-------GAVGDLLDTLLQLCGTQTTIFLAGE-- 233 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~---------------~-------~~~~~ll~~l~~ll~~~g~~~l~~~-- 233 (281)
+...|..+. .......+||.|++.-.... + .....++..+.++|+|||.++++.-
T Consensus 297 ~~~~D~~~~-~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 297 VIVGDARDP-AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EEEcCcccc-hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 455443221 11122457999985222111 0 1134789999999999999876652
Q ss_pred --eeChhHHHHHHHHHhcCCeEE
Q 023543 234 --LRNDSVLEYFLEAAMKDFVIG 254 (281)
Q Consensus 234 --~r~~~~~~~fl~~~~~~f~v~ 254 (281)
..+...++.|++. ..+|.+.
T Consensus 376 ~~~Ene~~v~~~l~~-~~~~~~~ 397 (427)
T PRK10901 376 LPEENEQQIKAFLAR-HPDAELL 397 (427)
T ss_pred ChhhCHHHHHHHHHh-CCCCEEe
Confidence 2344455556643 2356543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.8e-10 Score=95.11 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=78.8
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..++.+|||+|||||..+..+|++..+|+.+|. ++..+.|++|++..+.. ++.+..-|-....+ ...|||.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-----nV~v~~gDG~~G~~---~~aPyD~ 141 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-----NVTVRHGDGSKGWP---EEAPYDR 141 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-----ceEEEECCcccCCC---CCCCcCE
Confidence 457899999999999999999999889999999 88899999999999876 57777644211111 2379999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+..... +.+-+.+.+.|++||++++-..
T Consensus 142 I~Vtaaa------~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 142 IIVTAAA------PEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEeecc------CCCCHHHHHhcccCCEEEEEEc
Confidence 9986665 5556677778999999766544
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-11 Score=102.76 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=92.5
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
+++||||||||+.|..+-.+..+.+++|+ ..|++.+.+.=--..+-. ..-+. +.......+||+|.++
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~--Aea~~---------Fl~~~~~er~DLi~Aa 195 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYV--AEAVL---------FLEDLTQERFDLIVAA 195 (287)
T ss_pred ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHH--HHHHH---------HhhhccCCcccchhhh
Confidence 69999999999999999888889999999 678887764311100000 00000 1112345789999999
Q ss_pred cccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC-------------hhHHHHHHHHHh-cCCeEEEEecCCCCCCCCC
Q 023543 203 DVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN-------------DSVLEYFLEAAM-KDFVIGRVEQTQWHPDYCS 267 (281)
Q Consensus 203 d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~-------------~~~~~~fl~~~~-~~f~v~~i~~~~~~~~~~~ 267 (281)
||+-+...++.++-....+|+|||.+.++.+.-. .......-..+. .||.+..+++..++.+-..
T Consensus 196 DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~ 274 (287)
T COG4976 196 DVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGE 274 (287)
T ss_pred hHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCC
Confidence 9999999999999999999999999988865321 111111223333 4999999988776654443
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=93.31 Aligned_cols=119 Identities=15% Similarity=0.087 Sum_probs=81.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC---CEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-----CCcC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG---AQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-----QDLI 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-----~~~~ 192 (281)
.++.+|||||||+|..+..+++.. .+|+++|+..+ +.. .++.+...|+.+... ..+.
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~~-----~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DPI-----VGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cCC-----CCcEEEecCCCChHHHHHHHHHhC
Confidence 567899999999999998888753 47999999443 111 246677766554210 0134
Q ss_pred CCCCcEEEEccccCCCCc-----------HHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGA-----------VGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~-----------~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i 256 (281)
+.+||+|++.-..+.... +..+++.+.++|+|||.+++... +.. .+..|+..++..|.-..+
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~-~~~-~~~~~l~~l~~~f~~v~~ 187 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF-QGE-GFDEYLREIRSLFTKVKV 187 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe-cCc-CHHHHHHHHHhCceEEEE
Confidence 578999998654443211 25688999999999999888643 222 245678888888875554
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.7e-10 Score=95.01 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=81.1
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCC---EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGA---QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~---~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
++.+|||+|||+|..+..+++.+. +++++|+ +.+++.+++|.. .. .++.+...+..+. ....++||
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~----~~i~~~~~d~~~~---~~~~~~~D 108 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LP----LNIEFIQADAEAL---PFEDNSFD 108 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cC----CCceEEecchhcC---CCCCCcEE
Confidence 678999999999999888887544 7999999 788998888765 11 3456666554332 12346799
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+|+++..+++......+++.+.++|+|||.+++...
T Consensus 109 ~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999998888899999999999999999887654
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-10 Score=93.60 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=87.0
Q ss_pred CeEEEECCCcCHHHH-HHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE-EEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGC-IAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV-VTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i-~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~-~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
..|||+|||||..=- .--+.+..|+++|. +.|-+.+.+.+.+|... ++. +...+ ++... .+.+.++|.|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-----~~~~fvva~-ge~l~-~l~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-----QVERFVVAD-GENLP-QLADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-----ceEEEEeec-hhcCc-ccccCCeeeEE
Confidence 368999999994322 22235778999999 88999999999988432 444 33333 22222 35778999999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-hHHHHHHHHH
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND-SVLEYFLEAA 247 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-~~~~~fl~~~ 247 (281)
+.-++....+....++.+.++|+|||++++..+.+.+ +.+..+++..
T Consensus 151 ~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v 198 (252)
T KOG4300|consen 151 CTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQV 198 (252)
T ss_pred EEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHH
Confidence 9999999999999999999999999999988777654 3444444443
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4e-10 Score=109.85 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=79.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|..+..++. .+.+|+++|+ +.|++.++++...++. ++.+...|..+ .+..+.+.+||
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~------~ie~I~gDa~d-Lp~~fedeSFD 489 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR------SWNVIKGDAIN-LSSSFEKESVD 489 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------CeEEEEcchHh-CccccCCCCEE
Confidence 4688999999999998877776 3568999999 7889999988765432 34444433222 11124456899
Q ss_pred EEEEccccCC-------------CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYS-------------EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~-------------~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+|+++.++++ ......+++.+.+.|+|||.+++...
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999877653 23568899999999999999998864
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=6e-10 Score=107.05 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=79.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||||||+|..+..+++.+.+|+++|+ +.+++.+++ .++.. .++.+...+.... ...+++.+||+|
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~----~~i~~~~~d~~~~-~~~~~~~~fD~I 107 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHY----KNVKFMCADVTSP-DLNISDGSVDLI 107 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccC----CceEEEEeccccc-ccCCCCCCEEEE
Confidence 35779999999999999999998889999999 788865443 33221 3566777665321 222455789999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEE
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++..++++... ...+++.+.++|+|||.+++..
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 99999887544 6899999999999999988753
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=94.64 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=72.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHH----cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL----LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~----~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~ 193 (281)
.++.+|||||||+|.++..++. .| .+|+++|+ ++|++.++++...++. .+...+-+. .. ..+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--------~~~~~~~~~-l~--~~~ 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV--------TFRQAVSDE-LV--AEG 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC--------eEEEEeccc-cc--ccC
Confidence 3567999999999998887764 23 48999999 8999999887654432 233322111 11 235
Q ss_pred CCCcEEEEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 194 PLPDYVLGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
.+||+|+++.++++... ...+++.+.++++ |.+++....|.
T Consensus 128 ~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 128 ERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 68999999999988654 5678999999887 45555554444
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.3e-09 Score=90.43 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=103.1
Q ss_pred eEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cC-CEEEEEec-hhH
Q 023543 79 SLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LG-AQVILTDL-PDR 155 (281)
Q Consensus 79 ~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g-~~V~~tD~-~~~ 155 (281)
+++|.-.|+++-- =|+ +-.+.+++.+.+.+ ...+++..+||+|||+|.+++.++. ++ ..|+++|. +.+
T Consensus 114 ~l~l~~~pgVlIP-------RpE-TEE~V~~Vid~~~~-~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~A 184 (328)
T KOG2904|consen 114 DLDLVCKPGVLIP-------RPE-TEEWVEAVIDALNN-SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAA 184 (328)
T ss_pred CceEEecCCeeec-------Ccc-HHHHHHHHHHHHhh-hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHH
Confidence 4555555655321 155 45566666554322 2245677999999999999998876 33 46999999 778
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEEE----ecCCCCCCCcCCCCCcEEEEccccCCCC----------------------
Q 023543 156 LRLLKKNIENNLRHGDLRGSAVVTEL----TWGDDPDQDLIQPLPDYVLGSDVIYSEG---------------------- 209 (281)
Q Consensus 156 l~~~~~N~~~n~~~~~~~~~i~~~~l----~w~~~~~~~~~~~~fD~Iia~d~iy~~~---------------------- 209 (281)
+.++.+|+.++.+. +++.++.+ +|.+.. .+...++|+++++...-..+
T Consensus 185 i~La~eN~qr~~l~----g~i~v~~~~me~d~~~~~--~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~ 258 (328)
T KOG2904|consen 185 IKLAKENAQRLKLS----GRIEVIHNIMESDASDEH--PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGL 258 (328)
T ss_pred HHHHHHHHHHHhhc----CceEEEeccccccccccc--ccccCceeEEecCCCcccccchhhcCchheecCchhhhcccc
Confidence 99999999999987 67777755 333222 23456788888765432211
Q ss_pred ----cHHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhc
Q 023543 210 ----AVGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMK 249 (281)
Q Consensus 210 ----~~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~ 249 (281)
.+-.++.-..++|+|||.+.+.... +.+.....++.....
T Consensus 259 eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~ 304 (328)
T KOG2904|consen 259 EGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKD 304 (328)
T ss_pred chhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchh
Confidence 1455677778899999999988774 444444555555443
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-09 Score=92.34 Aligned_cols=120 Identities=14% Similarity=0.083 Sum_probs=90.2
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc--------CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL--------GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD 190 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~--------g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~ 190 (281)
...+.+|||++||||-++..+.+. +.+|+..|+ ++||..+++.+...++.. ..++.+... +..+.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~--~~~~~w~~~---dAE~Lp 172 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA--SSRVEWVEG---DAEDLP 172 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc--CCceEEEeC---CcccCC
Confidence 357799999999999888876652 257999999 999999999887766552 123455553 334445
Q ss_pred cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-hHHHHHH
Q 023543 191 LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND-SVLEYFL 244 (281)
Q Consensus 191 ~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-~~~~~fl 244 (281)
+++..||....+--|-+..+++..++...|.|||||++++-.-.+-. ..++.|.
T Consensus 173 Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy 227 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFY 227 (296)
T ss_pred CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHH
Confidence 67789999999999999999999999999999999998754433322 3444343
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.1e-10 Score=96.26 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=78.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC---cCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD---LIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~---~~~ 193 (281)
.++++|||+|||+|..++.++.. +.+|+++|+ +++++.+++|++.+++. .++.+...+..+..+.. ...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~----~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD----HKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEccHHHHHHHHHhCCCC
Confidence 57889999999999988777652 358999999 88999999999999876 56777776654322111 113
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++||+|+.- .- ...+..++..+.++++|||.+++-.
T Consensus 143 ~~fD~VfiD-a~--k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 143 PEFDFAFVD-AD--KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCCEEEEC-CC--HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 689998762 21 3456788999999999999887643
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.8e-09 Score=95.67 Aligned_cols=170 Identities=16% Similarity=0.117 Sum_probs=104.8
Q ss_pred ecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-
Q 023543 74 DACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL- 152 (281)
Q Consensus 74 ~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~- 152 (281)
.+.+..+++..+|++|+... +.....|.+++.+.++ ..+.+||||-||+|.+|+.+|..+.+|+|+|+
T Consensus 159 ~~~~~~~~~~~~~~sFfQvN------~~~~~~l~~~~~~~l~-----~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~ 227 (352)
T PF05958_consen 159 EIQDKGLSFRISPGSFFQVN------PEQNEKLYEQALEWLD-----LSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIV 227 (352)
T ss_dssp -ECCCTEEEEEETTS---SB------HHHHHHHHHHHHHHCT-----T-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-
T ss_pred eeeccceEEEECCCcCccCc------HHHHHHHHHHHHHHhh-----cCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCC
Confidence 34456688888888877655 4566777777766543 22338999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-------------CCcCCCCCcEEEEccccCCCCcHHHHHHHHH
Q 023543 153 PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-------------QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLL 219 (281)
Q Consensus 153 ~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-------------~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~ 219 (281)
+++++.|++|+..|++. ++.+...+-++... ..+....+|+||. |+.- ...-+.+++.+.
T Consensus 228 ~~av~~A~~Na~~N~i~-----n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vil-DPPR-~G~~~~~~~~~~ 300 (352)
T PF05958_consen 228 EEAVEDARENAKLNGID-----NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVIL-DPPR-AGLDEKVIELIK 300 (352)
T ss_dssp HHHHHHHHHHHHHTT-------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE----T-T-SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-----cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEE-cCCC-CCchHHHHHHHh
Confidence 89999999999999986 78887654322111 0112235787764 2211 112255666655
Q ss_pred HhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCCCCC
Q 023543 220 QLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCS 267 (281)
Q Consensus 220 ~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~ 267 (281)
+ ..-++|++|. +.++.+=+..+.++|++..+.--.+-|.-.+
T Consensus 301 ~---~~~ivYvSCn---P~tlaRDl~~L~~~y~~~~v~~~DmFP~T~H 342 (352)
T PF05958_consen 301 K---LKRIVYVSCN---PATLARDLKILKEGYKLEKVQPVDMFPQTHH 342 (352)
T ss_dssp H---SSEEEEEES----HHHHHHHHHHHHCCEEEEEEEEE-SSTTSS-
T ss_pred c---CCeEEEEECC---HHHHHHHHHHHhhcCEEEEEEEeecCCCCCc
Confidence 4 3567788775 3443333445567999998876555554443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=96.74 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=81.5
Q ss_pred CCCeEEEECCCcC-HHHHHHHH---cCCEEEEEec-hhHHHHHHHHHHH-hhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 122 HGKKIVELGSGCG-LVGCIAAL---LGAQVILTDL-PDRLRLLKKNIEN-NLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 122 ~~~~VLELGcGtG-~~~i~~a~---~g~~V~~tD~-~~~l~~~~~N~~~-n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.+++|+|+|||.| +.++.++. .+.+++++|+ +++++.|++++.. .++. .++.|...|..+... ...+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~----~rV~F~~~Da~~~~~---~l~~ 195 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS----KRMFFHTADVMDVTE---SLKE 195 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc----CCcEEEECchhhccc---ccCC
Confidence 7789999999965 55666653 3457999999 8999999999965 5554 578888876544211 1367
Q ss_pred CcEEEEccccCC-CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYS-EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~-~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
||+|.+.-++|+ ......+++.+.+.|+|||.+++..
T Consensus 196 FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 196 YDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999999966666 4889999999999999999988775
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.5e-10 Score=99.81 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=102.3
Q ss_pred ccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 118 MLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 118 ~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
...++++.|||+|||+|+++..+|+.|+ +|++++-++|.+.+++-++.|.+. +++.+.....++ .. ..++.
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~----~rItVI~GKiEd---ie-LPEk~ 244 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLA----DRITVIPGKIED---IE-LPEKV 244 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCcc----ceEEEccCcccc---cc-Cchhc
Confidence 3468999999999999999999999998 599999999999999999999765 678887744332 22 34789
Q ss_pred cEEEEc---cccCCCCcHHHHHHHHHHhhCCCcEEEEEEe--e-eChhHHHHHHHHHh----------cCCeEEEEecCC
Q 023543 197 DYVLGS---DVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE--L-RNDSVLEYFLEAAM----------KDFVIGRVEQTQ 260 (281)
Q Consensus 197 D~Iia~---d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~--~-r~~~~~~~fl~~~~----------~~f~v~~i~~~~ 260 (281)
|+||+- -.++++.+++..+.+- +.|+|+|.++=... . -......-|.+.+. .|-+...+....
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a 323 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSA 323 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhh
Confidence 999984 4466788888877765 89999998763321 1 11111111222221 233455555555
Q ss_pred CCCCCCCCcEEEEE
Q 023543 261 WHPDYCSPRVVVYI 274 (281)
Q Consensus 261 ~~~~~~~~~~~i~~ 274 (281)
..+.|+++-+..|.
T Consensus 324 ~~eYFrQPvVDtFD 337 (517)
T KOG1500|consen 324 HQEYFRQPVVDTFD 337 (517)
T ss_pred hhhhhccccccccc
Confidence 66677776555443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.8e-09 Score=99.04 Aligned_cols=140 Identities=19% Similarity=0.150 Sum_probs=92.7
Q ss_pred eecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCC
Q 023543 98 VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLR 173 (281)
Q Consensus 98 ~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~ 173 (281)
.+++.+..++-.+.. ..+|.+|||+|||+|..++.++.. +.+|+++|+ +.+++.+++|++.+++.
T Consensus 233 ~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~---- 301 (445)
T PRK14904 233 SVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT---- 301 (445)
T ss_pred EEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC----
Confidence 456544444444432 257889999999999888877753 458999999 88999999999998764
Q ss_pred CceEEEEEecCCCCCCCcCCCCCcEEEEc------cccC-------C--CC-------cHHHHHHHHHHhhCCCcEEEEE
Q 023543 174 GSAVVTELTWGDDPDQDLIQPLPDYVLGS------DVIY-------S--EG-------AVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 174 ~~i~~~~l~w~~~~~~~~~~~~fD~Iia~------d~iy-------~--~~-------~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++.+...|..+.. ...+||+|+.- .++. . +. ....++..+.++|+|||+++++
T Consensus 302 -~v~~~~~Da~~~~----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys 376 (445)
T PRK14904 302 -IIETIEGDARSFS----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA 376 (445)
T ss_pred -eEEEEeCcccccc----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5666665543221 23579999841 1111 1 01 1346899999999999998776
Q ss_pred Eeee----ChhHHHHHHHHHhcCCeEE
Q 023543 232 GELR----NDSVLEYFLEAAMKDFVIG 254 (281)
Q Consensus 232 ~~~r----~~~~~~~fl~~~~~~f~v~ 254 (281)
.-.- |....+.|++. ..+|.+.
T Consensus 377 tcs~~~~Ene~~v~~~l~~-~~~~~~~ 402 (445)
T PRK14904 377 TCSIEPEENELQIEAFLQR-HPEFSAE 402 (445)
T ss_pred eCCCChhhHHHHHHHHHHh-CCCCEEe
Confidence 5322 34456677753 2256543
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.7e-11 Score=103.61 Aligned_cols=137 Identities=26% Similarity=0.349 Sum_probs=95.2
Q ss_pred cCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHH-HHHHHHhhcCC-
Q 023543 95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLL-KKNIENNLRHG- 170 (281)
Q Consensus 95 tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~-~~N~~~n~~~~- 170 (281)
.|.++|.+|..|..++.... -....+.+|+|||||||+|+.++.+.+.| ..+.+.|+ .+.++.. --|+..|....
T Consensus 90 Gg~k~wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~ 168 (282)
T KOG2920|consen 90 GGLKLWECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGV 168 (282)
T ss_pred cceEEeecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhh
Confidence 38999999999999998653 12235789999999999999999999988 57999999 5666322 22333322110
Q ss_pred ---CCCCceEEEEE---ecCCCCCCCcCC-CCCcEEEEccccCCCCcHHHH-HHHHHHhhCCCcEEEEEEeeeC
Q 023543 171 ---DLRGSAVVTEL---TWGDDPDQDLIQ-PLPDYVLGSDVIYSEGAVGDL-LDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 171 ---~~~~~i~~~~l---~w~~~~~~~~~~-~~fD~Iia~d~iy~~~~~~~l-l~~l~~ll~~~g~~~l~~~~r~ 236 (281)
....-..+..- ||.- .... .+||+|+++.++|.+...+.+ ..+...++++.|+++++.+..+
T Consensus 169 ~~~e~~~~~~i~~s~l~dg~~----~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~y 238 (282)
T KOG2920|consen 169 EEKENHKVDEILNSLLSDGVF----NHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLY 238 (282)
T ss_pred hhhhcccceeccccccccchh----hhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHhhc
Confidence 00001111111 3311 1111 389999999999999999988 7777788899999998877654
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=89.09 Aligned_cols=143 Identities=15% Similarity=0.156 Sum_probs=96.1
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
+-..+.+||..+.......-...+|||||||.|.+-.-+++-|. +.+++|+ +.++++|+.-+++++.. +.|++
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~----n~I~f 122 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS----NEIRF 122 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC----cceeE
Confidence 34557788877533211112223999999999998888888775 4999999 78999988778888876 45999
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCC--------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc-
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYS--------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK- 249 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~--------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~- 249 (281)
+++|.-++ .+...+||+|+-..++=- ..-+...+..+.++|+|+|+++|..-....+. ..+.+..
T Consensus 123 ~q~DI~~~---~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dE---Lv~~f~~~ 196 (227)
T KOG1271|consen 123 QQLDITDP---DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDE---LVEEFENF 196 (227)
T ss_pred EEeeccCC---cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHH---HHHHHhcC
Confidence 99887543 345578898886433211 11124567788899999999887655443332 3344443
Q ss_pred CCeEE
Q 023543 250 DFVIG 254 (281)
Q Consensus 250 ~f~v~ 254 (281)
+|.+.
T Consensus 197 ~f~~~ 201 (227)
T KOG1271|consen 197 NFEYL 201 (227)
T ss_pred CeEEE
Confidence 46543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=97.01 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=85.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+|||+|||+|..++.++.. +.+|+++|+ +.+++.+++|+++.++. ++.+...|+.+.. ...+.+|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-----~v~~~~~Da~~l~--~~~~~~f 308 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-----SIEIKIADAERLT--EYVQDTF 308 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----eEEEEECchhhhh--hhhhccC
Confidence 56889999999999888877764 468999999 88999999999998764 4667665543211 1234679
Q ss_pred cEEEEccccCC-------C---------------CcHHHHHHHHHHhhCCCcEEEEEEeee----ChhHHHHHHHHHhcC
Q 023543 197 DYVLGSDVIYS-------E---------------GAVGDLLDTLLQLCGTQTTIFLAGELR----NDSVLEYFLEAAMKD 250 (281)
Q Consensus 197 D~Iia~d~iy~-------~---------------~~~~~ll~~l~~ll~~~g~~~l~~~~r----~~~~~~~fl~~~~~~ 250 (281)
|.|+.--.... + .....++..+.++|+|||.++++.-.- +...++.|++. ..+
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~-~~~ 387 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE-QKD 387 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh-CCC
Confidence 99986222111 1 123667888899999999876654332 34455556543 235
Q ss_pred CeEE
Q 023543 251 FVIG 254 (281)
Q Consensus 251 f~v~ 254 (281)
|.+.
T Consensus 388 ~~~~ 391 (431)
T PRK14903 388 AEVI 391 (431)
T ss_pred cEEe
Confidence 6543
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-08 Score=96.07 Aligned_cols=141 Identities=21% Similarity=0.158 Sum_probs=93.1
Q ss_pred ecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCc
Q 023543 99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGS 175 (281)
Q Consensus 99 ~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~ 175 (281)
.-.++..++.++. ..+|.+|||+|||+|..++.++.. +.+|+++|+ +++++.+++|++.++.. ..
T Consensus 223 Qd~~s~~~~~~L~--------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~----~~ 290 (426)
T TIGR00563 223 QDASAQWVATWLA--------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT----IK 290 (426)
T ss_pred ECHHHHHHHHHhC--------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC----eE
Confidence 3456777777664 246889999999999999888874 368999999 88999999999998764 12
Q ss_pred eEEEEEecCCCCCCCcCCCCCcEEEE------ccccCCCCc----------------HHHHHHHHHHhhCCCcEEEEEE-
Q 023543 176 AVVTELTWGDDPDQDLIQPLPDYVLG------SDVIYSEGA----------------VGDLLDTLLQLCGTQTTIFLAG- 232 (281)
Q Consensus 176 i~~~~l~w~~~~~~~~~~~~fD~Iia------~d~iy~~~~----------------~~~ll~~l~~ll~~~g~~~l~~- 232 (281)
+.+...+.... .......+||.|+. ..++...+. ...++..+.++|+|||.++++.
T Consensus 291 v~~~~~d~~~~-~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 291 AETKDGDGRGP-SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred EEEeccccccc-cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 22233221111 11113467999985 223322111 4678899999999999877653
Q ss_pred ee---eChhHHHHHHHHHhcCCeE
Q 023543 233 EL---RNDSVLEYFLEAAMKDFVI 253 (281)
Q Consensus 233 ~~---r~~~~~~~fl~~~~~~f~v 253 (281)
.. .+...++.|++.. .+|.+
T Consensus 370 s~~~~Ene~~v~~~l~~~-~~~~~ 392 (426)
T TIGR00563 370 SVLPEENSEQIKAFLQEH-PDFPF 392 (426)
T ss_pred CCChhhCHHHHHHHHHhC-CCCee
Confidence 33 3556667777643 24543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-09 Score=96.67 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=72.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..++.+++.. .+|+++|+ +++++.+++|+..++.. ++.+...|..... ....+|
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-----nV~~i~gD~~~~~---~~~~~f 150 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-----NVIFVCGDGYYGV---PEFAPY 150 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEeCChhhcc---cccCCc
Confidence 467899999999999999888743 36999999 88999999999988764 5666654432211 122579
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+.+..+ ..+...+.+.|+|||.+++..
T Consensus 151 D~Ii~~~g~------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 151 DVIFVTVGV------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cEEEECCch------HHhHHHHHHhcCCCCEEEEEe
Confidence 999986443 344556778899999977754
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=96.69 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=75.9
Q ss_pred CCCeEEEECCCcCH----HHHHHHHc-------CCEEEEEec-hhHHHHHHHHHHH----hhcC----------------
Q 023543 122 HGKKIVELGSGCGL----VGCIAALL-------GAQVILTDL-PDRLRLLKKNIEN----NLRH---------------- 169 (281)
Q Consensus 122 ~~~~VLELGcGtG~----~~i~~a~~-------g~~V~~tD~-~~~l~~~~~N~~~----n~~~---------------- 169 (281)
++.+|+|+|||||- +++.++.. +.+|+|||+ +.||+.|++++-. .++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34699999999995 56656543 357999999 8899999986421 1110
Q ss_pred --CCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 170 --GDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 170 --~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.....++.+...+..+ ......+||+|++..++++. .....+++.+.+.|+|||.+++...
T Consensus 179 v~~~ir~~V~F~~~dl~~---~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLA---ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCC---CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 0011345666655433 22235689999998887664 4567899999999999999988754
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=83.73 Aligned_cols=140 Identities=18% Similarity=0.227 Sum_probs=93.4
Q ss_pred CCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 123 GKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+-+||||||+|+++-.+++ .+ +.+.+||+ +.+++..++.++.|+.. +.+..-|... .+.+.+.|+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~------~~~V~tdl~~----~l~~~~VDv 113 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH------IDVVRTDLLS----GLRNESVDV 113 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc------cceeehhHHh----hhccCCccE
Confidence 56899999999999988886 34 35899999 99999999999999764 3333322211 112244554
Q ss_pred EEEccc--------c--------CC-----CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEE
Q 023543 199 VLGSDV--------I--------YS-----EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRV 256 (281)
Q Consensus 199 Iia~d~--------i--------y~-----~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i 256 (281)
++-+.. + |- .+..+.|+..+..+|.|.|.+|+....+|.. +..+..++ ++|.+...
T Consensus 114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP--KEILKILEKKGYGVRIA 191 (209)
T ss_pred EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH--HHHHHHHhhcccceeEE
Confidence 443222 1 00 1236889999999999999999988777653 22444444 58887776
Q ss_pred ecCCCCCCCCCCcEEEEEEEec
Q 023543 257 EQTQWHPDYCSPRVVVYILVKK 278 (281)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~~~k 278 (281)
..... ..+...|++++|.
T Consensus 192 ~~Rk~----~~E~l~ilkf~r~ 209 (209)
T KOG3191|consen 192 MQRKA----GGETLSILKFTRS 209 (209)
T ss_pred EEEec----CCceEEEEEEEeC
Confidence 54332 4566777777763
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.8e-09 Score=96.99 Aligned_cols=141 Identities=23% Similarity=0.147 Sum_probs=99.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-CcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~~~~~fD 197 (281)
.+|++||+|-|=||..|+.+|+.|| +||.+|. ..+++.+++|++.|++.. .++.+...|--+.... .-.+.+||
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~---~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDG---DRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCc---cceeeehhhHHHHHHHHHhcCCccc
Confidence 5699999999999999999999999 7999999 788999999999999872 3445555332111110 11235899
Q ss_pred EEEEccccCC---------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-----cCCeEEEEecCCCCC
Q 023543 198 YVLGSDVIYS---------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-----KDFVIGRVEQTQWHP 263 (281)
Q Consensus 198 ~Iia~d~iy~---------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-----~~f~v~~i~~~~~~~ 263 (281)
+|+.-.+-|- ..++..|+..+.++|+|||+++++...+.-.. +.|...+. .+..+..+......+
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~-~~f~~~i~~a~~~~~~~~~~~~~~~~~~ 371 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSS-DLFLEIIARAAAAAGRRAQEIEGEGQPP 371 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCH-HHHHHHHHHHHHhcCCcEEEeeccCCCC
Confidence 9997444443 34578899999999999999888766554332 23443332 256666665555555
Q ss_pred CC
Q 023543 264 DY 265 (281)
Q Consensus 264 ~~ 265 (281)
++
T Consensus 372 D~ 373 (393)
T COG1092 372 DH 373 (393)
T ss_pred Cc
Confidence 55
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=86.21 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=81.0
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcC---CEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-----CCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLG---AQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-----QDL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-----~~~ 191 (281)
..++++|||+|||+|.++..++... .+|+++|++.+. .. .++.+...+..+... ...
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-----~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-----ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-----CCceEEEeeCCChhHHHHHHHHh
Confidence 4578999999999999888777642 369999994432 11 235566656543210 012
Q ss_pred CCCCCcEEEEccccC-----CCC------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCC
Q 023543 192 IQPLPDYVLGSDVIY-----SEG------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQ 260 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy-----~~~------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~ 260 (281)
...+||+|++....+ ... ..+.+++.+.++|+|||.+++.....+ .+..++..++..|.-..+....
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~--~~~~~l~~l~~~~~~~~~~~~~ 172 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE--EIDEYLNELRKLFEKVKVTKPQ 172 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc--cHHHHHHHHHhhhceEEEeCCC
Confidence 345799999743221 111 236789999999999999888543222 2345677776677655554433
Q ss_pred CCCCCCC
Q 023543 261 WHPDYCS 267 (281)
Q Consensus 261 ~~~~~~~ 267 (281)
-.....+
T Consensus 173 ~~~~~~~ 179 (188)
T TIGR00438 173 ASRKRSA 179 (188)
T ss_pred CCCcccc
Confidence 3333333
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-09 Score=95.08 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=86.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++++|||||||+|.++..+++. +.+|+++|+ +++++.+++++..+... .++.+..-|..+.... ...+||+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~----~rv~v~~~Da~~~l~~--~~~~yD~ 139 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG----ERFEVIEADGAEYIAV--HRHSTDV 139 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC----CceEEEECCHHHHHHh--CCCCCCE
Confidence 5679999999999999887763 568999999 88999999987654332 4676666443221111 2357999
Q ss_pred EEEccccCCC---C--cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCe
Q 023543 199 VLGSDVIYSE---G--AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 199 Iia~d~iy~~---~--~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~ 252 (281)
|+. |..... . ....+++.+.++|+|+|++++-...+.. ....+++.+++.|.
T Consensus 140 I~~-D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~ 196 (262)
T PRK04457 140 ILV-DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE 196 (262)
T ss_pred EEE-eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence 986 332111 1 2379999999999999998875444443 34567777777785
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.2e-09 Score=85.63 Aligned_cols=77 Identities=21% Similarity=0.221 Sum_probs=57.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +.+++.+++|+..+ .++.+...|..+. .+.+.+||+|
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~-------~~v~ii~~D~~~~---~~~~~~~d~v 81 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA-------DNLTVIHGDALKF---DLPKLQPYKV 81 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC-------CCEEEEECchhcC---CccccCCCEE
Confidence 45679999999999999999988889999999 78999999887542 3566666554322 2233468988
Q ss_pred EEccccCCC
Q 023543 200 LGSDVIYSE 208 (281)
Q Consensus 200 ia~d~iy~~ 208 (281)
+++ +.|+.
T Consensus 82 i~n-~Py~~ 89 (169)
T smart00650 82 VGN-LPYNI 89 (169)
T ss_pred EEC-CCccc
Confidence 875 45553
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-08 Score=89.48 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=81.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+|||+|||+|..++.++.. ...|+++|+ +.+++.+++|++.++.. ++.+...|.... . ...++|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-----~v~~~~~D~~~~-~--~~~~~f 141 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-----NVAVTNFDGRVF-G--AAVPKF 141 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-----cEEEecCCHHHh-h--hhccCC
Confidence 46889999999999998887763 347999999 88999999999998764 566666553221 1 123469
Q ss_pred cEEEEccccCC-------C---------------CcHHHHHHHHHHhhCCCcEEEEEEeeeC----hhHHHHHHHH
Q 023543 197 DYVLGSDVIYS-------E---------------GAVGDLLDTLLQLCGTQTTIFLAGELRN----DSVLEYFLEA 246 (281)
Q Consensus 197 D~Iia~d~iy~-------~---------------~~~~~ll~~l~~ll~~~g~~~l~~~~r~----~~~~~~fl~~ 246 (281)
|+|+.--.... + .....+++...++|+|||+++.+.-.-+ ....+.|++.
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 99886222111 1 1234588888999999998776643322 3455556544
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-09 Score=97.96 Aligned_cols=106 Identities=15% Similarity=0.060 Sum_probs=81.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+..+||||||+|...+.+|+. ...++|+|+ +.++..+.+++..+++. ++.+...|..... ..+.+..+|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-----NV~~i~~DA~~ll-~~~~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-----NLLIINYDARLLL-ELLPSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHhh-hhCCCCceeE
Confidence 4569999999999999999985 457999999 88999999999988765 6887776653322 2345678999
Q ss_pred EEEccccCCCC------cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLGSDVIYSEG------AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia~d~iy~~~------~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|...-..-++. ..+.+++.+.++|+|||.+.+..-
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 98754433322 136899999999999999887654
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-08 Score=85.13 Aligned_cols=168 Identities=11% Similarity=0.041 Sum_probs=104.0
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCC----------
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHG---------- 170 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~---------- 170 (281)
....|.+|+.... ..++++||..|||.|.-.+.+|..|.+|+++|+ +.+++.+.+ +|+...
T Consensus 28 pnp~L~~~~~~l~-----~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~~~~ 99 (226)
T PRK13256 28 PNEFLVKHFSKLN-----INDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS---QNTINYEVIHGNDYKL 99 (226)
T ss_pred CCHHHHHHHHhcC-----CCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH---HcCCCcceecccccce
Confidence 4566777765421 135789999999999999999999999999999 778887644 221110
Q ss_pred CCCCceEEEEEecCCCCCCCcCCCCCcEEEEcccc--CCCCcHHHHHHHHHHhhCCCcEEEEEEee-eC----h---hHH
Q 023543 171 DLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVI--YSEGAVGDLLDTLLQLCGTQTTIFLAGEL-RN----D---SVL 240 (281)
Q Consensus 171 ~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~i--y~~~~~~~ll~~l~~ll~~~g~~~l~~~~-r~----~---~~~ 240 (281)
....++.+...|+-+.....-...+||+|.-.-++ ..++.....++.+.++|+|||.+++..-. .. + -..
T Consensus 100 ~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~ 179 (226)
T PRK13256 100 YKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQ 179 (226)
T ss_pred eccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCH
Confidence 01235666665554322111112579997765444 34777899999999999999976544321 11 0 012
Q ss_pred HHHHHHHhcCCeEEEEecC---CCCCCCCC-----CcEEEEEEEe
Q 023543 241 EYFLEAAMKDFVIGRVEQT---QWHPDYCS-----PRVVVYILVK 277 (281)
Q Consensus 241 ~~fl~~~~~~f~v~~i~~~---~~~~~~~~-----~~~~i~~~~~ 277 (281)
+.....+...|.++.+... ...+.+.. ..-.+|.+++
T Consensus 180 ~e~~~lf~~~~~i~~l~~~~~~~~~p~~~~~g~~~~~~~~~~l~~ 224 (226)
T PRK13256 180 AELIKNFSAKIKFELIDSKQRDNIPDYRKAEGMTEQYYTTYLRKK 224 (226)
T ss_pred HHHHHhccCCceEEEeeecccccCCcchhhcCcchhheeeEEEEe
Confidence 3334444567888888643 22222322 2345676665
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-09 Score=99.83 Aligned_cols=143 Identities=17% Similarity=0.112 Sum_probs=112.5
Q ss_pred ceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHH
Q 023543 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRL 156 (281)
Q Consensus 78 ~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l 156 (281)
..++++-||+.|+..++ .++.+|-.++.+++. ...++.+||+.||||.+|+++|+...+|+++++ ++++
T Consensus 349 ~~ltF~iSp~AFFQ~Nt------~~aevLys~i~e~~~----l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV 418 (534)
T KOG2187|consen 349 LGLTFRISPGAFFQTNT------SAAEVLYSTIGEWAG----LPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAV 418 (534)
T ss_pred CCeEEEECCchhhccCc------HHHHHHHHHHHHHhC----CCCCcEEEEEeecCCceehhhhccccceeeeecChhhc
Confidence 35788889999887776 457788888887654 345689999999999999999999899999999 9999
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC--CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 157 RLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ--PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 157 ~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~--~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+-|++|+..|++. ++.|....-++.++..+.+ +.-++|.-.|.-- ...+..+++.+..+-++.-.+|+++..
T Consensus 419 ~dA~~nA~~Ngis-----Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 419 EDAEKNAQINGIS-----NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNP 492 (534)
T ss_pred chhhhcchhcCcc-----ceeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCH
Confidence 9999999999987 7888886545554443332 1345555555542 566788999999998899999999876
Q ss_pred eC
Q 023543 235 RN 236 (281)
Q Consensus 235 r~ 236 (281)
+.
T Consensus 493 ~t 494 (534)
T KOG2187|consen 493 HT 494 (534)
T ss_pred HH
Confidence 64
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-09 Score=95.06 Aligned_cols=108 Identities=17% Similarity=0.120 Sum_probs=73.7
Q ss_pred CCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC---
Q 023543 122 HGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP--- 194 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~--- 194 (281)
++.+|||||||+|.....++.. +.+|+++|+ ++||+.+++++...... .++.....|..+..+ +..+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~----~~v~~i~gD~~~~~~--~~~~~~~ 136 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ----LEVHGICADFTQPLA--LPPEPAA 136 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC----ceEEEEEEcccchhh--hhccccc
Confidence 5689999999999988877764 578999999 88999999988764311 234444444332111 1111
Q ss_pred -CCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 195 -LPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 195 -~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
+..+++...++++ +.....+++.+++.|+|||.+++.....
T Consensus 137 ~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 137 GRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred CCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 2233333445665 4557789999999999999998876443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=92.13 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=71.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc-CC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL-GA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~-g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+|||+|||||..+..++.+ |. +|+++|. ++.++.+++|+...+.. ++.+..-|-.. ..-...+
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-----nv~~~~gdg~~---g~~~~ap 141 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-----NVEVVVGDGSE---GWPEEAP 141 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-----SEEEEES-GGG---TTGGG-S
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-----ceeEEEcchhh---ccccCCC
Confidence 457899999999999999888875 43 6999999 88899999999998875 67777755221 1113468
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
||.|+..-.. +.+-..+.+.|++||++++-..
T Consensus 142 fD~I~v~~a~------~~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 142 FDRIIVTAAV------PEIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEEESSBB------SS--HHHHHTEEEEEEEEEEES
T ss_pred cCEEEEeecc------chHHHHHHHhcCCCcEEEEEEc
Confidence 9999997766 2334556677899999876544
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.6e-10 Score=99.00 Aligned_cols=124 Identities=19% Similarity=0.091 Sum_probs=85.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|++||+|-|=||..|+.+++.|+ +|+.+|. ..+++.+++|+..|++. ..++.+...|.-+.....-...+||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~---~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD---LDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C---CTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHHHHhcCCCCCE
Confidence 5799999999999999999999998 6999999 77899999999999976 24677776553221111112468999
Q ss_pred EEEccccCC------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh
Q 023543 199 VLGSDVIYS------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM 248 (281)
Q Consensus 199 Iia~d~iy~------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~ 248 (281)
||.-.+-|. ..++..++..+.++++|||.++++.....-+ .+.|++.+.
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~-~~~l~~~~~ 253 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS-PDFLLEAVA 253 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS--HHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC-HHHHHHHHH
Confidence 997444433 2457889999999999999987665544332 233555444
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-08 Score=88.96 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=71.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+++|||+|||+|.+++.+++. +.+|+++|+ +.+++.+++|.. ++.+..-|.. +. .....||+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----------~v~~v~~D~~---e~-~~~~kFDl 129 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----------EAEWITSDVF---EF-ESNEKFDV 129 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----------CCEEEECchh---hh-cccCCCcE
Confidence 3569999999999999888774 468999999 889999988732 2333333321 11 12357999
Q ss_pred EEEccccCCCCc--------------------HHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGA--------------------VGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~--------------------~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|+++...++... +.+++.....+|+|+|.+++++..+
T Consensus 130 IIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 130 VISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred EEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 999888775211 3567777788899999988876553
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=86.22 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=90.5
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
+..-|||+|||+|+.|-.+...|..++++|+ +.||+.+.+.--+ + . +..-|-|.. ..+....||-+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e-g-------d--lil~DMG~G--lpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE-G-------D--LILCDMGEG--LPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh-c-------C--eeeeecCCC--CCCCCCccceEE
Confidence 5678999999999999999999988999999 8999998862111 1 1 223333432 234457899999
Q ss_pred EccccCCC-----------CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEE
Q 023543 201 GSDVIYSE-----------GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRV 256 (281)
Q Consensus 201 a~d~iy~~-----------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i 256 (281)
+-..+.+. .-+..|+.++..+|++++++++-+...++...+...+..+ .||.---+
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlv 185 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLV 185 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCcee
Confidence 85554431 1255678999999999999999998888888887877776 58864444
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-08 Score=88.98 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=92.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC---cCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD---LIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~---~~~ 193 (281)
.+.++|||+|+|+|..++.+|+. +.+|+.+|. ++.++.+++|++.+++. +++.+...+..+..+.. ..+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~----~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS----HKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHHHHHhcccC
Confidence 57889999999999999999872 457999999 88999999999999886 56777765433221110 013
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh------------hHHHHHHHHHhc--CCeEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND------------SVLEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~------------~~~~~fl~~~~~--~f~v~~i~ 257 (281)
.+||+|+.-. ....+...++.+.++|++||.+++-...... ..++.|.+.+.. .|....++
T Consensus 193 ~~FD~VFIDa---~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llP 267 (278)
T PLN02476 193 SSYDFAFVDA---DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVP 267 (278)
T ss_pred CCCCEEEECC---CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEE
Confidence 5899887532 2466788999999999999997765433221 125677777764 56665554
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-08 Score=91.92 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=100.7
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE 180 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~ 180 (281)
.+..|.++....++ ..++.+||||=||.|.+|+.+|+...+|+++|+ +++++.|++|++.|+.. ++.+..
T Consensus 277 ~~ekl~~~a~~~~~----~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-----N~~f~~ 347 (432)
T COG2265 277 VAEKLYETALEWLE----LAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-----NVEFIA 347 (432)
T ss_pred HHHHHHHHHHHHHh----hcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC-----cEEEEe
Confidence 35666777666543 245679999999999999999999999999999 89999999999999987 588887
Q ss_pred EecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 181 LTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 181 l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
.+-.+..........+|.|+.--.= ...-+.+++.+.++ +|..++|+++. +.++.+-+..+. .++.++++.-
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPPR--~G~~~~~lk~l~~~-~p~~IvYVSCN---P~TlaRDl~~L~~~gy~i~~v~~ 420 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPPR--AGADREVLKQLAKL-KPKRIVYVSCN---PATLARDLAILASTGYEIERVQP 420 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCCC--CCCCHHHHHHHHhc-CCCcEEEEeCC---HHHHHHHHHHHHhCCeEEEEEEE
Confidence 6543332222223467888752221 12235677777654 56677888764 666666666665 4777887753
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.4e-10 Score=92.86 Aligned_cols=110 Identities=22% Similarity=0.232 Sum_probs=79.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-CcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~~~~~fD 197 (281)
++|.+||||-||||.+|+.+..+|+ +|+++|. +.++..+++|++..+.. .++.+...|....... ...+.+||
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~----~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE----DKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G----GGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC----cceeeeccCHHHHHHhhcccCCCce
Confidence 7899999999999999999988887 6999999 88999999999988765 3466555432111110 01357899
Q ss_pred EEEEccccCCCCc-HHHHHHHHH--HhhCCCcEEEEEEeee
Q 023543 198 YVLGSDVIYSEGA-VGDLLDTLL--QLCGTQTTIFLAGELR 235 (281)
Q Consensus 198 ~Iia~d~iy~~~~-~~~ll~~l~--~ll~~~g~~~l~~~~r 235 (281)
+| -.|+.|.... +..++..+. .+|+++|.+++-+..+
T Consensus 117 iI-flDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 117 II-FLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EE-EE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EE-EECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 76 5778888887 499999988 5889999888777655
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-08 Score=90.11 Aligned_cols=129 Identities=8% Similarity=0.014 Sum_probs=84.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-C-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++++||+||||.|.++..+++. + .+|+++|+ +++++.+++++...........++.+..-|....... ...+||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccE
Confidence 5689999999999998887775 4 47999999 8899999998765322110124566666442211111 3468999
Q ss_pred EEEc--cccCCCC---cHHHHHHHHHHhhCCCcEEEEEEe--eeChhHHHHHHHHHhcCCeE
Q 023543 199 VLGS--DVIYSEG---AVGDLLDTLLQLCGTQTTIFLAGE--LRNDSVLEYFLEAAMKDFVI 253 (281)
Q Consensus 199 Iia~--d~iy~~~---~~~~ll~~l~~ll~~~g~~~l~~~--~r~~~~~~~fl~~~~~~f~v 253 (281)
|++. |.. .+. ....+++.++++|+|+|++++-.. ......+....+.+.+-|..
T Consensus 154 Ii~D~~dp~-~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~ 214 (283)
T PRK00811 154 IIVDSTDPV-GPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPI 214 (283)
T ss_pred EEECCCCCC-CchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCC
Confidence 9973 222 111 136788999999999999776432 22334455566666666653
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=90.41 Aligned_cols=93 Identities=10% Similarity=0.046 Sum_probs=66.4
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-----CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-----g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.+.+|||+|||+|..+..++.. +.+|+++|+ +.+++.++++. .++.+...+.. +..+.+.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~---~lp~~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSH---RLPFADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecc---cCCCcCCc
Confidence 4578999999999988877753 237999999 88998887652 13444554432 22345678
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
||+|++... + ..++.+.+.|+|||.++++...
T Consensus 152 fD~I~~~~~---~----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 152 LDAIIRIYA---P----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred eeEEEEecC---C----CCHHHHHhhccCCCEEEEEeCC
Confidence 999997543 2 3457789999999999887653
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=85.14 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=69.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|.+|||||||.|.+--.+.. ++.+..++|+ ++.+..+. .+| +.+.+.|..+... .+++.+||+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv----~rG--------v~Viq~Dld~gL~-~f~d~sFD~ 78 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV----ARG--------VSVIQGDLDEGLA-DFPDQSFDY 78 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH----HcC--------CCEEECCHHHhHh-hCCCCCccE
Confidence 4689999999999976555554 7888999999 55543332 233 3467766654432 367789999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
||.+.++......+.+++.+.+. |..++++.+.
T Consensus 79 VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 79 VILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred EehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecC
Confidence 99999998777777777766554 5566677653
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-08 Score=86.09 Aligned_cols=169 Identities=18% Similarity=0.099 Sum_probs=105.6
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHH-HHHHHhhcC-C-----CCC
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLK-KNIENNLRH-G-----DLR 173 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~-~N~~~n~~~-~-----~~~ 173 (281)
....|.+|+.+. ....+.+||..|||.|.-.+.+|..|.+|+|+|+ +.+++.+. +|....... . ...
T Consensus 22 ~~p~L~~~~~~l-----~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~ 96 (218)
T PF05724_consen 22 PNPALVEYLDSL-----ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQA 96 (218)
T ss_dssp STHHHHHHHHHH-----TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETT
T ss_pred CCHHHHHHHHhc-----CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecC
Confidence 377888888762 1245679999999999999999999999999999 77888763 222211111 0 012
Q ss_pred CceEEEEEecCCCCCCCcC-CCCCcEEEEccccC--CCCcHHHHHHHHHHhhCCCcEEEEE-Eeee-----Ch--h-HHH
Q 023543 174 GSAVVTELTWGDDPDQDLI-QPLPDYVLGSDVIY--SEGAVGDLLDTLLQLCGTQTTIFLA-GELR-----ND--S-VLE 241 (281)
Q Consensus 174 ~~i~~~~l~w~~~~~~~~~-~~~fD~Iia~d~iy--~~~~~~~ll~~l~~ll~~~g~~~l~-~~~r-----~~--~-~~~ 241 (281)
+++.+..-|. +...-. ..+||+|.-..++. .++..+..++.+.++|+|+|.+++. .... .+ . ..+
T Consensus 97 ~~i~~~~gDf---F~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ 173 (218)
T PF05724_consen 97 GRITIYCGDF---FELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEE 173 (218)
T ss_dssp SSEEEEES-T---TTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HH
T ss_pred CceEEEEccc---ccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHH
Confidence 3556666443 332111 14799999765554 4788999999999999999994433 2211 01 1 223
Q ss_pred HHHHHHhcCCeEEEEecCCCCC--------CCCCCcEEEEEEEec
Q 023543 242 YFLEAAMKDFVIGRVEQTQWHP--------DYCSPRVVVYILVKK 278 (281)
Q Consensus 242 ~fl~~~~~~f~v~~i~~~~~~~--------~~~~~~~~i~~~~~k 278 (281)
...+.+..+|++..+......+ ....-.-.+|.++||
T Consensus 174 ev~~l~~~~f~i~~l~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 218 (218)
T PF05724_consen 174 EVRELFGPGFEIEELEEEDSIEEEPRFKSWGLSRFREKVYVLRRK 218 (218)
T ss_dssp HHHHHHTTTEEEEEEEEEE-TTT-HHHHCCT-SS-EEEEEEEEE-
T ss_pred HHHHHhcCCcEEEEEecccccccccchhhcCcCceeEEEEEEEcC
Confidence 3445555799988886543221 223345678888876
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=94.89 Aligned_cols=99 Identities=24% Similarity=0.270 Sum_probs=75.1
Q ss_pred CCeEEEECCCcCHHHHHHHHc-CC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 123 GKKIVELGSGCGLVGCIAALL-GA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~-g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
+.+|||++||+|..|+.+++. ++ +|+++|+ +.+++.+++|++.|++. ++.+..-|....... ..+||+|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-----~~~v~~~Da~~~l~~---~~~fD~V 129 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-----NEKVFNKDANALLHE---ERKFDVV 129 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----ceEEEhhhHHHHHhh---cCCCCEE
Confidence 468999999999999999874 43 7999999 88999999999999875 344555443221110 3579998
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+. |.. ....+++....+.++++|.++++..
T Consensus 130 ~l-DP~---Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 130 DI-DPF---GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred EE-CCC---CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 87 653 4456788886677899999999843
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=92.53 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHh-hcCCCCCCceEEEEE-ecCCCCCCC-cCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENN-LRHGDLRGSAVVTEL-TWGDDPDQD-LIQPL 195 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n-~~~~~~~~~i~~~~l-~w~~~~~~~-~~~~~ 195 (281)
.+.+|||||||+|.+...++. .+.+++++|+ +.+++.|++|++.| ++. .++.+..- +-.+.+... .....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~----~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN----GAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc----CcEEEEEccchhhhhhcccccCCc
Confidence 457999999999977666554 4678999999 88999999999999 665 45665431 111111111 13468
Q ss_pred CcEEEEccccCCC
Q 023543 196 PDYVLGSDVIYSE 208 (281)
Q Consensus 196 fD~Iia~d~iy~~ 208 (281)
||+|+++-.+|..
T Consensus 190 fDlivcNPPf~~s 202 (321)
T PRK11727 190 FDATLCNPPFHAS 202 (321)
T ss_pred eEEEEeCCCCcCc
Confidence 9999999888764
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.4e-08 Score=84.92 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=93.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEE-EecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE-LTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~-l~w~~~~~~~~~~~~ 195 (281)
...++|||+|.+.|..++.+|.- ..+++.+|+ ++..+.|++|+++.+.. +++.... .++.+.... ..+++
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~----~~i~~~~~gdal~~l~~-~~~~~ 132 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD----DRIELLLGGDALDVLSR-LLDGS 132 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc----ceEEEEecCcHHHHHHh-ccCCC
Confidence 47899999999999999998872 347999999 89999999999999987 4566665 455443333 34689
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh----h--------H--HHHHHHHHhc--CCeEEEEe
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND----S--------V--LEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~----~--------~--~~~fl~~~~~--~f~v~~i~ 257 (281)
||+|..= ......+.+++.+.++|+|||.+++-.-..+. . . ...|.+.... +|+...++
T Consensus 133 fDliFID---adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP 207 (219)
T COG4122 133 FDLVFID---ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLP 207 (219)
T ss_pred ccEEEEe---CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEe
Confidence 9988751 12455688999999999999998765543331 1 1 4556666654 56665555
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=87.89 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=65.4
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-----CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-----g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.+.+|||+|||+|.+++.+++. ..+|+++|+ +.+++.+++|+.. +.+...|.. ... .+.+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~----------~~~~~~D~~---~~~-~~~~ 114 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE----------ATWINADAL---TTE-FDTL 114 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC----------CEEEEcchh---ccc-ccCC
Confidence 4779999999999999988863 347999999 8899999988532 233332321 111 2357
Q ss_pred CcEEEEccccCCC------------CcHHHHHHHHHHhhCCCcEE
Q 023543 196 PDYVLGSDVIYSE------------GAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 196 fD~Iia~d~iy~~------------~~~~~ll~~l~~ll~~~g~~ 228 (281)
||+||++-..+.. ..+..+++...+++++|+.+
T Consensus 115 FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I 159 (241)
T PHA03412 115 FDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI 159 (241)
T ss_pred ccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 8999987776631 22566888888877777753
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-08 Score=85.65 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=76.8
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.-.+|.|||||+|...-.+++ .++.++++|- ++|++.|+... .++.+...|..+. -+.++.|+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~w----~p~~~~dl 95 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRTW----KPEQPTDL 95 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhhc----CCCCccch
Confidence 456999999999998888887 4778999999 89998875432 2344544433222 13468899
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+.++.++++-.++..++..+...|.|||.+-+-.+
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence 99999999999999999999999999998766544
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.4e-08 Score=83.72 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=65.3
Q ss_pred CCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
++++|||+|||+|.++..++. .+.+++++|+ +++++.++.+ ++.+...+..+... .+.+.+||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~-~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLE-AFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhccc-ccCCCCcCEE
Confidence 567999999999998888765 4567999999 7787776531 13344444432111 1345689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGT 224 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~ 224 (281)
+++.++++..+...+++.+.+.+++
T Consensus 80 i~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 9999999988888888888776553
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.9e-08 Score=81.63 Aligned_cols=111 Identities=23% Similarity=0.243 Sum_probs=79.9
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+.|.++|||-||+|.+|+.++.+|+ +++++|. ..++..+++|++.-+.. .++.+..-|-.......-..++||
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~----~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE----GEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc----cceEEEeecHHHHHHhcCCCCccc
Confidence 37899999999999999999999988 5999999 78999999999988754 345555543221111111123699
Q ss_pred EEEEccccCCCCcHHHHHHHHH----HhhCCCcEEEEEEeee
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLL----QLCGTQTTIFLAGELR 235 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~----~ll~~~g~~~l~~~~r 235 (281)
+|. .|..|.....+.....+. ..|+|++.+++-....
T Consensus 117 lVf-lDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 117 LVF-LDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred EEE-eCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 655 788888777755555444 5689999987766544
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=86.99 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=93.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC---C
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI---Q 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~---~ 193 (281)
.+.++|||||||+|..++.+|.. +++|+.+|. ++..+.+++|++..+.. +++++...+..+..+.... .
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~----~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD----DRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG----GGEEEEES-HHHHHHHHHHTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC----CcEEEEEeccHhhHHHHHhccCC
Confidence 57789999999999999999972 579999999 88899999999999876 5788887554321111111 2
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC----------h--hHHHHHHHHHhc--CCeEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN----------D--SVLEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~----------~--~~~~~fl~~~~~--~f~v~~i~ 257 (281)
.+||+|..-. ....+...++.+.++|++||.+++-..... + ..++.|.+.+.. .|....++
T Consensus 120 ~~fD~VFiDa---~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llp 194 (205)
T PF01596_consen 120 GQFDFVFIDA---DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLP 194 (205)
T ss_dssp TSEEEEEEES---TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEEC
T ss_pred CceeEEEEcc---cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEE
Confidence 4799887532 356678888888999999998876643321 1 125567777764 56665554
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-08 Score=78.91 Aligned_cols=99 Identities=24% Similarity=0.212 Sum_probs=64.1
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCcCH-HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEe
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGL-VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELT 182 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGtG~-~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~ 182 (281)
.+++||.++.. ..++++|||+|||+|. ++..+++.|.+|+++|+ +.+++.++.+ + +.+..-|
T Consensus 3 ~i~~~l~~~~~----~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~--------~~~v~dD 66 (134)
T PRK04148 3 TIAEFIAENYE----KGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G--------LNAFVDD 66 (134)
T ss_pred HHHHHHHHhcc----cccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C--------CeEEECc
Confidence 36788877532 2356899999999996 89999999999999999 7777777654 2 2344433
Q ss_pred cCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcE
Q 023543 183 WGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTT 227 (281)
Q Consensus 183 w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~ 227 (281)
+. ++.+++--++|++|...-.+.+...+.++.+.-+.
T Consensus 67 lf--------~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 67 LF--------NPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINV 103 (134)
T ss_pred CC--------CCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 32 23333333445555543346666666666655443
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=81.20 Aligned_cols=113 Identities=17% Similarity=0.276 Sum_probs=76.5
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcC---CC----------------------
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRH---GD---------------------- 171 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~---~~---------------------- 171 (281)
.+.++.+||+||-+|.+++.+|+ .|++ |+++|+ +..+..|++|++.-.-. ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 57889999999999999999997 6765 999999 66789999987643111 00
Q ss_pred -----CCCceEEEEEec--C-CCCCCCcCCCCCcEEEEccccCC------CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 172 -----LRGSAVVTELTW--G-DDPDQDLIQPLPDYVLGSDVIYS------EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 172 -----~~~~i~~~~l~w--~-~~~~~~~~~~~fD~Iia~d~iy~------~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
...++.+..-.. . +++ ..+..+.||+|+|-.+.-+ .+-+..+++.+.++|.|||++++--+
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~df-l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDF-LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred cccccCCcchhcccccEEEecchh-hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 000010000000 0 000 0134578999999666433 45589999999999999999887754
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-07 Score=76.82 Aligned_cols=121 Identities=20% Similarity=0.166 Sum_probs=84.9
Q ss_pred CeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
.+++|+|+|.|.+|+.+|.. ..+|+++|- ..-+..++.-+..-++. ++.+...+.++ .....+||+|+
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-----nv~v~~~R~E~----~~~~~~fd~v~ 120 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-----NVEVINGRAEE----PEYRESFDVVT 120 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-----SEEEEES-HHH----TTTTT-EEEEE
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-----CEEEEEeeecc----cccCCCccEEE
Confidence 38999999999999998864 457999999 77788888777777775 68888866554 23457899999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEe
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
+-.+- .+..++..+..+++++|.+++--.....+.++..-..+. .+.....++
T Consensus 121 aRAv~----~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 121 ARAVA----PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp EESSS----SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEE
T ss_pred eehhc----CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeec
Confidence 97663 568899999999999998765543344444444444444 245555554
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-08 Score=79.51 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=57.1
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++|+.++|||||||.+++.++..+.+ |+|+|+ +++++..++|+++-.+. +.+.+.+.. +..+.+.-||
T Consensus 46 diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq------idlLqcdil---dle~~~g~fD 116 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ------IDLLQCDIL---DLELKGGIFD 116 (185)
T ss_pred cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh------hheeeeecc---chhccCCeEe
Confidence 589999999999999999999988886 999999 99999999999987765 334443332 2223345566
Q ss_pred EEEEccc
Q 023543 198 YVLGSDV 204 (281)
Q Consensus 198 ~Iia~d~ 204 (281)
.++-+..
T Consensus 117 taviNpp 123 (185)
T KOG3420|consen 117 TAVINPP 123 (185)
T ss_pred eEEecCC
Confidence 6555444
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-07 Score=82.80 Aligned_cols=139 Identities=19% Similarity=0.138 Sum_probs=97.8
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l 181 (281)
...||+.+.+.. ...+|..|||==||||-+.+.+...|++|+|+|+ ..|++-++.|++..++. ...+...
T Consensus 182 ~P~lAR~mVNLa----~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~-----~~~~~~~ 252 (347)
T COG1041 182 DPRLARAMVNLA----RVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIE-----DYPVLKV 252 (347)
T ss_pred CHHHHHHHHHHh----ccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcC-----ceeEEEe
Confidence 345666665432 2467889999999999999999999999999999 78999999999998754 2322222
Q ss_pred ecCCCCCCCcCCCCCcEEEEccccCCC----------CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCC
Q 023543 182 TWGDDPDQDLIQPLPDYVLGSDVIYSE----------GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDF 251 (281)
Q Consensus 182 ~w~~~~~~~~~~~~fD~Iia~d~iy~~----------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f 251 (281)
.+.....+.+..+|- |++|..|-. +.+..+++++.+.|++||.+.+..+.... -.....+|
T Consensus 253 --~Da~~lpl~~~~vda-IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~------~~~~~~~f 323 (347)
T COG1041 253 --LDATNLPLRDNSVDA-IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPR------HELEELGF 323 (347)
T ss_pred --cccccCCCCCCccce-EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcch------hhHhhcCc
Confidence 122222344456885 557777763 23788999999999999998888772221 12233588
Q ss_pred eEEEEecC
Q 023543 252 VIGRVEQT 259 (281)
Q Consensus 252 ~v~~i~~~ 259 (281)
++...-..
T Consensus 324 ~v~~~~~~ 331 (347)
T COG1041 324 KVLGRFTM 331 (347)
T ss_pred eEEEEEEE
Confidence 87776443
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-07 Score=82.99 Aligned_cols=129 Identities=12% Similarity=0.008 Sum_probs=80.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+++||+||||+|.++..+++.. .+|+++|+ +++++.+++++....... ...++.+..-|...... ....+||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~-~~~~v~i~~~D~~~~l~--~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSY-DDPRVDLQIDDGFKFLA--DTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccc-cCCceEEEECchHHHHH--hCCCCccE
Confidence 45699999999998887776654 47999999 788999999875532110 11345554422111000 11468999
Q ss_pred EEEccc--cCCCCc--HHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeE
Q 023543 199 VLGSDV--IYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVI 253 (281)
Q Consensus 199 Iia~d~--iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v 253 (281)
|+..-. ...... ...+++.++++|+|||++++.... .....+......+.+.|..
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~ 209 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPI 209 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCC
Confidence 997332 111112 467889999999999998775322 2234445555556665653
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.6e-07 Score=78.80 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=83.0
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+|||.|.|+|.++.++|. .| .+|+..|+ ++..+.|++|++..++. +++....-|. .+... ...
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~----d~v~~~~~Dv---~~~~~-~~~ 163 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG----DRVTLKLGDV---REGID-EED 163 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc----cceEEEeccc---ccccc-ccc
Confidence 46899999999999999999996 44 47999999 89999999999998765 3455555332 22222 238
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM 248 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~ 248 (281)
||.|+. +..+....++.+.++|+|||.+.+-.+.-++ .++-.+.++
T Consensus 164 vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ--v~kt~~~l~ 209 (256)
T COG2519 164 VDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ--VEKTVEALR 209 (256)
T ss_pred cCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH--HHHHHHHHH
Confidence 897663 3456788999999999999987666554333 233444444
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-07 Score=82.44 Aligned_cols=97 Identities=18% Similarity=0.182 Sum_probs=76.8
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..++|||||+|+|..++.+++ .+.+++..|.|++++.+++ . +++.+...|+.+ .+ |.+|++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~----~rv~~~~gd~f~----~~--P~~D~~ 162 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------A----DRVEFVPGDFFD----PL--PVADVY 162 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------T----TTEEEEES-TTT----CC--SSESEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------c----cccccccccHHh----hh--ccccce
Confidence 457999999999999988887 4568999999999988887 1 578888866542 22 239999
Q ss_pred EEccccCCC--CcHHHHHHHHHHhhCCC--cEEEEEEeee
Q 023543 200 LGSDVIYSE--GAVGDLLDTLLQLCGTQ--TTIFLAGELR 235 (281)
Q Consensus 200 ia~d~iy~~--~~~~~ll~~l~~ll~~~--g~~~l~~~~r 235 (281)
+.+.++|+. +....+++.+++.|+|| |+++|.....
T Consensus 163 ~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 163 LLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp EEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred eeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 999999884 55788999999999988 9999988764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-08 Score=85.67 Aligned_cols=112 Identities=22% Similarity=0.166 Sum_probs=72.3
Q ss_pred eecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHH-HHHHHHHhhcCCCCCC
Q 023543 98 VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRL-LKKNIENNLRHGDLRG 174 (281)
Q Consensus 98 ~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~-~~~N~~~n~~~~~~~~ 174 (281)
.+..++..|...+... ...+++++|||+|||||.++..+++.|+ +|+++|+ +.++.. ++.|..-.... ..
T Consensus 55 ~vsr~~~kL~~~l~~~----~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~---~~ 127 (228)
T TIGR00478 55 FVSRGGEKLKEALEEF----NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLE---RT 127 (228)
T ss_pred hhhhhHHHHHHHHHhc----CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEee---cC
Confidence 3466777788777753 2346899999999999999999999976 6999999 656543 44432211011 11
Q ss_pred ceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 023543 175 SAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 175 ~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l 230 (281)
+++ .++|.+.. ..+ ..+|+++.+-.. ++..+.++|++ |.+++
T Consensus 128 ni~--~~~~~~~~-~d~--~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 128 NIR--YVTPADIF-PDF--ATFDVSFISLIS--------ILPELDLLLNP-NDLTL 169 (228)
T ss_pred Ccc--cCCHhHcC-CCc--eeeeEEEeehHh--------HHHHHHHHhCc-CeEEE
Confidence 232 45565432 111 356777666443 67788888888 65443
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=89.69 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=70.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC------CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG------AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g------~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
+++.|||+|||+|.++..+++.+ .+|++++- +.+...+++.+..|+.. ++|.+..-+-.+. -...
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~----~~V~vi~~d~r~v----~lpe 257 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG----DKVTVIHGDMREV----ELPE 257 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT----TTEEEEES-TTTS----CHSS
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC----CeEEEEeCcccCC----CCCC
Confidence 57899999999999998877754 37999999 66777777777888775 5788888543322 1235
Q ss_pred CCcEEEEccc--cCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 195 LPDYVLGSDV--IYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 195 ~fD~Iia~d~--iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
++|+||+--+ +-..+..+..+....+.|+|+|+++
T Consensus 258 kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 258 KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 8999998222 2223466778899999999998754
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.3e-08 Score=82.94 Aligned_cols=96 Identities=23% Similarity=0.166 Sum_probs=69.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+|.+|||+.||.|..++.+|+ .+..|++.|+ |++++.+++|++.|++. +++.+...|..+... ...||
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~----~~i~~~~~D~~~~~~----~~~~d 171 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE----NRIEVINGDAREFLP----EGKFD 171 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T----TTEEEEES-GGG-------TT-EE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC----CeEEEEcCCHHHhcC----ccccC
Confidence 4688999999999999999998 6678999999 89999999999999887 578788876543222 56789
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
-|+...+- ....++..+..+++++|.+
T Consensus 172 rvim~lp~----~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 172 RVIMNLPE----SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEE--TS----SGGGGHHHHHHHEEEEEEE
T ss_pred EEEECChH----HHHHHHHHHHHHhcCCcEE
Confidence 88886543 2345777788888888865
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.4e-07 Score=77.32 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=85.9
Q ss_pred CCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC-CcE
Q 023543 123 GKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL-PDY 198 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~-fD~ 198 (281)
+++++|+|+|.|.+|+.+|. ...+|+.+|- ..-+..++.-..+-++. ++++..-..++.. ...+ ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-----nv~i~~~RaE~~~----~~~~~~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-----NVEIVHGRAEEFG----QEKKQYDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-----CeEEehhhHhhcc----cccccCcE
Confidence 68999999999999999885 3456999999 77788888777777665 6777765433211 1134 999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEecC
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQT 259 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~~ 259 (281)
|.+-.+ ..+..++..+..++++||.++........+.....-..+. .+|.+..+..-
T Consensus 139 vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 139 VTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred EEeehc----cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEe
Confidence 998655 3568899999999999998654333333333333433333 37777777543
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.3e-08 Score=83.26 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=80.6
Q ss_pred eEEEECCCcCHHHHHHHHc----CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CCCcCCCCCcE
Q 023543 125 KIVELGSGCGLVGCIAALL----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQDLIQPLPDY 198 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~----g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~~~~~~~fD~ 198 (281)
+|||+|||.|.....+.+- +-+|.+.|. +.++++.++|...+... +.....|...+. .......++|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~------~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESR------VEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhh------hcccceeccchhccCCCCcCccce
Confidence 7999999999776666552 247999999 89999999998776532 222222222211 22234467899
Q ss_pred EEEccccC--CCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHH
Q 023543 199 VLGSDVIY--SEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYF 243 (281)
Q Consensus 199 Iia~d~iy--~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~f 243 (281)
|++--++- .+...+..++.+.++|||||.+++.+..+++-...+|
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF 194 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF 194 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence 99866654 3677899999999999999999999877665443333
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.6e-07 Score=88.08 Aligned_cols=132 Identities=13% Similarity=0.001 Sum_probs=83.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCC--CCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHG--DLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~--~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
++++|||+|||+|.....+++.+ .+|+++|+ +++++.+++|...+.... -...++++..-|-.+... ....+|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~--~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR--KLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH--hCCCCC
Confidence 56899999999999988887764 48999999 889999998643222110 012456666544221111 123689
Q ss_pred cEEEEccccCCCC-----cHHHHHHHHHHhhCCCcEEEEEEe--eeChhHHHHHHHHHhc-CCeEEE
Q 023543 197 DYVLGSDVIYSEG-----AVGDLLDTLLQLCGTQTTIFLAGE--LRNDSVLEYFLEAAMK-DFVIGR 255 (281)
Q Consensus 197 D~Iia~d~iy~~~-----~~~~ll~~l~~ll~~~g~~~l~~~--~r~~~~~~~fl~~~~~-~f~v~~ 255 (281)
|+|++.-.-.... .-+.+++.++++|+|+|.+++... ....+.+....+.+++ +|.+..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~~ 441 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATTP 441 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEEE
Confidence 9999842211111 124688999999999999877542 2223444556666665 684443
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.2e-08 Score=83.81 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=66.4
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
+.++|+|||+|..++.+|..-.+|++||+ +.||+.+++--...-... ...... .+..+..-...+.|+|+++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t----~~~ms~---~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHT----PSTMSS---DEMVDLLGGEESVDLITAA 107 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccC----Cccccc---cccccccCCCcceeeehhh
Confidence 48999999999888888888678999999 789998875322211110 000110 0111111125789999999
Q ss_pred cccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 203 DVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 203 d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
.++|+ -+++.+.+.+.++|++.|-+
T Consensus 108 qa~HW-Fdle~fy~~~~rvLRk~Gg~ 132 (261)
T KOG3010|consen 108 QAVHW-FDLERFYKEAYRVLRKDGGL 132 (261)
T ss_pred hhHHh-hchHHHHHHHHHHcCCCCCE
Confidence 99865 56789999999999887733
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.4e-07 Score=81.47 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=78.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCc----C
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL----I 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~----~ 192 (281)
.+.++|||||+++|+.++.+|.. +.+|+.+|. ++..+.|++|++..++. +++.+...+..+..+... .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~----~~I~~~~G~a~e~L~~l~~~~~~ 153 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA----HKIDFREGPALPVLDQMIEDGKY 153 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC----CceEEEeccHHHHHHHHHhcccc
Confidence 56789999999999999988862 568999999 88899999999998876 578777755433221111 1
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
..+||+|..- . +...+...++.+.++|++||.+++-
T Consensus 154 ~~~fD~iFiD-a--dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 154 HGTFDFIFVD-A--DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CCcccEEEec-C--CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 2589988752 1 2555678888888999999997654
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=87.71 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=76.2
Q ss_pred CeEEEECCCcCHHHHHHHHc--CC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 124 KKIVELGSGCGLVGCIAALL--GA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~--g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
-+|||+.||+|..|+.+++. |+ +|+++|+ +++++.+++|++.|+.. ++.+...|....... ...+||+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-----~~~v~~~Da~~~l~~--~~~~fDvI 118 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-----NIEVPNEDAANVLRY--RNRKFHVI 118 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEchhHHHHHHH--hCCCCCEE
Confidence 58999999999999999986 54 6999999 89999999999999764 466666543322111 13579987
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.. |. |. ...+++..+.+.++++|.++++..
T Consensus 119 dl-DP-fG--s~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 119 DI-DP-FG--TPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred Ee-CC-CC--CcHHHHHHHHHhcccCCEEEEEec
Confidence 76 77 43 335788888889999999998854
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.5e-07 Score=76.92 Aligned_cols=107 Identities=17% Similarity=0.099 Sum_probs=77.6
Q ss_pred eEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----CcCCCCC
Q 023543 125 KIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-----DLIQPLP 196 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-----~~~~~~f 196 (281)
+|||||||||--+..+|.. .....-+|. +..+...+..+...+... -.....+|....... .....+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N----v~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN----VRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc----cCCCeEeecCCCCCccccccccCCCCc
Confidence 6999999999888888874 346889999 556677777777766541 111234443332111 1234689
Q ss_pred cEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 197 DYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 197 D~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|.|++..++|- .+..+.|++...++|++||.+++.++..
T Consensus 104 D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~ 144 (204)
T PF06080_consen 104 DAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFN 144 (204)
T ss_pred ceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcc
Confidence 99999999876 5678999999999999999998887654
|
The function of this family is unknown. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-06 Score=77.84 Aligned_cols=79 Identities=23% Similarity=0.226 Sum_probs=60.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +.+++.+++|+..++.. .++.+..-|+.+ . ..++||+|
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~----~~v~ii~~Dal~---~--~~~~~d~V 105 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLA----SKLEVIEGDALK---T--EFPYFDVC 105 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCC----CcEEEEECCHhh---h--cccccCEE
Confidence 46789999999999999999988889999999 88999999998876533 367777755432 1 12468988
Q ss_pred EEccccCCCC
Q 023543 200 LGSDVIYSEG 209 (281)
Q Consensus 200 ia~d~iy~~~ 209 (281)
+++ ..|+..
T Consensus 106 vaN-lPY~Is 114 (294)
T PTZ00338 106 VAN-VPYQIS 114 (294)
T ss_pred Eec-CCcccC
Confidence 865 555533
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=80.64 Aligned_cols=131 Identities=13% Similarity=0.041 Sum_probs=78.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHH---HhhcCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIE---NNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~---~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
...++||+||||+|.....+.+.. .+|+++|+ +++++.+++.-. .|.... ...++++..-|..+... ....
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~-~DpRV~vvi~Da~~fL~--~~~~ 225 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF-FDNRVNVHVCDAKEFLS--SPSS 225 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC-CCCceEEEECcHHHHHH--hcCC
Confidence 456799999999998777666644 47999999 889999996311 111110 12466665544322111 1246
Q ss_pred CCcEEEEccccCCC-------CcHHHHHHHHHHhhCCCcEEEEEEeee--ChhHHHHHHHHHhc-CCeEEEE
Q 023543 195 LPDYVLGSDVIYSE-------GAVGDLLDTLLQLCGTQTTIFLAGELR--NDSVLEYFLEAAMK-DFVIGRV 256 (281)
Q Consensus 195 ~fD~Iia~d~iy~~-------~~~~~ll~~l~~ll~~~g~~~l~~~~r--~~~~~~~fl~~~~~-~f~v~~i 256 (281)
+||+|+.- +. ++ -.-..+++.+++.|+|||++++-.... ....+..+...+.+ +|.+...
T Consensus 226 ~YDVIIvD-l~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 226 LYDVIIID-FP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred CccEEEEc-CC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 79999964 21 11 112678999999999999976543211 12233334555554 5554443
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=78.69 Aligned_cols=128 Identities=12% Similarity=0.009 Sum_probs=83.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+.++||+||||.|.+...+++.. .+|+++|+ +.+++.+++.....+... ...++++..-|-..... ...+.+||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~-~dpRv~vi~~Da~~~l~-~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGF-DDPRVNLHIGDGVEFLK-NAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcccc-CCCceEEEEChHHHHHh-hccCCCCC
Confidence 357899999999999888888753 47999999 778999999875432110 12466666644211111 11245799
Q ss_pred EEEEccccCC--CC---cHHHHHHHHHHhhCCCcEEEEEEe--eeChhHHHHHHHHHhcCC
Q 023543 198 YVLGSDVIYS--EG---AVGDLLDTLLQLCGTQTTIFLAGE--LRNDSVLEYFLEAAMKDF 251 (281)
Q Consensus 198 ~Iia~d~iy~--~~---~~~~ll~~l~~ll~~~g~~~l~~~--~r~~~~~~~fl~~~~~~f 251 (281)
+|+. |..-. +. .-..+++.++++|+|+|+++.-.. ......+....+.+.+.|
T Consensus 168 vIi~-D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 168 AIIV-DSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred EEEE-cCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 9997 32211 11 135789999999999999754221 233455666777777777
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-06 Score=77.09 Aligned_cols=107 Identities=20% Similarity=0.193 Sum_probs=81.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..|.+|||.-||.|.+++.+|+.|+. |+++|+ |.+++.+++|+..|+.. +.+.....|-.+.... -..+|-
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~----~~v~~i~gD~rev~~~---~~~aDr 259 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE----GRVEPILGDAREVAPE---LGVADR 259 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc----ceeeEEeccHHHhhhc---cccCCE
Confidence 46999999999999999999999886 999999 99999999999999987 4566666553322111 166899
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChh
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
|+..-+- ....++....++++++|.+.+....+...
T Consensus 260 Iim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 260 IIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred EEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 9876554 34667777778888888766555444433
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.9e-06 Score=75.45 Aligned_cols=122 Identities=19% Similarity=0.165 Sum_probs=86.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.+.+++||||+|.|-+...++..-.+|++|+. +.|.. .+...|.. .+...+|.+ .+.+||+|
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~----rL~~kg~~-------vl~~~~w~~------~~~~fDvI 155 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRW----RLSKKGFT-------VLDIDDWQQ------TDFKFDVI 155 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHH----HHHhCCCe-------EEehhhhhc------cCCceEEE
Confidence 46679999999999999999888888999999 55633 33333332 122334542 23579999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee--e-----------C------------hhHHHHHHHHHh-cCCeE
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL--R-----------N------------DSVLEYFLEAAM-KDFVI 253 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~--r-----------~------------~~~~~~fl~~~~-~~f~v 253 (281)
.|-.++=.-.....|++.+++.|+|+|+++++.-. + . .+....|.+.+. .||++
T Consensus 156 scLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v 235 (265)
T PF05219_consen 156 SCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEV 235 (265)
T ss_pred eehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 99888877788899999999999999998877321 0 1 122445665454 49999
Q ss_pred EEEecC
Q 023543 254 GRVEQT 259 (281)
Q Consensus 254 ~~i~~~ 259 (281)
.+..+-
T Consensus 236 ~~~tr~ 241 (265)
T PF05219_consen 236 ERWTRL 241 (265)
T ss_pred EEEecc
Confidence 888654
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.9e-07 Score=78.24 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=57.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..+++.+.+|+++|+ +.+++.+++++... .++.+...|..+. .-+.||.|
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~-------~~v~ii~~D~~~~-----~~~~~d~V 95 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA-------GNVEIIEGDALKV-----DLPEFNKV 95 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC-------CCEEEEEeccccC-----CchhceEE
Confidence 46789999999999999999998889999999 78899999887541 3577776554321 12457988
Q ss_pred EEccccC
Q 023543 200 LGSDVIY 206 (281)
Q Consensus 200 ia~d~iy 206 (281)
+++-+.+
T Consensus 96 v~NlPy~ 102 (258)
T PRK14896 96 VSNLPYQ 102 (258)
T ss_pred EEcCCcc
Confidence 8876644
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-06 Score=75.82 Aligned_cols=121 Identities=18% Similarity=0.198 Sum_probs=79.8
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCC-CCCCCcCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD-DPDQDLIQP 194 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~-~~~~~~~~~ 194 (281)
..+|.+|||-|.|+|.+++++++ .| .+|+-.|. ++..+.|++|++.+++. +++.+..-|... .++.. .+.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~----~~v~~~~~Dv~~~g~~~~-~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD----DNVTVHHRDVCEEGFDEE-LES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC----TTEEEEES-GGCG--STT--TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC----CCceeEecceeccccccc-ccC
Confidence 46899999999999999999997 33 48999999 88999999999999886 578888877642 22211 235
Q ss_pred CCcEEEEccccCCCCcHHHHHHHHHHhh-CCCcEEEEEEeeeChhHHHHHHHHHhc-CCe
Q 023543 195 LPDYVLGSDVIYSEGAVGDLLDTLLQLC-GTQTTIFLAGELRNDSVLEYFLEAAMK-DFV 252 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~~~~~ll~~l~~ll-~~~g~~~l~~~~r~~~~~~~fl~~~~~-~f~ 252 (281)
.+|.|+ -|+. .....+..+.+.| ++||.+.+-.+.-+ -.++..+.+++ +|.
T Consensus 113 ~~Davf-LDlp----~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--Qv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 113 DFDAVF-LDLP----DPWEAIPHAKRALKKPGGRICCFSPCIE--QVQKTVEALREHGFT 165 (247)
T ss_dssp SEEEEE-EESS----SGGGGHHHHHHHE-EEEEEEEEEESSHH--HHHHHHHHHHHTTEE
T ss_pred cccEEE-EeCC----CHHHHHHHHHHHHhcCCceEEEECCCHH--HHHHHHHHHHHCCCe
Confidence 688655 3333 3455667777788 78887654433222 23456666664 775
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.7e-07 Score=79.56 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=55.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +++++.+++|+.. .++.+...|+.+.. +.+-.++.|
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D~~~~~---~~~~~~~~v 109 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE--------DNLTIIEGDALKVD---LSELQPLKV 109 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc--------CceEEEEChhhcCC---HHHcCcceE
Confidence 46789999999999999999998889999999 8899999887642 25677776654321 111114777
Q ss_pred EEccccCCC
Q 023543 200 LGSDVIYSE 208 (281)
Q Consensus 200 ia~d~iy~~ 208 (281)
+++-. |+.
T Consensus 110 v~NlP-Y~i 117 (272)
T PRK00274 110 VANLP-YNI 117 (272)
T ss_pred EEeCC-ccc
Confidence 77644 543
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-06 Score=71.32 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=84.1
Q ss_pred ecchHHH--HHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCc
Q 023543 99 MWDSGVV--LGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGS 175 (281)
Q Consensus 99 ~W~~s~~--la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~ 175 (281)
-||.-.+ ..+||... .++..|-|+|||-+.++-.+ ..+.+|...|+ +. | ..
T Consensus 54 ~WP~nPvd~iI~~l~~~-------~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n-------~~ 107 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLKKR-------PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------N-------PR 107 (219)
T ss_dssp TSSS-HHHHHHHHHCTS--------TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S-------TT
T ss_pred cCCCCcHHHHHHHHHhc-------CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------C-------CC
Confidence 3776543 56666542 34569999999999777443 23456888888 32 1 12
Q ss_pred eEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc-CCeEE
Q 023543 176 AVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK-DFVIG 254 (281)
Q Consensus 176 i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~-~f~v~ 254 (281)
+. .- +....++.+...|++|.|-.+ +-..+..++....|.||++|.++|+...-.....+.|.+.+.. ||.+.
T Consensus 108 Vt--ac---dia~vPL~~~svDv~VfcLSL-MGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~ 181 (219)
T PF05148_consen 108 VT--AC---DIANVPLEDESVDVAVFCLSL-MGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLK 181 (219)
T ss_dssp EE--ES----TTS-S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEE
T ss_pred EE--Ee---cCccCcCCCCceeEEEEEhhh-hCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEE
Confidence 22 21 222334566789999988776 4466888999999999999999998765555556889988886 99887
Q ss_pred EEecCCCCCCCCCCcEEEEEEEecC
Q 023543 255 RVEQTQWHPDYCSPRVVVYILVKKL 279 (281)
Q Consensus 255 ~i~~~~~~~~~~~~~~~i~~~~~k~ 279 (281)
.-.. .+.-|.+|.++|..
T Consensus 182 ~~d~-------~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 182 SKDE-------SNKHFVLFEFKKIR 199 (219)
T ss_dssp EEE---------STTEEEEEEEE-S
T ss_pred eccc-------CCCeEEEEEEEEcC
Confidence 6532 45567788887754
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.8e-06 Score=70.98 Aligned_cols=103 Identities=20% Similarity=0.280 Sum_probs=70.0
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cCC---EEEEEec-hhHHHHHHHHHHHhhcCCC-----CCCceEEEEEecCCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LGA---QVILTDL-PDRLRLLKKNIENNLRHGD-----LRGSAVVTELTWGDDPDQ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g~---~V~~tD~-~~~l~~~~~N~~~n~~~~~-----~~~~i~~~~l~w~~~~~~ 189 (281)
..+|.+.||+|+|||.++.++++ .|+ .++++|. ++.++.+++|+...-.... ..++..+..-| -..-
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD---gr~g 156 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD---GRKG 156 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC---cccc
Confidence 57899999999999999888885 343 3599999 9999999999987642100 12334444322 1111
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
.-...|||-|-.... ...+.+.+...|+++|.+++-
T Consensus 157 ~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 157 YAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEe
Confidence 113478998876533 366777777788899887654
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=78.65 Aligned_cols=131 Identities=12% Similarity=0.044 Sum_probs=79.4
Q ss_pred ecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCC-CCc
Q 023543 99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDL-RGS 175 (281)
Q Consensus 99 ~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~-~~~ 175 (281)
-|=-+.++..|+..... ..++.+|||||||-|---.-.... -..++|+|+ ...|+.|++........... ..+
T Consensus 43 NwvKs~LI~~~~~~~~~----~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~ 118 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQ----NRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYR 118 (331)
T ss_dssp HHHHHHHHHHHCHCCCC----TTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSE
T ss_pred HHHHHHHHHHHHHhhhc----cCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccc
Confidence 37778888888654211 127789999999977433333333 357999999 77899998877432211000 011
Q ss_pred eEE-EEEecCCCCCC----CcCC--CCCcEEEEccccCC----CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 176 AVV-TELTWGDDPDQ----DLIQ--PLPDYVLGSDVIYS----EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 176 i~~-~~l~w~~~~~~----~~~~--~~fD~Iia~d~iy~----~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
..+ ..+-.++.+.. .+.. .+||+|-+--.+|+ +.....+++.+..+|+|||.++.+.+
T Consensus 119 ~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 119 FDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp ECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 111 11222333322 2233 48999988777766 45678899999999999999887766
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-06 Score=73.63 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=79.7
Q ss_pred CeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
..+||||||.|-.-+.+|+ ....++|+|+ ...+..+.+.+...++. ++.+...+........+.+.++|-|.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-----Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-----NVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-----SEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-----ceEEEEccHHHHHhhcccCCchheEE
Confidence 3899999999988887776 4567999999 78888888888888765 78888866433222222335666555
Q ss_pred E--ccccCCCC------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc---CCeEE
Q 023543 201 G--SDVIYSEG------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK---DFVIG 254 (281)
Q Consensus 201 a--~d~iy~~~------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~---~f~v~ 254 (281)
. .|.-.... ..+.+++.+.++|+|||.+.+..-. ..-.+..++.+.. +|...
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--EEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHHHHHSTTEEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHhcCcCeEEc
Confidence 4 44432221 2588999999999999998776442 2333334444444 45544
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-05 Score=75.00 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=86.2
Q ss_pred ecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCC
Q 023543 99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRG 174 (281)
Q Consensus 99 ~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~ 174 (281)
.-++|.+.+..|... ..+|.+|||++||.|-=+..+|. ++ ..|++.|+ +..++.+++|+++.++.
T Consensus 96 Qd~sS~l~~~~L~~~------~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~----- 164 (470)
T PRK11933 96 QEASSMLPVAALFAD------DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS----- 164 (470)
T ss_pred ECHHHHHHHHHhccC------CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----
Confidence 345555555555311 35788999999999977666665 32 47999999 78899999999998875
Q ss_pred ceEEEEEecCCCCCCCcCCCCCcEEEE----cc--ccCCC----------------CcHHHHHHHHHHhhCCCcEEEEE-
Q 023543 175 SAVVTELTWGDDPDQDLIQPLPDYVLG----SD--VIYSE----------------GAVGDLLDTLLQLCGTQTTIFLA- 231 (281)
Q Consensus 175 ~i~~~~l~w~~~~~~~~~~~~fD~Iia----~d--~iy~~----------------~~~~~ll~~l~~ll~~~g~~~l~- 231 (281)
++.+...|-.. ... .....||.|+. +. ++... .....++....++|+|||+++.+
T Consensus 165 nv~v~~~D~~~-~~~-~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 165 NVALTHFDGRV-FGA-ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred eEEEEeCchhh-hhh-hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 56655544211 111 12346999984 21 11111 11367888888999999986554
Q ss_pred Eee---eChhHHHHHHHH
Q 023543 232 GEL---RNDSVLEYFLEA 246 (281)
Q Consensus 232 ~~~---r~~~~~~~fl~~ 246 (281)
|.. -|..+++.|++.
T Consensus 243 CT~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 243 CTLNREENQAVCLWLKET 260 (470)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 332 234456666654
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-05 Score=68.68 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=45.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEec
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w 183 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +.+++.++.+.... .++.+...|.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~-------~~v~v~~~D~ 84 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLY-------ERLEVIEGDA 84 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcC-------CcEEEEECch
Confidence 46789999999999999999998889999999 78899888776431 3566666554
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.9e-06 Score=70.37 Aligned_cols=104 Identities=20% Similarity=0.257 Sum_probs=69.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCE-----------EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQ-----------VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD 188 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~-----------V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~ 188 (281)
.++..|||--||+|.+.+.++..+.. +++.|+ +++++.++.|++..+.. ..+.+...|..+..
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~----~~i~~~~~D~~~l~- 101 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE----DYIDFIQWDARELP- 101 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C----GGEEEEE--GGGGG-
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC----CceEEEecchhhcc-
Confidence 46789999999999999988875432 779999 88999999999988775 46777776554322
Q ss_pred CCcCCCCCcEEEEccccCCC---------CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 189 QDLIQPLPDYVLGSDVIYSE---------GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~~---------~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+.+..+|+||+. .-|.. ..+..+++.+.+.+++ ..+++...
T Consensus 102 --~~~~~~d~Ivtn-PPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~ 151 (179)
T PF01170_consen 102 --LPDGSVDAIVTN-PPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS 151 (179)
T ss_dssp --GTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES
T ss_pred --cccCCCCEEEEC-cchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC
Confidence 344678977754 44542 2356677778888888 44444444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-06 Score=71.10 Aligned_cols=114 Identities=18% Similarity=0.078 Sum_probs=70.4
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
+.|+|+.||.|-.++.+|+.+.+|+++|+ +..++.++.|++..++. +++.+..-||.+.......+..+|+|..+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~----~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVA----DNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-G----GGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 37999999999999999999999999999 88899999999999876 68999998886532221111127888874
Q ss_pred cc----------cCC------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHH
Q 023543 203 DV----------IYS------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEA 246 (281)
Q Consensus 203 d~----------iy~------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~ 246 (281)
.. .|+ +-....+++...++.+. ++.+-.|+.+. .++.+.
T Consensus 77 PPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~n----v~l~LPRn~dl-~ql~~~ 131 (163)
T PF09445_consen 77 PPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPN----VVLFLPRNSDL-NQLSQL 131 (163)
T ss_dssp --BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-----EEEEEETTB-H-HHHHHT
T ss_pred CCCCCccccccCccCHHHccCCCCHHHHHHHHHhhCCC----EEEEeCCCCCH-HHHHHH
Confidence 43 222 22466777776666432 23344566553 334433
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-06 Score=70.69 Aligned_cols=99 Identities=23% Similarity=0.293 Sum_probs=73.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.....+-|||+|+|++++.+|....+|++++. |...+++.+|+..++.. ++.+..-|. .+-.+ ...|+|
T Consensus 31 va~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~-----n~evv~gDA---~~y~f--e~ADvv 100 (252)
T COG4076 31 VAEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDV-----NWEVVVGDA---RDYDF--ENADVV 100 (252)
T ss_pred HhhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCc-----ceEEEeccc---ccccc--ccccee
Confidence 34578999999999999999998778999999 88899999999888775 677777442 22222 456888
Q ss_pred EE--ccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 200 LG--SDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 200 ia--~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
+| -|+..-.+..-+++..+-..|+..+.++
T Consensus 101 icEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 101 ICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 76 3444444555666777777887776653
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.6e-05 Score=67.17 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=84.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
.....|-|+|||-+-++. ..-.+|...|+-.+ | .++.+.. . ....+.+.+.|++|
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~----------~-------~~V~~cD--m---~~vPl~d~svDvaV 233 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SERHKVHSFDLVAV----------N-------ERVIACD--M---RNVPLEDESVDVAV 233 (325)
T ss_pred cCceEEEecccchhhhhh---ccccceeeeeeecC----------C-------Cceeecc--c---cCCcCccCcccEEE
Confidence 345689999999886554 22335888887322 1 1222222 1 12345678899999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc-CCeEEEEecCCCCCCCCCCcEEEEEEEecC
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK-DFVIGRVEQTQWHPDYCSPRVVVYILVKKL 279 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~-~f~v~~i~~~~~~~~~~~~~~~i~~~~~k~ 279 (281)
.|-.+ +-..+..++..+.++|++||.++|+...........|...+.. ||.+..... ...-|.+|.+.+-+
T Consensus 234 ~CLSL-Mgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~-------~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 234 FCLSL-MGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDV-------SNKYFTLFEFKKTP 305 (325)
T ss_pred eeHhh-hcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhh-------hcceEEEEEEecCC
Confidence 88766 3456788999999999999999999865444455668888875 999877643 34456667666543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.5e-06 Score=71.70 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=88.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|.+|||-+.|.|..++.+++.|+ +|+-++. +.+|++++.|=-..++. ...+++...|-.+ .-..+.+.+||+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~---~~~i~iilGD~~e-~V~~~~D~sfDa 208 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF---EIAIKIILGDAYE-VVKDFDDESFDA 208 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc---ccccEEecccHHH-HHhcCCccccce
Confidence 4799999999999999999999999 8999999 88999998775443333 1234444433211 112356788998
Q ss_pred EEEccccCCC---CcHHHHHHHHHHhhCCCcEEEEEE--e---eeChhHHHHHHHHHhc-CCe-EEEEe
Q 023543 199 VLGSDVIYSE---GAVGDLLDTLLQLCGTQTTIFLAG--E---LRNDSVLEYFLEAAMK-DFV-IGRVE 257 (281)
Q Consensus 199 Iia~d~iy~~---~~~~~ll~~l~~ll~~~g~~~l~~--~---~r~~~~~~~fl~~~~~-~f~-v~~i~ 257 (281)
||--..=+.. -.-+.|.+.+.++|+|||.++--. + .|.-+......+++.+ ||. +..+.
T Consensus 209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence 8853322221 123778899999999999875332 2 2333444555666765 998 55554
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-05 Score=64.72 Aligned_cols=84 Identities=8% Similarity=-0.101 Sum_probs=62.8
Q ss_pred EEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCc
Q 023543 148 ILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQT 226 (281)
Q Consensus 148 ~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g 226 (281)
+|+|+ ++|++.++++....... ...++.+...+.. +..+.+.+||+|+++.++++..+...+++.+.++|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~--~~~~i~~~~~d~~---~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS--CYKCIEWIEGDAI---DLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc--CCCceEEEEechh---hCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCe
Confidence 48999 88999998776532211 0135677665543 333456789999999999988899999999999999999
Q ss_pred EEEEEEeeeC
Q 023543 227 TIFLAGELRN 236 (281)
Q Consensus 227 ~~~l~~~~r~ 236 (281)
.+++......
T Consensus 76 ~l~i~d~~~~ 85 (160)
T PLN02232 76 RVSILDFNKS 85 (160)
T ss_pred EEEEEECCCC
Confidence 9988765443
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.4e-06 Score=73.07 Aligned_cols=114 Identities=14% Similarity=0.021 Sum_probs=71.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechh-HHHHHHHHHHHhhcCCC-CCCceEEEEEecCC-CCCC--CcCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPD-RLRLLKKNIENNLRHGD-LRGSAVVTELTWGD-DPDQ--DLIQP 194 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~-~l~~~~~N~~~n~~~~~-~~~~i~~~~l~w~~-~~~~--~~~~~ 194 (281)
.++..+++||||-|--.+-.-+.|. +++++|+.+ .++.+++..+....... ..=.+.+...|-.. .... ...++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 3677899999999855555555565 599999955 49998876554321100 00023333322110 0001 12345
Q ss_pred CCcEEEEccccCC----CCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 195 LPDYVLGSDVIYS----EGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 195 ~fD~Iia~d~iy~----~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+||+|-+--++|+ ......++..+.++|+|||.++-+.+.
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 6998887777765 456788999999999999998766553
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-05 Score=68.87 Aligned_cols=105 Identities=11% Similarity=-0.022 Sum_probs=75.0
Q ss_pred CeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
..+||||||.|-.-+.+|+..+ .++|+++ ...+..+.+.+.+.++. |+.+.+.|-....+...++.+.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-----Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-----NLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-----cEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 5899999999988888888665 4999999 77888888888887763 57777755433222222233566555
Q ss_pred E--ccccCCCCc------HHHHHHHHHHhhCCCcEEEEEEe
Q 023543 201 G--SDVIYSEGA------VGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 201 a--~d~iy~~~~------~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
. .|.-.-..+ .+.+++.+.+.|++||.+.++.-
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 4 444433222 58899999999999999988754
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.1e-05 Score=71.19 Aligned_cols=127 Identities=10% Similarity=0.086 Sum_probs=81.5
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-C-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
+.++||.||+|.|..+..+.+. + .+|+++|+ +++++.++++...+.... ...++++..-|-..... ....+||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~-~dprv~v~~~Da~~~L~--~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAF-CDKRLELIINDARAELE--KRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccc-cCCceEEEEChhHHHHh--hCCCCccE
Confidence 4679999999999888877664 3 47999999 889999999876543211 12456666543211111 12468999
Q ss_pred EEEccccCCC-----C---cHHHHHH-HHHHhhCCCcEEEEEEee----eChhHHHHHHHHHhcCCeE
Q 023543 199 VLGSDVIYSE-----G---AVGDLLD-TLLQLCGTQTTIFLAGEL----RNDSVLEYFLEAAMKDFVI 253 (281)
Q Consensus 199 Iia~d~iy~~-----~---~~~~ll~-~l~~ll~~~g~~~l~~~~----r~~~~~~~fl~~~~~~f~v 253 (281)
|+. |+. ++ . .-..+++ .++++|+|+|++++-... .....+...+..+.+.|..
T Consensus 180 Ii~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~ 245 (336)
T PLN02823 180 IIG-DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKY 245 (336)
T ss_pred EEe-cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCC
Confidence 985 331 11 1 1346777 889999999987654322 2234455566777777753
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-05 Score=70.11 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=49.2
Q ss_pred CCeEEEECCCcC-HHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHh-hcCCCCCCceEEEEEecCC-CCCCC-cCCCCC
Q 023543 123 GKKIVELGSGCG-LVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENN-LRHGDLRGSAVVTELTWGD-DPDQD-LIQPLP 196 (281)
Q Consensus 123 ~~~VLELGcGtG-~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n-~~~~~~~~~i~~~~l~w~~-~~~~~-~~~~~f 196 (281)
.-++||+|+|.- +..+..++ .|-+++|||+ +.+++.|++|++.| ++. ++|.+....=.+ .+... ..++.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~----~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE----SRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T----TTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc----cceEEEEcCCccccchhhhccccee
Confidence 458999999985 44666555 6789999999 88899999999999 776 678776643111 12111 124679
Q ss_pred cEEEEccccCCCC
Q 023543 197 DYVLGSDVIYSEG 209 (281)
Q Consensus 197 D~Iia~d~iy~~~ 209 (281)
|+.+|+..+|...
T Consensus 179 dftmCNPPFy~s~ 191 (299)
T PF05971_consen 179 DFTMCNPPFYSSQ 191 (299)
T ss_dssp EEEEE-----SS-
T ss_pred eEEecCCccccCh
Confidence 9999999998844
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0002 Score=62.15 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=91.3
Q ss_pred CceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCC
Q 023543 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDL 172 (281)
Q Consensus 96 G~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (281)
|..++++++.-+.|+.++. .+.|++||=||=+ =+.|+++|. +..+|+.+|+ +..++..++.++..++.
T Consensus 23 ~~~T~eT~~~Ra~~~~~~g-----dL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--- 93 (243)
T PF01861_consen 23 GYATPETTLRRAALMAERG-----DLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--- 93 (243)
T ss_dssp --B-HHHHHHHHHHHHHTT------STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----
T ss_pred ccccHHHHHHHHHHHHhcC-----cccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc---
Confidence 4566889999999998753 4789999999833 367777776 4558999999 67799999999999874
Q ss_pred CCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCc-EEEEEEeeeChh--HHHHHHHHHh-
Q 023543 173 RGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQT-TIFLAGELRNDS--VLEYFLEAAM- 248 (281)
Q Consensus 173 ~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g-~~~l~~~~r~~~--~~~~fl~~~~- 248 (281)
+++...|..+..+..+ ..+||+++ .|..|..+.+..++......|+..| ..+++...+... ....+.+.+.
T Consensus 94 ---i~~~~~DlR~~LP~~~-~~~fD~f~-TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~ 168 (243)
T PF01861_consen 94 ---IEAVHYDLRDPLPEEL-RGKFDVFF-TDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLE 168 (243)
T ss_dssp ---EEEE---TTS---TTT-SS-BSEEE-E---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHT
T ss_pred ---eEEEEecccccCCHHH-hcCCCEEE-eCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHH
Confidence 7888888776665543 36899654 8899999999999999888887655 778887776632 2122223333
Q ss_pred cCCeEEEEe
Q 023543 249 KDFVIGRVE 257 (281)
Q Consensus 249 ~~f~v~~i~ 257 (281)
.||-++.+-
T Consensus 169 ~gl~i~dii 177 (243)
T PF01861_consen 169 MGLVITDII 177 (243)
T ss_dssp S--EEEEEE
T ss_pred CCcCHHHHH
Confidence 388888774
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.3e-06 Score=73.63 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=71.8
Q ss_pred CeEEEECCCcC----HHHHHHHHc------CCEEEEEec-hhHHHHHHHHHHH----hhc--------------------
Q 023543 124 KKIVELGSGCG----LVGCIAALL------GAQVILTDL-PDRLRLLKKNIEN----NLR-------------------- 168 (281)
Q Consensus 124 ~~VLELGcGtG----~~~i~~a~~------g~~V~~tD~-~~~l~~~~~N~~~----n~~-------------------- 168 (281)
-+|.-.||.|| .+++.+... ..+|+|||+ +.+|+.|++.+-. .++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 59999999999 445555442 136999999 7889999865211 000
Q ss_pred --CCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 169 --HGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 169 --~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.......+.|...+..+... ....+||+|+|..++.+ .+....+++.+.+.|+|||.+++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~--~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQW--AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCC--ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 00112445566655433111 12368999999777644 5678999999999999999887775
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.5e-05 Score=68.22 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=85.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHH---------cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL---------LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD 190 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~---------~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~ 190 (281)
.++.+|+|-.||+|.+-+.+.. ...+++|.|+ +.++.+++.|+..++... ....+.. ++.+...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~---~~~~i~~---~d~l~~~ 118 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN---SNINIIQ---GDSLEND 118 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC---BGCEEEE---S-TTTSH
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc---ccccccc---ccccccc
Confidence 4677899999999977666654 3457999999 788999999988776541 1222333 3333222
Q ss_pred cC--CCCCcEEEEccccCCC---------------------CcHHHHHHHHHHhhCCCcEEEEEEeee---ChhHHHHHH
Q 023543 191 LI--QPLPDYVLGSDVIYSE---------------------GAVGDLLDTLLQLCGTQTTIFLAGELR---NDSVLEYFL 244 (281)
Q Consensus 191 ~~--~~~fD~Iia~d~iy~~---------------------~~~~~ll~~l~~ll~~~g~~~l~~~~r---~~~~~~~fl 244 (281)
.. +.+||+|+++-+.-.. ..--.++..+.+.|+++|++.+..+.. .......+.
T Consensus 119 ~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR 198 (311)
T PF02384_consen 119 KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIR 198 (311)
T ss_dssp SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHH
T ss_pred ccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHH
Confidence 21 4678988885443211 112347788889999999865555431 111223344
Q ss_pred HHHhcCCeEEEE---ecCCCCCCCCCCcEEEEEEEecC
Q 023543 245 EAAMKDFVIGRV---EQTQWHPDYCSPRVVVYILVKKL 279 (281)
Q Consensus 245 ~~~~~~f~v~~i---~~~~~~~~~~~~~~~i~~~~~k~ 279 (281)
+.+.+.+.++.+ +...+.+ ..-...|+.+.|+.
T Consensus 199 ~~ll~~~~i~aVI~Lp~~~F~~--t~v~t~ilil~k~~ 234 (311)
T PF02384_consen 199 KYLLENGYIEAVISLPSNLFKP--TGVPTSILILNKKK 234 (311)
T ss_dssp HHHHHHEEEEEEEE--TTSSSS--SSS-EEEEEEEESS
T ss_pred HHHHhhchhhEEeecccceecc--cCcCceEEEEeecc
Confidence 555555555555 3333222 23355566666654
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.4e-05 Score=66.05 Aligned_cols=129 Identities=13% Similarity=0.014 Sum_probs=79.7
Q ss_pred cCCCeEEEECCCcCHHHHHH-HHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIA-ALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~-a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
....++||.|||.|.++--+ ...-.+|.++|. +..++.|++.+...... ...+.+....+..+ ...+||+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~-----v~~~~~~gLQ~f~P---~~~~YDl 125 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPR-----VGEFYCVGLQDFTP---EEGKYDL 125 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCC-----EEEEEES-GGG-------TT-EEE
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCC-----cceEEecCHhhccC---CCCcEeE
Confidence 34579999999999998754 445557999999 88899888765552211 22333322221111 2358999
Q ss_pred EEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-------------hHHHHHHHHHh-cCCeEEEEe
Q 023543 199 VLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGELRND-------------SVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 199 Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-------------~~~~~fl~~~~-~~f~v~~i~ 257 (281)
|..-.|+-+ ..++-.+++.++..|+|+|.+++=...-.. ...+.|.+.+. .|+++..-.
T Consensus 126 IW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 126 IWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp EEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred EEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 999999877 456888999999999999998876433110 01344666665 488866654
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00051 Score=63.79 Aligned_cols=122 Identities=24% Similarity=0.272 Sum_probs=78.6
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc----CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~----g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
..+|.+|||+.++.|-=+..+|.+ |..|++.|. +..++.++.|+++.|.. ++.+...|-...........
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-----nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-----NVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-----ceEEEecccccccccccccC
Confidence 367899999999998444444432 455899999 77899999999999886 45555544221111111123
Q ss_pred CCcEEEE------cccc-------CCC---------CcHHHHHHHHHHhhCCCcEEEEEE-ee---eChhHHHHHHHH
Q 023543 195 LPDYVLG------SDVI-------YSE---------GAVGDLLDTLLQLCGTQTTIFLAG-EL---RNDSVLEYFLEA 246 (281)
Q Consensus 195 ~fD~Iia------~d~i-------y~~---------~~~~~ll~~l~~ll~~~g~~~l~~-~~---r~~~~~~~fl~~ 246 (281)
+||.|+. ..++ +.. .....++....+++||||.++.+. .. -|....+.|++.
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~ 306 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLER 306 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHh
Confidence 5998886 2222 211 125678889999999999876554 32 344566666644
|
|
| >KOG2497 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2e-06 Score=75.93 Aligned_cols=141 Identities=28% Similarity=0.219 Sum_probs=92.2
Q ss_pred CceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhH
Q 023543 77 GHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDR 155 (281)
Q Consensus 77 g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~ 155 (281)
.....+.|+.+.....+.||..+|++++.|..++.+..+ ...+.++.++|||.+...+.+++..--|...|- ..+
T Consensus 49 ~~~~v~~~~~~~~~~~~~tg~~~w~~al~L~~~l~~~~d----~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~ 124 (262)
T KOG2497|consen 49 PGTKVILQSHSLRFLLARTGLSVWESALSLEADLRDKPD----LSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCA 124 (262)
T ss_pred ccCeeeecchHHHHHHHHhccccchHHHHHHHHHhhCcc----cccccchHhhccCHHHHHHHHHhcccceecCCccCcH
Confidence 345667777776666788999999999999999987632 367899999999999888666665544555444 445
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhC
Q 023543 156 LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCG 223 (281)
Q Consensus 156 l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~ 223 (281)
.-+...+...+... .........++.|....... .....+|+|+++|++|. ....++++.+..+|.
T Consensus 125 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~ 191 (262)
T KOG2497|consen 125 GLLLEEIILLSRDL-SLEVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLL 191 (262)
T ss_pred HHHHHHHHhccccc-cccccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHH
Confidence 44444444433221 11112222333332211111 11223899999999999 888899998888663
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.2e-06 Score=70.12 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=67.0
Q ss_pred CCeEEEECCCcC----HHHHHHHH-----cC--CEEEEEec-hhHHHHHHHHHH-HhhcC-------------C------
Q 023543 123 GKKIVELGSGCG----LVGCIAAL-----LG--AQVILTDL-PDRLRLLKKNIE-NNLRH-------------G------ 170 (281)
Q Consensus 123 ~~~VLELGcGtG----~~~i~~a~-----~g--~~V~~tD~-~~~l~~~~~N~~-~n~~~-------------~------ 170 (281)
.-+|.-.||+|| .+++.+.. .+ .+|+|||+ +.+|+.|++-+= .+.+. .
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 348999999999 44555554 12 37999999 788998875210 01110 0
Q ss_pred ---CCCCceEEEEEecCCCCCCCcCCCCCcEEEEcccc-CC-CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 171 ---DLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVI-YS-EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 171 ---~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~i-y~-~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.....+.|...+.-+ ......+||+|+|-.|+ |. .+....+++.+.+.|+|||.+++...
T Consensus 112 v~~~lr~~V~F~~~NL~~---~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLD---PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp E-HHHHTTEEEEE--TT----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred EChHHcCceEEEecccCC---CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 013567888876554 11234689999998886 33 66789999999999999999988754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.7e-05 Score=61.82 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=81.6
Q ss_pred CcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC---EEEEEec-hhHHHHHHHHHHHhhcC
Q 023543 94 VTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA---QVILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 94 ~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~---~V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
+.|+. -|+|..+|+-+.+.++ ...|..|||+|.|||.+.-.+...|. .++++++ ++-...+.+...
T Consensus 25 tVGaI-~PsSs~lA~~M~s~I~----pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----- 94 (194)
T COG3963 25 TVGAI-LPSSSILARKMASVID----PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----- 94 (194)
T ss_pred eeeee-cCCcHHHHHHHHhccC----cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----
Confidence 34443 3666677777766433 35688999999999999988887775 4999999 787766654321
Q ss_pred CCCCCceEEEEEecCCCC--CCCcCCCCCcEEEEccccCCCCc--HHHHHHHHHHhhCCCcEEE-EEEe
Q 023543 170 GDLRGSAVVTELTWGDDP--DQDLIQPLPDYVLGSDVIYSEGA--VGDLLDTLLQLCGTQTTIF-LAGE 233 (281)
Q Consensus 170 ~~~~~~i~~~~l~w~~~~--~~~~~~~~fD~Iia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~-l~~~ 233 (281)
.+.+.+.|..+.. -.+...+.||.|+++-.+-+... --.+++.+...+..||.++ +.+.
T Consensus 95 -----~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 95 -----GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred -----CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 1222332211111 11234577999999988877443 4567888888888888755 4444
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.4e-05 Score=76.28 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=71.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC--------------------------------------------CEEEEEec-hhHH
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG--------------------------------------------AQVILTDL-PDRL 156 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g--------------------------------------------~~V~~tD~-~~~l 156 (281)
.+..++|-+||+|.+.|.+|..+ .+++|+|+ +.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46899999999999999887531 25999999 8999
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC----CCcHHHHHHHHHHhhC---CCcEEE
Q 023543 157 RLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS----EGAVGDLLDTLLQLCG---TQTTIF 229 (281)
Q Consensus 157 ~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~----~~~~~~ll~~l~~ll~---~~g~~~ 229 (281)
+.+++|+..+++. +.+.+...|+.+... .....+||+|+++-.... ......+.+.+.+.++ +|+.++
T Consensus 270 ~~A~~N~~~~g~~----~~i~~~~~D~~~~~~-~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 270 QAARKNARRAGVA----ELITFEVKDVADLKN-PLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred HHHHHHHHHcCCC----cceEEEeCChhhccc-ccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 9999999999886 457777766644221 112246898887644322 1234445444444443 666665
Q ss_pred EEE
Q 023543 230 LAG 232 (281)
Q Consensus 230 l~~ 232 (281)
+..
T Consensus 345 llt 347 (702)
T PRK11783 345 LFS 347 (702)
T ss_pred EEe
Confidence 543
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=67.84 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=76.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-----------------------------------------EEEEEec-hhHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-----------------------------------------QVILTDL-PDRLRL 158 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-----------------------------------------~V~~tD~-~~~l~~ 158 (281)
..+..++|-=||+|.+.|.+|.++. .+++.|+ +.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 4557999999999999999998774 3779999 899999
Q ss_pred HHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-----CC----cHHHHHHHHHHhhCCCcEEE
Q 023543 159 LKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS-----EG----AVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 159 ~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~-----~~----~~~~ll~~l~~ll~~~g~~~ 229 (281)
|+.|+++.++. +.|.+...|..+.... + ..+|+||++.+ |- .. .+..|.+++++.++.-+..+
T Consensus 270 Ak~NA~~AGv~----d~I~f~~~d~~~l~~~-~--~~~gvvI~NPP-YGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v 341 (381)
T COG0116 270 AKANARAAGVG----DLIEFKQADATDLKEP-L--EEYGVVISNPP-YGERLGSEALVAKLYREFGRTLKRLLAGWSRYV 341 (381)
T ss_pred HHHHHHhcCCC----ceEEEEEcchhhCCCC-C--CcCCEEEeCCC-cchhcCChhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 99999999987 6788888775432221 1 47888886544 33 11 35566667777777777766
Q ss_pred EEE
Q 023543 230 LAG 232 (281)
Q Consensus 230 l~~ 232 (281)
++.
T Consensus 342 ~tt 344 (381)
T COG0116 342 FTT 344 (381)
T ss_pred EEc
Confidence 653
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00042 Score=67.61 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC----------CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-C-C
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG----------AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-P-D 188 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g----------~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~-~ 188 (281)
.+.+|||.|||+|.+.+.++... .++++.|+ +.++..++.|+...+.. .+.+...+.-.. . .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~-----~~~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALL-----EINVINFNSLSYVLLN 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCC-----Cceeeecccccccccc
Confidence 45699999999998877776421 35899999 88899999998776411 122222111100 0 0
Q ss_pred CCcCCCCCcEEEEccccCCCC----------------------------------------------cHHHH-HHHHHHh
Q 023543 189 QDLIQPLPDYVLGSDVIYSEG----------------------------------------------AVGDL-LDTLLQL 221 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~~~----------------------------------------------~~~~l-l~~l~~l 221 (281)
..-..++||+||++.+.-... .+-.+ ++...++
T Consensus 106 ~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~l 185 (524)
T TIGR02987 106 IESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEI 185 (524)
T ss_pred cccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHh
Confidence 000125789999865543210 11113 3567788
Q ss_pred hCCCcEEEEEEeee--ChhHHHHHHHHHhcCCeEEEEecCCC-CCCCC--CCcEEEEEEEe
Q 023543 222 CGTQTTIFLAGELR--NDSVLEYFLEAAMKDFVIGRVEQTQW-HPDYC--SPRVVVYILVK 277 (281)
Q Consensus 222 l~~~g~~~l~~~~r--~~~~~~~fl~~~~~~f~v~~i~~~~~-~~~~~--~~~~~i~~~~~ 277 (281)
|+++|++.+..+.. .....+.|.+.+.+...+..+..-.. ...|. .....++.+.+
T Consensus 186 L~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~~f~~~~~lF~~v~~~~~i~~l~k 246 (524)
T TIGR02987 186 ANKNGYVSIISPASWLGDKTGENLREYIFNNRLINCIQYFQEEAKLFSGVNQATSIIHLNS 246 (524)
T ss_pred cCCCCEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEEECCccccCcCCCCcceEEEEEEC
Confidence 99999977665532 22233445566666777777644321 11232 22455665554
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00024 Score=63.04 Aligned_cols=120 Identities=9% Similarity=-0.101 Sum_probs=82.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.+.++||=+|.|-|...-.+.+...+|+++|+ +++++.+++-........ ...++.+.. |-. .....+||+|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~-~DpRv~l~~--~~~----~~~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVK-NNKNFTHAK--QLL----DLDIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhh-cCCCEEEee--hhh----hccCCcCCEE
Confidence 35689999999999988888887669999999 788999998433221111 124555543 211 1123579999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE--eeeChhHHHHHHHHHhcCCe
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG--ELRNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~--~~r~~~~~~~fl~~~~~~f~ 252 (281)
| .|..+. +.+.+.+++.|+|+|+++.-. +.-..+.+......+++.|.
T Consensus 144 I-vDs~~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~ 193 (262)
T PRK00536 144 I-CLQEPD----IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS 193 (262)
T ss_pred E-EcCCCC----hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence 8 565554 677889999999999876633 22234455666677777787
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.7e-05 Score=72.39 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=68.7
Q ss_pred eEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 125 KIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
.|||+|+|||++++.+++.|+. |++++. ..|.+.+++-...|+.. +++.+.+-.-.+ . ........|+++..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S----dkI~vInkrSte-v-~vg~~~RadI~v~e 142 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS----DKINVINKRSTE-V-KVGGSSRADIAVRE 142 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc----cceeeeccccce-e-eecCcchhhhhhHh
Confidence 7899999999999999998885 999999 99999999999999887 567666522100 0 00111235666655
Q ss_pred cccCC---CCcHHHHHHHHHHhhCCCcE
Q 023543 203 DVIYS---EGAVGDLLDTLLQLCGTQTT 227 (281)
Q Consensus 203 d~iy~---~~~~~~ll~~l~~ll~~~g~ 227 (281)
+..-. +..++.+=.+..+|++++..
T Consensus 143 ~fdtEligeGalps~qhAh~~L~~~nc~ 170 (636)
T KOG1501|consen 143 DFDTELIGEGALPSLQHAHDMLLVDNCK 170 (636)
T ss_pred hhhhhhhccccchhHHHHHHHhcccCCe
Confidence 44322 44567777777788887654
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.4e-05 Score=67.88 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=73.0
Q ss_pred CCeEEEECCCcC----HHHHHHHHcC-------CEEEEEec-hhHHHHHHHHHHH-----hhcCC---------------
Q 023543 123 GKKIVELGSGCG----LVGCIAALLG-------AQVILTDL-PDRLRLLKKNIEN-----NLRHG--------------- 170 (281)
Q Consensus 123 ~~~VLELGcGtG----~~~i~~a~~g-------~~V~~tD~-~~~l~~~~~N~~~-----n~~~~--------------- 170 (281)
.-+|.-.||+|| .+++++...+ .+|+|||+ ..+|+.|+.-+=. -++..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 458999999999 4555555422 36999999 7789988742211 11110
Q ss_pred ----CCCCceEEEEEecCCCCCCCcCCCCCcEEEEcccc-CC-CCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 171 ----DLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVI-YS-EGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 171 ----~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~i-y~-~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
.....|.|..++.. .......+||+|+|-+|+ |. ......+++.++..|+|||.+++.....
T Consensus 177 ~v~~~ir~~V~F~~~NLl---~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 177 RVKEELRKMVRFRRHNLL---DDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred EEChHHhcccEEeecCCC---CCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 01234455554432 222234679999998875 44 6778899999999999999999886543
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0002 Score=61.31 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=73.9
Q ss_pred EEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 126 IVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 126 VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
|.|+||--|.+++.+.+.|. +++++|+ +.-++.|+.|+..+++. +++.+...| .+...-+.+..|.|+-+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~----~~i~~rlgd---GL~~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE----DRIEVRLGD---GLEVLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T----TTEEEEE-S---GGGG--GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc----ccEEEEECC---cccccCCCCCCCEEEEe
Confidence 68999999999999999886 6999999 77899999999999876 577777743 22221122337888876
Q ss_pred cccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEE
Q 023543 203 DVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGR 255 (281)
Q Consensus 203 d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~ 255 (281)
.+= -..+..++......++.... ++-++..+...+++|+. ..||.+..
T Consensus 74 GMG--G~lI~~ILe~~~~~~~~~~~-lILqP~~~~~~LR~~L~--~~gf~I~~ 121 (205)
T PF04816_consen 74 GMG--GELIIEILEAGPEKLSSAKR-LILQPNTHAYELRRWLY--ENGFEIID 121 (205)
T ss_dssp EE---HHHHHHHHHHTGGGGTT--E-EEEEESS-HHHHHHHHH--HTTEEEEE
T ss_pred cCC--HHHHHHHHHhhHHHhccCCe-EEEeCCCChHHHHHHHH--HCCCEEEE
Confidence 663 11234444444444444444 45566677777777773 35787543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.7e-05 Score=60.81 Aligned_cols=56 Identities=27% Similarity=0.390 Sum_probs=47.2
Q ss_pred eEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCC
Q 023543 125 KIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~ 185 (281)
+|||+|||.|..++.+++.+. +|+++|. +.+.+.+++|+..|+.. ++.+.+..+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-----~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-----NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-----cEEEEEeeeeC
Confidence 489999999999999998765 5999999 89999999999999764 46666666554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00019 Score=63.89 Aligned_cols=112 Identities=15% Similarity=0.086 Sum_probs=82.8
Q ss_pred CCeEEEECCCcCHHHHHHHH--cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 123 GKKIVELGSGCGLVGCIAAL--LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~--~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.-+|||+.||.|.-=+-+.. .. .+|.+.|+ +..++..++-++.+++. +.+++.+.|-.+.....-..+.++
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~----~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE----DIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc----cceEEEecCCCCHhHhhccCCCCC
Confidence 34999999999965443322 22 36999999 77899999999999987 455888866544333333457789
Q ss_pred EEEEccccCCC---CcHHHHHHHHHHhhCCCcEEEEEEeeeChh
Q 023543 198 YVLGSDVIYSE---GAVGDLLDTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 198 ~Iia~d~iy~~---~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
++|.+.++-.- ..+...++-+..++.|||.++.+.+..++.
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 99998886443 336778888999999999998888776654
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=57.25 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=54.6
Q ss_pred cccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 119 LLLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 119 ~~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..+++++|+|+|+++|-.+|.++..||+ |++.+. +...+..++|++.|.+- ++. +..-.|.. .-++|
T Consensus 25 idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~----DK~-v~~~eW~~------~Y~~~ 93 (156)
T PHA01634 25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNIC----DKA-VMKGEWNG------EYEDV 93 (156)
T ss_pred eeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheee----ece-eecccccc------cCCCc
Confidence 4589999999999999999999999996 999999 77788999999988543 122 22335653 12678
Q ss_pred cEEE
Q 023543 197 DYVL 200 (281)
Q Consensus 197 D~Ii 200 (281)
|+.+
T Consensus 94 Di~~ 97 (156)
T PHA01634 94 DIFV 97 (156)
T ss_pred ceEE
Confidence 8654
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00076 Score=57.71 Aligned_cols=135 Identities=18% Similarity=0.084 Sum_probs=83.1
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
-+++.+|.+||.............-++||+||=+....+. ..+ .+|+.+|+ +.- ..
T Consensus 29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~--------------------~~ 86 (219)
T PF11968_consen 29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQH--------------------PG 86 (219)
T ss_pred CchhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCCC--------------------CC
Confidence 4789999999987532111111235999999875533322 222 35999999 421 11
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCCC---CcHHHHHHHHHHhhCCCcE-----EEEEEee------eChhHHHHH
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYSE---GAVGDLLDTLLQLCGTQTT-----IFLAGEL------RNDSVLEYF 243 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~---~~~~~ll~~l~~ll~~~g~-----~~l~~~~------r~~~~~~~f 243 (281)
+.+-|+-+.+-+....+.||+|.++-|+-.. ..--.+++.+.++|+++|. ++++-+. |+- +.+.|
T Consensus 87 I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~-~~~~l 165 (219)
T PF11968_consen 87 ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYM-TEERL 165 (219)
T ss_pred ceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccccc-CHHHH
Confidence 2333443332222245789999999998663 3456789999999999999 8877653 332 23445
Q ss_pred HHHHhc-CCeEEEEe
Q 023543 244 LEAAMK-DFVIGRVE 257 (281)
Q Consensus 244 l~~~~~-~f~v~~i~ 257 (281)
...+.. ||...+-.
T Consensus 166 ~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 166 REIMESLGFTRVKYK 180 (219)
T ss_pred HHHHHhCCcEEEEEE
Confidence 555543 88765543
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00071 Score=59.63 Aligned_cols=142 Identities=12% Similarity=0.061 Sum_probs=88.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC-CCc
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP-LPD 197 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~-~fD 197 (281)
+.++||=||-|.|...-.+.+.. .+|+++|+ +.+++.+++-....... -...++++..-|-...... ... +||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~--~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKE--TQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHT--SSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHh--ccCCccc
Confidence 67899999999998877777754 57999999 88899999876554321 0124666655331110011 123 899
Q ss_pred EEEE--ccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeEEEEecCCCCCCCCC
Q 023543 198 YVLG--SDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCS 267 (281)
Q Consensus 198 ~Iia--~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~ 267 (281)
+|+. .|...... .-..+++.++++|+|+|++++-... .....+......++..|.. .-.....-|.|..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~-v~~~~~~vP~~~~ 227 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQ-VKPYTAYVPSYGS 227 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSE-EEEEEEECTTSCS
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCc-eEEEEEEcCeecc
Confidence 9986 33221111 1378999999999999997765432 3345556666777777762 2223344566655
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0021 Score=54.76 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=83.1
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc-CC--EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----Cc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL-GA--QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-----DL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~-g~--~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-----~~ 191 (281)
..++.+|+||||-.|-.+-.+++. ++ +|+++|+..+- ....+.+.+.|..+.... .+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccCccHHHHHHHHc
Confidence 446789999999999999988874 33 39999994440 112466666665543221 23
Q ss_pred CCCCCcEEEEccccCC------------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecC
Q 023543 192 IQPLPDYVLGSDVIYS------------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQT 259 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~------------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~ 259 (281)
.+.++|+|++ |.--+ .......+......|+++|.+++-.- +... .+.++..+++.|+.-.+...
T Consensus 108 ~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f-qg~~-~~~~l~~~~~~F~~v~~~KP 184 (205)
T COG0293 108 GGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF-QGED-FEDLLKALRRLFRKVKIFKP 184 (205)
T ss_pred CCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE-eCCC-HHHHHHHHHHhhceeEEecC
Confidence 4456798874 22211 12234455566668899998765543 3332 35688888888875555321
Q ss_pred CCCCCCCCCcEEEEEEEec
Q 023543 260 QWHPDYCSPRVVVYILVKK 278 (281)
Q Consensus 260 ~~~~~~~~~~~~i~~~~~k 278 (281)
+..+.....+|.+-+.
T Consensus 185 ---~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 185 ---KASRKRSREIYLVAKG 200 (205)
T ss_pred ---ccccCCCceEEEEEec
Confidence 1223334466665543
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00026 Score=56.85 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=39.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHH------cCCEEEEEec-hhHHHHHHHHHHHhh
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL------LGAQVILTDL-PDRLRLLKKNIENNL 167 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~------~g~~V~~tD~-~~~l~~~~~N~~~n~ 167 (281)
.+..+|+|+|||-|.++..++. .+.+|+++|. +..++.+++..+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4567999999999999999988 4568999999 777888887777655
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00027 Score=68.58 Aligned_cols=106 Identities=14% Similarity=0.021 Sum_probs=72.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+..+||||||.|-..+.+|+..+ .++|+|+ ...+..+.+.+...++. |+.+...+... ....+.+.++|-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-----N~~~~~~~~~~-~~~~~~~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-----NFLLFPNNLDL-ILNDLPNNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-----eEEEEcCCHHH-HHHhcCcccccE
Confidence 466899999999988888887554 5999999 66666666666665554 56665544321 112244566776
Q ss_pred EEE--ccccCCCC------cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLG--SDVIYSEG------AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia--~d~iy~~~------~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|.. .|...... ..+.+++.+.++|+|||.+.+..-
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 665 44443322 257899999999999999887644
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0016 Score=50.31 Aligned_cols=103 Identities=23% Similarity=0.243 Sum_probs=64.6
Q ss_pred EEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC-CCCcEEE
Q 023543 126 IVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ-PLPDYVL 200 (281)
Q Consensus 126 VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~-~~fD~Ii 200 (281)
++|+|||+|... .++... ..++++|. +.++...+.+... ... ..+.+...++... ...+.+ ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~-~~~~~~~~~~d~~- 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL----GLVDFVVADALGG-VLPFEDSASFDLV- 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC----CceEEEEeccccC-CCCCCCCCceeEE-
Confidence 999999999866 444433 37899999 6777764433322 211 1144455443321 122233 479999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
.....++......++..+.+.++++|.+++......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 544443322288999999999999999888766543
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00012 Score=62.61 Aligned_cols=102 Identities=23% Similarity=0.258 Sum_probs=53.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHh-------hcCCCCCCceEEEEEecCCCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENN-------LRHGDLRGSAVVTELTWGDDPDQD 190 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n-------~~~~~~~~~i~~~~l~w~~~~~~~ 190 (281)
-++...+|||||.|.+-+.+|. .+. +++|+++ +...+.++.+.+.. +.. ...+.+.. ++..+..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~---~~~v~l~~---gdfl~~~ 114 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR---PGKVELIH---GDFLDPD 114 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB------EEEEEC---S-TTTHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc---cccceeec---cCccccH
Confidence 4678999999999987776664 455 5999999 76666665544332 221 12344343 3322211
Q ss_pred cC---CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 191 LI---QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 191 ~~---~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
.. -...|+|.++...|.++....|.+. ...||+|.+++
T Consensus 115 ~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~-~~~lk~G~~II 155 (205)
T PF08123_consen 115 FVKDIWSDADVVFVNNTCFDPDLNLALAEL-LLELKPGARII 155 (205)
T ss_dssp HHHHHGHC-SEEEE--TTT-HHHHHHHHHH-HTTS-TT-EEE
T ss_pred hHhhhhcCCCEEEEeccccCHHHHHHHHHH-HhcCCCCCEEE
Confidence 10 1346999999999887766666433 34567777764
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00013 Score=69.36 Aligned_cols=125 Identities=12% Similarity=0.051 Sum_probs=73.2
Q ss_pred CceecchHHHHHHHHhhhhccCccccCC---CeEEEECCCcCHHHHHHHHcCCEEEEEe---c-hhHHHHHHHHHHHhhc
Q 023543 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHG---KKIVELGSGCGLVGCIAALLGAQVILTD---L-PDRLRLLKKNIENNLR 168 (281)
Q Consensus 96 G~~~W~~s~~la~~l~~~~~~~~~~~~~---~~VLELGcGtG~~~i~~a~~g~~V~~tD---~-~~~l~~~~~N~~~n~~ 168 (281)
|.....++..-.+.|.+.+. ....+ ..+||+|||+|.+|..+..++..++.+- . +..++.|.+ .|+
T Consensus 91 gt~F~~Ga~~Yid~i~~~~~---~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGv 163 (506)
T PF03141_consen 91 GTMFPHGADHYIDQIAEMIP---LIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGV 163 (506)
T ss_pred CccccCCHHHHHHHHHHHhh---ccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCc
Confidence 33444455544555554332 11233 3789999999999888888776543332 2 222333321 222
Q ss_pred CCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCc-HHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 169 HGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA-VGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 169 ~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~-~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
.. -+.+. ......++...||+|-++.|.-.... -..++-.+.|+|+|||.++++.+.-+
T Consensus 164 pa----~~~~~-----~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 164 PA----MIGVL-----GSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ch----hhhhh-----ccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 20 01010 00122356678999999998765322 24577888999999999999987644
|
; GO: 0008168 methyltransferase activity |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.001 Score=60.85 Aligned_cols=111 Identities=15% Similarity=0.072 Sum_probs=65.5
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..+|+++|||||++|-.+-.+.+.|++|+++|...+-..+ ..+ +++....-+--...+ ...++|++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L----~~~-------~~V~h~~~d~fr~~p---~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSL----MDT-------GQVEHLRADGFKFRP---PRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhh----hCC-------CCEEEEeccCcccCC---CCCCCCEE
Confidence 4689999999999999999999999999999974442222 221 345444433111111 14678976
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCC--cEEEEEEee---eChhHHHHHHHHHh
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQ--TTIFLAGEL---RNDSVLEYFLEAAM 248 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~--g~~~l~~~~---r~~~~~~~fl~~~~ 248 (281)
+ ||++-.+ ..+.+.+.+.+..| ..+++.-+. +.......+++.+.
T Consensus 275 V-cDmve~P---~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~ 324 (357)
T PRK11760 275 V-CDMVEKP---ARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIE 324 (357)
T ss_pred E-EecccCH---HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6 6666443 35555566666544 334444433 22233455665444
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0045 Score=53.71 Aligned_cols=146 Identities=21% Similarity=0.214 Sum_probs=86.9
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-h-hHHHHHHHHHHHhhcCCCCCCce
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-P-DRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~-~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
=.++..|...+.+. ...++|+.|||+|+-||-+.-++.+.||+ |+++|. - +.--.+|.+ .++
T Consensus 61 SRG~~KL~~ale~F----~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d-----------~rV 125 (245)
T COG1189 61 SRGGLKLEKALEEF----ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND-----------PRV 125 (245)
T ss_pred ccHHHHHHHHHHhc----CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC-----------CcE
Confidence 34577888888764 34689999999999999999999999885 999999 3 232223311 222
Q ss_pred EEEE-EecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe---------------eeChh--
Q 023543 177 VVTE-LTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE---------------LRNDS-- 238 (281)
Q Consensus 177 ~~~~-l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~---------------~r~~~-- 238 (281)
.+.+ .+.....+..+ .++.|++++-..+ -.+..++..+..++++++.++.-.. .+++.
T Consensus 126 ~~~E~tN~r~l~~~~~-~~~~d~~v~DvSF---ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~ 201 (245)
T COG1189 126 IVLERTNVRYLTPEDF-TEKPDLIVIDVSF---ISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLH 201 (245)
T ss_pred EEEecCChhhCCHHHc-ccCCCeEEEEeeh---hhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchH
Confidence 2222 11111112222 2367877753332 2356677788888888876543321 13332
Q ss_pred --HHHHHHHHHhc-CCeEEEEecCCCCCC
Q 023543 239 --VLEYFLEAAMK-DFVIGRVEQTQWHPD 264 (281)
Q Consensus 239 --~~~~fl~~~~~-~f~v~~i~~~~~~~~ 264 (281)
....+.+.+.. +|.+..+......-.
T Consensus 202 ~~v~~~i~~~~~~~g~~~~gl~~Spi~G~ 230 (245)
T COG1189 202 AEVLSKIENFAKELGFQVKGLIKSPIKGG 230 (245)
T ss_pred HHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence 23333333443 799888876655443
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00039 Score=59.27 Aligned_cols=109 Identities=15% Similarity=0.209 Sum_probs=79.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|++||++|-|.|++.-.+..... +-+.++. +++++.++.+.-.. ..++.+....|.+..+. +++..||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e------k~nViil~g~WeDvl~~-L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE------KENVIILEGRWEDVLNT-LPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc------ccceEEEecchHhhhcc-ccccCcce
Confidence 6899999999999998877766444 4677788 99998888765433 35688888899876654 45677996
Q ss_pred EEEcccc-CCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 199 VLGSDVI-YSEGAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 199 Iia~d~i-y~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
|.- |+. -..+++..+.+.+.+||||+|++-+......+
T Consensus 173 I~y-DTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 173 IYY-DTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred eEe-echhhHHHHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 652 332 22456788888999999999987666544433
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=8.7e-05 Score=63.75 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=74.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
....++|||||-|.++-.+-..+. +++.+|. -.|++.++.. +.+ .+....+- ++.....+...++|+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp--------~i~~~~~v-~DEE~Ldf~ens~DLi 141 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDP--------SIETSYFV-GDEEFLDFKENSVDLI 141 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCC--------ceEEEEEe-cchhcccccccchhhh
Confidence 346899999999998887777665 5999999 6788776632 222 23333322 2222233566789999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|++-.+|+..+++.-+..++..|||.|.++-+
T Consensus 142 isSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 142 ISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 99999999999999999999999999987644
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00038 Score=61.49 Aligned_cols=139 Identities=22% Similarity=0.270 Sum_probs=76.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhc-C------------CC----------CCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLR-H------------GD----------LRG 174 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~-~------------~~----------~~~ 174 (281)
..+|.++||+|||.-+.-+..|..-+ +|+++|+ +.-++.+++=++.-+. + .. .+.
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 46788999999998766555554444 6999999 6666655543322210 0 00 011
Q ss_pred ceE-EEEEecCCCCCCC--c-CCCCCcEEEEccccCC----CCcHHHHHHHHHHhhCCCcEEEEEEeeeCh---------
Q 023543 175 SAV-VTELTWGDDPDQD--L-IQPLPDYVLGSDVIYS----EGAVGDLLDTLLQLCGTQTTIFLAGELRND--------- 237 (281)
Q Consensus 175 ~i~-~~~l~w~~~~~~~--~-~~~~fD~Iia~d~iy~----~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~--------- 237 (281)
.++ +...|-....+.. . ..++||+|+++-++-. .+.+...++.+.++|||||.++++.-....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 122 2232322222111 1 1235999999877643 455777888888899999998887654320
Q ss_pred ---hHHHHHHHHH-h-cCCeEEEEec
Q 023543 238 ---SVLEYFLEAA-M-KDFVIGRVEQ 258 (281)
Q Consensus 238 ---~~~~~fl~~~-~-~~f~v~~i~~ 258 (281)
..-+.|+... . .||.+.....
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 1123344333 3 4999888873
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.002 Score=57.67 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=60.5
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-CCcCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-QDLIQP 194 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~~~~~~ 194 (281)
.+..++|||+|||+|....++.. .+ .+++++|. +.|+++++.-++.. ... ....|..... ......
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~-~~~--------~~~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG-PNN--------RNAEWRRVLYRDFLPFP 101 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc-ccc--------ccchhhhhhhcccccCC
Confidence 47788999999999975544443 22 35999999 77888777644332 110 0111111111 111223
Q ss_pred CCcEEEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 195 LPDYVLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+.|+|+++.++-... ....+++.+.+.+++ .++++.+
T Consensus 102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 459999999987643 355566666555555 5555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00026 Score=59.08 Aligned_cols=136 Identities=18% Similarity=0.100 Sum_probs=68.7
Q ss_pred hHHHHHHHHhhhhccCccc-c-CCCeEEEECCCcCHHHHHHHHcC---CEEEEEechhHHHHHHHHHHHhhcCCCCCCce
Q 023543 102 SGVVLGKFLEHAVDSGMLL-L-HGKKIVELGSGCGLVGCIAALLG---AQVILTDLPDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~-~-~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
++..|.+-+... ... . .+.+||||||++|-.+-++...+ .+|+++|+..+-.. .+-.. ..+++
T Consensus 5 a~~KL~ei~~~~----~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~------~~~~~--i~~d~ 72 (181)
T PF01728_consen 5 AAFKLYEIDEKF----KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL------QNVSF--IQGDI 72 (181)
T ss_dssp HHHHHHHHHHTT----SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------TTEEB--TTGGG
T ss_pred HHHHHHHHHHHC----CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc------cceee--eeccc
Confidence 455566665543 111 2 45899999999999999988877 57999999333000 00000 00111
Q ss_pred EEEEEecCCCCCCCcC--CCCCcEEEEccccCC-----------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHH
Q 023543 177 VVTELTWGDDPDQDLI--QPLPDYVLGSDVIYS-----------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYF 243 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~--~~~fD~Iia~d~iy~-----------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~f 243 (281)
......+.....+. ..+||+|++=-.... .......+..+..+|++||.+++-.-. .... +.+
T Consensus 73 --~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~-~~~~-~~~ 148 (181)
T PF01728_consen 73 --TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK-GPEI-EEL 148 (181)
T ss_dssp --EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS-STTS-HHH
T ss_pred --chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc-CccH-HHH
Confidence 11111111111111 268998886221111 112333444555678999986654332 2222 357
Q ss_pred HHHHhcCCeE
Q 023543 244 LEAAMKDFVI 253 (281)
Q Consensus 244 l~~~~~~f~v 253 (281)
+..+...|..
T Consensus 149 ~~~l~~~F~~ 158 (181)
T PF01728_consen 149 IYLLKRCFSK 158 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhCCeE
Confidence 7777777763
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0038 Score=55.58 Aligned_cols=135 Identities=19% Similarity=0.050 Sum_probs=79.9
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEech-hHHHHHHHHHHHhhcC------CC-----------------------
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDLP-DRLRLLKKNIENNLRH------GD----------------------- 171 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~-~~l~~~~~N~~~n~~~------~~----------------------- 171 (281)
.+.+||==|||.|.++.-+|++|..|.+.|.+ -|+-.. |.-.|... +-
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 45699999999999999999999999999995 453222 22223211 00
Q ss_pred --------CCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC----h--
Q 023543 172 --------LRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN----D-- 237 (281)
Q Consensus 172 --------~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~----~-- 237 (281)
...+......|+.+..........||.|+.+-.|=....+-..++++.++|||||..+=.++... .
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~ 213 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSI 213 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCC
Confidence 00011111111111111111125899999884443356688899999999999997665554422 1
Q ss_pred -------hHHHHHHHHHhc-CCeEEEEec
Q 023543 238 -------SVLEYFLEAAMK-DFVIGRVEQ 258 (281)
Q Consensus 238 -------~~~~~fl~~~~~-~f~v~~i~~ 258 (281)
-..+.....+.. ||++..-+.
T Consensus 214 ~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 214 PNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 123444555543 898765443
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=57.80 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=62.3
Q ss_pred CceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCC
Q 023543 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRG 174 (281)
Q Consensus 96 G~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~ 174 (281)
|-.+-.-..++...+... ..-++..|||+|-|||.+...+...|++|+++++ +.|+..+++...---.. +
T Consensus 37 GQHilkNp~v~~~I~~ka-----~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~----~ 107 (315)
T KOG0820|consen 37 GQHILKNPLVIDQIVEKA-----DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKS----G 107 (315)
T ss_pred chhhhcCHHHHHHHHhcc-----CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCcc----c
Confidence 444444455555554432 2356789999999999999999999999999999 88988887766543322 4
Q ss_pred ceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 175 SAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 175 ~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
..++...| ....+ .+.||.+|++
T Consensus 108 kLqV~~gD---~lK~d--~P~fd~cVsN 130 (315)
T KOG0820|consen 108 KLQVLHGD---FLKTD--LPRFDGCVSN 130 (315)
T ss_pred eeeEEecc---cccCC--Ccccceeecc
Confidence 55555533 23322 2567777763
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0017 Score=58.25 Aligned_cols=104 Identities=11% Similarity=0.082 Sum_probs=69.0
Q ss_pred CeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
++||-||-|.|...-.+.+.. .+++++|+ +++++++++-+..-..... ..++.+..-|-.+... . ...+||+||
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~-~-~~~~fDvIi 154 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLR-D-CEEKFDVII 154 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHH-h-CCCcCCEEE
Confidence 699999999998888888865 47999999 8889999976554321111 2455555433111111 1 123799988
Q ss_pred E--ccccCCCC---cHHHHHHHHHHhhCCCcEEEEE
Q 023543 201 G--SDVIYSEG---AVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 201 a--~d~iy~~~---~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
. .|.. -+. .-..+.+.++++|+++|+++.-
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 6 2221 110 1378999999999999987554
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.023 Score=49.00 Aligned_cols=150 Identities=12% Similarity=0.140 Sum_probs=82.4
Q ss_pred cCceecch--HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhc
Q 023543 95 TGSVMWDS--GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLR 168 (281)
Q Consensus 95 tG~~~W~~--s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~ 168 (281)
.+.|+|+- |.+.|..+... + +....+|.+||=||+.+|..--.++. -| ..|++++. +...+.+-.-++..
T Consensus 46 ~eYR~W~P~RSKLaAai~~Gl-~-~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-- 121 (229)
T PF01269_consen 46 VEYRVWNPFRSKLAAAILKGL-E-NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-- 121 (229)
T ss_dssp EEEEEE-TTT-HHHHHHHTT--S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--
T ss_pred cceeecCchhhHHHHHHHcCc-c-ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--
Confidence 36788876 55555554432 1 12245789999999999976555554 34 46999999 65544333222221
Q ss_pred CCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-------hHHH
Q 023543 169 HGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND-------SVLE 241 (281)
Q Consensus 169 ~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-------~~~~ 241 (281)
.|+-..--|-..+..-...-+..|+|. +|+- .+...+-++......||+||.++++-..|.- .++.
T Consensus 122 -----~NIiPIl~DAr~P~~Y~~lv~~VDvI~-~DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~ 194 (229)
T PF01269_consen 122 -----PNIIPILEDARHPEKYRMLVEMVDVIF-QDVA-QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFA 194 (229)
T ss_dssp -----TTEEEEES-TTSGGGGTTTS--EEEEE-EE-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHH
T ss_pred -----CceeeeeccCCChHHhhcccccccEEE-ecCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHH
Confidence 244434323221111011124667554 4544 4677788888888999999999998776532 2344
Q ss_pred HHHHHHhc-CCeEEE
Q 023543 242 YFLEAAMK-DFVIGR 255 (281)
Q Consensus 242 ~fl~~~~~-~f~v~~ 255 (281)
.=.+.+++ +|++..
T Consensus 195 ~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 195 EEVKKLKEEGFKPLE 209 (229)
T ss_dssp HHHHHHHCTTCEEEE
T ss_pred HHHHHHHHcCCChhe
Confidence 44555554 788643
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0022 Score=56.66 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=52.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC-CCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP-LPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~-~fD~ 198 (281)
.++.+|||+|+|.|.+...+++.+.+|+++++ +.++..+++.... ..++.+..-| .....+..- .++.
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~D---aLk~d~~~l~~~~~ 98 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP-------YDNLTVINGD---ALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc-------ccceEEEeCc---hhcCcchhhcCCCE
Confidence 34789999999999999999999999999999 7778888776541 1355555533 222222211 4666
Q ss_pred EEEccccCC
Q 023543 199 VLGSDVIYS 207 (281)
Q Consensus 199 Iia~d~iy~ 207 (281)
|+++=. |+
T Consensus 99 vVaNlP-Y~ 106 (259)
T COG0030 99 VVANLP-YN 106 (259)
T ss_pred EEEcCC-Cc
Confidence 666544 44
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0019 Score=58.08 Aligned_cols=147 Identities=20% Similarity=0.226 Sum_probs=93.7
Q ss_pred ceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCC
Q 023543 97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLRHGDL 172 (281)
Q Consensus 97 ~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (281)
..+++.+-.++..+.. ..+|.+|||++||.|-=+..++. .+ ..|++.|+ ...+..++.|+.+.+..
T Consensus 67 ~~vQd~sS~l~~~~L~-------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~--- 136 (283)
T PF01189_consen 67 FYVQDESSQLVALALD-------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF--- 136 (283)
T ss_dssp EEEHHHHHHHHHHHHT-------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S---
T ss_pred EEeccccccccccccc-------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc---
Confidence 3456666555555443 35788999999999966666655 33 47999999 78899999999998876
Q ss_pred CCceEEEEEecCCCCCCCcCCCCCcEEEE------ccccCCC----------------CcHHHHHHHHHHhh----CCCc
Q 023543 173 RGSAVVTELTWGDDPDQDLIQPLPDYVLG------SDVIYSE----------------GAVGDLLDTLLQLC----GTQT 226 (281)
Q Consensus 173 ~~~i~~~~l~w~~~~~~~~~~~~fD~Iia------~d~iy~~----------------~~~~~ll~~l~~ll----~~~g 226 (281)
++.+...|.... ........||.|+. ..++... .....+++...+++ +|||
T Consensus 137 --~v~~~~~D~~~~-~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG 213 (283)
T PF01189_consen 137 --NVIVINADARKL-DPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGG 213 (283)
T ss_dssp --SEEEEESHHHHH-HHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEE
T ss_pred --eEEEEeeccccc-cccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCC
Confidence 565555332111 00112235898886 1122221 11566888888999 9999
Q ss_pred EEEEE-Ee---eeChhHHHHHHHHHhcCCeEEEEe
Q 023543 227 TIFLA-GE---LRNDSVLEYFLEAAMKDFVIGRVE 257 (281)
Q Consensus 227 ~~~l~-~~---~r~~~~~~~fl~~~~~~f~v~~i~ 257 (281)
+++.+ +. .-+....+.|++.. ..|.+..+.
T Consensus 214 ~lvYsTCS~~~eENE~vV~~fl~~~-~~~~l~~~~ 247 (283)
T PF01189_consen 214 RLVYSTCSLSPEENEEVVEKFLKRH-PDFELVPIP 247 (283)
T ss_dssp EEEEEESHHHGGGTHHHHHHHHHHS-TSEEEECCE
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhC-CCcEEEecc
Confidence 86555 33 34566778787653 356655544
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0013 Score=58.52 Aligned_cols=108 Identities=25% Similarity=0.342 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l 181 (281)
..-+++.+.+.++ ..++..|||+|+|+|.++..++..+.+|+++|+ +...+.+++....+ .++.+..-
T Consensus 15 ~~~~~~~Iv~~~~----~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~-------~~~~vi~~ 83 (262)
T PF00398_consen 15 DPNIADKIVDALD----LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASN-------PNVEVING 83 (262)
T ss_dssp HHHHHHHHHHHHT----CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTC-------SSEEEEES
T ss_pred CHHHHHHHHHhcC----CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhc-------ccceeeec
Confidence 3344555554432 237889999999999999999999999999999 77888888765522 46777776
Q ss_pred ecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCC
Q 023543 182 TWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGT 224 (281)
Q Consensus 182 ~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~ 224 (281)
|..+.............|+++ .-|+ .-.+++..+...-+.
T Consensus 84 D~l~~~~~~~~~~~~~~vv~N-lPy~--is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 84 DFLKWDLYDLLKNQPLLVVGN-LPYN--ISSPILRKLLELYRF 123 (262)
T ss_dssp -TTTSCGGGHCSSSEEEEEEE-ETGT--GHHHHHHHHHHHGGG
T ss_pred chhccccHHhhcCCceEEEEE-eccc--chHHHHHHHhhcccc
Confidence 544322111111233456665 5553 234455554443333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0034 Score=54.12 Aligned_cols=106 Identities=18% Similarity=0.167 Sum_probs=74.9
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH---cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCc---C
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL---LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL---I 192 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~---~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~---~ 192 (281)
....+++||||.=||.-++..|. .+.+|+++|+ ++..+...+-++..+.. .++.+....-.+..+..+ .
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~----~KI~~i~g~a~esLd~l~~~~~ 146 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD----HKITFIEGPALESLDELLADGE 146 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc----ceeeeeecchhhhHHHHHhcCC
Confidence 46889999999999988877776 3668999999 77888888888887776 567777644332222222 2
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...||++..- .+..........+-+++++||++++-.
T Consensus 147 ~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 147 SGTFDFAFVD---ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CCceeEEEEc---cchHHHHHHHHHHHhhcccccEEEEec
Confidence 3568987641 123334477788888999999877654
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0046 Score=56.51 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=68.1
Q ss_pred cCCCeEEEECCCcCH-HHHHHHH---c--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE--ecCCCCC---
Q 023543 121 LHGKKIVELGSGCGL-VGCIAAL---L--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL--TWGDDPD--- 188 (281)
Q Consensus 121 ~~~~~VLELGcGtG~-~~i~~a~---~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l--~w~~~~~--- 188 (281)
.++..++|||||.|. ..+.+.. . ...++++|+ .++|+.+..++..... ..+.+..+ ++.+...
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-----p~l~v~~l~gdy~~~l~~l~ 149 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-----SHVRCAGLLGTYDDGLAWLK 149 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-----CCeEEEEEEecHHHHHhhcc
Confidence 356689999999995 3333322 2 356999999 6789988888873222 23544332 3322211
Q ss_pred CCcCCCCCcEEEEcc-ccCC--CCcHHHHHHHHHH-hhCCCcEEEEEEee
Q 023543 189 QDLIQPLPDYVLGSD-VIYS--EGAVGDLLDTLLQ-LCGTQTTIFLAGEL 234 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d-~iy~--~~~~~~ll~~l~~-ll~~~g~~~l~~~~ 234 (281)
.........+++... .+-| +.....+++.+++ .|+|++.+++..-.
T Consensus 150 ~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 150 RPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred cccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 000112346666543 5544 5667789999999 99999998887543
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.031 Score=48.03 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=81.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+.++.|+||--|.+++.+-+.+. .+++.|+ +..++.+.+|+..|++. .++.+...| .+...-.+..+|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~----~~i~vr~~d---gl~~l~~~d~~d~ 88 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS----ERIDVRLGD---GLAVLELEDEIDV 88 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc----ceEEEeccC---CccccCccCCcCE
Confidence 566799999999999999998654 5999999 78899999999999876 577777754 2333334457899
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeE
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVI 253 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v 253 (281)
|+-+.+= -..+..+++.-...++.--++ +-++..+...++.|+.. .+|.+
T Consensus 89 ivIAGMG--G~lI~~ILee~~~~l~~~~rl-ILQPn~~~~~LR~~L~~--~~~~I 138 (226)
T COG2384 89 IVIAGMG--GTLIREILEEGKEKLKGVERL-ILQPNIHTYELREWLSA--NSYEI 138 (226)
T ss_pred EEEeCCc--HHHHHHHHHHhhhhhcCcceE-EECCCCCHHHHHHHHHh--CCcee
Confidence 8877664 222344555555555443333 44555566667777744 45553
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0033 Score=55.14 Aligned_cols=86 Identities=17% Similarity=0.258 Sum_probs=58.6
Q ss_pred CCC--eEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCC----CCCceEEEEEecCCCCCCCcCCC
Q 023543 122 HGK--KIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGD----LRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 122 ~~~--~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~----~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
+|. +|||+=+|+|..|+.++.+|++|+++|. +.+..+++.|++....... ...++.+..-+-.+.... ...
T Consensus 86 ~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~--~~~ 163 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD--ITP 163 (250)
T ss_pred CCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh--CCC
Confidence 455 8999999999999999999999999999 7788899999887421100 012455544332111111 123
Q ss_pred CCcEEEEccccCCCCc
Q 023543 195 LPDYVLGSDVIYSEGA 210 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~~ 210 (281)
+||+|. .|.+|....
T Consensus 164 ~fDVVY-lDPMfp~~~ 178 (250)
T PRK10742 164 RPQVVY-LDPMFPHKQ 178 (250)
T ss_pred CCcEEE-ECCCCCCCc
Confidence 699766 788887544
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0018 Score=58.44 Aligned_cols=45 Identities=18% Similarity=0.067 Sum_probs=38.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIEN 165 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~ 165 (281)
.++..+||.+||.|--+..++... .+|+++|. +++++.+++++..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 457899999999999888888753 58999999 8999999987654
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.01 Score=52.97 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=62.3
Q ss_pred CeEEEECCCc-CHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHH-HhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 124 KKIVELGSGC-GLVGCIAALL---GAQVILTDL-PDRLRLLKKNIE-NNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 124 ~~VLELGcGt-G~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~-~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
++|+=||||. -+.++.+++. +..|+++|+ +++++.+++-+. ..++. .++.+...|-.+.. ..-..||
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~----~~m~f~~~d~~~~~---~dl~~~D 194 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS----KRMSFITADVLDVT---YDLKEYD 194 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG----GG----S
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc----CCeEEEecchhccc---cccccCC
Confidence 5999999996 7888888863 457999999 889999988776 44554 46777775532211 1125799
Q ss_pred EEEEccccCC-CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYS-EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~-~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+-+..+.. ...-..++..+.+.++||+.+++-.
T Consensus 195 vV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 195 VVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 9998888763 5678999999999999999877653
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.011 Score=47.38 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=63.9
Q ss_pred EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEcc---------ccCCCCcHHHHH
Q 023543 146 QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSD---------VIYSEGAVGDLL 215 (281)
Q Consensus 146 ~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d---------~iy~~~~~~~ll 215 (281)
+|++.|+ +++++.++++++.++.. .++.+..-.=.+ .+..+...++|.++.+- ++-.++.--..+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~----~~v~li~~sHe~-l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE----DRVTLILDSHEN-LDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G----SGEEEEES-GGG-GGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC----CcEEEEECCHHH-HHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 6899999 89999999999998775 356655532111 11112223778777532 122233345667
Q ss_pred HHHHHhhCCCcEEEEEEee-eCh-----hHHHHHHHHHh-cCCeEEEEec
Q 023543 216 DTLLQLCGTQTTIFLAGEL-RND-----SVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 216 ~~l~~ll~~~g~~~l~~~~-r~~-----~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
+.+.++|++||++.++... +.. ..+..|+..+. +.|.|.+...
T Consensus 76 ~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~ 125 (140)
T PF06962_consen 76 EAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQF 125 (140)
T ss_dssp HHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEE
T ss_pred HHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEc
Confidence 7777889999987766544 332 24566776665 4788877754
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0015 Score=55.91 Aligned_cols=62 Identities=23% Similarity=0.139 Sum_probs=55.1
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP 187 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~ 187 (281)
....|+|.-||.|-..+-.|..++.|+++|+ +.-+..|+.|++-.|+. +++.+.+.||-+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~----~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVP----DRITFICGDFLDLA 156 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCC----ceeEEEechHHHHH
Confidence 5568999999999889999999999999999 77799999999999987 68999998886543
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.00049 Score=58.35 Aligned_cols=94 Identities=20% Similarity=0.175 Sum_probs=66.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
...++||||+|-|-+...++..--+|++|+. ..|...+++. +. ++ ...++|.+ .+-+||+|.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk----~y------nV-l~~~ew~~------t~~k~dli~ 174 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK----NY------NV-LTEIEWLQ------TDVKLDLIL 174 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc----CC------ce-eeehhhhh------cCceeehHH
Confidence 4579999999999888877765556999998 5665555421 11 11 23445542 234789999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCC-CcEEEEEE
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGT-QTTIFLAG 232 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~-~g~~~l~~ 232 (281)
|-.++=.-.+.-.|++-++..+.| +|+++++-
T Consensus 175 clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 175 CLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 877765556667899999999998 78877663
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.049 Score=50.97 Aligned_cols=106 Identities=23% Similarity=0.277 Sum_probs=73.2
Q ss_pred cCCCeEEEECCCcCH-HHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGL-VGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~-~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+|||+.|-.|- ....++.+. ..|++.|. ...++.++.|+.+.|+. +..+..+|-.......+.. +|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-----ntiv~n~D~~ef~~~~~~~-~f 313 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-----NTIVSNYDGREFPEKEFPG-SF 313 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-----ceEEEccCcccccccccCc-cc
Confidence 578899999999873 333444433 35999999 66799999999999976 5556666633222233333 79
Q ss_pred cEEEE----cc--ccCCCC----------------cHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLG----SD--VIYSEG----------------AVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia----~d--~iy~~~----------------~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|-|+. +. +++.+. ....|+....+++++||+++.+.
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 99884 33 454432 25678888888999999876654
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.21 Score=42.54 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=83.3
Q ss_pred ceecch--HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cC-CEEEEEec-hhHHHHHHHHH-HHhhcCC
Q 023543 97 SVMWDS--GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LG-AQVILTDL-PDRLRLLKKNI-ENNLRHG 170 (281)
Q Consensus 97 ~~~W~~--s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g-~~V~~tD~-~~~l~~~~~N~-~~n~~~~ 170 (281)
.+.|+. |.+.|..|... . +...-+|.+||=||+-+|..--..+. .| ..|++++. +.+.+-+-.-+ +++
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl-~-~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~---- 124 (231)
T COG1889 51 YREWNPRRSKLAAAILKGL-K-NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP---- 124 (231)
T ss_pred eeeeCcchhHHHHHHHcCc-c-cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC----
Confidence 578876 56666666543 1 12245789999999999965544454 44 45999999 66543332222 222
Q ss_pred CCCCceEEEEEecCCCCCCCcCCCCC-cEEEEccccCC----CCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-------h
Q 023543 171 DLRGSAVVTELTWGDDPDQDLIQPLP-DYVLGSDVIYS----EGAVGDLLDTLLQLCGTQTTIFLAGELRND-------S 238 (281)
Q Consensus 171 ~~~~~i~~~~l~w~~~~~~~~~~~~f-D~Iia~d~iy~----~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-------~ 238 (281)
|+-..--|... ..+| -+|=.-|++|. +.+.+-+.......|+++|.++++-..|.- .
T Consensus 125 ----Ni~PIL~DA~~-------P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~ 193 (231)
T COG1889 125 ----NIIPILEDARK-------PEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE 193 (231)
T ss_pred ----CceeeecccCC-------cHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH
Confidence 22222222111 1122 12222344443 566777888889999999999999888762 2
Q ss_pred HHHHHHHHHhc-CCeEEEE
Q 023543 239 VLEYFLEAAMK-DFVIGRV 256 (281)
Q Consensus 239 ~~~~fl~~~~~-~f~v~~i 256 (281)
+++.-.+.+.. +|++...
T Consensus 194 vf~~ev~kL~~~~f~i~e~ 212 (231)
T COG1889 194 VFKDEVEKLEEGGFEILEV 212 (231)
T ss_pred HHHHHHHHHHhcCceeeEE
Confidence 34433444543 6775544
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.053 Score=50.00 Aligned_cols=171 Identities=13% Similarity=0.051 Sum_probs=98.7
Q ss_pred ceEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccc-cCCCeEEEECCCcCHHHHHHHHcC-C-
Q 023543 69 LNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLL-LHGKKIVELGSGCGLVGCIAALLG-A- 145 (281)
Q Consensus 69 ~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~-~~~~~VLELGcGtG~~~i~~a~~g-~- 145 (281)
..+-++-.|.++++..+.+..+. +..=-+|-+..+-..-.. ..-.+||=||-|-|+..-.+.+.. .
T Consensus 246 Q~iVvTr~g~d~rLYldG~LQfs-----------TrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~ 314 (508)
T COG4262 246 QRIVVTRRGDDLRLYLDGGLQFS-----------TRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVE 314 (508)
T ss_pred ceEEEEEecCceEEEEcCceeee-----------echhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcc
Confidence 44555566888888887765321 111112222211000011 234699999999999888887743 3
Q ss_pred EEEEEec-hhHHHHHHHHHHHhhcCCC--CCCceEEEEEecCCCCCCCcCCCCCcEEEEc--cc-------cCCCCcHHH
Q 023543 146 QVILTDL-PDRLRLLKKNIENNLRHGD--LRGSAVVTELTWGDDPDQDLIQPLPDYVLGS--DV-------IYSEGAVGD 213 (281)
Q Consensus 146 ~V~~tD~-~~~l~~~~~N~~~n~~~~~--~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~--d~-------iy~~~~~~~ 213 (281)
+|+.+|+ |+|++.+++|......+.. ...++++..-|-.+.... ....||+||-- |. +|. .+
T Consensus 315 qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~--a~~~fD~vIVDl~DP~tps~~rlYS----~e 388 (508)
T COG4262 315 QITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT--AADMFDVVIVDLPDPSTPSIGRLYS----VE 388 (508)
T ss_pred eEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh--hcccccEEEEeCCCCCCcchhhhhh----HH
Confidence 6999999 9999999977544332211 124556555432221111 23479988851 11 222 56
Q ss_pred HHHHHHHhhCCCcEEEEEEeeeC--hhHHHHHHHHHh-cCCeEEEE
Q 023543 214 LLDTLLQLCGTQTTIFLAGELRN--DSVLEYFLEAAM-KDFVIGRV 256 (281)
Q Consensus 214 ll~~l~~ll~~~g~~~l~~~~r~--~~~~~~fl~~~~-~~f~v~~i 256 (281)
+...+++.++++|.+++-...-. +..+-.....++ .||.++..
T Consensus 389 FY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Py 434 (508)
T COG4262 389 FYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPY 434 (508)
T ss_pred HHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeee
Confidence 78888999999999876543322 333333344555 37776654
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0057 Score=55.36 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=64.6
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..|.+||=+|||. |+..+..|+ .|+ +|+.+|. +..++.|++ +-.-......... ..-+..+.....+....|
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~---~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKS---SPQELAELVEKALGKKQP 243 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccc---cHHHHHHHHHhhccccCC
Confidence 4688999999996 988888887 677 6999999 888999987 3221111000000 000000000111222447
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+.+.|.-. +.-+++.-..++.+|.+.++.
T Consensus 244 d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 244 DVTFDCSGA------EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CeEEEccCc------hHHHHHHHHHhccCCEEEEec
Confidence 877776665 888888889999999977775
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0077 Score=56.34 Aligned_cols=103 Identities=20% Similarity=0.205 Sum_probs=70.6
Q ss_pred CCeEEEECCCcCHHHHHHHHc--C-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 123 GKKIVELGSGCGLVGCIAALL--G-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~--g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
+-+|||-=||||+=|+-.++- + .+|++-|+ +++++.+++|++.|++.. +++.+...|-..... .....||+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~---~~~~v~~~DAn~ll~--~~~~~fD~ 124 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED---ERIEVSNMDANVLLY--SRQERFDV 124 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG---CCEEEEES-HHHHHC--HSTT-EEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC---ceEEEehhhHHHHhh--hccccCCE
Confidence 458999999999999988875 3 36999999 889999999999999872 256666644321110 13567885
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
| --|+. ....+++....+.++.||.+.++...
T Consensus 125 I-DlDPf---GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 125 I-DLDPF---GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp E-EE--S---S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred E-EeCCC---CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 4 34443 34578999999999999999998754
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.1 Score=46.72 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=34.8
Q ss_pred eEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHH
Q 023543 125 KIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIE 164 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~ 164 (281)
+|+||.||+|..++.+...|.+ |.++|+ +.+++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 6999999999888888888887 789999 788888888764
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.025 Score=52.11 Aligned_cols=99 Identities=23% Similarity=0.309 Sum_probs=70.4
Q ss_pred CCeEEEECCCcCHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC--CCCc
Q 023543 123 GKKIVELGSGCGLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ--PLPD 197 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~--~~fD 197 (281)
.++|||-=||||+=||-.|. .+. +|++-|+ +++++++++|++.|... +..+.+-|- ...+.. ..||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-----~~~v~n~DA----N~lm~~~~~~fd 123 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-----DAEVINKDA----NALLHELHRAFD 123 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-----cceeecchH----HHHHHhcCCCcc
Confidence 78999999999999998887 455 7999999 99999999999999322 233333221 111111 4677
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+ |--|++ ....+++.+..+..+.+|.+-++...
T Consensus 124 ~-IDiDPF---GSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 124 V-IDIDPF---GSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred E-EecCCC---CCCchHHHHHHHHhhcCCEEEEEecc
Confidence 4 334443 33467888888888999988887653
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.02 Score=53.27 Aligned_cols=103 Identities=12% Similarity=0.056 Sum_probs=71.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHH-HHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKK-NIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~-N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++..++|+|||.|-+....+.. ++++++.|+ +.-+..... ++..+ +. .+..+ ...|- ...++.+..||
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~----~k~~~-~~~~~--~~~~fedn~fd 180 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY-LD----NKCNF-VVADF--GKMPFEDNTFD 180 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH-hh----hhcce-ehhhh--hcCCCCccccC
Confidence 45668999999999998888875 468999999 443332222 22222 11 11222 22221 12234567899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
.+-+.|+.-+......+++.+.+.++|||.....
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999999999999999999999999987543
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.2 Score=44.48 Aligned_cols=103 Identities=13% Similarity=0.054 Sum_probs=65.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+|||-|.|+|-++.++++-- .+++-.|+ ....+.+++-.+..++. +++.+..-|....-- ......
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~----~~vt~~hrDVc~~GF-~~ks~~ 177 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG----DNVTVTHRDVCGSGF-LIKSLK 177 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC----cceEEEEeecccCCc-cccccc
Confidence 3579999999999999999999843 36999999 66778888888888865 677777655432110 011233
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|.|. -|+ ......+..+...++.+|.-+++.
T Consensus 178 aDaVF-LDl----PaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 178 ADAVF-LDL----PAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred cceEE-EcC----CChhhhhhhhHHHhhhcCceEEec
Confidence 45322 233 233334444455777766544443
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.028 Score=51.44 Aligned_cols=94 Identities=14% Similarity=0.037 Sum_probs=65.0
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec--hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL--PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~--~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
...+|+|.|.|.+.-.+...-++|-+++. +.+++.+. +.. -++. ... ++.+.. -|+-|+|+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~-~~~-~gV~--------~v~---gdmfq~---~P~~daI~m 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAP-YLA-PGVE--------HVA---GDMFQD---TPKGDAIWM 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhh-hhc-CCcc--------eec---cccccc---CCCcCeEEE
Confidence 68999999999765554445556777777 44444443 332 2221 111 333332 256789999
Q ss_pred ccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 202 SDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 202 ~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
..+++++ ++..++++.+++.|+|+|.+++...
T Consensus 243 kWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 243 KWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9999995 5588999999999999999988765
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.00069 Score=51.30 Aligned_cols=98 Identities=17% Similarity=0.013 Sum_probs=35.1
Q ss_pred EEECCCcCHHHHHHHH---cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 127 VELGSGCGLVGCIAAL---LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 127 LELGcGtG~~~i~~a~---~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
||+|+..|..++.+++ .. .+++++|. +. .+..++++++.+.. .++.+..-+-.+... .+...+||+|.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~----~~~~~~~g~s~~~l~-~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS----DRVEFIQGDSPDFLP-SLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG-----BTEEEEES-THHHHH-HHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC----CeEEEEEcCcHHHHH-HcCCCCEEEEE
Confidence 7999999987776654 22 26999999 54 44455555544443 356666533211111 12236788766
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
. |.-+..+....-++.+..+++|+|++++-
T Consensus 75 i-Dg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 75 I-DGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp E-ES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred E-CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3 44444455666777777888999987763
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.0071 Score=56.50 Aligned_cols=83 Identities=23% Similarity=0.293 Sum_probs=62.8
Q ss_pred CcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCC
Q 023543 94 VTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDL 172 (281)
Q Consensus 94 ~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (281)
.+|-+.|.+ .+..+.-.- ......|..|.|+-||.|-.++.+++.++.|++-|. +++++.++.|+..|.+.
T Consensus 226 DfskVYWns-RL~~Eherl----sg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~--- 297 (495)
T KOG2078|consen 226 DFSKVYWNS-RLSHEHERL----SGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVD--- 297 (495)
T ss_pred ecceEEeec-cchhHHHHH----hhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccc---
Confidence 357778984 333332111 112346889999999999999999999999999999 99999999999999887
Q ss_pred CCceEEEEEecC
Q 023543 173 RGSAVVTELTWG 184 (281)
Q Consensus 173 ~~~i~~~~l~w~ 184 (281)
..++.+.++|-.
T Consensus 298 ~~~iei~Nmda~ 309 (495)
T KOG2078|consen 298 PSAIEIFNMDAK 309 (495)
T ss_pred hhheeeecccHH
Confidence 234777776643
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.12 Score=50.23 Aligned_cols=105 Identities=18% Similarity=0.106 Sum_probs=62.4
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-----CCC---
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-----PDQ--- 189 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-----~~~--- 189 (281)
.++.+|+=+|||. |+.++.+|+ +|++|+++|. ++.++.++. .+... -.+....-++... ...
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes----lGA~~---v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES----MGAEF---LELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCeE---EEeccccccccccchhhhcchhHH
Confidence 5688999999996 888887776 7999999999 777777764 22110 0000000000000 000
Q ss_pred -----CcCC--CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 190 -----DLIQ--PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 190 -----~~~~--~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.+.+ ..+|+||.+-..-.......+.+...+.++|||.++...
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 0111 358999887655222222233488888999999876554
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.042 Score=47.62 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=51.8
Q ss_pred CCCeEEEECCCcCHHH-H-HHHHcCCEEEEEec-hhHHHHHHHHHHHh-hcCCCCCCceEEEEEecCCCCCCC-----cC
Q 023543 122 HGKKIVELGSGCGLVG-C-IAALLGAQVILTDL-PDRLRLLKKNIENN-LRHGDLRGSAVVTELTWGDDPDQD-----LI 192 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~-i-~~a~~g~~V~~tD~-~~~l~~~~~N~~~n-~~~~~~~~~i~~~~l~w~~~~~~~-----~~ 192 (281)
++-++||+|.|.-.+- + -....|.+.+++|+ +.+++.|+.++..| ++. ..++...- .+.+.. -.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~----~~I~lr~q---k~~~~if~giig~ 150 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE----RAIRLRRQ---KDSDAIFNGIIGK 150 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh----hheeEEec---cCccccccccccc
Confidence 4568899987754221 1 12235778999999 78899999999999 444 23433321 111111 13
Q ss_pred CCCCcEEEEccccCC
Q 023543 193 QPLPDYVLGSDVIYS 207 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~ 207 (281)
++.||..+|+..+|.
T Consensus 151 nE~yd~tlCNPPFh~ 165 (292)
T COG3129 151 NERYDATLCNPPFHD 165 (292)
T ss_pred cceeeeEecCCCcch
Confidence 678999999888876
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.021 Score=43.50 Aligned_cols=48 Identities=21% Similarity=0.113 Sum_probs=33.9
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL 152 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~ 152 (281)
.+|.||...........+....+|||||.|++--.+.+-|.+=.++|.
T Consensus 41 aIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 41 AIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred HHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 355666553221111123457999999999999999999999899998
|
; GO: 0008168 methyltransferase activity |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.019 Score=52.61 Aligned_cols=106 Identities=13% Similarity=0.188 Sum_probs=64.9
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC---EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-C---Cc-
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA---QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-Q---DL- 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~---~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~---~~- 191 (281)
.+..+++||+|.|.|....++-..-+ .++.++.+.+++..-..+..|-.. ...+|....- . .+
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t---------~~td~r~s~vt~dRl~lp 181 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST---------EKTDWRASDVTEDRLSLP 181 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc---------ccCCCCCCccchhccCCC
Confidence 57888999999999864333332222 366666655666555566665332 2244432110 0 11
Q ss_pred CCCCCcEEEEccccCC---CCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 192 IQPLPDYVLGSDVIYS---EGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~---~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
....|++++..|-+.. +..+...++.+..++.|||.++++...
T Consensus 182 ~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 182 AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 1235788887776654 344566888889999999998887653
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.045 Score=46.56 Aligned_cols=54 Identities=24% Similarity=0.218 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHH
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKK 161 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~ 161 (281)
-+.|.+.+.... ..+|..|||.-||+|..++++.++|.+.+++|+ ++..++|++
T Consensus 177 P~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 456666666542 256899999999999999999999999999999 777888764
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.081 Score=50.71 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=61.7
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
.+|+|..+|.| |.++|.....|..... +..-...-.-+-..|+- -.-.||.+.++. -...||+|-+.
T Consensus 367 RNVMDMnAg~G--GFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLI--------G~yhDWCE~fsT--YPRTYDLlHA~ 434 (506)
T PF03141_consen 367 RNVMDMNAGYG--GFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLI--------GVYHDWCEAFST--YPRTYDLLHAD 434 (506)
T ss_pred eeeeeeccccc--HHHHHhccCCceEEEecccCCCCcchhhhhcccc--------hhccchhhccCC--CCcchhheehh
Confidence 48999999999 5555554443444333 22111111122223332 134588877764 34679999988
Q ss_pred cccCC---CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 203 DVIYS---EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 203 d~iy~---~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.++-. .-.+..++-.+.|+|+|+|.++|-+.
T Consensus 435 ~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 77543 45688999999999999999887543
|
; GO: 0008168 methyltransferase activity |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.075 Score=47.25 Aligned_cols=104 Identities=17% Similarity=0.131 Sum_probs=74.4
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+.|+.|+=+| ---+.|++++.-| .+|..+|+ +..++...+-+++.+.. ++....+|..++.+..+ ..+|
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-----~ie~~~~Dlr~plpe~~-~~kF 222 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-----NIEAFVFDLRNPLPEDL-KRKF 222 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-----chhheeehhcccChHHH-HhhC
Confidence 46889999999 5678888888744 47999999 55688888888888775 67788888766655433 4689
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCC---cEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQ---TTIFLA 231 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~---g~~~l~ 231 (281)
|+. ..|..+....+..++..=-..|+.. |++.++
T Consensus 223 Dvf-iTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 223 DVF-ITDPPETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred Cee-ecCchhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 954 4777766666666666555555544 444444
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.55 Score=39.56 Aligned_cols=120 Identities=14% Similarity=0.006 Sum_probs=66.2
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcC-C--EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-----CCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLG-A--QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-----DQDL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g-~--~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-----~~~~ 191 (281)
.-++.+|||+||-.|..+-.+-++. . .|.++|+-.... -.|.. .+..-|..+.. -..+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p-------~~Ga~-------~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP-------PEGAT-------IIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC-------CCCcc-------cccccccCCHHHHHHHHHhC
Confidence 3578899999999999998887743 3 499999822100 00100 01111221111 0124
Q ss_pred CCCCCcEEEEccccCC-----CCcHHHHHHHHHH-------hhCCCcEEEEEEeeeChhHHHHHHHHHhcCCe-EEEE
Q 023543 192 IQPLPDYVLGSDVIYS-----EGAVGDLLDTLLQ-------LCGTQTTIFLAGELRNDSVLEYFLEAAMKDFV-IGRV 256 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~-----~~~~~~ll~~l~~-------ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~-v~~i 256 (281)
++.+.|+|+ +|...+ ..++..+++.+.. ++.|+|.++.-.-...+ ...|...+...|+ |..+
T Consensus 133 p~r~VdvVl-SDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e--~~~l~r~l~~~f~~Vk~v 207 (232)
T KOG4589|consen 133 PNRPVDVVL-SDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE--EALLQRRLQAVFTNVKKV 207 (232)
T ss_pred CCCcccEEE-eccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc--hHHHHHHHHHHhhhcEee
Confidence 667889777 455544 2345555555543 34789987544332222 2446666666675 4444
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.23 Score=45.00 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=66.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEechh-HH--HHHHHHHHHhhcCCC-----------CCCceEEEEEe-----
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDLPD-RL--RLLKKNIENNLRHGD-----------LRGSAVVTELT----- 182 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~-~l--~~~~~N~~~n~~~~~-----------~~~~i~~~~l~----- 182 (281)
..-+||==|||.|.++.-+|..|.++-+-+.+. |+ ..--.|.-.+..... ....-++..+.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 345899999999999999999999988887743 42 222223322211100 00000000000
Q ss_pred -------------cCCCCCCCcC----CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 183 -------------WGDDPDQDLI----QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 183 -------------w~~~~~~~~~----~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|..++-.... ...||+|+-|-.|=....+-..++++.++|+|||+.+-.++.
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPL 298 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPL 298 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccce
Confidence 1011110111 135899998855544667888999999999999987655443
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.087 Score=42.57 Aligned_cols=97 Identities=23% Similarity=0.149 Sum_probs=63.7
Q ss_pred CCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 123 GKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
.++.+|||+|-|.+-+.+++.|. +-+++++ +-.+.+++..+-+.+.. .+..|..-| .....+-+-.+-+|.
T Consensus 73 ~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~----k~trf~Rkd---lwK~dl~dy~~vviF 145 (199)
T KOG4058|consen 73 KGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA----KSTRFRRKD---LWKVDLRDYRNVVIF 145 (199)
T ss_pred CCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc----cchhhhhhh---hhhccccccceEEEe
Confidence 35899999999999999999995 5899999 77788888888887765 344444322 111122122233333
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++ ++.++.|...+..-|..++.++-+
T Consensus 146 ga-----es~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 146 GA-----ESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred eh-----HHHHhhhHHHHHhhCcCCCeEEEE
Confidence 33 333566777777667777776443
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.14 Score=47.30 Aligned_cols=100 Identities=28% Similarity=0.306 Sum_probs=62.0
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC-CC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ-PL 195 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~-~~ 195 (281)
..+.+|+=+|||. |++++.+++ .|+ +|+++|. ++.+++|++-...-.... .... +.... -....+ ..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~---~~~~----~~~~~-~~~~t~g~g 238 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVN---PSED----DAGAE-ILELTGGRG 238 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeec---Cccc----cHHHH-HHHHhCCCC
Confidence 3455999999997 988877776 565 6999999 788999886221110000 0000 00000 001122 36
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+|+++-+-- .+..+..+.++++++|.+.+....
T Consensus 239 ~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVG------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCC------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 898886554 366888888999999987766544
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.072 Score=48.73 Aligned_cols=109 Identities=20% Similarity=0.071 Sum_probs=69.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEech-hHHH-------HHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDLP-DRLR-------LLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~-~~l~-------~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~ 192 (281)
.+|+-|.|=-.|||-+-+.+|..|+.|+|+|++ .++. ..+.|.++.+... .-..+...|..+ .....
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~---~fldvl~~D~sn--~~~rs 281 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS---QFLDVLTADFSN--PPLRS 281 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcc---hhhheeeecccC--cchhh
Confidence 578999999999998888899999999999995 4454 3455666655431 122333333322 12234
Q ss_pred CCCCcEEEEccccCCC----------------------------------CcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 193 QPLPDYVLGSDVIYSE----------------------------------GAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~----------------------------------~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|..||.|| ||..|.. ..+..++....+.|..||++.+-.+.+
T Consensus 282 n~~fDaIv-cDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 282 NLKFDAIV-CDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred cceeeEEE-eCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 56788766 4444431 114556677777788888876655443
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.099 Score=46.97 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=41.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIEN 165 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~ 165 (281)
.+|..|||--||+|..++++.++|-+.+|+|+ ++-++.+++.+..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999 7788988888754
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.15 Score=43.38 Aligned_cols=111 Identities=11% Similarity=0.032 Sum_probs=60.0
Q ss_pred CCeEEEECCCcCHHHHHHHHcCCE--EEEEec-hhHHHHHHHHHHHhhcCCC--CCCceEEEEEecCCCCCCCcCCC--C
Q 023543 123 GKKIVELGSGCGLVGCIAALLGAQ--VILTDL-PDRLRLLKKNIENNLRHGD--LRGSAVVTELTWGDDPDQDLIQP--L 195 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g~~--V~~tD~-~~~l~~~~~N~~~n~~~~~--~~~~i~~~~l~w~~~~~~~~~~~--~ 195 (281)
.-.+.|||||.|-+-+.++.+-.. ++|.++ ..+-+..+..|........ .-.++.+....--.-.+..+... .
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 346899999999666666665543 899999 7788888888776542211 11233333221100000000000 0
Q ss_pred CcEEEEccccCCCC------cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 196 PDYVLGSDVIYSEG------AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 196 fD~Iia~d~iy~~~------~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
-++.+-.|.-+... .-..++....-+|+++|.+|....
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 13333333322211 124577777888999999886643
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.14 Score=47.98 Aligned_cols=90 Identities=13% Similarity=-0.019 Sum_probs=47.6
Q ss_pred CCeEEEECCCcCHHHHHHHH--------c---------CCEEEEEechhH-HHHHHHHHH---Hh-----h-cCCCCCCc
Q 023543 123 GKKIVELGSGCGLVGCIAAL--------L---------GAQVILTDLPDR-LRLLKKNIE---NN-----L-RHGDLRGS 175 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~--------~---------g~~V~~tD~~~~-l~~~~~N~~---~n-----~-~~~~~~~~ 175 (281)
.-+|+|+|||+|..++.+.. . ..+|...|++.- ...+=+++. .. . +.. ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~-~~~~ 142 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAA-SGHR 142 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccc-cCCC
Confidence 55899999999977765421 0 136899999421 111111111 10 0 000 0011
Q ss_pred eEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHH
Q 023543 176 AVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGD 213 (281)
Q Consensus 176 i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ 213 (281)
.-+...--|......++..+.+++.++-.+||-+..+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~ 180 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPE 180 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCch
Confidence 11222222333344566778899999999888555443
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.28 Score=45.13 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=57.6
Q ss_pred cCCCeEEEECCC-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSG-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcG-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+|++|+=.|+| .|..++-+|+ +|++|+++|. ++-++.+++--.. ...++.+.....-....||
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------------~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------------HVINSSDSDALEAVKEIAD 231 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------------EEEEcCCchhhHHhHhhCc
Confidence 568999999998 2456776776 8999999999 6777777743111 1222221111000112388
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+|+..-. +..+....++|+++|.+.+....
T Consensus 232 ~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 8775533 44555666778888887766543
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.23 Score=43.20 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=40.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHh
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENN 166 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n 166 (281)
.+|..|||--||+|..++++.++|.+++++|+ ++-.+.+.+.++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999 77788887777654
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.23 Score=47.51 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=65.1
Q ss_pred eEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHH-HHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 125 KIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRL-LKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~-~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
++|.+|||.--+..-+-+-|.+ |+.+|+ +-++.. ..+|+..+. -..+... +.....+.++.||+||.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~-------~~~~~~~---d~~~l~fedESFdiVId 120 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERP-------EMQMVEM---DMDQLVFEDESFDIVID 120 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCc-------ceEEEEe---cchhccCCCcceeEEEe
Confidence 8999999999888888888875 999999 445543 445553331 2333332 23344567789999997
Q ss_pred ccc----------cCCCCcHHHHHHHHHHhhCCCcEEEE
Q 023543 202 SDV----------IYSEGAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 202 ~d~----------iy~~~~~~~ll~~l~~ll~~~g~~~l 230 (281)
-.. +++.......+..+.++++++|+.+.
T Consensus 121 kGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 121 KGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 333 33344566778888999999998543
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.054 Score=48.27 Aligned_cols=112 Identities=18% Similarity=0.079 Sum_probs=69.5
Q ss_pred cCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCC
Q 023543 95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLR 173 (281)
Q Consensus 95 tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~ 173 (281)
|-++.||-...+.+.. ..|..++|.|||.|-.... .....+++.|+ ...+..+++. ++
T Consensus 28 tr~~~Wp~v~qfl~~~----------~~gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~~ak~~---~~------ 86 (293)
T KOG1331|consen 28 TRAAPWPMVRQFLDSQ----------PTGSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLGGAKRS---GG------ 86 (293)
T ss_pred cccCccHHHHHHHhcc----------CCcceeeecccCCcccCcC--CCcceeeecchhhhhccccccC---CC------
Confidence 4466799765433332 3478999999999932111 12335899998 5555554421 11
Q ss_pred CceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCc---HHHHHHHHHHhhCCCcEEEEEE
Q 023543 174 GSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA---VGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 174 ~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~---~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
. .+.. .+.......+++||.+++..++++... -..+++.+.+.++|||..++..
T Consensus 87 -~-~~~~---ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 87 -D-NVCR---ADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred -c-eeeh---hhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 0 0111 122333345678999999999998543 5678888888999999865543
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.52 Score=43.10 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=54.7
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|||. |..++.+|+ .|+ +|+++|. ++.++.+++ .+.. ..+.....++.+.. .....+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~~~---~~~g~~ 236 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD----KLVNPQNDDLDHYK---AEKGYF 236 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc----EEecCCcccHHHHh---ccCCCC
Confidence 4688999899864 555555555 677 6999998 677777653 2221 00000000111000 012358
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+-+--- ...+....++++++|.+++...
T Consensus 237 D~vid~~G~------~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFEVSGH------PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CEEEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 887754221 3456677788899998876653
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.3 Score=45.02 Aligned_cols=110 Identities=16% Similarity=0.096 Sum_probs=54.6
Q ss_pred CCeEEEECCCcCHHHHHHHH------------cC------CEEEEEech--hH---HHHHHHHHHHhhcCCCCCCceEEE
Q 023543 123 GKKIVELGSGCGLVGCIAAL------------LG------AQVILTDLP--DR---LRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~------------~g------~~V~~tD~~--~~---l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
.-+|+|+||.+|..++.+.. .+ .+|+..|+| +- ...+-.+....... .++-+.
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~----~~~f~~ 92 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKF----RNYFVS 92 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHT----TSEEEE
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCC----ceEEEE
Confidence 34899999999988776532 12 269999994 32 23333332221111 223222
Q ss_pred EEecCCCCCCCcCCCCCcEEEEccccCCCC---------------------------------------cHHHHHHHHHH
Q 023543 180 ELTWGDDPDQDLIQPLPDYVLGSDVIYSEG---------------------------------------AVGDLLDTLLQ 220 (281)
Q Consensus 180 ~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~---------------------------------------~~~~ll~~l~~ 220 (281)
.. -+......++..+.|++.++-.+||-+ ++..+++.-++
T Consensus 93 gv-pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334)
T PF03492_consen 93 GV-PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334)
T ss_dssp EE-ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ec-CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22 133334445566677777766666511 12334444445
Q ss_pred hhCCCcEEEEEEeeeCh
Q 023543 221 LCGTQTTIFLAGELRND 237 (281)
Q Consensus 221 ll~~~g~~~l~~~~r~~ 237 (281)
=|+|||++++....|+.
T Consensus 172 ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 172 ELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HEEEEEEEEEEEEE-ST
T ss_pred eeccCcEEEEEEeeccc
Confidence 56799999888877654
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.065 Score=48.10 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=52.3
Q ss_pred eecchHHHHHHHHhh--hhccCccccCCCeEEEECCCcCHHHH-HHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcC
Q 023543 98 VMWDSGVVLGKFLEH--AVDSGMLLLHGKKIVELGSGCGLVGC-IAALLGAQ-VILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 98 ~~W~~s~~la~~l~~--~~~~~~~~~~~~~VLELGcGtG~~~i-~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
..|+.+..+-.+=.. ........-.+..|+||=+|.|...+ .+-..||+ |.+.|. |.+++.+++|++.|++.
T Consensus 168 ~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~ 244 (351)
T KOG1227|consen 168 QIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM 244 (351)
T ss_pred EEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH
Confidence 468887766554211 00000011346789999999999998 66678886 999999 99999999999999765
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.29 Score=42.05 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=32.7
Q ss_pred CeEEEECCCcCHHHHHHHHc-C---CEEEEEec-hhHHHHHHHHHHHh
Q 023543 124 KKIVELGSGCGLVGCIAALL-G---AQVILTDL-PDRLRLLKKNIENN 166 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~-g---~~V~~tD~-~~~l~~~~~N~~~n 166 (281)
-++=|=.||+|.+--.+..+ + ..|++.|+ ++++++|++|+...
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 48999999999665555442 2 36999999 88999999998653
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.47 Score=42.19 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=61.1
Q ss_pred CeEEEECCCc---CHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC---------
Q 023543 124 KKIVELGSGC---GLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD--------- 188 (281)
Q Consensus 124 ~~VLELGcGt---G~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~--------- 188 (281)
...||||||. |.+--.+.. ..++|+-+|. +-++..++.-+..|.. +...+...|..+...
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-----g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-----GRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-----SEEEEEE--TT-HHHHHCSHHHHC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-----ccEEEEeCCCCCHHHHhcCHHHHh
Confidence 4899999994 333333222 5779999999 7778888877666532 235666666543211
Q ss_pred CCcCCCCCcEEEEccccCC---CCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 189 QDLIQPLPDYVLGSDVIYS---EGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~---~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
..-.+.|.= ++...++++ ......+++.+...|.||+.+.+++...+
T Consensus 145 ~lD~~rPVa-vll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 145 LLDFDRPVA-VLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp C--TTS--E-EEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred cCCCCCCee-eeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 011234443 455666665 35789999999999999999999987654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.12 E-value=2.4 Score=37.27 Aligned_cols=125 Identities=14% Similarity=0.174 Sum_probs=65.3
Q ss_pred CcCceecch--HHHHHHHHhhhhccCccccCCCeEEEECCCcCHH-HHHHHHcCCE--EEEEec-hhHHHHHHHHHHHhh
Q 023543 94 VTGSVMWDS--GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLV-GCIAALLGAQ--VILTDL-PDRLRLLKKNIENNL 167 (281)
Q Consensus 94 ~tG~~~W~~--s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~-~i~~a~~g~~--V~~tD~-~~~l~~~~~N~~~n~ 167 (281)
..-+++|.. +.+.|..+-. ++ +.+..+|.+||=||+++|.. +-..-.-|.+ |++++. ...=+.+. |+...-
T Consensus 128 kvEyRVWnPfrSKLAA~I~gG-vd-nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~-nmAkkR 204 (317)
T KOG1596|consen 128 KVEYRVWNPFRSKLAAGILGG-VD-NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLI-NMAKKR 204 (317)
T ss_pred cEEEEEeChHHHHHHHHhhcC-cc-ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHH-HHhhcc
Confidence 456789985 3333333322 22 23456899999999999954 3333334654 899998 43311111 111110
Q ss_pred cCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE-EccccCC----CCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 168 RHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL-GSDVIYS----EGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 168 ~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii-a~d~iy~----~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
.++....-| .- ...+|.+.+ +-|+||. +.....+.-.....|+++|-++++...
T Consensus 205 ------tNiiPIiED---Ar----hP~KYRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 205 ------TNIIPIIED---AR----HPAKYRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred ------CCceeeecc---CC----CchheeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 122222211 11 113443333 2455544 333444555566789999998877543
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.78 Score=40.70 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=74.9
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTE 180 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~ 180 (281)
.-.+-++|+.+.+.... .-....|+.||||.=.-+.-+... +..++=+|.+++++.=++-+..++... ..+..+..
T Consensus 62 ~~~~Rtr~~D~~i~~~~-~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~--~~~~~~v~ 138 (260)
T TIGR00027 62 FIAVRTRFFDDFLLAAV-AAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEP--PAHRRAVP 138 (260)
T ss_pred HHHHHHHHHHHHHHHHH-hcCCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCC--CCceEEec
Confidence 34444556555332110 011347999999975444443322 456888888998877777776654321 23455555
Q ss_pred EecC----CCCCC-CcCCCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 181 LTWG----DDPDQ-DLIQPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 181 l~w~----~~~~~-~~~~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.|.. +.... .+.....-++++-.++++ ++....+++.+.++..||+.+++-..
T Consensus 139 ~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 139 VDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred cCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 5433 11110 111123356677666655 56788999999999989888877654
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.81 Score=41.69 Aligned_cols=89 Identities=20% Similarity=0.096 Sum_probs=54.9
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+|.+||=.|+|. |...+.+|+ .|++|++++. ++.++++++ .+.. . +.... + . ....+|
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~-----~--vi~~~--~-~----~~~~~d 225 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA-----S--AGGAY--D-T----PPEPLD 225 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc-----e--ecccc--c-c----Ccccce
Confidence 4688999999853 444444444 6889999998 666666554 3322 0 11100 0 0 123578
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+++-++.. ...+....+.++++|++++...
T Consensus 226 ~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 226 AAILFAPA------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEEECCCc------HHHHHHHHHhhCCCcEEEEEec
Confidence 87766654 3467777788999999877654
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.69 Score=41.71 Aligned_cols=86 Identities=17% Similarity=0.062 Sum_probs=52.2
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++++||=+|||. |+.++.+|+ .|++ |+++|. ++.++.+... .. + +-.+. ....+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~-------i-----~~~~~-----~~~g~ 201 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV-------L-----DPEKD-----PRRDY 201 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc-------c-----Chhhc-----cCCCC
Confidence 3577899888874 666665555 6886 777888 5555554421 10 0 00000 12468
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+-+--- +..++...++++++|++++...
T Consensus 202 Dvvid~~G~------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 202 RAIYDASGD------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CEEEECCCC------HHHHHHHHHhhhcCcEEEEEee
Confidence 887754332 4566777788999998876553
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.32 Score=45.39 Aligned_cols=104 Identities=23% Similarity=0.255 Sum_probs=59.2
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE-ecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL-TWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l-~w~~~~~~~~~~~~ 195 (281)
.++.+||.+|||. |...+.+|+ .|. +|+++|. ++.++.+++.. +.. .+..... +|.........+..
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~-----vi~~~~~~~~~~~l~~~~~~~~ 254 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAE-----TINFEEVDDVVEALRELTGGRG 254 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcE-----EEcCCcchHHHHHHHHHcCCCC
Confidence 4688999999886 766666665 576 5999998 77777776531 100 0111111 01110001112236
Q ss_pred CcEEEEcccc-------C--------CCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVI-------Y--------SEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~i-------y--------~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+-+--- | ...+-...+..+.++++++|.+++..
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 8988764210 0 11122456777888999999887664
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.47 Score=41.69 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=64.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
...+|+|||||.=-+++..... ++.+++.|+ ..+++.+..-+...+.. ..+...|. .. .....+.|+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~------~~~~v~Dl---~~-~~~~~~~Dl 174 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP------HDARVRDL---LS-DPPKEPADL 174 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C------EEEEEE-T---TT-SHTTSEESE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC------cceeEeee---ec-cCCCCCcch
Confidence 3679999999988777765543 468999999 78899988877766543 33333332 11 123456788
Q ss_pred EEEccccCCCCcH--HHHHHHHHHhhCCCcEEEEEEeeeCh--------hHHHHHHHHHhc--CCeEEEEe
Q 023543 199 VLGSDVIYSEGAV--GDLLDTLLQLCGTQTTIFLAGELRND--------SVLEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 199 Iia~d~iy~~~~~--~~ll~~l~~ll~~~g~~~l~~~~r~~--------~~~~~fl~~~~~--~f~v~~i~ 257 (281)
.+.-=++.--+.. ...++.+..+ ..-.++++.+.|+- .....+++.+.. ++.+.++.
T Consensus 175 aLllK~lp~le~q~~g~g~~ll~~~--~~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~ 243 (251)
T PF07091_consen 175 ALLLKTLPCLERQRRGAGLELLDAL--RSPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLT 243 (251)
T ss_dssp EEEET-HHHHHHHSTTHHHHHHHHS--CESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEE
T ss_pred hhHHHHHHHHHHHhcchHHHHHHHh--CCCeEEEeccccccccCccccccCHHHHHHHhcccCCceeeeee
Confidence 8865443210000 0111111111 23457778876541 223445555543 56665554
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.57 Score=36.18 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=56.5
Q ss_pred CCCeEEEECCCcC-HHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 122 HGKKIVELGSGCG-LVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 122 ~~~~VLELGcGtG-~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
..++|+|+|.|-= -++-.+++.|..|++||+++. ++. . .+.+..-| +.+|..-+--
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~------~a~-~--------g~~~v~DD--------itnP~~~iY~ 69 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK------TAP-E--------GLRFVVDD--------ITNPNISIYE 69 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc------cCc-c--------cceEEEcc--------CCCccHHHhh
Confidence 4459999998863 467778889999999999433 111 1 23333322 2445555556
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcE-EEEE
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTT-IFLA 231 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~-~~l~ 231 (281)
+++.+|...-.+.+.+.+.++.+.-|. +++.
T Consensus 70 ~A~lIYSiRpppEl~~~ildva~aVga~l~I~ 101 (129)
T COG1255 70 GADLIYSIRPPPELQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred CccceeecCCCHHHHHHHHHHHHhhCCCEEEE
Confidence 788888877777788888777765443 4443
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.78 Score=42.09 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=53.1
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec----hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CCCcCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL----PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQDLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~----~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~~~~~ 193 (281)
.+|.+||=+|||. |.+++.+|+ .|++|++++. ++.++.+++ .+.. . .++.+.. ......
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~--------~--v~~~~~~~~~~~~~ 236 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT--------Y--VNSSKTPVAEVKLV 236 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE--------E--ecCCccchhhhhhc
Confidence 4688999999864 555555554 6889999986 334444432 2221 1 1111100 000112
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
..+|+|+-+--- ...+....++++++|.+++...
T Consensus 237 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 237 GEFDLIIEATGV------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CCCCEEEECcCC------HHHHHHHHHHccCCcEEEEEec
Confidence 468877754321 3466777788999998776553
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.48 Score=41.36 Aligned_cols=81 Identities=17% Similarity=0.124 Sum_probs=40.6
Q ss_pred eEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCC----CCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 125 KIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGD----LRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~----~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
+|||.=||.|.-++.+|..|++|++++. +-+-.+++.-++....... ...++++..-+-.+... ....+||+|
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~--~~~~s~DVV 155 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR--QPDNSFDVV 155 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC--CHSS--SEE
T ss_pred EEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh--hcCCCCCEE
Confidence 8999999999999999999999999999 4433333332222211100 01356666644322222 345789977
Q ss_pred EEccccCCC
Q 023543 200 LGSDVIYSE 208 (281)
Q Consensus 200 ia~d~iy~~ 208 (281)
.. |.+|..
T Consensus 156 Y~-DPMFp~ 163 (234)
T PF04445_consen 156 YF-DPMFPE 163 (234)
T ss_dssp EE---S---
T ss_pred EE-CCCCCC
Confidence 65 777764
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=4 Score=38.29 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=73.8
Q ss_pred ceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCce
Q 023543 97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 97 ~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
.+-|+++- +||.+++... ... .+||=|+=..|.+++.++..+.. ..+|---+-..++.|+.+|++.. +.+
T Consensus 25 l~awdaad---e~ll~~~~~~--~~~-~~~~i~nd~fGal~~~l~~~~~~-~~~ds~~~~~~~~~n~~~n~~~~---~~~ 94 (378)
T PRK15001 25 LQAWEAAD---EYLLQQLDDT--EIR-GPVLILNDAFGALSCALAEHKPY-SIGDSYISELATRENLRLNGIDE---SSV 94 (378)
T ss_pred ccccccHH---HHHHHHHhhc--ccC-CCEEEEcCchhHHHHHHHhCCCC-eeehHHHHHHHHHHHHHHcCCCc---ccc
Confidence 56699986 4554443211 122 38999999999999988865553 33555334556788999998751 123
Q ss_pred EEEEEecCCCCCCCcCCCCCcEEEEccccCCC---CcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 177 VVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE---GAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~---~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
..... . + . ....+|+|+. |.+ ..++.++..+..++.+++.++.....+.
T Consensus 95 ~~~~~--~---~-~-~~~~~d~vl~----~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~k~ 146 (378)
T PRK15001 95 KFLDS--T---A-D-YPQQPGVVLI----KVPKTLALLEQQLRALRKVVTSDTRIIAGAKARD 146 (378)
T ss_pred eeecc--c---c-c-ccCCCCEEEE----EeCCCHHHHHHHHHHHHhhCCCCCEEEEEEecCC
Confidence 22221 1 1 1 1245897763 333 3467778888889999999876665544
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.57 Score=42.16 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=54.4
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..+.+||-.|||. |...+.+|+ .|.+|++++. ++..+.+++ .+.. ..+......+.... .......+|
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~~~~~-~~~~~~~~D 234 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD----EVLNSLDDSPKDKK-AAGLGGGFD 234 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC----EEEcCCCcCHHHHH-HHhcCCCce
Confidence 4577888888763 555555555 7889999988 666665543 2221 00000000000000 012235689
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+++.+--. ...++.+.+.|+++|.++...
T Consensus 235 ~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 235 VIFDFVGT------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEEECCCC------HHHHHHHHHHhhcCCEEEEEC
Confidence 88754221 456777788999999887653
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.49 Score=37.16 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=29.5
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCc-CHHHHHHHHcCCEEEEEec-hh
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGC-GLVGCIAALLGAQVILTDL-PD 154 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGt-G~~~i~~a~~g~~V~~tD~-~~ 154 (281)
.+|+|+.+. ...++|+|+|-|. --++..++..|..|++||+ +.
T Consensus 3 ~~a~~ia~~-------~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~ 47 (127)
T PF03686_consen 3 DFAEYIARL-------NNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR 47 (127)
T ss_dssp HHHHHHHHH-------S-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S
T ss_pred hHHHHHHHh-------CCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc
Confidence 467888754 3445999999986 3567788889999999999 55
|
; PDB: 2K4M_A. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.53 Score=43.30 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=53.3
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+||=.|||. |...+.+|+ .|++ |+++|. ++.++.+++ .+.. .-+....-+|............+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~i~~~~~~~g~ 246 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT----HTVNSSGTDPVEAIRALTGGFGA 246 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc----eEEcCCCcCHHHHHHHHhCCCCC
Confidence 4688999998764 555555555 6874 999998 666666643 2211 00111111111000001112358
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+- ++-. +..+....++++++|++++...
T Consensus 247 d~vid--~~g~----~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 247 DVVID--AVGR----PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CEEEE--CCCC----HHHHHHHHHHhccCCEEEEECC
Confidence 98874 3322 2345556678899998876543
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.26 E-value=1.1 Score=41.12 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=52.5
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH--cC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL--LG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~--~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.+|.+||=+|||. |+.++.+++ .| .+|+++|. ++.++.+++ .+. .... -++. ....
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~-------~~~~-~~~~-------~~~g 222 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE-------TYLI-DDIP-------EDLA 222 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc-------eeeh-hhhh-------hccC
Confidence 4688999999874 655555454 34 57999999 666777653 111 0000 0111 1124
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+-+-- . ...+..+....++++++|++++..
T Consensus 223 ~d~viD~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 223 VDHAFECVG--G-RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CcEEEECCC--C-CccHHHHHHHHHhCcCCcEEEEEe
Confidence 787774221 1 112456677778899999987654
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=91.12 E-value=4.2 Score=34.81 Aligned_cols=107 Identities=19% Similarity=0.103 Sum_probs=54.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHH----c--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC----C
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL----L--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD----Q 189 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~----~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~----~ 189 (281)
.+.+.|+|+|.=.|--.+..|. . ..+|+++|+ -.... +..++.+... .++++.+.+..+... .
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~----~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMS----PRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG--------TTEEEEES-SSSTHHHHTSG
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhcccc----CceEEEECCCCCHHHHHHHH
Confidence 6788999999998866665553 2 247999999 32211 1111222222 578888855432110 0
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.+...+=-+++.-|.-|....+-.-++....++++|+++++.+.
T Consensus 105 ~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 105 ELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred HhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 11112223566677777778888888889999999999887653
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.10 E-value=7.6 Score=36.10 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=73.1
Q ss_pred cCCCeEEEECCCcCHHHHHH--HHcCC----EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC----
Q 023543 121 LHGKKIVELGSGCGLVGCIA--ALLGA----QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ---- 189 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~--a~~g~----~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~---- 189 (281)
.+|.+|||+++-.|-=++.+ +.... .|++-|. +..+..++.-+..-... +..+...+-......
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-----~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-----NLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-----ceeeecccceecccccccc
Confidence 47889999999998444322 22222 6999999 66677666555332111 222222211110000
Q ss_pred --CcCCCCCcEEEE-----ccccCCC------------------CcHHHHHHHHHHhhCCCcEEEEEE----eeeChhHH
Q 023543 190 --DLIQPLPDYVLG-----SDVIYSE------------------GAVGDLLDTLLQLCGTQTTIFLAG----ELRNDSVL 240 (281)
Q Consensus 190 --~~~~~~fD~Iia-----~d~iy~~------------------~~~~~ll~~l~~ll~~~g~~~l~~----~~r~~~~~ 240 (281)
......||-|++ .|..... ...-.++..-.++|++||+++.+. +.++..+.
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV 308 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVV 308 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHH
Confidence 112246887775 3322210 112346666677899999977664 34566777
Q ss_pred HHHHHHHhcCCeEEEEe
Q 023543 241 EYFLEAAMKDFVIGRVE 257 (281)
Q Consensus 241 ~~fl~~~~~~f~v~~i~ 257 (281)
+..++.+...+.+..+.
T Consensus 309 ~~~L~~~~~~~~lv~~~ 325 (375)
T KOG2198|consen 309 QEALQKVGGAVELVDVS 325 (375)
T ss_pred HHHHHHhcCcccceeec
Confidence 77777776666654443
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.6 Score=43.21 Aligned_cols=97 Identities=24% Similarity=0.271 Sum_probs=52.9
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|+|. |...+.+|+ .|+ +|+++|. ++.++.+++ .+.. ..+.....+|.+... ......+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~----~~i~~~~~~~~~~i~-~~~~~g~ 260 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT----ATVNAGDPNAVEQVR-ELTGGGV 260 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc----eEeCCCchhHHHHHH-HHhCCCC
Confidence 4678888899763 444454554 688 6999998 666776653 2221 001111111110000 0122368
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+-+--- ...+....++++++|.+++..
T Consensus 261 d~vid~~G~------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 261 DYAFEMAGS------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CEEEECCCC------hHHHHHHHHHHhcCCEEEEEc
Confidence 888754211 345666677889999877654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.87 E-value=6.9 Score=34.51 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=92.7
Q ss_pred ceecchH---HHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCC
Q 023543 97 SVMWDSG---VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDL 172 (281)
Q Consensus 97 ~~~W~~s---~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (281)
+++|.+. ..|..|+...-. ...+++ |..=||+=.++-.+.+..-++.++++ ++=...++.|....
T Consensus 65 ~RL~~a~~lpa~l~~yl~~i~~----lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d------ 133 (279)
T COG2961 65 ARLWQAADLPAELEPYLDAVRQ----LNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGD------ 133 (279)
T ss_pred HHHHhcCCchHHHHHHHHHHHH----hCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCC------
Confidence 3566653 346667665321 123333 77788887777777777778999999 87778888777632
Q ss_pred CCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-CCcHHHHHHHHHHhhC--CCcEEEEEEeeeChhHHHHHHHHHhc
Q 023543 173 RGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS-EGAVGDLLDTLLQLCG--TQTTIFLAGELRNDSVLEYFLEAAMK 249 (281)
Q Consensus 173 ~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~-~~~~~~ll~~l~~ll~--~~g~~~l~~~~r~~~~~~~fl~~~~~ 249 (281)
.++.+...|--......++.+.=.-.|.-|.-|. ..+++.+++++.+.++ ++|+..|=++......++.|++.++.
T Consensus 134 -~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~ 212 (279)
T COG2961 134 -RRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEA 212 (279)
T ss_pred -cceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhh
Confidence 3566666541111111222222244455666666 6789999999999887 57887788888887788999988875
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=90.78 E-value=5.3 Score=32.88 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=72.2
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHH-HHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIA-ALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~-a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
+++..|++.+.+. ...+.+|+=|||=+-...+.- ...+.++++.|+.......- ++ .+.
T Consensus 10 ~T~~~l~~~l~~~------~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~-------------~~-~F~ 69 (162)
T PF10237_consen 10 ETAEFLARELLDG------ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG-------------GD-EFV 69 (162)
T ss_pred HHHHHHHHHHHHh------cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC-------------Cc-ceE
Confidence 3456667666653 235679999987654444433 11345799999954422110 12 345
Q ss_pred EEecCCCCC--CCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChh
Q 023543 180 ELTWGDDPD--QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 180 ~l~w~~~~~--~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
-+|...+.. ..+ ..+||+||+=......+.......+++.++++++.++++.......
T Consensus 70 fyD~~~p~~~~~~l-~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~ 129 (162)
T PF10237_consen 70 FYDYNEPEELPEEL-KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEMEE 129 (162)
T ss_pred ECCCCChhhhhhhc-CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHHHH
Confidence 555443322 112 4689988876666566677888899999999999988886655443
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.70 E-value=1 Score=39.86 Aligned_cols=97 Identities=26% Similarity=0.231 Sum_probs=53.7
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|+|. |..++.+|+ .|++ |+++|. ++.++.+++ .+.. ..+..... + ...........+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~----~~i~~~~~-~-~~~~~~~~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT----ALAEPEVL-A-ERQGGLQNGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc----EecCchhh-H-HHHHHHhCCCCC
Confidence 4788999998864 555554554 6876 999998 666666654 1211 00000000 0 000000112458
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+-+--- ...++...++++++|++++...
T Consensus 189 d~vid~~G~------~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 189 DVALEFSGA------TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CEEEECCCC------hHHHHHHHHHhcCCCEEEEecc
Confidence 887754221 4466677788899998876553
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.29 Score=46.84 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=70.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-CCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-PDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~~~~~~~~~ 195 (281)
.++-+|||-=|+||+=+|-.|+. |. +|++-|. +.+++..++|++.|+.. +.+....-|.... .........
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~----~ive~~~~DA~~lM~~~~~~~~~ 183 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE----DIVEPHHSDANVLMYEHPMVAKF 183 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch----hhcccccchHHHHHHhccccccc
Confidence 35568999999999999988873 33 5999999 78899999999999665 2333333221110 011112456
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
||+| --|.. .....++....+.++.||++++.+..
T Consensus 184 FDvI-DLDPy---Gs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 184 FDVI-DLDPY---GSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred cceE-ecCCC---CCccHHHHHHHHHhhcCCEEEEEecc
Confidence 8854 33332 22355788888888899998888653
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.12 Score=40.03 Aligned_cols=85 Identities=28% Similarity=0.348 Sum_probs=55.0
Q ss_pred CcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CC---CcCC-CCCcEEEEccc
Q 023543 132 GCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQ---DLIQ-PLPDYVLGSDV 204 (281)
Q Consensus 132 GtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~---~~~~-~~fD~Iia~d~ 204 (281)
|.|+.++.+|+ .|++|+++|. ++.++.+++ .+.. ..+++.+.. .. .+.+ .++|+|+-+--
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga~---------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGAD---------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTES---------EEEETTTSSHHHHHHHHTTTSSEEEEEESSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hccc---------ccccccccccccccccccccccceEEEEecC
Confidence 45777777776 7899999999 666777663 3322 223332221 00 1122 47898886644
Q ss_pred cCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 205 IYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 205 iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
. ...++....+++++|.+.+.....
T Consensus 68 ~------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 S------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp S------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred c------HHHHHHHHHHhccCCEEEEEEccC
Confidence 3 678888889999999988776443
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.75 Score=41.37 Aligned_cols=116 Identities=19% Similarity=0.187 Sum_probs=65.2
Q ss_pred eEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 125 KIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
+++||-||+|.+++.+...|.+ |.++|+ +.+.+..+.|.. + ....|..+.....+.. .+|+++++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-~-----------~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-E-----------VICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-E-----------EEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-c-----------cccccccccccccccc-cceEEEec
Confidence 6999999999999998899986 899999 788888888875 1 1111111111112222 48999985
Q ss_pred cccCCC--------------CcHHHHHHHHHHhhCCCcEEEEEEeee------ChhHHHHHHHHHhc-CCeEEEE
Q 023543 203 DVIYSE--------------GAVGDLLDTLLQLCGTQTTIFLAGELR------NDSVLEYFLEAAMK-DFVIGRV 256 (281)
Q Consensus 203 d~iy~~--------------~~~~~ll~~l~~ll~~~g~~~l~~~~r------~~~~~~~fl~~~~~-~f~v~~i 256 (281)
-..-.. ..+..+++.+.. ++|.- +++ .... ....++.++..+.+ |+.+...
T Consensus 69 pPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~-~~Pk~-~~~-ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~ 140 (335)
T PF00145_consen 69 PPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKE-LKPKY-FLL-ENVPGLLSSKNGEVFKEILEELEELGYNVQWR 140 (335)
T ss_dssp ---TTTSTTSTHHCCCCHTTSHHHHHHHHHHH-HS-SE-EEE-EEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEE
T ss_pred cCCceEeccccccccccccchhhHHHHHHHhh-ccceE-EEe-cccceeeccccccccccccccccccceeehhc
Confidence 443221 124455555543 35543 333 3322 22456777777764 7665433
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.1 Score=41.58 Aligned_cols=42 Identities=29% Similarity=0.461 Sum_probs=29.6
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHH
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKK 161 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~ 161 (281)
..+|.+||=+|||. |..++.+|+ .|+ +|+++|. ++.++.+++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 34688999999764 555555554 687 6999999 666776653
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=88.84 E-value=3 Score=40.71 Aligned_cols=97 Identities=20% Similarity=0.258 Sum_probs=56.6
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC----------C
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD----------P 187 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~----------~ 187 (281)
.++.+|+=+|||. |+.++.+++ +|++|+++|. ++.++.++. .+.. +..++..+. .
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~----lGa~--------~v~v~~~e~g~~~~gYa~~~ 229 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS----MGAE--------FLELDFKEEGGSGDGYAKVM 229 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCe--------EEeccccccccccccceeec
Confidence 4568999999985 666665554 7999999999 666665553 1211 111111000 0
Q ss_pred CCC--------cC--CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 188 DQD--------LI--QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 188 ~~~--------~~--~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
... +. -..+|+|+.+-.+-......-+.+.+.+.+|||+.++
T Consensus 230 s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 230 SEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 000 11 2468999887766443333335666677788776654
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.36 E-value=1.3 Score=38.11 Aligned_cols=94 Identities=24% Similarity=0.267 Sum_probs=54.1
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-C---CcCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-Q---DLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~---~~~~ 193 (281)
.++.+||-.|+|+ |...+.+++ .|.+|++++. ++..+.++.. +.. . .++..+... . ....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~-----~----~~~~~~~~~~~~~~~~~~ 199 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD-----H----VIDYKEEDLEEELRLTGG 199 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc-----e----eccCCcCCHHHHHHHhcC
Confidence 5688999999986 433333443 6889999999 5555555422 211 0 111111000 0 1123
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.++|+++.+-.. ...+..+.+.++++|.++....
T Consensus 200 ~~~d~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 200 GGADVVIDAVGG------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCCCEEEECCCC------HHHHHHHHHhcccCCEEEEEcc
Confidence 578998864322 2456667778889998776554
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=87.71 E-value=1.2 Score=40.91 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=36.5
Q ss_pred CCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHH
Q 023543 123 GKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIEN 165 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~ 165 (281)
..+++||-||+|-+.+.+...|.+ +.++|+ +.+++..+.|...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~ 47 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH 47 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC
Confidence 358999999999888888888987 799999 8888888877653
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.68 E-value=4 Score=36.94 Aligned_cols=99 Identities=17% Similarity=0.083 Sum_probs=57.9
Q ss_pred CeEEEECCCc--CHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGC--GLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGt--G~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
.+|+=+|||. |++|..+++.|.+|++++. ++.++..+++ +++.....+........... . -..++||+|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~--~--~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET--A--DAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC--c--ccccccCEEE
Confidence 4688899996 5677788888889999998 5555555432 22211000111111111100 1 1135899888
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.+-=-| +....++.+..++.+++.++...
T Consensus 76 v~vK~~---~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 76 LACKAY---DAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred EECCHH---hHHHHHHHHHhhCCCCCEEEEEe
Confidence 642222 35677888888999998766554
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.58 E-value=2.2 Score=39.80 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=28.2
Q ss_pred CCeEEEECCCcCHHHHHHHH-cCCEEEEEechhH
Q 023543 123 GKKIVELGSGCGLVGCIAAL-LGAQVILTDLPDR 155 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~~~~ 155 (281)
=+.|+|+|+|-|.++-.++. .|..|.++|.+..
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~ 187 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQR 187 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchH
Confidence 36999999999999988886 6788999999544
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=87.39 E-value=1.6 Score=39.51 Aligned_cols=93 Identities=26% Similarity=0.288 Sum_probs=51.0
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-CCC--Cc-C
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-PDQ--DL-I 192 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~~~--~~-~ 192 (281)
.+|.+||=+|+|. |...+.+|+ .|++ |+++|. ++.++.+++ .+.. .+ ++..+. ... .. .
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~-------~~--i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGAD-------FV--INSGQDDVQEIRELTS 228 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC-------EE--EcCCcchHHHHHHHhC
Confidence 4588999898753 444444444 6887 999998 555655542 2221 00 110010 000 01 1
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
..++|+|+-+--- ...+....++++++|.+++..
T Consensus 229 ~~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 229 GAGADVAIECSGN------TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 2468988754221 334555567788999877554
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=87.02 E-value=4.5 Score=33.91 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=50.9
Q ss_pred eEEEECCCc-CH-HHHHHHHcCCEEEEEec-hhHHHHHHHH------------HHHhhcCCCCCCceEEEEEecCCCCCC
Q 023543 125 KIVELGSGC-GL-VGCIAALLGAQVILTDL-PDRLRLLKKN------------IENNLRHGDLRGSAVVTELTWGDDPDQ 189 (281)
Q Consensus 125 ~VLELGcGt-G~-~~i~~a~~g~~V~~tD~-~~~l~~~~~N------------~~~n~~~~~~~~~i~~~~l~w~~~~~~ 189 (281)
+|-=+|.|. |+ .+..+|..|.+|+++|+ ++.++.+++- ++++.. .++..+. .++...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~----~~~l~~t-~~~~~a--- 73 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS----AGRLRAT-TDIEEA--- 73 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH----TTSEEEE-SEHHHH---
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc----cccchhh-hhhhhh---
Confidence 455567664 53 35566778999999999 6656554311 111110 1233222 121110
Q ss_pred CcCCCCCcEEEEc-cccCC------CCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 190 DLIQPLPDYVLGS-DVIYS------EGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 190 ~~~~~~fD~Iia~-d~iy~------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
-...|+++.| .+-+. .+.+...++.+...++++..+++-...-.
T Consensus 74 ---i~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvpp 124 (185)
T PF03721_consen 74 ---IKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPP 124 (185)
T ss_dssp ---HHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSST
T ss_pred ---hhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEE
Confidence 1234555543 22222 34478889999999999777666554443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=86.87 E-value=2.5 Score=38.65 Aligned_cols=40 Identities=30% Similarity=0.580 Sum_probs=29.3
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHH
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLK 160 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~ 160 (281)
.+|.+||=+|||. |...+.+|+ .|++|+++|. ++.++.++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 4688999999854 555555554 6889999998 66666664
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.82 E-value=1.4 Score=38.63 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=32.1
Q ss_pred HHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH----c------CCEEEEEec-hhHHHHHHHHHH
Q 023543 106 LGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL----L------GAQVILTDL-PDRLRLLKKNIE 164 (281)
Q Consensus 106 la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~----~------g~~V~~tD~-~~~l~~~~~N~~ 164 (281)
+|.|+.............-+|+|+|+|+|.++.-+.. . ..+++.++. +.+.+.-++++.
T Consensus 2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 5556555332211111235999999999988765443 1 237999999 455444444443
|
; PDB: 4F3N_A 1ZKD_B. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.50 E-value=2.1 Score=39.05 Aligned_cols=97 Identities=20% Similarity=0.121 Sum_probs=51.6
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++++||=.|+|. |...+.+|+ .|. .|+++|. ++.++.+++ .+.. ..+.....++............+
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~v~~~~~~~~~~i~~~~~~~~~ 236 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT----DIVDYKNGDVVEQILKLTGGKGV 236 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc----eEecCCCCCHHHHHHHHhCCCCC
Confidence 4678999998763 444444454 677 5999999 555665552 2211 00000000000000001123468
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|+|+-+-- . ...+..+.++++++|+++..
T Consensus 237 d~vld~~g--~----~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 237 DAVIIAGG--G----QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred cEEEECCC--C----HHHHHHHHHHhhcCCEEEEe
Confidence 98874322 1 34667778888999987654
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.29 E-value=11 Score=31.86 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=56.3
Q ss_pred cCCCeEEEECCCcCHHHHHHH----HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-----
Q 023543 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD----- 190 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a----~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~----- 190 (281)
.++++||=.|++. .+|..++ ..|++|++++. ++.++.+.+.+... .++.+...|+.+.....
T Consensus 3 ~~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 3 LKGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-------GNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred cCCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEECCCCCHHHHHHHHHH
Confidence 4678999999864 4455444 46889999998 55454443333221 24556666665432110
Q ss_pred -c-CCCCCcEEEEccccCCCCc-----------------HHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 -L-IQPLPDYVLGSDVIYSEGA-----------------VGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 -~-~~~~fD~Iia~d~iy~~~~-----------------~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
. .-.++|.++.+-..+.... .-.+++.+..+++++|.+++..
T Consensus 75 ~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 0 0135687776554433211 1123455555566677655543
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=86.23 E-value=2.4 Score=39.49 Aligned_cols=98 Identities=22% Similarity=0.209 Sum_probs=51.4
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE--ecCCCCCCCcCC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL--TWGDDPDQDLIQ 193 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l--~w~~~~~~~~~~ 193 (281)
..+|.+||=.|+|. |...+.+|+ .|+ .|+++|. ++..+.+++ .+.. .-+..... +|..... .+..
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~----~~i~~~~~~~~~~~~v~-~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT----DFINPNDLSEPIQQVIK-RMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----EEEcccccchHHHHHHH-HHhC
Confidence 35688999998764 555554554 687 4899997 666665542 2221 00100100 1110000 1122
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCC-cEEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQ-TTIFLAG 232 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~-g~~~l~~ 232 (281)
..+|+|+-+--- ...+....++++++ |++++..
T Consensus 262 ~g~d~vid~~G~------~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 262 GGADYSFECVGD------TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCEEEECCCC------hHHHHHHHHhhccCCCEEEEEC
Confidence 368887754221 33455566677887 8876544
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=85.51 E-value=3 Score=37.71 Aligned_cols=97 Identities=21% Similarity=0.168 Sum_probs=50.4
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||-.|+|. |...+.+|+ .|. +|++++. ++..+.+++. +.. ..+.....+|.+.......+..+
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~----~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT----DIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc----EEEcCCcchHHHHHHHHcCCCCC
Confidence 4678898887652 545555555 675 7888887 5555555432 211 00111111111111111122568
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|+++.+-- . ...+....+.++++|+++..
T Consensus 238 d~vld~~g--~----~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVIEAVG--F----EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEEEccC--C----HHHHHHHHHHhhcCCEEEEE
Confidence 98875321 1 24666667778888877644
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=85.35 E-value=1.4 Score=38.37 Aligned_cols=48 Identities=29% Similarity=0.342 Sum_probs=32.2
Q ss_pred HHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHH
Q 023543 106 LGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLR 157 (281)
Q Consensus 106 la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~ 157 (281)
|+.||....+. ...++++|+=||+|.+++.+...+.+|++-|+ +..+.
T Consensus 8 l~~~I~~~ip~----~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~ 56 (260)
T PF02086_consen 8 LAKWIIELIPK----NKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLIN 56 (260)
T ss_dssp GHHHHHHHS-S-----S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHH
T ss_pred HHHHHHHHcCC----CCCCEEEEEecchhHHHHHhcccccceeeeechHHHHH
Confidence 56677765321 16789999999999888887778889999999 55433
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.30 E-value=3.2 Score=37.77 Aligned_cols=98 Identities=23% Similarity=0.349 Sum_probs=51.5
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=+|||. |...+.+|+ .|++ |+++|. ++.++.+++ .+.. ..+.....++. ..........+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~-~~~~~~~~~~~ 229 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM----QTFNSREMSAP-QIQSVLRELRF 229 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----eEecCcccCHH-HHHHHhcCCCC
Confidence 4688999998764 555554554 6886 789988 666665532 1211 00000000000 00001122356
Q ss_pred c-EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 D-YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D-~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
| +|+-+-- ....+....++++++|.+++...
T Consensus 230 d~~v~d~~G------~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 230 DQLILETAG------VPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CeEEEECCC------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 6 5543221 14566667788899999877653
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=84.26 E-value=2.5 Score=35.17 Aligned_cols=95 Identities=25% Similarity=0.332 Sum_probs=53.8
Q ss_pred EEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcC----CCC--------CCceEEEEEecCCCCCCC
Q 023543 126 IVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH----GDL--------RGSAVVTELTWGDDPDQD 190 (281)
Q Consensus 126 VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~----~~~--------~~~i~~~~l~w~~~~~~~ 190 (281)
|-=+|+|+ | -++..++..|.+|++.|. ++.++.+++.+..+... ... ..++.+. .+...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-----~dl~~- 75 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-----TDLEE- 75 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-----SSGGG-
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-----cCHHH-
Confidence 45578886 4 456666778999999999 77888777766653110 000 0122211 11111
Q ss_pred cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 191 LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 191 ~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
. ...|+|+-+= .-+.+.-..+++.+.+++.|+..+.
T Consensus 76 -~-~~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ila 111 (180)
T PF02737_consen 76 -A-VDADLVIEAI-PEDLELKQELFAELDEICPPDTILA 111 (180)
T ss_dssp -G-CTESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEE
T ss_pred -H-hhhheehhhc-cccHHHHHHHHHHHHHHhCCCceEE
Confidence 1 1568777553 2234456789999999998888754
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=84.22 E-value=1.9 Score=39.36 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=45.9
Q ss_pred EEECCCcCHHHHHHHH----cCCEEEEEechh-HHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC--C--CCcCCCCCc
Q 023543 127 VELGSGCGLVGCIAAL----LGAQVILTDLPD-RLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP--D--QDLIQPLPD 197 (281)
Q Consensus 127 LELGcGtG~~~i~~a~----~g~~V~~tD~~~-~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~--~--~~~~~~~fD 197 (281)
+|+|.|+ ..|..+. .+...++||+.+ .+..++.|+.+|++. ..+.+....--+.. + ...++.-||
T Consensus 107 iDIgtga--sci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls----s~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 107 IDIGTGA--SCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS----SLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeccCch--hhhHHhhhchhccceeeeeeccccccchhhccccccccc----cceeeEEecchhhcchhhhccCccceee
Confidence 6887654 4444332 345689999955 599999999999887 45555443211100 0 011234588
Q ss_pred EEEEccccCC
Q 023543 198 YVLGSDVIYS 207 (281)
Q Consensus 198 ~Iia~d~iy~ 207 (281)
+.+++..+|.
T Consensus 181 FcMcNPPFfe 190 (419)
T KOG2912|consen 181 FCMCNPPFFE 190 (419)
T ss_pred EEecCCchhh
Confidence 8888777665
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=83.32 E-value=2 Score=39.23 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=33.2
Q ss_pred EEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHH
Q 023543 126 IVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIE 164 (281)
Q Consensus 126 VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~ 164 (281)
|+||-||.|.+++.+...|.+ +.++|+ +.+.+..+.|..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 689999999888888888988 578999 778888888753
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.31 E-value=2.4 Score=37.63 Aligned_cols=60 Identities=27% Similarity=0.337 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhhcc-CccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEechhHHHHHHHH
Q 023543 103 GVVLGKFLEHAVDS-GMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKN 162 (281)
Q Consensus 103 s~~la~~l~~~~~~-~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~~l~~~~~N 162 (281)
-..|..|+...... .....+|+.+.||-+|||++|-.+-+.|.+|++-|+..--.++-+|
T Consensus 7 K~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ysylln~~ 67 (330)
T COG3392 7 KYKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEYYSYLLNQN 67 (330)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHHHHHHHHHH
Confidence 45677777664321 2234678899999999999999999999999999995443334333
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=83.15 E-value=5.7 Score=36.01 Aligned_cols=128 Identities=19% Similarity=0.221 Sum_probs=77.6
Q ss_pred hHHHHHHHHhhhhccCccccC-CCeEEEECCCcCHHHHHHHHc-CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLH-GKKIVELGSGCGLVGCIAALL-GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~-~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
+-.+-++|+...+.. .... -+.|+-||||.=.=+--+-.. +.+|.=+|+|++++.=++.+...+... ....++.
T Consensus 73 ~~a~Rtr~fD~~~~~--~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~--~~~~~~V 148 (297)
T COG3315 73 FLAARTRYFDDFVRA--ALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATP--PAHRRLV 148 (297)
T ss_pred hHHHHHHHHHHHHHH--HHHhcccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCC--CceEEEE
Confidence 344445555543211 1123 378999999953111111111 457999999999988777777765432 2345555
Q ss_pred EEecC-CCCCCCcC-----CCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 180 ELTWG-DDPDQDLI-----QPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 180 ~l~w~-~~~~~~~~-----~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
..|.. ++....+. ....-++|+-.++++ ++....++..|..++.||..+++.+.
T Consensus 149 a~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 149 AVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred eccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 55544 22222222 233356777666655 67789999999999999998877764
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.10 E-value=18 Score=35.25 Aligned_cols=48 Identities=21% Similarity=0.108 Sum_probs=37.2
Q ss_pred CCCeEEEECCCcCHHHHHHHH-cC-----CEEEEEec-hhHHHHHHHHHHHhhcC
Q 023543 122 HGKKIVELGSGCGLVGCIAAL-LG-----AQVILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~-~g-----~~V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
...+|.|--||+|..-+.+++ .+ ..++|.+. +....+++.|+-.++..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 456999999999955444443 22 34899999 77899999999999876
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=82.93 E-value=3.1 Score=38.97 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=63.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CC-EEEEEec-hhHHHHHHHHHHHh----hcCCCCCCceEEEEEecCCCCCCCcCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GA-QVILTDL-PDRLRLLKKNIENN----LRHGDLRGSAVVTELTWGDDPDQDLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~-~V~~tD~-~~~l~~~~~N~~~n----~~~~~~~~~i~~~~l~w~~~~~~~~~~ 193 (281)
-++....|||+|.|-+...+|.. +. +=+|+.+ ...-+.+..|...+ ..-......+.....++-+........
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~ 270 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQ 270 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHh
Confidence 35678899999999665555543 33 3455555 33333343333332 111111223344443322111111223
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
...++|+...+.+.++..-.+- .+-.-|++|++++=.-+.+
T Consensus 271 ~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 271 TEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIISSKPLV 311 (419)
T ss_pred hcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEecccccc
Confidence 5679999999998877766655 6666778999887555443
|
|
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=82.89 E-value=2.2 Score=37.52 Aligned_cols=111 Identities=18% Similarity=0.151 Sum_probs=65.7
Q ss_pred CcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-
Q 023543 132 GCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS- 207 (281)
Q Consensus 132 GtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~- 207 (281)
=.|.+.++... ..-+.++.|+ +...+.++.|+... .++.+...|--......++.++=.-+|..|.-|.
T Consensus 65 YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~-------~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 65 YPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD-------RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQ 137 (245)
T ss_dssp EE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT-------S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----S
T ss_pred CCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC-------CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCC
Confidence 34555555544 4557999999 88888888887653 3566666431110001122223356677888776
Q ss_pred CCcHHHHHHHHHHhhC--CCcEEEEEEeeeChhHHHHHHHHHhc
Q 023543 208 EGAVGDLLDTLLQLCG--TQTTIFLAGELRNDSVLEYFLEAAMK 249 (281)
Q Consensus 208 ~~~~~~ll~~l~~ll~--~~g~~~l~~~~r~~~~~~~fl~~~~~ 249 (281)
..+++.+++++...++ +.|++++=++..+....+.|.+.+.+
T Consensus 138 ~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~ 181 (245)
T PF04378_consen 138 KDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKA 181 (245)
T ss_dssp TTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHh
Confidence 6789999999999886 68888888998888778889888874
|
; PDB: 2OO3_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=82.73 E-value=5.3 Score=36.33 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=37.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIEN 165 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~ 165 (281)
.+|+.++|-=+|.|--+..++.. ..+|+++|. ++++..+++++..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 46789999999999777776653 368999999 8999999888765
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=82.61 E-value=4.1 Score=41.50 Aligned_cols=96 Identities=24% Similarity=0.243 Sum_probs=60.2
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcC----CCC--------CCceEEEEEecCCCCC
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH----GDL--------RGSAVVTELTWGDDPD 188 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~----~~~--------~~~i~~~~l~w~~~~~ 188 (281)
++|-=||+|+ | -++..+|..|.+|++.|. ++.++.++..+..+-.. ... ..++.+. ...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-----~~~~ 388 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-----LDYA 388 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-----CCHH
Confidence 4788999997 4 456677788999999999 77787766655443111 000 0122221 1111
Q ss_pred CCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 189 QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
. -...|+||-+ +.-+.+.-..+++.+.++++|++++
T Consensus 389 -~--~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~il 424 (715)
T PRK11730 389 -G--FERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTIL 424 (715)
T ss_pred -H--hcCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEE
Confidence 1 1456887765 4444566778899999888887654
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.40 E-value=4.3 Score=37.01 Aligned_cols=99 Identities=19% Similarity=0.111 Sum_probs=51.7
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|+|. |...+.+|+ .|+ +|++++. ++..+.+++ .+.. .-+.....+|.+..........+
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~----~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGAT----IVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC----EEECCCccCHHHHHHHHhCCCCC
Confidence 4678888888652 333333343 688 7999988 566666543 1221 00111111111110001122358
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+-+--- ...++...+.++++|.++....
T Consensus 243 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 243 DVSFDCAGV------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CEEEECCCC------HHHHHHHHHhccCCCEEEEEcc
Confidence 988864321 3356666778899998776543
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.34 E-value=14 Score=33.93 Aligned_cols=97 Identities=19% Similarity=0.149 Sum_probs=53.5
Q ss_pred cCCCeEEEECC-C-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEE-EecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE-LTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGc-G-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~-l~w~~~~~~~~~~~~ 195 (281)
.+|.+||=.|+ | .|..++.+|+ .|++|++++. ++..+.+++. .+.. .-+.... -++.+... ......
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~----~vi~~~~~~~~~~~i~-~~~~~g 228 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD----EAFNYKEEPDLDAALK-RYFPEG 228 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC----EEEECCCcccHHHHHH-HHCCCC
Confidence 46889999998 3 3666665665 6889999988 5555555422 2221 0011000 01110000 112246
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+-+ +- ...+....++++++|.+++..
T Consensus 229 vD~v~d~--vG-----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 229 IDIYFDN--VG-----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred cEEEEEC--CC-----HHHHHHHHHHhccCCEEEEEC
Confidence 8877743 21 235666778889999877654
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=82.32 E-value=10 Score=33.00 Aligned_cols=92 Identities=22% Similarity=0.224 Sum_probs=52.0
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..++.+||=.|||. |...+.+|+ .|.+ |++++. ++..+.+++. +.. ..+ .. ..+ .......
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~----~~~--~~--~~~---~~~~~~~ 159 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPA----DPV--AA--DTA---DEIGGRG 159 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCC----ccc--cc--cch---hhhcCCC
Confidence 35678898888764 444444454 6777 999998 6666555432 210 010 00 000 0112346
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+.+-.. ...+....+.++++|.++...
T Consensus 160 ~d~vl~~~~~------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 160 ADVVIEASGS------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CCEEEEccCC------hHHHHHHHHHhcCCcEEEEEe
Confidence 8988754221 346666777889999876554
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.31 E-value=7.2 Score=35.95 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=48.7
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhH-HHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDR-LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~-l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+||=.|||. |...+.+|+ .|++|++++. ++. .+.+++ .+.. .+....-.+... ... ..+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~----~Ga~-------~vi~~~~~~~~~-~~~-~~~ 248 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR----LGAD-------SFLVSTDPEKMK-AAI-GTM 248 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh----CCCc-------EEEcCCCHHHHH-hhc-CCC
Confidence 3678888898864 555555555 6889888887 443 222221 2211 000000000000 011 247
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+-+-- . ...+....++++++|.++...
T Consensus 249 D~vid~~g--~----~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 249 DYIIDTVS--A----VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CEEEECCC--C----HHHHHHHHHHhcCCcEEEEeC
Confidence 87774322 1 335566677889999877554
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=81.83 E-value=0.48 Score=36.29 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=29.7
Q ss_pred CCcEEEEccccCC------CCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 195 LPDYVLGSDVIYS------EGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 195 ~fD~Iia~d~iy~------~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+||+|+|-.+.-+ .+-+..+++.+.++|+|||.+++-.+.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 4899999877644 345788999999999999999988654
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=81.74 E-value=6.2 Score=35.65 Aligned_cols=79 Identities=19% Similarity=0.127 Sum_probs=53.6
Q ss_pred cccCCCeEEEECCCcC---HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC----
Q 023543 119 LLLHGKKIVELGSGCG---LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD---- 190 (281)
Q Consensus 119 ~~~~~~~VLELGcGtG---~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~---- 190 (281)
..++|+.||==|.|.| .+++.+|++|++++..|+ ++..+...+.++.+| .+....-|..+..+..
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-------~~~~y~cdis~~eei~~~a~ 106 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-------EAKAYTCDISDREEIYRLAK 106 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-------ceeEEEecCCCHHHHHHHHH
Confidence 4578999999999998 467778889999999999 666666666666653 3555555554432210
Q ss_pred ---cCCCCCcEEEEccc
Q 023543 191 ---LIQPLPDYVLGSDV 204 (281)
Q Consensus 191 ---~~~~~fD~Iia~d~ 204 (281)
-..++.|++|.+.-
T Consensus 107 ~Vk~e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 107 KVKKEVGDVDILVNNAG 123 (300)
T ss_pred HHHHhcCCceEEEeccc
Confidence 01256788887443
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=81.02 E-value=11 Score=34.25 Aligned_cols=98 Identities=24% Similarity=0.262 Sum_probs=58.4
Q ss_pred eEEEECCCc--CHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCc-eEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 125 KIVELGSGC--GLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGS-AVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 125 ~VLELGcGt--G~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~-i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
+|+=+|||. |++|..+++.|..|+.+-.++.++..+++ ++.+..... ....... .......+++|+|+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~----GL~i~~~~~~~~~~~~~----~~~~~~~~~~Dlviv 73 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKK----GLRIEDEGGNFTTPVVA----ATDAEALGPADLVIV 73 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhC----CeEEecCCCcccccccc----ccChhhcCCCCEEEE
Confidence 677899996 57788888888667776665556555543 333111011 0011100 011112247899886
Q ss_pred ccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 202 SDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 202 ~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+= ...+.+..++.+..++++.+.+++...
T Consensus 74 ~v---Ka~q~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 74 TV---KAYQLEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred Ee---ccccHHHHHHHhhhcCCCCcEEEEEeC
Confidence 42 234568999999999999998766544
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.80 E-value=31 Score=30.65 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=53.7
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC------C
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD------Q 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~------~ 189 (281)
.+.++.+|-=|...|+ ++..+++.|++|+.++. ++.++.+..-....+.. ..++.....|-.+..+ .
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~l~~~ 81 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYT---GGKVLAIVCDVSKEVDVEKLVEF 81 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC---CCeeEEEECcCCCHHHHHHHHHH
Confidence 4789999999999884 45677889999999999 77776666555544332 2345555555432211 0
Q ss_pred Cc--CCCCCcEEEEcccc
Q 023543 190 DL--IQPLPDYVLGSDVI 205 (281)
Q Consensus 190 ~~--~~~~fD~Iia~d~i 205 (281)
.. ...++|+++.+.-.
T Consensus 82 ~~~~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 82 AVEKFFGKIDILVNNAGA 99 (270)
T ss_pred HHHHhCCCCCEEEEcCCc
Confidence 01 13567888875444
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.65 E-value=9.8 Score=35.38 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=48.7
Q ss_pred CCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhH-HHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-CCcCCCCC
Q 023543 122 HGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDR-LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-QDLIQPLP 196 (281)
Q Consensus 122 ~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~-l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~~~~~~~f 196 (281)
+|.+||=.|||. |..++.+|+ .|++|+++|. ++. .+.++ ..+.. .+ ++..+... .... +.+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~-------~~--i~~~~~~~v~~~~-~~~ 243 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD-------SF--LVTTDSQKMKEAV-GTM 243 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc-------EE--EcCcCHHHHHHhh-CCC
Confidence 578898888864 555555555 6889999987 443 33332 12221 01 11111000 0011 247
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+-+-- ....+....++++++|.++...
T Consensus 244 D~vid~~G------~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 244 DFIIDTVS------AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred cEEEECCC------cHHHHHHHHHhhcCCCEEEEEc
Confidence 87775421 1335566667788988876554
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.53 E-value=2.8 Score=40.13 Aligned_cols=110 Identities=20% Similarity=0.181 Sum_probs=59.8
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc--C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL--G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~--g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
.+....++|+|.|.|.-+-++..+ + ..++.+|. ..|+.....|... +..+ +...+..+-.-+..-+.....
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~---g~~~v~~~~~~r~~~pi~~~~ 273 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHI---GEPIVRKLVFHRQRLPIDIKN 273 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhc---CchhccccchhcccCCCCccc
Confidence 356678999999987543333332 2 24899999 6677777666554 1110 112222211112222222335
Q ss_pred CCcEEEEccccCCC---CcHHHHHHHHHHh-hCCCcEEEEEEe
Q 023543 195 LPDYVLGSDVIYSE---GAVGDLLDTLLQL-CGTQTTIFLAGE 233 (281)
Q Consensus 195 ~fD~Iia~d~iy~~---~~~~~ll~~l~~l-l~~~g~~~l~~~ 233 (281)
.||+||++..++.. ..-..+.+.+.+- .++|+.+++...
T Consensus 274 ~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 274 GYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred ceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 69999999998772 2333444444443 456666555543
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=80.31 E-value=6.3 Score=36.33 Aligned_cols=40 Identities=35% Similarity=0.545 Sum_probs=27.5
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHH
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLK 160 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~ 160 (281)
.+|.+||=+|+|. |...+.+|+ .|+ +|+++|. ++.++.++
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK 228 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 4688999998753 444444444 688 6999998 66666554
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=80.12 E-value=18 Score=32.58 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=51.1
Q ss_pred CCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 122 HGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 122 ~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
++.+||-.|||. |...+.+|+ +|. +|++++. ++..+.+++ . +.. .-+.....++. .......++|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~---g~~----~vi~~~~~~~~---~~~~~~~~vd 233 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-M---GAD----ETVNLARDPLA---AYAADKGDFD 233 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-c---CCC----EEEcCCchhhh---hhhccCCCcc
Confidence 788999988763 444444444 687 7999988 555554443 1 111 00000000000 0000123589
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+++.+--. ...++.+.+.|+++|+++...
T Consensus 234 ~vld~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 234 VVFEASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 88865321 345667778889999877543
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 281 | ||||
| 3bzb_A | 281 | Crystal Structure Of Uncharacterized Protein Cmq451 | 4e-04 |
| >pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From The Primitive Red Alga Cyanidioschyzon Merolae Length = 281 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-31
Identities = 55/249 (22%), Positives = 81/249 (32%), Gaps = 29/249 (11%)
Query: 37 SESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTG 96
S S +A + + P + +S + G L + +
Sbjct: 1 SNSRAADQLELDGLPGTPPDFYRERQ---RSRVERYQSPAGAPLQCSVQVQTTQEHPLWT 57
Query: 97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDR 155
S +W L L + L+ GK + ELG+G GLV +A L GA QV+ TD PD
Sbjct: 58 SHVWSGARALADTLCWQPE----LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDP 113
Query: 156 --LRLLKKNIENNLR-----HGDLRGSAVVTELTWGDDPD---QDLIQPLPDYVLGSDVI 205
L L+ NI + R S V WGD PD + VL +D++
Sbjct: 114 EILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLL 173
Query: 206 YSEGAVGDLLDTLLQLCGTQTT-----IFLAGELRNDSVLE---YFLEAAMKDF---VIG 254
A LL ++ L + + E F D
Sbjct: 174 SFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEP 233
Query: 255 RVEQTQWHP 263
+ Q P
Sbjct: 234 WLSPLQMDP 242
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-05
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 119 LLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENN------LRHG 170
+ G+ +++ G+G G++ C + LLGA V D+ PD + K+N +
Sbjct: 48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEI 107
Query: 171 DLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS 207
+ + +G + S IYS
Sbjct: 108 SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYS 144
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-05
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDL 172
+ GK + +LG+G G++ A LLGA +VI ++ + + +L +N+ +
Sbjct: 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKV 101
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 22/102 (21%)
Query: 70 NLRIDA-CGHSLSILQSPSSL--GTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKI 126
+ R+D +L I+QSPS D+ V+L KF + G KI
Sbjct: 11 DERLDYLLAENLRIIQSPSVFSFSI---------DA-VLLAKFSYLPIRKG-------KI 53
Query: 127 VELGSGCGLVG-CIAALLGAQVILTDL-PDRLRLLKKNIENN 166
++L SG G++ ++ A+++ ++ + K+++ N
Sbjct: 54 IDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN 95
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178
V++G G G V A +V D P+ + + N++ RHG ++
Sbjct: 31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQ---RHGLGDNVTLM 87
Query: 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLC 222
GD P+ P D + V S G + ++L +
Sbjct: 88 E----GDAPEALCKIPDIDIAV---VGGSGGELQEILRIIKDKL 124
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 5e-04
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 123 GKKIVELGSGCGLVGCIAA--LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVT 179
+I +LG+G G G A L A+V L + + ++++E V
Sbjct: 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA-FSARIEVL 95
Query: 180 ELTWGDDPDQDLIQPLP----DYVLGS 202
E + LP +V+ +
Sbjct: 96 EADVTLRAKARVEAGLPDEHFHHVIMN 122
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.88 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.76 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.71 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.69 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.65 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.64 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.63 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.62 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.62 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.61 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.61 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.61 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.61 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.61 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.61 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.6 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.6 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.59 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.59 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.59 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.58 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.58 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.58 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.58 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.58 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.58 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.58 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.58 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.58 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.58 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.57 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.57 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.57 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.57 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.57 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.56 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.56 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.56 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.56 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.55 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.55 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.55 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.54 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.54 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.54 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.53 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.53 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.53 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.53 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.52 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.52 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.52 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.51 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.51 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.51 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.51 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.51 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.51 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.51 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.49 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.49 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.49 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.49 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.49 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.48 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.48 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.48 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.48 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.48 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.48 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.47 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.47 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.47 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.47 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.47 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.46 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.46 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.46 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.46 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.46 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.46 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.46 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.46 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.45 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.45 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.45 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.45 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.45 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.45 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.44 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.44 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.44 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.44 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.44 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.44 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.43 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.43 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.42 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.42 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.42 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.42 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.42 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.42 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.41 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.41 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.41 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.41 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.41 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.41 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.4 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.4 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.4 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.4 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.4 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.4 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.39 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.39 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.39 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.39 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.39 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.39 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.39 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.38 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.37 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.37 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.37 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.37 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.37 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.37 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.37 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.36 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.36 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.35 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.35 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.35 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.35 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.35 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.35 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.35 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.35 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.34 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.34 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.34 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.34 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.34 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.33 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.33 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.33 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.33 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.33 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.32 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.32 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.32 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.32 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.31 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.31 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.31 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.31 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.3 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.3 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.3 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.29 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.29 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.29 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.28 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.28 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.28 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.28 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.27 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.27 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.27 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.27 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.26 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.26 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.26 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.26 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.26 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.25 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.25 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.25 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.25 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.24 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.24 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.24 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.24 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.24 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.24 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.23 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.23 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.22 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.22 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.22 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.22 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.21 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.21 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.2 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.2 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.2 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.19 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.19 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.18 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.18 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.17 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.17 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.17 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.17 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.16 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.16 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.16 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.16 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.15 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.14 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.13 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.13 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.12 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.12 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.11 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.09 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.09 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.08 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.08 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.08 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.07 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.07 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.07 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.07 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.05 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.05 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.04 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.04 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.04 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.04 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.02 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.01 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.01 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.0 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.0 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.98 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.98 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.98 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.97 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.95 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.93 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.9 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.88 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.88 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.87 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.87 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.86 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.86 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.85 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.85 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.84 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.8 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.79 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.79 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.78 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.77 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.72 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.71 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.64 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.64 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.6 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.59 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.54 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.54 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.53 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.5 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.49 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.45 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.4 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.37 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.35 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.34 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.34 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.3 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.26 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.17 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.12 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.98 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.97 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.95 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.86 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.85 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.83 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.82 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.77 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.76 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.74 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.67 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.67 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.64 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.48 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.34 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.15 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.04 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.85 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.84 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.17 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.02 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.86 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.86 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.69 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 95.68 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.6 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.56 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 95.46 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.44 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.38 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.24 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.0 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.97 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.85 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.73 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.72 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.54 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 94.53 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.42 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 94.41 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.25 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.22 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.15 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.15 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.01 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.98 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.91 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 93.82 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.65 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.62 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 93.48 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.03 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 92.99 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.84 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.66 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 92.39 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.2 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.16 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 91.82 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 91.68 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.66 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 91.04 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 90.56 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 90.46 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 90.04 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 89.8 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 89.08 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 88.72 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 88.71 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 88.51 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 87.89 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 87.84 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 87.2 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 87.08 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 86.65 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 86.63 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 86.54 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 85.67 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.39 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 85.31 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 85.22 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 85.04 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 84.77 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 84.46 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 84.07 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 83.19 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 83.09 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 82.99 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 82.9 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 82.8 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 82.74 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 82.12 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 81.71 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 81.66 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 81.66 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 80.96 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 80.82 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 80.78 |
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=177.72 Aligned_cols=184 Identities=26% Similarity=0.307 Sum_probs=126.2
Q ss_pred CCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec--hhHHHHHHHHHHHhhc
Q 023543 92 PGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL--PDRLRLLKKNIENNLR 168 (281)
Q Consensus 92 ~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~--~~~l~~~~~N~~~n~~ 168 (281)
...+|..+|+++..|++|+..... ..++++|||||||+|.+++.+++.|+ +|+++|+ +.+++.+++|+..|..
T Consensus 53 ~~~~g~~~~~~~~~l~~~l~~~~~----~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~ 128 (281)
T 3bzb_A 53 HPLWTSHVWSGARALADTLCWQPE----LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTA 128 (281)
T ss_dssp ---------CHHHHHHHHHHHCGG----GTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC
T ss_pred CCCCCceeecHHHHHHHHHHhcch----hcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhh
Confidence 455788999999999999987532 35788999999999999999999887 8999999 4789999999965532
Q ss_pred CCC-----CCCceEEEEEecCCCCCCCc---CCCCCcEEEEccccCCCCcHHHHHHHHHHhhC---C--CcEEEEEEeee
Q 023543 169 HGD-----LRGSAVVTELTWGDDPDQDL---IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCG---T--QTTIFLAGELR 235 (281)
Q Consensus 169 ~~~-----~~~~i~~~~l~w~~~~~~~~---~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~---~--~g~~~l~~~~r 235 (281)
... ...++.+..++|++...... ...+||+|+++|++|+...+..+++.+.++|+ | +|.++++...+
T Consensus 129 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~ 208 (281)
T 3bzb_A 129 NSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHH 208 (281)
T ss_dssp ----------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-
T ss_pred hhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEee
Confidence 110 11368889999987543221 35789999999999999999999999999999 9 99988776654
Q ss_pred Ch---hHHHHHHHHHh-cC-CeEEEE-ecCCCCCCCCC--------CcEEEEEEEecC
Q 023543 236 ND---SVLEYFLEAAM-KD-FVIGRV-EQTQWHPDYCS--------PRVVVYILVKKL 279 (281)
Q Consensus 236 ~~---~~~~~fl~~~~-~~-f~v~~i-~~~~~~~~~~~--------~~~~i~~~~~k~ 279 (281)
.. .....|++.+. .| |.+..+ ....|.+.|.. ..+.+|.+++++
T Consensus 209 ~~~~~~~~~~~~~~l~~~G~f~v~~~~~~~~~~~~f~~~~~~~~~r~~V~~~~l~~~~ 266 (281)
T 3bzb_A 209 RPHLAERDLAFFRLVNADGALIAEPWLSPLQMDPMFPDDPGDVCIRGQVHRWRLRWRS 266 (281)
T ss_dssp -------CTHHHHHHHHSTTEEEEEEECCC------------------CEEEEEEEC-
T ss_pred ecccchhHHHHHHHHHhcCCEEEEEeccccccccccccCCcchhccceEEEEEEEccc
Confidence 42 12345777766 48 999888 33345555432 367788887764
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-18 Score=147.48 Aligned_cols=186 Identities=19% Similarity=0.155 Sum_probs=135.4
Q ss_pred CCCchhhhHHHhhccCCCCCCCCCcccccccceEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccC
Q 023543 38 ESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSG 117 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~ 117 (281)
+++||.+.+...| +|..... .+|.+.+.. + ....+.+..+|+.+++.|+ ++++..+.+++...
T Consensus 55 ~~~dw~~~~~~~~---~p~~~~~-~~i~~~w~~---~-~~~~~~~~l~p~~~fgtg~-----~~tt~~~~~~l~~~---- 117 (254)
T 2nxc_A 55 GDEDWLEAWRRDL---KPALAPP-FVVLAPWHT---W-EGAEIPLVIEPGMAFGTGH-----HETTRLALKALARH---- 117 (254)
T ss_dssp CHHHHHHHHHHHC---CCEEETT-EEEECTTCC---C-CSSSEEEECCCC-----CC-----SHHHHHHHHHHHHH----
T ss_pred ChhHHHHHHHhhC---CCEEEec-EEEeCCCCC---C-CCCceEEEECCCccccCCC-----CHHHHHHHHHHHHh----
Confidence 5677888887777 6776556 677776655 2 2345677778877654443 78888888888764
Q ss_pred ccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 118 MLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 118 ~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..++++|||+|||+|.+++.+++.|++|+++|+ +.+++.+++|+..|+.. +.+...++.+. +...+|
T Consensus 118 --~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~------v~~~~~d~~~~----~~~~~f 185 (254)
T 2nxc_A 118 --LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR------PRFLEGSLEAA----LPFGPF 185 (254)
T ss_dssp --CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC------CEEEESCHHHH----GGGCCE
T ss_pred --cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc------EEEEECChhhc----CcCCCC
Confidence 346889999999999999999999999999999 88999999999998753 55555444321 334689
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
|+|+++.+. ..+..+++.+.++|+|||.++++....... +.+.+.+. .||.+..+.
T Consensus 186 D~Vv~n~~~---~~~~~~l~~~~~~LkpgG~lils~~~~~~~--~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 186 DLLVANLYA---ELHAALAPRYREALVPGGRALLTGILKDRA--PLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp EEEEEECCH---HHHHHHHHHHHHHEEEEEEEEEEEEEGGGH--HHHHHHHHHTTCEEEEEE
T ss_pred CEEEECCcH---HHHHHHHHHHHHHcCCCCEEEEEeeccCCH--HHHHHHHHHCCCEEEEEe
Confidence 999986432 346789999999999999999987665432 33455555 489987764
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-16 Score=143.83 Aligned_cols=184 Identities=15% Similarity=0.144 Sum_probs=135.1
Q ss_pred cccceEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC
Q 023543 66 QSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA 145 (281)
Q Consensus 66 ~~~~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~ 145 (281)
+.+.+++..+.+..+++...++.++..+ +.+++..+.+++...... ...++++|||+|||+|.+++.+++.++
T Consensus 184 ~~w~~~~~~~~g~~~~~~~~pgvFs~~~-----~d~~t~~ll~~l~~~l~~--~~~~~~~VLDlGcG~G~~~~~la~~g~ 256 (381)
T 3dmg_A 184 SLWRAFSARILGAEYTFHHLPGVFSAGK-----VDPASLLLLEALQERLGP--EGVRGRQVLDLGAGYGALTLPLARMGA 256 (381)
T ss_dssp CCCEEEEEEETTEEEEEEECTTCTTTTS-----CCHHHHHHHHHHHHHHCT--TTTTTCEEEEETCTTSTTHHHHHHTTC
T ss_pred cccceeeEEecCceEEEEeCCCceeCCC-----CCHHHHHHHHHHHHhhcc--cCCCCCEEEEEeeeCCHHHHHHHHcCC
Confidence 3455667777899999999998876443 367888888888754210 124788999999999999999999999
Q ss_pred EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-----CCcHHHHHHHHH
Q 023543 146 QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS-----EGAVGDLLDTLL 219 (281)
Q Consensus 146 ~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~-----~~~~~~ll~~l~ 219 (281)
+|+++|+ +.+++.+++|+..|+.. +.+...|+.+ ....+.+||+|+++.++++ ......+++.+.
T Consensus 257 ~V~gvDis~~al~~A~~n~~~~~~~------v~~~~~D~~~---~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~ 327 (381)
T 3dmg_A 257 EVVGVEDDLASVLSLQKGLEANALK------AQALHSDVDE---ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAA 327 (381)
T ss_dssp EEEEEESBHHHHHHHHHHHHHTTCC------CEEEECSTTT---TSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCC------eEEEEcchhh---ccccCCCeEEEEECCchhhcccccHHHHHHHHHHHH
Confidence 9999999 88999999999998754 5566655432 2223468999999888776 566789999999
Q ss_pred HhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCCcEEEEEEEec
Q 023543 220 QLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCSPRVVVYILVKK 278 (281)
Q Consensus 220 ~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~~~~~i~~~~~k 278 (281)
++|+|||.++++...... ++.+++......+. +. ..+|.||...+.
T Consensus 328 ~~LkpGG~l~iv~n~~l~--~~~~l~~~f~~v~~--l~---------~~gF~Vl~a~~~ 373 (381)
T 3dmg_A 328 ARLRPGGVFFLVSNPFLK--YEPLLEEKFGAFQT--LK---------VAEYKVLFAEKR 373 (381)
T ss_dssp HHEEEEEEEEEEECTTSC--HHHHHHHHHSCCEE--EE---------ESSSEEEEEECC
T ss_pred HhcCcCcEEEEEEcCCCC--hHHHHHHhhccEEE--Ee---------CCCEEEEEEEEe
Confidence 999999999988654332 23344444333332 22 347777777664
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-16 Score=135.82 Aligned_cols=179 Identities=17% Similarity=0.171 Sum_probs=125.8
Q ss_pred cCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCcccc-CCCeEEEECCCcCHHHHHHHHcCC-EEEEEec
Q 023543 75 ACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLL-HGKKIVELGSGCGLVGCIAALLGA-QVILTDL 152 (281)
Q Consensus 75 ~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~-~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~ 152 (281)
..+..+.|.|.++.+ +....+.+|+.|+. .. ++++|||+|||+|.+++.+++.+. +|+++|+
T Consensus 17 ~~~~~~~i~q~~~~~--------~~~~d~~ll~~~~~--------~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi 80 (259)
T 3lpm_A 17 LLAENLRIIQSPSVF--------SFSIDAVLLAKFSY--------LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEI 80 (259)
T ss_dssp ETTTTEEEEEBTTTB--------CCCHHHHHHHHHCC--------CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECC
T ss_pred ccCCCEEEEeCCCCc--------cCcHHHHHHHHHhc--------CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEEC
Confidence 345678999988543 33445788888863 23 688999999999999999998766 8999999
Q ss_pred -hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCC--------------------CcH
Q 023543 153 -PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE--------------------GAV 211 (281)
Q Consensus 153 -~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~--------------------~~~ 211 (281)
+.+++.+++|+..|+.. +++.+...|+.+... .+...+||+|+++.+.+.. ..+
T Consensus 81 ~~~~~~~a~~n~~~~~~~----~~v~~~~~D~~~~~~-~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~ 155 (259)
T 3lpm_A 81 QERLADMAKRSVAYNQLE----DQIEIIEYDLKKITD-LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTL 155 (259)
T ss_dssp SHHHHHHHHHHHHHTTCT----TTEEEECSCGGGGGG-TSCTTCEEEEEECCCC-----------------------HHH
T ss_pred CHHHHHHHHHHHHHCCCc----ccEEEEECcHHHhhh-hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCH
Confidence 88999999999999876 568888876644321 1335789999997665543 235
Q ss_pred HHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEecCCCCCCCCCCcEEEEEEEec
Q 023543 212 GDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQTQWHPDYCSPRVVVYILVKK 278 (281)
Q Consensus 212 ~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~~~~~~~~~~~~~~i~~~~~k 278 (281)
..+++.+.++|+|||.+++...... ...++..+. .+|.+..+..-.-.+. +.....+....|.
T Consensus 156 ~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~l~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~k~ 219 (259)
T 3lpm_A 156 EDTIRVAASLLKQGGKANFVHRPER---LLDIIDIMRKYRLEPKRIQFVHPRSD-REANTVLVEGIKD 219 (259)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECTTT---HHHHHHHHHHTTEEEEEEEEEESSTT-SCCSEEEEEEEET
T ss_pred HHHHHHHHHHccCCcEEEEEEcHHH---HHHHHHHHHHCCCceEEEEEeecCCC-CCcEEEEEEEEeC
Confidence 6799999999999999988654333 234555555 4888777654322222 2334555555553
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-14 Score=118.34 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=107.3
Q ss_pred EEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEE
Q 023543 71 LRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILT 150 (281)
Q Consensus 71 ~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~t 150 (281)
+.....+..+.+...++.+.... ....+..+.+++. ..++.+|||+|||+|..++.+++.+.+|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--------~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~ 80 (194)
T 1dus_A 14 VEDILRGKKLKFKTDSGVFSYGK-----VDKGTKILVENVV--------VDKDDDILDLGCGYGVIGIALADEVKSTTMA 80 (194)
T ss_dssp EEEEETTEEEEEEEETTSTTTTS-----CCHHHHHHHHHCC--------CCTTCEEEEETCTTSHHHHHHGGGSSEEEEE
T ss_pred EeeecCCCceEEEeCCCcCCccc-----cchHHHHHHHHcc--------cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEE
Confidence 34445688888877665543111 1233444444432 2367899999999999999999888899999
Q ss_pred ec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-CCcHHHHHHHHHHhhCCCcEE
Q 023543 151 DL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS-EGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 151 D~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~-~~~~~~ll~~l~~ll~~~g~~ 228 (281)
|+ +.+++.+++|+..++.. ..++.+...++.+. ....+||+|++..++++ ......+++.+.++|+|||.+
T Consensus 81 D~~~~~~~~a~~~~~~~~~~---~~~~~~~~~d~~~~----~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l 153 (194)
T 1dus_A 81 DINRRAIKLAKENIKLNNLD---NYDIRVVHSDLYEN----VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEI 153 (194)
T ss_dssp ESCHHHHHHHHHHHHHTTCT---TSCEEEEECSTTTT----CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEE
T ss_pred ECCHHHHHHHHHHHHHcCCC---ccceEEEECchhcc----cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEE
Confidence 99 88999999999988764 01388888766542 23468999999877665 466789999999999999999
Q ss_pred EEEEeeeC
Q 023543 229 FLAGELRN 236 (281)
Q Consensus 229 ~l~~~~r~ 236 (281)
++......
T Consensus 154 ~~~~~~~~ 161 (194)
T 1dus_A 154 WVVIQTKQ 161 (194)
T ss_dssp EEEEESTH
T ss_pred EEEECCCC
Confidence 88877553
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-15 Score=134.88 Aligned_cols=176 Identities=15% Similarity=0.128 Sum_probs=121.7
Q ss_pred EEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEEE
Q 023543 71 LRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVI 148 (281)
Q Consensus 71 ~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~ 148 (281)
..+.+.+..+++.+.++.++..+ +..++..+.+++. ...+++|||+|||+|.+++.+++. +.+|+
T Consensus 184 ~~~~~~~~~~~~~~~pg~Fs~~~-----~d~~~~~ll~~l~--------~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~ 250 (375)
T 4dcm_A 184 VSWKLEGTDWTIHNHANVFSRTG-----LDIGARFFMQHLP--------ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVV 250 (375)
T ss_dssp EEEEETTTTEEEEECTTCTTCSS-----CCHHHHHHHHTCC--------CSCCSEEEEETCTTCHHHHHHHHHCTTCEEE
T ss_pred eEEEecCCceEEEeCCCcccCCc-----ccHHHHHHHHhCc--------ccCCCeEEEEeCcchHHHHHHHHHCCCCEEE
Confidence 34455688899999998876333 3566666655543 234589999999999999999987 57899
Q ss_pred EEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-----CCcHHHHHHHHHHhh
Q 023543 149 LTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS-----EGAVGDLLDTLLQLC 222 (281)
Q Consensus 149 ~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~-----~~~~~~ll~~l~~ll 222 (281)
++|+ +.+++.+++|+..|+... ..++.+...|..+ .+...+||+|+++.+++. ......+++.+.++|
T Consensus 251 gvD~s~~al~~Ar~n~~~ngl~~--~~~v~~~~~D~~~----~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~L 324 (375)
T 4dcm_A 251 FVDESPMAVASSRLNVETNMPEA--LDRCEFMINNALS----GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCL 324 (375)
T ss_dssp EEESCHHHHHHHHHHHHHHCGGG--GGGEEEEECSTTT----TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHE
T ss_pred EEECcHHHHHHHHHHHHHcCCCc--CceEEEEechhhc----cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhC
Confidence 9999 889999999999998641 1145555544332 234568999999888764 334557999999999
Q ss_pred CCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCCcEEEEEEEe
Q 023543 223 GTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCSPRVVVYILVK 277 (281)
Q Consensus 223 ~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~~~~~i~~~~~ 277 (281)
+|||.++++...... ....++.....+ +.+. +..+|.||....
T Consensus 325 kpgG~l~iv~n~~~~--~~~~l~~~fg~~--~~~a--------~~~~F~V~~~~~ 367 (375)
T 4dcm_A 325 KINGELYIVANRHLD--YFHKLKKIFGNC--TTIA--------TNNKFVVLKAVK 367 (375)
T ss_dssp EEEEEEEEEEETTSC--HHHHHHHHHSCC--EEEE--------ECSSEEEEEEEC
T ss_pred CCCcEEEEEEECCcC--HHHHHHHhcCCE--EEEe--------eCCCEEEEEEcC
Confidence 999999987654332 233444433333 3333 345777776654
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=128.42 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=90.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..++.++..+.+|+++|+ +.+++.+++++..++.......++.+...+.. ...+.+.+||+|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~D~v 105 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENAS---SLSFHDSSFDFA 105 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTT---SCCSCTTCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccc---ccCCCCCceeEE
Confidence 46889999999999999999999999999999 88999999998887664222345666665543 223456789999
Q ss_pred EEccccCCCCcHH---HHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGSDVIYSEGAVG---DLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~d~iy~~~~~~---~ll~~l~~ll~~~g~~~l~~~ 233 (281)
++..++++..... .+++.+.++|+|||.+++...
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 9999999877666 899999999999999988754
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.1e-15 Score=124.47 Aligned_cols=176 Identities=15% Similarity=0.119 Sum_probs=121.2
Q ss_pred CCCCCCCcccccccceEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcC
Q 023543 55 PTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCG 134 (281)
Q Consensus 55 p~~~~~~~~v~~~~~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG 134 (281)
|...+...++.+.+..+... ......+..+++...+.+ .++.+..+.+++... ..++++|||+|||+|
T Consensus 5 ~~~~~~~~~~~p~w~~~~~~-~~~~~~~~~~~~~~f~~~-----~~~~~~~~~~~l~~~------~~~~~~vLDiG~G~G 72 (205)
T 3grz_A 5 VINLSRHLAIVPEWEDYQPV-FKDQEIIRLDPGLAFGTG-----NHQTTQLAMLGIERA------MVKPLTVADVGTGSG 72 (205)
T ss_dssp CEEEETTEEEEETTCCCCCS-STTCEEEEESCC-----C-----CHHHHHHHHHHHHHH------CSSCCEEEEETCTTS
T ss_pred cEEECCcEEEeccccccccC-CCCceeEEecCCcccCCC-----CCccHHHHHHHHHHh------ccCCCEEEEECCCCC
Confidence 33333333444444333210 234566666776533332 378888888888754 246789999999999
Q ss_pred HHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHH
Q 023543 135 LVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVG 212 (281)
Q Consensus 135 ~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~ 212 (281)
..++.+++.+. +|+++|+ +.+++.+++|+..++.. ++.+...|+.+. ...+||+|++..++ ..+.
T Consensus 73 ~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~-----~~~~fD~i~~~~~~---~~~~ 139 (205)
T 3grz_A 73 ILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY-----DIALQKTSLLAD-----VDGKFDLIVANILA---EILL 139 (205)
T ss_dssp HHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-----CCEEEESSTTTT-----CCSCEEEEEEESCH---HHHH
T ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEecccccc-----CCCCceEEEECCcH---HHHH
Confidence 99999998876 8999999 88999999999998765 377777665432 34789999997655 2357
Q ss_pred HHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEe
Q 023543 213 DLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 213 ~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
.+++.+.++|+|||.++++...... .+.+.+.+. .||.+..+.
T Consensus 140 ~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 140 DLIPQLDSHLNEDGQVIFSGIDYLQ--LPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp HHGGGSGGGEEEEEEEEEEEEEGGG--HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEecCccc--HHHHHHHHHHcCCceEEee
Confidence 8889999999999999987655443 233445555 489887765
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.8e-15 Score=125.94 Aligned_cols=143 Identities=12% Similarity=0.010 Sum_probs=106.9
Q ss_pred HHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEe
Q 023543 104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELT 182 (281)
Q Consensus 104 ~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~ 182 (281)
..+.+++... ..++++|||+|||+|..+..++..+.+|+++|+ +.+++.+++++..++.. .++.+...|
T Consensus 54 ~~l~~~~~~~------~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d 123 (235)
T 3lcc_A 54 PLIVHLVDTS------SLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKA----EYFSFVKED 123 (235)
T ss_dssp HHHHHHHHTT------CSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGG----GGEEEECCC
T ss_pred HHHHHHHHhc------CCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCC----cceEEEECc
Confidence 4455666532 245569999999999999999998999999999 88999999998875433 468888877
Q ss_pred cCCCCCCCcCCCCCcEEEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEeeeCh--------hHHHHHHHHHh-cCC
Q 023543 183 WGDDPDQDLIQPLPDYVLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGELRND--------SVLEYFLEAAM-KDF 251 (281)
Q Consensus 183 w~~~~~~~~~~~~fD~Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~r~~--------~~~~~fl~~~~-~~f 251 (281)
+.+.. ...+||+|++..++++.. ....+++.+.++|+|||.+++....... -..+.+.+.+. .||
T Consensus 124 ~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 199 (235)
T 3lcc_A 124 VFTWR----PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGF 199 (235)
T ss_dssp TTTCC----CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTE
T ss_pred hhcCC----CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCC
Confidence 65422 345899999999998866 8999999999999999998876542210 11234455555 489
Q ss_pred eEEEEecCC
Q 023543 252 VIGRVEQTQ 260 (281)
Q Consensus 252 ~v~~i~~~~ 260 (281)
.+..+....
T Consensus 200 ~~~~~~~~~ 208 (235)
T 3lcc_A 200 KAVSVEENP 208 (235)
T ss_dssp EEEEEEECT
T ss_pred eEEEEEecC
Confidence 988775543
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=119.24 Aligned_cols=131 Identities=8% Similarity=-0.026 Sum_probs=93.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..++.+++.+.+|+++|+ +++++.+++|+..++.. ++.+...+..+. . ...+.+||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-----~v~~~~~~~~~l-~-~~~~~~fD~v 93 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE-----NTELILDGHENL-D-HYVREPIRAA 93 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCC-----CEEEEESCGGGG-G-GTCCSCEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEeCcHHHH-H-hhccCCcCEE
Confidence 46889999999999999999999999999999 88999999999998764 677766332211 0 1235689999
Q ss_pred EEccccC---------CCCcHHHHHHHHHHhhCCCcEEEEEEeeeC------hhHHHHHHHHHh-cCCeEEEEec
Q 023543 200 LGSDVIY---------SEGAVGDLLDTLLQLCGTQTTIFLAGELRN------DSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 200 ia~d~iy---------~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~------~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
+++-..+ .......+++.+.++|+|||.+++...... ......|+..+. .+|.+.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (185)
T 3mti_A 94 IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQP 168 (185)
T ss_dssp EEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEE
T ss_pred EEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehh
Confidence 8763221 124456788999999999999887654322 123445565554 3687777654
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.5e-15 Score=123.90 Aligned_cols=144 Identities=16% Similarity=0.108 Sum_probs=102.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..+..+++.+.+|+++|+ +.+++.+++++ + +.+...+..+.. ...+||+|
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~--------~~~~~~d~~~~~----~~~~fD~v 106 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL---G--------RPVRTMLFHQLD----AIDAYDAV 106 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---T--------SCCEECCGGGCC----CCSCEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc---C--------CceEEeeeccCC----CCCcEEEE
Confidence 46789999999999999999999999999999 88999999887 1 122333332211 45789999
Q ss_pred EEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEeeeCh------------hHHHHHHHHHh-cC-CeEEEEecCCCCC
Q 023543 200 LGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGELRND------------SVLEYFLEAAM-KD-FVIGRVEQTQWHP 263 (281)
Q Consensus 200 ia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~r~~------------~~~~~fl~~~~-~~-f~v~~i~~~~~~~ 263 (281)
++..++++.. ....+++.+.++|+|||.++++...... -..+.+.+.+. .| |.+..+....-..
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~ 186 (211)
T 3e23_A 107 WAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKG 186 (211)
T ss_dssp EECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEEC
T ss_pred EecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCC
Confidence 9999998876 7889999999999999999988654321 02344555555 48 9988776544333
Q ss_pred CCCCCcEEEEEEEecC
Q 023543 264 DYCSPRVVVYILVKKL 279 (281)
Q Consensus 264 ~~~~~~~~i~~~~~k~ 279 (281)
........++.+.+++
T Consensus 187 ~~~~~~~wl~~~~~~~ 202 (211)
T 3e23_A 187 FDQELAQFLHVSVRKP 202 (211)
T ss_dssp TTSCEEEEEEEEEECC
T ss_pred CCCCCceEEEEEEecC
Confidence 3333344445554443
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.7e-15 Score=126.60 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=113.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++++|||||||+|..+..+++.+. +|+++|+ +.+++.+++++.. .++.+...+..+. .+.+.+||+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~---~~~~~~fD~ 111 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS--------PVVCYEQKAIEDI---AIEPDAYNV 111 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCC--------TTEEEEECCGGGC---CCCTTCEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhcc--------CCeEEEEcchhhC---CCCCCCeEE
Confidence 4788999999999999999999888 8999999 8899999887651 3677777665432 234578999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC------------------------------------------
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN------------------------------------------ 236 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~------------------------------------------ 236 (281)
|+++.++++......+++.+.++|+|||.++++.....
T Consensus 112 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (253)
T 3g5l_A 112 VLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQK 191 (253)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEE
T ss_pred EEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCcc
Confidence 99999999999999999999999999999988732100
Q ss_pred -hhHHHHHHHHHh-cCCeEEEEecCCCC----------CCCCCCcEEEEEEEecC
Q 023543 237 -DSVLEYFLEAAM-KDFVIGRVEQTQWH----------PDYCSPRVVVYILVKKL 279 (281)
Q Consensus 237 -~~~~~~fl~~~~-~~f~v~~i~~~~~~----------~~~~~~~~~i~~~~~k~ 279 (281)
..+.+.+.+.+. .||.+..+.+.... ...+.+-+.++..++++
T Consensus 192 ~~~t~~~~~~~l~~aGF~~~~~~e~~~~~~~~~~~~~~~~~~~P~fl~~~~~~~~ 246 (253)
T 3g5l_A 192 YHRTVTTYIQTLLKNGFQINSVIEPEPAPELKDLPEMQDEYRRPMMLLISATKQE 246 (253)
T ss_dssp ECCCHHHHHHHHHHTTEEEEEEECCCCCGGGSSCGGGGGGGTSCCEEEEEEEECC
T ss_pred EecCHHHHHHHHHHcCCeeeeeecCCCchhhccChhHHHhhcCceEEEEEEeccc
Confidence 003345666666 49999988755433 34456777777777654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=125.12 Aligned_cols=120 Identities=10% Similarity=0.029 Sum_probs=101.5
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
|+....+.+.+. ..++.+|||+|||+|..+..++..+.+|+++|+ +.+++.+++++..++.. ++.+
T Consensus 7 ~~~~~~~~~~~~--------~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~ 73 (239)
T 1xxl_A 7 HHSLGLMIKTAE--------CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE-----NVRF 73 (239)
T ss_dssp HHHHHHHHHHHT--------CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCC-----SEEE
T ss_pred CCCcchHHHHhC--------cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-----CeEE
Confidence 777777777764 357889999999999999999998899999999 88999999999988764 6777
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
...++.+ ..+.+.+||+|++..++++..+...+++.+.++|+|||.+++.....
T Consensus 74 ~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 74 QQGTAES---LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp EECBTTB---CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred Eeccccc---CCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 7766543 22445789999999999998899999999999999999998876543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=123.06 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=103.0
Q ss_pred cCCCeEEEECCC-cCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSG-CGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcG-tG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++++|||+||| +|.+++.+++. +.+|+++|+ +.+++.+++|+..++. ++.+...|+.... .+.+.+||
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~v~~~~~d~~~~~--~~~~~~fD 125 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS------NVRLVKSNGGIIK--GVVEGTFD 125 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC------CCEEEECSSCSST--TTCCSCEE
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEeCCchhhh--hcccCcee
Confidence 468899999999 99999999987 889999999 8899999999999875 3667776643221 23347899
Q ss_pred EEEEccccCCCCc-------------------HHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEe
Q 023543 198 YVLGSDVIYSEGA-------------------VGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 198 ~Iia~d~iy~~~~-------------------~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
+|++..+.+.... ...+++.+.++|+|||.+++....+. ...+.+.+.+. .+|.+..+.
T Consensus 126 ~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 126 VIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-KLLNVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp EEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-HHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-hHHHHHHHHHHHcCCceEEEE
Confidence 9997655443221 47899999999999999988766543 33455666665 489888875
Q ss_pred cCCCCCCCCCCcEEEEEEEec
Q 023543 258 QTQWHPDYCSPRVVVYILVKK 278 (281)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~k 278 (281)
. ..+++ -..++.++|.
T Consensus 205 ~---~~g~~--~~~~l~f~~~ 220 (230)
T 3evz_A 205 F---KVGTR--WRHSLIFFKG 220 (230)
T ss_dssp E---CCCC---CEEEEEEECC
T ss_pred e---cCCCe--EEEEEEEecc
Confidence 3 22332 3445555554
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9.5e-14 Score=117.73 Aligned_cols=170 Identities=12% Similarity=0.046 Sum_probs=115.2
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCce
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
++-.....+++...+. ..++++|||+|||+|..+..++..+ .+|+++|+ +.+++.+++++..+++......++
T Consensus 11 ~~~~~~~~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v 86 (219)
T 3jwg_A 11 LNLNQQRLGTVVAVLK----SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI 86 (219)
T ss_dssp -CHHHHHHHHHHHHHH----HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTE
T ss_pred CcchHHHHHHHHHHHh----hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcce
Confidence 4455555666655432 2467899999999999999999876 58999999 889999999998776531001257
Q ss_pred EEEEEecCCCCCCCcCCCCCcEEEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEeee-------------------
Q 023543 177 VVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGELR------------------- 235 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~r------------------- 235 (281)
.+...++. .......+||+|++.+++++.. ....+++.+.++|+|||.++......
T Consensus 87 ~~~~~d~~---~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T 3jwg_A 87 SLFQSSLV---YRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHR 163 (219)
T ss_dssp EEEECCSS---SCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCT
T ss_pred EEEeCccc---ccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCce
Confidence 77776642 2223446899999999999876 44799999999999999665543221
Q ss_pred ---ChhHHHHHHHHHh--cCCeEEEEecCCCCCCCCCCcEEEEEEEe
Q 023543 236 ---NDSVLEYFLEAAM--KDFVIGRVEQTQWHPDYCSPRVVVYILVK 277 (281)
Q Consensus 236 ---~~~~~~~fl~~~~--~~f~v~~i~~~~~~~~~~~~~~~i~~~~~ 277 (281)
....+..|+..+. .||.++...--...+.+.. ...+-.++|
T Consensus 164 ~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~~~g~-~~qi~~~~~ 209 (219)
T 3jwg_A 164 FEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDDEFGS-PTQMGVFTL 209 (219)
T ss_dssp TSBCHHHHHHHHHHHHHHHTEEEEEEEESCCCTTSCC-SEEEEEEEE
T ss_pred eeecHHHHHHHHHHHHHHCCcEEEEEecCCccccCCC-CeEEEEEec
Confidence 2234455554443 3899888755444554433 333333333
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-14 Score=121.55 Aligned_cols=129 Identities=11% Similarity=0.064 Sum_probs=102.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..+..+++.+ .+|+++|+ +.+++.+++++..++.. ++.+...++.+ ..+.+.+|
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~---~~~~~~~f 107 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-----NVEVLKSEENK---IPLPDNTV 107 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-----TEEEEECBTTB---CSSCSSCE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEeccccc---CCCCCCCe
Confidence 467899999999999999998865 68999999 88999999999988764 67777766543 22455789
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh----------hHHHHHHHHHh-cCCeEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND----------SVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~----------~~~~~fl~~~~-~~f~v~~i~ 257 (281)
|+|+++.++++..+...+++.+.++|+|||.+++....... -..+.+.+.+. .||.+..+.
T Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 108 DFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp EEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 99999999999989999999999999999999887643221 01234555555 489877664
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-15 Score=128.06 Aligned_cols=106 Identities=16% Similarity=0.076 Sum_probs=91.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..+++. .++.+...++.+.. . +.+||+
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----~~v~~~~~d~~~~~---~-~~~fD~ 106 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS----ERVHFIHNDAAGYV---A-NEKCDV 106 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEESCCTTCC---C-SSCEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC----cceEEEECChHhCC---c-CCCCCE
Confidence 46789999999999999988874 789999999 88999999999988765 47888887765422 2 578999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|++..++++......+++.+.++|+|||.+++....
T Consensus 107 V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 107 AACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp EEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred EEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCc
Confidence 999999999888999999999999999999987654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=127.36 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=98.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||||||+|.+++.+|.. +.+|+++|+ +++++.+++|+..+++. ++.+...++.+.......+.+||
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-----~v~~~~~d~~~~~~~~~~~~~fD 153 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-----GARALWGRAEVLAREAGHREAYA 153 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-----SEEEEECCHHHHTTSTTTTTCEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----ceEEEECcHHHhhcccccCCCce
Confidence 36789999999999999999975 568999999 88999999999999875 58888866543221111246899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEecC
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQT 259 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~~ 259 (281)
+|++..+ ..++.+++.+.++|+|||.+++.........+..+...+. .||.+..+...
T Consensus 154 ~I~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 154 RAVARAV----APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp EEEEESS----CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred EEEECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 9998654 4578999999999999999876554344444455555554 38887777544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=122.76 Aligned_cols=167 Identities=8% Similarity=-0.030 Sum_probs=107.5
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcC-------CCCCC
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH-------GDLRG 174 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~-------~~~~~ 174 (281)
...+.+|+... ...++.+|||+|||+|..+..+++.|.+|+++|+ +.|++.++++...+... .....
T Consensus 8 ~~~l~~~~~~l-----~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 82 (203)
T 1pjz_A 8 NKDLQQYWSSL-----NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP 82 (203)
T ss_dssp THHHHHHHHHH-----CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred CHHHHHHHHhc-----ccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCC
Confidence 34566676542 1246789999999999999999999999999999 88999998775431000 00013
Q ss_pred ceEEEEEecCCCCCCCcCC-CCCcEEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEE-eeeC-----h---hHHHH
Q 023543 175 SAVVTELTWGDDPDQDLIQ-PLPDYVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAG-ELRN-----D---SVLEY 242 (281)
Q Consensus 175 ~i~~~~l~w~~~~~~~~~~-~~fD~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~-~~r~-----~---~~~~~ 242 (281)
++.+...|..+ ....+ .+||+|++..++++. .....+++.+.++|+|||++++.. .... + -..+.
T Consensus 83 ~v~~~~~d~~~---l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~e 159 (203)
T 1pjz_A 83 GIEIWCGDFFA---LTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTW 159 (203)
T ss_dssp SSEEEEECCSS---STHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHH
T ss_pred ccEEEECcccc---CCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHH
Confidence 57777766432 22222 589999998887664 345679999999999999844433 2110 0 01233
Q ss_pred HHHHHhcCCeEEEEecCCCCC--------CCCCCcEEEEEEEe
Q 023543 243 FLEAAMKDFVIGRVEQTQWHP--------DYCSPRVVVYILVK 277 (281)
Q Consensus 243 fl~~~~~~f~v~~i~~~~~~~--------~~~~~~~~i~~~~~ 277 (281)
+.+.+..+|++..+....... .+....-.+|.++|
T Consensus 160 l~~~~~~gf~i~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~ 202 (203)
T 1pjz_A 160 LHRVMSGNWEVTKVGGQDTLHSSARGLKAGLERMDEHVYVLER 202 (203)
T ss_dssp HHHTSCSSEEEEEEEESSCTTTCHHHHHHTCSSCCEEEEEEEE
T ss_pred HHHHhcCCcEEEEeccccchhcchhhhhcCcchhheeEEEEEe
Confidence 334444489888776554322 23444566777765
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=121.23 Aligned_cols=106 Identities=11% Similarity=0.177 Sum_probs=90.4
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
++++|||+|||+|..+..+++. +.+|+++|+ +.+++.+++|+..++.. .++.+...+..+ ..+.+.+||+|
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~---~~~~~~~~D~v 115 (219)
T 3dlc_A 43 TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN----DRIQIVQGDVHN---IPIEDNYADLI 115 (219)
T ss_dssp CEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECBTTB---CSSCTTCEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcccc----CceEEEEcCHHH---CCCCcccccEE
Confidence 3349999999999999999886 668999999 88999999999998765 478888877543 22456789999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++..++++......+++.+.++|+|||.++++...
T Consensus 116 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 116 VSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 99999999999999999999999999999988543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=127.22 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=112.5
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHH---hhcCCCCCC
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIEN---NLRHGDLRG 174 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~---n~~~~~~~~ 174 (281)
..+++|+.|+. ..++.+|||||||+|.+++.++... .+|+++|+ +.+++.+++|+.. |++. +
T Consensus 23 ~D~~lL~~~~~--------~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~----~ 90 (260)
T 2ozv_A 23 MDAMLLASLVA--------DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS----A 90 (260)
T ss_dssp CHHHHHHHTCC--------CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTG----G
T ss_pred cHHHHHHHHhc--------ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCc----c
Confidence 46778888764 2457799999999999999999864 58999999 8899999999998 7664 4
Q ss_pred ceEEEEEecCCCCC----CCcCCCCCcEEEEccccCCC------------------CcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 175 SAVVTELTWGDDPD----QDLIQPLPDYVLGSDVIYSE------------------GAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 175 ~i~~~~l~w~~~~~----~~~~~~~fD~Iia~d~iy~~------------------~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++.+...|+.+... ..+...+||+|+++...+.. ..+..+++.+.++|+|+|.+++..
T Consensus 91 ~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 91 RIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp GEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 68888877654311 01335689999987554432 237889999999999999998875
Q ss_pred eeeChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCCcEEEEEEEec
Q 023543 233 ELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCSPRVVVYILVKK 278 (281)
Q Consensus 233 ~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~~~~~i~~~~~k 278 (281)
... ....+++.+.+.|...++....-.+. +.....+....|.
T Consensus 171 ~~~---~~~~~~~~l~~~~~~~~i~~v~~~~~-~~~~~~lv~~~k~ 212 (260)
T 2ozv_A 171 RPQ---SVAEIIAACGSRFGGLEITLIHPRPG-EDAVRMLVTAIKG 212 (260)
T ss_dssp CGG---GHHHHHHHHTTTEEEEEEEEEESSTT-SCCCEEEEEEEET
T ss_pred cHH---HHHHHHHHHHhcCCceEEEEEcCCCC-CCceEEEEEEEeC
Confidence 533 23456777766676555543222222 3345555555553
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-13 Score=114.92 Aligned_cols=120 Identities=16% Similarity=0.203 Sum_probs=93.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|..++.+++.+ .+|+++|+ +++++.+++|+..++.. ++.+...++.+... ..++||
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~---~~~~~D 110 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVAR-----NVTLVEAFAPEGLD---DLPDPD 110 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCT-----TEEEEECCTTTTCT---TSCCCS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEeCChhhhhh---cCCCCC
Confidence 467899999999999999999877 78999999 88999999999998764 67777766533222 226799
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVI 253 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v 253 (281)
+|++....+ ....+++.+.++|+|||.+++...... ..+.+.+.+. .+|.+
T Consensus 111 ~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~l~~~g~~~ 162 (204)
T 3e05_A 111 RVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD--TLTKAVEFLEDHGYMV 162 (204)
T ss_dssp EEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH--HHHHHHHHHHHTTCEE
T ss_pred EEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc--cHHHHHHHHHHCCCce
Confidence 999987764 788999999999999999988765432 2344555555 47643
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=116.02 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=95.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.+++.+++.+.+|+++|+ +++++.+++|++.++.. .++.+...|..+.. ...++||+|
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~----~~v~~~~~d~~~~~---~~~~~~D~v 126 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLS----PRMRAVQGTAPAAL---ADLPLPEAV 126 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEESCTTGGG---TTSCCCSEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC----CCEEEEeCchhhhc---ccCCCCCEE
Confidence 46789999999999999999999889999999 88999999999998765 46777775543211 123579999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc-CCeEEEEec
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK-DFVIGRVEQ 258 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~-~f~v~~i~~ 258 (281)
++...+ ..+ +++.+.++|+|||.+++..... +....+.+.+.+ +|.+..+..
T Consensus 127 ~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l~~~g~~i~~i~~ 179 (204)
T 3njr_A 127 FIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTL--ESETLLTQLHARHGGQLLRIDI 179 (204)
T ss_dssp EECSCC----CHH-HHHHHHHHSCTTCEEEEEECSH--HHHHHHHHHHHHHCSEEEEEEE
T ss_pred EECCcc----cHH-HHHHHHHhcCCCcEEEEEecCc--ccHHHHHHHHHhCCCcEEEEEe
Confidence 977643 455 9999999999999998876543 334445555553 788777743
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-15 Score=136.33 Aligned_cols=103 Identities=15% Similarity=0.200 Sum_probs=87.0
Q ss_pred cccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 119 LLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 119 ~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..++|++|||||||+|++++.+|+.|+ +|+++|.+.+++.|+++++.|++. +++.+..-+..+ .. ...+||
T Consensus 80 ~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~----~~i~~i~~~~~~---~~-lpe~~D 151 (376)
T 4hc4_A 80 AALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLE----DRVHVLPGPVET---VE-LPEQVD 151 (376)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCT----TTEEEEESCTTT---CC-CSSCEE
T ss_pred HhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCC----ceEEEEeeeeee---ec-CCcccc
Confidence 357999999999999999999999998 699999976899999999999987 678888755432 22 236899
Q ss_pred EEEE---ccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 198 YVLG---SDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 198 ~Iia---~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
+||+ ...+.++..++.++....++|+|+|.++
T Consensus 152 vivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 152 AIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp EEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred EEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 9998 5556778899999999999999999765
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-14 Score=123.23 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=90.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +.+++.+++++..++.. ++.+...|..+ ..+.+.+||+|
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----~v~~~~~d~~~---l~~~~~~fD~V 107 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQ-----QVEYVQGDAEQ---MPFTDERFHIV 107 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCC-C---CCSCTTCEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCC-----ceEEEEecHHh---CCCCCCCEEEE
Confidence 46789999999999999999998889999999 88999999999887654 57777765433 23455789999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+++.++++..+...+++.+.++|+|||.+++....
T Consensus 108 ~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 108 TCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 99999999999999999999999999999887543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.3e-14 Score=124.19 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=90.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||||||+|..++.+++. |.+|+++|+ +.+++.+++++..+++. .++.+...|+.+. +.+||+
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~------~~~fD~ 140 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP----RRKEVRIQGWEEF------DEPVDR 140 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCS----SCEEEEECCGGGC------CCCCSE
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEECCHHHc------CCCccE
Confidence 46789999999999999999886 899999999 88999999999988765 5788888776432 578999
Q ss_pred EEEccccCCC---------CcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 199 VLGSDVIYSE---------GAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 199 Iia~d~iy~~---------~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
|++..++++. .....+++.+.++|+|||.+++......
T Consensus 141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred EEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 9999999876 4568999999999999999998876543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-15 Score=121.58 Aligned_cols=130 Identities=18% Similarity=0.116 Sum_probs=94.7
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
++++..+.+.+...+... ...++++|||+|||+|.+++.++..++ +|+++|+ +++++.+++|+..++.. ++.
T Consensus 23 rp~~~~~~~~l~~~l~~~-~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~v~ 96 (189)
T 3p9n_A 23 RPTTDRVRESLFNIVTAR-RDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLS-----GAT 96 (189)
T ss_dssp ---CHHHHHHHHHHHHHH-SCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCS-----CEE
T ss_pred ccCcHHHHHHHHHHHHhc-cCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCC-----ceE
Confidence 455555555554432210 125788999999999999997777765 7999999 88999999999999764 678
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCCC-CcHHHHHHHHHH--hhCCCcEEEEEEeeeC
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYSE-GAVGDLLDTLLQ--LCGTQTTIFLAGELRN 236 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~-~~~~~ll~~l~~--ll~~~g~~~l~~~~r~ 236 (281)
+...|+.+... .+.+.+||+|++..+.+.. .....+++.+.+ +|+|||.+++....+.
T Consensus 97 ~~~~d~~~~~~-~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 97 LRRGAVAAVVA-AGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp EEESCHHHHHH-HCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred EEEccHHHHHh-hccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 88766543211 1225789999987664443 678999999999 9999999998876554
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-14 Score=127.12 Aligned_cols=107 Identities=10% Similarity=-0.009 Sum_probs=91.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..+++. .++.+...|..+ ..+.+.+||+
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~---~~~~~~~fD~ 188 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRID----DHVRSRVCNMLD---TPFDKGAVTA 188 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECCTTS---CCCCTTCEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC----CceEEEECChhc---CCCCCCCEeE
Confidence 46789999999999999999886 899999999 88999999999998875 578888866543 2245678999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|++.+++++.. ...+++.+.++|+|||.+++.....
T Consensus 189 V~~~~~l~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 189 SWNNESTMYVD-LHDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp EEEESCGGGSC-HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEECCchhhCC-HHHHHHHHHHHcCCCcEEEEEEccc
Confidence 99999998884 9999999999999999998877543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=116.42 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=101.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++++|||+|||+|..+..+++.+ .+|+++|+ +.+++.+++|+..++.......++.+...+.. .......+||
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~fD 104 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT---YQDKRFHGYD 104 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT---SCCGGGCSCS
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc---cccccCCCcC
Confidence 467899999999999999999876 58999999 88999999998876543100125777776542 2223346899
Q ss_pred EEEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEeee----------------------ChhHHHHHHHHHh--cCC
Q 023543 198 YVLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGELR----------------------NDSVLEYFLEAAM--KDF 251 (281)
Q Consensus 198 ~Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~r----------------------~~~~~~~fl~~~~--~~f 251 (281)
+|++..++++.. ....+++.+.++|+|||.++++.... ....+..|+..+. .||
T Consensus 105 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf 184 (217)
T 3jwh_A 105 AATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAY 184 (217)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSE
T ss_pred EEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCc
Confidence 999999999866 45899999999999999766654321 2333445554444 389
Q ss_pred eEEEEecCCCCCCC
Q 023543 252 VIGRVEQTQWHPDY 265 (281)
Q Consensus 252 ~v~~i~~~~~~~~~ 265 (281)
.+....--...+..
T Consensus 185 ~v~~~~~g~~~~~~ 198 (217)
T 3jwh_A 185 NVQFQPIGEADPEV 198 (217)
T ss_dssp EEEECCCSCCCSSS
T ss_pred eEEEEecCCccCCC
Confidence 88777544444443
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=124.25 Aligned_cols=128 Identities=14% Similarity=0.086 Sum_probs=96.6
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++++|||+|||+|.+++.++. .+.+|+++|+ +++++.+++|+..++.. ++.+...+..+.........+||+
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~fD~ 144 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-----NTTFCHDRAETFGQRKDVRESYDI 144 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-----SEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CEEEEeccHHHhcccccccCCccE
Confidence 678999999999999999885 5679999999 88999999999998765 577777655331110011468999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
|++..+ .....+++.+.++|+|||.+++..........+.+.+.+. .+|.+..+..
T Consensus 145 V~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~ 201 (240)
T 1xdz_A 145 VTARAV----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHS 201 (240)
T ss_dssp EEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEecc----CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEE
Confidence 998763 5689999999999999999988755445554555666555 3888776643
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.1e-14 Score=124.02 Aligned_cols=108 Identities=9% Similarity=0.085 Sum_probs=92.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..+..+++. +.+|+++|+ +.+++.+++++..++.. .++.+...++.+ ..+.+.+||+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~---~~~~~~~fD~ 153 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA----DNITVKYGSFLE---IPCEDNSYDF 153 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT----TTEEEEECCTTS---CSSCTTCEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCC----cceEEEEcCccc---CCCCCCCEeE
Confidence 46789999999999999988875 889999999 88999999999888765 468888866543 2345678999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|++.+++++......+++.+.++|+|||.+++.....
T Consensus 154 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 154 IWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 9999999998889999999999999999999887543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-14 Score=116.37 Aligned_cols=126 Identities=19% Similarity=0.197 Sum_probs=95.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..+..++..+.+|+++|+ +.+++.+++|.. ++.+...+..+ ..+...+||+|
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~----------~~~~~~~d~~~---~~~~~~~~D~i 111 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP----------EARWVVGDLSV---DQISETDFDLI 111 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTT---SCCCCCCEEEE
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC----------CCcEEEccccc---CCCCCCceeEE
Confidence 36789999999999999999999999999999 888999987752 34556655433 22345689999
Q ss_pred EEc-cccCCC--CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEecC
Q 023543 200 LGS-DVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQT 259 (281)
Q Consensus 200 ia~-d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~~ 259 (281)
++. +++++. .....+++.+.++|+|+|.+++..........+.+...+. .||.+..+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 112 VSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred EECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecc
Confidence 998 676654 5568999999999999999998876554223344555555 49998888554
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-14 Score=121.42 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=90.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..++.+++.+. +|+++|+ +.+++.+++|+..++.. .++.+...++.+ ..+.+.+||+
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~---~~~~~~~fD~ 117 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA----DRVKGITGSMDN---LPFQNEELDL 117 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECCTTS---CSSCTTCEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCC----CceEEEECChhh---CCCCCCCEEE
Confidence 4678999999999999999998765 9999999 88999999999998876 468888877643 2244578999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|++..++++. ....+++.+.++|+|||.+++....
T Consensus 118 v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 118 IWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp EEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred EEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 9999999988 6899999999999999999988753
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-14 Score=124.38 Aligned_cols=106 Identities=13% Similarity=0.067 Sum_probs=91.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..++.+++.+. +|+++|+ +.+++.+++++..+++. +++.+...|+.+. .+.+.+||+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~---~~~~~~fD~ 117 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ----NRVTGIVGSMDDL---PFRNEELDL 117 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECCTTSC---CCCTTCEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCC----cCcEEEEcChhhC---CCCCCCEEE
Confidence 4688999999999999999998754 8999999 88999999999998775 5788888776432 234578999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|++..++++. ....+++.+.++|+|||.+++....
T Consensus 118 i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 118 IWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp EEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred EEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEee
Confidence 9999999888 7899999999999999999888754
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=127.14 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=87.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc----CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~----g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.+|.+|||||||+|..++.+++. |++|+++|+ +.|++.|++++...+.. .++.+...|..+ ++.++
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~----~~v~~~~~D~~~-----~~~~~ 139 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP----TPVDVIEGDIRD-----IAIEN 139 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS----SCEEEEESCTTT-----CCCCS
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC----ceEEEeeccccc-----ccccc
Confidence 57889999999999999988874 568999999 88999999999887654 468887755432 23367
Q ss_pred CcEEEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 196 PDYVLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 196 fD~Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
||+|++..++++.. ....+++.+.+.|+|||.++++...+.
T Consensus 140 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 140 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred cccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 99999999988743 456799999999999999999876543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-13 Score=120.74 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=95.4
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHH-HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAA-LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a-~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
+...+.+.+...+. ..++.+|||+|||+|..++.++ ..|.+|+++|+ +.+++.+++++...+.. .++.+.
T Consensus 48 a~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~----~~~~~~ 119 (287)
T 1kpg_A 48 AQIAKIDLALGKLG----LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL----RSKRVL 119 (287)
T ss_dssp HHHHHHHHHHTTTT----CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC----SCEEEE
T ss_pred HHHHHHHHHHHHcC----CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCC----CCeEEE
Confidence 33344455544321 3467899999999999999888 57889999999 88999999999877654 467777
Q ss_pred EEecCCCCCCCcCCCCCcEEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 180 ELTWGDDPDQDLIQPLPDYVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 180 ~l~w~~~~~~~~~~~~fD~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
..++.+ ++ .+||+|++..++++. .....+++.+.++|+|||.+++......
T Consensus 120 ~~d~~~-----~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 120 LAGWEQ-----FD-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp ESCGGG-----CC-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred ECChhh-----CC-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 766532 22 789999999999886 7899999999999999999998876543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-14 Score=123.31 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=97.3
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
++.+..+.+.+...+. ..++.+|||+|||+|..+..+++. +.+|+++|+ +.+++.+++++..+ .++.
T Consensus 37 ~~~~~~~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~ 105 (266)
T 3ujc_A 37 SSGGLEATKKILSDIE----LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-------NKII 105 (266)
T ss_dssp STTHHHHHHHHTTTCC----CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-------TTEE
T ss_pred ccchHHHHHHHHHhcC----CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-------CCeE
Confidence 5556666666655422 346789999999999999999886 889999999 88899998876554 3677
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
+...|+.+. .+.+.+||+|++..++++. .....+++.+.++|+|||.+++.....
T Consensus 106 ~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 106 FEANDILTK---EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp EEECCTTTC---CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEECccccC---CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 777665432 3456789999999999998 899999999999999999999887543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-14 Score=120.65 Aligned_cols=101 Identities=8% Similarity=-0.033 Sum_probs=83.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..+..+++.+.+|+++|+ +.+++.+++++..++. ++.+...+..+. .+. .+||+|
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~---~~~-~~fD~v 105 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL------KPRLACQDISNL---NIN-RKFDLI 105 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC------CCEEECCCGGGC---CCS-CCEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC------CeEEEecccccC---Ccc-CCceEE
Confidence 36789999999999999999999999999999 8899999999887653 355665554322 122 689999
Q ss_pred EEcc-ccCCC---CcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGSD-VIYSE---GAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~d-~iy~~---~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++.. ++++. .....+++.+.++|+|||.+++.
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred EEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9997 88876 67889999999999999998874
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-13 Score=112.36 Aligned_cols=135 Identities=11% Similarity=0.065 Sum_probs=102.6
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE 180 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~ 180 (281)
....+.+++...+. ..++.+|||+|||+|..++.+++.+.+|+++|+ +.+++.+++|+..++.. ++.+..
T Consensus 19 ~~~~~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~~~~ 89 (183)
T 2yxd_A 19 TKEEIRAVSIGKLN----LNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIK-----NCQIIK 89 (183)
T ss_dssp CCHHHHHHHHHHHC----CCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCC-----SEEEEE
T ss_pred CHHHHHHHHHHHcC----CCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-----cEEEEE
Confidence 34455555554432 346789999999999999999997789999999 88999999999998764 677777
Q ss_pred EecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEe
Q 023543 181 LTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 181 l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
.++.+ .+.+.+||+|++..+ .....+++.+.++ |+|.+++..... .....+.+.+. .+|.++.+.
T Consensus 90 ~d~~~----~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~--~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 90 GRAED----VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVL--ENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp SCHHH----HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCH--HHHHHHHHHHHHTTCEEEEEE
T ss_pred CCccc----cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEeccc--ccHHHHHHHHHHcCCeEEEEE
Confidence 66543 233468999999888 6788999999998 999988876433 33455666665 378877763
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-14 Score=117.90 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=88.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..+..++..+.+|+++|+ +.+++.+++++..++.. ++.+...++.+. .+ +.+||+|
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~~---~~-~~~~D~v 101 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLD-----NLHTRVVDLNNL---TF-DRQYDFI 101 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCT-----TEEEEECCGGGC---CC-CCCEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCC-----CcEEEEcchhhC---CC-CCCceEE
Confidence 46789999999999999999998999999999 88999999999888764 577777665432 22 5789999
Q ss_pred EEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
++..++++.. ....+++.+.++|+|||.+++...
T Consensus 102 ~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 102 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 9999998755 889999999999999999777653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-14 Score=126.39 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=92.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||||||+|..+..++..|.+|+++|+ +.+++.+++++..++.. .++.+...++.+.. .+.+.+||+|
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~--~~~~~~fD~v 140 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVS----DNMQFIHCAAQDVA--SHLETPVDLI 140 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCG----GGEEEEESCGGGTG--GGCSSCEEEE
T ss_pred CCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC----cceEEEEcCHHHhh--hhcCCCceEE
Confidence 35789999999999999999999999999999 88999999999988764 47888887764332 1345789999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++..++++..+...+++.+.++|+|||.+++....
T Consensus 141 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 141 LFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp EEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 99999999899999999999999999999988753
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=116.85 Aligned_cols=101 Identities=15% Similarity=0.108 Sum_probs=82.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..+..++..+.+|+++|+ +.+++.+++++. .++.+...+..+ .... .+||+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~d~~~---~~~~-~~fD~v 110 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP---------KEFSITEGDFLS---FEVP-TSIDTI 110 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC---------TTCCEESCCSSS---CCCC-SCCSEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC---------CceEEEeCChhh---cCCC-CCeEEE
Confidence 36789999999999999999999999999999 889999988765 134455544432 2223 789999
Q ss_pred EEccccCCCCcHHH--HHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGAVGD--LLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~~~~--ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++..++++...... +++.+.++|+|||.+++....
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 99999999877766 999999999999999998654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=115.59 Aligned_cols=121 Identities=11% Similarity=0.143 Sum_probs=94.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..+..+++.+.+|+++|+ +.+++.++++ . .++.+...+ ..+.+.+||+|
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~-----~~v~~~~~d------~~~~~~~~D~v 79 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-----F-----DSVITLSDP------KEIPDNSVDFI 79 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH-----C-----TTSEEESSG------GGSCTTCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh-----C-----CCcEEEeCC------CCCCCCceEEE
Confidence 46779999999999999999987779999999 8889999888 1 245555533 23445789999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChh----------HHHHHHHHHhcCCeEEEEec
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDS----------VLEYFLEAAMKDFVIGRVEQ 258 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~----------~~~~fl~~~~~~f~v~~i~~ 258 (281)
+++.++++......+++.+.++|+|||.+++....+... ..+.+.+.+. ||.+..+..
T Consensus 80 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf~~~~~~~ 147 (170)
T 3i9f_A 80 LFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NFVVEKRFN 147 (170)
T ss_dssp EEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TEEEEEEEC
T ss_pred EEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-CcEEEEccC
Confidence 999999999999999999999999999999886543310 1234555556 998877754
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=119.38 Aligned_cols=168 Identities=13% Similarity=-0.000 Sum_probs=106.7
Q ss_pred HHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHH----------hhcCC--
Q 023543 104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIEN----------NLRHG-- 170 (281)
Q Consensus 104 ~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~----------n~~~~-- 170 (281)
..+.+|+..... ..++.+|||+|||+|..+..+|..|.+|+++|+ +.|++.++++... ++...
T Consensus 54 ~~l~~~~~~~~~----~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 129 (252)
T 2gb4_A 54 QLLKKHLDTFLK----GQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFK 129 (252)
T ss_dssp HHHHHHHHHHHT----TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred HHHHHHHHHhcc----CCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccc
Confidence 356666654211 136789999999999999999999999999999 8899998765431 00000
Q ss_pred CCCCceEEEEEecCCCCCCCcCC-CCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEE-eeeC-----h---h
Q 023543 171 DLRGSAVVTELTWGDDPDQDLIQ-PLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAG-ELRN-----D---S 238 (281)
Q Consensus 171 ~~~~~i~~~~l~w~~~~~~~~~~-~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~-~~r~-----~---~ 238 (281)
....++.+...|.. +....+ .+||+|++..++++ ......+++.+.++|+|||++++.. .... + -
T Consensus 130 ~~~~~i~~~~~D~~---~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~ 206 (252)
T 2gb4_A 130 SSSGSISLYCCSIF---DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYV 206 (252)
T ss_dssp ETTSSEEEEESCTT---TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCC
T ss_pred cCCCceEEEECccc---cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCC
Confidence 00135777775543 222222 68999998877765 3457789999999999999986443 2110 0 0
Q ss_pred HHHHHHHHHhcCCeEEEEecCCC-C-----CCCCCCcEEEEEEEec
Q 023543 239 VLEYFLEAAMKDFVIGRVEQTQW-H-----PDYCSPRVVVYILVKK 278 (281)
Q Consensus 239 ~~~~fl~~~~~~f~v~~i~~~~~-~-----~~~~~~~~~i~~~~~k 278 (281)
..+...+.+..+|++..+..... . .....-.-.+|.++|+
T Consensus 207 ~~~el~~~l~~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (252)
T 2gb4_A 207 PSAELKRLFGTKCSMQCLEEVDALEERHKAWGLDYLFEKLYLLTEK 252 (252)
T ss_dssp CHHHHHHHHTTTEEEEEEEEEECCCGGGTTTTCSCCEEEEEEEEEC
T ss_pred CHHHHHHHhhCCeEEEEEeccccchhhhhhcCcchhhheeEEEecC
Confidence 12334444555688877743321 1 1223334568888774
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=121.09 Aligned_cols=124 Identities=13% Similarity=0.070 Sum_probs=99.8
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
.++...+.+.+...+. ..++.+|||+|||+|..+..+++ .+.+|+++|+ +.+++.+++++..++.. .++.
T Consensus 43 ~~~~~~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~~~ 114 (273)
T 3bus_A 43 DDATDRLTDEMIALLD----VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA----NRVT 114 (273)
T ss_dssp HHHHHHHHHHHHHHSC----CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCT----TTEE
T ss_pred HHHHHHHHHHHHHhcC----CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCC----cceE
Confidence 3445555566655422 34678999999999999998887 5789999999 88999999999988765 4688
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+...++.+ ..+.+.+||+|++.+++++......+++.+.++|+|||.+++....
T Consensus 115 ~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 115 FSYADAMD---LPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp EEECCTTS---CCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred EEECcccc---CCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 88866543 2244578999999999999988999999999999999999888754
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-13 Score=112.34 Aligned_cols=127 Identities=17% Similarity=0.119 Sum_probs=95.1
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
++ +|||+|||+|..+..+++.|.+|+++|+ +.+++.+++++..++. ++.+...+..+ ..+.+.+||+|+
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~---~~~~~~~fD~v~ 99 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV------KITTVQSNLAD---FDIVADAWEGIV 99 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC------CEEEECCBTTT---BSCCTTTCSEEE
T ss_pred CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC------ceEEEEcChhh---cCCCcCCccEEE
Confidence 45 9999999999999999999999999999 8899999999988754 36666655432 223456899999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh--------------hHHHHHHHHHhcCCeEEEEecC
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND--------------SVLEYFLEAAMKDFVIGRVEQT 259 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~--------------~~~~~fl~~~~~~f~v~~i~~~ 259 (281)
++...+.......+++.+.++|+|||.+++....... -..+.+.+.+. ||++..+...
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-Gf~v~~~~~~ 171 (202)
T 2kw5_A 100 SIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP-SLNWLIANNL 171 (202)
T ss_dssp EECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS-SSCEEEEEEE
T ss_pred EEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc-CceEEEEEEE
Confidence 9755444567889999999999999999888643211 01233444445 9988777443
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-13 Score=113.81 Aligned_cols=129 Identities=16% Similarity=0.018 Sum_probs=95.4
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++.+|||||||+|.+++.+++. +.+|+++|+ +.+++.+++|+..++.. ++.+...++.+ ....+.+.+||+
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~-----~v~~~~~d~~~-~~~~~~~~~~D~ 114 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-----NIKLLWVDGSD-LTDYFEDGEIDR 114 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-----SEEEEECCSSC-GGGTSCTTCCSE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCC-----CEEEEeCCHHH-HHhhcCCCCCCE
Confidence 4779999999999999999886 568999999 88999999999998764 68888876643 111134568999
Q ss_pred EEEccccCCCC--------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 199 VLGSDVIYSEG--------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 199 Iia~d~iy~~~--------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
|++.....+.. ....+++.+.++|+|||.+++.... ....+...+.+. .+|.+..+..
T Consensus 115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~ 181 (214)
T 1yzh_A 115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN--RGLFEYSLVSFSQYGMKLNGVWL 181 (214)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC--HHHHHHHHHHHHHHTCEEEEEES
T ss_pred EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC--HHHHHHHHHHHHHCCCeeeeccc
Confidence 99875432221 2468999999999999999887542 222333444444 4898877754
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-13 Score=118.21 Aligned_cols=130 Identities=13% Similarity=0.013 Sum_probs=97.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
++.+|||+|||+|..+..++..+ .+|+++|+ +.+++.+++++..++. .++.+...++.+. ...+.+||+|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~---~~~~~~fD~v 150 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-----RVRNYFCCGLQDF---TPEPDSYDVI 150 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-----GEEEEEECCGGGC---CCCSSCEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC-----ceEEEEEcChhhc---CCCCCCEEEE
Confidence 57899999999999999888764 48999999 8899999999877642 2566777665432 2234579999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEeeeCh------------hHHHHHHHHHh-cCCeEEEEecC
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGELRND------------SVLEYFLEAAM-KDFVIGRVEQT 259 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~r~~------------~~~~~fl~~~~-~~f~v~~i~~~ 259 (281)
++..++++... ...+++.+.++|+|||.+++....... ...+.+.+.+. .||.+..+...
T Consensus 151 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 151 WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 99999988665 569999999999999999987643210 01234555555 48998877654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=116.10 Aligned_cols=124 Identities=17% Similarity=0.046 Sum_probs=96.2
Q ss_pred CCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 123 GKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
+.+|||+|||+|..+..++..|.+|+++|+ +.+++.++++. .++.+...++.+ ..+.+.+||+|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~---~~~~~~~fD~v~~ 108 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH----------PSVTFHHGTITD---LSDSPKRWAGLLA 108 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC----------TTSEEECCCGGG---GGGSCCCEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC----------CCCeEEeCcccc---cccCCCCeEEEEe
Confidence 789999999999999999999999999999 88999988771 245666655432 2344678999999
Q ss_pred ccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEeeeCh-------------hHHHHHHHHHh-cCCeEEEEecC
Q 023543 202 SDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGELRND-------------SVLEYFLEAAM-KDFVIGRVEQT 259 (281)
Q Consensus 202 ~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~r~~-------------~~~~~fl~~~~-~~f~v~~i~~~ 259 (281)
..++++.. ....+++.+.++|+|||.+++....... -..+.+.+.+. .||.+..+...
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 182 (203)
T 3h2b_A 109 WYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWD 182 (203)
T ss_dssp ESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEEC
T ss_pred hhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEec
Confidence 99998864 8999999999999999999988744321 11234455555 49998888653
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-14 Score=121.27 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=85.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..+..++..+.+|+++|+ +.+++.++++... ++.+...+..+. ..+.+||+|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~---------~v~~~~~d~~~~----~~~~~fD~v 107 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD---------GITYIHSRFEDA----QLPRRYDNI 107 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS---------CEEEEESCGGGC----CCSSCEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC---------CeEEEEccHHHc----CcCCcccEE
Confidence 46789999999999999999998999999999 8899999877432 366666554332 245789999
Q ss_pred EEccccCCCCcHHHHHHHHH-HhhCCCcEEEEEEeee
Q 023543 200 LGSDVIYSEGAVGDLLDTLL-QLCGTQTTIFLAGELR 235 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~-~ll~~~g~~~l~~~~r 235 (281)
++..++++..+...+++.+. ++|+|||.+++.....
T Consensus 108 ~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 108 VLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred EEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 99999999888999999999 9999999999887543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-14 Score=124.92 Aligned_cols=125 Identities=17% Similarity=0.226 Sum_probs=94.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++++|||+|||+|.+++.+++.|+ +|+++|+ +.+++.+++|+..|+.. +++.+...|..+.. .+.+||+
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~----~~v~~~~~D~~~~~----~~~~fD~ 195 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE----DRMSAYNMDNRDFP----GENIADR 195 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT----TTEEEECSCTTTCC----CCSCEEE
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEEECCHHHhc----ccCCccE
Confidence 3588999999999999999999887 5999999 88999999999999876 45777775544322 2578999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC----hhHHHHHHHHHh-cCCeEEEEe
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN----DSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~----~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
|++... .....+++.+.++|+|||.+++...... ....+.+.+.+. .||.+..+.
T Consensus 196 Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~ 255 (278)
T 2frn_A 196 ILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN 255 (278)
T ss_dssp EEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred EEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEee
Confidence 988433 2336788889999999999888765532 233444555555 488887743
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.52 E-value=9e-14 Score=119.25 Aligned_cols=101 Identities=22% Similarity=0.164 Sum_probs=84.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++++|||+|||+|..+..+++.+. +|+++|+ +.+++.++++...+ ++.+...+..+. .+.+.+||+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~d~~~~---~~~~~~fD~ 110 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT--------GITYERADLDKL---HLPQDSFDL 110 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS--------SEEEEECCGGGC---CCCTTCEEE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC--------CceEEEcChhhc---cCCCCCceE
Confidence 4678999999999999999999888 9999999 88999988775432 466666555332 234578999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|++..++++......+++.+.++|+|||.++++.
T Consensus 111 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 111 AYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence 9999999998899999999999999999998875
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=118.78 Aligned_cols=102 Identities=9% Similarity=0.017 Sum_probs=86.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..+..++..|.+|+++|+ +.+++.++++.. ..++.+...+..+ ..+.+.+||+|
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~---~~~~~~~fD~v 120 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGE--------GPDLSFIKGDLSS---LPFENEQFEAI 120 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTC--------BTTEEEEECBTTB---CSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcc--------cCCceEEEcchhc---CCCCCCCccEE
Confidence 46789999999999999999999999999999 888998887741 1367777766543 22446789999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
++..++++......+++.+.++|+|||.++++..
T Consensus 121 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 121 MAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp EEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence 9999999999999999999999999999988864
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-13 Score=109.22 Aligned_cols=123 Identities=7% Similarity=-0.007 Sum_probs=90.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC--CC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ--PL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~--~~ 195 (281)
.++.+|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..++.. .++ +...+..+ .+.. ++
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~~-~~~~d~~~----~~~~~~~~ 94 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS----DRI-AVQQGAPR----AFDDVPDN 94 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT----TSE-EEECCTTG----GGGGCCSC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC----CCE-EEecchHh----hhhccCCC
Confidence 46789999999999999998886 668999999 88999999999988764 356 55533221 2233 78
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
||+|++..++++ ..+++.+.++|+|||.+++....... ...+...+. .++.+..+..
T Consensus 95 ~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 152 (178)
T 3hm2_A 95 PDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVES--EQMLWALRKQFGGTISSFAI 152 (178)
T ss_dssp CSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHHH--HHHHHHHHHHHCCEEEEEEE
T ss_pred CCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecccc--HHHHHHHHHHcCCeeEEEEe
Confidence 999999988876 77899999999999999887654432 223344443 3676666533
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=120.65 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=81.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC--CCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD--QDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~--~~~~~~~fD 197 (281)
.++.+|||||||+|.+++.+++.|++|+++|+ +.|++.+++|+..+. ...+|.+... ....+.+||
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~-----------v~~~~~~~~~~~~~~~~~~fD 112 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRC-----------VTIDLLDITAEIPKELAGHFD 112 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC-----------CEEEECCTTSCCCGGGTTCCS
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc-----------ceeeeeecccccccccCCCcc
Confidence 56889999999999999999999999999999 889999999876541 2334433221 111246899
Q ss_pred EEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 198 YVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 198 ~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
+|+++.++++ ......+++.+.++| |||.+++++...
T Consensus 113 ~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 113 FVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred EEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 9999998875 356778999999999 999999998753
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-14 Score=117.64 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=95.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-CCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-QDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..+..++..+.+|+++|+ +.+++.++++ . ++.+...+..+... ....+.+||+
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~--------~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA---G--------AGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT---C--------SSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh---c--------ccccchhhHHhhcccccccCCCccE
Confidence 46789999999999999999999999999999 8889999877 1 23344444332211 1123456999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC-----------------------------hhHHHHHHHHHh-
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN-----------------------------DSVLEYFLEAAM- 248 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~-----------------------------~~~~~~fl~~~~- 248 (281)
|+++.+++ ......+++.+.++|+|||.+++...... ....+.+.+.+.
T Consensus 120 v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (227)
T 3e8s_A 120 ICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDM 198 (227)
T ss_dssp EEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHH
T ss_pred EEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHH
Confidence 99999999 78889999999999999999998764210 002355666666
Q ss_pred cCCeEEEEecCCC
Q 023543 249 KDFVIGRVEQTQW 261 (281)
Q Consensus 249 ~~f~v~~i~~~~~ 261 (281)
.||.+..+....+
T Consensus 199 aGf~~~~~~~~~~ 211 (227)
T 3e8s_A 199 AGLRLVSLQEPQH 211 (227)
T ss_dssp TTEEEEEEECCCC
T ss_pred cCCeEEEEecCCC
Confidence 4999999876443
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-14 Score=122.16 Aligned_cols=138 Identities=18% Similarity=0.185 Sum_probs=97.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCC-------------C-----------CC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGD-------------L-----------RG 174 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~-------------~-----------~~ 174 (281)
.++++|||||||+|..++.++..+. +|+++|+ +.+++.+++++..++.... . ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 5778999999999999999998888 8999999 8899999988765421000 0 01
Q ss_pred ce-EEEEEecCCCCC-CCcCCCCCcEEEEccccC----CCCcHHHHHHHHHHhhCCCcEEEEEEeee-------------
Q 023543 175 SA-VVTELTWGDDPD-QDLIQPLPDYVLGSDVIY----SEGAVGDLLDTLLQLCGTQTTIFLAGELR------------- 235 (281)
Q Consensus 175 ~i-~~~~l~w~~~~~-~~~~~~~fD~Iia~d~iy----~~~~~~~ll~~l~~ll~~~g~~~l~~~~r------------- 235 (281)
++ .+...+..+... ......+||+|+++.+++ +......+++.+.++|+|||.+++.....
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 214 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSS 214 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccc
Confidence 25 667766544221 111226899999999998 55678899999999999999998875321
Q ss_pred ChhHHHHHHHHHh-cCCeEEEEec
Q 023543 236 NDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 236 ~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
..-..+.+.+.+. .||.+..+..
T Consensus 215 ~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 215 LPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccCHHHHHHHHHHCCCEEEEEEE
Confidence 0001223445554 4998877754
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-13 Score=116.08 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=86.9
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
++++|||+|||+|..+..+++.+.+|+++|+ +.+++.+++|+..++ .++.+...|..+ ..+.+.+||+|+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~---~~~~~~~~D~v~ 108 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDARK---LSFEDKTFDYVI 108 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCTTS---CCSCTTCEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEECchhc---CCCCCCcEEEEE
Confidence 4789999999999999999999899999999 889999999998875 256777766543 223456899999
Q ss_pred Eccc--cCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 201 GSDV--IYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 201 a~d~--iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+.++ .++......+++.+.++|+|||.+++....
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 109 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp EESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 9999 666667889999999999999999887654
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=116.23 Aligned_cols=119 Identities=18% Similarity=0.275 Sum_probs=91.9
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++++|||+|||+|.+++.++.. +.+|+++|+ +.+++.+++|+..++.. ++.+...++.+.. ...+||+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~----~~~~~D~ 135 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-----NIEPVQSRVEEFP----SEPPFDG 135 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-----SEEEEECCTTTSC----CCSCEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CeEEEecchhhCC----ccCCcCE
Confidence 5789999999999999998875 679999999 88999999999998765 4788887765432 2468999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEe
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVE 257 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~ 257 (281)
|++..+ .....+++.+.++|+|||.+++.........+. .+..+|.+..+.
T Consensus 136 i~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~----~~~~g~~~~~~~ 186 (207)
T 1jsx_A 136 VISRAF----ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIA----LLPEEYQVESVV 186 (207)
T ss_dssp EECSCS----SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHH----TSCTTEEEEEEE
T ss_pred EEEecc----CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHH----HHhcCCceeeee
Confidence 997543 567899999999999999998876544443322 223388776654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-14 Score=118.81 Aligned_cols=119 Identities=10% Similarity=0.062 Sum_probs=92.2
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
|-....+..++..... ..++++|||+|||+|..+..++..+.+|+++|+ +.+++.+++++..+ .++.+
T Consensus 33 ~~~~~~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~ 101 (216)
T 3ofk_A 33 PFERERHTQLLRLSLS----SGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW-------SHISW 101 (216)
T ss_dssp HHHHHHHHHHHHHHTT----TSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC-------SSEEE
T ss_pred HhHHHHHHHHHHHHcc----cCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccC-------CCeEE
Confidence 3334445555544321 245679999999999999999999889999999 88999999887653 26778
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCCcH---HHHHHHHHHhhCCCcEEEEEEe
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAV---GDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~---~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
...+..+.. .+.+||+|++..++++.... ..+++.+.++|+|||.++++..
T Consensus 102 ~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 102 AATDILQFS----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp EECCTTTCC----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEcchhhCC----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 887654432 35789999999999886655 5779999999999999998764
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-13 Score=115.49 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=84.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|..+..++.. +.+|+++|+ +.+++.+++++..++ ++.+...+..+. ... .+||
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~d~~~~---~~~-~~fD 111 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-------KVKYIEADYSKY---DFE-EKYD 111 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-------TEEEEESCTTTC---CCC-SCEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-------CEEEEeCchhcc---CCC-CCce
Confidence 46789999999999999999886 779999999 889999998875542 577777665432 222 6899
Q ss_pred EEEEccccCCCCcHH--HHHHHHHHhhCCCcEEEEEEeee
Q 023543 198 YVLGSDVIYSEGAVG--DLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~--~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
+|++..++++..... .+++.+.++|+|||.++++....
T Consensus 112 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 999999998876554 59999999999999999887543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-14 Score=124.47 Aligned_cols=139 Identities=20% Similarity=0.162 Sum_probs=94.1
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCC------------------------C
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDL------------------------R 173 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~------------------------~ 173 (281)
..++++|||||||+|+..+.++..|+ +|+++|+ +.|++.++++++.+...... .
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 35788999999999998888888887 5999999 88999999987664211000 0
Q ss_pred CceE-EEEEecCCCCCC-CcCCCCCcEEEEccccCC----CCcHHHHHHHHHHhhCCCcEEEEEEeeeC-----------
Q 023543 174 GSAV-VTELTWGDDPDQ-DLIQPLPDYVLGSDVIYS----EGAVGDLLDTLLQLCGTQTTIFLAGELRN----------- 236 (281)
Q Consensus 174 ~~i~-~~~l~w~~~~~~-~~~~~~fD~Iia~d~iy~----~~~~~~ll~~l~~ll~~~g~~~l~~~~r~----------- 236 (281)
.++. +...|..+.... ....++||+|+++.++++ ......+++.+.++|||||.++++.....
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~ 212 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 212 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence 1232 455443331111 112468999999998865 24567888899999999999998863221
Q ss_pred --hhHHHHHHHHHh-cCCeEEEEec
Q 023543 237 --DSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 237 --~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
.-..+.+.+.+. .||.+..+..
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEee
Confidence 002234555555 4899877754
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=121.50 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=86.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..++.+++.|.+|+++|+ +.+++.+++|+..++. ++.+...|..+.. . ..+||+|
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~---~-~~~fD~i 188 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL------NISTALYDINAAN---I-QENYDFI 188 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC------CEEEEECCGGGCC---C-CSCEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC------ceEEEEecccccc---c-cCCccEE
Confidence 47889999999999999999999999999999 8899999999998864 4677776654321 1 5789999
Q ss_pred EEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+++.++++. .....+++.+.++|+|||.+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 189 VSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp EECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999999864 6688999999999999999777654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=126.13 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=91.7
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCC---CCCCceEEEEEecCCCCCC---
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHG---DLRGSAVVTELTWGDDPDQ--- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~---~~~~~i~~~~l~w~~~~~~--- 189 (281)
..++.+|||||||+|..++.+++. +.+|+++|+ +.+++.+++|+..+.... ....++.+...++.+....
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 357889999999999999988874 559999999 889999999998762110 0024688888776542111
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
.+.+.+||+|++..++++..+...+++.+.++|+|||.++++....
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 3456789999999999998899999999999999999999886543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-13 Score=119.76 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=89.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..++.+++. |.+|+++|+ +.+++.+++++..++.. .++.+...++.+. +.+||+
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~------~~~fD~ 158 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN----RSRQVLLQGWEDF------AEPVDR 158 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS----SCEEEEESCGGGC------CCCCSE
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEECChHHC------CCCcCE
Confidence 46789999999999999988876 899999999 88999999999887764 4677777665321 268999
Q ss_pred EEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 199 VLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 199 Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
|++..++++. .....+++.+.++|+|||.+++......
T Consensus 159 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 159 IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp EEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred EEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 9999999886 6899999999999999999998876644
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=119.53 Aligned_cols=119 Identities=21% Similarity=0.207 Sum_probs=95.9
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
...+.+++... ....++.+|||||||+|..+..+++. +.+|+++|+ +.+++.+++++..++.. ++.+.
T Consensus 22 ~~~l~~~l~~~----~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~ 92 (276)
T 3mgg_A 22 AETLEKLLHHD----TVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-----NVKFL 92 (276)
T ss_dssp -CHHHHHHHTT----CCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEE
T ss_pred HHHHHHHHhhc----ccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEE
Confidence 34455555543 22357889999999999999999886 678999999 88999999999988764 67777
Q ss_pred EEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 180 ELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 180 ~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
..|..+ ..+.+.+||+|+++.++++..+...+++.+.++|+|||.+++...
T Consensus 93 ~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 93 QANIFS---LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp ECCGGG---CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Eccccc---CCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 766543 223457899999999999999999999999999999999988753
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-13 Score=110.66 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=99.8
Q ss_pred HHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEe
Q 023543 104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELT 182 (281)
Q Consensus 104 ~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~ 182 (281)
..+..++..... ..++.+|||+|||+|..++.+++.+.+|+++|+ +.+++.+++|+..++.. .++.+...+
T Consensus 19 ~~~~~~~~~~~~----~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~----~~~~~~~~d 90 (192)
T 1l3i_A 19 MEVRCLIMCLAE----PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLG----DNVTLMEGD 90 (192)
T ss_dssp HHHHHHHHHHHC----CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC----TTEEEEESC
T ss_pred HHHHHHHHHhcC----CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCC----cceEEEecC
Confidence 344455544322 356889999999999999999988889999999 88999999999988763 367777766
Q ss_pred cCCCCCCCcCC-CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEE
Q 023543 183 WGDDPDQDLIQ-PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRV 256 (281)
Q Consensus 183 w~~~~~~~~~~-~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i 256 (281)
+.+. +.. .+||+|++..++ .....+++.+.++|+|||.+++..... .....+.+.+. .+|.++.+
T Consensus 91 ~~~~----~~~~~~~D~v~~~~~~---~~~~~~l~~~~~~l~~gG~l~~~~~~~--~~~~~~~~~l~~~g~~~~~~ 157 (192)
T 1l3i_A 91 APEA----LCKIPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAILL--ETKFEAMECLRDLGFDVNIT 157 (192)
T ss_dssp HHHH----HTTSCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECBH--HHHHHHHHHHHHTTCCCEEE
T ss_pred HHHh----cccCCCCCEEEECCch---HHHHHHHHHHHHhcCCCcEEEEEecCc--chHHHHHHHHHHCCCceEEE
Confidence 5331 122 479999988765 356899999999999999988876543 22344555555 36765444
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.3e-14 Score=121.82 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=85.4
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEec
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w 183 (281)
.+.++|... ...+++|||||||+|..+..++..+.+|+++|+ +.|++.+++ ..++.+...+.
T Consensus 28 ~l~~~l~~~------~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~-----------~~~v~~~~~~~ 90 (257)
T 4hg2_A 28 ALFRWLGEV------APARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR-----------HPRVTYAVAPA 90 (257)
T ss_dssp HHHHHHHHH------SSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC-----------CTTEEEEECCT
T ss_pred HHHHHHHHh------cCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh-----------cCCceeehhhh
Confidence 356777654 234679999999999999999999999999999 788876642 13577777554
Q ss_pred CCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 184 GDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 184 ~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
. +..+.+.+||+|+++.++++. ..+.+++.+.++|||||.+.+....
T Consensus 91 e---~~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 91 E---DTGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp T---CCCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred h---hhcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECC
Confidence 3 334567899999999999775 4788999999999999998766543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-13 Score=122.70 Aligned_cols=164 Identities=13% Similarity=0.151 Sum_probs=111.9
Q ss_pred eEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhH
Q 023543 79 SLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDR 155 (281)
Q Consensus 79 ~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~ 155 (281)
.+.+...++.++... +...+..+.+.+.. ..+++|||||||+|.+++.+++.+ .+|+++|+ +.+
T Consensus 166 ~~~~~~~~gvf~~~~-----~d~~~~~ll~~l~~--------~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~ 232 (343)
T 2pjd_A 166 GLTVKTLPGVFSRDG-----LDVGSQLLLSTLTP--------HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPA 232 (343)
T ss_dssp TEEEEECTTCTTSSS-----CCHHHHHHHHHSCT--------TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHH
T ss_pred ceEEEecCCccCCCC-----CcHHHHHHHHhcCc--------CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHH
Confidence 355666666654222 23445555555421 246799999999999999999876 47999999 789
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-----CCcHHHHHHHHHHhhCCCcEEEE
Q 023543 156 LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS-----EGAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 156 l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~-----~~~~~~ll~~l~~ll~~~g~~~l 230 (281)
++.+++|+..|+.. +.+.. ++..+. .+.+||+|+++.++++ ......+++.+.++|+|||.+++
T Consensus 233 l~~a~~~~~~~~~~------~~~~~---~d~~~~--~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i 301 (343)
T 2pjd_A 233 VEASRATLAANGVE------GEVFA---SNVFSE--VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301 (343)
T ss_dssp HHHHHHHHHHTTCC------CEEEE---CSTTTT--CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHhCCC------CEEEE---cccccc--ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 99999999998754 33433 333222 2568999999988764 34568899999999999999988
Q ss_pred EEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCCcEEEEEEEec
Q 023543 231 AGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCSPRVVVYILVKK 278 (281)
Q Consensus 231 ~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~~~~~i~~~~~k 278 (281)
......+ ...+++.....+.. +. ...++.||...|.
T Consensus 302 ~~~~~~~--~~~~l~~~f~~~~~--~~--------~~~gf~v~~~~k~ 337 (343)
T 2pjd_A 302 VANAFLP--YPDVLDETFGFHEV--IA--------QTGRFKVYRAIMT 337 (343)
T ss_dssp EEETTSS--HHHHHHHHHSCCEE--EE--------ECSSEEEEEEEC-
T ss_pred EEcCCCC--cHHHHHHhcCceEE--Ee--------eCCCEEEEEEEeC
Confidence 7654332 23345554444432 22 3568888888664
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.4e-14 Score=118.47 Aligned_cols=111 Identities=18% Similarity=0.110 Sum_probs=85.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC-Cc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL-PD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~-fD 197 (281)
.++++|||+|||+|.+++.++..++ +|+++|+ +++++.+++|+..++.. ..++.+...|..+... .+.+.+ ||
T Consensus 52 ~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~v~~~~~d~~~~~~-~~~~~~~fD 127 (201)
T 2ift_A 52 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS---SEQAEVINQSSLDFLK-QPQNQPHFD 127 (201)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC---TTTEEEECSCHHHHTT-SCCSSCCEE
T ss_pred cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC---ccceEEEECCHHHHHH-hhccCCCCC
Confidence 3688999999999999998777665 8999999 88999999999998762 0257777655432111 112457 99
Q ss_pred EEEEccccCCCCcHHHHHHHH--HHhhCCCcEEEEEEeeeC
Q 023543 198 YVLGSDVIYSEGAVGDLLDTL--LQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l--~~ll~~~g~~~l~~~~r~ 236 (281)
+|++..+ |.....+.+++.+ .++|+|||.++++.....
T Consensus 128 ~I~~~~~-~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 128 VVFLDPP-FHFNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp EEEECCC-SSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred EEEECCC-CCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 9998766 6677888899988 557999999998876554
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=113.48 Aligned_cols=132 Identities=15% Similarity=0.085 Sum_probs=94.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++++|||+|||+|..++.+++. ..+|+++|+ +.+++.+++|+..++.. .++.+...|..+... ..+.+|
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~--~~~~~f 94 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI----DRVTLIKDGHQNMDK--YIDCPV 94 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG----GGEEEECSCGGGGGG--TCCSCE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCeEEEECCHHHHhh--hccCCc
Confidence 46789999999999999988875 258999999 88999999999998763 367777766433211 234689
Q ss_pred cEEEEccccCC---------CCcHHHHHHHHHHhhCCCcEEEEEEeeeC------hhHHHHHHHHHh-cCCeEEEEec
Q 023543 197 DYVLGSDVIYS---------EGAVGDLLDTLLQLCGTQTTIFLAGELRN------DSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 197 D~Iia~d~iy~---------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~------~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
|+|++...++. ......+++.+.++|+|||.+++...... ......|+..+. .+|.+.....
T Consensus 95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~ 172 (197)
T 3eey_A 95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDF 172 (197)
T ss_dssp EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEE
T ss_pred eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEe
Confidence 99997754422 12346799999999999999888753321 223444554444 3677776653
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-13 Score=121.69 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=85.4
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..++++|||||||+|.+++.+++.|+ +|+++|++++++.+++|++.|+.. .++.+...+..+ ..+...+||+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~----~~i~~~~~d~~~---~~~~~~~~D~ 134 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLE----DTITLIKGKIEE---VHLPVEKVDV 134 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCT----TTEEEEESCTTT---SCCSCSCEEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCC----CcEEEEEeeHHH---hcCCCCcEEE
Confidence 46789999999999999999999886 899999955999999999999874 478888765443 2344568999
Q ss_pred EEEccc---cCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 199 VLGSDV---IYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 199 Iia~d~---iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
|++..+ +.+....+.+++.+.++|+|||.++
T Consensus 135 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 135 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 998774 4556778899999999999999987
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=111.56 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=90.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+.+|||||||+|..++.+|+. +.+|+++|+ +.+++.+++|+..++.. ++.+...|..+ ....+.+..||.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-----nv~~~~~d~~~-l~~~~~~~~~d~ 111 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-----NVKLLNIDADT-LTDVFEPGEVKR 111 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-----SEEEECCCGGG-HHHHCCTTSCCE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-----CEEEEeCCHHH-HHhhcCcCCcCE
Confidence 5679999999999999999885 678999999 88999999999988764 67777766543 111134567999
Q ss_pred EEEccccCCCC--------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEe
Q 023543 199 VLGSDVIYSEG--------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 199 Iia~d~iy~~~--------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
|+......+.. ..+.+++.+.++|+|||.+++..... ...+..++.+. .+|....+.
T Consensus 112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~--~~~~~~~~~~~~~g~~~~~~~ 177 (213)
T 2fca_A 112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR--GLFEYSLKSFSEYGLLLTYVS 177 (213)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH--HHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCcccccc
Confidence 88753322211 14789999999999999998875432 22222334443 378766654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=117.41 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=88.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..+..++..+.+|+++|+ +.+++.+++++ .+.. .++.+...++.+ ..+.+.+||+|
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~-----~~~~~~~~d~~~---~~~~~~~fD~v 108 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVD-----RKVQVVQADARA---IPLPDESVHGV 108 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSC-----TTEEEEESCTTS---CCSCTTCEEEE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccC-----CceEEEEccccc---CCCCCCCeeEE
Confidence 46789999999999999999988999999999 88999999887 3222 367787766543 22445789999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
++..++++..+...+++.+.++|+|||.+++.....
T Consensus 109 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (263)
T 2yqz_A 109 IVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQA 144 (263)
T ss_dssp EEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EECCchhhcCCHHHHHHHHHHHCCCCcEEEEEecCC
Confidence 999999998889999999999999999988874433
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.9e-13 Score=112.72 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=80.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..+..+++. .+|+++|+ +.+++.+++|+..++. ++.+...+..+. .. ..+||+|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~---~~-~~~fD~v 100 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNR------HVDFWVQDMREL---EL-PEPVDAI 100 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTC------CCEEEECCGGGC---CC-SSCEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCC------ceEEEEcChhhc---CC-CCCcCEE
Confidence 35689999999999999998888 89999999 8899999999887652 466666554332 12 2689999
Q ss_pred EEcc-ccCCC---CcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGSD-VIYSE---GAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~d-~iy~~---~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++.. ++++. .....+++.+.++|+|||.+++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 101 TILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9864 77664 56788999999999999998873
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=118.47 Aligned_cols=108 Identities=16% Similarity=0.101 Sum_probs=84.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||||||+|..+..+++.|.+|+++|+ +.+++.+++++..++... ..++.+...|..+.. + ..+||+|
T Consensus 81 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~--~~~v~~~~~d~~~~~---~-~~~fD~v 154 (299)
T 3g2m_A 81 PVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADV--RDRCTLVQGDMSAFA---L-DKRFGTV 154 (299)
T ss_dssp CCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHH--HTTEEEEECBTTBCC---C-SCCEEEE
T ss_pred CCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhccccc--ccceEEEeCchhcCC---c-CCCcCEE
Confidence 34569999999999999999999999999999 889999999988765310 026788887765421 2 5789988
Q ss_pred EEc-cccCCCC--cHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGS-DVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~-d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+++ .++++.. ....+++.+.++|+|||.+++....
T Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 155 VISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp EECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 865 5555543 5789999999999999999887543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.3e-14 Score=123.61 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=86.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||||||+|..++.++..|++|+++|+ +.+++.+++|+..+..... ..++.+...++.+.....+.+.+||+|
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~fD~V 134 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPA-FDKWVIEEANWLTLDKDVPAGDGFDAV 134 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHH-HHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccc-cceeeEeecChhhCccccccCCCeEEE
Confidence 46789999999999999999999999999999 8899999998755432200 024555665543211001345789999
Q ss_pred EEc-cccCCCCc-------HHHHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGS-DVIYSEGA-------VGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~-d~iy~~~~-------~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
++. .++++... ...+++.+.++|+|||.+++...
T Consensus 135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 998 88888776 99999999999999999988754
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.7e-13 Score=113.93 Aligned_cols=129 Identities=9% Similarity=-0.038 Sum_probs=96.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..+..++..+ .+|+++|+ +.+++.+++++..+ .++.+...++.+. .+.+.+||+
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~---~~~~~~fD~ 161 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMETA---TLPPNTYDL 161 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-------SEEEEEESCGGGC---CCCSSCEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-------CceEEEEccHHHC---CCCCCCeEE
Confidence 467899999999999999888764 47999999 88999999887654 2577777665432 234568999
Q ss_pred EEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEeeeCh-------------hHHHHHHHHHh-cCCeEEEEecC
Q 023543 199 VLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGELRND-------------SVLEYFLEAAM-KDFVIGRVEQT 259 (281)
Q Consensus 199 Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-------------~~~~~fl~~~~-~~f~v~~i~~~ 259 (281)
|++..++++. .....+++.+.++|+|||.+++....... ...+.+.+.+. .||.+..+...
T Consensus 162 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 238 (254)
T 1xtp_A 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence 9999999887 56899999999999999999988642110 01233444454 49998777543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-14 Score=116.01 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=93.3
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
+++..+.+++...+. ...++++|||+|||+|..++.+++.+ .+|+++|+ +.+++.+++|+..++.. .++.+
T Consensus 26 p~~~~~~~~~~~~l~---~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~~~~ 98 (187)
T 2fhp_A 26 PTTDKVKESIFNMIG---PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP----EKFEV 98 (187)
T ss_dssp CCCHHHHHHHHHHHC---SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG----GGEEE
T ss_pred cCHHHHHHHHHHHHH---hhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC----cceEE
Confidence 445555555554432 12478899999999999999888776 48999999 88999999999998764 46788
Q ss_pred EEEecCCCCCC-CcCCCCCcEEEEccccCCCCcHHHHHHHH--HHhhCCCcEEEEEEeee
Q 023543 179 TELTWGDDPDQ-DLIQPLPDYVLGSDVIYSEGAVGDLLDTL--LQLCGTQTTIFLAGELR 235 (281)
Q Consensus 179 ~~l~w~~~~~~-~~~~~~fD~Iia~d~iy~~~~~~~ll~~l--~~ll~~~g~~~l~~~~r 235 (281)
...|+.+.... ...+.+||+|++..+ |.....+.+++.+ .++|+|||.+++.....
T Consensus 99 ~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 99 RKMDANRALEQFYEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred EECcHHHHHHHHHhcCCCCCEEEECCC-CCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 87665431110 011468999998766 6666778888888 77899999998876644
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=123.83 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=87.7
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..++++|||+|||+|.+++.+++.|+ +|+++|++++++.+++|+..|+.. +++.+...++.+. .++..+||+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~----~~v~~~~~d~~~~---~~~~~~fD~ 136 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLD----HVVTIIKGKVEEV---ELPVEKVDI 136 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCT----TTEEEEESCTTTC---CCSSSCEEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCC----CcEEEEECcHHHc---cCCCCceEE
Confidence 46889999999999999999999877 899999966999999999999876 5688888776543 344578999
Q ss_pred EEEccc---cCCCCcHHHHHHHHHHhhCCCcEEEE
Q 023543 199 VLGSDV---IYSEGAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 199 Iia~d~---iy~~~~~~~ll~~l~~ll~~~g~~~l 230 (281)
|++..+ +.+....+.+++.+.++|+|||.++.
T Consensus 137 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 137 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 999665 34468899999999999999999753
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=116.64 Aligned_cols=107 Identities=15% Similarity=0.120 Sum_probs=84.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++++|||+|||+|.+++.++..++ +|+++|+ +.+++.+++|+..++.. ++.+...|+.+... ....+||+
T Consensus 53 ~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~-----~v~~~~~D~~~~~~--~~~~~fD~ 125 (202)
T 2fpo_A 53 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-----NARVVNSNAMSFLA--QKGTPHNI 125 (202)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-----SEEEECSCHHHHHS--SCCCCEEE
T ss_pred cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHHHh--hcCCCCCE
Confidence 3688999999999999998777775 8999999 88999999999998763 57777655432111 13457999
Q ss_pred EEEccccCCCCcHHHHHHHHHH--hhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQ--LCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~--ll~~~g~~~l~~~~r 235 (281)
|++... |.......+++.+.+ +|+|+|.++++....
T Consensus 126 V~~~~p-~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 126 VFVDPP-FRRGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp EEECCS-SSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred EEECCC-CCCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 987655 667788888998877 499999998887654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-13 Score=114.65 Aligned_cols=124 Identities=13% Similarity=0.090 Sum_probs=93.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+|.+|||+|||+|.+++.+++.+. +|+++|+ +.+++.|++|++.|++. +++.+...|+.+..+. ..+||
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~----~~i~~~~~d~l~~l~~---~~~~D 86 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK----EKIQVRLANGLAAFEE---TDQVS 86 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT----TTEEEEECSGGGGCCG---GGCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEEECchhhhccc---CcCCC
Confidence 4678999999999999999999874 6999999 88999999999999986 5788888665432221 12699
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i 256 (281)
+|+.+..- -..+..++......|+++|.+++... .....+..|+. ..||.+...
T Consensus 87 ~IviaG~G--g~~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~--~~Gf~i~~e 140 (225)
T 3kr9_A 87 VITIAGMG--GRLIARILEEGLGKLANVERLILQPN-NREDDLRIWLQ--DHGFQIVAE 140 (225)
T ss_dssp EEEEEEEC--HHHHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHH--HTTEEEEEE
T ss_pred EEEEcCCC--hHHHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHH--HCCCEEEEE
Confidence 88866542 23357888888889999999877655 44445555553 358876554
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-13 Score=113.09 Aligned_cols=101 Identities=11% Similarity=-0.028 Sum_probs=83.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..+..++..+.+|+++|+ +.+++.+++ ++. .++.+...|..+. ..+.+||+|
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~~-----~~~~~~~~d~~~~----~~~~~~D~v 111 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HGL-----DNVEFRQQDLFDW----TPDRQWDAV 111 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GCC-----TTEEEEECCTTSC----CCSSCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cCC-----CCeEEEecccccC----CCCCceeEE
Confidence 45679999999999999999999999999999 888998887 332 3677777665432 456789999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+++.++++... ...+++.+.++|+|||.++++...
T Consensus 112 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 148 (218)
T 3ou2_A 112 FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT 148 (218)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999988766 589999999999999999888653
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-13 Score=116.42 Aligned_cols=97 Identities=14% Similarity=0.035 Sum_probs=79.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||||||+|..+..+++.+.+|+++|+ +.+++.++++.. ++.+...|..+. .. +.+||+|
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~~~---~~-~~~fD~v 114 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP----------DAVLHHGDMRDF---SL-GRRFSAV 114 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTTC---CC-SCCEEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC----------CCEEEECChHHC---Cc-cCCcCEE
Confidence 35689999999999999999999999999999 889999987743 356666554432 12 5789999
Q ss_pred EEcc-ccCCC---CcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGSD-VIYSE---GAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~d-~iy~~---~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++.. ++++. .....+++.+.++|+|||.+++.
T Consensus 115 ~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 115 TCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp EECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred EEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9987 88775 46778999999999999998884
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-14 Score=119.08 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=80.2
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
.+..+.+++...+.. ..++++|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..++. ++.+
T Consensus 13 ~~~~~~~~~~~~l~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~ 83 (215)
T 4dzr_A 13 DTEVLVEEAIRFLKR---MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA------VVDW 83 (215)
T ss_dssp HHHHHHHHHHHHHTT---CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------------C
T ss_pred cHHHHHHHHHHHhhh---cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC------ceEE
Confidence 355666666654321 146789999999999999999987 458999999 8899999999988754 2344
Q ss_pred EEEecCCCCCCCcCC-----CCCcEEEEccccCCCCcH--------------------------HHHHHHHHHhhCCCcE
Q 023543 179 TELTWGDDPDQDLIQ-----PLPDYVLGSDVIYSEGAV--------------------------GDLLDTLLQLCGTQTT 227 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~-----~~fD~Iia~d~iy~~~~~--------------------------~~ll~~l~~ll~~~g~ 227 (281)
...|+.+ .+.. .+||+|+++...+..... ..+++.+.++|+|||.
T Consensus 84 ~~~d~~~----~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 159 (215)
T 4dzr_A 84 AAADGIE----WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRA 159 (215)
T ss_dssp CHHHHHH----HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSE
T ss_pred EEcchHh----hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCe
Confidence 4444332 1222 789999987665442221 7788888899999999
Q ss_pred -EEEEEeeeChhHHHHHHHHHhcCCeEEEE
Q 023543 228 -IFLAGELRNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 228 -~~l~~~~r~~~~~~~fl~~~~~~f~v~~i 256 (281)
+++.........+..++..+..+|....+
T Consensus 160 l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~ 189 (215)
T 4dzr_A 160 GVFLEVGHNQADEVARLFAPWRERGFRVRK 189 (215)
T ss_dssp EEEEECTTSCHHHHHHHTGGGGGGTEECCE
T ss_pred EEEEEECCccHHHHHHHHHHhhcCCceEEE
Confidence 66655544444444444433457754333
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-13 Score=113.51 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=84.4
Q ss_pred cCCCeEEEECCCcCHHH-HHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVG-CIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~-i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..+ ..++..+.+|+++|+ +.+++.+++++..++. ++.+...+..+ ..+.+.+||+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~---~~~~~~~fD~ 92 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF------KLNISKGDIRK---LPFKDESMSF 92 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC------CCCEEECCTTS---CCSCTTCEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC------ceEEEECchhh---CCCCCCceeE
Confidence 45789999999999874 455668889999999 8899999999887753 35566655432 2234578999
Q ss_pred EEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|++..++++. .....+++.+.++|+|||.+++....
T Consensus 93 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 93 VYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999998886 77899999999999999999887654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-13 Score=119.15 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=91.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhh--------------cCCCC-----------C
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNL--------------RHGDL-----------R 173 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~--------------~~~~~-----------~ 173 (281)
.++.+|||||||+|...+.++. .+.+|+++|+ +.|++.+++++..+. ..... .
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 4788999999999997665555 4679999999 889999988664311 00000 0
Q ss_pred CceEEEEEecCCCCC---CCcCCCCCcEEEEccccCC----CCcHHHHHHHHHHhhCCCcEEEEEEeeeC----------
Q 023543 174 GSAVVTELTWGDDPD---QDLIQPLPDYVLGSDVIYS----EGAVGDLLDTLLQLCGTQTTIFLAGELRN---------- 236 (281)
Q Consensus 174 ~~i~~~~l~w~~~~~---~~~~~~~fD~Iia~d~iy~----~~~~~~ll~~l~~ll~~~g~~~l~~~~r~---------- 236 (281)
..+.+...|..+..+ ..+...+||+|+++.++++ ......+++.+.++|+|||.+++......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~ 229 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 229 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence 012334434433111 1133456999999999987 55789999999999999999988743211
Q ss_pred ---hhHHHHHHHHHh-cCCeEEEEecCC
Q 023543 237 ---DSVLEYFLEAAM-KDFVIGRVEQTQ 260 (281)
Q Consensus 237 ---~~~~~~fl~~~~-~~f~v~~i~~~~ 260 (281)
.-..+.+.+.+. .||.+..+....
T Consensus 230 ~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 012234455555 489887775544
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.2e-13 Score=117.70 Aligned_cols=137 Identities=12% Similarity=0.149 Sum_probs=100.6
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
+.+..+.+++..... .++.+|||+|||+|.+++.+++. +.+|+++|+ +.+++.+++|+..++.. ++.
T Consensus 93 ~~te~l~~~~l~~~~-----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-----~v~ 162 (276)
T 2b3t_A 93 PDTECLVEQALARLP-----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-----NIH 162 (276)
T ss_dssp TTHHHHHHHHHHHSC-----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-----SEE
T ss_pred chHHHHHHHHHHhcc-----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----ceE
Confidence 446667777665421 35679999999999999999864 679999999 88999999999998764 577
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCCC-------------------------CcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYSE-------------------------GAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~-------------------------~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+...|+.+. +...+||+|+++.+.... ..+..+++.+.++|+|||.+++..
T Consensus 163 ~~~~d~~~~----~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 163 ILQSDWFSA----LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp EECCSTTGG----GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEEcchhhh----cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 777666432 224689999987433221 245788899999999999998876
Q ss_pred eeeChhHHHHHHHHHhcCCeE
Q 023543 233 ELRNDSVLEYFLEAAMKDFVI 253 (281)
Q Consensus 233 ~~r~~~~~~~fl~~~~~~f~v 253 (281)
.......+..++.. .||..
T Consensus 239 ~~~~~~~~~~~l~~--~Gf~~ 257 (276)
T 2b3t_A 239 GWQQGEAVRQAFIL--AGYHD 257 (276)
T ss_dssp CSSCHHHHHHHHHH--TTCTT
T ss_pred CchHHHHHHHHHHH--CCCcE
Confidence 65555554444433 47763
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-12 Score=116.72 Aligned_cols=130 Identities=13% Similarity=0.017 Sum_probs=91.7
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-cCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~~~~~fD~I 199 (281)
++++|||+|||+|.+++.+++.|++|+++|+ +.+++.+++|+..|++.. .++.+...|..+..... ..+.+||+|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~---~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQ---APIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTT---SCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCc---cceEEEECcHHHHHHHHHhcCCCceEE
Confidence 5679999999999999999999999999999 889999999999998751 13676665432211000 014689999
Q ss_pred EEccccCC----------CCcHHHHHHHHHHhhCCCcEEEEEEeeeC---hhHHHHHHHHHh--cCCeEE
Q 023543 200 LGSDVIYS----------EGAVGDLLDTLLQLCGTQTTIFLAGELRN---DSVLEYFLEAAM--KDFVIG 254 (281)
Q Consensus 200 ia~d~iy~----------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~---~~~~~~fl~~~~--~~f~v~ 254 (281)
++....|. ...+..+++.+.++|+|||.+++...... ...+...+.... .++.++
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 98544332 22467889999999999999777665443 233444444332 367765
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.5e-13 Score=113.57 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=93.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+|.+|||+|||+|.+++.+++.+. +|+++|+ +.+++.|++|++.|++. +++.+...|+.+... ...+||
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~----~~I~~~~gD~l~~~~---~~~~~D 92 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT----SKIDVRLANGLSAFE---EADNID 92 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT----TTEEEEECSGGGGCC---GGGCCC
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECchhhccc---cccccC
Confidence 4678999999999999999999874 6999999 88999999999999986 578888866543221 223799
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i 256 (281)
+|+.+.+. -..+..++......|+++|.++++... ....+..|+. ..||.+...
T Consensus 93 ~IviaGmG--g~lI~~IL~~~~~~l~~~~~lIlqp~~-~~~~lr~~L~--~~Gf~i~~E 146 (230)
T 3lec_A 93 TITICGMG--GRLIADILNNDIDKLQHVKTLVLQPNN-REDDLRKWLA--ANDFEIVAE 146 (230)
T ss_dssp EEEEEEEC--HHHHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHH--HTTEEEEEE
T ss_pred EEEEeCCc--hHHHHHHHHHHHHHhCcCCEEEEECCC-ChHHHHHHHH--HCCCEEEEE
Confidence 98865553 133577888888889999988777654 4445555653 358876554
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-12 Score=106.10 Aligned_cols=146 Identities=16% Similarity=0.090 Sum_probs=96.9
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
.+.+..+.+++... ..++++|||+|||+|.+++.+++.+ +|+++|+ +.+++. . .++.+
T Consensus 7 ~~~~~~l~~~l~~~------~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~------~--------~~~~~ 65 (170)
T 3q87_B 7 GEDTYTLMDALERE------GLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES------H--------RGGNL 65 (170)
T ss_dssp CHHHHHHHHHHHHH------TCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT------C--------SSSCE
T ss_pred CccHHHHHHHHHhh------cCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc------c--------cCCeE
Confidence 45567777776532 2567899999999999999999999 9999999 788776 1 24556
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCCc---------HHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA---------VGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM- 248 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~---------~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~- 248 (281)
...|+.+ .+.+.+||+|+++.+++.... ...+++.+.+.+ |+|.+++....... .+.+.+.+.
T Consensus 66 ~~~d~~~----~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~--~~~l~~~l~~ 138 (170)
T 3q87_B 66 VRADLLC----SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANR--PKEVLARLEE 138 (170)
T ss_dssp EECSTTT----TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC--HHHHHHHHHH
T ss_pred EECChhh----hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCC--HHHHHHHHHH
Confidence 6655543 233478999999776654222 245666677767 99999887654332 123444444
Q ss_pred cCCeEEEEecCCCCCCCCCCcEEEEEEEe
Q 023543 249 KDFVIGRVEQTQWHPDYCSPRVVVYILVK 277 (281)
Q Consensus 249 ~~f~v~~i~~~~~~~~~~~~~~~i~~~~~ 277 (281)
.+|....+..... ..+++.+++..|
T Consensus 139 ~gf~~~~~~~~~~----~~e~~~~~~~~~ 163 (170)
T 3q87_B 139 RGYGTRILKVRKI----LGETVYIIKGEK 163 (170)
T ss_dssp TTCEEEEEEEEEC----SSSEEEEEEEEC
T ss_pred CCCcEEEEEeecc----CCceEEEEEEec
Confidence 4899887765332 234444444443
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.3e-13 Score=118.76 Aligned_cols=103 Identities=15% Similarity=0.031 Sum_probs=86.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHH---cCCEEEEEec-hhHHHHHHHHHHHh-hcCCCCCCceEEEEEecCCCCCCCcCC--
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL---LGAQVILTDL-PDRLRLLKKNIENN-LRHGDLRGSAVVTELTWGDDPDQDLIQ-- 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~---~g~~V~~tD~-~~~l~~~~~N~~~n-~~~~~~~~~i~~~~l~w~~~~~~~~~~-- 193 (281)
.++++|||+|||+|..+..+++ .+.+|+++|+ +.+++.+++++..+ +.. .++.+...++.+. .+..
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~~v~~~~~d~~~~---~~~~~~ 107 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY----KNVSFKISSSDDF---KFLGAD 107 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CC----TTEEEEECCTTCC---GGGCTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCC----CceEEEEcCHHhC---Cccccc
Confidence 3688999999999999999994 5779999999 88999999999886 222 4788888776542 2233
Q ss_pred ----CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 194 ----PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 194 ----~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
.+||+|+++.++++. +...+++.+.++|+|||.+++.
T Consensus 108 ~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 108 SVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp TTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence 689999999999999 9999999999999999998773
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-14 Score=116.40 Aligned_cols=102 Identities=15% Similarity=0.040 Sum_probs=80.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
....+|||||||+|.+++.++.. +++|+++|+ +.|++.+++|+..++.. .++.+. + ... .....+||
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~----~~v~~~--d---~~~-~~~~~~~D 117 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTT----IKYRFL--N---KES-DVYKGTYD 117 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCS----SEEEEE--C---CHH-HHTTSEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC----ccEEEe--c---ccc-cCCCCCcC
Confidence 35779999999999999999875 678999999 88999999999999876 355552 2 111 23456799
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+|++..+++.-.+.+..+..+.+.|+|+|.+ |+.+
T Consensus 118 vVLa~k~LHlL~~~~~al~~v~~~L~pggvf-ISfp 152 (200)
T 3fzg_A 118 VVFLLKMLPVLKQQDVNILDFLQLFHTQNFV-ISFP 152 (200)
T ss_dssp EEEEETCHHHHHHTTCCHHHHHHTCEEEEEE-EEEE
T ss_pred hhhHhhHHHhhhhhHHHHHHHHHHhCCCCEE-EEeC
Confidence 9999999988655566666888999999875 5555
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-12 Score=111.15 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=103.8
Q ss_pred cCceecchHH-HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhhcC
Q 023543 95 TGSVMWDSGV-VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 95 tG~~~W~~s~-~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
...+.|+--. .||.-|...++. ....+|.+|||||||+|.....+|+. | .+|+++|+ ++|++.+++++...
T Consensus 50 ~e~r~w~p~rsklaa~i~~gl~~-l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--- 125 (233)
T 4df3_A 50 EEYREWNAYRSKLAAALLKGLIE-LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--- 125 (233)
T ss_dssp EEEEECCTTTCHHHHHHHTTCSC-CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---
T ss_pred ceeeeECCCchHHHHHHHhchhh-cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---
Confidence 3688898733 344444433221 22467999999999999999999974 4 47999999 89999998876553
Q ss_pred CCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChh-------HHHH
Q 023543 170 GDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDS-------VLEY 242 (281)
Q Consensus 170 ~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~-------~~~~ 242 (281)
.++.....+-.+..........+|+|++ |+ +++.....++..+.+.|||||.++++...+..+ .+.+
T Consensus 126 ----~ni~~V~~d~~~p~~~~~~~~~vDvVf~-d~-~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ 199 (233)
T 4df3_A 126 ----RNIFPILGDARFPEKYRHLVEGVDGLYA-DV-AQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKR 199 (233)
T ss_dssp ----TTEEEEESCTTCGGGGTTTCCCEEEEEE-CC-CCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHH
T ss_pred ----cCeeEEEEeccCccccccccceEEEEEE-ec-cCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHH
Confidence 3566565554433222334467898774 43 455677889999999999999999987665432 2333
Q ss_pred HHHHHh-cCCeEEEEe
Q 023543 243 FLEAAM-KDFVIGRVE 257 (281)
Q Consensus 243 fl~~~~-~~f~v~~i~ 257 (281)
-.+.+. .||.+....
T Consensus 200 ev~~L~~~GF~l~e~i 215 (233)
T 4df3_A 200 EIKTLMDGGLEIKDVV 215 (233)
T ss_dssp HHHHHHHTTCCEEEEE
T ss_pred HHHHHHHCCCEEEEEE
Confidence 344444 499876553
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-13 Score=123.02 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=87.5
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..++++|||||||+|.+++.+++.|+ +|+++|++.+++.+++|+..|+.. .++.+...+..+.. +. .+||+
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~---~~-~~~D~ 132 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLD----HIVEVIEGSVEDIS---LP-EKVDV 132 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCT----TTEEEEESCGGGCC---CS-SCEEE
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCC----CeEEEEECchhhcC---cC-CcceE
Confidence 46889999999999999999999988 899999998899999999999876 56888887664322 22 78999
Q ss_pred EEEccccCC---CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 199 VLGSDVIYS---EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 199 Iia~d~iy~---~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|++..+.|. ....+.+++.+.++|+|||.+++..
T Consensus 133 Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 133 IISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp EEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred EEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 999655554 4678999999999999999987543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-12 Score=111.82 Aligned_cols=122 Identities=12% Similarity=0.111 Sum_probs=91.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+|.+|||+|||+|.+++.+++.+. +|+++|+ +.+++.|++|++.|++. +++.+...|+.+... .+.+||
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~----~~I~v~~gD~l~~~~---~~~~~D 92 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT----EQIDVRKGNGLAVIE---KKDAID 92 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT----TTEEEEECSGGGGCC---GGGCCC
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEEecchhhccC---cccccc
Confidence 4678999999999999999999874 6999999 88999999999999986 568888866433221 223699
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIG 254 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~ 254 (281)
+|+.+... -..+..++......|++++.++++... ....+..|+.. .||.+.
T Consensus 93 ~IviagmG--g~lI~~IL~~~~~~L~~~~~lIlq~~~-~~~~lr~~L~~--~Gf~i~ 144 (244)
T 3gnl_A 93 TIVIAGMG--GTLIRTILEEGAAKLAGVTKLILQPNI-AAWQLREWSEQ--NNWLIT 144 (244)
T ss_dssp EEEEEEEC--HHHHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHH--HTEEEE
T ss_pred EEEEeCCc--hHHHHHHHHHHHHHhCCCCEEEEEcCC-ChHHHHHHHHH--CCCEEE
Confidence 98865443 133577888888889999888777654 44455556533 488863
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-14 Score=114.59 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=88.7
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
.+++..+.+++...+. ...++++|||+|||+|..++.+++.+ .+|+++|+ +.+++.+++|+..++.. .++.
T Consensus 12 rp~~~~~~~~~~~~l~---~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~~~ 84 (177)
T 2esr_A 12 RPTSDKVRGAIFNMIG---PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE----NRFT 84 (177)
T ss_dssp ------CHHHHHHHHC---SCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG----GGEE
T ss_pred CcCHHHHHHHHHHHHH---hhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC----CceE
Confidence 3444445555544321 13468899999999999999998876 48999999 88999999999988764 3677
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHH--HhhCCCcEEEEEEeeeC
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLL--QLCGTQTTIFLAGELRN 236 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~--~ll~~~g~~~l~~~~r~ 236 (281)
+...|+.+.. .....+||+|++..+ |.....+.+++.+. ++|+|||.+++....+.
T Consensus 85 ~~~~d~~~~~--~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 85 LLKMEAERAI--DCLTGRFDLVFLDPP-YAKETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp EECSCHHHHH--HHBCSCEEEEEECCS-SHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred EEECcHHHhH--HhhcCCCCEEEECCC-CCcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 7765553311 112356999997654 44455677788887 88999999998876544
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-13 Score=114.61 Aligned_cols=121 Identities=10% Similarity=-0.064 Sum_probs=86.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+.+|||||||+|..++.+|+. +.+|+++|+ +.+++.+++|+..++.. ++.+...|..+..+..+.+.+||.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-----nv~~~~~Da~~~l~~~~~~~~~d~ 108 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-----NLRVMCHDAVEVLHKMIPDNSLRM 108 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-----SEEEECSCHHHHHHHHSCTTCEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-----cEEEEECCHHHHHHHHcCCCChhe
Confidence 5679999999999999999875 457999999 88999999999998765 677776553221111134578999
Q ss_pred EEEc--cccCCCCcH------HHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc
Q 023543 199 VLGS--DVIYSEGAV------GDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK 249 (281)
Q Consensus 199 Iia~--d~iy~~~~~------~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~ 249 (281)
|++. +..+..... +.+++.+.++|+|||.++++..... -.+...+.+..
T Consensus 109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~--~~~~~~~~~~~ 165 (218)
T 3dxy_A 109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP--YAEHMLEVMSS 165 (218)
T ss_dssp EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH--HHHHHHHHHHT
T ss_pred EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH--HHHHHHHHHHh
Confidence 9987 444332222 3699999999999999988765332 22334444443
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=122.43 Aligned_cols=114 Identities=15% Similarity=0.205 Sum_probs=84.9
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcC---------------------------
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRH--------------------------- 169 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~--------------------------- 169 (281)
.+++++|||||||+|..++.+++. +.+|+++|+ +.+++.+++|+..++..
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 467899999999999999999986 679999999 88999999987765421
Q ss_pred --------------------------CCCCCceEEEEEecCCCCCC--CcCCCCCcEEEEccccCCC------CcHHHHH
Q 023543 170 --------------------------GDLRGSAVVTELTWGDDPDQ--DLIQPLPDYVLGSDVIYSE------GAVGDLL 215 (281)
Q Consensus 170 --------------------------~~~~~~i~~~~l~w~~~~~~--~~~~~~fD~Iia~d~iy~~------~~~~~ll 215 (281)
.....++.+...|+...... .....+||+|++..++.+. .....++
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 00114688888776543211 1245789999999987443 3788899
Q ss_pred HHHHHhhCCCcEEEEEEe
Q 023543 216 DTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 216 ~~l~~ll~~~g~~~l~~~ 233 (281)
+.+.++|+|||.+++..+
T Consensus 204 ~~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHHEEEEEEEEEECC
T ss_pred HHHHHHhCCCcEEEEecC
Confidence 999999999999988643
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=119.05 Aligned_cols=103 Identities=22% Similarity=0.268 Sum_probs=84.8
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..++++|||+|||+|.+++.+++.|+ +|+++|++.+++.+++|+..|+.. +++.+...+..+ ..+...+||+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~----~~i~~~~~d~~~---~~~~~~~~D~ 108 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFS----DKITLLRGKLED---VHLPFPKVDI 108 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCT----TTEEEEESCTTT---SCCSSSCEEE
T ss_pred hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCC----CCEEEEECchhh---ccCCCCcccE
Confidence 35788999999999999999999886 899999976899999999999875 568887765433 2234468999
Q ss_pred EEEccc---cCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 199 VLGSDV---IYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 199 Iia~d~---iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
|++..+ +.+...++.++..+.++|+|||.++
T Consensus 109 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 998754 3456778999999999999999986
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=113.04 Aligned_cols=129 Identities=14% Similarity=0.080 Sum_probs=96.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++++|||||||+|..++.+++. +.+|+++|+ +++++.+++|+..++.. .++.+...+..+.........+|
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~----~~v~~~~~d~~~~l~~~~~~~~f 137 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD----QRVTLREGPALQSLESLGECPAF 137 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT----TTEEEEESCHHHHHHTCCSCCCC
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHHhcCCCCCe
Confidence 46789999999999999999985 679999999 88999999999998875 57888876643211111112489
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC------------hhHHHHHHHHHhc--CCeEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN------------DSVLEYFLEAAMK--DFVIGRV 256 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~------------~~~~~~fl~~~~~--~f~v~~i 256 (281)
|+|++.. .......+++.+.++|+|||.+++...... ...++.|.+.+.. .|....+
T Consensus 138 D~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (248)
T 3tfw_A 138 DLIFIDA---DKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATAL 208 (248)
T ss_dssp SEEEECS---CGGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred EEEEECC---chHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEe
Confidence 9999743 355678899999999999999887765433 1235667777664 5666555
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-11 Score=114.01 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=110.2
Q ss_pred EEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHH
Q 023543 80 LSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRL 158 (281)
Q Consensus 80 l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~ 158 (281)
+++..+++++.... -+.+..+.+++...+. ..++.+|||||||+|.+++.+|..+.+|+++|+ +++++.
T Consensus 254 ~~~~~~~~~f~q~n------~~~~e~l~~~~~~~l~----~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~ 323 (433)
T 1uwv_A 254 LRLTFSPRDFIQVN------AGVNQKMVARALEWLD----VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEK 323 (433)
T ss_dssp EEEECCSSSCCCSB------HHHHHHHHHHHHHHHT----CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHH
T ss_pred EEEEECcccccccC------HHHHHHHHHHHHHhhc----CCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHH
Confidence 45555665543221 2235556666655432 245789999999999999999999889999999 889999
Q ss_pred HHHHHHHhhcCCCCCCceEEEEEecCCCCCC-CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 159 LKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 159 ~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
+++|+..|+.. ++.+...|+.+.... .+.+.+||+|++ |.-|... ..+++.+.+ ++|++++|+++. +
T Consensus 324 A~~n~~~~~~~-----~v~f~~~d~~~~l~~~~~~~~~fD~Vv~-dPPr~g~--~~~~~~l~~-~~p~~ivyvsc~---p 391 (433)
T 1uwv_A 324 GQQNARLNGLQ-----NVTFYHENLEEDVTKQPWAKNGFDKVLL-DPARAGA--AGVMQQIIK-LEPIRIVYVSCN---P 391 (433)
T ss_dssp HHHHHHHTTCC-----SEEEEECCTTSCCSSSGGGTTCCSEEEE-CCCTTCC--HHHHHHHHH-HCCSEEEEEESC---H
T ss_pred HHHHHHHcCCC-----ceEEEECCHHHHhhhhhhhcCCCCEEEE-CCCCccH--HHHHHHHHh-cCCCeEEEEECC---h
Confidence 99999999865 688888777653322 234468999886 5555433 256666654 689999988864 3
Q ss_pred hHHHHHHHHHh-cCCeEEEEecCCCCC
Q 023543 238 SVLEYFLEAAM-KDFVIGRVEQTQWHP 263 (281)
Q Consensus 238 ~~~~~fl~~~~-~~f~v~~i~~~~~~~ 263 (281)
.++..-+..+. .||.+..+..-.+-|
T Consensus 392 ~tlard~~~l~~~Gy~~~~~~~~d~Fp 418 (433)
T 1uwv_A 392 ATLARDSEALLKAGYTIARLAMLDMFP 418 (433)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCST
T ss_pred HHHHhhHHHHHHCCcEEEEEEEeccCC
Confidence 33333334444 589988875444433
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.9e-13 Score=113.15 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=79.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||||||+|..+..++..|.+|+++|+ +.+++.++++ +.+...+..+.. ..+.+.+||+|
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-------------~~~~~~d~~~~~-~~~~~~~fD~i 105 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK-------------FNVVKSDAIEYL-KSLPDKYLDGV 105 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT-------------SEEECSCHHHHH-HTSCTTCBSEE
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------------cceeeccHHHHh-hhcCCCCeeEE
Confidence 46789999999999999999999999999999 7889888866 122332221100 02345789999
Q ss_pred EEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++..++++.. ....+++.+.++|+|||.+++....
T Consensus 106 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 106 MISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred EECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9999999876 6799999999999999999887654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-13 Score=116.11 Aligned_cols=115 Identities=16% Similarity=0.105 Sum_probs=88.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++++|||+|||+|.+++.+|+.+. +|+++|+ +.+++.+++|++.|++. ++.+...|..+. .. ..+||
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-----~~~~~~~d~~~~-~~---~~~~D 188 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-----NVIPILADNRDV-EL---KDVAD 188 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-----SEEEEESCGGGC-CC---TTCEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CEEEEECChHHc-Cc---cCCce
Confidence 4678999999999999999998754 8999999 89999999999999875 567777665433 21 46799
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh---hHHHHHHHHHh
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND---SVLEYFLEAAM 248 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~---~~~~~fl~~~~ 248 (281)
+|++..+. ....++..+.+.|+|+|.+++++..... +.....++.+.
T Consensus 189 ~Vi~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~ 238 (272)
T 3a27_A 189 RVIMGYVH----KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYA 238 (272)
T ss_dssp EEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHH
T ss_pred EEEECCcc----cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHH
Confidence 99876543 5667888889999999999988876633 23334444444
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=6.8e-13 Score=113.03 Aligned_cols=130 Identities=17% Similarity=0.122 Sum_probs=91.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC---CcCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ---DLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~---~~~~ 193 (281)
.++++|||||||+|..++.+++. +.+|+++|+ +.+++.+++|+..++.. +++.+...+..+..+. ....
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~l~~~~~~~~~ 132 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ----DKVTILNGASQDLIPQLKKKYDV 132 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG----GGEEEEESCHHHHGGGTTTTSCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC----CceEEEECCHHHHHHHHHHhcCC
Confidence 46789999999999999999873 679999999 88999999999999875 4688887664321111 1112
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh--cCCeEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM--KDFVIGRVE 257 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~--~~f~v~~i~ 257 (281)
.+||+|++.....+......++..+ ++|+|||.+++........ ..|.+.+. ..|....++
T Consensus 133 ~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 195 (221)
T 3u81_A 133 DTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGT--PDFLAYVRGSSSFECTHYS 195 (221)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCC--HHHHHHHHHCTTEEEEEEE
T ss_pred CceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcch--HHHHHHHhhCCCceEEEcc
Confidence 6899999765444333333556666 8999999988776554331 33555554 357666654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=111.37 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=95.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC---C
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI---Q 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~---~ 193 (281)
.++++|||||||+|..++.+++. +.+|+++|+ +++++.+++|+..++.. +++.+...+..+... .+. .
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~-~~~~~~~ 131 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN----DRVEVRTGLALDSLQ-QIENEKY 131 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEESCHHHHHH-HHHHTTC
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHH-HHHhcCC
Confidence 46789999999999999999986 779999999 88999999999998775 468887765432111 011 1
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh------------hHHHHHHHHHhc--CCeEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND------------SVLEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~------------~~~~~fl~~~~~--~f~v~~i~ 257 (281)
.+||+|+.... ......+++.+.++|+|||.+++....... ..++.|.+.+.. .|....++
T Consensus 132 ~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p 206 (223)
T 3duw_A 132 EPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQ 206 (223)
T ss_dssp CCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 57999986533 456788999999999999988776544331 235667777763 56655554
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=110.39 Aligned_cols=100 Identities=13% Similarity=0.047 Sum_probs=82.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..++.+++.+.+|+++|+ +.+++.+++|+..++.. ++.+...|+.+.. ....+||+|
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~---~~~~~~D~i 147 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLH-----NVSTRHGDGWQGW---QARAPFDAI 147 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCGGGCC---GGGCCEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCC-----ceEEEECCcccCC---ccCCCccEE
Confidence 56889999999999999999999999999999 88999999999988764 6777776654322 234689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++..++++... .+.++|+|||.+++....
T Consensus 148 ~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 148 IVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred EEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 99988866432 578899999999888765
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=116.26 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=87.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++++|||+|||+|..++.++.. +++|+++|+ +.+++.+++++..++. ++.+...|..+. .+ ..+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~v~~~~~d~~~~---~~-~~~f 90 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY------DSEFLEGDATEI---EL-NDKY 90 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS------EEEEEESCTTTC---CC-SSCE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC------ceEEEEcchhhc---Cc-CCCe
Confidence 46789999999999999999875 579999999 8899999999877542 577777665432 22 3589
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|+|++..++++..+.+.+++.+.++|+|||.+++....
T Consensus 91 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 91 DIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred eEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 99999999999999999999999999999999887654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-13 Score=111.94 Aligned_cols=107 Identities=21% Similarity=0.150 Sum_probs=82.0
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-CcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~~~~~fD~I 199 (281)
++++|||+|||+|..++.+++.+++|+++|+ +.+++.+++|+..++. ++.+...|+.+.... ...+.+||+|
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~~~~~~~D~i 114 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL------GARVVALPVEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC------CCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC------ceEEEeccHHHHHHhhhccCCceEEE
Confidence 7889999999999999999999999999999 8899999999998864 355565444321100 0012379999
Q ss_pred EEccccCCCCcHHHHHHHHH--HhhCCCcEEEEEEeeeC
Q 023543 200 LGSDVIYSEGAVGDLLDTLL--QLCGTQTTIFLAGELRN 236 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~--~ll~~~g~~~l~~~~r~ 236 (281)
++..+.+ ...+.+++.+. ++|+|+|.++++.....
T Consensus 115 ~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 115 FMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp EECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred EECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 9876644 56677777777 89999999988876544
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=113.88 Aligned_cols=100 Identities=11% Similarity=-0.059 Sum_probs=84.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|..+..++.. +.+|+++|+ +.+++.++++ . .++.+...|..+.. .+.+||
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~-----~~~~~~~~d~~~~~----~~~~fD 97 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----L-----PNTNFGKADLATWK----PAQKAD 97 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----S-----TTSEEEECCTTTCC----CSSCEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----C-----CCcEEEECChhhcC----ccCCcC
Confidence 46789999999999999998886 789999999 8899999877 1 25667776654322 356899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+|+++.++++..+...+++.+.++|+|||.+++....
T Consensus 98 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 98 LLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp EEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred EEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 9999999999989999999999999999999888653
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.2e-13 Score=114.18 Aligned_cols=108 Identities=13% Similarity=0.012 Sum_probs=84.8
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-Cc-CCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DL-IQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~-~~~~f 196 (281)
..++.+|||+|||+|..+..+++.+.+|+++|+ +.+++.++++... .++.+...|..+.... .+ .+.+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~~ 125 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTA--------ANISYRLLDGLVPEQAAQIHSEIGD 125 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCC--------TTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcc--------cCceEEECcccccccccccccccCc
Confidence 356789999999999999999999889999999 8899999987621 2577777654321100 00 01359
Q ss_pred cEEEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 197 DYVLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 197 D~Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|+|++..++++.. ....+++.+.++|+|||.+++.....
T Consensus 126 d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 126 ANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp CEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred cEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 9999999999976 88999999999999999988876543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=114.13 Aligned_cols=122 Identities=14% Similarity=0.163 Sum_probs=89.9
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
+.+..+.+++..... ..++.+|||+|||+|.+++.+++. +.+|+++|+ +++++.+++|+..++.. +++.+
T Consensus 106 ~~te~lv~~~l~~~~----~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~----~~v~~ 177 (284)
T 1nv8_A 106 PETEELVELALELIR----KYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS----DRFFV 177 (284)
T ss_dssp TTHHHHHHHHHHHHH----HHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT----TSEEE
T ss_pred hhHHHHHHHHHHHhc----ccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CceEE
Confidence 446666776655422 125679999999999999999987 779999999 88999999999999875 46888
Q ss_pred EEEecCCCCCCCcCCCCC---cEEEEccc------------cCCCCc-------HHHHHHHHH-HhhCCCcEEEEEEeee
Q 023543 179 TELTWGDDPDQDLIQPLP---DYVLGSDV------------IYSEGA-------VGDLLDTLL-QLCGTQTTIFLAGELR 235 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~f---D~Iia~d~------------iy~~~~-------~~~ll~~l~-~ll~~~g~~~l~~~~r 235 (281)
...||.+.. ..+| |+|+++.. .|.+.. -..+++.+. +.++|||.+++.....
T Consensus 178 ~~~D~~~~~-----~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~ 252 (284)
T 1nv8_A 178 RKGEFLEPF-----KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED 252 (284)
T ss_dssp EESSTTGGG-----GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred EECcchhhc-----ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence 887775422 1468 99998622 211111 126788888 9999999988765443
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=109.64 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=88.0
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEe
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELT 182 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~ 182 (281)
.+.+++... ..++.+|||+|||+|..++.+++.|. +|+++|+ +.+++.+++|+... .++.+...+
T Consensus 31 ~~~~~l~~~------~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~i~~~~~d 97 (215)
T 2pxx_A 31 SFRALLEPE------LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV-------PQLRWETMD 97 (215)
T ss_dssp HHHHHHGGG------CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC-------TTCEEEECC
T ss_pred HHHHHHHHh------cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC-------CCcEEEEcc
Confidence 456666553 34678999999999999999999887 7999999 88999999887541 356777765
Q ss_pred cCCCCCCCcCCCCCcEEEEccccCC---------------CCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 183 WGDDPDQDLIQPLPDYVLGSDVIYS---------------EGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 183 w~~~~~~~~~~~~fD~Iia~d~iy~---------------~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
..+. .+.+.+||+|++..++.. ......+++.+.++|+|||.+++.....
T Consensus 98 ~~~~---~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 98 VRKL---DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp TTSC---CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hhcC---CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 5432 344568999999777633 2356889999999999999998877644
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.1e-13 Score=116.36 Aligned_cols=107 Identities=9% Similarity=-0.020 Sum_probs=87.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCc-CCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL-IQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~-~~~~fD 197 (281)
.++.+|||+|||+|..+..+++.+. +|+++|+ +.+++.+++++..++.. .++.+...+..+. .+ .+.+||
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~---~~~~~~~fD 135 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR----FKVFFRAQDSYGR---HMDLGKEFD 135 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS----SEEEEEESCTTTS---CCCCSSCEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC----ccEEEEECCcccc---ccCCCCCcC
Confidence 4678999999999998888888776 8999999 88999999998877653 3677777665432 22 356899
Q ss_pred EEEEccccCC----CCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 198 YVLGSDVIYS----EGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 198 ~Iia~d~iy~----~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+|++..++++ ......+++.+.++|+|||.+++....
T Consensus 136 ~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 136 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9999999865 466788999999999999999888654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-12 Score=112.76 Aligned_cols=121 Identities=11% Similarity=0.035 Sum_probs=92.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHh-hcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENN-LRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n-~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.++.+|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..+ +.. ++.+...|+.+ .+.+.+
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~-----~v~~~~~d~~~----~~~~~~ 179 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG-----NVRTSRSDIAD----FISDQM 179 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCT-----TEEEECSCTTT----CCCSCC
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCC-----cEEEEECchhc----cCcCCC
Confidence 46789999999999999998876 679999999 88999999999988 643 67777766543 233468
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEe
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
||+|++ +......+++.+.++|+|||.++++..... ..+.+.+.+. .||....+.
T Consensus 180 fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~--~~~~~~~~l~~~Gf~~~~~~ 235 (275)
T 1yb2_A 180 YDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD--QSEKTVLSLSASGMHHLETV 235 (275)
T ss_dssp EEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH--HHHHHHHHSGGGTEEEEEEE
T ss_pred ccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCeEEEEE
Confidence 999998 334557899999999999999988876442 3345556555 478755553
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=129.42 Aligned_cols=149 Identities=16% Similarity=0.107 Sum_probs=108.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|++|||+|||+|.+++.+++.|+ +|+++|+ +.+++.+++|++.|++. ..++.+...|..+... ....+||+
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~---~~~v~~i~~D~~~~l~--~~~~~fD~ 612 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT---GRAHRLIQADCLAWLR--EANEQFDL 612 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC---STTEEEEESCHHHHHH--HCCCCEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHH--hcCCCccE
Confidence 5789999999999999999999887 5999999 88999999999999875 1367777755432111 12468999
Q ss_pred EEEccccCC-----------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCCCC-
Q 023543 199 VLGSDVIYS-----------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYC- 266 (281)
Q Consensus 199 Iia~d~iy~-----------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~- 266 (281)
|++....+. ...+..++..+.++|+|||.+++++..+........+. ..+|.+..+....+.++|.
T Consensus 613 Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~--~~g~~~~~i~~~~lp~df~~ 690 (703)
T 3v97_A 613 IFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLA--KLGLKAQEITQKTLSQDFAR 690 (703)
T ss_dssp EEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHH--HTTEEEEECTTTTCCGGGTT
T ss_pred EEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHH--HcCCceeeeeeccCCCCCCC
Confidence 997544332 23577889999999999999998887644322122222 2478888888888888885
Q ss_pred CCcEE-EEEEE
Q 023543 267 SPRVV-VYILV 276 (281)
Q Consensus 267 ~~~~~-i~~~~ 276 (281)
.+.++ +|.++
T Consensus 691 ~~~ih~~w~i~ 701 (703)
T 3v97_A 691 NRQIHNCWLIT 701 (703)
T ss_dssp CSSCCEEEEEE
T ss_pred CCcceEEEEEe
Confidence 34443 55554
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=112.83 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=87.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hh------HHHHHHHHHHHhhcCCCCCCceEEEEEe-cCCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PD------RLRLLKKNIENNLRHGDLRGSAVVTELT-WGDDPDQ 189 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~------~l~~~~~N~~~n~~~~~~~~~i~~~~l~-w~~~~~~ 189 (281)
.++++|||+|||+|..++.++.. | .+|+++|+ +. +++.+++++..++.. .++.+...+ +. ....
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~-~~~~ 116 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG----DRLTVHFNTNLS-DDLG 116 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG----GGEEEECSCCTT-TCCG
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC----CceEEEECChhh-hccC
Confidence 46889999999999999998886 4 68999999 65 899999999887653 367777654 21 1122
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
.+.+.+||+|++..++++......+++.+.++++|||.+++....
T Consensus 117 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~ 161 (275)
T 3bkx_A 117 PIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWS 161 (275)
T ss_dssp GGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred CCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 234578999999999999888888999999999999999887543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=111.63 Aligned_cols=104 Identities=14% Similarity=0.075 Sum_probs=86.5
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
++.+|||+|||+|..+..+++ .+.+++++|++.+++.+++++...++. .++.+...|..+. ++. +||+|
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~----~p~-~~D~v 239 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLS----GRAQVVVGSFFDP----LPA-GAGGY 239 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCT----TTEEEEECCTTSC----CCC-SCSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcC----cCeEEecCCCCCC----CCC-CCcEE
Confidence 457999999999999988887 356899999988999999999887764 5788888765421 222 79999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++..++++..+ ...+++.+++.|+|||.+++....
T Consensus 240 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 240 VLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred EEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 99999988666 589999999999999999987654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.6e-13 Score=114.62 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=79.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||||||+|..+..++..+. +|+++|+ +.+++.+++++..++ .++.+...++.+.. ..+.+.+||+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~-~~~~~~~fD~ 131 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVA-PTLPDGHFDG 131 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHG-GGSCTTCEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC------CCeEEEecCHHHhh-cccCCCceEE
Confidence 3678999999999999999988665 7999999 889999999887654 25777776654321 1244578999
Q ss_pred EEE-ccccC----CCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 199 VLG-SDVIY----SEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 199 Iia-~d~iy----~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|++ ...+. +....+.+++.+.++|||||.+++..
T Consensus 132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred EEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 998 43321 23345578999999999999988764
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=116.76 Aligned_cols=105 Identities=12% Similarity=-0.006 Sum_probs=85.6
Q ss_pred cCCCeEEEECCCcCHHHHHHH--H-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAA--L-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a--~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..++.++ . .+.+|+++|+ +.+++.+++|+..++.. +++.+...|+.+. .+. .+|
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~---~~~-~~f 188 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA----GQITLHRQDAWKL---DTR-EGY 188 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG----GGEEEEECCGGGC---CCC-SCE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC----CceEEEECchhcC---Ccc-CCe
Confidence 568899999999999998875 2 4668999999 88999999999887765 4688888776542 223 789
Q ss_pred cEEEEccccCCCCcHH---HHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVG---DLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~---~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|++..++++..... .+++.+.++|+|||.++++..
T Consensus 189 D~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 189 DLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp EEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999999888765544 489999999999999998873
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=110.73 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=83.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++++|||+|||+|..++.+++ .+.+|+++|+ +++++.+++|+..+++. .++.+...+..+.... ..+.+||
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~-~~~~~fD 144 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE----NQVRIIEGNALEQFEN-VNDKVYD 144 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT----TTEEEEESCGGGCHHH-HTTSCEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECCHHHHHHh-hccCCcc
Confidence 4678999999999999999998 5679999999 88999999999998765 4788887665332110 1157899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|++.. .......+++.+.++|+|||.+++..
T Consensus 145 ~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 145 MIFIDA---AKAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp EEEEET---TSSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEEEcC---cHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 999643 35668889999999999999987743
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-11 Score=113.32 Aligned_cols=106 Identities=11% Similarity=0.077 Sum_probs=87.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..++.+++. +.+++++|++.+++.+++++...++. +++.+...|..+. ++. +||+
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~----~~v~~~~~d~~~~----~p~-~~D~ 271 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLA----DRCEILPGDFFET----IPD-GADV 271 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCT----TTEEEEECCTTTC----CCS-SCSE
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcC----CceEEeccCCCCC----CCC-CceE
Confidence 35689999999999999988875 55899999988999999999887765 5788888776421 222 7999
Q ss_pred EEEccccCCCCcHH--HHHHHHHHhhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVG--DLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~--~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|++..++++..+.. .+++.+.+.|+|||.+++.....
T Consensus 272 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~ 310 (369)
T 3gwz_A 272 YLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLI 310 (369)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred EEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 99999998876654 79999999999999999887554
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=114.26 Aligned_cols=110 Identities=15% Similarity=0.023 Sum_probs=86.0
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEec
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w 183 (281)
.+++++...+. ..++.+|||+|||+|..++.++..+.+|+++|+ +.+++.++++. ++.+...++
T Consensus 21 ~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~d~ 85 (261)
T 3ege_A 21 RIVNAIINLLN----LPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP-----------QVEWFTGYA 85 (261)
T ss_dssp HHHHHHHHHHC----CCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT-----------TEEEECCCT
T ss_pred HHHHHHHHHhC----CCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc-----------CCEEEECch
Confidence 45555554432 246789999999999999999999999999999 77877665443 466666555
Q ss_pred CCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 184 GDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 184 ~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.+ ..+.+.+||+|++..++++..+...+++.+.++|+ ||.+++...
T Consensus 86 ~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 86 EN---LALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp TS---CCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred hh---CCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 33 23456789999999999999999999999999999 997666554
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.1e-12 Score=114.79 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=85.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..++.+++. +.+++++|++.+++.+++|+..+++. .++.+...|+.+. ++ ..||+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~----~~-~~~D~ 251 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLA----DRVTVAEGDFFKP----LP-VTADV 251 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCT----TTEEEEECCTTSC----CS-CCEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCC----CceEEEeCCCCCc----CC-CCCCE
Confidence 35789999999999999988875 46899999988899999999988764 4788888765432 22 24999
Q ss_pred EEEccccCCCCcH--HHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLGSDVIYSEGAV--GDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia~d~iy~~~~~--~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|++..++++.... ..+++.+.++|+|||.+++...
T Consensus 252 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 252 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999999876654 4899999999999999888765
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=110.82 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=86.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC-CCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI-QPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~-~~~fD~ 198 (281)
.++++|||+|||+|..+..+++.+++|+++|+ +.+++.+++| . .++.+...|+.+..+ +. +.+||+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~-----~~~~~~~~d~~~~~~--~~~~~~fD~ 114 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN-----A-----PHADVYEWNGKGELP--AGLGAPFGL 114 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-----C-----TTSEEEECCSCSSCC--TTCCCCEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh-----C-----CCceEEEcchhhccC--CcCCCCEEE
Confidence 46789999999999999999999999999999 8899999988 1 257778877643322 33 578999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEe
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
|+++. ....+++.+.++|+|||.++......+... +.+.+. .||....+.
T Consensus 115 v~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 115 IVSRR------GPTSVILRLPELAAPDAHFLYVGPRLNVPE---VPERLAAVGWDIVAED 165 (226)
T ss_dssp EEEES------CCSGGGGGHHHHEEEEEEEEEEESSSCCTH---HHHHHHHTTCEEEEEE
T ss_pred EEeCC------CHHHHHHHHHHHcCCCcEEEEeCCcCCHHH---HHHHHHHCCCeEEEEE
Confidence 99973 457788999999999999883333333333 333344 488766654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.5e-12 Score=112.27 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=81.7
Q ss_pred ccCCCeEEEECCCcC-HHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 120 LLHGKKIVELGSGCG-LVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELGcGtG-~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..++.+|||+|||+| ..++.+|+ .|++|+++|+ +++++.|++|++..+.. ++.+...|..+ +.+.+|
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~-----~v~~v~gDa~~-----l~d~~F 189 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVD-----GVNVITGDETV-----IDGLEF 189 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCC-----SEEEEESCGGG-----GGGCCC
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCC-----CeEEEECchhh-----CCCCCc
Confidence 357899999999997 45577776 6899999999 89999999999988763 67777754322 335789
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+.+.. ......+++.+.+.|+|||++++...
T Consensus 190 DvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 190 DVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp SEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 99998655 46788999999999999999887653
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-12 Score=112.63 Aligned_cols=101 Identities=16% Similarity=0.089 Sum_probs=83.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..+..++..+.+|+++|+ +.+++.++++. .++.+...+..+. .+ ..+||+|
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~---~~-~~~fD~v 121 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY----------PHLHFDVADARNF---RV-DKPLDAV 121 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTSCEEECCTTTC---CC-SSCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC----------CCCEEEECChhhC---Cc-CCCcCEE
Confidence 46789999999999999999998999999999 88999988764 1345566554432 12 4689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
++..++++..+...+++.+.++|+|||.+++.....
T Consensus 122 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 122 FSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999999998899999999999999999998876643
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.9e-12 Score=107.36 Aligned_cols=120 Identities=17% Similarity=0.079 Sum_probs=89.5
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
++++|||+|||+|..+..++.. +++|+ +.+++.++++ ++.+...+..+ ..+...+||+|+
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~------------~~~~~~~d~~~---~~~~~~~fD~v~ 107 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR------------GVFVLKGTAEN---LPLKDESFDFAL 107 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT------------TCEEEECBTTB---CCSCTTCEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc------------CCEEEEccccc---CCCCCCCeeEEE
Confidence 4889999999999988887765 99999 8889988876 13445544332 223456899999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChh---------------------HHHHHHHHHh-cCCeEEEEec
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDS---------------------VLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~---------------------~~~~fl~~~~-~~f~v~~i~~ 258 (281)
+..++++......+++.+.++|+|||.++++...+... ..+.+.+.+. .||.+..+..
T Consensus 108 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 187 (219)
T 1vlm_A 108 MVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187 (219)
T ss_dssp EESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred EcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence 99999998889999999999999999999886543211 1233444454 4899877755
Q ss_pred CC
Q 023543 259 TQ 260 (281)
Q Consensus 259 ~~ 260 (281)
..
T Consensus 188 ~~ 189 (219)
T 1vlm_A 188 TL 189 (219)
T ss_dssp EC
T ss_pred cc
Confidence 43
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.7e-12 Score=113.97 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=86.1
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..++|||||||+|..++.+++ .+.+|+++|++.+++.+++++...+.. +++.+...|..+.. ..++ .+||+|
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~-~~~p-~~~D~v 252 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGS----ERIHGHGANLLDRD-VPFP-TGFDAV 252 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTG----GGEEEEECCCCSSS-CCCC-CCCSEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcc----cceEEEEccccccC-CCCC-CCcCEE
Confidence 568999999999999998887 466899999988999999998877654 47888886654321 0122 579999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++..++++..+ ...+++.+.+.|+|||.+++....
T Consensus 253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 253 WMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp EEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred EEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 99999987544 468899999999999999887643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-12 Score=111.02 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=100.0
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
.++..|.+.|... ....++++|||||||+|.++..+++.|+ +|+++|+ +.|++.+++|........ ..++
T Consensus 20 rg~~kL~~~L~~~----~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~--~~~~-- 91 (232)
T 3opn_A 20 RGGLKLEKALKEF----HLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVME--QFNF-- 91 (232)
T ss_dssp TTHHHHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEEC--SCCG--
T ss_pred CcHHHHHHHHHHc----CCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccc--cceE--
Confidence 3455666666543 1235688999999999999999999886 8999999 889888776533221100 0011
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee---------------eCh----hH
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL---------------RND----SV 239 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~---------------r~~----~~ 239 (281)
.+.. ...+..+.||.+ ..|+++.. +..+++.+.++|+|||.+++.... ++. ..
T Consensus 92 ---~~~~--~~~~~~~~~d~~-~~D~v~~~--l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~ 163 (232)
T 3opn_A 92 ---RNAV--LADFEQGRPSFT-SIDVSFIS--LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMT 163 (232)
T ss_dssp ---GGCC--GGGCCSCCCSEE-EECCSSSC--GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHH
T ss_pred ---EEeC--HhHcCcCCCCEE-EEEEEhhh--HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHH
Confidence 0000 011222235654 34555432 388999999999999998876311 111 13
Q ss_pred HHHHHHHHh-cCCeEEEEecCCCCCCCCCCcEEEEE
Q 023543 240 LEYFLEAAM-KDFVIGRVEQTQWHPDYCSPRVVVYI 274 (281)
Q Consensus 240 ~~~fl~~~~-~~f~v~~i~~~~~~~~~~~~~~~i~~ 274 (281)
.+.+.+.+. .||.+..+....+...+.+..+.+|.
T Consensus 164 ~~~l~~~l~~aGf~v~~~~~~pi~g~~gn~e~l~~~ 199 (232)
T 3opn_A 164 IEKVLKTATQLGFSVKGLTFSPIKGGAGNVEFLVHL 199 (232)
T ss_dssp HHHHHHHHHHHTEEEEEEEECSSCBTTTBCCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEccCCCCCCCHHHHHHH
Confidence 344555555 49999999887777667777776664
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-12 Score=108.33 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=77.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..+..+++.+.+|+++|+ +.+++.++++. .++.+...+..+. .. +.+||+|
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~~---~~-~~~~D~v 104 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL----------PDATLHQGDMRDF---RL-GRKFSAV 104 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC----------TTCEEEECCTTTC---CC-SSCEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC----------CCCEEEECCHHHc---cc-CCCCcEE
Confidence 46789999999999999999988889999999 88999988763 1356666554332 22 5689999
Q ss_pred EE-ccccCCC---CcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LG-SDVIYSE---GAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia-~d~iy~~---~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++ .+++++. .....+++.+.++|+|||.+++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 105 VSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred EEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 95 5577664 56788999999999999998875
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=108.37 Aligned_cols=99 Identities=13% Similarity=-0.018 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
++++|||+|||+|..+..+ +. +|+++|+ +.+++.++++. . ++.+...+..+ ..+.+.+||+|
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----~-----~~~~~~~d~~~---~~~~~~~fD~v 99 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----P-----EATWVRAWGEA---LPFPGESFDVV 99 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----T-----TSEEECCCTTS---CCSCSSCEEEE
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----C-----CcEEEEccccc---CCCCCCcEEEE
Confidence 7889999999999887766 77 9999999 88999998876 1 34455544332 22345689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
++..++++......+++.+.++|+|||.++++...+.
T Consensus 100 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 100 LLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp EEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9999999988999999999999999999999877654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-12 Score=109.25 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=95.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCc---CC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL---IQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~---~~ 193 (281)
.++++|||+|||+|..++.++.. +.+|+++|+ +++++.+++|+..++.. .++.+...+..+...... ..
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~ 138 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS----DKIGLRLSPAKDTLAELIHAGQA 138 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEESCHHHHHHHHHTTTCT
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC----CceEEEeCCHHHHHHHhhhccCC
Confidence 46789999999999999999985 679999999 88999999999998875 468887765432111100 11
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC------------hhHHHHHHHHHhc--CCeEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN------------DSVLEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~------------~~~~~~fl~~~~~--~f~v~~i~ 257 (281)
.+||+|+... .......+++.+.++|+|||.+++...... ...++.|.+.+.. +|....++
T Consensus 139 ~~fD~v~~~~---~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 213 (225)
T 3tr6_A 139 WQYDLIYIDA---DKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIP 213 (225)
T ss_dssp TCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEC
T ss_pred CCccEEEECC---CHHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 6899999533 245678899999999999999988754422 1245667776664 56665554
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-13 Score=116.33 Aligned_cols=105 Identities=11% Similarity=0.133 Sum_probs=80.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|++|||||||+|..+..+++.. .+|+++|+ +.+++.++++...++. ++.+...+|.+.. ..+.+.+||.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~------~~~~~~~~a~~~~-~~~~~~~FD~ 131 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH------KVIPLKGLWEDVA-PTLPDGHFDG 131 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS------EEEEEESCHHHHG-GGSCTTCEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC------ceEEEeehHHhhc-ccccccCCce
Confidence 478899999999999999888764 57999999 8999999998877643 4666776664322 2345678998
Q ss_pred EEE-----ccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 199 VLG-----SDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 199 Iia-----~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+. .....+..+.+.+++.+.++|||||++++..
T Consensus 132 i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred EEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 864 3334445667889999999999999987754
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=111.07 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=80.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..++.+++.|.+|+++|+ +.+++.+++|+..++. ++.+...++.+.. ...+||+|
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~----~~~~fD~v 109 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL------KIEFLQGDVLEIA----FKNEFDAV 109 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC------CCEEEESCGGGCC----CCSCEEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC------ceEEEECChhhcc----cCCCccEE
Confidence 35689999999999999999999999999999 8899999999987753 3666666554321 23579999
Q ss_pred EEcc-cc-C-CCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 200 LGSD-VI-Y-SEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 200 ia~d-~i-y-~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++.. .+ | .......+++.+.++|+|||.+++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 9752 22 2 23567899999999999999988754
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-13 Score=116.29 Aligned_cols=103 Identities=16% Similarity=-0.002 Sum_probs=83.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..++.+++.|.+|+++|+ +.+++.+++|+..+++. .++.+...|+.+.. .+.+||+|
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~----~~~~~D~v 148 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIA----DKIEFICGDFLLLA----SFLKADVV 148 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHG----GGCCCSEE
T ss_pred cCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCC----cCeEEEECChHHhc----ccCCCCEE
Confidence 47899999999999999999999999999999 88999999999998764 36888886654322 34689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++..++++.......+..+.++|+|+|.+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 149 FLSPPWGGPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp EECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred EECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence 98888777666555666778889999875443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.3e-12 Score=108.95 Aligned_cols=118 Identities=15% Similarity=0.084 Sum_probs=89.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++++|||+|||+|..++.++.. +.+|+++|+ +++++.+++|++.++.. +++.+...|+.+. +...+|
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~----~~~~~~ 163 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD----DRVTIKLKDIYEG----IEEENV 163 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT----TTEEEECSCGGGC----CCCCSE
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC----CceEEEECchhhc----cCCCCc
Confidence 56889999999999999999886 678999999 88999999999999875 4588887666532 345679
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc-C--CeE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK-D--FVI 253 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~-~--f~v 253 (281)
|+|++. ......+++.+.++|+|||.+++...... ..+.+.+.+.+ + |..
T Consensus 164 D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~g~~f~~ 216 (255)
T 3mb5_A 164 DHVILD-----LPQPERVVEHAAKALKPGGFFVAYTPCSN--QVMRLHEKLREFKDYFMK 216 (255)
T ss_dssp EEEEEC-----SSCGGGGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHTGGGBSC
T ss_pred CEEEEC-----CCCHHHHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHHHcCCCccc
Confidence 999973 34456789999999999999888765432 23334444443 5 643
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-12 Score=113.62 Aligned_cols=125 Identities=16% Similarity=0.220 Sum_probs=90.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|.+|||+|||+|.+++.+|+.|+ +|+++|+ +.+++.+++|++.|++. +++.+.+.|..+. .....||.
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~----~~v~~~~~D~~~~----~~~~~~D~ 195 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE----DRMSAYNMDNRDF----PGENIADR 195 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT----TTEEEECSCTTTC----CCCSCEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEeCcHHHh----ccccCCCE
Confidence 4689999999999999999999885 8999999 89999999999999987 5788877553321 23467999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh----hHHHHHHHHHh-cCCeEEEEe
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND----SVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~----~~~~~fl~~~~-~~f~v~~i~ 257 (281)
|+...+.+. ..++..+.++|++||.+.+....... ...+.+.+.+. .++.++.+.
T Consensus 196 Vi~~~p~~~----~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~ 255 (278)
T 3k6r_A 196 ILMGYVVRT----HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN 255 (278)
T ss_dssp EEECCCSSG----GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred EEECCCCcH----HHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEEE
Confidence 987765443 34566677889999987654433221 22333333333 477776554
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-11 Score=111.22 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=85.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++++|||+|||+|..+..+++. +.+++++|++.+++.+++|+..++.. +++.+...|..+. .+ +.+|+
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~---~~--~~~D~ 259 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVA----DRMRGIAVDIYKE---SY--PEADA 259 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCT----TTEEEEECCTTTS---CC--CCCSE
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCC----CCEEEEeCccccC---CC--CCCCE
Confidence 45789999999999999998875 55899999988999999999988765 4688888665432 12 34599
Q ss_pred EEEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEE
Q 023543 199 VLGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 199 Iia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|++..++++..+ ...+++.+.+.|+|||.+++..
T Consensus 260 v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 260 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999999988665 8899999999999999998876
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=114.23 Aligned_cols=106 Identities=17% Similarity=0.058 Sum_probs=78.5
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
+|++|||+|||+|..++.+|+.|++|+++|+ +.+++.+++|++.|++. . .+...|..+... .. ...||+|+
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~----~--~~~~~D~~~~l~-~~-~~~fD~Ii 285 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLR----V--DIRHGEALPTLR-GL-EGPFHHVL 285 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC----C--EEEESCHHHHHH-TC-CCCEEEEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCC----C--cEEEccHHHHHH-Hh-cCCCCEEE
Confidence 4899999999999999999999999999999 88999999999999875 2 233333211110 11 23499998
Q ss_pred EccccCCC---------CcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 201 GSDVIYSE---------GAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 201 a~d~iy~~---------~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
+....+.. ..+..++..+.++|+|||.++++....
T Consensus 286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 75443332 345788889999999999987555443
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.8e-13 Score=114.41 Aligned_cols=130 Identities=13% Similarity=0.088 Sum_probs=95.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCc---CC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL---IQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~---~~ 193 (281)
.++++|||||||+|..++.+|.. +.+|+++|+ +++++.+++|++.++.. .++.+...+..+...... ..
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~----~~i~~~~gda~~~l~~~~~~~~~ 134 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE----HKIKLRLGPALDTLHSLLNEGGE 134 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT----TTEEEEESCHHHHHHHHHHHHCS
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHHHHhhccCC
Confidence 46789999999999999999973 679999999 88999999999998875 578887755422111000 03
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC------------hhHHHHHHHHHhc--CCeEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN------------DSVLEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~------------~~~~~~fl~~~~~--~f~v~~i~ 257 (281)
.+||+|++... ......+++.+.++|+|||.+++...... ...++.|.+.+.. .|....++
T Consensus 135 ~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 209 (242)
T 3r3h_A 135 HQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLA 209 (242)
T ss_dssp SCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEES
T ss_pred CCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEE
Confidence 68999987533 55678899999999999999988654322 1235677777764 56665554
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=121.03 Aligned_cols=112 Identities=17% Similarity=0.074 Sum_probs=84.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCC-ceEEEEEecCCCCCCC-cCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRG-SAVVTELTWGDDPDQD-LIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~-~i~~~~l~w~~~~~~~-~~~~~f 196 (281)
.++++|||+|||+|.+++.+|+.|+ +|+++|+ +.+++.+++|++.|++. . ++.+...|..+..... ..+.+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~----~~~v~~~~~D~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD----MANHQLVVMDVFDYFKYARRHHLTY 286 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----CTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECCHHHHHHHHHHhCCCc
Confidence 4678999999999999999999776 7999999 89999999999999875 3 6777775543211100 013579
Q ss_pred cEEEEccccCC---------CCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 197 DYVLGSDVIYS---------EGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 197 D~Iia~d~iy~---------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
|+|++....+. ...+..+++.+.++|+|||.+++++....
T Consensus 287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 99987444321 12355678888999999999998876654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-12 Score=115.66 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=83.5
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..++++|||||||+|.+++.+++.|+ +|+++|++++++.++++++.|+.. .++.+...++.+. .+ ..+||+
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~----~~v~~~~~d~~~~---~~-~~~~D~ 119 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLT----DRIVVIPGKVEEV---SL-PEQVDI 119 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCT----TTEEEEESCTTTC---CC-SSCEEE
T ss_pred cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcchhhC---CC-CCceeE
Confidence 35789999999999999999999876 899999965889999999999875 4788888665432 12 257999
Q ss_pred EEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 199 VLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 199 Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|++..+.++ .......+..+.++|+|||.+++.
T Consensus 120 Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 120 IISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999888775 345566677788999999998754
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.34 E-value=9e-11 Score=98.33 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=86.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++++|||+|||+|.+++.+++.|. +|+++|+ +.+++.+++|+..++. ++.+...|+.+. ..+||+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~d~~~~------~~~~D~ 115 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG------KFKVFIGDVSEF------NSRVDI 115 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT------SEEEEESCGGGC------CCCCSE
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC------CEEEEECchHHc------CCCCCE
Confidence 4688999999999999999999876 7999999 8899999999988764 466666554331 248999
Q ss_pred EEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 199 VLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 199 Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
|++..+.+.. .....+++.+.+++ |.+++.+. .+....+.+...+. .||.++.+..
T Consensus 116 v~~~~p~~~~~~~~~~~~l~~~~~~l---~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~ 174 (207)
T 1wy7_A 116 VIMNPPFGSQRKHADRPFLLKAFEIS---DVVYSIHL-AKPEVRRFIEKFSWEHGFVVTHRLT 174 (207)
T ss_dssp EEECCCCSSSSTTTTHHHHHHHHHHC---SEEEEEEE-CCHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEcCCCccccCCchHHHHHHHHHhc---CcEEEEEe-CCcCCHHHHHHHHHHCCCeEEEEEE
Confidence 9987665443 34567788888877 44555542 23333333444444 4788776643
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=113.31 Aligned_cols=114 Identities=11% Similarity=-0.050 Sum_probs=77.8
Q ss_pred CCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCC-CCceEEEEEecCCCC-----CCCcCC
Q 023543 122 HGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDL-RGSAVVTELTWGDDP-----DQDLIQ 193 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~-~~~i~~~~l~w~~~~-----~~~~~~ 193 (281)
++.+|||||||+|.....++. .+++|+|+|+ +.|++.|++.....+..... .-++.+...+...+. ...+.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 478999999999965444444 4579999999 88999999987665422000 001334443321111 011345
Q ss_pred CCCcEEEEccccCC---CCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 194 PLPDYVLGSDVIYS---EGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 194 ~~fD~Iia~d~iy~---~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
.+||+|++..++++ ......+++.+.++|+|||.++++...+
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 68999999888753 3467899999999999999998887643
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=111.42 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=87.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..+..+++. +.+++++|++.+++.+++++..++.. +++.+...|+.+. .+. .+||+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~---~~~-~~~D~ 235 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVA----SRYHTIAGSAFEV---DYG-NDYDL 235 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCG----GGEEEEESCTTTS---CCC-SCEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCC----cceEEEecccccC---CCC-CCCcE
Confidence 35689999999999999988875 67999999998899999999888765 4688888765432 222 34999
Q ss_pred EEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|++..++++. .....+++.+.++|+|||.+++.....
T Consensus 236 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 236 VLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred EEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 9999999886 456899999999999999988876543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=107.05 Aligned_cols=120 Identities=15% Similarity=0.063 Sum_probs=91.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHh-hcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENN-LRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n-~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.++.+|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..+ +. .++.+...|+.+. .+.+.+
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-----~~v~~~~~d~~~~---~~~~~~ 166 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-----ENVRFHLGKLEEA---ELEEAA 166 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-----CCEEEEESCGGGC---CCCTTC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-----CCEEEEECchhhc---CCCCCC
Confidence 56889999999999999999886 579999999 88999999999988 63 3677777665432 234467
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGR 255 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~ 255 (281)
||+|++. ......+++.+.++|+|||.+++..... .....+.+.+. .+|....
T Consensus 167 ~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 167 YDGVALD-----LMEPWKVLEKAALALKPDRFLVAYLPNI--TQVLELVRAAEAHPFRLER 220 (258)
T ss_dssp EEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHTTTTEEEEE
T ss_pred cCEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceEE
Confidence 9999973 3345688999999999999988877644 23345555555 4776433
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-12 Score=112.25 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=80.0
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
++++|||+|||+|..+..++..|.+|+++|+ +.+++.++++... + +...+.. ...+.+.+||+|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~---------~--~~~~d~~---~~~~~~~~fD~v~ 119 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK---------N--VVEAKAE---DLPFPSGAFEAVL 119 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS---------C--EEECCTT---SCCSCTTCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC---------C--EEECcHH---HCCCCCCCEEEEE
Confidence 6789999999999999999999999999999 8899999877431 1 3443332 2224457899999
Q ss_pred EccccCC-CCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 201 GSDVIYS-EGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 201 a~d~iy~-~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
+..++++ ......+++.+.++|+|||.+++....+.
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 156 (260)
T 2avn_A 120 ALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 156 (260)
T ss_dssp ECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred EcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence 9876554 46699999999999999999998876543
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=105.50 Aligned_cols=128 Identities=8% Similarity=0.006 Sum_probs=88.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..++.+++. +.+|+++|+ +.+++.+.+++..+ .++.+...|..+.........+|
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-------~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-------TNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-------TTEEEECSCTTCGGGGGGGCCCE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-------CCeEEEEcccCChhhhcccCCcE
Confidence 46789999999999999998875 368999999 78888888888776 25666665543311112235689
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC----hhH---HHHHHHHHh-cCCeEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN----DSV---LEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~----~~~---~~~fl~~~~-~~f~v~~i~ 257 (281)
|+|++.-. .+.....++..+.++|+|||.++++...+. ... +..-++.+. .||.+..+.
T Consensus 149 D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 215 (233)
T 2ipx_A 149 DVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQL 215 (233)
T ss_dssp EEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEE
T ss_pred EEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence 99997433 445556778889999999999998765421 001 111134444 389877643
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-11 Score=105.00 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=76.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-C-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-CCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-QDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~~~~~~~f 196 (281)
.++.+|||+|||+|.+++.+++. | .+|+++|+ +.+++.+++|+..+ .++.+...+..+... ..+. .+|
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~v~~~~~d~~~~~~~~~~~-~~~ 144 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-------ENIIPILGDANKPQEYANIV-EKV 144 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-------TTEEEEECCTTCGGGGTTTS-CCE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-------CCeEEEECCCCCcccccccC-ccE
Confidence 46789999999999999999886 4 68999999 88999999987665 257766655433110 1222 679
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+ .++ ..+.....+++.+.++|+|||.++++.
T Consensus 145 D~v~-~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~ 178 (230)
T 1fbn_A 145 DVIY-EDV-AQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp EEEE-ECC-CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEE-Eec-CChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence 9998 232 234445888999999999999998873
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=108.38 Aligned_cols=122 Identities=12% Similarity=0.068 Sum_probs=91.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|.+++.+++. +.+|+++|+ +.+++.+++|+..++.. .++.+...|+.+. +.+.+|
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~----~~~~~~ 182 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI----ERVTIKVRDISEG----FDEKDV 182 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG----GGEEEECCCGGGC----CSCCSE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC----CCEEEEECCHHHc----ccCCcc
Confidence 46789999999999999999886 468999999 88999999999988763 3677776655432 344679
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
|+|++. ......+++.+.++|+|+|.+++...... ....+.+.+. .+|....+.
T Consensus 183 D~V~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 183 DALFLD-----VPDPWNYIDKCWEALKGGGRFATVCPTTN--QVQETLKKLQELPFIRIEVW 237 (277)
T ss_dssp EEEEEC-----CSCGGGTHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHSSEEEEEEE
T ss_pred CEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCceeEEE
Confidence 999973 33456788999999999999888765432 2334555554 478755543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.7e-12 Score=106.53 Aligned_cols=104 Identities=8% Similarity=0.034 Sum_probs=72.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+|.+|||||||+|..+..+++.. .+|+++|+ +.+++.+.++++.. .++.+...|..+.........+||
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-------~~v~~~~~d~~~~~~~~~~~~~fD 128 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-------NNIIPLLFDASKPWKYSGIVEKVD 128 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-------SSEEEECSCTTCGGGTTTTCCCEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-------CCeEEEEcCCCCchhhccccccee
Confidence 467899999999999999888754 68999999 78887766665542 245444433221100011236899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+|++. + ..+.....+++.+.++|||||.++++..
T Consensus 129 ~V~~~-~-~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 129 LIYQD-I-AQKNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp EEEEC-C-CSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEe-c-cChhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99976 2 3344455678999999999999998853
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.1e-12 Score=106.95 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=80.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..+..++..+.+|+++|+ +.+++.++++.. .+...+..+. ...+.+.+||+|
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~------------~~~~~d~~~~-~~~~~~~~fD~v 97 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLD------------HVVLGDIETM-DMPYEEEQFDCV 97 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSS------------EEEESCTTTC-CCCSCTTCEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCC------------cEEEcchhhc-CCCCCCCccCEE
Confidence 36789999999999999999888889999999 788888875531 2344343221 123345789999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++.+++++......+++.+.++|+|||.++++...
T Consensus 98 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 98 IFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp EEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred EECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99999999888899999999999999999988654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=114.64 Aligned_cols=134 Identities=16% Similarity=0.048 Sum_probs=94.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhc-CCCCCCceEEEEEecCCCCCCC-cCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLR-HGDLRGSAVVTELTWGDDPDQD-LIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~-~~~~~~~i~~~~l~w~~~~~~~-~~~~~f 196 (281)
.++++|||+|||+|.+++.+++.|+ +|+++|+ +.+++.+++|+..|++ . .++.+...|..+..... ..+.+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~----~~v~~~~~D~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL----SKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCG----GGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc----cceEEEECCHHHHHHHHHhcCCCC
Confidence 4688999999999999999999875 8999999 8899999999999987 4 36777775543211100 013579
Q ss_pred cEEEEccccCC---------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChh--HHHHHHH-HHh-cCCeEEEEec
Q 023543 197 DYVLGSDVIYS---------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDS--VLEYFLE-AAM-KDFVIGRVEQ 258 (281)
Q Consensus 197 D~Iia~d~iy~---------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~--~~~~fl~-~~~-~~f~v~~i~~ 258 (281)
|+|++....+. ...+..++..+.++|+|+|.+++++...... .+...+. .+. .++.++.+..
T Consensus 295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~ 369 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQ 369 (396)
T ss_dssp EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 99987544332 2567889999999999999999887654322 2233332 222 3655555543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-11 Score=108.79 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=84.9
Q ss_pred CCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 123 GKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
+++|||+|||+|..+..+++. +.+++++|++.+++.+++++..++.. .++.+...|+.+. ++ .+||+|+
T Consensus 168 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~----~~-~~~D~v~ 238 (334)
T 2ip2_A 168 GRSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAG----ERVSLVGGDMLQE----VP-SNGDIYL 238 (334)
T ss_dssp TCEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHT----TSEEEEESCTTTC----CC-SSCSEEE
T ss_pred CCEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCC----CcEEEecCCCCCC----CC-CCCCEEE
Confidence 389999999999999988875 56899999988899999999887765 4788888765432 22 5799999
Q ss_pred EccccCCCCcH--HHHHHHHHHhhCCCcEEEEEEee
Q 023543 201 GSDVIYSEGAV--GDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 201 a~d~iy~~~~~--~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+..++++.... ..+++.+.+.|+|||.+++....
T Consensus 239 ~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 239 LSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp EESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred EchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 99999865544 49999999999999999988643
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-10 Score=107.36 Aligned_cols=134 Identities=18% Similarity=0.149 Sum_probs=92.8
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE 180 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~ 180 (281)
.+..+.+++.. ..++.+|||+|||+|.+++.+|+.+.+|+++|+ +++++.+++|+..|++. +.+..
T Consensus 277 ~~e~l~~~~~~-------~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~------v~~~~ 343 (425)
T 2jjq_A 277 QAVNLVRKVSE-------LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD------AEFEV 343 (425)
T ss_dssp HHHHHHHHHHH-------HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC------EEEEE
T ss_pred HHHHHHHHhhc-------cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc------EEEEE
Confidence 34455555543 246789999999999999999999899999999 88999999999998752 66777
Q ss_pred EecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCC
Q 023543 181 LTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQ 260 (281)
Q Consensus 181 l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~ 260 (281)
.|..+.. ..+||+|++... +. ...+.+++.+.. ++|+|++++++. +.++.+=+..+. |++..+..-.
T Consensus 344 ~d~~~~~-----~~~fD~Vv~dPP-r~-g~~~~~~~~l~~-l~p~givyvsc~---p~tlarDl~~l~--y~l~~~~~~D 410 (425)
T 2jjq_A 344 ASDREVS-----VKGFDTVIVDPP-RA-GLHPRLVKRLNR-EKPGVIVYVSCN---PETFARDVKMLD--YRIDEIVALD 410 (425)
T ss_dssp CCTTTCC-----CTTCSEEEECCC-TT-CSCHHHHHHHHH-HCCSEEEEEESC---HHHHHHHHHHSS--CCEEEEEEEC
T ss_pred CChHHcC-----ccCCCEEEEcCC-cc-chHHHHHHHHHh-cCCCcEEEEECC---hHHHHhHHhhCe--EEEEEEEEEC
Confidence 5554322 127999997433 32 233457777654 899999999874 333322233332 7777775443
Q ss_pred C
Q 023543 261 W 261 (281)
Q Consensus 261 ~ 261 (281)
+
T Consensus 411 m 411 (425)
T 2jjq_A 411 M 411 (425)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.3e-11 Score=106.98 Aligned_cols=117 Identities=20% Similarity=0.082 Sum_probs=86.7
Q ss_pred HHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEE
Q 023543 104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 104 ~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
..++..+..... ..++.+|||+|||+|.+++.++..+ .+|+++|+ +.+++.+++|+..+++. ++.+.
T Consensus 189 ~~la~~l~~~~~----~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-----~i~~~ 259 (354)
T 3tma_A 189 PVLAQALLRLAD----ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-----WIRFL 259 (354)
T ss_dssp HHHHHHHHHHTT----CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-----TCEEE
T ss_pred HHHHHHHHHHhC----CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-----ceEEE
Confidence 345555544321 3467899999999999999999865 68999999 88999999999998764 57777
Q ss_pred EEecCCCCCCCcCCCCCcEEEEccccCCCC---------cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 180 ELTWGDDPDQDLIQPLPDYVLGSDVIYSEG---------AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 180 ~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~---------~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
..|..+. .....+||+|++..+ |... .+..+++.+.++|+|||.+++...
T Consensus 260 ~~D~~~~---~~~~~~~D~Ii~npP-yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 260 RADARHL---PRFFPEVDRILANPP-HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp ECCGGGG---GGTCCCCSEEEECCC-SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred eCChhhC---ccccCCCCEEEECCC-CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 7665432 222356899887544 4321 247899999999999999888755
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-12 Score=113.98 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=80.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|.+++. ++.+.+|+++|+ +.+++.+++|++.|++. .++.+...|..+.. .+||+|
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~----~~v~~~~~D~~~~~------~~fD~V 262 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLE----HKIIPILSDVREVD------VKGNRV 262 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEESCGGGCC------CCEEEE
T ss_pred CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECChHHhc------CCCcEE
Confidence 3788999999999999999 886668999999 88999999999999875 46888776654321 689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
++. ..+. ...+++.+.++|+|+|.++++.....
T Consensus 263 i~d-pP~~---~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 263 IMN-LPKF---AHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp EEC-CTTT---GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred EEC-CcHh---HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 974 3333 23788889999999998877655554
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-11 Score=112.02 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=101.7
Q ss_pred CCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hh
Q 023543 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PD 154 (281)
Q Consensus 76 ~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~ 154 (281)
.|..+.+..++++|+.... ..+..+..++..... ..+++|||||||+|.+++.+|+.+.+|+++|+ ++
T Consensus 178 ~g~~~~~~~~~~~F~Q~n~------~~~~~l~~~~~~~~~-----~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ 246 (369)
T 3bt7_A 178 AGKEMIYRQVENSFTQPNA------AMNIQMLEWALDVTK-----GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKP 246 (369)
T ss_dssp TTBCCEEEEETTSCCCSBH------HHHHHHHHHHHHHTT-----TCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHH
T ss_pred CCceEEEEECCCCeecCCH------HHHHHHHHHHHHHhh-----cCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHH
Confidence 5666777777877665443 334556666655422 24678999999999999999998889999999 88
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-------------CcCCCCCcEEEEccccCCCCcHHHHHHHHHHh
Q 023543 155 RLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-------------DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQL 221 (281)
Q Consensus 155 ~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-------------~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~l 221 (281)
+++.+++|++.|++. ++.+...|..+.... .+.+.+||+|+.. .-+. .....+ .++
T Consensus 247 ai~~a~~n~~~ng~~-----~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~d-PPr~-g~~~~~----~~~ 315 (369)
T 3bt7_A 247 SVAAAQYNIAANHID-----NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD-PPRS-GLDSET----EKM 315 (369)
T ss_dssp HHHHHHHHHHHTTCC-----SEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEEC-CCTT-CCCHHH----HHH
T ss_pred HHHHHHHHHHHcCCC-----ceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEEC-cCcc-ccHHHH----HHH
Confidence 999999999999874 677766443211000 0001379998863 3332 122333 334
Q ss_pred hCCCcE-EEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCC
Q 023543 222 CGTQTT-IFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPD 264 (281)
Q Consensus 222 l~~~g~-~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~ 264 (281)
++++|. +|+++. +.++.+=+..+.++|+++.+..-.+-|.
T Consensus 316 l~~~g~ivyvsc~---p~t~ard~~~l~~~y~~~~~~~~D~FP~ 356 (369)
T 3bt7_A 316 VQAYPRILYISCN---PETLCKNLETLSQTHKVERLALFDQFPY 356 (369)
T ss_dssp HTTSSEEEEEESC---HHHHHHHHHHHHHHEEEEEEEEECCSTT
T ss_pred HhCCCEEEEEECC---HHHHHHHHHHHhhCcEEEEEEeeccCCC
Confidence 446655 445543 3333322333345688888765444443
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-11 Score=109.79 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=85.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..+..+++.+ .+++++|++.+++.+++|+..++.. .++.+...|+.+. ++ ..||+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~----~~-~~~D~ 252 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLS----DRVDVVEGDFFEP----LP-RKADA 252 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCT----TTEEEEECCTTSC----CS-SCEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCC----CceEEEeCCCCCC----CC-CCccE
Confidence 356899999999999999888754 5799999988999999999988764 4788888776432 22 34999
Q ss_pred EEEccccCCCCcH--HHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGAV--GDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~~--~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|++..++++.... ..+++.+.++|+|||.+++....
T Consensus 253 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 253 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 9999999876554 58999999999999999887654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-11 Score=102.71 Aligned_cols=118 Identities=12% Similarity=0.094 Sum_probs=88.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..++.+++.+.+|+++|+ +++++.+++|+..+++. .++.+...++.+.. ..+.+||+|
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~---~~~~~~D~v 162 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLG----KNVKFFNVDFKDAE---VPEGIFHAA 162 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCC----TTEEEECSCTTTSC---CCTTCBSEE
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCC----CcEEEEEcChhhcc---cCCCcccEE
Confidence 46889999999999999999888889999999 88999999999988764 36777665544321 134679999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCe
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~ 252 (281)
++. ......+++.+.++|+|+|.+++...... ....+...+.+.|.
T Consensus 163 ~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~f~ 208 (248)
T 2yvl_A 163 FVD-----VREPWHYLEKVHKSLMEGAPVGFLLPTAN--QVIKLLESIENYFG 208 (248)
T ss_dssp EEC-----SSCGGGGHHHHHHHBCTTCEEEEEESSHH--HHHHHHHHSTTTEE
T ss_pred EEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHhhCC
Confidence 973 23456788999999999999988876432 23345555443344
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-12 Score=109.27 Aligned_cols=130 Identities=10% Similarity=-0.031 Sum_probs=90.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..+..++..+.+|+++|+ +.+++.+++|+..++ ++.+...+..+.. ....+||+|
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~v~~~~~d~~~~~---~~~~~fD~v 138 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN-------NIKLILGDGTLGY---EEEKPYDRV 138 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS-------SEEEEESCGGGCC---GGGCCEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC-------CeEEEECCccccc---ccCCCccEE
Confidence 46789999999999999999998899999999 889999999987653 4667766554311 124689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCCCCC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCS 267 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~ 267 (281)
++..++++.. ..+.++|+|||.+++.........+..+.. ....|....+....+.+....
T Consensus 139 ~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 199 (231)
T 1vbf_A 139 VVWATAPTLL------CKPYEQLKEGGIMILPIGVGRVQKLYKVIK-KGNSPSLENLGEVMFGRIGGL 199 (231)
T ss_dssp EESSBBSSCC------HHHHHTEEEEEEEEEEECSSSSEEEEEEEC-CTTSCEEEEEEEECCCBCCST
T ss_pred EECCcHHHHH------HHHHHHcCCCcEEEEEEcCCCccEEEEEEE-cCCeeEEEEeccEEEEEcCCc
Confidence 9999887643 468889999999988865443211111111 123566666554444444333
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.2e-12 Score=108.32 Aligned_cols=130 Identities=13% Similarity=0.096 Sum_probs=93.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC--------
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-------- 188 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-------- 188 (281)
.++++|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..++.. .++.+...+..+...
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~----~~v~~~~~d~~~~~~~~~~~~~~ 134 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE----NKIFLKLGSALETLQVLIDSKSA 134 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHCSSC
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCEEEEECCHHHHHHHHHhhccc
Confidence 46789999999999999999885 579999999 88999999999988764 357777655322100
Q ss_pred ----CCcCC--CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh------------hHHHHHHHHHhc-
Q 023543 189 ----QDLIQ--PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND------------SVLEYFLEAAMK- 249 (281)
Q Consensus 189 ----~~~~~--~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~------------~~~~~fl~~~~~- 249 (281)
..+.. .+||+|++.. .......+++.+.++|+|||.+++....... ..++.|.+.+..
T Consensus 135 ~~~~~~f~~~~~~fD~I~~~~---~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (239)
T 2hnk_A 135 PSWASDFAFGPSSIDLFFLDA---DKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYND 211 (239)
T ss_dssp CGGGTTTCCSTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHC
T ss_pred ccccccccCCCCCcCEEEEeC---CHHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhC
Confidence 01122 6899999763 3456778999999999999999887532211 134566666653
Q ss_pred -CCeEEEEe
Q 023543 250 -DFVIGRVE 257 (281)
Q Consensus 250 -~f~v~~i~ 257 (281)
.|.+..++
T Consensus 212 ~~~~~~~~p 220 (239)
T 2hnk_A 212 SLVDVSLVP 220 (239)
T ss_dssp TTEEEEEEC
T ss_pred CCeEEEEEE
Confidence 56666665
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.8e-12 Score=109.73 Aligned_cols=113 Identities=20% Similarity=0.146 Sum_probs=78.0
Q ss_pred CCCeEEEECCCcCHHHHHHHHc----CCEEEEEec-hhHHHHHHHHHHHh---hcCCC---------------------C
Q 023543 122 HGKKIVELGSGCGLVGCIAALL----GAQVILTDL-PDRLRLLKKNIENN---LRHGD---------------------L 172 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~----g~~V~~tD~-~~~l~~~~~N~~~n---~~~~~---------------------~ 172 (281)
++.+|||+|||+|.+++.++.. +.+|+++|+ +.+++.+++|+..+ ++... .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999998876 568999999 88999999998876 43200 0
Q ss_pred CCceE-------------EEEEecCCCCCC-Cc-CCCCCcEEEEccccCCC---------CcHHHHHHHHHHhhCCCcEE
Q 023543 173 RGSAV-------------VTELTWGDDPDQ-DL-IQPLPDYVLGSDVIYSE---------GAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 173 ~~~i~-------------~~~l~w~~~~~~-~~-~~~~fD~Iia~d~iy~~---------~~~~~ll~~l~~ll~~~g~~ 228 (281)
..++. +...|+.+.... .. ...+||+|++..+.... .....+++.+.++|+|||.+
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 00033 555554321100 00 23489999987554332 33568999999999999999
Q ss_pred EEEEee
Q 023543 229 FLAGEL 234 (281)
Q Consensus 229 ~l~~~~ 234 (281)
+++...
T Consensus 211 ~~~~~~ 216 (250)
T 1o9g_A 211 AVTDRS 216 (250)
T ss_dssp EEEESS
T ss_pred EEeCcc
Confidence 885443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-11 Score=103.14 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=80.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..+..+++.+ .+|+++|+ +.+++.+++|+..++.. ++.+...+..... ....+|
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~---~~~~~f 147 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-----NVIVIVGDGTLGY---EPLAPY 147 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-----TEEEEESCGGGCC---GGGCCE
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CeEEEECCcccCC---CCCCCe
Confidence 567899999999999999988865 78999999 88999999999988764 5777765542211 124689
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|+|++..++++.. +.+.++|+|||.+++.....
T Consensus 148 D~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 148 DRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp EEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred eEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence 9999999887643 57889999999998887544
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-11 Score=107.86 Aligned_cols=138 Identities=15% Similarity=0.081 Sum_probs=93.8
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCce
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
.++.+++..+. ..++.+|||+|||+|..++.++.. +.+|+++|+ +.+++.+++|++.++.. ++
T Consensus 105 ~~s~l~~~~l~--------~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-----~v 171 (315)
T 1ixk_A 105 ASSMYPPVALD--------PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-----NV 171 (315)
T ss_dssp HHHHHHHHHHC--------CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-----SE
T ss_pred HHHHHHHHHhC--------CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-----eE
Confidence 44555555543 346889999999999999988864 368999999 88999999999999865 56
Q ss_pred EEEEEecCCCCCCCcCCCCCcEEEEccc------cCCCC----------------cHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 177 VVTELTWGDDPDQDLIQPLPDYVLGSDV------IYSEG----------------AVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~~~~fD~Iia~d~------iy~~~----------------~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
.+...|..+. .....+||+|++.-. +.... ....+++.+.++|+|||.++++.-.
T Consensus 172 ~~~~~D~~~~---~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 172 ILFHSSSLHI---GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp EEESSCGGGG---GGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEECChhhc---ccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 6666544321 112457999997322 21111 1258899999999999998875432
Q ss_pred ----eChhHHHHHHHHHhcCCeEEEE
Q 023543 235 ----RNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 235 ----r~~~~~~~fl~~~~~~f~v~~i 256 (281)
.+...++.|++. .+|.+..+
T Consensus 249 ~~~~Ene~~v~~~l~~--~~~~~~~~ 272 (315)
T 1ixk_A 249 LEPEENEFVIQWALDN--FDVELLPL 272 (315)
T ss_dssp CCGGGTHHHHHHHHHH--SSEEEECC
T ss_pred CChHHhHHHHHHHHhc--CCCEEecC
Confidence 234455666653 35665544
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.5e-12 Score=107.20 Aligned_cols=105 Identities=13% Similarity=0.073 Sum_probs=82.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++++|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..++.. .++.+...+..+.......+.+||
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~fD 128 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE----SRIELLFGDALQLGEKLELYPLFD 128 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT----TTEEEECSCGGGSHHHHTTSCCEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECCHHHHHHhcccCCCcc
Confidence 46789999999999999998886 679999999 88999999999998764 457777655432111100146899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|++.... .....+++.+.++|+|||.+++..
T Consensus 129 ~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 129 VLFIDAAK---GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEEGGG---SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred EEEECCCH---HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 99986553 467889999999999999998863
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.1e-12 Score=105.68 Aligned_cols=102 Identities=12% Similarity=0.050 Sum_probs=80.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++++|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..++.. .++.+...++.+..+. ... |
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~--~~~-f 127 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI----DRVELQVGDPLGIAAG--QRD-I 127 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG----GGEEEEESCHHHHHTT--CCS-E
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC----ceEEEEEecHHHHhcc--CCC-C
Confidence 46789999999999999999875 679999999 88999999999988764 4677777654322111 124 9
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|++.. .......+++.+.++|+|||.+++..
T Consensus 128 D~v~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 128 DILFMDC---DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EEEEEET---TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CEEEEcC---ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 9998752 34667899999999999999988754
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=108.86 Aligned_cols=114 Identities=12% Similarity=-0.045 Sum_probs=84.1
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCC--CCCceEEEEEecCCCCC-CCcC--CC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGD--LRGSAVVTELTWGDDPD-QDLI--QP 194 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~--~~~~i~~~~l~w~~~~~-~~~~--~~ 194 (281)
++.+|||+|||+|..+..++.. +.+|+++|+ +.+++.++++...++.... ...++.+...|..+... ..+. ..
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 6789999999999988888864 568999999 8899999998877642100 01357777766544220 0122 34
Q ss_pred CCcEEEEccccCCC----CcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 195 LPDYVLGSDVIYSE----GAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 195 ~fD~Iia~d~iy~~----~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
+||+|+++.++++. .....+++.+.++|+|||.++++....
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 89999999998764 446789999999999999998886643
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-11 Score=107.17 Aligned_cols=157 Identities=17% Similarity=0.199 Sum_probs=99.9
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
.++..|.+.|... ....++++|||+|||||.++..+++.|+ +|+++|+ +.|++.+.++ + .++..
T Consensus 68 rg~~Kl~~~l~~~----~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~-------~rv~~ 133 (291)
T 3hp7_A 68 RGGLKLEKALAVF----NLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D-------DRVRS 133 (291)
T ss_dssp TTHHHHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C-------TTEEE
T ss_pred chHHHHHHHHHhc----CCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C-------cccce
Confidence 4466676676653 1235788999999999999999988886 8999999 8888764432 1 11211
Q ss_pred EE-EecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe---------------eeChh----
Q 023543 179 TE-LTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE---------------LRNDS---- 238 (281)
Q Consensus 179 ~~-l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~---------------~r~~~---- 238 (281)
.. .+........++.++||+|++ |+.+. .+..++..+.++|+|||.+++... .|++.
T Consensus 134 ~~~~ni~~l~~~~l~~~~fD~v~~-d~sf~--sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~ 210 (291)
T 3hp7_A 134 MEQYNFRYAEPVDFTEGLPSFASI-DVSFI--SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEK 210 (291)
T ss_dssp ECSCCGGGCCGGGCTTCCCSEEEE-CCSSS--CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHH
T ss_pred ecccCceecchhhCCCCCCCEEEE-EeeHh--hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHH
Confidence 11 010000111223345999886 44433 458899999999999999887621 12222
Q ss_pred HHHHHHHHHh-cCCeEEEEecCCCCCCCCCCcEEEEE
Q 023543 239 VLEYFLEAAM-KDFVIGRVEQTQWHPDYCSPRVVVYI 274 (281)
Q Consensus 239 ~~~~fl~~~~-~~f~v~~i~~~~~~~~~~~~~~~i~~ 274 (281)
..+.+.+.+. .||.+..+....+.-.-.+..|.+|.
T Consensus 211 ~~~~v~~~~~~~Gf~v~~~~~spi~g~~gn~e~l~~~ 247 (291)
T 3hp7_A 211 VLETVTAFAVDYGFSVKGLDFSPIQGGHGNIEFLAHL 247 (291)
T ss_dssp HHHHHHHHHHHTTEEEEEEEECSSCCGGGCCCEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCcCHHHHHHh
Confidence 3344455444 49999999877765555566777664
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.6e-12 Score=110.65 Aligned_cols=105 Identities=14% Similarity=0.223 Sum_probs=76.7
Q ss_pred CCCeEEEECCCcCHHHHHH-----HH-cCCEE--EEEec-hhHHHHHHHHHHHh-hcCCCCCCceEEEEEecCCCCCCC-
Q 023543 122 HGKKIVELGSGCGLVGCIA-----AL-LGAQV--ILTDL-PDRLRLLKKNIENN-LRHGDLRGSAVVTELTWGDDPDQD- 190 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~-----a~-~g~~V--~~tD~-~~~l~~~~~N~~~n-~~~~~~~~~i~~~~l~w~~~~~~~- 190 (281)
++.+|||||||+|.++..+ ++ .+..| +++|. ++|++.+++++... +. .++.+. |.......
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-----~~v~~~---~~~~~~~~~ 123 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-----ENVKFA---WHKETSSEY 123 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-----TTEEEE---EECSCHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-----CcceEE---EEecchhhh
Confidence 4679999999999765432 22 24444 99999 88999999887653 22 234432 22211111
Q ss_pred -------cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 191 -------LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 191 -------~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+.+.+||+|+++.++++..+...+++.+.++|||||.++++...
T Consensus 124 ~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 124 QSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp HHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 23578999999999999999999999999999999999887543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=105.22 Aligned_cols=129 Identities=14% Similarity=0.098 Sum_probs=93.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC----
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI---- 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~---- 192 (281)
.++++|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..++.. .++.+...+..+... .+.
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~----~~i~~~~~d~~~~~~-~~~~~~~ 142 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE----HKIDLRLKPALETLD-ELLAAGE 142 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT----TTEEEEESCHHHHHH-HHHHTTC
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC----CeEEEEEcCHHHHHH-HHHhcCC
Confidence 46789999999999999999874 568999999 88999999999998764 467777754322111 111
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC------------hhHHHHHHHHHhc--CCeEEEEe
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN------------DSVLEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~------------~~~~~~fl~~~~~--~f~v~~i~ 257 (281)
..+||+|++... ......+++.+.++|+|||.+++...... ...++.|.+.+.. .|....++
T Consensus 143 ~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 218 (229)
T 2avd_A 143 AGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLP 218 (229)
T ss_dssp TTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEEC
T ss_pred CCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEe
Confidence 167999997433 45678899999999999999888654321 1234567776653 56666554
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.6e-11 Score=100.74 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=85.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..+..+ +.+|+++|+ +. + +.+...+..+ ..+.+.+||+|
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~-----------~---------~~~~~~d~~~---~~~~~~~fD~v 119 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI---RNPVHCFDLASL-----------D---------PRVTVCDMAQ---VPLEDESVDVA 119 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS-----------S---------TTEEESCTTS---CSCCTTCEEEE
T ss_pred CCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC-----------C---------ceEEEecccc---CCCCCCCEeEE
Confidence 46789999999999887766 478999999 44 1 1233433322 22345689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEecCCCCCCCCCCcEEEEEEEec
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQTQWHPDYCSPRVVVYILVKK 278 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~~~~~~~~~~~~~~i~~~~~k 278 (281)
+++.++++ .....+++.+.++|+|||.++++.........+.+.+.+. .||.+..... ....+.++..+|.
T Consensus 120 ~~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-------~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 120 VFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDL-------TNSHFFLFDFQKT 191 (215)
T ss_dssp EEESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEEC-------CSTTCEEEEEEEC
T ss_pred EEehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEec-------CCCeEEEEEEEec
Confidence 99999974 7889999999999999999998865442222344555555 4898777542 2223455555554
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=110.44 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=79.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC---EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA---QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~---~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..++.+++.+. +|+++|+ +++++.+++|+..++.. ++.+...|..+.. ....+|
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-----~v~~~~~d~~~~~---~~~~~f 145 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-----NVIFVCGDGYYGV---PEFSPY 145 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCGGGCC---GGGCCE
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CeEEEECChhhcc---ccCCCe
Confidence 4688999999999999999988654 5999999 88999999999988765 5777776654322 124689
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|++..++.+.. +.+.++|+|||++++...
T Consensus 146 D~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 146 DVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp EEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred EEEEEcCCHHHHH------HHHHHhcCCCcEEEEEEC
Confidence 9999999886644 577889999999988754
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=107.31 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=81.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCc-----
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL----- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~----- 191 (281)
.++++|||+|||+|..++.+++. +.+|+++|+ +++++.+++|+..++.. .++.+...+..+..+ .+
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~----~~i~~~~gda~~~l~-~l~~~~~ 152 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD----HKIDFREGPALPVLD-EMIKDEK 152 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHH-HHHHSGG
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCeEEEECCHHHHHH-HHHhccC
Confidence 46789999999999999999874 679999999 88999999999988764 467777755422111 11
Q ss_pred CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...+||+|++... ......+++.+.++|+|||.+++..
T Consensus 153 ~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 153 NHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp GTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred CCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 1468999987432 4567899999999999999988754
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.7e-11 Score=94.55 Aligned_cols=133 Identities=13% Similarity=0.056 Sum_probs=87.8
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
...+.+++... ....++.+|||+|||+|..+..+++. +.+|+++|++.+++. .++.+.
T Consensus 7 ~~~l~~~~~~~----~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~---------------~~~~~~ 67 (180)
T 1ej0_A 7 WFKLDEIQQSD----KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI---------------VGVDFL 67 (180)
T ss_dssp HHHHHHHHHHH----CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC---------------TTEEEE
T ss_pred HHHHHHHHHHh----CCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc---------------CcEEEE
Confidence 34455555432 11346789999999999999988875 368999999335421 256666
Q ss_pred EEecCCCC-----CCCcCCCCCcEEEEccccCCCCcH-----------HHHHHHHHHhhCCCcEEEEEEeeeChhHHHHH
Q 023543 180 ELTWGDDP-----DQDLIQPLPDYVLGSDVIYSEGAV-----------GDLLDTLLQLCGTQTTIFLAGELRNDSVLEYF 243 (281)
Q Consensus 180 ~l~w~~~~-----~~~~~~~~fD~Iia~d~iy~~~~~-----------~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~f 243 (281)
..++.+.. ...+.+.+||+|++..+++..... ..+++.+.++|+|||.+++........ ..+
T Consensus 68 ~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~--~~~ 145 (180)
T 1ej0_A 68 QGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGF--DEY 145 (180)
T ss_dssp ESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTH--HHH
T ss_pred EcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcH--HHH
Confidence 65543210 000345689999998887765544 789999999999999998876544332 335
Q ss_pred HHHHhcCCeEEEE
Q 023543 244 LEAAMKDFVIGRV 256 (281)
Q Consensus 244 l~~~~~~f~v~~i 256 (281)
.+.+...|....+
T Consensus 146 ~~~~~~~~~~~~~ 158 (180)
T 1ej0_A 146 LREIRSLFTKVKV 158 (180)
T ss_dssp HHHHHHHEEEEEE
T ss_pred HHHHHHhhhhEEe
Confidence 5555555654444
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=106.05 Aligned_cols=128 Identities=16% Similarity=0.056 Sum_probs=90.9
Q ss_pred CCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 123 GKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
+.+|||||||+|..++.+++. +.+|+++|+ +++++.+++|++.++.. ..++.+...+..+... .+.+.+||+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~~i~~~~gda~~~l~-~~~~~~fD~ 132 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS---PSRVRFLLSRPLDVMS-RLANDSYQL 132 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC---GGGEEEECSCHHHHGG-GSCTTCEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---cCcEEEEEcCHHHHHH-HhcCCCcCe
Confidence 349999999999999998873 679999999 88999999999998753 1367777644322111 122578999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee----------Chh--HHHHHHHHHhc--CCeEEEEe
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR----------NDS--VLEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r----------~~~--~~~~fl~~~~~--~f~v~~i~ 257 (281)
|+... .......+++.+.++|+|||.+++..... ... .++.|.+.+.. +|....++
T Consensus 133 V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 202 (221)
T 3dr5_A 133 VFGQV---SPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLP 202 (221)
T ss_dssp EEECC---CTTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEES
T ss_pred EEEcC---cHHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEee
Confidence 98643 24567789999999999999988753322 111 34667776664 56665554
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-11 Score=110.52 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=86.7
Q ss_pred CCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 123 GKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
+++|||+|||+|..+..+++. +.+++++|++.+++.+++++..++.. +++.+...|+.+... ....+||+|+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~--~~~~~~D~v~ 253 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLG----GRVEFFEKNLLDARN--FEGGAADVVM 253 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCG----GGEEEEECCTTCGGG--GTTCCEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCC----CceEEEeCCcccCcc--cCCCCccEEE
Confidence 789999999999999988875 56899999988999999999887765 478888876543210 1335699999
Q ss_pred EccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEee
Q 023543 201 GSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 201 a~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+..++++... ...+++.+.+.|+|||.+++....
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 254 LNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 9999987654 589999999999999999887643
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=116.63 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=81.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|.+++.+++.++ +|+++|++.+++.+++|+..|++. .++.+...++.+. .+ ..+||+|
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~----~~v~~~~~d~~~~---~~-~~~fD~I 228 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLT----DRIVVIPGKVEEV---SL-PEQVDII 228 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCT----TTEEEEESCTTTC---CC-SSCEEEE
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCC----CcEEEEECchhhC---cc-CCCeEEE
Confidence 5788999999999999999998765 899999944999999999999875 5788888776542 12 2579999
Q ss_pred EEccccCCC--CcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++..+.|+. ......+..+.++|+|||.+++.
T Consensus 229 vs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 229 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp ECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred EEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 997776653 34455666778999999998753
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-10 Score=115.87 Aligned_cols=124 Identities=15% Similarity=0.061 Sum_probs=90.2
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHHhhcC-CCCCCceE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRH-GDLRGSAV 177 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~n~~~-~~~~~~i~ 177 (281)
.....+++...+. ..++++|||||||+|.+++.+++.+ .+|+++|+ +.+++.+++++...... .....++.
T Consensus 706 ~eqRle~LLelL~----~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVe 781 (950)
T 3htx_A 706 SKQRVEYALKHIR----ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSAT 781 (950)
T ss_dssp HHHHHHHHHHHHH----HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEE
T ss_pred HHHHHHHHHHHhc----ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceE
Confidence 3344555554322 2478899999999999999999987 68999999 88999999877654211 00113677
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEee
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+...|..+ ......+||+|++.+++++... ...+++.+.++|+|| .++++.+.
T Consensus 782 fiqGDa~d---Lp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 782 LYDGSILE---FDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEESCTTS---CCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred EEECchHh---CCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 77755433 3334578999999999988665 346999999999999 77776543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.1e-11 Score=109.07 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=78.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
++.+|||+|||+|..+..+++. +.+++++|++.++. ++++...+.. .++.+...|..+ .++ +||+|
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~~----~~v~~~~~d~~~----~~p--~~D~v 251 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDVA----GRWKVVEGDFLR----EVP--HADVH 251 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGGT----TSEEEEECCTTT----CCC--CCSEE
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCCC----CCeEEEecCCCC----CCC--CCcEE
Confidence 5679999999999999988874 44799999976655 4343333333 578888866531 122 89999
Q ss_pred EEccccCCCCcH--HHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGAV--GDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~~--~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++..++|+..+. ..+++.+++.|+|||.+++....
T Consensus 252 ~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 252 VLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred EEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 999999987766 69999999999999999887653
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=104.51 Aligned_cols=101 Identities=14% Similarity=0.122 Sum_probs=78.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..++.+++.+ .+|+++|+ +.+++.+++|+..++.. ++.+...+..... ....+||+
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~---~~~~~fD~ 161 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-----NVHVILGDGSKGF---PPKAPYDV 161 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCGGGCC---GGGCCEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEECCcccCC---CCCCCccE
Confidence 467899999999999999999866 78999999 88999999999988764 4777665541111 12346999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|++..++.+.. +.+.++|+|||.+++.....
T Consensus 162 Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 162 IIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp EEECSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred EEECCcHHHHH------HHHHHhcCCCcEEEEEEecC
Confidence 99988875532 46788999999999887644
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=103.51 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=77.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..++.+++. | .+|+++|+ +.+++.+++|+..+ .++.+...|..+.........+|
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-------~~v~~~~~d~~~~~~~~~~~~~~ 144 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-------RNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-------TTEEEEECCTTCGGGGTTTCCCE
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-------CCCEEEEccCCCcchhhcccCCc
Confidence 46789999999999999999875 3 68999999 88999999988765 25777776554311101123579
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|++... .+.....+++.+.++|+|||.+++...
T Consensus 145 D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~ 179 (227)
T 1g8a_A 145 DVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp EEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99996433 344445669999999999999888743
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-11 Score=103.59 Aligned_cols=113 Identities=7% Similarity=-0.070 Sum_probs=78.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCC---CCCceEEEEEecCCCCCCCcCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGD---LRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~---~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
.++.+|||+|||+|..++.+++.+ .+|+++|+ +.+++.+++|+..+..... ...++.+...|..+.....+...
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 367899999999999999999875 47999999 8899999999988721100 01367777766543222223456
Q ss_pred CCcEEEEccc--cCCCC------cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 195 LPDYVLGSDV--IYSEG------AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 195 ~fD~Iia~d~--iy~~~------~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.+|.|+.... .+... ....+++.+.++|+|||.+++...
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 7888875422 11100 115899999999999999888643
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=107.37 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=62.0
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC---CCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI---QPL 195 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~---~~~ 195 (281)
++.+|||+|||+|.+++.++.. +.+|+++|+ +.+++.+++|+..+++. +++.+...|..+.....+. +.+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~~~ 140 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS----DLIKVVKVPQKTLLMDALKEESEII 140 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC----ccEEEEEcchhhhhhhhhhcccCCc
Confidence 5789999999999998888764 689999999 88999999999998765 4588887664331111122 257
Q ss_pred CcEEEEccccCC
Q 023543 196 PDYVLGSDVIYS 207 (281)
Q Consensus 196 fD~Iia~d~iy~ 207 (281)
||+|+++.+.+.
T Consensus 141 fD~i~~npp~~~ 152 (254)
T 2h00_A 141 YDFCMCNPPFFA 152 (254)
T ss_dssp BSEEEECCCCC-
T ss_pred ccEEEECCCCcc
Confidence 999998765543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-10 Score=95.13 Aligned_cols=133 Identities=14% Similarity=0.005 Sum_probs=82.1
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc----CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL----GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~----g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
+..|.+.+... ....++.+|||||||+|.+++.+++. +.+|+++|++.+. .. .++.+
T Consensus 7 ~~kl~~~~~~~----~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~-----~~v~~ 67 (201)
T 2plw_A 7 AYKLIELDNKY----LFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PI-----PNVYF 67 (201)
T ss_dssp HHHHHHHHHHH----CCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CC-----TTCEE
T ss_pred HHHHHHHHHHc----CCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CC-----CCceE
Confidence 44555544432 11346789999999999999999875 3689999994431 01 24566
Q ss_pred EEEecCCCCCC----------------------CcCCCCCcEEEEccccCCCC----cH-------HHHHHHHHHhhCCC
Q 023543 179 TELTWGDDPDQ----------------------DLIQPLPDYVLGSDVIYSEG----AV-------GDLLDTLLQLCGTQ 225 (281)
Q Consensus 179 ~~l~w~~~~~~----------------------~~~~~~fD~Iia~d~iy~~~----~~-------~~ll~~l~~ll~~~ 225 (281)
...|+.+.... .+.+.+||+|++...++... +. ..+++.+.++|+||
T Consensus 68 ~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg 147 (201)
T 2plw_A 68 IQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIG 147 (201)
T ss_dssp EECCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred EEccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC
Confidence 66555432100 02346899999866554421 11 24788899999999
Q ss_pred cEEEEEEeeeChhHHHHHHHHHhcCCeEEEE
Q 023543 226 TTIFLAGELRNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 226 g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i 256 (281)
|.+++....... ...+...+...|....+
T Consensus 148 G~lv~~~~~~~~--~~~l~~~l~~~f~~v~~ 176 (201)
T 2plw_A 148 GTYIVKMYLGSQ--TNNLKTYLKGMFQLVHT 176 (201)
T ss_dssp EEEEEEEECSTT--HHHHHHHHHTTEEEEEE
T ss_pred CEEEEEEeCCCC--HHHHHHHHHHHHheEEE
Confidence 998875443222 23455556666654333
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.8e-11 Score=102.08 Aligned_cols=126 Identities=6% Similarity=-0.072 Sum_probs=82.9
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcC-CCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRH-GDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~-~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
++.+|||||||+|..++.+|+. +.+|+|+|+ +.+++.+++|+...... .....++.+...|..+..+..+....||
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 5668999999999999999875 468999999 88999999988652110 0012468887766533111113456899
Q ss_pred EEEEccccCCCC--------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc
Q 023543 198 YVLGSDVIYSEG--------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK 249 (281)
Q Consensus 198 ~Iia~d~iy~~~--------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~ 249 (281)
.|+..-.--+.. ..+.+++.+.++|+|||.+++.... ....+...+.+..
T Consensus 126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~--~~~~~~~~~~l~~ 183 (235)
T 3ckk_A 126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV--LELHDWMCTHFEE 183 (235)
T ss_dssp EEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC--HHHHHHHHHHHHT
T ss_pred EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC--HHHHHHHHHHHHH
Confidence 987642211110 1257999999999999999887543 2333334444443
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=103.95 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=80.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-------EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-Cc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-------QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DL 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-------~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~ 191 (281)
.++.+|||+|||+|..++.+++... +|+++|+ +++++.+++|+..++.......++.+...|..+.... ..
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence 4678999999999999999988653 8999999 8899999999998863000013677777665432100 02
Q ss_pred CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 192 IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
...+||+|++...+.+ +++.+.++|+|||.+++....
T Consensus 159 ~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 159 ELGLFDAIHVGASASE------LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHCCEEEEEECSBBSS------CCHHHHHHEEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEEEEcc
Confidence 3467999999887753 457889999999999888764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-10 Score=106.25 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=81.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++++|||+| |+|.+++.+++.++ +|+++|+ +.+++.+++|+..+++. ++.+...|+.+..+. ..+.+||
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-----~v~~~~~D~~~~l~~-~~~~~fD 243 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-----DIEIFTFDLRKPLPD-YALHKFD 243 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-----CEEEECCCTTSCCCT-TTSSCBS
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CEEEEEChhhhhchh-hccCCcc
Confidence 4688999999 99999999998765 8999999 89999999999999763 577777665442211 1235799
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCc-EEEEEEee
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQT-TIFLAGEL 234 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g-~~~l~~~~ 234 (281)
+|++..+ |.......+++.+.++|+||| .++++...
T Consensus 244 ~Vi~~~p-~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 244 TFITDPP-ETLEAIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp EEEECCC-SSHHHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred EEEECCC-CchHHHHHHHHHHHHHcccCCeEEEEEEec
Confidence 9997654 443346889999999999999 44555544
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=113.38 Aligned_cols=132 Identities=15% Similarity=0.060 Sum_probs=92.4
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-cCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~~~~~fD~ 198 (281)
++++|||+|||+|.+++.+++.|+ +|+++|+ +.+++.+++|+..|++. .++.+...|..+..... ....+||+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~----~~v~~~~~d~~~~~~~~~~~~~~fD~ 292 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE----DRMKFIVGSAFEEMEKLQKKGEKFDI 292 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEECCHHHHHHHHHhhCCCCCE
Confidence 788999999999999999999876 8999999 88999999999999865 36777776543211100 01458999
Q ss_pred EEEccccCCC---------CcHHHHHHHHHHhhCCCcEEEEEEeeeCh--hHHHHHHH-HHh-cCCeEEEEe
Q 023543 199 VLGSDVIYSE---------GAVGDLLDTLLQLCGTQTTIFLAGELRND--SVLEYFLE-AAM-KDFVIGRVE 257 (281)
Q Consensus 199 Iia~d~iy~~---------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~--~~~~~fl~-~~~-~~f~v~~i~ 257 (281)
|++....+.. .....++..+.++|+|||.++++...... ..+...+. .+. .+..+..+.
T Consensus 293 Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~ 364 (396)
T 2as0_A 293 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLE 364 (396)
T ss_dssp EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESS
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 9975443332 44677888999999999988777654332 22233332 222 355666555
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3e-11 Score=111.52 Aligned_cols=110 Identities=17% Similarity=0.019 Sum_probs=83.0
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-cCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~~~~~fD~I 199 (281)
++++|||+|||+|.+++.++..+.+|+++|+ +.+++.+++|+..|+.. ++.+...|..+..... ..+.+||+|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~-----~~~~~~~d~~~~~~~~~~~~~~fD~I 283 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLG-----NVRVLEANAFDLLRRLEKEGERFDLV 283 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCT-----TEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-----CceEEECCHHHHHHHHHhcCCCeeEE
Confidence 6789999999999999999988668999999 88999999999999875 4777775543211100 014689999
Q ss_pred EEccccCCC---------CcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 200 LGSDVIYSE---------GAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 200 ia~d~iy~~---------~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
++....+.. ..+..++..+.++|+|||.++++.....
T Consensus 284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 974333221 3467788999999999999888865543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-11 Score=111.84 Aligned_cols=110 Identities=10% Similarity=0.041 Sum_probs=80.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHH-------HhhcCCCCCCceEEEEEecCCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIE-------NNLRHGDLRGSAVVTELTWGDDPDQ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~-------~n~~~~~~~~~i~~~~l~w~~~~~~ 189 (281)
..++.+|||||||+|.+.+.+|. .++ +|+|+|+ +.+++.|++|++ .+++. ..++.+...|.. +.
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~---~~rVefi~GD~~---~l 244 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK---HAEYTLERGDFL---SE 244 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC---CCEEEEEECCTT---SH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC---CCCeEEEECccc---CC
Confidence 35788999999999999998886 465 5999999 789999988764 33432 146777775433 22
Q ss_pred CcCC--CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 190 DLIQ--PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 190 ~~~~--~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
.+.+ ..||+|+++.+++ .......+..+.+.|+|||++++......
T Consensus 245 p~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 245 EWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp HHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred ccccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 2222 4699999876654 55666777788899999999987755544
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.22 E-value=8.8e-11 Score=103.09 Aligned_cols=118 Identities=17% Similarity=0.147 Sum_probs=86.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHh-h-cCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENN-L-RHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n-~-~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
.++.+|||+|||+|.+++.++.. +.+|+++|+ +++++.+++|+..+ + .. .++.+...|..+. .+.+.
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~----~~v~~~~~d~~~~---~~~~~ 170 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP----DNWRLVVSDLADS---ELPDG 170 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC----TTEEEECSCGGGC---CCCTT
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC----CcEEEEECchHhc---CCCCC
Confidence 46789999999999999998874 568999999 88999999999887 4 22 3677776554332 23356
Q ss_pred CCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh--cCCe
Q 023543 195 LPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM--KDFV 252 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~--~~f~ 252 (281)
+||+|++. ......+++.+.++|+|||.+++...... ....+++.+. .+|.
T Consensus 171 ~~D~v~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 171 SVDRAVLD-----MLAPWEVLDAVSRLLVAGGVLMVYVATVT--QLSRIVEALRAKQCWT 223 (280)
T ss_dssp CEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHHSSBC
T ss_pred ceeEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHHhcCCcC
Confidence 79999983 22445789999999999999888776432 2344555554 3554
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-11 Score=103.25 Aligned_cols=130 Identities=17% Similarity=0.113 Sum_probs=92.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-CcCC--
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQ-- 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~~~-- 193 (281)
.++++|||+|||+|..++.+++. +.+|+++|+ +++++.+++|+..++.. .++.+...+..+.... ...+
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~----~~i~~~~~d~~~~l~~l~~~~~~ 146 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA----EKISLRLGPALATLEQLTQGKPL 146 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG----GGEEEEESCHHHHHHHHHTSSSC
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHHHHHhcCCC
Confidence 46789999999999999999874 568999999 88999999999988765 4677776543211110 0012
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC------------hhHHHHHHHHHhc--CCeEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN------------DSVLEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~------------~~~~~~fl~~~~~--~f~v~~i~ 257 (281)
.+||+|++... ......+++.+.++|+|||.+++...... ...+..|.+.+.. .|....++
T Consensus 147 ~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 221 (232)
T 3cbg_A 147 PEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIP 221 (232)
T ss_dssp CCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEEC
T ss_pred CCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEE
Confidence 67999986533 45678899999999999999988644322 1234567776654 45554443
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=106.55 Aligned_cols=121 Identities=14% Similarity=0.091 Sum_probs=85.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|.+++.++..+. +|+++|+ +.+++.+++|+..+++. .++.+...|..+ ......+||
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~----~~i~~~~~D~~~---~~~~~~~fD 288 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVL----DKIKFIQGDATQ---LSQYVDSVD 288 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCG----GGCEEEECCGGG---GGGTCSCEE
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC----CceEEEECChhh---CCcccCCcC
Confidence 4678999999999999999999887 8999999 88999999999999874 467787766543 223346899
Q ss_pred EEEEccccCCCC---------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEE
Q 023543 198 YVLGSDVIYSEG---------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRV 256 (281)
Q Consensus 198 ~Iia~d~iy~~~---------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i 256 (281)
+|+++.+ |... .+..+++.+.++| +++.++++. +...++. .+. .||.+.+.
T Consensus 289 ~Ii~npP-yg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~---~~~~~~~---~~~~~G~~~~~~ 349 (373)
T 3tm4_A 289 FAISNLP-YGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITT---EKKAIEE---AIAENGFEIIHH 349 (373)
T ss_dssp EEEEECC-CC------CCHHHHHHHHHHHHHHHE-EEEEEEEES---CHHHHHH---HHHHTTEEEEEE
T ss_pred EEEECCC-CCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEEC---CHHHHHH---HHHHcCCEEEEE
Confidence 9998544 4321 2477888888888 444444443 3333333 333 47876554
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-11 Score=101.92 Aligned_cols=108 Identities=12% Similarity=0.092 Sum_probs=72.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|..++.+++. +.+|+++|+ +.|++.+.+++..+.... ...++.+...|..+. .+.... |
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~-~~~~v~~~~~d~~~l---~~~~~~-d 100 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKG-GLPNLLYLWATAERL---PPLSGV-G 100 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGT-CCTTEEEEECCSTTC---CSCCCE-E
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhc-CCCceEEEecchhhC---CCCCCC-C
Confidence 46789999999999999999987 678999999 888886555444322110 013678877665432 222333 6
Q ss_pred EEEEccc---cC--CCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDV---IY--SEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~---iy--~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.|...-. .+ +..+...+++.+.++|+|||.+++...
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 101 ELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp EEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence 6662111 00 112237899999999999999998653
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-11 Score=103.91 Aligned_cols=123 Identities=15% Similarity=0.072 Sum_probs=84.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc------CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-cC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL------GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LI 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~------g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~~ 192 (281)
.++++|||||||+|..++.+++. +++|+++|+ +++++.++ +.. .++.+...|+.+..... ..
T Consensus 80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~----~~v~~~~gD~~~~~~l~~~~ 149 (236)
T 2bm8_A 80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDM----ENITLHQGDCSDLTTFEHLR 149 (236)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGC----TTEEEEECCSSCSGGGGGGS
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccC----CceEEEECcchhHHHHHhhc
Confidence 35689999999999999998876 678999999 88887776 111 36888876654320001 12
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHH-hhCCCcEEEEEEe-----eeChhHHHHHHHHHhcCCeEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQ-LCGTQTTIFLAGE-----LRNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~-ll~~~g~~~l~~~-----~r~~~~~~~fl~~~~~~f~v~~i 256 (281)
+.+||+|+.... + .....++..+.+ +|+|||++++... ..+...+..|++....+|.+...
T Consensus 150 ~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~~~ 216 (236)
T 2bm8_A 150 EMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDML 216 (236)
T ss_dssp SSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEETT
T ss_pred cCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEcch
Confidence 347999887544 2 367889999997 9999999988542 12333455666555457776543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-10 Score=98.02 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=71.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+|||||||+|..+..+|.. ..+|+++|+ +.+++.+.+.+..+ .++.+...|...........++
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-------~nv~~i~~Da~~~~~~~~~~~~ 146 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-------PNIFPLLADARFPQSYKSVVEN 146 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-------TTEEEEECCTTCGGGTTTTCCC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCeEEEEcccccchhhhccccc
Confidence 457899999999999998888864 348999999 77876555444432 2566666553321111112468
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
||+|++.-.. +.....+...+.++|+|||.++++..
T Consensus 147 ~D~I~~d~a~--~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 147 VDVLYVDIAQ--PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp EEEEEECCCC--TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEEEEecCCC--hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 9999875332 44445566677779999999988753
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.4e-11 Score=111.37 Aligned_cols=109 Identities=21% Similarity=0.246 Sum_probs=81.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-C-CEEEEEec-hhHHHHH-------HHHHHHhhcCCCCCCceEEEEEecCCCCCC-
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRLRLL-------KKNIENNLRHGDLRGSAVVTELTWGDDPDQ- 189 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g-~~V~~tD~-~~~l~~~-------~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~- 189 (281)
.++.+|||||||+|.+++.+|+. + .+|+++|+ +.+++.| ++|+..+++. ..++.+... +....
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~---~~nV~~i~g---D~~~~~ 314 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR---LNNVEFSLK---KSFVDN 314 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC---CCCEEEEES---SCSTTC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC---CCceEEEEc---Cccccc
Confidence 46889999999999999999984 5 47999999 7888888 8888887742 135666552 22211
Q ss_pred -Cc--CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 190 -DL--IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 190 -~~--~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
.+ ...+||+|+++.+++ ....+.+++.+.+.|+|||.+++......
T Consensus 315 ~~~~~~~~~FDvIvvn~~l~-~~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 315 NRVAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp HHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred cccccccCCCCEEEEeCccc-cccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 01 136899999877774 45677788999999999999988754433
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-11 Score=104.23 Aligned_cols=104 Identities=14% Similarity=0.082 Sum_probs=81.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCc-----
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL----- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~----- 191 (281)
.++++|||+|||+|..++.+++. +.+|+++|+ +++++.+++|++.++.. .++.+...++.+..+ .+
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~----~~i~~~~gda~~~l~-~l~~~~~ 143 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE----HKINFIESDAMLALD-NLLQGQE 143 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHH-HHHHSTT
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHH-HHHhccC
Confidence 46789999999999999998874 679999999 88999999999988764 467777755432111 11
Q ss_pred CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...+||+|+... .......+++.+.++|+|||.+++..
T Consensus 144 ~~~~fD~I~~d~---~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 144 SEGSYDFGFVDA---DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp CTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCcCEEEECC---chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 146899998642 34567899999999999999987754
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-10 Score=101.42 Aligned_cols=141 Identities=15% Similarity=0.130 Sum_probs=95.6
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH--cC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCce
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL--LG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~--~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
.++.+++..+. ..+|.+|||+|||+|..++.++. .+ .+|+++|+ +.+++.+++|++.++.. ++
T Consensus 70 ~~s~l~~~~l~--------~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-----~v 136 (274)
T 3ajd_A 70 ISSMIPPIVLN--------PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-----NT 136 (274)
T ss_dssp SGGGHHHHHHC--------CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-----SE
T ss_pred HHHHHHHHHhC--------CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-----cE
Confidence 44555555553 24688999999999999988886 34 68999999 88999999999998764 57
Q ss_pred EEEEEecCCCCCCCc--CCCCCcEEEEccccCC------------------CCcHHHHHHHHHHhhCCCcEEEEEEee--
Q 023543 177 VVTELTWGDDPDQDL--IQPLPDYVLGSDVIYS------------------EGAVGDLLDTLLQLCGTQTTIFLAGEL-- 234 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~--~~~~fD~Iia~d~iy~------------------~~~~~~ll~~l~~ll~~~g~~~l~~~~-- 234 (281)
.+...|..+.. ..+ ...+||+|++.-.... ......+++.+.++|+|||.++++...
T Consensus 137 ~~~~~D~~~~~-~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 137 IIINADMRKYK-DYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp EEEESCHHHHH-HHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred EEEeCChHhcc-hhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 77765532211 000 1467999997422211 145688999999999999998776432
Q ss_pred --eChhHHHHHHHHHhcCCeEEEE
Q 023543 235 --RNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 235 --r~~~~~~~fl~~~~~~f~v~~i 256 (281)
.+...++.|++.. .+|++..+
T Consensus 216 ~~ene~~v~~~l~~~-~~~~~~~~ 238 (274)
T 3ajd_A 216 VEENEEVIKYILQKR-NDVELIII 238 (274)
T ss_dssp TTSSHHHHHHHHHHC-SSEEEECC
T ss_pred hHHhHHHHHHHHHhC-CCcEEecC
Confidence 2344555555432 35665544
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-11 Score=104.25 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=70.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhH-HHHH---HHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDR-LRLL---KKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~-l~~~---~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~ 193 (281)
.++.+|||||||+|..++.+++ .+.+|+++|+ ++. ++.+ ++|+..++.. ++.+...+..+. +.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-----~v~~~~~d~~~l-----~~ 92 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-----NVVFVIAAAESL-----PF 92 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-----SEEEECCBTTBC-----CG
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-----CeEEEEcCHHHh-----hh
Confidence 3677999999999999999884 5678999999 454 5555 7777776654 677776654332 12
Q ss_pred CCCcEEEEccccCCCC--------cHHHHHHHHHHhhCCCcEEEE
Q 023543 194 PLPDYVLGSDVIYSEG--------AVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~--------~~~~ll~~l~~ll~~~g~~~l 230 (281)
..+|.|.+..+.+... ....+++.+.++|||||.+++
T Consensus 93 ~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 93 ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 2346555544443221 125688999999999999988
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.7e-10 Score=93.58 Aligned_cols=95 Identities=21% Similarity=0.322 Sum_probs=68.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++++|||+|||+|.+++.++..+. +|+++|+ +.+++.+++|+. ++.+...|..+ + ..+||+
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----------~~~~~~~d~~~-----~-~~~~D~ 113 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----------GVNFMVADVSE-----I-SGKYDT 113 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----------TSEEEECCGGG-----C-CCCEEE
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC----------CCEEEECcHHH-----C-CCCeeE
Confidence 4678999999999999999998876 6999999 889999998865 24556655432 1 257999
Q ss_pred EEEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|++..++++... ...+++.+.+.+ |.+++++..
T Consensus 114 v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~ 148 (200)
T 1ne2_A 114 WIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGNA 148 (200)
T ss_dssp EEECCCC-------CHHHHHHHHHHE---EEEEEEEEG
T ss_pred EEECCCchhccCchhHHHHHHHHHhc---CcEEEEEcC
Confidence 999877766432 346777777777 556666543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-11 Score=102.21 Aligned_cols=105 Identities=15% Similarity=0.072 Sum_probs=78.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..+..+++. + .+|+++|+ +.+++.+++|+..++.......++.+...+.... .....+|
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~f 152 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG---YAEEAPY 152 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC---CGGGCCE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC---cccCCCc
Confidence 46789999999999999988875 4 58999999 8899999999988753000013677777665322 1234679
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|+|++...+. .+++.+.++|+|||.++++...
T Consensus 153 D~i~~~~~~~------~~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 153 DAIHVGAAAP------VVPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEEECSBBS------SCCHHHHHTEEEEEEEEEEESC
T ss_pred CEEEECCchH------HHHHHHHHhcCCCcEEEEEEec
Confidence 9999887763 3457888999999999887653
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-10 Score=108.99 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=94.8
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--C-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCce
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--G-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
.++.+++..+. ..++.+|||+|||+|..++.++.. + .+|+++|+ +.+++.+++|++.++.. ++
T Consensus 246 ~~s~l~~~~l~--------~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-----~v 312 (450)
T 2yxl_A 246 EASAVASIVLD--------PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-----IV 312 (450)
T ss_dssp HHHHHHHHHHC--------CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-----SE
T ss_pred chhHHHHHhcC--------CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-----cE
Confidence 44555555543 346789999999999999888873 3 68999999 88999999999998864 57
Q ss_pred EEEEEecCCCCCCCcCCCCCcEEEE------ccccCCCCcH----------------HHHHHHHHHhhCCCcEEEEEEee
Q 023543 177 VVTELTWGDDPDQDLIQPLPDYVLG------SDVIYSEGAV----------------GDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~~~~fD~Iia------~d~iy~~~~~----------------~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
.+...|..+.. ..+.+.+||+|++ ..++....+. ..+++.+.++|+|||.++++...
T Consensus 313 ~~~~~D~~~~~-~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 313 KPLVKDARKAP-EIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp EEECSCTTCCS-SSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred EEEEcChhhcc-hhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 77665543321 1133367999995 2223222221 67899999999999998766432
Q ss_pred e----ChhHHHHHHHHHhcCCeEEEE
Q 023543 235 R----NDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 235 r----~~~~~~~fl~~~~~~f~v~~i 256 (281)
- +...++.|++.. .+|....+
T Consensus 392 ~~~~ene~~v~~~l~~~-~~~~~~~~ 416 (450)
T 2yxl_A 392 IFKEENEKNIRWFLNVH-PEFKLVPL 416 (450)
T ss_dssp CCGGGTHHHHHHHHHHC-SSCEECCC
T ss_pred CChhhHHHHHHHHHHhC-CCCEEeec
Confidence 2 334555565432 36776554
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=7.7e-10 Score=101.01 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=82.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..++|||+|||+|..++.+++. +.+++..|.+++++.+++++...+. +++.+...|..+ . +.+.+|+|
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~-----~rv~~~~gD~~~---~--~~~~~D~~ 248 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEE-----EQIDFQEGDFFK---D--PLPEADLY 248 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--C-----CSEEEEESCTTT---S--CCCCCSEE
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhccc-----CceeeecCcccc---C--CCCCceEE
Confidence 4679999999999999988875 4578999999999999988765442 578888866432 2 23568999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+...++|+..+ ...+++.+++.|+|||++++....
T Consensus 249 ~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~ 285 (353)
T 4a6d_A 249 ILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESL 285 (353)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred EeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence 99999998665 467899999999999999988754
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=102.94 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=81.8
Q ss_pred CCeEEEECCCc---CHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC--------
Q 023543 123 GKKIVELGSGC---GLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-------- 188 (281)
Q Consensus 123 ~~~VLELGcGt---G~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-------- 188 (281)
..+|||||||+ |.+...+++ .+.+|+++|+ +.|++.+++++..+ .++.+...|..+...
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~-------~~v~~~~~D~~~~~~~~~~~~~~ 150 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD-------PNTAVFTADVRDPEYILNHPDVR 150 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC-------TTEEEEECCTTCHHHHHHSHHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC-------CCeEEEEeeCCCchhhhccchhh
Confidence 47999999999 987766665 3679999999 89999999987432 367777766543100
Q ss_pred CCcCCCCCcEEEEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 189 QDLIQPLPDYVLGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
..+...+||+|++..++++... ...+++.+.+.|+|||.++++....
T Consensus 151 ~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 151 RMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred ccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 0122247999999999988554 8999999999999999999887654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-10 Score=104.72 Aligned_cols=133 Identities=13% Similarity=-0.000 Sum_probs=89.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHh--hcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENN--LRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n--~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.++++|||||||+|.++..+++. +.+|+++|+ +.+++.+++++... ... ..++.+...|..+... .....+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~---~~~v~~~~~D~~~~~~-~~~~~~ 169 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLA---DPRATVRVGDGLAFVR-QTPDNT 169 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG---CTTEEEEESCHHHHHH-SSCTTC
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccC---CCcEEEEECcHHHHHH-hccCCc
Confidence 35689999999999999998875 458999999 88999999987431 111 2467777755432110 012468
Q ss_pred CcEEEEccccCCCCc--H--HHHHHHHHHhhCCCcEEEEEEeee--ChhHHHHHHHHHhc-CCeEEEEe
Q 023543 196 PDYVLGSDVIYSEGA--V--GDLLDTLLQLCGTQTTIFLAGELR--NDSVLEYFLEAAMK-DFVIGRVE 257 (281)
Q Consensus 196 fD~Iia~d~iy~~~~--~--~~ll~~l~~ll~~~g~~~l~~~~r--~~~~~~~fl~~~~~-~f~v~~i~ 257 (281)
||+|++....+.... + ..+++.+.++|+|||++++..... .....+.+.+.+++ ||....+.
T Consensus 170 fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 170 YDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp EEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred eeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEE
Confidence 999998443322111 1 688999999999999988865432 23345666777765 79755554
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=9.9e-11 Score=99.84 Aligned_cols=99 Identities=11% Similarity=0.112 Sum_probs=77.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cC-------CEEEEEec-hhHHHHHHHHHHHhh-----cCCCCCCceEEEEEecCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LG-------AQVILTDL-PDRLRLLKKNIENNL-----RHGDLRGSAVVTELTWGDD 186 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g-------~~V~~tD~-~~~l~~~~~N~~~n~-----~~~~~~~~i~~~~l~w~~~ 186 (281)
.++.+|||+|||+|..+..+++ .+ .+|+++|+ +++++.+++|+..++ .. ++.+...|..+.
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-----~v~~~~~d~~~~ 157 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG-----QLLIVEGDGRKG 157 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT-----SEEEEESCGGGC
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCC-----ceEEEECCcccC
Confidence 4678999999999999998887 44 48999999 889999999998876 33 677777665431
Q ss_pred CCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 187 PDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 187 ~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.. ...+||+|++...+.+ +.+.+.++|+|||.+++...
T Consensus 158 ~~---~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 158 YP---PNAPYNAIHVGAAAPD------TPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp CG---GGCSEEEEEECSCBSS------CCHHHHHTEEEEEEEEEEES
T ss_pred CC---cCCCccEEEECCchHH------HHHHHHHHhcCCCEEEEEEe
Confidence 11 1268999999888754 34788899999999988765
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-11 Score=115.44 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=78.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC--CCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD--PDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~--~~~~~~~~~fD 197 (281)
.++.+|||+|||+|.....++..|.+|+++|+ +.+++.++++ +.. . ....+... ....+.+.+||
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~~------~--~~~~~~~~~~~~l~~~~~~fD 173 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GIR------V--RTDFFEKATADDVRRTEGPAN 173 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TCC------E--ECSCCSHHHHHHHHHHHCCEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CCC------c--ceeeechhhHhhcccCCCCEE
Confidence 36789999999999999999999999999999 7889888765 222 0 11000000 00012347899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+|++..++++..+...+++.+.++|+|||.+++...
T Consensus 174 ~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 174 VIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp EEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999999999999999999999999999999998765
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-11 Score=119.56 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=74.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
-++.+|||+|||+|+++..+|++|++|+|+|. +.+++.|+..+..++.. ++.+...+..+... .....+||+|
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~-----~~~~~~~~~~~~~~-~~~~~~fD~v 138 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDF-----AAEFRVGRIEEVIA-ALEEGEFDLA 138 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTS-----EEEEEECCHHHHHH-HCCTTSCSEE
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCC-----ceEEEECCHHHHhh-hccCCCccEE
Confidence 35679999999999999999999999999999 88999999999887643 57777655432110 1234689999
Q ss_pred EEccccCCCCcHHHHH--HHHHHhhCCCcEEEEE
Q 023543 200 LGSDVIYSEGAVGDLL--DTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll--~~l~~ll~~~g~~~l~ 231 (281)
++..+++|..+...+. ..+.+.+++++..++.
T Consensus 139 ~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 139 IGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp EEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred EECcchhcCCCHHHHHHHHHHHHHhccccceeeE
Confidence 9999998854433221 2233445555554443
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.14 E-value=9.2e-10 Score=99.54 Aligned_cols=120 Identities=16% Similarity=0.084 Sum_probs=81.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhh-------cCCCCCCceEEEEEecCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNL-------RHGDLRGSAVVTELTWGDDPD 188 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~-------~~~~~~~~i~~~~l~w~~~~~ 188 (281)
..++.+|||+|||+|.+++.+++. | .+|+++|+ +.+++.+++|+...+ .. ....++.+...|..+..
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~-~~~~~v~~~~~d~~~~~- 180 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE-EWPDNVDFIHKDISGAT- 180 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSS-CCCCCEEEEESCTTCCC-
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccccc-ccCCceEEEECChHHcc-
Confidence 357889999999999999999986 5 68999999 889999999998643 21 01136777776654321
Q ss_pred CCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh
Q 023543 189 QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM 248 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~ 248 (281)
..+.+.+||+|++.-. ....+++.+.++|+|||.+++..... .....+++.+.
T Consensus 181 ~~~~~~~fD~V~~~~~-----~~~~~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l~ 233 (336)
T 2b25_A 181 EDIKSLTFDAVALDML-----NPHVTLPVFYPHLKHGGVCAVYVVNI--TQVIELLDGIR 233 (336)
T ss_dssp -------EEEEEECSS-----STTTTHHHHGGGEEEEEEEEEEESSH--HHHHHHHHHHH
T ss_pred cccCCCCeeEEEECCC-----CHHHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHHHHHH
Confidence 1234457999997432 22337888999999999988766532 33344555544
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=108.52 Aligned_cols=141 Identities=16% Similarity=0.232 Sum_probs=95.5
Q ss_pred ecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCC
Q 023543 99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRG 174 (281)
Q Consensus 99 ~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~ 174 (281)
--.++.+++..+. ..+|.+|||+|||+|..++.+|.. +.+|+++|+ +.+++.+++|++++++.
T Consensus 90 Qd~ss~l~~~~L~--------~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~----- 156 (456)
T 3m4x_A 90 QEPSAMIVGTAAA--------AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS----- 156 (456)
T ss_dssp CCTTTHHHHHHHC--------CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-----
T ss_pred ECHHHHHHHHHcC--------CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----
Confidence 3455666676664 246889999999999999888863 358999999 88999999999999875
Q ss_pred ceEEEEEecCCCCCCCcCCCCCcEEEEccc------cCC---------CC-------cHHHHHHHHHHhhCCCcEEEEEE
Q 023543 175 SAVVTELTWGDDPDQDLIQPLPDYVLGSDV------IYS---------EG-------AVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 175 ~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~------iy~---------~~-------~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++.+...|..+.. .....+||+|++... +-. .. ....+++.+.++|+|||+++++.
T Consensus 157 nv~v~~~Da~~l~--~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 157 NAIVTNHAPAELV--PHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 (456)
T ss_dssp SEEEECCCHHHHH--HHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceEEEeCCHHHhh--hhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5666654422110 012467999987322 111 11 12378889999999999877654
Q ss_pred e-e---eChhHHHHHHHHHhcCCeEEEE
Q 023543 233 E-L---RNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 233 ~-~---r~~~~~~~fl~~~~~~f~v~~i 256 (281)
- . .+...++.|++.. +|.+..+
T Consensus 235 Cs~~~eEne~vv~~~l~~~--~~~l~~~ 260 (456)
T 3m4x_A 235 CTFAPEENEEIISWLVENY--PVTIEEI 260 (456)
T ss_dssp SCCCGGGTHHHHHHHHHHS--SEEEECC
T ss_pred eecccccCHHHHHHHHHhC--CCEEEec
Confidence 2 2 3455666666543 3666555
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-10 Score=105.55 Aligned_cols=130 Identities=10% Similarity=0.005 Sum_probs=91.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHH--hhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIEN--NLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~--n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
++++|||||||+|.+++.+++. +.+|+++|+ +++++.+++|+.. ++.. ..++.+...|+.+... ....+|
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~---~~~v~~~~~D~~~~l~--~~~~~f 190 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE---DKRVNVFIEDASKFLE--NVTNTY 190 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG---STTEEEEESCHHHHHH--HCCSCE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC---CCcEEEEEccHHHHHh--hcCCCc
Confidence 5689999999999999999875 468999999 8899999999876 3332 2467777755432111 124679
Q ss_pred cEEEEccc--cCCCCc-H-HHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeEEEE
Q 023543 197 DYVLGSDV--IYSEGA-V-GDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 197 D~Iia~d~--iy~~~~-~-~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v~~i 256 (281)
|+|++.-. +..... . ..+++.+.++|+|||.+++.... .....+..+.+.+++.|.....
T Consensus 191 DvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~ 256 (321)
T 2pt6_A 191 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEY 256 (321)
T ss_dssp EEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred eEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEE
Confidence 99997432 111111 1 78999999999999998886543 2344566777778777764433
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-10 Score=101.62 Aligned_cols=128 Identities=13% Similarity=0.030 Sum_probs=87.0
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHH--hhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIEN--NLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~--n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+++|||||||+|.++..+++. ..+|+++|+ +.+++.+++|+.. ++.. ..++.+...|..+... ....+|
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~---~~~v~~~~~D~~~~l~--~~~~~f 164 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD---DPRAEIVIANGAEYVR--KFKNEF 164 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG---CTTEEEEESCHHHHGG--GCSSCE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC---CCceEEEECcHHHHHh--hCCCCc
Confidence 5689999999999999999876 358999999 8899999999865 3332 2467777755322111 124679
Q ss_pred cEEEEccccCC-CC-----cHHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeEEE
Q 023543 197 DYVLGSDVIYS-EG-----AVGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVIGR 255 (281)
Q Consensus 197 D~Iia~d~iy~-~~-----~~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v~~ 255 (281)
|+|++ |.... .. ....+++.+.++|+|||.+++.... ..........+.+.+.|....
T Consensus 165 D~Ii~-d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~ 230 (296)
T 1inl_A 165 DVIII-DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITR 230 (296)
T ss_dssp EEEEE-EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEE
T ss_pred eEEEE-cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceE
Confidence 99996 33211 11 2378899999999999998886433 233445556666666565433
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=102.27 Aligned_cols=129 Identities=11% Similarity=0.003 Sum_probs=90.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-C-CEEEEEec-hhHHHHHHHHHHHh--hcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRLRLLKKNIENN--LRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-g-~~V~~tD~-~~~l~~~~~N~~~n--~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
++++|||||||+|.++..+++. + .+|+++|+ +.+++.+++|+... +.. ..++.+...|..+... ....+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~---~~rv~v~~~D~~~~l~--~~~~~f 149 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLD---DPRVDVQVDDGFMHIA--KSENQY 149 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTT---STTEEEEESCSHHHHH--TCCSCE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccC---CCceEEEECcHHHHHh--hCCCCe
Confidence 5789999999999999998886 4 58999999 88999999998653 221 2467777644211111 124689
Q ss_pred cEEEEccccCCCC-----cHHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeEEEE
Q 023543 197 DYVLGSDVIYSEG-----AVGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 197 D~Iia~d~iy~~~-----~~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v~~i 256 (281)
|+|++ |..+... ....+++.+.++|+|||++++.... .....+....+.+++.|....+
T Consensus 150 D~Ii~-d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~ 215 (275)
T 1iy9_A 150 DVIMV-DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKL 215 (275)
T ss_dssp EEEEE-SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred eEEEE-CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEE
Confidence 99998 4443211 1368999999999999998876433 2344556667777777864444
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-10 Score=95.46 Aligned_cols=134 Identities=14% Similarity=0.120 Sum_probs=84.9
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l 181 (281)
++..|.+.+... ....++.+|||||||+|..+..+++.+.+|+++|+..+. . ..++.+...
T Consensus 9 a~~KL~ei~~~~----~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~----------~-----~~~v~~~~~ 69 (191)
T 3dou_A 9 AAFKLEFLLDRY----RVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME----------E-----IAGVRFIRC 69 (191)
T ss_dssp HHHHHHHHHHHH----CCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC----------C-----CTTCEEEEC
T ss_pred HHHHHHHHHHHc----CCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc----------c-----CCCeEEEEc
Confidence 345555555442 123468899999999999999999988899999994330 1 125677776
Q ss_pred ecCCCCCC-----CcC---CCCCcEEEEccccCCC-----------CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHH
Q 023543 182 TWGDDPDQ-----DLI---QPLPDYVLGSDVIYSE-----------GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEY 242 (281)
Q Consensus 182 ~w~~~~~~-----~~~---~~~fD~Iia~d~iy~~-----------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~ 242 (281)
|..+.... .+. ..+||+|++.-..... .....+++.+.++|+|||.+++... +.+. ...
T Consensus 70 D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~-~~~~-~~~ 147 (191)
T 3dou_A 70 DIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF-QGDM-TND 147 (191)
T ss_dssp CTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-CSTH-HHH
T ss_pred cccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc-CCCC-HHH
Confidence 54432100 011 1389999984322111 1235678888999999999876544 3332 345
Q ss_pred HHHHHhcCCeEEEE
Q 023543 243 FLEAAMKDFVIGRV 256 (281)
Q Consensus 243 fl~~~~~~f~v~~i 256 (281)
++..+...|.-..+
T Consensus 148 ~~~~l~~~F~~v~~ 161 (191)
T 3dou_A 148 FIAIWRKNFSSYKI 161 (191)
T ss_dssp HHHHHGGGEEEEEE
T ss_pred HHHHHHHhcCEEEE
Confidence 77777777864444
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.09 E-value=9.5e-11 Score=106.40 Aligned_cols=127 Identities=12% Similarity=0.002 Sum_probs=87.9
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHh--hcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENN--LRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n--~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
++++|||||||+|.+++.+++. +.+|+++|+ +.+++.+++|+... +.. ..++.+...|+.+... ...+.+|
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~---~~rv~~~~~D~~~~l~-~~~~~~f 195 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE---DPRVNLVIGDGVAFLK-NAAEGSY 195 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG---STTEEEEESCHHHHHH-TSCTTCE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC---CCcEEEEECCHHHHHH-hccCCCc
Confidence 5689999999999999999875 468999999 88999999998763 332 1467877766432111 1124689
Q ss_pred cEEEEccc--cCCCCc--HHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCe
Q 023543 197 DYVLGSDV--IYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 197 D~Iia~d~--iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~ 252 (281)
|+|++.-. ...... ...+++.+.++|+|||.+++.... .....+...++.+++.|.
T Consensus 196 DlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~ 257 (334)
T 1xj5_A 196 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFK 257 (334)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred cEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCc
Confidence 99997322 221121 478999999999999998885322 233334455566666665
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-10 Score=102.25 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=77.2
Q ss_pred CCCeEEEECCCcCH----HHHHHHHc-C-----CEEEEEec-hhHHHHHHHHHHHh----h-------------c---C-
Q 023543 122 HGKKIVELGSGCGL----VGCIAALL-G-----AQVILTDL-PDRLRLLKKNIENN----L-------------R---H- 169 (281)
Q Consensus 122 ~~~~VLELGcGtG~----~~i~~a~~-g-----~~V~~tD~-~~~l~~~~~N~~~n----~-------------~---~- 169 (281)
++.+|+|+|||||. +++.++.. + .+|+|||+ ++||+.|++|+... + . .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 34699999999997 66666653 3 58999999 88999999885210 0 0 0
Q ss_pred ---C--CCCCceEEEEEecCCCCCCCcC-CCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 170 ---G--DLRGSAVVTELTWGDDPDQDLI-QPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 170 ---~--~~~~~i~~~~l~w~~~~~~~~~-~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+ ....++.+...++.+. .++ ..+||+|+|..++.+ +.....+++.+.+.|+|||.+++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~---~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEK---QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCS---SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEecccCCC---CCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 0 0013578888776542 122 467999999888644 3445899999999999999988753
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.8e-10 Score=99.25 Aligned_cols=131 Identities=12% Similarity=-0.042 Sum_probs=87.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHh--hc----CCCCCCceEEEEEecCCCCCCCcC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENN--LR----HGDLRGSAVVTELTWGDDPDQDLI 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n--~~----~~~~~~~i~~~~l~w~~~~~~~~~ 192 (281)
.++++|||||||+|.++..+++.+ .+|+++|+ +.+++.+++|+ .. +. ......++.+...|..+... .
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~--~- 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIK--N- 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHH--H-
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhc--c-
Confidence 357899999999999999988874 48999999 88999999998 33 21 00012467777644211110 1
Q ss_pred CCCCcEEEEccccCCC---Cc--HHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeEEEE
Q 023543 193 QPLPDYVLGSDVIYSE---GA--VGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~---~~--~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v~~i 256 (281)
..+||+|++ |..+.. .. ...+++.+.++|+|||++++.... ..........+.+...|.....
T Consensus 150 ~~~fD~Ii~-d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~ 219 (281)
T 1mjf_A 150 NRGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYY 219 (281)
T ss_dssp CCCEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEE
T ss_pred cCCeeEEEE-CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEE
Confidence 467999997 333221 11 377899999999999998876443 2344455566666666754443
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=107.00 Aligned_cols=101 Identities=21% Similarity=0.186 Sum_probs=77.4
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-C-CEEEEEec-hhHHHHHHHHHHHh---------------hcCCCCCCceEEEEEec
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRLRLLKKNIENN---------------LRHGDLRGSAVVTELTW 183 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-g-~~V~~tD~-~~~l~~~~~N~~~n---------------~~~~~~~~~i~~~~l~w 183 (281)
++.+|||+|||+|..|+.+++. + .+|+++|+ +++++.+++|++.| ++. ++.+...|.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-----~i~v~~~Da 121 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-----TIVINHDDA 121 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-----EEEEEESCH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-----ceEEEcCcH
Confidence 6889999999999999999985 4 58999999 88999999999999 543 366666443
Q ss_pred CCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 184 GDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 184 ~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.+.... ...+||+|+ .|..+. ...++..+.++++++|.+++++.
T Consensus 122 ~~~~~~--~~~~fD~I~-lDP~~~---~~~~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 122 NRLMAE--RHRYFHFID-LDPFGS---PMEFLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp HHHHHH--STTCEEEEE-ECCSSC---CHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHh--ccCCCCEEE-eCCCCC---HHHHHHHHHHhcCCCCEEEEEee
Confidence 221110 135799999 566432 36788888999999999888763
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-09 Score=101.93 Aligned_cols=162 Identities=19% Similarity=0.099 Sum_probs=101.9
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCce
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
..++..++..+. ..++.+|||+|||+|..++.++..+ .+|+++|+ +.+++.+++|+..++.. +
T Consensus 232 d~~s~~~~~~l~--------~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~------~ 297 (429)
T 1sqg_A 232 DASAQGCMTWLA--------PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK------A 297 (429)
T ss_dssp CHHHHTHHHHHC--------CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC------C
T ss_pred CHHHHHHHHHcC--------CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC------e
Confidence 445555566553 2468899999999999999888755 58999999 88999999999998753 4
Q ss_pred EEEEEecCCCCCCCcCCCCCcEEEEc------cccCCCCc----------------HHHHHHHHHHhhCCCcEEEEEEee
Q 023543 177 VVTELTWGDDPDQDLIQPLPDYVLGS------DVIYSEGA----------------VGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~~~~fD~Iia~------d~iy~~~~----------------~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
.+...|..+.. ..+...+||+|++. .++..... ...+++.+.++|+|||.++++.-.
T Consensus 298 ~~~~~D~~~~~-~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 298 TVKQGDGRYPS-QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp EEEECCTTCTH-HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred EEEeCchhhch-hhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 55554433211 11234679999962 22222221 157888899999999998876522
Q ss_pred ----eChhHHHHHHHHHhcCCeEEEE------ecCCCCCCCCCCcEEEEEEEe
Q 023543 235 ----RNDSVLEYFLEAAMKDFVIGRV------EQTQWHPDYCSPRVVVYILVK 277 (281)
Q Consensus 235 ----r~~~~~~~fl~~~~~~f~v~~i------~~~~~~~~~~~~~~~i~~~~~ 277 (281)
.+...+..|+... .+|.+..- ....+.......+|.+-.++|
T Consensus 377 ~~~~ene~~v~~~l~~~-~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k 428 (429)
T 1sqg_A 377 VLPEENSLQIKAFLQRT-ADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK 428 (429)
T ss_dssp CCGGGTHHHHHHHHHHC-TTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC
T ss_pred CChhhHHHHHHHHHHhC-CCCEEeCCCCCCCCeEEECCCCCCCCceEEEEEEE
Confidence 2344555566432 35654320 001122222345777666655
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=9e-10 Score=95.86 Aligned_cols=124 Identities=11% Similarity=0.087 Sum_probs=85.0
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
...+|||||||+|.+++.++.. .++|+++|+ +.+++.+++|+..|+.. ..+...| ... ..+..+||+
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~------~~~~v~D---~~~-~~p~~~~Dv 201 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP------HRTNVAD---LLE-DRLDEPADV 201 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC------EEEEECC---TTT-SCCCSCCSE
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC------ceEEEee---ecc-cCCCCCcch
Confidence 4679999999999999998875 458999999 88999999999999865 4444433 222 234578999
Q ss_pred EEEccccCCCCcH--HHHHHHHHHhhCCCcEEEEEEee-----eChh---HHHHHH-HHHh-cCCeEEEEe
Q 023543 199 VLGSDVIYSEGAV--GDLLDTLLQLCGTQTTIFLAGEL-----RNDS---VLEYFL-EAAM-KDFVIGRVE 257 (281)
Q Consensus 199 Iia~d~iy~~~~~--~~ll~~l~~ll~~~g~~~l~~~~-----r~~~---~~~~fl-~~~~-~~f~v~~i~ 257 (281)
+++..++..-+.. ...+ .+.+.|+++|++ ++.+. |+.. ..+..+ ..+. .++.+.++.
T Consensus 202 aL~lkti~~Le~q~kg~g~-~ll~aL~~~~vv-VSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 202 TLLLKTLPCLETQQRGSGW-EVIDIVNSPNIV-VTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLE 270 (281)
T ss_dssp EEETTCHHHHHHHSTTHHH-HHHHHSSCSEEE-EEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEE-EeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeee
Confidence 9999998763322 2344 677778888875 56555 3322 233333 3344 478777775
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-09 Score=101.51 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=89.1
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCce
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
.++.+++..|.-. ..+|.+|||+|||+|..++.+|.. +.+|+++|+ +.+++.+++|+++++.. ++
T Consensus 102 ~~s~l~~~~L~~~------~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-----nv 170 (479)
T 2frx_A 102 ASSMLPVAALFAD------GNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-----NV 170 (479)
T ss_dssp HHHHHHHHHHTTT------TCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-----SE
T ss_pred HHHHHHHHHhCcc------cCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----cE
Confidence 4455555655311 126889999999999999988874 368999999 88999999999999865 56
Q ss_pred EEEEEecCCCCCCCcCCCCCcEEEEcc------ccCC-CC---------------cHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 177 VVTELTWGDDPDQDLIQPLPDYVLGSD------VIYS-EG---------------AVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~~~~fD~Iia~d------~iy~-~~---------------~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
.+...|..+.. .....+||+|++.- ++.. ++ ....+++.+.++|+|||+++++.-.
T Consensus 171 ~~~~~D~~~~~--~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 171 ALTHFDGRVFG--AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp EEECCCSTTHH--HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEeCCHHHhh--hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 66664432110 01245799999721 1111 11 1357888999999999998775432
Q ss_pred ----eChhHHHHHHHH
Q 023543 235 ----RNDSVLEYFLEA 246 (281)
Q Consensus 235 ----r~~~~~~~fl~~ 246 (281)
.+...++.|++.
T Consensus 249 ~~~~Ene~vv~~~l~~ 264 (479)
T 2frx_A 249 LNQEENEAVCLWLKET 264 (479)
T ss_dssp CSSTTTHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHH
Confidence 234455666654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-10 Score=101.98 Aligned_cols=132 Identities=11% Similarity=-0.002 Sum_probs=90.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++++|||||||+|..+..+++. +.+|+++|+ +.+++.+++++..++... ...++.+...|..+... ....+||+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~-~~~~v~~~~~D~~~~l~--~~~~~fD~ 154 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY-EDKRVNVFIEDASKFLE--NVTNTYDV 154 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG-GSTTEEEEESCHHHHHH--HCCSCEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhcccc-CCCcEEEEECChHHHHH--hCCCCceE
Confidence 5689999999999999998875 358999999 889999999876542110 02467777655322111 12468999
Q ss_pred EEEc--cccCCCCcH--HHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeEEEE
Q 023543 199 VLGS--DVIYSEGAV--GDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 199 Iia~--d~iy~~~~~--~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v~~i 256 (281)
|++. +.......+ ..+++.+.++|+|||.+++.... .....+..+.+.+++.|....+
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~ 218 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEY 218 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEE
Confidence 9983 222112222 78999999999999998877543 2344556677777777864433
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=102.34 Aligned_cols=129 Identities=11% Similarity=-0.018 Sum_probs=85.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHH--hhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIEN--NLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~--n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.++++|||||||+|.+++.+++.. .+|+++|+ +.+++.+++|+.. ++.. ..++.+...|..+... ..+.+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~---~~rv~v~~~Da~~~l~--~~~~~ 168 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS---SSKLTLHVGDGFEFMK--QNQDA 168 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG---CTTEEEEESCHHHHHH--TCSSC
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC---CCcEEEEECcHHHHHh--hCCCC
Confidence 356899999999999999998864 58999999 8899999999876 3332 1467777644321111 12467
Q ss_pred CcEEEEccccCCC-----CcHHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeEEE
Q 023543 196 PDYVLGSDVIYSE-----GAVGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVIGR 255 (281)
Q Consensus 196 fD~Iia~d~iy~~-----~~~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v~~ 255 (281)
||+|++. ..... .....+++.+.++|+|||++++.... ..........+.+.+-|....
T Consensus 169 fD~Ii~d-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~ 234 (304)
T 2o07_A 169 FDVIITD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVA 234 (304)
T ss_dssp EEEEEEE-CC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEE
T ss_pred ceEEEEC-CCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCce
Confidence 9999973 32211 12357899999999999998876533 233334444455555565333
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.1e-10 Score=102.07 Aligned_cols=125 Identities=10% Similarity=0.000 Sum_probs=86.3
Q ss_pred CeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
.+|||||||+|.++..+++ .+.+|+++|+ +.+++.+++++..+. ..++.+...|..+... ...+.+||+|+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-----~~rv~v~~~Da~~~l~-~~~~~~fDvIi 164 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-----APRVKIRVDDARMVAE-SFTPASRDVII 164 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-----TTTEEEEESCHHHHHH-TCCTTCEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-----CCceEEEECcHHHHHh-hccCCCCCEEE
Confidence 3999999999999998887 4679999999 889999999876532 2467777654321110 12346899999
Q ss_pred Ecc--ccCCCCc--HHHHHHHHHHhhCCCcEEEEEEeeeCh-hHHHHHHHHHhcCCeEE
Q 023543 201 GSD--VIYSEGA--VGDLLDTLLQLCGTQTTIFLAGELRND-SVLEYFLEAAMKDFVIG 254 (281)
Q Consensus 201 a~d--~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~r~~-~~~~~fl~~~~~~f~v~ 254 (281)
+.- ..+.+.. ...+++.++++|+|+|++++....... ..+...+..+.+.|.-.
T Consensus 165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v 223 (317)
T 3gjy_A 165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHV 223 (317)
T ss_dssp ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEE
T ss_pred ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCce
Confidence 732 1122222 278999999999999998776553322 33456677777777533
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.7e-10 Score=98.48 Aligned_cols=96 Identities=9% Similarity=-0.008 Sum_probs=73.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|..+..+++. +.+|+++|+ +.+++.++++. .++.+...++.+ ..+.+.+||
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~---~~~~~~~fD 150 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSHR---LPFSDTSMD 150 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTS---CSBCTTCEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcchhh---CCCCCCcee
Confidence 36789999999999999988885 789999999 88899888763 134555555432 234457899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
+|++..+. .+++.+.++|+|||.+++......
T Consensus 151 ~v~~~~~~-------~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 151 AIIRIYAP-------CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp EEEEESCC-------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEeCCh-------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 99987652 357889999999999988876543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=90.69 Aligned_cols=115 Identities=15% Similarity=0.079 Sum_probs=72.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-C----------CEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEE-EEecCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-G----------AQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVT-ELTWGDDPD 188 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g----------~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~-~l~w~~~~~ 188 (281)
.++.+|||||||+|.+++.+++. + .+|+++|++.+. .. .++.+. ..|+.+...
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~~-----~~~~~~~~~d~~~~~~ 85 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------PL-----EGATFLCPADVTDPRT 85 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------CC-----TTCEEECSCCTTSHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------cC-----CCCeEEEeccCCCHHH
Confidence 46889999999999999999875 4 689999994421 01 234444 333221100
Q ss_pred -----CCcCCCCCcEEEEccccCCCC----cH-------HHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCe
Q 023543 189 -----QDLIQPLPDYVLGSDVIYSEG----AV-------GDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 189 -----~~~~~~~fD~Iia~d~iy~~~----~~-------~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~ 252 (281)
..+.+.+||+|++....+... +. ..+++.+.++|+|||.+++....... ...+...+...|.
T Consensus 86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~--~~~~~~~l~~~f~ 163 (196)
T 2nyu_A 86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ--SRRLQRRLTEEFQ 163 (196)
T ss_dssp HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG--GHHHHHHHHHHEE
T ss_pred HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc--HHHHHHHHHHHhc
Confidence 002235799999865433211 11 47889999999999998887543322 2345555555554
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.8e-10 Score=104.41 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=92.8
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCc
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGS 175 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~ 175 (281)
-.++.+++..+. ..+|.+|||+|||+|..++.+|.. ..+|+++|+ +.+++.+++|++++++.
T Consensus 87 d~ss~l~a~~L~--------~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~------ 152 (464)
T 3m6w_A 87 EPSAQAVGVLLD--------PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP------ 152 (464)
T ss_dssp CTTTHHHHHHHC--------CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHhcC--------cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe------
Confidence 445666666653 246889999999999999988864 258999999 88999999999998753
Q ss_pred eEEEEEecCCCCCCCcCCCCCcEEEEc------cccCC-C--------Cc-------HHHHHHHHHHhhCCCcEEEEEEe
Q 023543 176 AVVTELTWGDDPDQDLIQPLPDYVLGS------DVIYS-E--------GA-------VGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 176 i~~~~l~w~~~~~~~~~~~~fD~Iia~------d~iy~-~--------~~-------~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+.+...|..+.. .....+||+|++. .++.. + .. ...+++.+.++|+|||+++++.-
T Consensus 153 v~~~~~Da~~l~--~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 153 LAVTQAPPRALA--EAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp CEEECSCHHHHH--HHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred EEEEECCHHHhh--hhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 444443321110 0124689999851 11111 1 11 27788899999999999876532
Q ss_pred -e---eChhHHHHHHHHHhcCCeEEEE
Q 023543 234 -L---RNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 234 -~---r~~~~~~~fl~~~~~~f~v~~i 256 (281)
. .+...++.|++.. .+|.+..+
T Consensus 231 s~~~eEne~vv~~~l~~~-~~~~l~~~ 256 (464)
T 3m6w_A 231 TFAPEENEGVVAHFLKAH-PEFRLEDA 256 (464)
T ss_dssp CCCGGGTHHHHHHHHHHC-TTEEEECC
T ss_pred cCchhcCHHHHHHHHHHC-CCcEEEec
Confidence 2 3445566666432 35766655
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.3e-10 Score=99.27 Aligned_cols=129 Identities=10% Similarity=0.018 Sum_probs=88.4
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHH-hh--cCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIEN-NL--RHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~-n~--~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
++++|||||||+|..+..+++. +.+|+++|+ +.+++.+++|+.. |. .. ..++.+...|..+... ....+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~---~~~v~~~~~D~~~~l~--~~~~~ 151 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFD---DPRAVLVIDDARAYLE--RTEER 151 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG---CTTEEEEESCHHHHHH--HCCCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccccc---CCceEEEEchHHHHHH--hcCCC
Confidence 5689999999999999998875 468999999 8899999999864 22 21 1467777655322111 12467
Q ss_pred CcEEEEccccCC---C--Cc--HHHHHHHHHHhhCCCcEEEEEEeee---ChhHHHHHHHHHhcCCeEEE
Q 023543 196 PDYVLGSDVIYS---E--GA--VGDLLDTLLQLCGTQTTIFLAGELR---NDSVLEYFLEAAMKDFVIGR 255 (281)
Q Consensus 196 fD~Iia~d~iy~---~--~~--~~~ll~~l~~ll~~~g~~~l~~~~r---~~~~~~~fl~~~~~~f~v~~ 255 (281)
||+|++.-.... . .. ...+++.+.++|+|||++++..... +........+.+++.|....
T Consensus 152 fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~ 221 (314)
T 1uir_A 152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVR 221 (314)
T ss_dssp EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEE
T ss_pred ccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceE
Confidence 999998533322 0 11 4789999999999999988765432 23445566667777775433
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=99.61 Aligned_cols=96 Identities=16% Similarity=0.090 Sum_probs=74.7
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.+.+|||||||+|..++.+++. +.+++++|++.+++.++++ .++.+...|..+ .++. .|+|
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-----------~~v~~~~~d~~~----~~p~--~D~v 265 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF-----------SGVEHLGGDMFD----GVPK--GDAI 265 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-----------TTEEEEECCTTT----CCCC--CSEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhc-----------CCCEEEecCCCC----CCCC--CCEE
Confidence 4679999999999999988873 5689999998887665531 367788766543 2222 2999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++..++|+..+ ...+++.+++.|+|||.+++....
T Consensus 266 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 266 FIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp EEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 99999987554 458999999999999999887644
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-10 Score=101.04 Aligned_cols=140 Identities=14% Similarity=-0.041 Sum_probs=82.3
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCC-CCCCceEEE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHG-DLRGSAVVT 179 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~-~~~~~i~~~ 179 (281)
.++..|.+.+.. ....++++|||||||+|..+..+++. .+|+++|+..++..++++ .... ....++.+.
T Consensus 66 R~a~KL~~i~~~-----~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~m~~~a~~~----~~~~~~~~~~v~~~ 135 (276)
T 2wa2_A 66 RGTAKLAWIDER-----GGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYTLGTSGHEK----PRLVETFGWNLITF 135 (276)
T ss_dssp HHHHHHHHHHHT-----TSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEECCCCTTSCC----CCCCCCTTGGGEEE
T ss_pred hHHHHHHHHHHc-----CCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECchhhhhhhhc----hhhhhhcCCCeEEE
Confidence 345555555443 12346889999999999999999988 789999994453222211 1000 000145555
Q ss_pred --EEecCCCCCCCcCCCCCcEEEEccccCCCCc----HH---HHHHHHHHhhCCCc--EEEEEEeeeChhHHHHHHHHHh
Q 023543 180 --ELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA----VG---DLLDTLLQLCGTQT--TIFLAGELRNDSVLEYFLEAAM 248 (281)
Q Consensus 180 --~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~----~~---~ll~~l~~ll~~~g--~~~l~~~~r~~~~~~~fl~~~~ 248 (281)
..|..+ +++.+||+|++.-. +.... .. .+++.+.++|+||| .+++............++..+.
T Consensus 136 ~~~~D~~~-----l~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~~~~~~l~~l~ 209 (276)
T 2wa2_A 136 KSKVDVTK-----MEPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSCDVLEALMKMQ 209 (276)
T ss_dssp ECSCCGGG-----CCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSHHHHHHHHHHH
T ss_pred eccCcHhh-----CCCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCchhHHHHHHHHH
Confidence 333221 33568999998654 33211 11 36888999999999 8776433322222234666666
Q ss_pred cCCeEEEE
Q 023543 249 KDFVIGRV 256 (281)
Q Consensus 249 ~~f~v~~i 256 (281)
..|....+
T Consensus 210 ~~f~~v~v 217 (276)
T 2wa2_A 210 ARFGGGLI 217 (276)
T ss_dssp HHHCCEEE
T ss_pred HHcCCEEE
Confidence 66654444
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.6e-10 Score=102.64 Aligned_cols=127 Identities=10% Similarity=-0.041 Sum_probs=83.0
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHh--hcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENN--LRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n--~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+++|||||||+|.++..+++. +.+|+++|+ +.+++.+++|+... +.. ..++.+...|..+... ....+|
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~---~~rv~~~~~D~~~~l~--~~~~~f 182 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS---HPKLDLFCGDGFEFLK--NHKNEF 182 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG---CTTEEEECSCHHHHHH--HCTTCE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccC---CCCEEEEEChHHHHHH--hcCCCc
Confidence 5689999999999999999875 468999999 88999999998653 321 2467776654322111 124679
Q ss_pred cEEEEccccCC---CCc-H-HHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeEE
Q 023543 197 DYVLGSDVIYS---EGA-V-GDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVIG 254 (281)
Q Consensus 197 D~Iia~d~iy~---~~~-~-~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v~ 254 (281)
|+|++. .... ... . ..+++.+.++|+|||++++.... ..........+.+++-|...
T Consensus 183 D~Ii~d-~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v 246 (314)
T 2b2c_A 183 DVIITD-SSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAV 246 (314)
T ss_dssp EEEEEC-CC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEE
T ss_pred eEEEEc-CCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcc
Confidence 999973 3211 111 2 78999999999999998876422 23333444555555556533
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.8e-10 Score=95.31 Aligned_cols=101 Identities=11% Similarity=-0.025 Sum_probs=72.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
....+|||||||+|.+++.+. .+.+|+++|+ +.+++.+++|+..++.. ..+...| ..... ...+||+|
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~------~~~~v~D---~~~~~-~~~~~Dvv 172 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWD------FTFALQD---VLCAP-PAEAGDLA 172 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCE------EEEEECC---TTTSC-CCCBCSEE
T ss_pred CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCC------ceEEEee---cccCC-CCCCcchH
Confidence 357799999999999999888 6678999999 88999999999998743 4455433 22222 34589999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++..+++.-+. -..+. .+.+.|++++++ ++.+.
T Consensus 173 Lllk~lh~LE~q~~~~~~-~ll~aL~~~~vv-VsfPt 207 (253)
T 3frh_A 173 LIFKLLPLLEREQAGSAM-ALLQSLNTPRMA-VSFPT 207 (253)
T ss_dssp EEESCHHHHHHHSTTHHH-HHHHHCBCSEEE-EEEEC
T ss_pred HHHHHHHHhhhhchhhHH-HHHHHhcCCCEE-EEcCh
Confidence 99988876322 12233 455577777654 56653
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-10 Score=105.58 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=77.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCc-eEEEEEecCCCCCCCcCCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGS-AVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~-i~~~~l~w~~~~~~~~~~~~f 196 (281)
+|.+|||++||+|..|+.++.. |+ +|+++|+ +.+++.+++|++.|++. ++ +.+...|..+..... ...+|
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~----~~~v~v~~~Da~~~l~~~-~~~~f 126 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP----EDRYEIHGMEANFFLRKE-WGFGF 126 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC----GGGEEEECSCHHHHHHSC-CSSCE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CceEEEEeCCHHHHHHHh-hCCCC
Confidence 5789999999999999999884 54 6999999 88999999999999875 33 776664432111101 13579
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+. |. |. ....++..+.++++++|.+++++.
T Consensus 127 D~V~l-DP-~g--~~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 127 DYVDL-DP-FG--TPVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp EEEEE-CC-SS--CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cEEEE-CC-Cc--CHHHHHHHHHHHhCCCCEEEEEec
Confidence 99885 55 32 235688999999999999988874
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-09 Score=96.30 Aligned_cols=102 Identities=9% Similarity=-0.052 Sum_probs=75.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC-------CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG-------AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ 193 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g-------~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~ 193 (281)
++.+|||+|||+|.+.+.+++.. .+|+|+|+ +.+++.++.|+..++.. +.+...|.. .. ...
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~------~~i~~~D~l---~~-~~~ 199 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK------MTLLHQDGL---AN-LLV 199 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC------CEEEESCTT---SC-CCC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCC------ceEEECCCC---Cc-ccc
Confidence 56799999999999988887643 57999999 88999999999988653 444553332 21 234
Q ss_pred CCCcEEEEccccCCC-C-----------------cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 194 PLPDYVLGSDVIYSE-G-----------------AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~-~-----------------~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.+||+|+++.++... . ....+++.+.++|+|+|++++..+
T Consensus 200 ~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 200 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 689999998774221 1 113688999999999999887764
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-10 Score=98.73 Aligned_cols=136 Identities=13% Similarity=-0.025 Sum_probs=79.7
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCC-CCCceEEE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGD-LRGSAVVT 179 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~-~~~~i~~~ 179 (281)
.++..|.+.+... ...++++|||||||+|..+..+++. .+|+++|+..++..++++ ..... ...++.+.
T Consensus 58 R~a~KL~~i~~~~-----~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~m~~~a~~~----~~~~~~~~~~v~~~ 127 (265)
T 2oxt_A 58 RGTAKLAWMEERG-----YVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYTLGVGGHEV----PRITESYGWNIVKF 127 (265)
T ss_dssp THHHHHHHHHHHT-----SCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEECCCCSSCCC----CCCCCBTTGGGEEE
T ss_pred hHHHHHHHHHHcC-----CCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECchhhhhhhhh----hhhhhccCCCeEEE
Confidence 3455565555431 2346889999999999999999988 789999994453222211 00000 00145554
Q ss_pred --EEecCCCCCCCcCCCCCcEEEEccccCCCCcH----H---HHHHHHHHhhCCCc--EEEEEEeeeChhHHHHHHHHHh
Q 023543 180 --ELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAV----G---DLLDTLLQLCGTQT--TIFLAGELRNDSVLEYFLEAAM 248 (281)
Q Consensus 180 --~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~----~---~ll~~l~~ll~~~g--~~~l~~~~r~~~~~~~fl~~~~ 248 (281)
..|.. + +.+.+||+|++.-. +..... . .+++.+.++|+||| .+++............++..+.
T Consensus 128 ~~~~D~~---~--l~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~ 201 (265)
T 2oxt_A 128 KSRVDIH---T--LPVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQ 201 (265)
T ss_dssp ECSCCTT---T--SCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHH
T ss_pred ecccCHh---H--CCCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHH
Confidence 33322 2 33578999998544 322111 1 27788889999999 8777443322222224666666
Q ss_pred cCCe
Q 023543 249 KDFV 252 (281)
Q Consensus 249 ~~f~ 252 (281)
+.|.
T Consensus 202 ~~f~ 205 (265)
T 2oxt_A 202 RKWG 205 (265)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 5554
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=98.26 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=76.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
++.+|||+|||+|..+..+++. +.+++++|++.+++.+++ . .++.+...|..+ .+ +.||+|
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~-----~~v~~~~~d~~~----~~--p~~D~v 250 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG------S-----NNLTYVGGDMFT----SI--PNADAV 250 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------B-----TTEEEEECCTTT----CC--CCCSEE
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc------C-----CCcEEEeccccC----CC--CCccEE
Confidence 5679999999999999988874 568999999777776653 1 247777755432 12 349999
Q ss_pred EEccccCCCCcHH--HHHHHHHHhhCC---CcEEEEEEeee
Q 023543 200 LGSDVIYSEGAVG--DLLDTLLQLCGT---QTTIFLAGELR 235 (281)
Q Consensus 200 ia~d~iy~~~~~~--~ll~~l~~ll~~---~g~~~l~~~~r 235 (281)
++..++++..+.+ .+++.+.+.|+| ||.+++.....
T Consensus 251 ~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred EeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence 9999999877766 999999999999 99998886543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=95.01 Aligned_cols=123 Identities=7% Similarity=-0.063 Sum_probs=83.7
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHH--hhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIEN--NLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~--n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+++|||||||+|.++..+++.+.+|+++|+ +.+++.+++++.. ++.. ..++.+..-| .... . .+||+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~---~~rv~~~~~D---~~~~--~-~~fD~ 142 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKN---NKNFTHAKQL---LDLD--I-KKYDL 142 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHT---CTTEEEESSG---GGSC--C-CCEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccC---CCeEEEEech---HHHH--H-hhCCE
Confidence 5689999999999988877766678999999 8899999987643 2222 1356655433 2221 1 67999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee--ChhHHHHHHHHHhcCCeEEEEec
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR--NDSVLEYFLEAAMKDFVIGRVEQ 258 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r--~~~~~~~fl~~~~~~f~v~~i~~ 258 (281)
|++. . .+...+++.+.++|+|||++++..... ....+......+.+.|.......
T Consensus 143 Ii~d-~----~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~ 199 (262)
T 2cmg_A 143 IFCL-Q----EPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFV 199 (262)
T ss_dssp EEES-S----CCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEEC-C----CChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEE
Confidence 9974 2 122348999999999999988754332 22344555666666787555443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.5e-10 Score=97.86 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=59.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +.+++.+++|+..++.. .++.+...|..+ . ..++||+|
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~D~~~---~--~~~~fD~v 97 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVA----SKLQVLVGDVLK---T--DLPFFDTC 97 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTG----GGEEEEESCTTT---S--CCCCCSEE
T ss_pred CCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEEcceec---c--cchhhcEE
Confidence 46789999999999999999999999999999 88999999998766542 367777755432 1 12479999
Q ss_pred EEcccc
Q 023543 200 LGSDVI 205 (281)
Q Consensus 200 ia~d~i 205 (281)
+++-+.
T Consensus 98 v~nlpy 103 (285)
T 1zq9_A 98 VANLPY 103 (285)
T ss_dssp EEECCG
T ss_pred EEecCc
Confidence 985443
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-09 Score=94.38 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=57.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +.+++.+++|+..++.. ++.+...|..+. ..++||+|
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~-----~v~~~~~D~~~~-----~~~~~D~V 110 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYN-----NLEVYEGDAIKT-----VFPKFDVC 110 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCC-----CEEC----CCSS-----CCCCCSEE
T ss_pred CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEECchhhC-----CcccCCEE
Confidence 46789999999999999999998999999999 88999999999877643 576666554321 22579999
Q ss_pred EEccccCC
Q 023543 200 LGSDVIYS 207 (281)
Q Consensus 200 ia~d~iy~ 207 (281)
+++ ..|+
T Consensus 111 v~n-~py~ 117 (299)
T 2h1r_A 111 TAN-IPYK 117 (299)
T ss_dssp EEE-CCGG
T ss_pred EEc-CCcc
Confidence 875 4454
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.6e-09 Score=95.77 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=75.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.+.+|||+|||+|..+..+++. +.+++++|++.+++.+++ . .++.+...|..+ .+ ++||+|
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~-----~~v~~~~~d~~~----~~--~~~D~v 255 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------N-----ENLNFVGGDMFK----SI--PSADAV 255 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------C-----SSEEEEECCTTT----CC--CCCSEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------C-----CCcEEEeCccCC----CC--CCceEE
Confidence 5679999999999999988875 457999999877765542 1 247777765433 12 359999
Q ss_pred EEccccCCCCcHH--HHHHHHHHhhCC---CcEEEEEEee
Q 023543 200 LGSDVIYSEGAVG--DLLDTLLQLCGT---QTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~~~--~ll~~l~~ll~~---~g~~~l~~~~ 234 (281)
+++.++++..+.. .+++.+.+.|+| ||.+++....
T Consensus 256 ~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 256 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDIS 295 (358)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred EEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence 9999999877755 999999999999 9998887654
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.8e-09 Score=95.90 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=78.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC----------------------------------------CEEEEEec-hhHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG----------------------------------------AQVILTDL-PDRLRLL 159 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g----------------------------------------~~V~~tD~-~~~l~~~ 159 (281)
.++.+|||+|||+|.+.+.+|..+ .+|+++|+ +.+++.+
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 467899999999999999988754 36999999 8999999
Q ss_pred HHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCC-----CcHHHHHHHHHHhhCC--CcEEEEEE
Q 023543 160 KKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE-----GAVGDLLDTLLQLCGT--QTTIFLAG 232 (281)
Q Consensus 160 ~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~-----~~~~~ll~~l~~ll~~--~g~~~l~~ 232 (281)
++|+..+++. ..+.+...|..+.. ...+||+|+++-. |.. ..+..+.+.+.+.+++ ++.+++..
T Consensus 274 r~Na~~~gl~----~~i~~~~~D~~~l~----~~~~~D~Iv~NPP-yg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 274 RENAEIAGVD----EYIEFNVGDATQFK----SEDEFGFIITNPP-YGERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT 344 (385)
T ss_dssp HHHHHHHTCG----GGEEEEECCGGGCC----CSCBSCEEEECCC-CCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred HHHHHHcCCC----CceEEEECChhhcC----cCCCCcEEEECCC-CcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 9999999875 46888886654422 2357999887655 442 3456677777777766 77766654
Q ss_pred e
Q 023543 233 E 233 (281)
Q Consensus 233 ~ 233 (281)
.
T Consensus 345 ~ 345 (385)
T 3ldu_A 345 S 345 (385)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.7e-09 Score=95.79 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=77.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC----------------------------------------EEEEEec-hhHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA----------------------------------------QVILTDL-PDRLRLL 159 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~----------------------------------------~V~~tD~-~~~l~~~ 159 (281)
.++.+|||.|||+|.+.+.+|..+. +|+++|+ +.+++.+
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 4678999999999999998887543 4999999 8899999
Q ss_pred HHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCC-----CcHHHHHHHHHHhhCC--CcEEEEEE
Q 023543 160 KKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE-----GAVGDLLDTLLQLCGT--QTTIFLAG 232 (281)
Q Consensus 160 ~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~-----~~~~~ll~~l~~ll~~--~g~~~l~~ 232 (281)
+.|+..+++. +++.+...|+.+.. ...+||+|+++-. |.. ..+..+.+.+.+.+++ |+.+++..
T Consensus 280 r~Na~~~gl~----~~I~~~~~D~~~~~----~~~~fD~Iv~NPP-Yg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 280 KQNAVEAGLG----DLITFRQLQVADFQ----TEDEYGVVVANPP-YGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT 350 (393)
T ss_dssp HHHHHHTTCT----TCSEEEECCGGGCC----CCCCSCEEEECCC-CCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred HHHHHHcCCC----CceEEEECChHhCC----CCCCCCEEEECCC-CccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999999876 46788876654322 2357999887655 442 3455667777777665 77776665
Q ss_pred e
Q 023543 233 E 233 (281)
Q Consensus 233 ~ 233 (281)
.
T Consensus 351 ~ 351 (393)
T 3k0b_A 351 S 351 (393)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-09 Score=97.53 Aligned_cols=96 Identities=13% Similarity=0.038 Sum_probs=75.7
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC--CEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
++.+|||+|||+|..+..+++.. .+++++|++.+++.++++ .++.+...|..+ .+ +.||+|
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-----------~~v~~~~~d~~~----~~--~~~D~v 271 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL-----------SGIEHVGGDMFA----SV--PQGDAM 271 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-----------TTEEEEECCTTT----CC--CCEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhc-----------CCCEEEeCCccc----CC--CCCCEE
Confidence 56799999999999999888754 478999997777665531 257777765543 12 239999
Q ss_pred EEccccCCCCcHH--HHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGAVG--DLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~~~--~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++..++++..+.. .+++.+.+.|+|||.+++....
T Consensus 272 ~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 272 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 9999999877766 9999999999999999888543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.1e-08 Score=91.84 Aligned_cols=110 Identities=14% Similarity=0.059 Sum_probs=76.7
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
...+++++.+.+. ..++.+|||+|||+|.+++.+++. +.+|+++|+ +.+++.+ .++.+
T Consensus 24 P~~l~~~~~~~~~----~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------~~~~~ 85 (421)
T 2ih2_A 24 PPEVVDFMVSLAE----APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------PWAEG 85 (421)
T ss_dssp CHHHHHHHHHHCC----CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------TTEEE
T ss_pred CHHHHHHHHHhhc----cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------------CCCcE
Confidence 3456777766532 135679999999999999998873 568999999 7787655 14556
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCC-----------------------------cHHHHHHHHHHhhCCCcEEE
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEG-----------------------------AVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~-----------------------------~~~~ll~~l~~ll~~~g~~~ 229 (281)
...|..+.. ...+||+|+++.+..... ....+++.+.++|+++|.+.
T Consensus 86 ~~~D~~~~~----~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~ 161 (421)
T 2ih2_A 86 ILADFLLWE----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLV 161 (421)
T ss_dssp EESCGGGCC----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEE
T ss_pred EeCChhhcC----ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEE
Confidence 665543221 236899999975543321 12367888999999999988
Q ss_pred EEEee
Q 023543 230 LAGEL 234 (281)
Q Consensus 230 l~~~~ 234 (281)
+..+.
T Consensus 162 ~i~p~ 166 (421)
T 2ih2_A 162 FVVPA 166 (421)
T ss_dssp EEEEG
T ss_pred EEECh
Confidence 77664
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-08 Score=93.44 Aligned_cols=118 Identities=13% Similarity=0.044 Sum_probs=80.9
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---------------CCEEEEEec-hhHHHHHHHHHHHhhc
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---------------GAQVILTDL-PDRLRLLKKNIENNLR 168 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---------------g~~V~~tD~-~~~l~~~~~N~~~n~~ 168 (281)
.+++++.+.+. ...+.+|||.|||+|.+.+.+++. +.+++|+|+ +.++++++.|+..++.
T Consensus 158 ~v~~~mv~~l~----~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~ 233 (445)
T 2okc_A 158 PLIQAMVDCIN----PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI 233 (445)
T ss_dssp HHHHHHHHHHC----CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC----CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 34555554322 245779999999999888877753 356999999 8899999999998876
Q ss_pred CCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCc-----------------HHHHHHHHHHhhCCCcEEEEE
Q 023543 169 HGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA-----------------VGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 169 ~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~-----------------~~~ll~~l~~ll~~~g~~~l~ 231 (281)
.. .++.+...| ..... ...+||+|+++.++..... .-.+++.+.++|+|||++.++
T Consensus 234 ~~---~~~~i~~gD---~l~~~-~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V 306 (445)
T 2okc_A 234 GT---DRSPIVCED---SLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 306 (445)
T ss_dssp CS---SCCSEEECC---TTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred Cc---CCCCEeeCC---CCCCc-ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEE
Confidence 31 123344433 22221 1248999999766543211 237889999999999998777
Q ss_pred Ee
Q 023543 232 GE 233 (281)
Q Consensus 232 ~~ 233 (281)
.+
T Consensus 307 ~p 308 (445)
T 2okc_A 307 LP 308 (445)
T ss_dssp EE
T ss_pred EC
Confidence 65
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.7e-09 Score=94.72 Aligned_cols=133 Identities=16% Similarity=0.023 Sum_probs=77.6
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-----hhHHHHHHHHHHHhhcCCCCCCce
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-----PDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-----~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
++..|.+.+... ...++++|||||||+|..+..+++. .+|+++|+ +.+++.+. +...+ ..++
T Consensus 67 ~a~KL~~i~~~~-----~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~-----~~~v 133 (305)
T 2p41_A 67 GSAKLRWFVERN-----LVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYG-----WNLV 133 (305)
T ss_dssp HHHHHHHHHHTT-----SSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTT-----GGGE
T ss_pred HHHHHHHHHHcC-----CCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcC-----CCCe
Confidence 455565555431 2345789999999999999999988 57999998 33332111 00000 1245
Q ss_pred EEEEE-ecCCCCCCCcCCCCCcEEEEccccC---CCCcHH---HHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc
Q 023543 177 VVTEL-TWGDDPDQDLIQPLPDYVLGSDVIY---SEGAVG---DLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK 249 (281)
Q Consensus 177 ~~~~l-~w~~~~~~~~~~~~fD~Iia~d~iy---~~~~~~---~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~ 249 (281)
.+... |. .. ++..+||+|++.-... ...+.. .++..+.++|+|||.+++............++..+..
T Consensus 134 ~~~~~~D~---~~--l~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~ 208 (305)
T 2p41_A 134 RLQSGVDV---FF--IPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQR 208 (305)
T ss_dssp EEECSCCT---TT--SCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred EEEecccc---cc--CCcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHH
Confidence 55542 22 11 2346899999843321 111111 4677888999999987764332222333556666665
Q ss_pred CCe
Q 023543 250 DFV 252 (281)
Q Consensus 250 ~f~ 252 (281)
.|.
T Consensus 209 ~f~ 211 (305)
T 2p41_A 209 KHG 211 (305)
T ss_dssp HHC
T ss_pred HcC
Confidence 454
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-08 Score=93.29 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=79.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC----------------------------------------EEEEEec-hhHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA----------------------------------------QVILTDL-PDRLRLL 159 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~----------------------------------------~V~~tD~-~~~l~~~ 159 (281)
.++..|||.+||+|.+.+.+|..+. +|+++|+ +.|++.+
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 4678999999999999998887543 4999999 8899999
Q ss_pred HHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC----CCcHHHHHHHHHHhhCC--CcEEEEEEe
Q 023543 160 KKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS----EGAVGDLLDTLLQLCGT--QTTIFLAGE 233 (281)
Q Consensus 160 ~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~----~~~~~~ll~~l~~ll~~--~g~~~l~~~ 233 (281)
++|+..+++. +.+.+...|..+.. ...+||+|+++-.... ...+..+.+.+.+.+++ |+.+++...
T Consensus 273 r~Na~~~gl~----~~I~~~~~D~~~l~----~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 273 RKNAREVGLE----DVVKLKQMRLQDFK----TNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHHHHTTCT----TTEEEEECCGGGCC----CCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHcCCC----CceEEEECChHHCC----ccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 9999999876 46888876654322 1247998886554322 23567788888888876 787776655
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-09 Score=87.01 Aligned_cols=110 Identities=11% Similarity=0.038 Sum_probs=78.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.+|.+|||||||. +.+|+ +.|++.++++... ++.+...+..+.....+.+.+||+|
T Consensus 11 ~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~---------~~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 11 SAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN---------EGRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp CTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT---------TSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred CCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc---------CcEEEEechhcCccccCCCCCEeEE
Confidence 4688999999996 23999 7899999877532 2556666654321111245789999
Q ss_pred EEccccCCC-CcHHHHHHHHHHhhCCCcEEEEEEeeeCh-------hHHHHHHHHHh-cCCeEE
Q 023543 200 LGSDVIYSE-GAVGDLLDTLLQLCGTQTTIFLAGELRND-------SVLEYFLEAAM-KDFVIG 254 (281)
Q Consensus 200 ia~d~iy~~-~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-------~~~~~fl~~~~-~~f~v~ 254 (281)
+++.++++. .+...+++.++++|||||.+++....... ...+.+.+.+. .|| +.
T Consensus 68 ~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 68 LSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp EECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred EECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence 999999887 88899999999999999999986553221 11344555555 489 65
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.4e-09 Score=95.24 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=75.3
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.+.+|||+|||+|..+..+++ .+.+++++|++.+++.++++ .++.+...|..+ .++. -|+|
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-----------~~v~~~~~D~~~----~~p~--~D~v 263 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF-----------PGVTHVGGDMFK----EVPS--GDTI 263 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-----------TTEEEEECCTTT----CCCC--CSEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhc-----------CCeEEEeCCcCC----CCCC--CCEE
Confidence 467999999999999998887 45689999998887665531 368888866543 2222 2999
Q ss_pred EEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++..++|+. .....+++.+++.|+|||.+++....
T Consensus 264 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 264 LMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred EehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 999999875 44668999999999999999887654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-09 Score=100.58 Aligned_cols=89 Identities=18% Similarity=0.174 Sum_probs=66.5
Q ss_pred cchHHHHHHHHhhhhccCccccC-CCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHh--hcCCCCCCc
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLH-GKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENN--LRHGDLRGS 175 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~-~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n--~~~~~~~~~ 175 (281)
+-++...+.|-... ++ |++|||||||+|..++.+++.+.+|+++|+ +.+++.+++|++.+ +.. +
T Consensus 77 Qat~e~vA~~~a~~-------l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~-----~ 144 (410)
T 3ll7_A 77 QSSGAVTSSYKSRF-------IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGK-----D 144 (410)
T ss_dssp HSCCHHHHHHGGGG-------SCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTC-----E
T ss_pred hcCHHHHHHHHHHh-------cCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCC-----c
Confidence 33455566664432 33 899999999999999999999999999999 88999999999988 653 6
Q ss_pred eEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 176 AVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 176 i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
+.+...|..+.... ..+.+||+|++
T Consensus 145 i~~i~~Da~~~L~~-~~~~~fDvV~l 169 (410)
T 3ll7_A 145 VNILTGDFKEYLPL-IKTFHPDYIYV 169 (410)
T ss_dssp EEEEESCGGGSHHH-HHHHCCSEEEE
T ss_pred EEEEECcHHHhhhh-ccCCCceEEEE
Confidence 77877654332110 11247998886
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.6e-09 Score=92.54 Aligned_cols=81 Identities=20% Similarity=0.173 Sum_probs=61.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-h-------hHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-P-------DRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~-------~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~ 192 (281)
.++.+|||+|||+|..++.+|..|.+|+++|+ + ++++.+++|++.|+.. +++.+...|..+... .+.
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~----~ri~~~~~d~~~~l~-~~~ 156 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA----ARINLHFGNAAEQMP-ALV 156 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH----TTEEEEESCHHHHHH-HHH
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc----cCeEEEECCHHHHHH-hhh
Confidence 35789999999999999999999999999999 8 8899999999999875 358887755432111 122
Q ss_pred C--CCCcEEEEccccCC
Q 023543 193 Q--PLPDYVLGSDVIYS 207 (281)
Q Consensus 193 ~--~~fD~Iia~d~iy~ 207 (281)
+ .+||+|+.. ..|.
T Consensus 157 ~~~~~fD~V~~d-P~~~ 172 (258)
T 2r6z_A 157 KTQGKPDIVYLD-PMYP 172 (258)
T ss_dssp HHHCCCSEEEEC-CCC-
T ss_pred ccCCCccEEEEC-CCCC
Confidence 2 579998864 4444
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.5e-09 Score=95.91 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=69.4
Q ss_pred cCCCeEEEECCC------cCHHHHHHHH---cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC
Q 023543 121 LHGKKIVELGSG------CGLVGCIAAL---LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD 190 (281)
Q Consensus 121 ~~~~~VLELGcG------tG~~~i~~a~---~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~ 190 (281)
.++.+||||||| +|..++.+++ .+++|+++|+ +.|. .+ ..++.+...|.. +..
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~------~~rI~fv~GDa~---dlp 277 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD------ELRIRTIQGDQN---DAE 277 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC------BTTEEEEECCTT---CHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc------CCCcEEEEeccc---ccc
Confidence 467899999999 6666666654 3679999999 6662 11 146888775543 222
Q ss_pred cC------CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 191 LI------QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 191 ~~------~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+. ..+||+|++. ..++..+....++.+.++|||||++++....
T Consensus 278 f~~~l~~~d~sFDlVisd-gsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 278 FLDRIARRYGPFDIVIDD-GSHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHHHHHHHCCEEEEEEC-SCCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred hhhhhhcccCCccEEEEC-CcccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 22 4789999975 4455667888999999999999999887543
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.5e-08 Score=86.74 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=64.9
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCc
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGS 175 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~ 175 (281)
-.++.+++.++. ..+|.+|||+|||+|..++.+|.. ..+|+++|+ +.+++.+++|++++++. +
T Consensus 88 d~~s~l~~~~l~--------~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-----~ 154 (309)
T 2b9e_A 88 DRASCLPAMLLD--------PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-----C 154 (309)
T ss_dssp CTGGGHHHHHHC--------CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-----S
T ss_pred CHHHHHHHHHhC--------CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----e
Confidence 345666666653 356889999999999999888863 368999999 88999999999999875 6
Q ss_pred eEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 176 AVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 176 i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
+.+...|+.+.....-...+||.|+.
T Consensus 155 v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 155 CELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp EEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred EEEEeCChHhcCccccccCCCCEEEE
Confidence 77777665432211000146999886
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.7e-08 Score=87.07 Aligned_cols=75 Identities=15% Similarity=0.006 Sum_probs=59.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +++++.+++|+.. . .++.+...|.. ...+...+||+|
T Consensus 49 ~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~--~-----~~v~vi~gD~l---~~~~~~~~fD~I 118 (295)
T 3gru_A 49 TKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL--Y-----NNIEIIWGDAL---KVDLNKLDFNKV 118 (295)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH--C-----SSEEEEESCTT---TSCGGGSCCSEE
T ss_pred CCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc--C-----CCeEEEECchh---hCCcccCCccEE
Confidence 46789999999999999999999999999999 8899999999872 2 36777775543 223344579999
Q ss_pred EEcccc
Q 023543 200 LGSDVI 205 (281)
Q Consensus 200 ia~d~i 205 (281)
+++-..
T Consensus 119 v~NlPy 124 (295)
T 3gru_A 119 VANLPY 124 (295)
T ss_dssp EEECCG
T ss_pred EEeCcc
Confidence 977443
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-08 Score=87.56 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=76.1
Q ss_pred CeEEEECCCc---CHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC---C-----C
Q 023543 124 KKIVELGSGC---GLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP---D-----Q 189 (281)
Q Consensus 124 ~~VLELGcGt---G~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~---~-----~ 189 (281)
.+|||||||+ |.+...+.. .+++|+++|. +.||..++.++..+.. .++.+...|..+.. . .
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-----~~~~~v~aD~~~~~~~l~~~~~~~ 154 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-----GRTAYVEADMLDPASILDAPELRD 154 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-----SEEEEEECCTTCHHHHHTCHHHHT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-----CcEEEEEecccChhhhhccccccc
Confidence 6899999997 444444433 4679999999 8999999988765421 36778887764421 0 0
Q ss_pred Cc-CCCCCcEEEEccccCCCCc---HHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 190 DL-IQPLPDYVLGSDVIYSEGA---VGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 190 ~~-~~~~fD~Iia~d~iy~~~~---~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
.+ .+.++ .|+++.++++..+ ...+++.+.+.|+|||.++++.....
T Consensus 155 ~~D~~~p~-av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 155 TLDLTRPV-ALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TCCTTSCC-EEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred ccCcCCcc-hHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 01 12333 5778888888655 57899999999999999999876654
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=4.3e-08 Score=95.50 Aligned_cols=100 Identities=11% Similarity=0.032 Sum_probs=73.0
Q ss_pred cCCCeEEEECCCcCHHHHHH---HHcC-C--EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIA---ALLG-A--QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~---a~~g-~--~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
.+++.|||+|||+|.++..+ ++.+ . +|++++-+.+...+++++..|+.. ++|.+..-+-.+ .. ..+
T Consensus 356 ~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~----dkVtVI~gd~ee---v~-LPE 427 (637)
T 4gqb_A 356 TNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG----SQVTVVSSDMRE---WV-APE 427 (637)
T ss_dssp TCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTG----GGEEEEESCTTT---CC-CSS
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCC----CeEEEEeCccee---cc-CCc
Confidence 45678999999999985444 4333 2 589999966777889999999886 688888855332 22 336
Q ss_pred CCcEEEEcc---ccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 195 LPDYVLGSD---VIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 195 ~fD~Iia~d---~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
++|+||+-- .+.++.++ .++....++|||+|+++
T Consensus 428 KVDIIVSEwMG~fLl~E~ml-evL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 428 KADIIVSELLGSFADNELSP-ECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CEEEEECCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEE
T ss_pred ccCEEEEEcCcccccccCCH-HHHHHHHHhcCCCcEEc
Confidence 899999832 33345544 68888899999998754
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.64 E-value=5.8e-08 Score=84.71 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=56.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCc-CCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL-IQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~-~~~~fD~ 198 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +++++.+++|+... .++.+...|..+..-..+ .+.+||
T Consensus 28 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~-------~~v~~i~~D~~~~~~~~~~~~~~~~- 99 (255)
T 3tqs_A 28 QKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQ-------KNITIYQNDALQFDFSSVKTDKPLR- 99 (255)
T ss_dssp CTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTC-------TTEEEEESCTTTCCGGGSCCSSCEE-
T ss_pred CCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhC-------CCcEEEEcchHhCCHHHhccCCCeE-
Confidence 46789999999999999999999999999999 88999999988651 367777765543211111 135677
Q ss_pred EEEccccCC
Q 023543 199 VLGSDVIYS 207 (281)
Q Consensus 199 Iia~d~iy~ 207 (281)
|+++ .-|+
T Consensus 100 vv~N-lPY~ 107 (255)
T 3tqs_A 100 VVGN-LPYN 107 (255)
T ss_dssp EEEE-CCHH
T ss_pred EEec-CCcc
Confidence 5554 4444
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.6e-07 Score=88.96 Aligned_cols=155 Identities=12% Similarity=0.011 Sum_probs=93.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--------------------CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--------------------GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--------------------g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
.++.+|||.|||||.+.+.+++. ..+++|+|+ +.++.+++.|+..++.......+..+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 45779999999999887777652 136999999 889999999999887641000013333
Q ss_pred EEecCCCCCCC-cCCCCCcEEEEccccCCCC--------------cHHHHHHHHHHhhCCCcEEEEEEeee---ChhHHH
Q 023543 180 ELTWGDDPDQD-LIQPLPDYVLGSDVIYSEG--------------AVGDLLDTLLQLCGTQTTIFLAGELR---NDSVLE 241 (281)
Q Consensus 180 ~l~w~~~~~~~-~~~~~fD~Iia~d~iy~~~--------------~~~~ll~~l~~ll~~~g~~~l~~~~r---~~~~~~ 241 (281)
. ++..... ....+||+|+++.++.... ..-.++..+.++|+|+|++.+..+.. .....+
T Consensus 248 ~---gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~ 324 (541)
T 2ar0_A 248 L---GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT 324 (541)
T ss_dssp E---SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHH
T ss_pred e---CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHH
Confidence 3 3322211 1236799999876643321 12368888999999999977776532 111223
Q ss_pred HHHHHHhcCCeEEEEecCCCCCCCCC--CcEEEEEEEecC
Q 023543 242 YFLEAAMKDFVIGRVEQTQWHPDYCS--PRVVVYILVKKL 279 (281)
Q Consensus 242 ~fl~~~~~~f~v~~i~~~~~~~~~~~--~~~~i~~~~~k~ 279 (281)
.+.+.+.+.+.+..+-.-.- ..|.. -...|+.+.|++
T Consensus 325 ~iR~~L~~~~~l~~ii~Lp~-~~F~~t~v~t~Ilvl~k~~ 363 (541)
T 2ar0_A 325 DIRRDLMDKCHLHTILRLPT-GIFYAQGVKTNVLFFTKGT 363 (541)
T ss_dssp HHHHHHHHHEEEEEEEECCS-SCSSSCSCCEEEEEEEEBC
T ss_pred HHHHHHhhcCCEEEEEEcCc-CcccCCCCcEEEEEEECCC
Confidence 34444444455555432211 12332 244566666643
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.2e-07 Score=79.27 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=55.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC-CCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI-QPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~-~~~fD~ 198 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +.+++.+++|+... .++.+...|..+. .+. ..+|
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~~v~~~~~D~~~~---~~~~~~~~-- 96 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH-------DNFQVLNKDILQF---KFPKNQSY-- 96 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC-------CSEEEECCCGGGC---CCCSSCCC--
T ss_pred CCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC-------CCeEEEEChHHhC---CcccCCCe--
Confidence 46789999999999999999999999999999 88999999887532 3577776554332 122 1234
Q ss_pred EEEccccCCC
Q 023543 199 VLGSDVIYSE 208 (281)
Q Consensus 199 Iia~d~iy~~ 208 (281)
++.+++.|+.
T Consensus 97 ~vv~nlPy~~ 106 (244)
T 1qam_A 97 KIFGNIPYNI 106 (244)
T ss_dssp EEEEECCGGG
T ss_pred EEEEeCCccc
Confidence 4555566653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.7e-07 Score=91.47 Aligned_cols=106 Identities=16% Similarity=0.041 Sum_probs=76.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--------------------------------------------CEEEEEec-hhH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--------------------------------------------AQVILTDL-PDR 155 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--------------------------------------------~~V~~tD~-~~~ 155 (281)
.++.+|||.+||+|.+.+.+|..+ .+|+|+|+ +.+
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 467799999999999999888643 46999999 899
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCC-----CcHHHHHHHHHHhh---CCCcE
Q 023543 156 LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE-----GAVGDLLDTLLQLC---GTQTT 227 (281)
Q Consensus 156 l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~-----~~~~~ll~~l~~ll---~~~g~ 227 (281)
++.++.|+..+++. +.+.+...|..+... .....+||+||++.+ |.. ..+..+.+.+.+.+ .|||.
T Consensus 269 v~~A~~N~~~agv~----~~i~~~~~D~~~~~~-~~~~~~~d~Iv~NPP-YG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~ 342 (703)
T 3v97_A 269 IQRARTNARLAGIG----ELITFEVKDVAQLTN-PLPKGPYGTVLSNPP-YGERLDSEPALIALHSLLGRIMKNQFGGWN 342 (703)
T ss_dssp HHHHHHHHHHTTCG----GGEEEEECCGGGCCC-SCTTCCCCEEEECCC-CCC---CCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHcCCC----CceEEEECChhhCcc-ccccCCCCEEEeCCC-ccccccchhHHHHHHHHHHHHHHhhCCCCe
Confidence 99999999999886 468888866543211 111237999887755 432 34566666666555 47888
Q ss_pred EEEEE
Q 023543 228 IFLAG 232 (281)
Q Consensus 228 ~~l~~ 232 (281)
+++..
T Consensus 343 ~~ilt 347 (703)
T 3v97_A 343 LSLFS 347 (703)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77653
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.54 E-value=3.4e-09 Score=91.66 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=54.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC-CCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI-QPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~-~~~fD~ 198 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +.+++.+++|+.. ..++.+...|+.+ ..+. +.+| .
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~-------~~~v~~~~~D~~~---~~~~~~~~f-~ 96 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQDILQ---FQFPNKQRY-K 96 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT-------CSEEEECCSCCTT---TTCCCSSEE-E
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc-------CCceEEEECChhh---cCcccCCCc-E
Confidence 46779999999999999999998999999999 7888888877651 1356666655432 2222 2456 4
Q ss_pred EEEccccCCCC
Q 023543 199 VLGSDVIYSEG 209 (281)
Q Consensus 199 Iia~d~iy~~~ 209 (281)
|+ +++.|+..
T Consensus 97 vv-~n~Py~~~ 106 (245)
T 1yub_A 97 IV-GNIPYHLS 106 (245)
T ss_dssp EE-EECCSSSC
T ss_pred EE-EeCCcccc
Confidence 44 45556543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-07 Score=81.56 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=55.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC-CCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ-PLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~-~~fD~ 198 (281)
.++ +|||+|||+|.++..++..+++|+++|+ +++++.+++|+.. .++.+...|..+ ..+.. ..+|.
T Consensus 46 ~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~--------~~v~vi~~D~l~---~~~~~~~~~~~ 113 (271)
T 3fut_A 46 FTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG--------LPVRLVFQDALL---YPWEEVPQGSL 113 (271)
T ss_dssp CCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT--------SSEEEEESCGGG---SCGGGSCTTEE
T ss_pred CCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC--------CCEEEEECChhh---CChhhccCccE
Confidence 456 9999999999999999999999999999 8899999988752 257777755432 12221 25788
Q ss_pred EEEccccCC
Q 023543 199 VLGSDVIYS 207 (281)
Q Consensus 199 Iia~d~iy~ 207 (281)
|+++-..+-
T Consensus 114 iv~NlPy~i 122 (271)
T 3fut_A 114 LVANLPYHI 122 (271)
T ss_dssp EEEEECSSC
T ss_pred EEecCcccc
Confidence 777655433
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-06 Score=86.51 Aligned_cols=155 Identities=14% Similarity=0.019 Sum_probs=94.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC-----CEEEEEec-hhHHHHH--HHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG-----AQVILTDL-PDRLRLL--KKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g-----~~V~~tD~-~~~l~~~--~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~ 192 (281)
.++.+|||.|||+|.+.+.++... .+++|+|+ +.+++.| +.|+..|...... ....+..-++... ....
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi-~~~~I~~dD~L~~--~~~~ 396 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSN-NAPTITGEDVCSL--NPED 396 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTT-BCCEEECCCGGGC--CGGG
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCC-CcceEEecchhcc--cccc
Confidence 357899999999999988888743 35999999 8889998 7787775443111 1122222121110 1123
Q ss_pred CCCCcEEEEccccCCC-----------------------------CcHHHHHHHHHHhhCCCcEEEEEEeee----ChhH
Q 023543 193 QPLPDYVLGSDVIYSE-----------------------------GAVGDLLDTLLQLCGTQTTIFLAGELR----NDSV 239 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~-----------------------------~~~~~ll~~l~~ll~~~g~~~l~~~~r----~~~~ 239 (281)
..+||+||++.+.... .....+++.+.++|+++|++.+..+.. ....
T Consensus 397 ~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~ 476 (878)
T 3s1s_A 397 FANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNE 476 (878)
T ss_dssp GTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHH
T ss_pred cCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChH
Confidence 4679999987665220 124457888889999999987776542 1222
Q ss_pred HHHHHHHHhcCCeEEEEecCCCCCCCCCC--cEEEEEEEec
Q 023543 240 LEYFLEAAMKDFVIGRVEQTQWHPDYCSP--RVVVYILVKK 278 (281)
Q Consensus 240 ~~~fl~~~~~~f~v~~i~~~~~~~~~~~~--~~~i~~~~~k 278 (281)
.+.+.+.+.+.+.+..+-.-.-...|... ...|+.+.|+
T Consensus 477 ~kkLRk~LLe~~~I~aIIdLP~~~~F~~asv~T~ILIlrK~ 517 (878)
T 3s1s_A 477 SKAFREFLVGNFGLEHIFLYPREGLFEEVIKDTVVFVGRKG 517 (878)
T ss_dssp HHHHHHHHTTTTCEEEEEECCBCCSSCSCBCCEEEEEEETT
T ss_pred HHHHHHHHHhCCCeEEEEECCCccccCCCCCcEEEEEEEcC
Confidence 34566666677777666443322334322 3455555554
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.50 E-value=6.9e-06 Score=78.96 Aligned_cols=151 Identities=14% Similarity=-0.005 Sum_probs=94.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-----CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC---Cc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ---DL 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-----g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~---~~ 191 (281)
..+.+|||.+||||.+.+.+++. ..+++|+|+ +.++.+++.|+..++... .++.+.. ++.... ..
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~---~~~~I~~---gDtL~~d~p~~ 293 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI---ENQFLHN---ADTLDEDWPTQ 293 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG---GGEEEEE---SCTTTSCSCCS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc---CccceEe---cceeccccccc
Confidence 46789999999999877777664 457999999 889999999999987641 2444444 333322 12
Q ss_pred CCCCCcEEEEccccCCC-----------------------CcHHHHHHHHHHhhC-CCcEEEEEEeee---ChhHHHHHH
Q 023543 192 IQPLPDYVLGSDVIYSE-----------------------GAVGDLLDTLLQLCG-TQTTIFLAGELR---NDSVLEYFL 244 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~~-----------------------~~~~~ll~~l~~ll~-~~g~~~l~~~~r---~~~~~~~fl 244 (281)
...+||+||++.+.-.. ..--.++..+.++|+ ++|++.+..+.. .......+.
T Consensus 294 ~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iR 373 (542)
T 3lkd_A 294 EPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIR 373 (542)
T ss_dssp SCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHH
T ss_pred ccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHH
Confidence 34679999986543210 001248888999999 999977665532 112223455
Q ss_pred HHHhcCCeEEEEecCCCCCCCCCC--cEEEEEEEec
Q 023543 245 EAAMKDFVIGRVEQTQWHPDYCSP--RVVVYILVKK 278 (281)
Q Consensus 245 ~~~~~~f~v~~i~~~~~~~~~~~~--~~~i~~~~~k 278 (281)
+.+.+.+.+..+-.-. ...|... ...|+.+.|+
T Consensus 374 k~Lle~~~l~~II~LP-~~lF~~t~i~t~Ilvl~K~ 408 (542)
T 3lkd_A 374 KALLEEGAIDTVIGLP-ANIFFNTSIPTTVIILKKN 408 (542)
T ss_dssp HHHHHTTCEEEEEECC-SSCSSSCCCCEEEEEECSS
T ss_pred HHHHhCCceeEEEEcc-ccccCCCCCcEEEEEEecC
Confidence 5555666666553321 1223333 3455555553
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-07 Score=82.86 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=55.0
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCC----CCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDL----RGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~----~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|||+|||+|..++.+|..|++|+++|. +.+..+++.|++........ ..++.+...|-.+... .+ ..+||+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~-~~-~~~fDv 167 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT-DI-TPRPQV 167 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHST-TC-SSCCSE
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHH-hC-cccCCE
Confidence 79999999999999999999999999999 77777777776543211000 0256777644322111 11 236998
Q ss_pred EEEccccCCC
Q 023543 199 VLGSDVIYSE 208 (281)
Q Consensus 199 Iia~d~iy~~ 208 (281)
|+ .|..|..
T Consensus 168 V~-lDP~y~~ 176 (258)
T 2oyr_A 168 VY-LDPMFPH 176 (258)
T ss_dssp EE-ECCCCCC
T ss_pred EE-EcCCCCC
Confidence 76 4566654
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-06 Score=72.81 Aligned_cols=115 Identities=21% Similarity=0.131 Sum_probs=74.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhc--CCCCCCceEEEEEecCCC------C---
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLR--HGDLRGSAVVTELTWGDD------P--- 187 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~--~~~~~~~i~~~~l~w~~~------~--- 187 (281)
.+.++|||+||| ..++.+|+. +.+|+.+|. ++..+.+++|++.++. . +++.+...+.++. .
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~----~~I~~~~gda~~~~~wg~p~~~~ 102 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEG----TEVNIVWTDIGPTGDWGHPVSDA 102 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTT----CEEEEEECCCSSBCGGGCBSSST
T ss_pred hCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCC----CceEEEEeCchhhhcccccccch
Confidence 356899999985 678888876 689999999 7889999999999886 3 4677766542211 1
Q ss_pred -----CC------Cc-CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe-eeC-hhHHHHHHHH
Q 023543 188 -----DQ------DL-IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE-LRN-DSVLEYFLEA 246 (281)
Q Consensus 188 -----~~------~~-~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~-~r~-~~~~~~fl~~ 246 (281)
+. .. ...+||+|+.-.-- ....+..+.++|++||++++-.. .|. ....+.|+..
T Consensus 103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~~~~~~ 170 (202)
T 3cvo_A 103 KWRSYPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITRPVTLLFDDYSQRRWQHQVEEFLGA 170 (202)
T ss_dssp TGGGTTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSSCEEEEETTGGGCSSGGGGHHHHCC
T ss_pred hhhhHHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCCCeEEEEeCCcCCcchHHHHHHHhH
Confidence 00 01 12689998863211 12444445689999998855442 232 2234556643
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.8e-07 Score=70.18 Aligned_cols=54 Identities=28% Similarity=0.436 Sum_probs=43.8
Q ss_pred cCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcC-HHHHHHHH-cCCEEEEEec-hhHHH
Q 023543 95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCG-LVGCIAAL-LGAQVILTDL-PDRLR 157 (281)
Q Consensus 95 tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG-~~~i~~a~-~g~~V~~tD~-~~~l~ 157 (281)
-|+++|+ .|++|+.+. ...+.+|||+|||.| .++..++. .|..|++||+ +.+++
T Consensus 17 ~~~~m~e---~LaeYI~~~------~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~ 73 (153)
T 2k4m_A 17 RGSHMWN---DLAVYIIRC------SGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG 73 (153)
T ss_dssp CCCHHHH---HHHHHHHHH------SCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred chhhHHH---HHHHHHHhc------CCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence 3667755 489999875 234679999999999 59999997 9999999999 77755
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4.7e-07 Score=88.49 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=66.6
Q ss_pred CCeEEEECCCcCHHHHH---HHH-cC-----------CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC
Q 023543 123 GKKIVELGSGCGLVGCI---AAL-LG-----------AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD 186 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~---~a~-~g-----------~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~ 186 (281)
++.|||+|||+|.++.. +++ .+ .+|+++|. +.++..+++... |+.. +++.+..-+-.+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~----d~VtVI~gd~ee- 483 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWK----RRVTIIESDMRS- 483 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTT----TCSEEEESCGGG-
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCC----CeEEEEeCchhh-
Confidence 45899999999999643 332 22 27999999 555544444433 7765 568888744322
Q ss_pred CCCCcC-----CCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEE
Q 023543 187 PDQDLI-----QPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 187 ~~~~~~-----~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
..++ .++.|+||+--+-|. .+..+.++..+.+.|+|+|+++
T Consensus 484 --v~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 484 --LPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp --HHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred --cccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 1221 468999998555443 3456778888899999999754
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-07 Score=81.66 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=55.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC---CC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI---QP 194 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~---~~ 194 (281)
.++++|||+|||+|..++.++.. +.+|+++|+ +++++.+++|+..++ . ++.+...++.+... .+. ..
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~-----~v~~v~~d~~~l~~-~l~~~g~~ 97 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-D-----RVSLFKVSYREADF-LLKTLGIE 97 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-T-----TEEEEECCGGGHHH-HHHHTTCS
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-C-----cEEEEECCHHHHHH-HHHhcCCC
Confidence 46789999999999999998875 579999999 899999999998875 2 57777765532110 011 14
Q ss_pred CCcEEEE
Q 023543 195 LPDYVLG 201 (281)
Q Consensus 195 ~fD~Iia 201 (281)
+||.|++
T Consensus 98 ~~D~Vl~ 104 (301)
T 1m6y_A 98 KVDGILM 104 (301)
T ss_dssp CEEEEEE
T ss_pred CCCEEEE
Confidence 6888775
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.7e-06 Score=75.43 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=71.5
Q ss_pred HHHHHhhhhccCccccCCCeEEEECCCc------CHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCce
Q 023543 106 LGKFLEHAVDSGMLLLHGKKIVELGSGC------GLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 106 la~~l~~~~~~~~~~~~~~~VLELGcGt------G~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
+++|+... .....++.+|||||||+ |. .+++... +.+|+++|+ +. + . ++
T Consensus 50 l~~~l~~~---~l~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-v------------~-----~v 107 (290)
T 2xyq_A 50 LCQYLNTL---TLAVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-V------------S-----DA 107 (290)
T ss_dssp HHHHHTTS---CCCCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-B------------C-----SS
T ss_pred HHHHHHHh---hcCCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-C------------C-----CC
Confidence 66776311 01234678999999955 55 3333333 468999999 55 1 1 34
Q ss_pred EE-EEEecCCCCCCCcCCCCCcEEEEccccCC-----------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHH
Q 023543 177 VV-TELTWGDDPDQDLIQPLPDYVLGSDVIYS-----------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFL 244 (281)
Q Consensus 177 ~~-~~l~w~~~~~~~~~~~~fD~Iia~d~iy~-----------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl 244 (281)
.+ ...|+.+.. ...+||+|++.-.... ....+.+++.+.++|+|||.+++........ +.+.
T Consensus 108 ~~~i~gD~~~~~----~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~--~~l~ 181 (290)
T 2xyq_A 108 DSTLIGDCATVH----TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--ADLY 181 (290)
T ss_dssp SEEEESCGGGCC----CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--HHHH
T ss_pred EEEEECccccCC----ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCH--HHHH
Confidence 45 665554321 1257999997422110 2335689999999999999998865332221 2355
Q ss_pred HHHhc-CCeE
Q 023543 245 EAAMK-DFVI 253 (281)
Q Consensus 245 ~~~~~-~f~v 253 (281)
+.+.+ +|..
T Consensus 182 ~~l~~~GF~~ 191 (290)
T 2xyq_A 182 KLMGHFSWWT 191 (290)
T ss_dssp HHHTTEEEEE
T ss_pred HHHHHcCCcE
Confidence 55554 4753
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-06 Score=74.95 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=53.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|.++..++..+ .+|+++|+ +.+++.+++| . . .++.+...|..+ ..+.+...++
T Consensus 30 ~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~----~~v~~i~~D~~~---~~~~~~~~~~ 97 (249)
T 3ftd_A 30 EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----D----ERLEVINEDASK---FPFCSLGKEL 97 (249)
T ss_dssp CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----C----TTEEEECSCTTT---CCGGGSCSSE
T ss_pred CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----C----CCeEEEEcchhh---CChhHccCCc
Confidence 467899999999999999999985 78999999 8899999877 1 1 356666644332 2222111144
Q ss_pred EEEccccCCC
Q 023543 199 VLGSDVIYSE 208 (281)
Q Consensus 199 Iia~d~iy~~ 208 (281)
++.++..|+.
T Consensus 98 ~vv~NlPy~i 107 (249)
T 3ftd_A 98 KVVGNLPYNV 107 (249)
T ss_dssp EEEEECCTTT
T ss_pred EEEEECchhc
Confidence 6666677764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-06 Score=76.91 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=45.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCE----EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQ----VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWG 184 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~----V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~ 184 (281)
.++.+|||+|||+|.++..++..+.+ |+++|+ +++++.+++|. . .++.+...|..
T Consensus 41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~-------~~v~~i~~D~~ 100 (279)
T 3uzu_A 41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G-------ELLELHAGDAL 100 (279)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G-------GGEEEEESCGG
T ss_pred CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C-------CCcEEEECChh
Confidence 46789999999999999999988777 999999 88999999883 1 25777776554
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.8e-06 Score=77.95 Aligned_cols=148 Identities=10% Similarity=-0.011 Sum_probs=90.8
Q ss_pred CeEEEECCCcCHHHHHHHHc-----------------CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCC
Q 023543 124 KKIVELGSGCGLVGCIAALL-----------------GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~-----------------g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~ 185 (281)
.+|||.+||||.+.+.+++. ..+++|+|+ +.++.+++.|+..+++. .++. +.+++
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~----~~i~---i~~gD 318 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID----FNFG---KKNAD 318 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC----CBCC---SSSCC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC----cccc---eeccc
Confidence 39999999999776665431 347999999 88999999999998865 1221 12333
Q ss_pred CCCC-CcCCCCCcEEEEccccCCC-----------------------------CcHHHHHHHHHHhhCCCcEEEEEEee-
Q 023543 186 DPDQ-DLIQPLPDYVLGSDVIYSE-----------------------------GAVGDLLDTLLQLCGTQTTIFLAGEL- 234 (281)
Q Consensus 186 ~~~~-~~~~~~fD~Iia~d~iy~~-----------------------------~~~~~ll~~l~~ll~~~g~~~l~~~~- 234 (281)
.... .....+||+||++.+.-.. ..--.+++.+.++|+++|++.+..+.
T Consensus 319 tL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 319 SFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG 398 (544)
T ss_dssp TTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred hhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence 3222 1234679999987654321 01125888899999999997766543
Q ss_pred ---eChhHHHHHHHHHhcCCeEEEEecCCCCCCCCC--CcEEEEEEEecC
Q 023543 235 ---RNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCS--PRVVVYILVKKL 279 (281)
Q Consensus 235 ---r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~--~~~~i~~~~~k~ 279 (281)
+.......+-+.+.+.+.+..+-.-. ...|.. -...|+.+.|++
T Consensus 399 ~L~~~~~~~~~iRk~Lle~~~l~aII~LP-~~lF~~t~i~t~Ilvl~K~k 447 (544)
T 3khk_A 399 SMSSNTNNEGEIRKTLVEQDLVECMVALP-GQLFTNTQIPACIWFLTKDK 447 (544)
T ss_dssp HHHCCGGGHHHHHHHHHHTTCEEEEEECC-TTBCCSCSSCEEEEEEESCC
T ss_pred hhhcCcchHHHHHHHHHhCCcHhEEEECC-CCCCCCCCCCeEEEEEecCC
Confidence 22122334455555566665553321 122333 345566666643
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.17 E-value=7.4e-07 Score=77.50 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=42.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCE--EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEec
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQ--VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~--V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w 183 (281)
.++.+|||+|||+|.++. +++ +.+ |+++|+ +++++.+++|+..+ .++.+...|.
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~-------~~v~~i~~D~ 76 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG-------PKLTIYQQDA 76 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG-------GGEEEECSCG
T ss_pred CCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC-------CceEEEECch
Confidence 467899999999999999 654 677 999999 88999999876542 2566666444
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=9.8e-06 Score=70.79 Aligned_cols=145 Identities=19% Similarity=0.077 Sum_probs=88.1
Q ss_pred cCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-CC-EEEEEec-hhHHHHHHHHHHHhhcCCC
Q 023543 95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-GA-QVILTDL-PDRLRLLKKNIENNLRHGD 171 (281)
Q Consensus 95 tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~ 171 (281)
+|...=.++..|.+..... ...++.+|||||||+|-.+..++.. +. .|++.|+ -++...... ...
T Consensus 52 ~~~YrSRaA~KL~ei~ek~-----~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-----~~~-- 119 (277)
T 3evf_A 52 TGVAVSRGTAKLRWFHERG-----YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-----VQS-- 119 (277)
T ss_dssp SCBCSSTHHHHHHHHHHTT-----SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-----CCB--
T ss_pred CCCccccHHHHHHHHHHhC-----CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-----cCc--
Confidence 4666777888888888763 2346779999999999999988864 54 5888887 332100000 000
Q ss_pred CCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCc----H---HHHHHHHHHhhCCC-cEEEEEEeeeC-hhHHHH
Q 023543 172 LRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA----V---GDLLDTLLQLCGTQ-TTIFLAGELRN-DSVLEY 242 (281)
Q Consensus 172 ~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~----~---~~ll~~l~~ll~~~-g~~~l~~~~r~-~~~~~~ 242 (281)
...++.... ++.....+.+.+||+|++ |+.-+... . -.|++.+.+.|+|| |.+++ -..+. ...+..
T Consensus 120 ~g~~ii~~~---~~~dv~~l~~~~~DlVls-D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~pyg~~~~~ 194 (277)
T 3evf_A 120 LGWNIITFK---DKTDIHRLEPVKCDTLLC-DIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLAPYMPDVLE 194 (277)
T ss_dssp TTGGGEEEE---CSCCTTTSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESCTTSHHHHH
T ss_pred CCCCeEEEe---ccceehhcCCCCccEEEe-cCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecCCCCccHHH
Confidence 000222222 111122345678999987 55333111 1 13578888999999 98776 44451 344567
Q ss_pred HHHHHhcCCeEEEE
Q 023543 243 FLEAAMKDFVIGRV 256 (281)
Q Consensus 243 fl~~~~~~f~v~~i 256 (281)
|+..+++.|.-..+
T Consensus 195 l~~~lk~~F~~V~~ 208 (277)
T 3evf_A 195 KLELLQRRFGGTVI 208 (277)
T ss_dssp HHHHHHHHHCCEEE
T ss_pred HHHHHHHhcCCEEE
Confidence 88888888874444
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00016 Score=64.06 Aligned_cols=135 Identities=7% Similarity=-0.046 Sum_probs=87.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+.++||=||-|.|.+.-.+.+. ..+|+++|+ +.+++.+++-+.......-...++.+..-|...... -...+||
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~--~~~~~yD 159 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN--QTSQTFD 159 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS--CSSCCEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh--hccccCC
Confidence 35689999999999888777764 357999999 888999998764321110012567777755433222 2346899
Q ss_pred EEEE--ccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeEEEEe
Q 023543 198 YVLG--SDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVIGRVE 257 (281)
Q Consensus 198 ~Iia--~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v~~i~ 257 (281)
+||. .|...... .-..+++.+++.|+|+|++..-... -....+...++.+++-|......
T Consensus 160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~~ 225 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFY 225 (294)
T ss_dssp EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEEE
T ss_pred EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCceeee
Confidence 9985 33322211 1367899999999999987653322 23344556677777777655443
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1.5e-05 Score=70.60 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=42.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHh
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENN 166 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n 166 (281)
.+|..|||++||+|.++++++++|.+++++|+ +++++.+++|+...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999 88999999998775
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.8e-05 Score=71.31 Aligned_cols=114 Identities=12% Similarity=0.037 Sum_probs=72.1
Q ss_pred CCeEEEECCCcCHHHHHHHH------------c-----CCEEEEEech-hHHHHHHHHHHHhhcCC-------CCCCceE
Q 023543 123 GKKIVELGSGCGLVGCIAAL------------L-----GAQVILTDLP-DRLRLLKKNIENNLRHG-------DLRGSAV 177 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~------------~-----g~~V~~tD~~-~~l~~~~~N~~~n~~~~-------~~~~~i~ 177 (281)
.-+|+|||||+|..++.+.. . ..+|...|++ .....+=+++....... .......
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 56899999999988876621 1 2369999994 33433333332211000 0000111
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCCCC--------------------------------------cHHHHHHHHH
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYSEG--------------------------------------AVGDLLDTLL 219 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~--------------------------------------~~~~ll~~l~ 219 (281)
+....-+......+++.+||+|.++-++|+.+ ++..+++..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233334456778999999999999844 4455788899
Q ss_pred HhhCCCcEEEEEEeeeC
Q 023543 220 QLCGTQTTIFLAGELRN 236 (281)
Q Consensus 220 ~ll~~~g~~~l~~~~r~ 236 (281)
+.|+|||+++++...|.
T Consensus 213 ~eL~pGG~mvl~~~gr~ 229 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRT 229 (374)
T ss_dssp HHEEEEEEEEEEEEECC
T ss_pred HHhCCCCEEEEEEecCC
Confidence 99999999998887764
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0001 Score=67.23 Aligned_cols=138 Identities=19% Similarity=0.123 Sum_probs=90.5
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCC-CCCCce
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHG-DLRGSA 176 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~-~~~~~i 176 (281)
.+|.+.+..|. ..+|.+|||++||.|-=++.++..+. .|++.|+ +..++.+++|+++.+... ....++
T Consensus 135 ~aS~l~~~~L~--------~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v 206 (359)
T 4fzv_A 135 AASLLPVLALG--------LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQV 206 (359)
T ss_dssp GGGHHHHHHHC--------CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSE
T ss_pred HHHHHHHHHhC--------CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCce
Confidence 56666665553 35788999999999977777776655 5999999 778999999999887641 122356
Q ss_pred EEEEEecCCCCCCCcCCCCCcEEEE----cc---ccCC-C----------------CcHHHHHHHHHHhhCCCcEEEEE-
Q 023543 177 VVTELTWGDDPDQDLIQPLPDYVLG----SD---VIYS-E----------------GAVGDLLDTLLQLCGTQTTIFLA- 231 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~~~~fD~Iia----~d---~iy~-~----------------~~~~~ll~~l~~ll~~~g~~~l~- 231 (281)
.+...|.... .......||.|+. +. .+.. . .....++....++++|||+++.+
T Consensus 207 ~v~~~D~~~~--~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT 284 (359)
T 4fzv_A 207 RVTSWDGRKW--GELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST 284 (359)
T ss_dssp EEECCCGGGH--HHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeCchhhc--chhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 6665442111 0123467999986 11 1111 1 11346778888899999986544
Q ss_pred Eee---eChhHHHHHHHHHh
Q 023543 232 GEL---RNDSVLEYFLEAAM 248 (281)
Q Consensus 232 ~~~---r~~~~~~~fl~~~~ 248 (281)
+.. -|..+++.|++...
T Consensus 285 CSl~~~ENE~vV~~~L~~~~ 304 (359)
T 4fzv_A 285 CSLSHLQNEYVVQGAIELLA 304 (359)
T ss_dssp SCCCTTTTHHHHHHHHHHHH
T ss_pred CCCchhhCHHHHHHHHHhCC
Confidence 433 35667788887654
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=7.8e-05 Score=68.49 Aligned_cols=112 Identities=20% Similarity=0.143 Sum_probs=70.4
Q ss_pred CCeEEEECCCcCHHHHHHHHc--------------C-----CEEEEEech--hH---HHHH---HHHHHH-hhcCCCCCC
Q 023543 123 GKKIVELGSGCGLVGCIAALL--------------G-----AQVILTDLP--DR---LRLL---KKNIEN-NLRHGDLRG 174 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~--------------g-----~~V~~tD~~--~~---l~~~---~~N~~~-n~~~~~~~~ 174 (281)
.-+|+||||++|..++.+... + .+|+..|++ +- ...+ .+.+.. ++.. .+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~---~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRK---IG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCC---TT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCC---CC
Confidence 468999999999888765432 1 258999995 21 2222 222211 2211 11
Q ss_pred ceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcH---------------------------------------HHHH
Q 023543 175 SAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAV---------------------------------------GDLL 215 (281)
Q Consensus 175 ~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~---------------------------------------~~ll 215 (281)
. .+....-+......+++.++|+|.++.+++|-+.. ..++
T Consensus 130 ~-~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL 208 (384)
T 2efj_A 130 S-CLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFL 208 (384)
T ss_dssp S-EEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred c-eEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2 33333334444556778899999999999983322 1236
Q ss_pred HHHHHhhCCCcEEEEEEeeeChh
Q 023543 216 DTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 216 ~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
+...+-|+|||++++....|...
T Consensus 209 ~~Ra~eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 209 RIHSEELISRGRMLLTFICKEDE 231 (384)
T ss_dssp HHHHHHEEEEEEEEEEEECCCTT
T ss_pred HHHHHHhccCCeEEEEEecCCCc
Confidence 67789999999999988776543
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.83 E-value=7.5e-06 Score=71.93 Aligned_cols=128 Identities=12% Similarity=0.014 Sum_probs=95.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-cCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~~~~~fD~ 198 (281)
+.+..+||+=+|||.+|+.+...+.+++++|. +..++.+++|++.. .++.+...|-....... -..++||+
T Consensus 90 ~n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~-------~~~~V~~~D~~~~L~~l~~~~~~fdL 162 (283)
T 2oo3_A 90 INLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN-------KKVYVNHTDGVSKLNALLPPPEKRGL 162 (283)
T ss_dssp HSSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT-------SCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred hcCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcC-------CcEEEEeCcHHHHHHHhcCCCCCccE
Confidence 56788999999999999998887778999999 88999999998651 35666664421100000 01246996
Q ss_pred EEEccccCC-CCcHHHHHHHHHH--hhCCCcEEEEEEeeeChhHHHHHHHHHhc-CCeEEEE
Q 023543 199 VLGSDVIYS-EGAVGDLLDTLLQ--LCGTQTTIFLAGELRNDSVLEYFLEAAMK-DFVIGRV 256 (281)
Q Consensus 199 Iia~d~iy~-~~~~~~ll~~l~~--ll~~~g~~~l~~~~r~~~~~~~fl~~~~~-~f~v~~i 256 (281)
|+ .|.-|. ....+.+++.+.+ .+.++|++++=++.......+.|.+.+++ +.++-.+
T Consensus 163 Vf-iDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~~~l~~ 223 (283)
T 2oo3_A 163 IF-IDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSVRI 223 (283)
T ss_dssp EE-ECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSSEEEE
T ss_pred EE-ECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCCCeEEE
Confidence 55 788888 5789999988887 45799999999999888888889988863 4444333
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.6e-05 Score=67.85 Aligned_cols=129 Identities=13% Similarity=-0.037 Sum_probs=71.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-------C-------CEEEEEec-h---hHHH-----------HHHHHHHHhhcCC--
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-------G-------AQVILTDL-P---DRLR-----------LLKKNIENNLRHG-- 170 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-------g-------~~V~~tD~-~---~~l~-----------~~~~N~~~n~~~~-- 170 (281)
++.+|||+|+|+|+..+.++.. + .+|+++|. + +.+. .++.++.......
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3469999999999988775542 2 26999998 6 3333 4555555421100
Q ss_pred -------CCCCceEEEEEecCCCCCCCcC---CCCCcEEEEccccC---CCCc-HHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 171 -------DLRGSAVVTELTWGDDPDQDLI---QPLPDYVLGSDVIY---SEGA-VGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 171 -------~~~~~i~~~~l~w~~~~~~~~~---~~~fD~Iia~d~iy---~~~~-~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
....++.+...|..+.... +. ..+||+|.. |..- +++. .+.+++.+.++|+|||++.. +..
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~-~~~~~~~~~D~ifl-D~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t-ysa-- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQ-LDDSLNQKVDAWFL-DGFAPAKNPDMWTQNLFNAMARLARPGGTLAT-FTS-- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGG-SCGGGTTCEEEEEE-CSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE-SCC--
T ss_pred hhheeccCCceEEEEEECcHHHHHhh-cccccCCeEEEEEE-CCCCcccChhhcCHHHHHHHHHHcCCCcEEEE-EeC--
Confidence 0001222332222111111 11 137998886 4321 2221 46799999999999998753 222
Q ss_pred hhHHHHHHHHHh-cCCeEEEEec
Q 023543 237 DSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 237 ~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
... +...+. .||.+++++.
T Consensus 215 a~~---vrr~L~~aGF~v~~~~g 234 (257)
T 2qy6_A 215 AGF---VRRGLQEAGFTMQKRKG 234 (257)
T ss_dssp BHH---HHHHHHHHTEEEEEECC
T ss_pred CHH---HHHHHHHCCCEEEeCCC
Confidence 122 223333 5999988754
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00032 Score=63.90 Aligned_cols=75 Identities=15% Similarity=0.037 Sum_probs=50.5
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..+|.+||||||.+|-.+-.+++.|++|+++|...+-..+. .+ .++.+..-| .+.......+||+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l~----~~-------~~V~~~~~d---~~~~~~~~~~~D~v 274 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLM----DT-------GQVTWLRED---GFKFRPTRSNISWM 274 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHHH----TT-------TCEEEECSC---TTTCCCCSSCEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhhc----cC-------CCeEEEeCc---cccccCCCCCcCEE
Confidence 35789999999999999999999999999999844322211 11 356555533 33333344689987
Q ss_pred EEccccCCCC
Q 023543 200 LGSDVIYSEG 209 (281)
Q Consensus 200 ia~d~iy~~~ 209 (281)
++ |+.-++.
T Consensus 275 vs-Dm~~~p~ 283 (375)
T 4auk_A 275 VC-DMVEKPA 283 (375)
T ss_dssp EE-CCSSCHH
T ss_pred EE-cCCCChH
Confidence 75 6654443
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.76 E-value=5.9e-05 Score=65.50 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=42.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLR 168 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~ 168 (281)
.+|..|||..||+|..++++.++|.+++++|+ +..++.+++|+..+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence 47889999999999999999999999999999 8889999999988754
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.74 E-value=3.7e-05 Score=67.25 Aligned_cols=144 Identities=16% Similarity=0.013 Sum_probs=85.7
Q ss_pred CceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCC
Q 023543 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDL 172 (281)
Q Consensus 96 G~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (281)
|...=.++..|.+..++. ...++.+|||||||.|-.+.++++ .++ .|+++|+ .++...+... ...+
T Consensus 69 g~YrSRAAfKL~ei~eK~-----~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g----- 137 (282)
T 3gcz_A 69 GIAVSRGSAKLRWMEERG-----YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG----- 137 (282)
T ss_dssp SBCSSTHHHHHHHHHHTT-----SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT-----
T ss_pred CCEecHHHHHHHHHHHhc-----CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC-----
Confidence 555566788888877753 245677999999999999998885 455 5899999 4431111000 0000
Q ss_pred CCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCc-------HHHHHHHHHHhhCCC--cEEEEEEeee-ChhHHHH
Q 023543 173 RGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA-------VGDLLDTLLQLCGTQ--TTIFLAGELR-NDSVLEY 242 (281)
Q Consensus 173 ~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~-------~~~ll~~l~~ll~~~--g~~~l~~~~r-~~~~~~~ 242 (281)
.++.... .+.....+...++|+|++ |.--+... .-.|++.+.+.|+|| |.+++- ..+ ....+..
T Consensus 138 -~~ii~~~---~~~dv~~l~~~~~DvVLS-DmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K-vF~pyg~~~~~ 211 (282)
T 3gcz_A 138 -WNLIRFK---DKTDVFNMEVIPGDTLLC-DIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK-VLCPYTPLIME 211 (282)
T ss_dssp -GGGEEEE---CSCCGGGSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-ESCCCSHHHHH
T ss_pred -CceEEee---CCcchhhcCCCCcCEEEe-cCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE-EecCCCccHHH
Confidence 1121111 111112345678999887 44433111 123677788899999 886553 444 1344567
Q ss_pred HHHHHhcCCeEEEE
Q 023543 243 FLEAAMKDFVIGRV 256 (281)
Q Consensus 243 fl~~~~~~f~v~~i 256 (281)
|+..+++.|.-..+
T Consensus 212 l~~~lk~~F~~V~~ 225 (282)
T 3gcz_A 212 ELSRLQLKHGGGLV 225 (282)
T ss_dssp HHHHHHHHHCCEEE
T ss_pred HHHHHHHhcCCEEE
Confidence 88888888874444
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0033 Score=60.08 Aligned_cols=159 Identities=9% Similarity=0.015 Sum_probs=93.4
Q ss_pred HHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---------------CCEEEEEec-hhHHHHHHHHHHHhhcC
Q 023543 106 LGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---------------GAQVILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 106 la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---------------g~~V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
+++++.+.+. ...+.+|+|-.||||.+-+.+... ...++|.|+ +.+..+++-|+..++..
T Consensus 205 Vv~lmv~l~~----p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~ 280 (530)
T 3ufb_A 205 VVRFMVEVMD----PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE 280 (530)
T ss_dssp HHHHHHHHHC----CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhhc----cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc
Confidence 4455554432 246779999999999665555431 235999999 88899999999998875
Q ss_pred CCCCCceEEEEEecCCCCCCC----cCCCCCcEEEEccccCCC----------------CcHHHHHHHHHHhhC------
Q 023543 170 GDLRGSAVVTELTWGDDPDQD----LIQPLPDYVLGSDVIYSE----------------GAVGDLLDTLLQLCG------ 223 (281)
Q Consensus 170 ~~~~~~i~~~~l~w~~~~~~~----~~~~~fD~Iia~d~iy~~----------------~~~~~ll~~l~~ll~------ 223 (281)
. . .+.+++..... ....+||+||++.+.-.. ..--.+++.+.+.|+
T Consensus 281 ~-----~---~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l 352 (530)
T 3ufb_A 281 Y-----P---RIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGS 352 (530)
T ss_dssp C-----C---EEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSS
T ss_pred c-----c---cccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhcc
Confidence 1 1 23344433321 123579999997665211 112345666667776
Q ss_pred -CCcEEEEEEee----eChhHHHHHHHHHhcCCeEEEEecCCCCCCCC---CCcEEEEEEEec
Q 023543 224 -TQTTIFLAGEL----RNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYC---SPRVVVYILVKK 278 (281)
Q Consensus 224 -~~g~~~l~~~~----r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~---~~~~~i~~~~~k 278 (281)
+||++.++.+. ++. ....+-+.+.+.+.+..|-.-+- ..|. .-...|+.+.|+
T Consensus 353 ~~gGr~avVlP~g~Lf~~~-~~~~iRk~Lle~~~l~aII~LP~-~~F~~~tgi~t~Il~~~K~ 413 (530)
T 3ufb_A 353 DNGGRAAVVVPNGTLFSDG-ISARIKEELLKNFNLHTIVRLPE-GVFAPYTDIAGNLLFFDRS 413 (530)
T ss_dssp SSCCEEEEEEEHHHHHCCT-HHHHHHHHHHHHSEEEEEEECCT-TTTTTTCCCCEEEEEEESS
T ss_pred CCCceEEEEecchhhhccc-hHHHHHHHHhhcCEEEEEEECCc-ccCcCCCCCcEEEEEEECC
Confidence 68987666553 222 22334455556677666643211 1222 234556666664
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0028 Score=55.76 Aligned_cols=145 Identities=17% Similarity=0.070 Sum_probs=86.8
Q ss_pred cCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-CC-EEEEEec-hhHHHHHHHHHHHhhcCCC
Q 023543 95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-GA-QVILTDL-PDRLRLLKKNIENNLRHGD 171 (281)
Q Consensus 95 tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~ 171 (281)
+|...=.++..|.+..... ...++++||||||++|-.+-.++.. ++ .|+++|+ ..+...... +..
T Consensus 59 ~g~yrSRaa~KL~ei~ek~-----l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~------ 126 (300)
T 3eld_A 59 VGISVSRGAAKIRWLHERG-----YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT------ 126 (300)
T ss_dssp SCCCSSTTHHHHHHHHHHT-----SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB------
T ss_pred CCCccchHHHHHHHHHHhC-----CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc------
Confidence 3555566788888877652 2457889999999999999999864 55 5999998 432100000 000
Q ss_pred CCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCc-------HHHHHHHHHHhhCCC-cEEEEEEeee-ChhHHHH
Q 023543 172 LRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA-------VGDLLDTLLQLCGTQ-TTIFLAGELR-NDSVLEY 242 (281)
Q Consensus 172 ~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~-------~~~ll~~l~~ll~~~-g~~~l~~~~r-~~~~~~~ 242 (281)
...++.... .......+...++|+|++ |+.-+... ...|++.+.+.|+|| |.+++- ..+ .......
T Consensus 127 ~~~~iv~~~---~~~di~~l~~~~~DlVls-D~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K-vF~~yG~~~~~ 201 (300)
T 3eld_A 127 LGWNIVKFK---DKSNVFTMPTEPSDTLLC-DIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK-VLAPYHPDVIE 201 (300)
T ss_dssp TTGGGEEEE---CSCCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE-ESSTTSHHHHH
T ss_pred cCCceEEee---cCceeeecCCCCcCEEee-cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE-eccccCccHHH
Confidence 001121111 111111234578999987 55544221 134688888999999 987654 445 1334567
Q ss_pred HHHHHhcCCeEEEE
Q 023543 243 FLEAAMKDFVIGRV 256 (281)
Q Consensus 243 fl~~~~~~f~v~~i 256 (281)
|+..++..|.-..+
T Consensus 202 ll~~lk~~F~~V~~ 215 (300)
T 3eld_A 202 KLERLQLRFGGGIV 215 (300)
T ss_dssp HHHHHHHHHCCEEE
T ss_pred HHHHHHHhCCcEEE
Confidence 88888888874444
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00012 Score=64.47 Aligned_cols=105 Identities=13% Similarity=0.027 Sum_probs=72.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-------CCEEEEEec-hh--------------------------HHHHHHHHHHHhh
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-------GAQVILTDL-PD--------------------------RLRLLKKNIENNL 167 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-------g~~V~~tD~-~~--------------------------~l~~~~~N~~~n~ 167 (281)
..++|||+|+..|..++.++.. +.+|+++|. .. .++.+++|++..+
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 4679999999999988877642 567999995 21 3677899999887
Q ss_pred cCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEE-ccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 168 RHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLG-SDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 168 ~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia-~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+. .+++.+...+..+..+. +...+||+|.. +| .| ......++.+..+|+|||++++-..
T Consensus 186 l~---~~~I~li~Gda~etL~~-~~~~~~d~vfIDaD-~y--~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 186 LL---DEQVRFLPGWFKDTLPT-APIDTLAVLRMDGD-LY--ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CC---STTEEEEESCHHHHSTT-CCCCCEEEEEECCC-SH--HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CC---cCceEEEEeCHHHHHhh-CCCCCEEEEEEcCC-cc--ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 63 14788887554332222 23467897764 33 22 2345678888899999998776554
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.48 E-value=7.4e-05 Score=68.06 Aligned_cols=111 Identities=14% Similarity=0.055 Sum_probs=73.5
Q ss_pred CCeEEEECCCcCHHHHHHHHc------------C------CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEec
Q 023543 123 GKKIVELGSGCGLVGCIAALL------------G------AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~------------g------~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w 183 (281)
.-+|+||||++|..++.+... + .+|+..|+ ......+-+++...... . ...+....-
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~---~-~~~f~~gvp 127 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV---D-GVCFINGVP 127 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC---T-TCEEEEEEE
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhccc---C-CCEEEEecc
Confidence 358999999999666543321 2 25999999 44566555554331100 0 123333333
Q ss_pred CCCCCCCcCCCCCcEEEEccccCCCCc---------------------------------HHHHHHHHHHhhCCCcEEEE
Q 023543 184 GDDPDQDLIQPLPDYVLGSDVIYSEGA---------------------------------VGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 184 ~~~~~~~~~~~~fD~Iia~d~iy~~~~---------------------------------~~~ll~~l~~ll~~~g~~~l 230 (281)
+......+++.++|+|.++-+++|-+. +..+++..++-|+|||++++
T Consensus 128 gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl 207 (359)
T 1m6e_X 128 GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 444455677889999999999988322 34568889999999999998
Q ss_pred EEeeeCh
Q 023543 231 AGELRND 237 (281)
Q Consensus 231 ~~~~r~~ 237 (281)
....|..
T Consensus 208 ~~~gr~~ 214 (359)
T 1m6e_X 208 TILGRRS 214 (359)
T ss_dssp EEEECSS
T ss_pred EEecCCC
Confidence 8876643
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00072 Score=58.36 Aligned_cols=139 Identities=16% Similarity=0.017 Sum_probs=77.5
Q ss_pred cCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCE----EEEEec--hhHHHHHHHHHHHh
Q 023543 95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQ----VILTDL--PDRLRLLKKNIENN 166 (281)
Q Consensus 95 tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~----V~~tD~--~~~l~~~~~N~~~n 166 (281)
+|...=.++..|.+.-++. ...+|.+||||||+.|-.+.+++.. ... |+++|+ ..+... . .
T Consensus 51 ~g~yRSRAayKL~EIdeK~-----likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-~-----~ 119 (269)
T 2px2_A 51 GGHPVSRGTAKLRWLVERR-----FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-S-----Y 119 (269)
T ss_dssp CSCCSSTHHHHHHHHHHTT-----SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-S-----T
T ss_pred CCCcccHHHHHHHHHHHcC-----CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-C-----C
Confidence 4555555666666555432 3456889999999999999999886 223 455552 111000 0 0
Q ss_pred hcCCCCCCceEEEEE-ecCCCCCCCcCCCCCcEEEEccccCCCC--------cHHHHHHHHHHhhCCCc-EEEEEEeeeC
Q 023543 167 LRHGDLRGSAVVTEL-TWGDDPDQDLIQPLPDYVLGSDVIYSEG--------AVGDLLDTLLQLCGTQT-TIFLAGELRN 236 (281)
Q Consensus 167 ~~~~~~~~~i~~~~l-~w~~~~~~~~~~~~fD~Iia~d~iy~~~--------~~~~ll~~l~~ll~~~g-~~~l~~~~r~ 236 (281)
+. .-+.+... |..+ +...++|+|++ |.--+.. .+. .+..+.+.|+|+| .+++=.-.-.
T Consensus 120 Gv-----~~i~~~~G~Df~~-----~~~~~~DvVLS-DMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~FvvKVFqg~ 187 (269)
T 2px2_A 120 GW-----NIVTMKSGVDVFY-----KPSEISDTLLC-DIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCIKILCPY 187 (269)
T ss_dssp TG-----GGEEEECSCCGGG-----SCCCCCSEEEE-CCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEEEESCTT
T ss_pred Cc-----eEEEeeccCCccC-----CCCCCCCEEEe-CCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEEEECCCC
Confidence 10 11223222 3221 23458999885 3322211 122 5667778899999 6655322222
Q ss_pred hhHHHHHHHHHhcCCeEEEE
Q 023543 237 DSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 237 ~~~~~~fl~~~~~~f~v~~i 256 (281)
...+.++++.+++.|.-..+
T Consensus 188 ~~~~~~~l~~lk~~F~~vkv 207 (269)
T 2px2_A 188 MPKVIEKLESLQRRFGGGLV 207 (269)
T ss_dssp SHHHHHHHHHHHHHHCCEEE
T ss_pred chHHHHHHHHHHHHcCCEEE
Confidence 24556678888887875444
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0014 Score=59.18 Aligned_cols=41 Identities=27% Similarity=0.190 Sum_probs=35.9
Q ss_pred CeEEEECCCcCHHHHHHHHcC--CE-EEEEec-hhHHHHHHHHHH
Q 023543 124 KKIVELGSGCGLVGCIAALLG--AQ-VILTDL-PDRLRLLKKNIE 164 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g--~~-V~~tD~-~~~l~~~~~N~~ 164 (281)
.+||||.||+|.+++.+...| ++ |.++|+ +.+++..+.|..
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~ 47 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP 47 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc
Confidence 489999999999999999988 44 899999 888998888864
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.012 Score=51.77 Aligned_cols=127 Identities=14% Similarity=0.071 Sum_probs=74.6
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCc--C-HH-HHHHHHc---CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGC--G-LV-GCIAALL---GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGt--G-~~-~i~~a~~---g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
-|++||... ......|.+|||||||+ | .+ +.++.+. |+.|+++|+.++.. . ..+
T Consensus 95 qlcqyl~~~---~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-----------d----a~~- 155 (344)
T 3r24_A 95 QLCQYLNTL---TLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-----------D----ADS- 155 (344)
T ss_dssp HHHHHHTTS---CCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----------S----SSE-
T ss_pred HHHHHhccc---cEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----------C----CCe-
Confidence 478888542 11235689999999854 2 22 3344443 35899999955411 0 011
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEE---------ccccC--CCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHH
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLG---------SDVIY--SEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEA 246 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia---------~d~iy--~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~ 246 (281)
+...|. .......+||+||+ .|.-. .....+..+..+.+.|+|||.+++=...... ..++..
T Consensus 156 ~IqGD~----~~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg---~~~L~~ 228 (344)
T 3r24_A 156 TLIGDC----ATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW---NADLYK 228 (344)
T ss_dssp EEESCG----GGEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC---CHHHHH
T ss_pred EEEccc----cccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC---HHHHHH
Confidence 233221 11223578999997 11111 2335788888899999999998765433222 235666
Q ss_pred HhcCCeEEEEe
Q 023543 247 AMKDFVIGRVE 257 (281)
Q Consensus 247 ~~~~f~v~~i~ 257 (281)
+++.|....+.
T Consensus 229 lrk~F~~VK~f 239 (344)
T 3r24_A 229 LMGHFSWWTAF 239 (344)
T ss_dssp HHTTEEEEEEE
T ss_pred HHhhCCeEEEE
Confidence 66788865554
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0024 Score=58.30 Aligned_cols=131 Identities=18% Similarity=0.123 Sum_probs=77.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHh-h--cCCCCCCceEEEEEecCCCCCC-CcCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENN-L--RHGDLRGSAVVTELTWGDDPDQ-DLIQPL 195 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n-~--~~~~~~~~i~~~~l~w~~~~~~-~~~~~~ 195 (281)
+.++||=||-|.|...-.+.+. ..+|+++|+ +++++.+++-.... + .......++++..-|....... .-...+
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~ 284 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 284 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence 5689999999999887777764 447999999 88899998764221 1 1100012344444221100000 012357
Q ss_pred CcEEEEc--cccCCC--------CcHHHHHHHHHHhhCCCcEEEEEEee-eChhHHHHHHHHHhcCCe
Q 023543 196 PDYVLGS--DVIYSE--------GAVGDLLDTLLQLCGTQTTIFLAGEL-RNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 196 fD~Iia~--d~iy~~--------~~~~~ll~~l~~ll~~~g~~~l~~~~-r~~~~~~~fl~~~~~~f~ 252 (281)
||+||.- |..... -....+++.+++.|+|+|+++.-... ...+.+..+.+.+++-|.
T Consensus 285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF~ 352 (381)
T 3c6k_A 285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYC 352 (381)
T ss_dssp EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSSS
T ss_pred eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhCC
Confidence 9998852 211111 11367889999999999987653222 223445666777776554
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.016 Score=50.92 Aligned_cols=143 Identities=17% Similarity=0.039 Sum_probs=80.1
Q ss_pred cCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cCCE-EEEEec-hhHHH--HHHHHHHHhhcC
Q 023543 95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LGAQ-VILTDL-PDRLR--LLKKNIENNLRH 169 (281)
Q Consensus 95 tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g~~-V~~tD~-~~~l~--~~~~N~~~n~~~ 169 (281)
+|...=.++..|.+..... ...++.+||||||++|-.+..++. .|++ |+++|+ ..--+ ... +..+..
T Consensus 72 ~g~y~SR~~~KL~ei~~~~-----~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~---~ql~w~ 143 (321)
T 3lkz_A 72 GGHPVSRGTAKLRWLVERR-----FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLV---QSYGWN 143 (321)
T ss_dssp SCCCSSTHHHHHHHHHHTT-----SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCC---CBTTGG
T ss_pred CCCccchHHHHHHHHHHhc-----CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchh---hhcCCc
Confidence 4666667777777776652 245677999999999999886665 5664 999999 33100 000 000000
Q ss_pred CCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCc--H-----HHHHHHHHHhhCCC-cEEEEEEeeeC-hhHH
Q 023543 170 GDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA--V-----GDLLDTLLQLCGTQ-TTIFLAGELRN-DSVL 240 (281)
Q Consensus 170 ~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~--~-----~~ll~~l~~ll~~~-g~~~l~~~~r~-~~~~ 240 (281)
-+.+.. +-+. ..+...++|+|++ |+--.... . -.+++.+.+.|+++ |.+++ -.... ...+
T Consensus 144 -----lV~~~~---~~Dv-~~l~~~~~D~ivc-DigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~-KVl~pY~~~v 212 (321)
T 3lkz_A 144 -----IVTMKS---GVDV-FYRPSECCDTLLC-DIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV-KVLCPYMPKV 212 (321)
T ss_dssp -----GEEEEC---SCCT-TSSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE-EESCTTSHHH
T ss_pred -----ceEEEe---ccCH-hhCCCCCCCEEEE-ECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE-EEcCCCChHH
Confidence 122222 1011 1223367997774 55532221 1 12566667788888 65443 23333 1344
Q ss_pred HHHHHHHhcCCeEEEE
Q 023543 241 EYFLEAAMKDFVIGRV 256 (281)
Q Consensus 241 ~~fl~~~~~~f~v~~i 256 (281)
..+++.++..|.-..+
T Consensus 213 ~e~l~~lq~~fgg~lv 228 (321)
T 3lkz_A 213 IEKMELLQRRYGGGLV 228 (321)
T ss_dssp HHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHhCCEeE
Confidence 4688888877765554
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0078 Score=52.73 Aligned_cols=41 Identities=22% Similarity=0.084 Sum_probs=37.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKK 161 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~ 161 (281)
.+++.+||.+||.|--+..+++.+.+|+++|. +++++.+++
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG 62 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 46789999999999999888887889999999 889999887
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.051 Score=48.74 Aligned_cols=140 Identities=19% Similarity=0.152 Sum_probs=74.9
Q ss_pred eEEEECCCcCHHHHHHHHcCC--E-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 125 KIVELGSGCGLVGCIAALLGA--Q-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~--~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
+++||-||+|-+++.+...|. + |.++|+ +.+.+..+.|.... .+..-|+.+.....+....+|+++
T Consensus 5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~----------~~~~~DI~~~~~~~~~~~~~D~l~ 74 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPET----------NLLNRNIQQLTPQVIKKWNVDTIL 74 (333)
T ss_dssp EEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTS----------CEECCCGGGCCHHHHHHTTCCEEE
T ss_pred EEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCC----------ceeccccccCCHHHhccCCCCEEE
Confidence 799999999988888888885 5 789999 77787777775321 112222222111112223689998
Q ss_pred EccccCCC--------------CcHHHHHHHHHHhhCCCcEEEEEEeeeC---hhHHHHHHHHHhc-CCeEEEEecCCCC
Q 023543 201 GSDVIYSE--------------GAVGDLLDTLLQLCGTQTTIFLAGELRN---DSVLEYFLEAAMK-DFVIGRVEQTQWH 262 (281)
Q Consensus 201 a~d~iy~~--------------~~~~~ll~~l~~ll~~~g~~~l~~~~r~---~~~~~~fl~~~~~-~f~v~~i~~~~~~ 262 (281)
++-..-.. ..+..+++.+..+-+| .+++...... ...++.+++.+.+ |+.+...--...+
T Consensus 75 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~ 152 (333)
T 4h0n_A 75 MSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPST 152 (333)
T ss_dssp ECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTT
T ss_pred ecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHH
Confidence 85543221 1233344333322124 3444443332 3456677777764 7776544222111
Q ss_pred CCCCCCcEEEEEEE
Q 023543 263 PDYCSPRVVVYILV 276 (281)
Q Consensus 263 ~~~~~~~~~i~~~~ 276 (281)
=+..+.|-++|.+-
T Consensus 153 ~GvPQ~R~R~fiva 166 (333)
T 4h0n_A 153 VGVPNSRLRYYCTA 166 (333)
T ss_dssp TTCSCCCCEEEEEE
T ss_pred cCCCccceEEEEEE
Confidence 12234455555543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.013 Score=53.53 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=48.9
Q ss_pred CeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCc-----CCCCC
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL-----IQPLP 196 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~-----~~~~f 196 (281)
.+||||-||+|-+++.+...|.+ |.++|+ +.+++..+.|... ..+...|..+.....+ ..+.+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~----------~~~~~~DI~~~~~~~~~~~~~~~~~~ 72 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPR----------SLHVQEDVSLLNAEIIKGFFKNDMPI 72 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTT----------SEEECCCGGGCCHHHHHHHHCSCCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCC----------CceEecChhhcCHHHHHhhcccCCCe
Confidence 47999999999999999999998 679999 7888888877431 2223323222111111 24679
Q ss_pred cEEEEcccc
Q 023543 197 DYVLGSDVI 205 (281)
Q Consensus 197 D~Iia~d~i 205 (281)
|+|+++-..
T Consensus 73 D~i~ggpPC 81 (376)
T 3g7u_A 73 DGIIGGPPC 81 (376)
T ss_dssp CEEEECCCC
T ss_pred eEEEecCCC
Confidence 999986653
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0051 Score=68.75 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=45.2
Q ss_pred CCeEEEECCCcCHHHH-HHHHcC------CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 123 GKKIVELGSGCGLVGC-IAALLG------AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i-~~a~~g------~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
..+|||+|+|+|.... .+..++ .+++.||+ +...+.+++..... ++... .|.......+...
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~--------di~~~--~~d~~~~~~~~~~ 1310 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL--------HVTQG--QWDPANPAPGSLG 1310 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH--------TEEEE--CCCSSCCCC----
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc--------ccccc--cccccccccCCCC
Confidence 4599999999984422 222222 26999999 55566666554432 12211 1211111111235
Q ss_pred CCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 195 LPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.||+||++.+++........+..++++|+|+|.+++..
T Consensus 1311 ~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1311 KADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp -CCEEEEECC--------------------CCEEEEEE
T ss_pred ceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 69999999999888888889999999999999887754
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.098 Score=46.74 Aligned_cols=143 Identities=10% Similarity=0.060 Sum_probs=78.1
Q ss_pred CCeEEEECCCcCHHHHHHHHcCC--E-E-EEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 123 GKKIVELGSGCGLVGCIAALLGA--Q-V-ILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g~--~-V-~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.-+++||.||+|-+++.+...|. + | .++|+ +.+.+..+.|..... ..-|..+.....+....+|
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~~-----------~~~DI~~~~~~~i~~~~~D 78 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEEV-----------QVKNLDSISIKQIESLNCN 78 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCCC-----------BCCCTTTCCHHHHHHTCCC
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCCc-----------ccCChhhcCHHHhccCCCC
Confidence 34899999999999888888884 5 6 69999 788888888853321 1111111111112223689
Q ss_pred EEEEccccCCC------------CcHHHHHHHHHH-hhCC---CcEEEEEEeee---ChhHHHHHHHHHhc-CCeEEEEe
Q 023543 198 YVLGSDVIYSE------------GAVGDLLDTLLQ-LCGT---QTTIFLAGELR---NDSVLEYFLEAAMK-DFVIGRVE 257 (281)
Q Consensus 198 ~Iia~d~iy~~------------~~~~~ll~~l~~-ll~~---~g~~~l~~~~r---~~~~~~~fl~~~~~-~f~v~~i~ 257 (281)
+++++-..-.. +.-..|+..+.+ +++. ...+++..... ....++.+++.+.+ |+.+...-
T Consensus 79 il~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~v 158 (327)
T 3qv2_A 79 TWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDII 158 (327)
T ss_dssp EEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEE
Confidence 99985553221 122245555555 5532 23344443332 23456677777764 77765442
Q ss_pred cCCCCCCCCCCcEEEEEEE
Q 023543 258 QTQWHPDYCSPRVVVYILV 276 (281)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~ 276 (281)
-...+=+..+.|-++|.+-
T Consensus 159 l~a~~yGvPQ~R~R~fivg 177 (327)
T 3qv2_A 159 CSPIDIGIPNSRTRYYVMA 177 (327)
T ss_dssp ECGGGGTCSBCCCEEEEEE
T ss_pred EeHHHcCCCccceEEEEEE
Confidence 2211112233455555543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.15 Score=46.41 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=74.9
Q ss_pred CceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCc
Q 023543 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGS 175 (281)
Q Consensus 96 G~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~ 175 (281)
..+-|+++- +||.+++... ..+++||-+|.+.|.+++.++..+. ...+|---....++.|+..|++.. ..
T Consensus 18 ~l~a~da~d---~~ll~~~~~~---~~~~~~~~~~d~~gal~~~~~~~~~-~~~~ds~~~~~~~~~n~~~~~~~~---~~ 87 (375)
T 4dcm_A 18 PLQAWEAAD---EYLLQQLDDT---EIRGPVLILNDAFGALSCALAEHKP-YSIGDSYISELATRENLRLNGIDE---SS 87 (375)
T ss_dssp SCCSCCHHH---HHHHHTTTTC---CCCSCEEEECCSSSHHHHHTGGGCC-EEEESCHHHHHHHHHHHHHTTCCG---GG
T ss_pred CCCccchHH---HHHHHhhhhc---cCCCCEEEECCCCCHHHHhhccCCc-eEEEhHHHHHHHHHHHHHHcCCCc---cc
Confidence 355699886 5555543211 2457899999999998888876544 333564334567889999998761 23
Q ss_pred eEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHH---HHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 176 AVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVG---DLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 176 i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~---~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
+.+. +..+. ....||+|+. +.+.... ..+..+...+++++.+++....+.
T Consensus 88 ~~~~--~~~~~-----~~~~~~~v~~----~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~ 140 (375)
T 4dcm_A 88 VKFL--DSTAD-----YPQQPGVVLI----KVPKTLALLEQQLRALRKVVTSDTRIIAGAKARD 140 (375)
T ss_dssp SEEE--ETTSC-----CCSSCSEEEE----ECCSCHHHHHHHHHHHHTTCCTTSEEEEEEEGGG
T ss_pred eEec--ccccc-----cccCCCEEEE----EcCCCHHHHHHHHHHHHhhCCCCCEEEEEecccc
Confidence 4433 22111 2356898774 4445444 445555556689999988877654
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.028 Score=51.84 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=39.4
Q ss_pred cCCCeEEEECCCcCHHHHHHH-HcC---CEEEEEec-hhHHHHHHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAA-LLG---AQVILTDL-PDRLRLLKKNIEN 165 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a-~~g---~~V~~tD~-~~~l~~~~~N~~~ 165 (281)
.++..|+|+||+.|..++.++ +.+ .+|++.+. +...+.+++|+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 367899999999999999877 433 58999999 8999999999998
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.014 Score=52.17 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=41.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhh
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNL 167 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~ 167 (281)
.+|..|||--||+|..++++.++|.+.+++|+ +..++.+++++...+
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 47889999999999999999999999999999 778888888766543
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=95.46 E-value=0.03 Score=50.14 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=38.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIE 164 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~ 164 (281)
..+.+||||.||+|-+++.+...|.+ |.++|+ +.+++..+.|..
T Consensus 9 ~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~ 54 (327)
T 2c7p_A 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG 54 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred cCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC
Confidence 45679999999999999999999997 889999 788888888863
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.49 Score=41.67 Aligned_cols=136 Identities=14% Similarity=0.186 Sum_probs=74.3
Q ss_pred eEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 125 KIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
+||||-||+|-+++.+.+.|.+ |.++|+ +.+.+..+.|... .+..-|..+.....+ +.+|+++++
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~-----------~~~~~DI~~i~~~~~--~~~D~l~gg 68 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA-----------KLIKGDISKISSDEF--PKCDGIIGG 68 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCS-----------EEEESCGGGCCGGGS--CCCSEEECC
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC-----------CcccCChhhCCHhhC--CcccEEEec
Confidence 7999999999888888888998 789999 7788887777321 122222222111112 568999885
Q ss_pred cccCC----------CCcHHHHHHHHHHh---hCCCcEEEEEEee------eChhHHHHHHHHHhc-CCeEEEEecCCCC
Q 023543 203 DVIYS----------EGAVGDLLDTLLQL---CGTQTTIFLAGEL------RNDSVLEYFLEAAMK-DFVIGRVEQTQWH 262 (281)
Q Consensus 203 d~iy~----------~~~~~~ll~~l~~l---l~~~g~~~l~~~~------r~~~~~~~fl~~~~~-~f~v~~i~~~~~~ 262 (281)
-..-. .+.-..|+..+.++ ++|.- ++.... +....++.+++.+.. |+.+...--...+
T Consensus 69 pPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~--~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~ 146 (331)
T 3ubt_Y 69 PPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIF--FLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNAND 146 (331)
T ss_dssp CCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSE--EEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGG
T ss_pred CCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeE--EEeeeecccccccccchhhhhhhhhccCCcEEEEEeccccc
Confidence 44321 11112333333332 46642 233222 234566777777764 7765443211111
Q ss_pred CCCCCCcEEEEEE
Q 023543 263 PDYCSPRVVVYIL 275 (281)
Q Consensus 263 ~~~~~~~~~i~~~ 275 (281)
=+..+.|-++|.+
T Consensus 147 yGvPQ~R~Rvfiv 159 (331)
T 3ubt_Y 147 YGVAQDRKRVFYI 159 (331)
T ss_dssp TTCSBCCEEEEEE
T ss_pred CCCCcccceEEEE
Confidence 1223445565554
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.028 Score=50.07 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=45.9
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-h---hHHHHHHHHHHHhh
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-P---DRLRLLKKNIENNL 167 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~---~~l~~~~~N~~~n~ 167 (281)
...|.+++.... ..+|..|||--||+|..++++.++|.+.+++|+ + +.++.+++++...+
T Consensus 228 p~~l~~~~i~~~-----~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 228 PAAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp CHHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHh-----CCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 345556655431 247889999999999999999999999999999 7 77888888876654
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.12 Score=46.18 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=70.9
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcC----------CC------CCCceEEEEEec
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRH----------GD------LRGSAVVTELTW 183 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~----------~~------~~~~i~~~~l~w 183 (281)
..+.|+.||||......-+... +..++=+|.|++++.=++-+..++.. .. ...+......|.
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 3579999999999877777653 45788889888877666666554210 00 014566666665
Q ss_pred CCCC------CCCcCCCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 184 GDDP------DQDLIQPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 184 ~~~~------~~~~~~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
.+.. ..........++++-.++++ ++....+++.+.... |+|.+++....
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i 234 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPI 234 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence 4310 11111134577787666655 567889999999987 66666544443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.067 Score=48.19 Aligned_cols=94 Identities=22% Similarity=0.275 Sum_probs=59.7
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CC---Cc
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQ---DL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~---~~ 191 (281)
..+|.+||-+|||. |..++.+|+ .|+ +|+++|. ++.++.+++ .+.. ..++..+.. .. ..
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---------~vi~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT---------HVINSKTQDPVAAIKEI 254 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS---------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCC---------EEecCCccCHHHHHHHh
Confidence 35688999999875 666666665 688 7999998 667777653 2322 112221110 00 11
Q ss_pred CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.+.++|+|+-+--. ...++...++++++|++++..
T Consensus 255 ~~gg~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 255 TDGGVNFALESTGS------PEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp TTSCEEEEEECSCC------HHHHHHHHHTEEEEEEEEECC
T ss_pred cCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEeC
Confidence 22378988855332 466778888999999887654
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.11 Score=46.39 Aligned_cols=94 Identities=27% Similarity=0.392 Sum_probs=58.7
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc---
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL--- 191 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~--- 191 (281)
..+|.+||-+|+|. |..++.+|+ .|++|+++|. ++.++.+++ .+.. . .++..+..+. .+
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~-------~--~~~~~~~~~~~~~i~~~ 232 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGAD-------V--TLVVDPAKEEESSIIER 232 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS-------E--EEECCTTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC-------E--EEcCcccccHHHHHHHH
Confidence 35788999999864 555555555 7899999998 666776652 2322 1 1222210110 01
Q ss_pred C----CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 I----QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 ~----~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
. ..++|+|+-+--. ...++...++++++|++++..
T Consensus 233 ~~~~~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 233 IRSAIGDLPNVTIDCSGN------EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp HHHHSSSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECS
T ss_pred hccccCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 1 2579988865332 456777788999999987654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.85 E-value=0.06 Score=48.29 Aligned_cols=94 Identities=24% Similarity=0.342 Sum_probs=58.6
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCC--CCC---C-
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD--DPD---Q- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~--~~~---~- 189 (281)
..+|.+||-+|||. |..++.+|+ .|+ +|+++|. ++.++.+++ .+.. .+ ++... ..+ .
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~-------~v--i~~~~~~~~~~~~~i 235 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD-------LV--LQISKESPQEIARKV 235 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS-------EE--EECSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC-------EE--EcCcccccchHHHHH
Confidence 35788999999875 666666665 788 8999998 666776653 2322 11 22110 000 0
Q ss_pred -CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 190 -DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 190 -~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...+.++|+|+-+--. ...++...++++++|++++..
T Consensus 236 ~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 236 EGQLGCKPEVTIECTGA------EASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp HHHHTSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECS
T ss_pred HHHhCCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEe
Confidence 0112568988865332 456777788999999987654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.053 Score=48.20 Aligned_cols=94 Identities=22% Similarity=0.174 Sum_probs=60.0
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-CCc--CC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-QDL--IQ 193 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~~~--~~ 193 (281)
..+|.+||=.|||. |..++.+|+ .|++|+++|. ++.++.+++ .+.. ..++..+... ..+ ..
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---------~~i~~~~~~~~~~~~~~~ 230 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGAE---------VAVNARDTDPAAWLQKEI 230 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCC---------EEEeCCCcCHHHHHHHhC
Confidence 35788999999975 777776665 7899999999 666776653 3322 1223221100 000 11
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
..+|+|+-+-.- ...++...++++++|++++..
T Consensus 231 g~~d~vid~~g~------~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 231 GGAHGVLVTAVS------PKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp SSEEEEEESSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCEEEEeCCC------HHHHHHHHHHhccCCEEEEeC
Confidence 367888755332 567788888999999887653
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.093 Score=47.37 Aligned_cols=94 Identities=21% Similarity=0.286 Sum_probs=59.5
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC--C--CC-
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP--D--QD- 190 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~--~--~~- 190 (281)
..+|.+||=+|+|. |..++.+|+ .|+ +|+++|. ++.++++++ .+.. ..++..+.. + ..
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---------~vi~~~~~~~~~~i~~~ 246 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT---------ATVDPSAGDVVEAIAGP 246 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS---------EEECTTSSCHHHHHHST
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC---------EEECCCCcCHHHHHHhh
Confidence 35788999999864 666665665 688 8999999 666776654 3332 112211110 0 00
Q ss_pred --cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 --LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 --~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+.+..+|+|+-+--. ...++...++++++|++++..
T Consensus 247 ~~~~~gg~Dvvid~~G~------~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 247 VGLVPGGVDVVIECAGV------AETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp TSSSTTCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred hhccCCCCCEEEECCCC------HHHHHHHHHHhccCCEEEEEe
Confidence 233478988864322 557788888999999987764
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.033 Score=50.08 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=60.3
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEe------cCCCCCC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELT------WGDDPDQ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~------w~~~~~~ 189 (281)
..+|.+||=+|+|. |..++.+|+ .|++ |+++|. ++.++.+++. ... .+. ...+ |.+....
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~--------~~~-~~~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE--------VVT-HKVERLSAEESAKKIVE 246 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT--------CEE-EECCSCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh--------ccc-ccccccchHHHHHHHHH
Confidence 35788999999865 666666665 6887 999998 7778877754 111 111 1111 1000000
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
......+|+|+-+--- +..++...++++++|++++...
T Consensus 247 ~t~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 247 SFGGIEPAVALECTGV------ESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp HTSSCCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECCC
T ss_pred HhCCCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEcc
Confidence 0113579988865332 4567788889999999877643
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.058 Score=48.76 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=35.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHH
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNI 163 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~ 163 (281)
++..|||+|.|.|.++..++.. +.+|+++++ +..+..++...
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~ 102 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF 102 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence 4689999999999999988875 568999999 77788887765
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.25 Score=44.40 Aligned_cols=94 Identities=16% Similarity=0.102 Sum_probs=58.9
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-CC--C---
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-PD--Q--- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~~--~--- 189 (281)
..+|.+||=+|+|. |..++.+|+ .|+ +|+++|. ++.++.+++ .+.. ..++..+. .+ .
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---------~vi~~~~~~~~~~~~i~ 255 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---------ECLNPKDYDKPIYEVIC 255 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---------EEECGGGCSSCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---------EEEecccccchHHHHHH
Confidence 35688999999874 666666665 688 8999998 667777653 2322 11222210 00 0
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCC-cEEEEEE
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQ-TTIFLAG 232 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~-g~~~l~~ 232 (281)
...+..+|+|+-+--. ...++...++++++ |++++..
T Consensus 256 ~~t~gg~Dvvid~~g~------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 256 EKTNGGVDYAVECAGR------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp HHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred HHhCCCCCEEEECCCC------HHHHHHHHHHHhcCCCEEEEEc
Confidence 1123478988854322 45677888899999 9877654
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.072 Score=45.42 Aligned_cols=145 Identities=13% Similarity=-0.038 Sum_probs=78.5
Q ss_pred CcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCC
Q 023543 94 VTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHG 170 (281)
Q Consensus 94 ~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~ 170 (281)
++|...=.++..|.+-..+. ...++.+||||||++|-.+-.++. .|+ +|+++|+ ..--+.= ..++..+.
T Consensus 55 ~~g~yrSRa~~KL~ei~ek~-----~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gw-- 126 (267)
T 3p8z_A 55 TTHHAVSRGSAKLQWFVERN-----MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGW-- 126 (267)
T ss_dssp CSSCCSSTHHHHHHHHHHTT-----SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTT--
T ss_pred cCCCccchHHHHHHHHHHhc-----CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCc--
Confidence 34555556677777666543 245778999999999999987665 566 4999999 3221000 00001111
Q ss_pred CCCCceEEEEE-ecCCCCCCCcCCCCCcEEEEccccCCCCc----H---HHHHHHHHHhhCCCcEEEEEEeeeChhHHHH
Q 023543 171 DLRGSAVVTEL-TWGDDPDQDLIQPLPDYVLGSDVIYSEGA----V---GDLLDTLLQLCGTQTTIFLAGELRNDSVLEY 242 (281)
Q Consensus 171 ~~~~~i~~~~l-~w~~~~~~~~~~~~fD~Iia~d~iy~~~~----~---~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~ 242 (281)
+.+.+... |. ..+...++|.|+| |+--.... . -.+++.+.+.|++ +.+++-.-.-+...+..
T Consensus 127 ---n~v~fk~gvDv-----~~~~~~~~Dtllc-DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e 196 (267)
T 3p8z_A 127 ---NIVKLMSGKDV-----FYLPPEKCDTLLC-DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIE 196 (267)
T ss_dssp ---TSEEEECSCCG-----GGCCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHH
T ss_pred ---CceEEEeccce-----eecCCccccEEEE-ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHH
Confidence 23444442 21 1233467998875 33322211 1 1155555677888 55443211122222345
Q ss_pred HHHHHhcCCeEEEE
Q 023543 243 FLEAAMKDFVIGRV 256 (281)
Q Consensus 243 fl~~~~~~f~v~~i 256 (281)
+++.++..|.-..+
T Consensus 197 ~l~~lq~~fgg~lV 210 (267)
T 3p8z_A 197 HLERLQRKHGGMLV 210 (267)
T ss_dssp HHHHHHHHHCCEEE
T ss_pred HHHHHHHHhCCEeE
Confidence 88888876665444
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.087 Score=47.46 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=58.9
Q ss_pred CCCeEEEEC-CCc-CHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC---CcCC
Q 023543 122 HGKKIVELG-SGC-GLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ---DLIQ 193 (281)
Q Consensus 122 ~~~~VLELG-cGt-G~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~---~~~~ 193 (281)
+|.+||=.| +|. |..++.+|+. |++|+++|. ++.++.+++ .+.. ..++..+.... ....
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---------~vi~~~~~~~~~v~~~~~ 237 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---------HVIDHSKPLAAEVAALGL 237 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---------EEECTTSCHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---------EEEeCCCCHHHHHHHhcC
Confidence 578999999 664 7777777773 789999999 666777653 3322 11222211100 1123
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
..+|+|+-+-- -...++.+.++++++|++++.
T Consensus 238 ~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 238 GAPAFVFSTTH------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp CCEEEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred CCceEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence 57888776433 256778888999999998765
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.036 Score=50.19 Aligned_cols=93 Identities=22% Similarity=0.204 Sum_probs=55.0
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CCCcCCCC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~~~~~~~ 195 (281)
..+|.+||-+|+|. |..++.+|+ .|++|+++|. ++.++.+++ .+.. ..++..+.. ...+. .+
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~----lGa~---------~vi~~~~~~~~~~~~-~g 257 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGAD---------EVVNSRNADEMAAHL-KS 257 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCS---------EEEETTCHHHHHTTT-TC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCc---------EEeccccHHHHHHhh-cC
Confidence 35688999999874 666665565 7899999998 677777663 2322 112211100 00111 46
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+-+-- ... .++...++++++|++++..
T Consensus 258 ~Dvvid~~g--~~~----~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 258 FDFILNTVA--APH----NLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp EEEEEECCS--SCC----CHHHHHTTEEEEEEEEECC
T ss_pred CCEEEECCC--CHH----HHHHHHHHhccCCEEEEec
Confidence 898875432 222 3445566788888876543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.32 Score=43.63 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=58.7
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-CC--C---
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-PD--Q--- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~~--~--- 189 (281)
..+|.+||=+|+|. |..++.+|+ .|+ +|+++|. ++.++.+++ .+.. ..++..+. .+ .
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---------~vi~~~~~~~~~~~~v~ 254 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT---------ECINPQDFSKPIQEVLI 254 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS---------EEECGGGCSSCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---------eEeccccccccHHHHHH
Confidence 35688999999864 555555555 688 8999998 677777653 2322 11222210 00 0
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCC-cEEEEEE
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQ-TTIFLAG 232 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~-g~~~l~~ 232 (281)
...+..+|+|+-+--. ...++...++++++ |++++..
T Consensus 255 ~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 255 EMTDGGVDYSFECIGN------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp HHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HHhCCCCCEEEECCCc------HHHHHHHHHhhccCCcEEEEEe
Confidence 1122478988855332 45677888899999 9877654
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.27 Score=44.17 Aligned_cols=94 Identities=22% Similarity=0.273 Sum_probs=58.7
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-CC--C---
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-PD--Q--- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~~--~--- 189 (281)
..+|.+||-+|+|. |..++.+|+ .|+ +|+++|. ++.++.+++ .+.. ..++..+. .+ .
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---------~vi~~~~~~~~~~~~~~ 256 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---------DFVNPNDHSEPISQVLS 256 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---------EEECGGGCSSCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---------eEEeccccchhHHHHHH
Confidence 35688999999864 666666665 688 8999998 677777653 2322 11222210 00 0
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCC-cEEEEEE
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQ-TTIFLAG 232 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~-g~~~l~~ 232 (281)
...+..+|+|+-+--. ...++...++++++ |++++..
T Consensus 257 ~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 257 KMTNGGVDFSLECVGN------VGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp HHHTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HHhCCCCCEEEECCCC------HHHHHHHHHHhhcCCcEEEEEc
Confidence 1122478988854332 45678888899999 9877653
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.01 E-value=0.38 Score=43.24 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=58.3
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-CC--C---
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-PD--Q--- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~~--~--- 189 (281)
..+|.+||=+|+|. |...+.+|+ .|+ +|+++|. ++.++.+++ .+.. ..++..+. .+ .
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---------~vi~~~~~~~~~~~~~~ 255 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT---------ECVNPQDYKKPIQEVLT 255 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---------EEECGGGCSSCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---------eEecccccchhHHHHHH
Confidence 35688999999864 555555555 688 8999998 677776653 2322 11222210 00 0
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCC-cEEEEEE
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQ-TTIFLAG 232 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~-g~~~l~~ 232 (281)
...+..+|+|+-+--. ...++...++++++ |++++..
T Consensus 256 ~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 256 EMSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp HHTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEECS
T ss_pred HHhCCCCcEEEECCCC------HHHHHHHHHHhhcCCcEEEEec
Confidence 1123478988855332 45677788899999 9877653
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.24 Score=44.67 Aligned_cols=94 Identities=23% Similarity=0.246 Sum_probs=59.0
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCC-CCCC-----
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD-DPDQ----- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~-~~~~----- 189 (281)
..+|.+||=+|+|. |+.++.+|+ .|+ +|+++|. ++.++.+++ .+.. ..++..+ ..+.
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---------~vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN---------EFVNPKDHDKPIQEVIV 257 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC---------EEECGGGCSSCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---------EEEccccCchhHHHHHH
Confidence 35688999999874 666666665 688 7999998 777776652 2322 1222211 0010
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCC-cEEEEEE
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQ-TTIFLAG 232 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~-g~~~l~~ 232 (281)
.+.+..+|+|+-+--- ...++...++++++ |++++..
T Consensus 258 ~~~~gg~D~vid~~g~------~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 258 DLTDGGVDYSFECIGN------VSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp HHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HhcCCCCCEEEECCCC------HHHHHHHHHHhhccCCEEEEEc
Confidence 1223479988865332 56778888899996 8877654
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.32 Score=43.70 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=58.2
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-CC--C---
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-PD--Q--- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~~--~--- 189 (281)
..+|.+||=+|+|. |..++.+|+ .|+ +|+++|. ++.++.+++ .+.. ..++..+. .+ .
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---------~vi~~~~~~~~~~~~v~ 259 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---------DCLNPRELDKPVQDVIT 259 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---------EEECGGGCSSCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---------EEEccccccchHHHHHH
Confidence 35688999999864 666666665 688 8999998 666776653 2322 11222210 00 0
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCC-cEEEEEE
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQ-TTIFLAG 232 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~-g~~~l~~ 232 (281)
...+..+|+|+-+--- ...++...++++++ |++++..
T Consensus 260 ~~~~~g~Dvvid~~G~------~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 260 ELTAGGVDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp HHHTSCBSEEEESSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred HHhCCCccEEEECCCC------HHHHHHHHHHhhcCCCEEEEEC
Confidence 0122478988854332 45677888899999 9877643
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.05 Score=48.51 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=57.3
Q ss_pred CCCeEEEECCCc-CHHHHHHHH-c--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCC-C-CCCCcC-C
Q 023543 122 HGKKIVELGSGC-GLVGCIAAL-L--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD-D-PDQDLI-Q 193 (281)
Q Consensus 122 ~~~~VLELGcGt-G~~~i~~a~-~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~-~-~~~~~~-~ 193 (281)
+|.+||-+|+|. |..++.+|+ . |++|+++|. ++.++.+++ .+.. . .++..+ . ....+. .
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~-----~----vi~~~~~~~~~~~~~~g 236 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGAD-----Y----VSEMKDAESLINKLTDG 236 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCS-----E----EECHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCC-----E----EeccccchHHHHHhhcC
Confidence 789999999964 566665665 6 899999998 666776653 2322 1 111111 0 000112 2
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.++|+|+-+--. +..++...++++++|++++..
T Consensus 237 ~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 237 LGASIAIDLVGT------EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp CCEEEEEESSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCccEEEECCCC------hHHHHHHHHHhhcCCEEEEeC
Confidence 378988865432 446777788899999876653
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.09 Score=46.91 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=55.4
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..+|.+||=+|+|. |..++.+|+ .|++|+++|. ++.++.+++ .+.. .+ . .+. ..+ ...+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~-----~v--~----~~~--~~~-~~~~ 235 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGVK-----HF--Y----TDP--KQC-KEEL 235 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTCS-----EE--E----SSG--GGC-CSCE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCCC-----ee--c----CCH--HHH-hcCC
Confidence 45789999999875 666666665 7899999998 666776653 3322 11 1 111 111 2278
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+-+-- ... .++...++++++|++++..
T Consensus 236 D~vid~~g--~~~----~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 236 DFIISTIP--THY----DLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp EEEEECCC--SCC----CHHHHHTTEEEEEEEEECC
T ss_pred CEEEECCC--cHH----HHHHHHHHHhcCCEEEEEC
Confidence 98875322 222 3555667888999877664
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.011 Score=53.14 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=56.5
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CC---Cc
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQ---DL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~---~~ 191 (281)
..+|.+||=+|+|. |..++.+|+ .|+ +|+++|. ++.++.+++ .+.. ..++..+.. .. ..
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---------~vi~~~~~~~~~~v~~~ 230 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGAT---------DIINYKNGDIVEQILKA 230 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCC---------EEECGGGSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---------eEEcCCCcCHHHHHHHH
Confidence 35788999999875 666666666 688 7999999 666777654 2322 112211110 00 01
Q ss_pred -CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 192 -IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 192 -~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
....+|+|+-+-- . +..++...++++++|++++.
T Consensus 231 t~g~g~D~v~d~~g--~----~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 231 TDGKGVDKVVIAGG--D----VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp TTTCCEEEEEECSS--C----TTHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCCCEEEECCC--C----hHHHHHHHHHHhcCCEEEEe
Confidence 1246898885322 2 34667777888999987654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.3 Score=43.17 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=69.9
Q ss_pred CeEEEECCCcCHHHHHHHH-cCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-----cCCCCCc
Q 023543 124 KKIVELGSGCGLVGCIAAL-LGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-----LIQPLPD 197 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~-~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-----~~~~~fD 197 (281)
+.||+||||.=.-+.-+.. .+.+|+=+|.|+++..-++-+..++.. ...+..+...|..+..... +.....=
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~--~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVT--PTADRREVPIDLRQDWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCC--CSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCC--CCCCeEEEecchHhhHHHHHHhccCCCCCCE
Confidence 5799999996544333332 245799999999988888887765432 1245666666654310001 1112234
Q ss_pred EEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 198 YVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 198 ~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
++++-.++++ ++....+++.+..++.+|+.+++.....
T Consensus 182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 6666666554 4567889999999888998887776543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.02 Score=51.12 Aligned_cols=93 Identities=13% Similarity=-0.013 Sum_probs=55.9
Q ss_pred ccCCCeEEEECCCc--CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CC---Cc
Q 023543 120 LLHGKKIVELGSGC--GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQ---DL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGt--G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~---~~ 191 (281)
..+|++||=.|||+ |...+.+++ .|++|+++|. ++.++.+++ .+.. ..++..+.. .. ..
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lga~---------~~~~~~~~~~~~~~~~~ 208 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR----LGAA---------YVIDTSTAPLYETVMEL 208 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCS---------EEEETTTSCHHHHHHHH
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----CCCc---------EEEeCCcccHHHHHHHH
Confidence 45789999999974 555555554 7999999998 666777764 2322 112221110 00 01
Q ss_pred -CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 -IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 -~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
....+|+|+-+--- ..+...+ ++++++|++++..
T Consensus 209 ~~~~g~Dvvid~~g~------~~~~~~~-~~l~~~G~iv~~G 243 (340)
T 3gms_A 209 TNGIGADAAIDSIGG------PDGNELA-FSLRPNGHFLTIG 243 (340)
T ss_dssp TTTSCEEEEEESSCH------HHHHHHH-HTEEEEEEEEECC
T ss_pred hCCCCCcEEEECCCC------hhHHHHH-HHhcCCCEEEEEe
Confidence 12478988764332 3344444 7899999987664
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.2 Score=44.66 Aligned_cols=91 Identities=22% Similarity=0.210 Sum_probs=55.8
Q ss_pred CCCeEEEEC-CCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC---CcCCC
Q 023543 122 HGKKIVELG-SGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ---DLIQP 194 (281)
Q Consensus 122 ~~~~VLELG-cGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~---~~~~~ 194 (281)
+|.+||=.| +|. |..++.+++ .|++|+++|. ++.++.+++ .+.. ..++..+.... .....
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---------~vi~~~~~~~~~~~~~~~~ 216 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK----MGAD---------IVLNHKESLLNQFKTQGIE 216 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH----HTCS---------EEECTTSCHHHHHHHHTCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc---------EEEECCccHHHHHHHhCCC
Confidence 688999995 543 555555554 6899999999 777777764 2322 11222111000 11234
Q ss_pred CCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 195 LPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
.+|+|+-+-- -...++.+.++++++|+++..
T Consensus 217 g~Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 217 LVDYVFCTFN------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp CEEEEEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred CccEEEECCC------chHHHHHHHHHhccCCEEEEE
Confidence 6898886432 255677888899999987543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.22 Score=44.23 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=57.0
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CCC---cC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQD---LI 192 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~~---~~ 192 (281)
..+|++||-+|+|. |...+.+++ .|++|+++|. ++.++.+++ .+.. ..++..+.. ... ..
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---------~~~d~~~~~~~~~~~~~~ 228 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---------LVVNPLKEDAAKFMKEKV 228 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---------EEECTTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC---------EEecCCCccHHHHHHHHh
Confidence 35688999999964 555555554 7899999998 666776642 2322 112322110 000 11
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
..+|+|+-+--. ...++...++++++|++++..
T Consensus 229 -~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 229 -GGVHAAVVTAVS------KPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp -SSEEEEEESSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred -CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEec
Confidence 468988865432 456777788899999876553
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.21 Score=44.50 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=56.6
Q ss_pred ccCCCeEEEECCC--cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--C---
Q 023543 120 LLHGKKIVELGSG--CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--D--- 190 (281)
Q Consensus 120 ~~~~~~VLELGcG--tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~--- 190 (281)
..+|++||-.|++ .|...+.+++ .|++|+++|. ++.++.+++ .+.. ..++..+..+. .
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~~---------~~~d~~~~~~~~~~~~~ 233 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGGE---------VFIDFTKEKDIVGAVLK 233 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTCC---------EEEETTTCSCHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCCc---------eEEecCccHhHHHHHHH
Confidence 3578999999983 3554444444 7899999998 666665543 2221 12343321110 0
Q ss_pred cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 ~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
..+..+|+|+.+--. ...++...++++++|++++..
T Consensus 234 ~~~~~~D~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 234 ATDGGAHGVINVSVS------EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp HHTSCEEEEEECSSC------HHHHHHHTTSEEEEEEEEECC
T ss_pred HhCCCCCEEEECCCc------HHHHHHHHHHHhcCCEEEEEe
Confidence 111268988865432 456777778889999876553
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.095 Score=47.89 Aligned_cols=98 Identities=19% Similarity=0.183 Sum_probs=55.0
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CC---Cc
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQ---DL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~---~~ 191 (281)
..+|.+||=+|+|. |..++.+|+ .|+ +|+++|. ++.++++++ .+.. ..++..+.. .. ..
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---------~vi~~~~~~~~~~i~~~ 277 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE----LGAD---------HVIDPTKENFVEAVLDY 277 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS---------EEECTTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC---------EEEcCCCCCHHHHHHHH
Confidence 45788999999864 566665565 688 8999998 667777753 2322 112211110 00 01
Q ss_pred -CCCCCcEEEEccccCCC-CcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 -IQPLPDYVLGSDVIYSE-GAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 -~~~~fD~Iia~d~iy~~-~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
....+|+|+-+-- .. .....+++.+.+.++++|++++..
T Consensus 278 t~g~g~D~vid~~g--~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 278 TNGLGAKLFLEATG--VPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp TTTCCCSEEEECSS--CHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred hCCCCCCEEEECCC--CcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 1347998885422 11 122333333334449999987764
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.20 E-value=0.028 Score=51.07 Aligned_cols=93 Identities=27% Similarity=0.330 Sum_probs=55.8
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCC--CCC--C---
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD--DPD--Q--- 189 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~--~~~--~--- 189 (281)
.+|.+||=+|+|. |..++.+|+ .| ++|+++|. ++.++.+++ .+.. ..++... ..+ .
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---------~vi~~~~~~~~~~~~~v~ 260 (380)
T 1vj0_A 194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---------LTLNRRETSVEERRKAIM 260 (380)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---------EEEETTTSCHHHHHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc---------EEEeccccCcchHHHHHH
Confidence 4688999999764 666666665 68 59999998 666776652 2322 1122210 000 0
Q ss_pred CcC-CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 190 DLI-QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 190 ~~~-~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
... ...+|+|+-+--. ...++...++++++|++++..
T Consensus 261 ~~~~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 261 DITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp HHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred HHhCCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 011 2368988854321 235666778889999877654
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.046 Score=48.75 Aligned_cols=94 Identities=27% Similarity=0.260 Sum_probs=59.2
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-c-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC---c-
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-L-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD---L- 191 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~---~- 191 (281)
..+|.+||=+|+|. |..++.+|+ . +++|+++|. ++.++.+++ .+.. .+ ++..+..... .
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~-------~~--i~~~~~~~~~v~~~t 235 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD-------AA--VKSGAGAADAIRELT 235 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS-------EE--EECSTTHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC-------EE--EcCCCcHHHHHHHHh
Confidence 45788999999875 666666665 4 679999999 666776653 3322 11 2211110000 1
Q ss_pred CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
....+|+|+-+--- +..++...++++++|++++..
T Consensus 236 ~g~g~d~v~d~~G~------~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 236 GGQGATAVFDFVGA------QSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp GGGCEEEEEESSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCCeEEEECCCC------HHHHHHHHHHHhcCCEEEEEC
Confidence 12378988764332 557788888999999887654
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.036 Score=49.58 Aligned_cols=92 Identities=26% Similarity=0.226 Sum_probs=56.3
Q ss_pred CCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CC---CcC-
Q 023543 122 HGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQ---DLI- 192 (281)
Q Consensus 122 ~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~---~~~- 192 (281)
+|.+||-+|+|. |...+.+|+ .|+ +|+++|. ++.++.+++ .+.. ..++..+.. .. ...
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga~---------~~~~~~~~~~~~~v~~~~~ 233 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGAD---------YVINPFEEDVVKEVMDITD 233 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTCS---------EEECTTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---------EEECCCCcCHHHHHHHHcC
Confidence 889999999953 555555554 688 8999999 666666653 2222 112221110 00 011
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...+|+|+-+--. ...++...++++++|++++..
T Consensus 234 g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 234 GNGVDVFLEFSGA------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp TSCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence 2368988865432 456777788889999876654
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=91.68 E-value=0.028 Score=45.79 Aligned_cols=93 Identities=16% Similarity=0.082 Sum_probs=54.0
Q ss_pred ccCCCeEEEECCCc--CHHHHHHH-HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-C----C
Q 023543 120 LLHGKKIVELGSGC--GLVGCIAA-LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-Q----D 190 (281)
Q Consensus 120 ~~~~~~VLELGcGt--G~~~i~~a-~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~----~ 190 (281)
..+|++||-.|++. |...+.++ ..|++|+++|. ++.++.+++ .+.. ..++..+... . .
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~~---------~~~d~~~~~~~~~~~~~ 102 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---------YVGDSRSVDFADEILEL 102 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---------EEEETTCSTHHHHHHHH
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---------EEeeCCcHHHHHHHHHH
Confidence 35789999999533 43333333 36899999999 565555432 2211 1123322110 0 0
Q ss_pred cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 ~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.....+|+++.+-- ...++...++++++|++++..
T Consensus 103 ~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 103 TDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp TTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred hCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEc
Confidence 11246898886532 245677788899999877654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.25 Score=43.92 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=56.5
Q ss_pred ccCCCeEEEECCCc--CHHHHHHHH-c-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC----CC
Q 023543 120 LLHGKKIVELGSGC--GLVGCIAAL-L-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD----QD 190 (281)
Q Consensus 120 ~~~~~~VLELGcGt--G~~~i~~a~-~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~----~~ 190 (281)
..++++||-.|+|. |...+.+++ . |++|+++|. ++.++.+++ .+.. ..++..+... ..
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~----~g~~---------~~~~~~~~~~~~~~~~ 234 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD---------YVINASMQDPLAEIRR 234 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS---------EEEETTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC---------EEecCCCccHHHHHHH
Confidence 35789999999984 444444443 6 999999998 666666643 2221 1123222110 01
Q ss_pred cCC-CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 LIQ-PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 ~~~-~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
... ..+|+|+.+--- ...++...++++++|++++..
T Consensus 235 ~~~~~~~d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 235 ITESKGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp HTTTSCEEEEEESCCC------HHHHTTGGGGEEEEEEEEECC
T ss_pred HhcCCCceEEEECCCC------HHHHHHHHHHHhcCCEEEEEC
Confidence 122 478988865432 446677778889999877654
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.68 Score=40.49 Aligned_cols=88 Identities=18% Similarity=0.143 Sum_probs=54.9
Q ss_pred eEEEECC-C-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CCCcCCCCCcEE
Q 023543 125 KIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQDLIQPLPDYV 199 (281)
Q Consensus 125 ~VLELGc-G-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~~~~~~~fD~I 199 (281)
+||=.|+ | .|..++.+|+ .|++|+++|. ++.++.+++ .+.. .+ ++..+.. ...+.+..+|+|
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~-------~v--i~~~~~~~~~~~~~~~~d~v 215 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS----LGAN-------RI--LSRDEFAESRPLEKQLWAGA 215 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH----HTCS-------EE--EEGGGSSCCCSSCCCCEEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCC-------EE--EecCCHHHHHhhcCCCccEE
Confidence 4999997 4 3666666665 7899999998 777777764 2322 11 1211111 112234578877
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+-+-- .+.++...++++++|++++..
T Consensus 216 ~d~~g-------~~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 216 IDTVG-------DKVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp EESSC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred EECCC-------cHHHHHHHHHHhcCCEEEEEe
Confidence 75321 237778888999999987664
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=0.53 Score=41.63 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=55.7
Q ss_pred ccCCCeEEEECC-C-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----C
Q 023543 120 LLHGKKIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-----D 190 (281)
Q Consensus 120 ~~~~~~VLELGc-G-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-----~ 190 (281)
..+|++||-.|| | .|...+.+++ .|++|+++|. ++.++.+++. .+.. ..++..+..+. .
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~~---------~~~d~~~~~~~~~~~~~ 220 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGFD---------DAFNYKEESDLTAALKR 220 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCCS---------EEEETTSCSCSHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCc---------eEEecCCHHHHHHHHHH
Confidence 357899999997 3 3555554444 7899999998 6666665421 1221 12233221110 0
Q ss_pred cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 ~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.....+|+|+.+-- ...++...++++++|++++..
T Consensus 221 ~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 221 CFPNGIDIYFENVG-------GKMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp HCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred HhCCCCcEEEECCC-------HHHHHHHHHHHhcCCEEEEEc
Confidence 11246898876532 136677778889999877653
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=90.46 E-value=0.72 Score=41.27 Aligned_cols=93 Identities=20% Similarity=0.230 Sum_probs=57.0
Q ss_pred ccCCCeEEEECC-C-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CC---Cc
Q 023543 120 LLHGKKIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQ---DL 191 (281)
Q Consensus 120 ~~~~~~VLELGc-G-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~---~~ 191 (281)
..+|++||=.|+ | .|...+.+++ .|++|+++|. ++.++.+++ .+.. ..++..+.. .. ..
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~---------~~~~~~~~~~~~~~~~~ 227 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCD---------RPINYKTEPVGTVLKQE 227 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCc---------EEEecCChhHHHHHHHh
Confidence 356889999993 4 3666666555 7899999999 666666653 2322 112222110 00 01
Q ss_pred CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
....+|+|+-+-- ...++.+.++++++|++++..
T Consensus 228 ~~~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 228 YPEGVDVVYESVG-------GAMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp CTTCEEEEEECSC-------THHHHHHHHHEEEEEEEEECC
T ss_pred cCCCCCEEEECCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence 2346898886533 146677778889999877654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.04 E-value=0.55 Score=41.17 Aligned_cols=93 Identities=15% Similarity=0.018 Sum_probs=54.4
Q ss_pred ccCCCeEEEEC-CCc-CHHHHHHHH-cCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 120 LLHGKKIVELG-SGC-GLVGCIAAL-LGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELG-cGt-G~~~i~~a~-~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..+|.+||=+| +|. |..++.+|+ .|++|++++.++.++.+++ .+.. ..++..+.....-.-..+
T Consensus 150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~----lGa~---------~~i~~~~~~~~~~~~~g~ 216 (321)
T 3tqh_A 150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKA----LGAE---------QCINYHEEDFLLAISTPV 216 (321)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH----HTCS---------EEEETTTSCHHHHCCSCE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHH----cCCC---------EEEeCCCcchhhhhccCC
Confidence 45789999997 554 666666665 7899999987444555543 3432 122322211000011468
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+-+-- -+.+ ....++++++|+++...
T Consensus 217 D~v~d~~g------~~~~-~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 217 DAVIDLVG------GDVG-IQSIDCLKETGCIVSVP 245 (321)
T ss_dssp EEEEESSC------HHHH-HHHGGGEEEEEEEEECC
T ss_pred CEEEECCC------cHHH-HHHHHhccCCCEEEEeC
Confidence 87775422 2333 67778889999877653
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.80 E-value=0.17 Score=44.93 Aligned_cols=96 Identities=21% Similarity=0.339 Sum_probs=58.7
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC----Cc
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ----DL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~----~~ 191 (281)
..+|.+||=.|+|. |..++.+|+ .|++ ++++|. ++.++++++ .+.. ..++..+.... .+
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~---------~~i~~~~~~~~~~~~~~ 224 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM---------QTFNSSEMSAPQMQSVL 224 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---------EEEETTTSCHHHHHHHH
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe---------EEEeCCCCCHHHHHHhh
Confidence 35789999999875 555555555 6764 789998 666776653 3332 12222221100 01
Q ss_pred -CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 192 -IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 192 -~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
....+|+|+-+--. ...++...++++++|.+.+....
T Consensus 225 ~~~~g~d~v~d~~G~------~~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 225 RELRFNQLILETAGV------PQTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp GGGCSSEEEEECSCS------HHHHHHHHHHCCTTCEEEECCCC
T ss_pred cccCCcccccccccc------cchhhhhhheecCCeEEEEEecc
Confidence 12457877754332 56777888899999998776543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.25 Score=44.38 Aligned_cols=92 Identities=24% Similarity=0.214 Sum_probs=50.8
Q ss_pred CCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-CCcCCCCCc
Q 023543 122 HGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-QDLIQPLPD 197 (281)
Q Consensus 122 ~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~~~~~~~fD 197 (281)
+|.+||=+|+|. |...+.+|+ .|++|+++|. ++.++.+++ ..+.. ..++..+... .... ..+|
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~lGa~---------~v~~~~~~~~~~~~~-~~~D 253 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALK---NFGAD---------SFLVSRDQEQMQAAA-GTLD 253 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHH---TSCCS---------EEEETTCHHHHHHTT-TCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hcCCc---------eEEeccCHHHHHHhh-CCCC
Confidence 788999999753 444444444 6899999998 666665542 22221 1122221100 0011 3689
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+-+--. .. .++...++++++|+++...
T Consensus 254 ~vid~~g~--~~----~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 254 GIIDTVSA--VH----PLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp EEEECCSS--CC----CSHHHHHHEEEEEEEEECC
T ss_pred EEEECCCc--HH----HHHHHHHHHhcCCEEEEEc
Confidence 88854321 11 2334456778888876543
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=88.72 E-value=0.15 Score=45.17 Aligned_cols=94 Identities=20% Similarity=0.172 Sum_probs=54.3
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-c-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-C---Cc
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-L-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-Q---DL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~---~~ 191 (281)
..+|.+||=+|+|. |..++.+++ . |++|+++|. ++.++++++ .+.. ..++..+... . ..
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~---------~~i~~~~~~~~~~v~~~ 227 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGAD---------VTINSGDVNPVDEIKKI 227 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCS---------EEEEC-CCCHHHHHHHH
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCe---------EEEeCCCCCHHHHhhhh
Confidence 35788999999986 444444443 3 679999999 665665542 2322 1122221110 0 01
Q ss_pred -CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 -IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 -~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
....+|+++-+-.- ...+....++++++|.+++..
T Consensus 228 t~g~g~d~~~~~~~~------~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 228 TGGLGVQSAIVCAVA------RIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp TTSSCEEEEEECCSC------HHHHHHHHHTEEEEEEEEECC
T ss_pred cCCCCceEEEEeccC------cchhheeheeecCCceEEEEe
Confidence 12346666554332 566777788899999876654
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=88.71 E-value=0.024 Score=50.61 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=55.2
Q ss_pred CCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CCC---cCC
Q 023543 122 HGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQD---LIQ 193 (281)
Q Consensus 122 ~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~~---~~~ 193 (281)
+|.+||-+|+|. |...+.+|+ .|+ +|+++|. ++.++.+++- . . ..++..+.. ... ...
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l--a---~---------~v~~~~~~~~~~~~~~~~~ 229 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY--A---D---------RLVNPLEEDLLEVVRRVTG 229 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT--C---S---------EEECTTTSCHHHHHHHHHS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--H---H---------hccCcCccCHHHHHHHhcC
Confidence 889999999853 555555555 688 8999998 5556555431 1 1 112221110 000 113
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
..+|+|+-+--. ...++...++++++|++++..
T Consensus 230 ~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 230 SGVEVLLEFSGN------EAAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp SCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 468988855332 456777788889999876653
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=88.51 E-value=0.17 Score=45.22 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=54.6
Q ss_pred CeEEEECCCc-CHHH-HHHH-H-cCCE-EEEEec-hh---HHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-CCC--Cc
Q 023543 124 KKIVELGSGC-GLVG-CIAA-L-LGAQ-VILTDL-PD---RLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-PDQ--DL 191 (281)
Q Consensus 124 ~~VLELGcGt-G~~~-i~~a-~-~g~~-V~~tD~-~~---~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~~~--~~ 191 (281)
.+||=+|+|. |..+ +.+| + .|++ |+++|. ++ .++.+++ .+.. .+ +..+. ... ..
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~-------~v---~~~~~~~~~i~~~ 239 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDAT-------YV---DSRQTPVEDVPDV 239 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTCE-------EE---ETTTSCGGGHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCCc-------cc---CCCccCHHHHHHh
Confidence 8999999864 6666 6666 4 6886 999999 66 6676652 2221 11 22211 011 01
Q ss_pred CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+..+|+|+-+--. ...++...++++++|++++..
T Consensus 240 -~gg~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 240 -YEQMDFIYEATGF------PKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp -SCCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred -CCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEEe
Confidence 2378888754332 446777788899999877654
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=87.89 E-value=0.52 Score=42.78 Aligned_cols=99 Identities=22% Similarity=0.325 Sum_probs=58.9
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC--C---C
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD--Q---D 190 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~--~---~ 190 (281)
..+|.+||-+|||. |..++.+|+ .|+ +|+++|. ++.++.+++ .+ .. .++..+... . .
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lG--------a~--~i~~~~~~~~~~~~~~ 248 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AG--------FE--TIDLRNSAPLRDQIDQ 248 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TT--------CE--EEETTSSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cC--------Cc--EEcCCCcchHHHHHHH
Confidence 35788999999875 777776666 688 8999998 666766642 22 11 233322110 0 0
Q ss_pred cC-CCCCcEEEEccccCC--------CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 LI-QPLPDYVLGSDVIYS--------EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 ~~-~~~fD~Iia~d~iy~--------~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.. ...+|+|+-+---.. .......++...++++++|++++..
T Consensus 249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 249 ILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp HHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred HhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 11 236898885432110 0011235777788899999876543
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.84 E-value=0.63 Score=40.82 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=34.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCE---EEEEec-hhHHHHHHHHH
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQ---VILTDL-PDRLRLLKKNI 163 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~---V~~tD~-~~~l~~~~~N~ 163 (281)
.+.+|+||-||+|-+++.+.+.|.+ |.++|+ +.+.+..+.|.
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~ 60 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH 60 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC
Confidence 4559999999999988888888875 489999 77777777663
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=87.20 E-value=10 Score=32.06 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=52.4
Q ss_pred ccccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC--CCcC
Q 023543 118 MLLLHGKKIVELGSGCGL---VGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD--QDLI 192 (281)
Q Consensus 118 ~~~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~--~~~~ 192 (281)
++.++||++|==|++.|+ ++..++..|++|+.+|.... +.+.+.++..+ .++.+...|..+... ..+.
T Consensus 4 ~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~-~~~~~~~~~~g------~~~~~~~~Dv~d~~~v~~~~~ 76 (247)
T 4hp8_A 4 PFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP-DETLDIIAKDG------GNASALLIDFADPLAAKDSFT 76 (247)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC-HHHHHHHHHTT------CCEEEEECCTTSTTTTTTSST
T ss_pred CcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH-HHHHHHHHHhC------CcEEEEEccCCCHHHHHHHHH
Confidence 456899999999998884 45566678999999998322 22223333333 356667767654332 1223
Q ss_pred CCCCcEEEEccccCC
Q 023543 193 QPLPDYVLGSDVIYS 207 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~ 207 (281)
..++|+++.+--+..
T Consensus 77 ~g~iDiLVNNAGi~~ 91 (247)
T 4hp8_A 77 DAGFDILVNNAGIIR 91 (247)
T ss_dssp TTCCCEEEECCCCCC
T ss_pred hCCCCEEEECCCCCC
Confidence 457899998655443
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=87.08 E-value=0.59 Score=41.04 Aligned_cols=93 Identities=16% Similarity=0.092 Sum_probs=53.7
Q ss_pred CCC-eEEEECC-C-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE-ecCCCCCCCcCCCC
Q 023543 122 HGK-KIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL-TWGDDPDQDLIQPL 195 (281)
Q Consensus 122 ~~~-~VLELGc-G-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l-~w~~~~~~~~~~~~ 195 (281)
+|. +||=.|| | .|...+.+|+ .|++|++++. ++.++.+++ .+.. . +... +.....-..+....
T Consensus 149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~-----~--v~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 149 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGAS-----E--VISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTCS-----E--EEEHHHHCSSCCCSSCCCC
T ss_pred CCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCc-----E--EEECCCchHHHHHHhhcCC
Confidence 454 8999997 4 3666655554 7899999999 666776653 2322 1 1111 11000011122346
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+-+-- . +.+....++++++|++++..
T Consensus 218 ~d~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 218 WQGAVDPVG-----G--KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp EEEEEESCC-----T--HHHHHHHTTEEEEEEEEECC
T ss_pred ccEEEECCc-----H--HHHHHHHHhhcCCCEEEEEe
Confidence 888775432 1 25666677889999877654
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.65 E-value=3.6 Score=34.86 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=47.5
Q ss_pred cCCCeEEEECCCcCHHHHHH----HHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc--
Q 023543 121 LHGKKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL-- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~----a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~-- 191 (281)
+++++||=.|++. -+|..+ +..|++|++++. ++.++.+...+...+.. .++.+...|..+.... .+
T Consensus 30 l~~k~vlVTGasg-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~~~~~ 104 (279)
T 1xg5_A 30 WRDRLALVTGASG-GIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYP----GTLIPYRCDLSNEEDILSMFSA 104 (279)
T ss_dssp GTTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCS----SEEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCC----ceEEEEEecCCCHHHHHHHHHH
Confidence 5789999999654 445544 446999999999 55565555555443322 3455666554432110 00
Q ss_pred ---CCCCCcEEEEcccc
Q 023543 192 ---IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ---~~~~fD~Iia~d~i 205 (281)
...++|+||.+--+
T Consensus 105 ~~~~~g~iD~vi~~Ag~ 121 (279)
T 1xg5_A 105 IRSQHSGVDICINNAGL 121 (279)
T ss_dssp HHHHHCCCSEEEECCCC
T ss_pred HHHhCCCCCEEEECCCC
Confidence 01368999976554
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.63 E-value=0.63 Score=40.85 Aligned_cols=91 Identities=15% Similarity=0.069 Sum_probs=52.8
Q ss_pred CCC-eEEEECC-C-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC---CCCCcCC
Q 023543 122 HGK-KIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD---PDQDLIQ 193 (281)
Q Consensus 122 ~~~-~VLELGc-G-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~---~~~~~~~ 193 (281)
++. +||=.|+ | .|...+.+|+ .|++|++++. ++.++.+++ .+.. . + ++..+. .-..+..
T Consensus 148 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~-----~--~--i~~~~~~~~~~~~~~~ 214 (328)
T 1xa0_A 148 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAK-----E--V--LAREDVMAERIRPLDK 214 (328)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCS-----E--E--EECC---------CCS
T ss_pred CCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCc-----E--E--EecCCcHHHHHHHhcC
Confidence 454 8999997 4 3666666665 7889999999 666776653 2322 1 1 111111 0011223
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.++|+|+-+-- . ..+....++++++|++++..
T Consensus 215 ~~~d~vid~~g--~-----~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 215 QRWAAAVDPVG--G-----RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp CCEEEEEECST--T-----TTHHHHHHTEEEEEEEEECS
T ss_pred CcccEEEECCc--H-----HHHHHHHHhhccCCEEEEEe
Confidence 46898875432 1 13556667889999877654
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=86.54 E-value=4.1 Score=36.34 Aligned_cols=93 Identities=11% Similarity=-0.012 Sum_probs=54.5
Q ss_pred cCCCeEEEECCC--cCHHHHHHHH-cCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-C---CCcCC
Q 023543 121 LHGKKIVELGSG--CGLVGCIAAL-LGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-D---QDLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcG--tG~~~i~~a~-~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~---~~~~~ 193 (281)
.+|.+||=+|++ .|..++.+|+ .|++|+++.-++.++.+++ .+.. ..++..+.. . ....+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----lGa~---------~vi~~~~~~~~~~v~~~t~ 229 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKS----RGAE---------EVFDYRAPNLAQTIRTYTK 229 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH----TTCS---------EEEETTSTTHHHHHHHHTT
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHH----cCCc---------EEEECCCchHHHHHHHHcc
Confidence 578899999983 4666666665 7899888854555665542 3322 122222110 0 01223
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhh-CCCcEEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLC-GTQTTIFLAG 232 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll-~~~g~~~l~~ 232 (281)
..+|+|+-+--- ...+....+.+ +++|++++..
T Consensus 230 g~~d~v~d~~g~------~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 230 NNLRYALDCITN------VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp TCCCEEEESSCS------HHHHHHHHHHSCTTCEEEEESS
T ss_pred CCccEEEECCCc------hHHHHHHHHHhhcCCCEEEEEe
Confidence 458988754332 45566666777 6888876643
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=85.67 E-value=3.4 Score=34.92 Aligned_cols=107 Identities=19% Similarity=0.142 Sum_probs=62.2
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-h-hHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc-
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-P-DRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL- 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~-~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~- 191 (281)
.++++++|=-|++.|+ ++..+++.|++|+++|. + +.++.+.+.+...+ .++.+...|..+.... .+
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~ 88 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG------SDAIAIKADIRQVPEIVKLFD 88 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHH
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHHHHH
Confidence 4789999999987663 23344557999999887 3 34555555555433 3566667665432110 00
Q ss_pred ----CCCCCcEEEEccccCCCC--------c-----------HHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 ----IQPLPDYVLGSDVIYSEG--------A-----------VGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 ----~~~~fD~Iia~d~iy~~~--------~-----------~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.-++.|++|.+.-+.... . .-.+++.+...++++|.+++..
T Consensus 89 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 152 (270)
T 3is3_A 89 QAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS 152 (270)
T ss_dssp HHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 014689998765543311 1 1234555666677777766554
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.39 E-value=4.7 Score=34.22 Aligned_cols=106 Identities=23% Similarity=0.192 Sum_probs=61.2
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-h-hHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc-
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-P-DRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL- 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~-~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~- 191 (281)
.++++++|=-|++.|+ ++..+++.|++|+++|. + +.++.+...+...+ .++.+...|..+.... .+
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~v~~~~~ 101 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG------GRAVAIRADNRDAEAIEQAIR 101 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC------CcEEEEECCCCCHHHHHHHHH
Confidence 4789999999987663 23344557999999976 3 44555544444432 3466666554432110 00
Q ss_pred ----CCCCCcEEEEccccCCCC--------c-----------HHHHHHHHHHhhCCCcEEEEE
Q 023543 192 ----IQPLPDYVLGSDVIYSEG--------A-----------VGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 192 ----~~~~fD~Iia~d~iy~~~--------~-----------~~~ll~~l~~ll~~~g~~~l~ 231 (281)
..++.|++|.+.-+.... . .-.+++.+...++++|.+++.
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i 164 (271)
T 3v2g_A 102 ETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI 164 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 013789999865543321 1 123455566666777776654
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.31 E-value=1.1 Score=40.58 Aligned_cols=98 Identities=28% Similarity=0.342 Sum_probs=59.3
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC--C---Cc
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD--Q---DL 191 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~--~---~~ 191 (281)
.+|.+||-+|||. |+.++.+|+ .|+ +|+++|. ++.++.+++ .+. .+ ++..+..+ . ..
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa--------~~--i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF--------EI--ADLSLDTPLHEQIAAL 249 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC--------EE--EETTSSSCHHHHHHHH
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC--------cE--EccCCcchHHHHHHHH
Confidence 4788999999875 777776666 688 7999999 667777753 221 11 23222110 0 01
Q ss_pred C-CCCCcEEEEcccc---------CCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 I-QPLPDYVLGSDVI---------YSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 ~-~~~fD~Iia~d~i---------y~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
. ...+|+|+-+--- ++.......++...++++++|++++..
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred hCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 1 2468988854321 111122346777788899999887654
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.22 E-value=10 Score=32.05 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=49.0
Q ss_pred ccCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-CCC----
Q 023543 120 LLHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-PDQ---- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~~~---- 189 (281)
..++++||=-|++.| +|.. +++.|++|++++. .+.++.+.+.+...+. .++.+..+|..+. ...
T Consensus 9 ~~~~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~Dl~~~~~~v~~~~ 82 (311)
T 3o26_A 9 VTKRRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-----ENVVFHQLDVTDPIATMSSLA 82 (311)
T ss_dssp ---CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-----CSEEEEECCTTSCHHHHHHHH
T ss_pred cCCCcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CceEEEEccCCCcHHHHHHHH
Confidence 357889999998765 3443 4457999999999 5555555555544321 3677777776543 110
Q ss_pred -Cc--CCCCCcEEEEccccC
Q 023543 190 -DL--IQPLPDYVLGSDVIY 206 (281)
Q Consensus 190 -~~--~~~~fD~Iia~d~iy 206 (281)
.+ ..+++|++|.+--+.
T Consensus 83 ~~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 83 DFIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHhCCCCCEEEECCccc
Confidence 00 014789999866654
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=85.04 E-value=1 Score=42.31 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=34.5
Q ss_pred CCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHH
Q 023543 123 GKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNI 163 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~ 163 (281)
.-+++||-||+|-+++.+.+.|.+ |.++|+ +.+.+..+.|.
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~ 130 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH 130 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc
Confidence 358999999999888888888887 899999 77777777764
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=84.77 E-value=1.8 Score=38.37 Aligned_cols=96 Identities=9% Similarity=-0.017 Sum_probs=51.4
Q ss_pred cCC-CeEEEECC-Cc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCC----CCCCC-
Q 023543 121 LHG-KKIVELGS-GC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD----DPDQD- 190 (281)
Q Consensus 121 ~~~-~~VLELGc-Gt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~----~~~~~- 190 (281)
.+| .+||=.|+ |. |..++.+|+ .|++|+++.. ++.+...++.++..+.. ..++..+ .....
T Consensus 165 ~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~---------~vi~~~~~~~~~~~~~i 235 (364)
T 1gu7_A 165 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---------QVITEDQNNSREFGPTI 235 (364)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---------EEEEHHHHHCGGGHHHH
T ss_pred CCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCe---------EEEecCccchHHHHHHH
Confidence 467 89999997 43 666666665 7999888864 33211111222333432 1122211 00000
Q ss_pred --c---CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 --L---IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 --~---~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
. ....+|+|+-+-- -..+. ...++++++|++++..
T Consensus 236 ~~~t~~~~~g~Dvvid~~G------~~~~~-~~~~~l~~~G~~v~~g 275 (364)
T 1gu7_A 236 KEWIKQSGGEAKLALNCVG------GKSST-GIARKLNNNGLMLTYG 275 (364)
T ss_dssp HHHHHHHTCCEEEEEESSC------HHHHH-HHHHTSCTTCEEEECC
T ss_pred HHHhhccCCCceEEEECCC------chhHH-HHHHHhccCCEEEEec
Confidence 1 1346898875432 23344 5568899999877653
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=84.46 E-value=1.2 Score=39.42 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=57.9
Q ss_pred CCeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcC----CCCC---------CceEEEEEecCCC
Q 023543 123 GKKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH----GDLR---------GSAVVTELTWGDD 186 (281)
Q Consensus 123 ~~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~----~~~~---------~~i~~~~l~w~~~ 186 (281)
.++|-=||||+ | -++..+|..|.+|++.|. ++.++.+..+++.+-.. .... .++.... +.
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~-~l--- 81 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCT-NL--- 81 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEEC-CH---
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccccc-ch---
Confidence 46888999996 4 356677788999999999 77787777666544211 0000 0111110 00
Q ss_pred CCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 187 PDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 187 ~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
.. .-...|+|+-+ +.-+.+.-..+++.+..+++|+.++
T Consensus 82 -~~--a~~~ad~ViEa-v~E~l~iK~~lf~~l~~~~~~~aIl 119 (319)
T 3ado_A 82 -AE--AVEGVVHIQEC-VPENLDLKRKIFAQLDSIVDDRVVL 119 (319)
T ss_dssp -HH--HTTTEEEEEEC-CCSCHHHHHHHHHHHHTTCCSSSEE
T ss_pred -Hh--HhccCcEEeec-cccHHHHHHHHHHHHHHHhhhccee
Confidence 00 01235666643 3334555678888888888887654
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=84.07 E-value=3.5 Score=35.08 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=54.0
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-----
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD----- 190 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~----- 190 (281)
.++||.+|==|++.|+ ++..++..|++|+++|. ++.++.+.+.++..+ .++.+...|..+..+..
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g------~~~~~~~~Dvt~~~~v~~~~~~ 77 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG------KEVLGVKADVSKKKDVEEFVRR 77 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHH
Confidence 3689999999988884 44556678999999999 777777777776654 34666776654322100
Q ss_pred -c-CCCCCcEEEEcccc
Q 023543 191 -L-IQPLPDYVLGSDVI 205 (281)
Q Consensus 191 -~-~~~~fD~Iia~d~i 205 (281)
. .-.+.|+++.+--+
T Consensus 78 ~~~~~G~iDiLVNNAGi 94 (254)
T 4fn4_A 78 TFETYSRIDVLCNNAGI 94 (254)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHcCCCCEEEECCcc
Confidence 0 11568999976543
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=83.19 E-value=5.4 Score=33.60 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=51.2
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-c---
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-L--- 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~--- 191 (281)
.+.+++||=-|++.|+ ++..++..|++|+++|. .+.++.+.+.+....- .++.+...|..+..... +
T Consensus 17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~ 91 (266)
T 4egf_A 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG-----TDVHTVAIDLAEPDAPAELARR 91 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-----CCEEEEECCTTSTTHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHHHHH
Confidence 3678999999987663 23344557999999999 6666655555544211 35777777665432210 0
Q ss_pred ---CCCCCcEEEEccccCC
Q 023543 192 ---IQPLPDYVLGSDVIYS 207 (281)
Q Consensus 192 ---~~~~fD~Iia~d~iy~ 207 (281)
..++.|++|.+--+..
T Consensus 92 ~~~~~g~id~lv~nAg~~~ 110 (266)
T 4egf_A 92 AAEAFGGLDVLVNNAGISH 110 (266)
T ss_dssp HHHHHTSCSEEEEECCCCC
T ss_pred HHHHcCCCCEEEECCCcCC
Confidence 0147899998655443
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=83.09 E-value=2.8 Score=38.06 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=28.5
Q ss_pred cCCCeEEEECCCc-CHHHHHHH-HcCCEEEEEec-hhHHHHHHH
Q 023543 121 LHGKKIVELGSGC-GLVGCIAA-LLGAQVILTDL-PDRLRLLKK 161 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a-~~g~~V~~tD~-~~~l~~~~~ 161 (281)
+++++|+=+|+|. |......+ .+|++|++.|. ++.++.++.
T Consensus 182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH
T ss_pred cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4778999999873 43333222 37999999999 666666543
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.99 E-value=1.5 Score=39.15 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=33.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLK 160 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~ 160 (281)
.+|..++|..||.|--+..++.. + .+|+++|. +++++.++
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 46889999999999888877763 3 48999999 88998874
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=82.90 E-value=9.4 Score=33.87 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=62.1
Q ss_pred CCeEEEECCCcCHHHHHHHHc---CCEEEEEechhHHHHHHHHHHHhh--------------cCCC----CCCceEEEEE
Q 023543 123 GKKIVELGSGCGLVGCIAALL---GAQVILTDLPDRLRLLKKNIENNL--------------RHGD----LRGSAVVTEL 181 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~~~~l~~~~~N~~~n~--------------~~~~----~~~~i~~~~l 181 (281)
.+.|+-||||.=.-..-+... +.+++=+|.|++++.=++.+..+. .... ...+......
T Consensus 91 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~~ 170 (334)
T 3iei_A 91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGA 170 (334)
T ss_dssp CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEEC
T ss_pred CCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEcc
Confidence 568999999986555555443 457888899888664333333211 0000 0245666666
Q ss_pred ecCCC--CCC-----CcCCCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 182 TWGDD--PDQ-----DLIQPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 182 ~w~~~--~~~-----~~~~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|..+. .+. .+.....-++++-.++++ ++....+++.+.....+ |.+++..+.
T Consensus 171 DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~-~~~i~yE~i 231 (334)
T 3iei_A 171 DLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER-AMFINYEQV 231 (334)
T ss_dssp CTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS-EEEEEEEEC
T ss_pred ccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC-ceEEEEecc
Confidence 64331 100 011123346666555443 56789999999987754 444444444
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=82.80 E-value=1.3 Score=39.40 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=31.5
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHH
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKK 161 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~ 161 (281)
..+|.+||-+|+|. |...+.+|+ .|++|+++|. ++.++.+++
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~ 221 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK 221 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 35789999999864 555555555 7899999998 666777654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=82.74 E-value=1.6 Score=38.90 Aligned_cols=92 Identities=23% Similarity=0.174 Sum_probs=56.6
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------C
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------D 190 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------~ 190 (281)
..+|.+||=+|+|. |..++.+|+ .|++|+++|. ++.++.+++ .+.. ..++ .+..+. .
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---------~vi~-~~~~~~~~~v~~~ 252 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA----LGAD---------HGIN-RLEEDWVERVYAL 252 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HTCS---------EEEE-TTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH----cCCC---------EEEc-CCcccHHHHHHHH
Confidence 35789999999775 666665555 7899999999 666766643 3322 1222 111110 0
Q ss_pred cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 ~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.....+|+|+-+-- . ..+....++++++|++++..
T Consensus 253 ~~g~g~D~vid~~g---~----~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 253 TGDRGADHILEIAG---G----AGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp HTTCCEEEEEEETT---S----SCHHHHHHHEEEEEEEEEEC
T ss_pred hCCCCceEEEECCC---h----HHHHHHHHHhhcCCEEEEEe
Confidence 11347898886533 2 23555667889999887664
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=82.12 E-value=5 Score=34.42 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=46.7
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hh-HHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc-
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PD-RLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL- 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~-~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~- 191 (281)
.+++++||=-|++.|+ ++..++..|++|+++|. ++ ..+.+.+-++..+ .++.+...|..+.... .+
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~ 117 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG------VKCVLLPGDLSDEQHCKDIVQ 117 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT------CCEEEEESCTTSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC------CcEEEEECCCCCHHHHHHHHH
Confidence 3688999999987663 23344557999999998 43 3444444333332 3566666665432110 00
Q ss_pred ----CCCCCcEEEEcccc
Q 023543 192 ----IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ----~~~~fD~Iia~d~i 205 (281)
.-.++|++|.+.-+
T Consensus 118 ~~~~~~g~iD~lvnnAg~ 135 (291)
T 3ijr_A 118 ETVRQLGSLNILVNNVAQ 135 (291)
T ss_dssp HHHHHHSSCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 01468999976443
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=81.71 E-value=7.9 Score=32.34 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=47.8
Q ss_pred ccCCCeEEEECCC--cCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC--c
Q 023543 120 LLHGKKIVELGSG--CGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD--L 191 (281)
Q Consensus 120 ~~~~~~VLELGcG--tG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~--~ 191 (281)
.+++++||=.|++ .|+ ++..+++.|++|++++. +...+.+++-....+. .++.+...|..+..... +
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-----NDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-----CCCEEEECCCSSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-----CCceEEeCCCCCHHHHHHHH
Confidence 3678999999976 453 33445567999999998 4444444443333221 25667776654332110 0
Q ss_pred -----CCCCCcEEEEcccc
Q 023543 192 -----IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 -----~~~~fD~Iia~d~i 205 (281)
..+++|+++.+.-+
T Consensus 79 ~~~~~~~g~id~li~~Ag~ 97 (266)
T 3oig_A 79 ASIKEQVGVIHGIAHCIAF 97 (266)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHhCCeeEEEEcccc
Confidence 01468998876544
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=81.66 E-value=6.1 Score=34.43 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=57.0
Q ss_pred ccCCCeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE-EEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV-TELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~-~~l~w~~~~~~~~~~~~ 195 (281)
.+..++|.=+|+|. | .++..+++.|.+|++. . ++.++.++++ +..... ..... ..+....... . -.+
T Consensus 16 ~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~----g~~~~~-~~~~~~~~~~~~~~~~-~--~~~ 86 (318)
T 3hwr_A 16 YFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEAT----GLRLET-QSFDEQVKVSASSDPS-A--VQG 86 (318)
T ss_dssp ----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHH----CEEEEC-SSCEEEECCEEESCGG-G--GTT
T ss_pred hccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhC----CeEEEc-CCCcEEEeeeeeCCHH-H--cCC
Confidence 46778999999985 3 5566677788899998 7 6666555432 221100 00110 0011001111 1 157
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+.+=.-+ .++.+++.+...++++..++...
T Consensus 87 ~D~vilavk~~---~~~~~l~~l~~~l~~~~~iv~~~ 120 (318)
T 3hwr_A 87 ADLVLFCVKST---DTQSAALAMKPALAKSALVLSLQ 120 (318)
T ss_dssp CSEEEECCCGG---GHHHHHHHHTTTSCTTCEEEEEC
T ss_pred CCEEEEEcccc---cHHHHHHHHHHhcCCCCEEEEeC
Confidence 89998765443 56888888888888887665443
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=81.66 E-value=7.9 Score=34.16 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=23.0
Q ss_pred ccCCCeEEEECC-C-cCHHHHHHHH-cCCEEEEEe
Q 023543 120 LLHGKKIVELGS-G-CGLVGCIAAL-LGAQVILTD 151 (281)
Q Consensus 120 ~~~~~~VLELGc-G-tG~~~i~~a~-~g~~V~~tD 151 (281)
..+|.+||=+|+ | .|..++.+|+ .|++++++.
T Consensus 165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~ 199 (357)
T 1zsy_A 165 LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVV 199 (357)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEe
Confidence 357899999997 4 3777776666 788865553
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=80.96 E-value=7.6 Score=33.82 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=48.6
Q ss_pred CCCcEEEEcccc---CCC----CcHHH----HHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCC
Q 023543 194 PLPDYVLGSDVI---YSE----GAVGD----LLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWH 262 (281)
Q Consensus 194 ~~fD~Iia~d~i---y~~----~~~~~----ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~ 262 (281)
.++|+|++.-.. ++. .++.. ++....++|+|||.+++-.-.-.+...+.+...+.+.|...++-...-.
T Consensus 205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F~~Vr~vKP~AS 284 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSS 284 (320)
T ss_dssp CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEECCTTC
T ss_pred CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhcceeeeeCCCCc
Confidence 569998873222 222 23333 4444555789999987665444433457788888999986666443333
Q ss_pred CCCCCCcEEEEEEEe
Q 023543 263 PDYCSPRVVVYILVK 277 (281)
Q Consensus 263 ~~~~~~~~~i~~~~~ 277 (281)
.. +.+-+.++.-.+
T Consensus 285 R~-StEvf~La~gf~ 298 (320)
T 2hwk_A 285 LE-ETEVLFVFIGYD 298 (320)
T ss_dssp CS-TTCEEEEEEEEC
T ss_pred cc-cceEEEEEEeec
Confidence 33 555555554443
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.82 E-value=6.6 Score=33.14 Aligned_cols=81 Identities=22% Similarity=0.174 Sum_probs=47.2
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEech-------------hHHHHHHHHHHHhhcCCCCCCceEEEEEec
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDLP-------------DRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~~-------------~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w 183 (281)
.+++++||=-|++.|+ ++..++..|++|+++|.. +.++.+...+...+ .++.+...|.
T Consensus 7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~ 80 (287)
T 3pxx_A 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG------RKAYTAEVDV 80 (287)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT------SCEEEEECCT
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC------CceEEEEccC
Confidence 4689999999987663 233445579999999863 22333433333332 3566777665
Q ss_pred CCCCCC--Cc-----CCCCCcEEEEccccC
Q 023543 184 GDDPDQ--DL-----IQPLPDYVLGSDVIY 206 (281)
Q Consensus 184 ~~~~~~--~~-----~~~~fD~Iia~d~iy 206 (281)
.+.... .+ .-+++|++|.+.-+.
T Consensus 81 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 110 (287)
T 3pxx_A 81 RDRAAVSRELANAVAEFGKLDVVVANAGIC 110 (287)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 432110 00 014789999865543
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=80.78 E-value=12 Score=31.93 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=59.8
Q ss_pred ccCCCeEEEECCC--cCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-Cc-
Q 023543 120 LLHGKKIVELGSG--CGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DL- 191 (281)
Q Consensus 120 ~~~~~~VLELGcG--tG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~- 191 (281)
.+++++||=-|++ .|+ ++..+++.|++|++++. +...+.+++-.... .++.+...|..+.... .+
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~~~ 100 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL-------GAFVAGHCDVADAASIDAVF 100 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH-------TCEEEEECCTTCHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-------CCceEEECCCCCHHHHHHHH
Confidence 3688999999976 333 34455567999999998 44344444333332 2355666555432110 00
Q ss_pred -----CCCCCcEEEEccccCC---------C---Cc-----------HHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 -----IQPLPDYVLGSDVIYS---------E---GA-----------VGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 -----~~~~fD~Iia~d~iy~---------~---~~-----------~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.-.++|++|.+.-+.. . +. .-.+++.+..+++++|.++...
T Consensus 101 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 101 ETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp HHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 1147899998655442 1 11 1234555566667777766544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 281 | ||||
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 0.003 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.3 bits (83), Expect = 0.003
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177
L K ++++GSG G++ AA GA +VI + +K N L H
Sbjct: 31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGK 90
Query: 178 VTELTWGDDPDQDLIQPLPDYVL 200
V E+ + +I Y L
Sbjct: 91 VEEVELPVEKVDIIISEWMGYCL 113
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.89 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.83 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.72 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.71 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.67 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.66 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.66 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.62 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.61 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.6 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.59 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.59 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.56 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.56 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.54 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.53 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.53 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.52 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.52 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.5 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.5 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.5 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.49 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.49 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.49 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.48 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.48 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.47 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.47 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.46 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.44 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.44 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.44 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.43 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.43 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.4 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.38 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.37 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.35 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.34 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.34 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.34 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.33 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.33 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.32 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.32 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.31 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.31 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.31 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.27 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.27 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.26 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.26 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.26 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.25 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.25 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.23 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.22 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.2 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.18 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.17 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.17 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.16 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.1 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.05 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.98 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.92 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.91 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.85 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.81 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.77 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.74 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.62 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.57 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.44 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.34 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.33 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.24 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.21 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.08 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.06 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.03 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.99 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.93 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.86 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.86 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.82 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.8 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.79 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.75 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.63 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.58 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.54 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.45 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.44 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.27 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.1 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.96 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.92 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.88 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.61 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.51 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.38 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.24 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.21 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.08 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.87 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.86 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.69 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.66 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.64 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.41 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.0 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.93 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 94.82 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.74 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.74 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.61 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.32 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 93.9 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 93.76 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.39 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.89 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 92.88 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.59 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.48 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 92.39 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 92.38 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.2 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 92.09 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.71 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 91.09 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.67 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 90.61 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 90.41 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 90.34 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 89.61 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.34 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 89.14 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 88.81 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 88.23 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 88.15 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 88.14 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 88.12 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 87.02 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 86.78 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 86.68 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 86.26 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 86.25 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 86.06 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 85.78 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 85.76 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 85.69 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 85.39 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.17 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 84.77 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 84.46 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 84.34 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 84.01 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 83.69 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 83.42 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 83.31 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 83.01 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 82.77 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 82.7 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 82.24 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 81.76 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 80.03 |
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=6.9e-23 Score=177.57 Aligned_cols=186 Identities=19% Similarity=0.156 Sum_probs=141.4
Q ss_pred CCCchhhhHHHhhccCCCCCCCCCcccccccceEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccC
Q 023543 38 ESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSG 117 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~ 117 (281)
+++||.+++...| +|...+ +.+|.+.++..+ ...+.|..+|+..+++|+ +++|.++.++|...
T Consensus 55 ~~~dW~~~w~~~~---~p~~~~-~~~v~~~~~~~~----~~~~~i~i~pg~aFGTG~-----H~TT~l~l~~l~~~---- 117 (254)
T d2nxca1 55 GDEDWLEAWRRDL---KPALAP-PFVVLAPWHTWE----GAEIPLVIEPGMAFGTGH-----HETTRLALKALARH---- 117 (254)
T ss_dssp CHHHHHHHHHHHC---CCEEET-TEEEECTTCCCC----SSSEEEECCCC-----CC-----SHHHHHHHHHHHHH----
T ss_pred CcchHHHHHHhhC---CCEEEC-CEEEEeccccCC----CcceEEEEccccccCccc-----cchhhHHHHHHHhh----
Confidence 6788998888888 888775 467777765432 346888889987665555 99999999999875
Q ss_pred ccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 118 MLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 118 ~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..+|++|||+|||+|.+++.++++|++|+++|+ +.+++.+++|++.|++. +.+...++. ..+...+|
T Consensus 118 --~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~------~~~~~~d~~----~~~~~~~f 185 (254)
T d2nxca1 118 --LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR------PRFLEGSLE----AALPFGPF 185 (254)
T ss_dssp --CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC------CEEEESCHH----HHGGGCCE
T ss_pred --cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCc------eeEEecccc----cccccccc
Confidence 468999999999999999999999999999999 89999999999999875 345554332 12345789
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
|+|+++-. ...+..+++.+.++|+|||+++++.....+. ..+.+.+. .||.+....
T Consensus 186 D~V~ani~---~~~l~~l~~~~~~~LkpGG~lilSgil~~~~--~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 186 DLLVANLY---AELHAALAPRYREALVPGGRALLTGILKDRA--PLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp EEEEEECC---HHHHHHHHHHHHHHEEEEEEEEEEEEEGGGH--HHHHHHHHHTTCEEEEEE
T ss_pred chhhhccc---cccHHHHHHHHHHhcCCCcEEEEEecchhhH--HHHHHHHHHCCCEEEEEE
Confidence 99998632 3457888999999999999999988766543 33455554 489866553
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.83 E-value=1.2e-19 Score=150.71 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=116.7
Q ss_pred cceEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEE
Q 023543 68 SLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQV 147 (281)
Q Consensus 68 ~~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V 147 (281)
...++..+.|+.+++.+.++.|+..+ ++.++.+|++++. ..++++|||+|||+|.+++.+++.+++|
T Consensus 11 ~~~~~~~~~g~~~~~~t~~gvF~~~~-----~d~~t~lLi~~l~--------~~~~~~VLDiGcG~G~~~~~la~~~~~v 77 (194)
T d1dusa_ 11 VKIVEDILRGKKLKFKTDSGVFSYGK-----VDKGTKILVENVV--------VDKDDDILDLGCGYGVIGIALADEVKST 77 (194)
T ss_dssp EEEEEEEETTEEEEEEEETTSTTTTS-----CCHHHHHHHHHCC--------CCTTCEEEEETCTTSHHHHHHGGGSSEE
T ss_pred eEEEEEEECCeeEEEEcCCCccCCCC-----cCHHHHHHHHhCC--------cCCCCeEEEEeecCChhHHHHHhhcccc
Confidence 34556667899999999988876433 3677887777754 3578999999999999999999999999
Q ss_pred EEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCc-HHHHHHHHHHhhCCC
Q 023543 148 ILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA-VGDLLDTLLQLCGTQ 225 (281)
Q Consensus 148 ~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~-~~~ll~~l~~ll~~~ 225 (281)
+++|+ +.+++.+++|++.|++. ..++.+...|+. + .+.+.+||+|++..++|.... .+.+++.+.++|+||
T Consensus 78 ~~iD~s~~~i~~a~~n~~~~~l~---~~~i~~~~~d~~---~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg 150 (194)
T d1dusa_ 78 TMADINRRAIKLAKENIKLNNLD---NYDIRVVHSDLY---E-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN 150 (194)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCT---TSCEEEEECSTT---T-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE
T ss_pred ceeeeccccchhHHHHHHHhCCc---cceEEEEEcchh---h-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcC
Confidence 99999 88999999999999876 235666654443 2 234678999999888776444 688999999999999
Q ss_pred cEEEEEEeee
Q 023543 226 TTIFLAGELR 235 (281)
Q Consensus 226 g~~~l~~~~r 235 (281)
|.+++.....
T Consensus 151 G~l~i~~~~~ 160 (194)
T d1dusa_ 151 GEIWVVIQTK 160 (194)
T ss_dssp EEEEEEEEST
T ss_pred cEEEEEEeCc
Confidence 9988765433
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.72 E-value=3.2e-17 Score=139.27 Aligned_cols=108 Identities=8% Similarity=0.040 Sum_probs=94.4
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..+|.+|||||||+|.++..+++.+++|+++|+ +.|++.|++++..++.. ++.+...+..+ ..+.+.+||+
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~-----~~~~~~~d~~~---~~~~~~~fD~ 85 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE-----NVRFQQGTAES---LPFPDDSFDI 85 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCC-----SEEEEECBTTB---CCSCTTCEEE
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccc-----ccccccccccc---ccccccccce
Confidence 457899999999999999999999999999999 88999999999998765 67777766543 3356789999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|+++.++++..+.+.+++.+.++|+|||.++++....
T Consensus 86 v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 86 ITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred eeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence 9999999999999999999999999999988876544
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.71 E-value=8.3e-17 Score=135.81 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=93.7
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..++.+|||||||+|..++.+++.|++|+++|+ +++++.|++++..++.. ++.+...++.+ ..+.+.+||+
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~-----~i~~~~~d~~~---l~~~~~~fD~ 84 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQ-----QVEYVQGDAEQ---MPFTDERFHI 84 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCC-C---CCSCTTCEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccc-----ccccccccccc---cccccccccc
Confidence 346789999999999999999999999999999 88999999999988764 78888877653 2345678999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|++..++++..+...+++.+.++|+|||++++.....
T Consensus 85 v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 85 VTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9999999999999999999999999999988876443
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.67 E-value=3.9e-16 Score=136.22 Aligned_cols=109 Identities=10% Similarity=0.103 Sum_probs=94.7
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..++.+|||||||+|..+..+++ .|++|+++|+ +.+++.++++....++. .++.+...++.+. .+.+.+||
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~----~~v~~~~~d~~~l---~~~~~sfD 137 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA----DNITVKYGSFLEI---PCEDNSYD 137 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT----TTEEEEECCTTSC---SSCTTCEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccc----ccccccccccccc---cccccccc
Confidence 45789999999999999998887 5889999999 88999999999998876 5788888776542 34567899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
+|++.+++++..+...+++.+.++|+|||.+++.....
T Consensus 138 ~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 175 (282)
T d2o57a1 138 FIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK 175 (282)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred hhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 99999999998899999999999999999998886543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.9e-16 Score=135.44 Aligned_cols=123 Identities=15% Similarity=0.048 Sum_probs=101.9
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
+|.+.-..+.|...+. ..+|++|||||||+|..+..+++ .|++|+++|+ +.+++.+++|+..+++. +++.
T Consensus 15 ~p~~~~~~~~l~~~~~----l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~----~~v~ 86 (245)
T d1nkva_ 15 NPFTEEKYATLGRVLR----MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS----ERVH 86 (245)
T ss_dssp SSCCHHHHHHHHHHTC----CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT----TTEE
T ss_pred CCCCHHHHHHHHHHcC----CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhcc----ccch
Confidence 4555555566665432 45789999999999999888876 5789999999 88999999999999876 5788
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+...++.+. ..+.+||+|++..++++..+.+.+++.+.++|||||.+++....
T Consensus 87 ~~~~d~~~~----~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 87 FIHNDAAGY----VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp EEESCCTTC----CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred hhhhHHhhc----cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence 888776542 34578999999999999999999999999999999999987654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=3.8e-16 Score=130.72 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=86.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||||||+|..++.+++.|.+|+|+|+ ++|++.+++++...+.. +.+...+. .+..+.+.+||+|
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~------~~~~~~d~---~~l~~~~~~fD~I 106 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESN------VEFIVGDA---RKLSFEDKTFDYV 106 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC------CEEEECCT---TSCCSCTTCEEEE
T ss_pred CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccccc------cccccccc---ccccccCcCceEE
Confidence 35679999999999999999999999999999 88999999988776533 44444333 2334566889999
Q ss_pred EEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++.+++++.. +...+++.+.++|+|||.+++....
T Consensus 107 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 107 IFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9999998854 6788999999999999998887653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.3e-15 Score=125.73 Aligned_cols=131 Identities=14% Similarity=0.027 Sum_probs=98.9
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
...+.+|||||||+|..+..++. .+.+|+++|+ ++|++.|++++..++.. ++.+.+.+..+ ..+.+.+||
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~-----~~~f~~~d~~~---~~~~~~~fD 129 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR-----VRNYFCCGLQD---FTPEPDSYD 129 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG-----EEEEEECCGGG---CCCCSSCEE
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccc-----ccccccccccc---ccccccccc
Confidence 34678999999999998887664 4558999999 88999999998877654 56777766543 223467899
Q ss_pred EEEEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEeeeCh------------hHHHHHHHHHh-cCCeEEEEec
Q 023543 198 YVLGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGELRND------------SVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 198 ~Iia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~r~~------------~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
+|++.+++++... ...+++.++++|+|+|.+++....... ...+.+.+.+. .||.+.....
T Consensus 130 ~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~ 205 (222)
T d2ex4a1 130 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 205 (222)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred ccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence 9999999988654 468999999999999999887543221 02344556565 4998776654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.61 E-value=2.1e-15 Score=124.77 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=87.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||||||+|..++.+++.|.+|+++|+ +.+++.+++++...+.. ++.+...|..+.. .+.+||+|
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~-----~~~~~~~d~~~~~----~~~~fD~I 99 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLD-----NLQTDLVDLNTLT----FDGEYDFI 99 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCT-----TEEEEECCTTTCC----CCCCEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhcccc-----chhhhheeccccc----ccccccEE
Confidence 46679999999999999999999999999999 78999999999887765 5666665543321 35789999
Q ss_pred EEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
++..++++ ......+++.+.++|+|+|.+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 100 LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999987 35678999999999999999887654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=7.4e-16 Score=130.57 Aligned_cols=100 Identities=17% Similarity=0.179 Sum_probs=80.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..+..+++.|++|+|+|+ +.|++.+++|...+ +...+ ..+..+.+.+||+|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~-----------~~~~~---~~~l~~~~~~fD~i 106 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKN-----------VVEAK---AEDLPFPSGAFEAV 106 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSC-----------EEECC---TTSCCSCTTCEEEE
T ss_pred CCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccccc-----------ccccc---ccccccccccccce
Confidence 46789999999999999999999999999999 88999988752211 22222 22334556889999
Q ss_pred EEc-cccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGS-DVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~-d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++. +++++..+...+++.+.++|+|||.++++...
T Consensus 107 i~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 107 LALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp EECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 985 68888888999999999999999999888753
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.3e-15 Score=125.79 Aligned_cols=170 Identities=15% Similarity=0.036 Sum_probs=112.7
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCC-----------
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHG----------- 170 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~----------- 170 (281)
...|.+|+.+.+. ..++++|||+|||+|..++.+|..|++|+|+|+ +.+++.++++........
T Consensus 30 ~~~l~~~~~~~l~----~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (229)
T d2bzga1 30 HQLLKKHLDTFLK----GKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVF 105 (229)
T ss_dssp CHHHHHHHHHHHT----TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEE
T ss_pred CHHHHHHHHHhcC----CCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhccccccee
Confidence 5567777765422 357889999999999999999999999999999 889998887765432110
Q ss_pred -CCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEeeeChh---------
Q 023543 171 -DLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGELRNDS--------- 238 (281)
Q Consensus 171 -~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~--------- 238 (281)
....++.+...|+.+.. ......||+|+.+.++++ ++..+..++.+.++|+|||.+++......+.
T Consensus 106 ~~~~~~v~~~~~d~~~l~--~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~ 183 (229)
T d2bzga1 106 KSSSGNISLYCCSIFDLP--RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYV 183 (229)
T ss_dssp EETTSSEEEEESCGGGGG--GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCC
T ss_pred eecCCcEEEEEcchhhcc--ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCC
Confidence 01234555554432211 123467999999988877 5778999999999999999987776543210
Q ss_pred HHHHHHHHHhcCCeEEEEecC-CCCCCCCC-----CcEEEEEEEec
Q 023543 239 VLEYFLEAAMKDFVIGRVEQT-QWHPDYCS-----PRVVVYILVKK 278 (281)
Q Consensus 239 ~~~~fl~~~~~~f~v~~i~~~-~~~~~~~~-----~~~~i~~~~~k 278 (281)
..+.....+..+|.++.+... ...+.++. -.-.+|.+.||
T Consensus 184 ~~~el~~lf~~~~~i~~le~~~~~~~~~~~~gl~~l~e~~y~l~~k 229 (229)
T d2bzga1 184 PHAEIERLFGKICNIRCLEKVDAFEERHKSWGIDCLFEKLYLLTEK 229 (229)
T ss_dssp CHHHHHHHHTTTEEEEEEEEEECCCGGGGGGTCSCCEEEEEEEEEC
T ss_pred CHHHHHHHhcCCCEEEEEEEecccCcchhhcCcchHhheeEEEeeC
Confidence 112223334567888776432 23332222 23357888775
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.59 E-value=5.4e-15 Score=121.39 Aligned_cols=105 Identities=16% Similarity=0.091 Sum_probs=86.6
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..+|.+|||+|||+|.+++.+|+.+++|+++|+ +++++.+++|++.+++. .++++...+..+ .....+.||+
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~----~~v~~~~gda~~---~~~~~~~~D~ 103 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLG----DNVTLMEGDAPE---ALCKIPDIDI 103 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC----TTEEEEESCHHH---HHTTSCCEEE
T ss_pred CCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCC----cceEEEECchhh---cccccCCcCE
Confidence 467999999999999999999999899999999 89999999999999886 578888755422 1223468999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|++.... ...+.+++.+.++|+|+|++++....
T Consensus 104 v~~~~~~---~~~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 104 AVVGGSG---GELQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp EEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred EEEeCcc---ccchHHHHHHHHHhCcCCEEEEEeec
Confidence 9987654 34678999999999999998776543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=6e-15 Score=125.67 Aligned_cols=101 Identities=14% Similarity=0.090 Sum_probs=81.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..++.+++.|++|+|+|+ +.|++.|++|+..++. ++.+...++.+. .+ ..+||+|
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~------~i~~~~~d~~~l---~~-~~~fD~I 109 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL------KIEFLQGDVLEI---AF-KNEFDAV 109 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC------CCEEEESCGGGC---CC-CSCEEEE
T ss_pred CCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc------cchheehhhhhc---cc-ccccchH
Confidence 45679999999999999999999999999999 8899999999988754 466777555432 22 3579999
Q ss_pred EEc-cccCCC--CcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGS-DVIYSE--GAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~-d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++. .++++. .....+++.+.++|+|||++++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 986 455443 45678999999999999998874
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.56 E-value=1.1e-14 Score=122.58 Aligned_cols=107 Identities=11% Similarity=0.027 Sum_probs=85.0
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH----cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~----~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
..++.+|||||||+|..++.+++ .+++|+|+|+ ++|++.|++++...+.. .++.+...+ .. .+..+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~----~~~~~~~~d---~~--~~~~~ 107 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE----IPVEILCND---IR--HVEIK 107 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS----SCEEEECSC---TT--TCCCC
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc----chhhhccch---hh--ccccc
Confidence 35688999999999999998886 4679999999 89999999999876544 344444322 22 23446
Q ss_pred CCcEEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 195 LPDYVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 195 ~fD~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
.+|+|+++.++++. .+...+++.+.+.|+|||.+++....+
T Consensus 108 ~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 108 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp SEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred cceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence 78999999998774 578899999999999999999887554
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.54 E-value=2.4e-14 Score=116.82 Aligned_cols=138 Identities=7% Similarity=-0.067 Sum_probs=94.2
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCC-------CCCceEEEEEecCCCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGD-------LRGSAVVTELTWGDDPDQDL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~-------~~~~i~~~~l~w~~~~~~~~ 191 (281)
..+|++|||+|||+|..++.+|+.|.+|+++|+ +.|++.+++++........ ....+.+...++.+... .
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~--~ 95 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA--R 95 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH--H
T ss_pred CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc--c
Confidence 457899999999999999999999999999999 8899999988755432100 01223344443322111 1
Q ss_pred CCCCCcEEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEeeeChh---------HHHHHHHHHhcCCeEEEEecC
Q 023543 192 IQPLPDYVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGELRNDS---------VLEYFLEAAMKDFVIGRVEQT 259 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~---------~~~~fl~~~~~~f~v~~i~~~ 259 (281)
....||+|+++.++++. .....+++.+.++|||||.+++........ ..+...+.+..+|.+..+...
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~~~~~i~~~~~~ 174 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQ 174 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEEEEEEEES
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhCCCcEEEEEEEe
Confidence 23468999999888774 357889999999999999987765433211 112222333457888777544
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.53 E-value=7e-15 Score=125.38 Aligned_cols=101 Identities=10% Similarity=0.021 Sum_probs=81.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..++.+++.|.+|+|+|. ++|++.|++++..++. ++.+...|+.+. . .+.+||+|
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~------~v~~~~~d~~~~---~-~~~~fD~i 105 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL------KPRLACQDISNL---N-INRKFDLI 105 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC------CCEEECCCGGGC---C-CSCCEEEE
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc------cceeeccchhhh---c-cccccccc
Confidence 56789999999999999999999999999999 8899999999887764 366666555432 1 24689999
Q ss_pred EEc-cccCC---CCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGS-DVIYS---EGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~-d~iy~---~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++. .++++ ......+++.+.++|+|||.+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 985 45443 456778999999999999998764
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=2e-14 Score=127.50 Aligned_cols=103 Identities=19% Similarity=0.249 Sum_probs=84.6
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++|++|||||||+|++++.+|+.|+ +|+++|.+++...+++++..|+.. +++.+...+.. +..+...+||+
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~----~~v~~~~~~~~---~~~~~~~~~D~ 103 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLD----HVVTIIKGKVE---EVELPVEKVDI 103 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCT----TTEEEEESCTT---TCCCSSSCEEE
T ss_pred cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCc----cccceEeccHH---HcccccceeEE
Confidence 57899999999999999999999987 699999966678888999999876 57887775543 33345678999
Q ss_pred EEEccc---cCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 199 VLGSDV---IYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 199 Iia~d~---iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
|++.-+ ++++..++.++..+.++|+|||.++
T Consensus 104 ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 104 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 988544 3446789999999999999999875
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=3.2e-14 Score=126.78 Aligned_cols=103 Identities=22% Similarity=0.244 Sum_probs=86.0
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++|++|||||||+|++++.+|+.|+ +|+++|.++++..+++++..|+.. .++.+...+.. +..+++++||+
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~----~~i~~i~~~~~---~l~~~~~~~D~ 108 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFS----DKITLLRGKLE---DVHLPFPKVDI 108 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCT----TTEEEEESCTT---TSCCSSSCEEE
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCcc----ccceEEEeehh---hccCcccceeE
Confidence 46899999999999999999999997 799999977888999999999876 57877775433 33455678999
Q ss_pred EEEcccc---CCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 199 VLGSDVI---YSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 199 Iia~d~i---y~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
|++..+. .+....+.++..+.++|||||.++
T Consensus 109 i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 9985554 457789999999999999999874
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.52 E-value=7.2e-15 Score=123.97 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=84.0
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+++++|||||||+|..+..+++.|.+|+++|+ +++++.++++.. .++.+...++.+. ..+.+||+
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~---------~~~~~~~~~~~~~----~~~~~fD~ 84 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK---------DGITYIHSRFEDA----QLPRRYDN 84 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC---------SCEEEEESCGGGC----CCSSCEEE
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc---------ccccccccccccc----cccccccc
Confidence 367889999999999999999999999999999 889999986632 2466666554332 13468999
Q ss_pred EEEccccCCCCcHHHHHHHHH-HhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLL-QLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~-~ll~~~g~~~l~~~~ 234 (281)
|++.+++++.++...+++.+. ++|+|||.+++..+.
T Consensus 85 I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 85 IVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 999999999999999999987 789999999988654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.50 E-value=4.7e-15 Score=118.03 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=87.1
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++|++|||||||||.+|+.++.+|+ +|+++|. +.+++.+++|++.++.. +++.+...|+.... ...+.+||
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~----~~~~ii~~D~~~~l--~~~~~~fD 85 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE----NRFTLLKMEAERAI--DCLTGRFD 85 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG----GGEEEECSCHHHHH--HHBCSCEE
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccc----cchhhhcccccccc--cccccccc
Confidence 46899999999999999999998887 6999999 89999999999999876 56777776643321 12457899
Q ss_pred EEEEccccCCCCcHHHHHHHHHH--hhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQ--LCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~--ll~~~g~~~l~~~ 233 (281)
+|++ |+.|........+..+.. +|+++|.+++...
T Consensus 86 iIf~-DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 86 LVFL-DPPYAKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp EEEE-CCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred eeEe-chhhccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 8887 788888888888888765 5899999887654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=9.4e-14 Score=120.57 Aligned_cols=135 Identities=13% Similarity=0.164 Sum_probs=98.2
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
-|-.|.++..... ...+.+|||||||+|.+++.+++. .++|+++|+ +.+++.|++|++.+++. ++.+
T Consensus 93 eTE~lv~~~l~~~-----~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~-----~v~~ 162 (274)
T d2b3ta1 93 DTECLVEQALARL-----PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-----NIHI 162 (274)
T ss_dssp THHHHHHHHHHHS-----CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-----SEEE
T ss_pred chhhhhhhHhhhh-----cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-----ccee
Confidence 4566676665432 235678999999999999998874 468999999 88999999999999875 6888
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCC-------------------------cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEG-------------------------AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~-------------------------~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
..-||.+. +.+.+||+|+++-+..... .+..+++...++|+++|.+++...
T Consensus 163 ~~~d~~~~----~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig 238 (274)
T d2b3ta1 163 LQSDWFSA----LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 238 (274)
T ss_dssp ECCSTTGG----GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred eecccccc----cCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 87666432 3457899999976643321 256788888899999999988765
Q ss_pred eeChhHHHHHHHHHhcCCe
Q 023543 234 LRNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 234 ~r~~~~~~~fl~~~~~~f~ 252 (281)
......+..++. ..||.
T Consensus 239 ~~q~~~v~~~l~--~~gf~ 255 (274)
T d2b3ta1 239 WQQGEAVRQAFI--LAGYH 255 (274)
T ss_dssp SSCHHHHHHHHH--HTTCT
T ss_pred chHHHHHHHHHH--HCCCC
Confidence 444444443442 24775
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.50 E-value=2.2e-13 Score=116.89 Aligned_cols=104 Identities=11% Similarity=0.097 Sum_probs=85.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..++|||||||+|..++.+++. +.+++++|++++++.+++++...+.. .++.+...|..+ . ..++||+|
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~----~rv~~~~~D~~~---~--~~~~~D~v 150 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLS----DRVDVVEGDFFE---P--LPRKADAI 150 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCT----TTEEEEECCTTS---C--CSSCEEEE
T ss_pred cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcc----cchhhccccchh---h--cccchhhe
Confidence 4589999999999999999885 45799999988999999999988765 578888865432 1 23579999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+++.++|+..+ ...+++.+++.|+|||++++....
T Consensus 151 ~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 151 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred eeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence 99999988644 457899999999999999887643
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.49 E-value=3.7e-14 Score=121.54 Aligned_cols=107 Identities=9% Similarity=-0.042 Sum_probs=84.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++++|||||||+|.....+++.+. +|+|+|+ ++|++.|+++...++.. .++.+...|.... ....+.+||+
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~----~~v~f~~~D~~~~--~~~~~~~fD~ 96 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR----FKVFFRAQDSYGR--HMDLGKEFDV 96 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS----SEEEEEESCTTTS--CCCCSSCEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCC----cceEEEEcchhhh--cccccccceE
Confidence 4788999999999988888888775 7999999 88999999888776544 4677777554221 1124578999
Q ss_pred EEEccccCCC----CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLGSDVIYSE----GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia~d~iy~~----~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|++..++++. ..+..+++.+.++|+|||.+++...
T Consensus 97 V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 97 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 9999988763 4577899999999999999888765
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.49 E-value=5.9e-14 Score=122.39 Aligned_cols=104 Identities=14% Similarity=0.128 Sum_probs=85.9
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..++.+|||+|||+|..++.++.. +.+|+++|+ +.+++.+++|+..++. ++.+...|..+ ..+ +.+
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~------~~~f~~~d~~~---~~~-~~~ 94 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY------DSEFLEGDATE---IEL-NDK 94 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS------EEEEEESCTTT---CCC-SSC
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc------ccccccccccc---ccc-cCC
Confidence 356789999999999999998873 578999999 8899999999887653 46666655432 222 357
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
||+|++..++++..+...+++.+.+.|||||.+++..+
T Consensus 95 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 95 YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999999999999999999999999999999887764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=2.6e-13 Score=118.25 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=86.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..+|.+|||||||+|.+++.+++ .|++|+++|+ ++.++.+++.+...++. ..+.+...++. ..+.+||
T Consensus 50 l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~----~~~~~~~~d~~------~~~~~fD 119 (280)
T d2fk8a1 50 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN----RSRQVLLQGWE------DFAEPVD 119 (280)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS----SCEEEEESCGG------GCCCCCS
T ss_pred CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccc----cchhhhhhhhh------hhccchh
Confidence 45789999999999999988886 5899999999 78899999999888775 45655554432 1346899
Q ss_pred EEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 198 YVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 198 ~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
.|++.+++.+. ...+.+++.+.++|||||++++....
T Consensus 120 ~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~ 158 (280)
T d2fk8a1 120 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 158 (280)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence 99999999885 56799999999999999999886543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.48 E-value=4e-13 Score=113.83 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=105.3
Q ss_pred CceecchHH-HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCC
Q 023543 96 GSVMWDSGV-VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGD 171 (281)
Q Consensus 96 G~~~W~~s~-~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~ 171 (281)
..|.|+.-. .|+.-|...++. -...+|.+|||||||+|.....+|..+ ..|+|+|+ +.|++.++.++..+
T Consensus 48 e~r~w~p~rsklaA~i~~gl~~-l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~----- 121 (230)
T d1g8sa_ 48 EYRIWNPNKSKLAAAIIKGLKV-MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----- 121 (230)
T ss_dssp EEEECCTTTCHHHHHHHTTCCC-CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----
T ss_pred eeeeECCCccHHHHHHHhhHHh-CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh-----
Confidence 577888633 344444433221 124578999999999999999988854 57999999 88999998876654
Q ss_pred CCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-------hHHHHHH
Q 023543 172 LRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND-------SVLEYFL 244 (281)
Q Consensus 172 ~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-------~~~~~fl 244 (281)
.++.....+.... ....+..+|+++....+++....+.++..+.+.|||||.++++...+.. ..++...
T Consensus 122 --~ni~~i~~d~~~~--~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~ 197 (230)
T d1g8sa_ 122 --ENIIPILGDANKP--QEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQK 197 (230)
T ss_dssp --TTEEEEECCTTCG--GGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHH
T ss_pred --cccceEEEeeccC--cccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHH
Confidence 2455554443322 2233456788777777888889999999999999999999988765432 2344445
Q ss_pred HHHh-cCCeEEEE
Q 023543 245 EAAM-KDFVIGRV 256 (281)
Q Consensus 245 ~~~~-~~f~v~~i 256 (281)
+.+. .||++.+.
T Consensus 198 ~~L~~aGF~ive~ 210 (230)
T d1g8sa_ 198 EILEAGGFKIVDE 210 (230)
T ss_dssp HHHHHHTEEEEEE
T ss_pred HHHHHcCCEEEEE
Confidence 5555 48986554
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=8.4e-13 Score=115.58 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=93.2
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHH-HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAA-LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a-~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
++-.-..+++.+.+. ..+|.+|||||||.|.+++.+| +.|++|+++++ ++.++.+++.+...++. .++.+
T Consensus 44 ~Aq~~k~~~~~~~l~----l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~----~~v~~ 115 (291)
T d1kpia_ 44 EAQYAKRKLALDKLN----LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP----RRKEV 115 (291)
T ss_dssp HHHHHHHHHHHHTTC----CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCS----SCEEE
T ss_pred HHHHHHHHHHHHhcC----CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccc----hhhhh
Confidence 344445556655432 4679999999999999998777 47999999999 77899999999888776 46666
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCC---------CcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSE---------GAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~---------~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
...++. ..+.+||.|++-.++-+. ..++.+++.+.++|+|||++++....
T Consensus 116 ~~~d~~------~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 116 RIQGWE------EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp EECCGG------GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred hhhccc------ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 654432 245789999999998663 34789999999999999999886554
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.47 E-value=2.5e-13 Score=116.75 Aligned_cols=127 Identities=10% Similarity=-0.019 Sum_probs=91.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..+++|||+|||+|.++..++. .+.+|+++|+ +.+++.|+++.... .++.+...+.. +..+.+.+||+
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~-------~~~~~~~~d~~---~~~~~~~~fD~ 161 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASME---TATLPPNTYDL 161 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-------SEEEEEESCGG---GCCCCSSCEEE
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc-------ccceeEEcccc---ccccCCCccce
Confidence 4567999999999999987665 4568999999 88999998775432 24566664432 22334678999
Q ss_pred EEEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEeeeCh-------------hHHHHHHHHHh-cCCeEEEEe
Q 023543 199 VLGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGELRND-------------SVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 199 Iia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~r~~-------------~~~~~fl~~~~-~~f~v~~i~ 257 (281)
|++..++++..+ ...+++.+++.|+|+|.+++....... ...+.|.+.+. .||++.+..
T Consensus 162 I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~ 236 (254)
T d1xtpa_ 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred EEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence 999999998654 568899999999999999887643211 01334555555 499876554
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.7e-13 Score=120.97 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=80.4
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++|++|||||||+|++++.+|+.|+ +|+++|.++....+++++..|+.. .++.+...+.. +......+||+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~----~~i~~~~~~~~---~l~~~~~~~D~ 105 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLE----DTITLIKGKIE---EVHLPVEKVDV 105 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCT----TTEEEEESCTT---TSCCSCSCEEE
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCC----ccceEEEeeHH---HhcCccccceE
Confidence 57899999999999999999999997 699999955445567777777665 57887774433 33345578999
Q ss_pred EEEccccC---CCCcHHHHHHHHHHhhCCCcEEE
Q 023543 199 VLGSDVIY---SEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 199 Iia~d~iy---~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
|++.-+.+ .+..++.++....++|+|||.++
T Consensus 106 Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 106 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 99854433 35678899999999999999876
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.46 E-value=3.1e-12 Score=106.66 Aligned_cols=151 Identities=13% Similarity=0.120 Sum_probs=97.9
Q ss_pred CceecchHH-HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCC
Q 023543 96 GSVMWDSGV-VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGD 171 (281)
Q Consensus 96 G~~~W~~s~-~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~ 171 (281)
|.+.|+.-. .|+..+.... .....+|.+|||||||+|.....+|... .+|+++|+ +.|++.++++++..
T Consensus 31 ~~r~w~p~rsklaa~i~~g~--~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~----- 103 (209)
T d1nt2a_ 31 GYREWVPWRSKLAAMILKGH--RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER----- 103 (209)
T ss_dssp TEEECCGGGCHHHHHHHTSC--CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----
T ss_pred ceeeeCCcchHHHHHHhccc--cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-----
Confidence 678888532 3344443321 1224578999999999999888888742 48999999 89999999988765
Q ss_pred CCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC-------hhHHHHHH
Q 023543 172 LRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN-------DSVLEYFL 244 (281)
Q Consensus 172 ~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~-------~~~~~~fl 244 (281)
+++.+...+..+..........+|+|. ++ ++++...+.+++.+.+.|||||.++++...+. ...++...
T Consensus 104 --~ni~~i~~d~~~~~~~~~~~~~vd~v~-~~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~ 179 (209)
T d1nt2a_ 104 --NNIIPLLFDASKPWKYSGIVEKVDLIY-QD-IAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVL 179 (209)
T ss_dssp --SSEEEECSCTTCGGGTTTTCCCEEEEE-EC-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHH
T ss_pred --CCceEEEeeccCccccccccceEEEEE-ec-ccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHH
Confidence 255555544322111111112234332 33 56677888999999999999999988865432 12344444
Q ss_pred HHHhcCCeEEEEe
Q 023543 245 EAAMKDFVIGRVE 257 (281)
Q Consensus 245 ~~~~~~f~v~~i~ 257 (281)
..+..+|.+....
T Consensus 180 ~~l~~gf~i~E~i 192 (209)
T d1nt2a_ 180 KEMEGDFKIVKHG 192 (209)
T ss_dssp HHHHTTSEEEEEE
T ss_pred HHHHcCCEEEEEE
Confidence 4555799876543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=6.4e-13 Score=109.94 Aligned_cols=95 Identities=16% Similarity=0.062 Sum_probs=75.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||||||+|.....+ .+++++|+ +.+++.++++ ++.+...+.. +..+.+.+||+|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~----~~~~giD~s~~~~~~a~~~------------~~~~~~~d~~---~l~~~~~~fD~I 95 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIARKR------------GVFVLKGTAE---NLPLKDESFDFA 95 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHH----TCCEEEESCHHHHHHHHHT------------TCEEEECBTT---BCCSCTTCEEEE
T ss_pred CCCCeEEEECCCCccccccc----ceEEEEeCChhhccccccc------------cccccccccc---cccccccccccc
Confidence 45668999999999876655 35799999 8899988753 2445554322 233456789999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++..++++..+...+++.+.++|+|||.+++....
T Consensus 96 ~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~ 130 (208)
T d1vlma_ 96 LMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD 130 (208)
T ss_dssp EEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccccccccchhhhhhcCCCCceEEEEecC
Confidence 99999999999999999999999999999888764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.5e-13 Score=117.18 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=93.5
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCC------------------------
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLR------------------------ 173 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~------------------------ 173 (281)
..+|++|||||||+|..++.++..+. +|+++|+ +.+++.+++++..+.......
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 45788999999999998888887766 5999999 889999999988765432100
Q ss_pred CceEEEEEecC---CCCCCCcCCCCCcEEEEccccCCC----CcHHHHHHHHHHhhCCCcEEEEEEeeeCh---------
Q 023543 174 GSAVVTELTWG---DDPDQDLIQPLPDYVLGSDVIYSE----GAVGDLLDTLLQLCGTQTTIFLAGELRND--------- 237 (281)
Q Consensus 174 ~~i~~~~l~w~---~~~~~~~~~~~fD~Iia~d~iy~~----~~~~~ll~~l~~ll~~~g~~~l~~~~r~~--------- 237 (281)
..+. ...... +........++||+|++..++++. ..+..+++.+.++|||||.++++......
T Consensus 129 ~~~~-~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~ 207 (257)
T d2a14a1 129 AAVK-RVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF 207 (257)
T ss_dssp HHEE-EEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhh-cccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccc
Confidence 0011 111111 111223345789999999998763 46778999999999999999887654320
Q ss_pred ----hHHHHHHHHHh-cCCeEEEEe
Q 023543 238 ----SVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 238 ----~~~~~fl~~~~-~~f~v~~i~ 257 (281)
-+.+.+.+.+. .||.+..+.
T Consensus 208 ~~~~~~~~~~~~~l~~aGf~v~~~~ 232 (257)
T d2a14a1 208 SCVALEKGEVEQAVLDAGFDIEQLL 232 (257)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEE
Confidence 01233445555 499887774
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=4.7e-14 Score=123.43 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=81.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..+++|||+|||+|..++.+++.|.+|+|+|+ +.||+.|+++...++.... .....+...+|...........+||+|
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fd~v 133 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPA-FDKWVIEEANWLTLDKDVPAGDGFDAV 133 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHH-HHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccc-cceeeeeeccccccccccCCCCCceEE
Confidence 35679999999999999999999999999999 8899999999887654311 012344555553211111234679999
Q ss_pred EEc-cccCC-------CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGS-DVIYS-------EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~-d~iy~-------~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
++. +++.+ ......+++.+.++|+|||++++...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 975 34443 23477899999999999999888653
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=8.6e-14 Score=112.75 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=81.6
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEec
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w 183 (281)
.|..||... ..+|++|||+|||+|.+|+.++..|++|+++|. +.+++.+++|++.|+.. .++ ...+.
T Consensus 30 ~lf~~l~~~------~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~----~~v--~~~~~ 97 (171)
T d1ws6a1 30 ALFDYLRLR------YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLG----ARV--VALPV 97 (171)
T ss_dssp HHHHHHHHH------CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCC----CEE--ECSCH
T ss_pred HHHHHhhcc------ccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccc----cce--eeeeh
Confidence 344566543 357899999999999999999999999999999 88999999999999876 232 22221
Q ss_pred CCCC-CCCcCCCCCcEEEEccccCCCCcHHHHHHHHH-HhhCCCcEEEEEEe
Q 023543 184 GDDP-DQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLL-QLCGTQTTIFLAGE 233 (281)
Q Consensus 184 ~~~~-~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~-~ll~~~g~~~l~~~ 233 (281)
.... .....+.+||+|++ |+.|.....+.+.+.+. .+++++|++++.+.
T Consensus 98 d~~~~~~~~~~~~fD~If~-DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 98 EVFLPEAKAQGERFTVAFM-APPYAMDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHHHHHHTTCCEEEEEE-CCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred hcccccccccCCccceeEE-ccccccCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 1000 01124468998875 77777655555555543 36899998877654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=1.4e-12 Score=113.82 Aligned_cols=121 Identities=12% Similarity=0.123 Sum_probs=96.5
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
-.+-.-..+++.+.+. ..+|.+|||||||.|-+++.+|+ .|++|+++++ ++.++.+++.+...+.. +++.
T Consensus 44 ~eAQ~~k~~~~~~~l~----l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~----~~v~ 115 (285)
T d1kpga_ 44 QEAQIAKIDLALGKLG----LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL----RSKR 115 (285)
T ss_dssp HHHHHHHHHHHHTTTT----CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC----SCEE
T ss_pred HHHHHHHHHHHHHHcC----CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhh----hhhH
Confidence 3445555677766533 46799999999999999997665 7999999999 77899999998887765 6788
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+...|+.+ .+.+||.|++..++.+. ...+.+++.+.++|+|||++++....
T Consensus 116 ~~~~d~~~------~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 116 VLLAGWEQ------FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp EEESCGGG------CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred HHHhhhhc------ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 88766642 23689999999998774 56789999999999999998876543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=8.2e-12 Score=105.33 Aligned_cols=150 Identities=14% Similarity=0.148 Sum_probs=97.0
Q ss_pred Cceecch--HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcC
Q 023543 96 GSVMWDS--GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 96 G~~~W~~--s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
..|.|+- |.+.|..+. .++. ....+|.+|||||||+|.....+|+. ..+|+++|+ +.+++.++++++..+
T Consensus 47 e~R~w~p~rSKlaa~i~~-~l~~-l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~-- 122 (227)
T d1g8aa_ 47 EYRIWNPNRSKLGAAIMN-GLKN-FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-- 122 (227)
T ss_dssp EEEECCTTTCHHHHHHHT-TCCC-CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--
T ss_pred eEEEECCCccHHHHHHHc-cccc-cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--
Confidence 5677775 444444443 2221 22457999999999999999998874 358999999 889999998876542
Q ss_pred CCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC------hh-HHHH
Q 023543 170 GDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN------DS-VLEY 242 (281)
Q Consensus 170 ~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~------~~-~~~~ 242 (281)
++.....+-..........+.+|+|+. | +..+...+.+++.+.+.|+|||.++++...+. +. .++.
T Consensus 123 -----~~~~i~~d~~~~~~~~~~~~~vD~i~~-d-~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~ 195 (227)
T d1g8aa_ 123 -----NIVPILGDATKPEEYRALVPKVDVIFE-D-VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFRE 195 (227)
T ss_dssp -----TEEEEECCTTCGGGGTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHH
T ss_pred -----CceEEEEECCCcccccccccceEEEEE-E-ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHH
Confidence 344444333222111222345676654 4 44567788899999999999999988865432 22 2222
Q ss_pred HHHHHhcCCeEEEE
Q 023543 243 FLEAAMKDFVIGRV 256 (281)
Q Consensus 243 fl~~~~~~f~v~~i 256 (281)
......++|.+.+.
T Consensus 196 v~~l~~~gf~iie~ 209 (227)
T d1g8aa_ 196 VERELSEYFEVIER 209 (227)
T ss_dssp HHHHHHTTSEEEEE
T ss_pred HHHHHHcCCEEEEE
Confidence 22333468986554
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.38 E-value=2.8e-12 Score=106.34 Aligned_cols=120 Identities=21% Similarity=0.236 Sum_probs=76.9
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++|++|||+|||||.+++.++..|+ +|+++|+ +.+++.+++|++.++.. ..+...+.. ..+.+||
T Consensus 44 dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~------~~~~~~d~~------~~~~~fD 111 (201)
T d1wy7a1 44 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK------FKVFIGDVS------EFNSRVD 111 (201)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS------EEEEESCGG------GCCCCCS
T ss_pred CCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC------ceEEECchh------hhCCcCc
Confidence 47899999999999999999999886 7999999 88999999999887654 555553321 1357899
Q ss_pred EEEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh--cCCeEEEE
Q 023543 198 YVLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM--KDFVIGRV 256 (281)
Q Consensus 198 ~Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~--~~f~v~~i 256 (281)
+|++.-...... .-.+++.. .+..++.++..+... .. ...|+.... .++.+...
T Consensus 112 ~Vi~nPP~~~~~~~~d~~~l~~---~~~~~~~v~~ih~~~-~~-~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 112 IVIMNPPFGSQRKHADRPFLLK---AFEISDVVYSIHLAK-PE-VRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp EEEECCCCSSSSTTTTHHHHHH---HHHHCSEEEEEEECC-HH-HHHHHHHHHHHTTEEEEEE
T ss_pred EEEEcCccccccccccHHHHHH---HHhhcccchhcccch-HH-HHHHHHHHHhhcCceEEEE
Confidence 998755432211 11233333 233345555443322 22 233554443 36665554
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.37 E-value=1.2e-11 Score=106.21 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=84.0
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..++|||||||+|..+..+++. +.+++++|++++++.+++++...+.. +++.+...+. .+. . ..+||+|
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~----~ri~~~~~d~---~~~-~-p~~~D~v 151 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLA----DRVTVAEGDF---FKP-L-PVTADVV 151 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCT----TTEEEEECCT---TSC-C-SCCEEEE
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCc----ceeeeeeeec---ccc-c-cccchhh
Confidence 4579999999999999998885 56899999999999999999988766 5777777443 221 2 2469999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+.+.++|+..+ ...+++.+++.|+|||+++|...
T Consensus 152 ~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 152 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 99999988644 56789999999999999988764
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.35 E-value=3.1e-12 Score=110.15 Aligned_cols=126 Identities=16% Similarity=0.221 Sum_probs=90.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|.+|||+|||+|.+++.+|+.|+ +|+++|+ +.+++.+++|++.|++. +++.+.+.|..+. .....||.
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~----~~v~~~~~D~~~~----~~~~~~D~ 177 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE----DRMSAYNMDNRDF----PGENIADR 177 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT----TTEEEECSCTTTC----CCCSCEEE
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCC----ceEEEEEcchHHh----ccCCCCCE
Confidence 4689999999999999999998875 8999999 89999999999999987 5788877554322 23467999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC----hhHHHHHHHHHh-cCCeEEEEec
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN----DSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~----~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
|+...+.+. ..++....+++++||.+.+...... ....+.+.+.+. .+|.++.+..
T Consensus 178 Ii~~~p~~~----~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~~~ 238 (260)
T d2frna1 178 ILMGYVVRT----HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNE 238 (260)
T ss_dssp EEECCCSSG----GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEE
T ss_pred EEECCCCch----HHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEEEE
Confidence 987665443 3456667778999998765443322 122333333343 4888776543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.34 E-value=2.9e-12 Score=109.61 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=88.7
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+|||+|||+|.+++.+|+. ..+|+++|. +++++.|++|++.++.. .++.+...|..+. +.+.+
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~----~nv~~~~~Di~~~----~~~~~ 154 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI----GNVRTSRSDIADF----ISDQM 154 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC----TTEEEECSCTTTC----CCSCC
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC----CceEEEEeeeecc----cccce
Confidence 467899999999999999998873 358999999 88999999999987544 5777777555432 34578
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCe
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFV 252 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~ 252 (281)
||.|+. | ......+++.+.+.|||||++++..+.- ...++..+.++ .+|.
T Consensus 155 fD~V~l-d----~p~p~~~l~~~~~~LKpGG~lv~~~P~i--~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 155 YDAVIA-D----IPDPWNHVQKIASMMKPGSVATFYLPNF--DQSEKTVLSLSASGMH 205 (250)
T ss_dssp EEEEEE-C----CSCGGGSHHHHHHTEEEEEEEEEEESSH--HHHHHHHHHSGGGTEE
T ss_pred eeeeee-c----CCchHHHHHHHHHhcCCCceEEEEeCCc--ChHHHHHHHHHHCCCc
Confidence 998875 3 2344568899999999999987655532 22455666666 4775
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.34 E-value=3.9e-12 Score=104.96 Aligned_cols=69 Identities=25% Similarity=0.392 Sum_probs=54.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+.|++|||+|||+|.+++.+++.|+ +|+++|+ +.+++.+++|+.. +.+..-|..+ .+.+||
T Consensus 46 dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~----------~~~~~~D~~~------l~~~fD 109 (197)
T d1ne2a_ 46 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG----------VNFMVADVSE------ISGKYD 109 (197)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTT----------SEEEECCGGG------CCCCEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcccc----------ccEEEEehhh------cCCcce
Confidence 47899999999999999999999986 6999999 8899999988542 4455544322 246799
Q ss_pred EEEEccc
Q 023543 198 YVLGSDV 204 (281)
Q Consensus 198 ~Iia~d~ 204 (281)
+|+++-+
T Consensus 110 ~Vi~NPP 116 (197)
T d1ne2a_ 110 TWIMNPP 116 (197)
T ss_dssp EEEECCC
T ss_pred EEEeCcc
Confidence 9887644
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=4.1e-13 Score=113.48 Aligned_cols=104 Identities=12% Similarity=0.131 Sum_probs=78.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|++|||+|||+|..+..+++.+ .+|+++|+ +.+++.++++...... ++.+...++... ...+.+.+||.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~fD~ 124 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH------KVIPLKGLWEDV-APTLPDGHFDG 124 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS------EEEEEESCHHHH-GGGSCTTCEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc------cccccccccccc-ccccccccccc
Confidence 468899999999999999998865 57999999 8899999998766532 345554443221 12345678988
Q ss_pred EEE-----ccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 199 VLG-----SDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 199 Iia-----~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|+. ...+++....+.+++.+.++|||||++++.
T Consensus 125 i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 125 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 773 444555667888999999999999988764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.33 E-value=1e-12 Score=116.45 Aligned_cols=109 Identities=17% Similarity=0.031 Sum_probs=82.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-CCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-QDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~~~~~~~fD~ 198 (281)
.+|++|||+|||+|..++.+|+.+++|+++|+ +.+++.+++|++.|++. ++.+...|..+... ....+.+||+
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~-----~~~~i~~d~~~~~~~~~~~~~~fD~ 218 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLG-----NVRVLEANAFDLLRRLEKEGERFDL 218 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCT-----TEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCC-----CcceeeccHHHHhhhhHhhhcCCCE
Confidence 57999999999999999999887778999999 88999999999999975 57777755422111 1113468999
Q ss_pred EEEccccCCC---------CcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSE---------GAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~---------~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|+..-..+.. ..+..++..+.++|+|||.++++...
T Consensus 219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9975444331 23567888889999999998776543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.6e-12 Score=112.56 Aligned_cols=104 Identities=13% Similarity=0.193 Sum_probs=77.7
Q ss_pred eEEEECCCcCHHHHHHHHc------C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC--------
Q 023543 125 KIVELGSGCGLVGCIAALL------G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-------- 187 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~------g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-------- 187 (281)
+|||+|||+|.++..++.. + .+++++|+ +.|++.+++++...... .++. ++|....
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~ 115 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL----ENVK---FAWHKETSSEYQSRM 115 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC----TTEE---EEEECSCHHHHHHHH
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc----cccc---ccchhhhhhhhcchh
Confidence 7999999999887766542 2 35899999 78999999987654221 2332 3332211
Q ss_pred CCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 188 DQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 188 ~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
.....+.+||+|++..++|+..+...+++.+.++|+|||.+++.....
T Consensus 116 ~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~ 163 (280)
T d1jqea_ 116 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 163 (280)
T ss_dssp TTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred cccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 112346789999999999999999999999999999999988876543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.32 E-value=6.7e-12 Score=108.45 Aligned_cols=124 Identities=13% Similarity=0.111 Sum_probs=86.5
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
+-|-.|.+++..... .....+|+|+|||+|.+++.+++ ..++|+++|+ +++++.|++|++.|+.. .++.+
T Consensus 93 peTE~lv~~~~~~~~----~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~----~~~~i 164 (271)
T d1nv8a_ 93 PETEELVELALELIR----KYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS----DRFFV 164 (271)
T ss_dssp TTHHHHHHHHHHHHH----HHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT----TSEEE
T ss_pred hhhhhhhhhhhhhhc----cccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCC----ceeEE
Confidence 346677777665422 12456899999999999998886 4568999999 89999999999999886 56777
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEcccc------------CCCCc--------HHHHHHHHHHhhCCCcEEEEEEee
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVI------------YSEGA--------VGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~i------------y~~~~--------~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
...+|.+.... ...+||+|+++-.. |.+.. +.-.-+.+.++|+|+|.+++-...
T Consensus 165 ~~~~~~~~~~~--~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~ 238 (271)
T d1nv8a_ 165 RKGEFLEPFKE--KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 238 (271)
T ss_dssp EESSTTGGGGG--GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred eeccccccccc--ccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH
Confidence 77776543221 23579999986442 22111 222334456789999988776553
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.32 E-value=1.8e-12 Score=108.40 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=75.4
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+|||+|||+|..+..+|+. + .+|+++|+ +++++.+++|++.++.. ++.+.. ++.......+.+
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-----n~~~~~---~d~~~~~~~~~~ 144 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-----NVIFVC---GDGYYGVPEFSP 144 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEE---SCGGGCCGGGCC
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-----cccccc---CchHHccccccc
Confidence 457899999999999999998873 3 47999999 88999999999988765 565554 332222234568
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
||+|++...+.+.. +.+.+.|+|||++++..
T Consensus 145 fD~I~~~~~~~~~p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 145 YDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp EEEEEECSBBSCCC------HHHHHHEEEEEEEEEEB
T ss_pred hhhhhhhccHHHhH------HHHHHhcCCCcEEEEEE
Confidence 99999988876532 34567899999987643
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.31 E-value=1.3e-12 Score=116.12 Aligned_cols=150 Identities=17% Similarity=0.079 Sum_probs=100.3
Q ss_pred cCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCC
Q 023543 95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDL 172 (281)
Q Consensus 95 tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (281)
||..+ .-...-.++... ..+|++|||+|||+|..++.+++.|+ +|+++|+ +.+++.+++|++.|++.
T Consensus 126 tG~fl--Dqr~~r~~~~~~------~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~--- 194 (324)
T d2as0a2 126 TGFFL--DQRENRLALEKW------VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE--- 194 (324)
T ss_dssp SCCCS--TTHHHHHHHGGG------CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG---
T ss_pred cCccc--chhhHHHHHHhh------cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCC---
Confidence 45544 334444555543 24689999999999999999999887 7999999 88999999999999986
Q ss_pred CCceEEEEEecCCCCC-CCcCCCCCcEEEEccccCCC---------CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHH
Q 023543 173 RGSAVVTELTWGDDPD-QDLIQPLPDYVLGSDVIYSE---------GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEY 242 (281)
Q Consensus 173 ~~~i~~~~l~w~~~~~-~~~~~~~fD~Iia~d~iy~~---------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~ 242 (281)
.++.+...|..+... ....+.+||+|+..-..+.. ..+..++..+.++|+|||.++++.....-+ .+.
T Consensus 195 -~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~-~~~ 272 (324)
T d2as0a2 195 -DRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD-LQM 272 (324)
T ss_dssp -GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC-HHH
T ss_pred -ccceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCC-HHH
Confidence 467776643211100 01134689999964443322 135668888888999999988776554432 245
Q ss_pred HHHHHh-----cCCeEEEEe
Q 023543 243 FLEAAM-----KDFVIGRVE 257 (281)
Q Consensus 243 fl~~~~-----~~f~v~~i~ 257 (281)
|.+.+. .+-.+..+.
T Consensus 273 f~~~v~~a~~~~gr~~~~~~ 292 (324)
T d2as0a2 273 FKDMIIAAGAKAGKFLKMLE 292 (324)
T ss_dssp HHHHHHHHHHHTTEEEEESS
T ss_pred HHHHHHHHHHHcCCeEEEee
Confidence 655543 244555553
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=2.3e-12 Score=105.23 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=82.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
+.+++||||+||||.+|+.++.+|+ +|+++|. +++++.+++|++.++.. ++.+..-|..+... ..+.+||+
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~-----~~~ii~~d~~~~l~--~~~~~fDl 114 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-----NARVVNSNAMSFLA--QKGTPHNI 114 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-----SEEEECSCHHHHHS--SCCCCEEE
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccc-----ceeeeeeccccccc--ccccccCE
Confidence 6889999999999999999999898 6999999 88999999999987654 55555533221111 13578997
Q ss_pred EEEccccCCCCcHHHHHHHHHH--hhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQ--LCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~--ll~~~g~~~l~~~~ 234 (281)
|+ .|+.|.....+.++..+.+ +|+++|.+++....
T Consensus 115 If-~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~~ 151 (183)
T d2fpoa1 115 VF-VDPPFRRGLLEETINLLEDNGWLADEALIYVESEV 151 (183)
T ss_dssp EE-ECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred EE-EcCccccchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 66 5677888888999998887 58999988876543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.31 E-value=1.2e-11 Score=106.71 Aligned_cols=122 Identities=11% Similarity=0.083 Sum_probs=89.2
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+|||+|||+|.+++.+|+. +.+|+++|+ +++++.|++|++..+.. .++.+..-|. ...+....
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~----~~v~~~~~d~----~~~~~~~~ 172 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI----ERVTIKVRDI----SEGFDEKD 172 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG----GGEEEECCCG----GGCCSCCS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc----cCcEEEeccc----cccccccc
Confidence 468999999999999999999874 358999999 89999999999998764 3555444222 12233456
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc-CCeEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK-DFVIGRV 256 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~-~f~v~~i 256 (281)
||.|+. +..+...+++.+.++|||||.+++..+.- +..++.++.+++ +|...++
T Consensus 173 ~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~--~Qv~~~~~~l~~~gF~~i~~ 227 (266)
T d1o54a_ 173 VDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT--NQVQETLKKLQELPFIRIEV 227 (266)
T ss_dssp EEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHSSEEEEEE
T ss_pred eeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCcc--cHHHHHHHHHHHCCceeEEE
Confidence 787653 44566788999999999999987766533 334566777764 7864444
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=6e-12 Score=108.36 Aligned_cols=138 Identities=14% Similarity=0.162 Sum_probs=88.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHH-HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCC----------------------CC-
Q 023543 120 LLHGKKIVELGSGCGLVGCIAA-LLGAQVILTDL-PDRLRLLKKNIENNLRHGDL----------------------RG- 174 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a-~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~----------------------~~- 174 (281)
..+|++|||||||+|+..+..+ +.+.+|+++|+ +.|++.+++++......... ..
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 4688999999999998876544 56668999999 88999999876543211100 00
Q ss_pred ceEEEEEecC--CCC--C-CCcCCCCCcEEEEccccCCC----CcHHHHHHHHHHhhCCCcEEEEEEeeeCh--------
Q 023543 175 SAVVTELTWG--DDP--D-QDLIQPLPDYVLGSDVIYSE----GAVGDLLDTLLQLCGTQTTIFLAGELRND-------- 237 (281)
Q Consensus 175 ~i~~~~l~w~--~~~--~-~~~~~~~fD~Iia~d~iy~~----~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-------- 237 (281)
......+.|. ... . ......+||+|++.-++.+. ..+..+++.+.++|||||.+++....+..
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~ 211 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 211 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcc
Confidence 0011122221 111 1 11223479999999888663 35788999999999999999887654321
Q ss_pred -----hHHHHHHHHHh-cCCeEEEEe
Q 023543 238 -----SVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 238 -----~~~~~fl~~~~-~~f~v~~i~ 257 (281)
-+.+.+.+.+. .||.+..+.
T Consensus 212 ~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 212 LTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 12233444444 489887664
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2.1e-12 Score=108.92 Aligned_cols=104 Identities=15% Similarity=0.075 Sum_probs=75.1
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+|||+|||+|..+..+|++ ..+|+++|+ +++++.+++|++..+.......++.+...| .........+
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD---~~~~~~~~~~ 150 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD---GRMGYAEEAP 150 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC---GGGCCGGGCC
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEee---cccccchhhh
Confidence 357889999999999998888874 458999999 899999999998765431111355555533 2222234568
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
||+|+....+.+. ...+.+.|+|||++++..
T Consensus 151 fD~I~~~~~~~~i------p~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 151 YDAIHVGAAAPVV------PQALIDQLKPGGRLILPV 181 (224)
T ss_dssp EEEEEECSBBSSC------CHHHHHTEEEEEEEEEEE
T ss_pred hhhhhhhcchhhc------CHHHHhhcCCCcEEEEEE
Confidence 9999998877542 245678899999987743
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.26 E-value=2.7e-11 Score=107.07 Aligned_cols=112 Identities=16% Similarity=0.069 Sum_probs=84.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-CcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~~~~~fD 197 (281)
.+|++|||++||+|..|+.++..|+ +|+++|+ +.+++.+++|++.|++. ..++.+...|-.+.... .....+||
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~---~~~~~~i~~d~~~~l~~~~~~~~~fD 219 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD---MANHQLVVMDVFDYFKYARRHHLTYD 219 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC---CTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc---CcceEEEEccHHHHHHHHHhhcCCCC
Confidence 5799999999999999999999888 6999999 88999999999999986 24677777442111110 11246899
Q ss_pred EEEEccccCC---------CCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 198 YVLGSDVIYS---------EGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 198 ~Iia~d~iy~---------~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
+||.-.+-+. ...+..|++.+.++|+|||.++++....
T Consensus 220 ~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 220 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 9987544332 1246789999999999999988876544
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=9.2e-11 Score=100.18 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=65.6
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC---cCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD---LIQPL 195 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~---~~~~~ 195 (281)
+..++||||||+|.+++.+++ .+.+|+++|+ +++++.|++|++.|++. +++.+...+|....-.. ....+
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~----~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS----DLIKVVKVPQKTLLMDALKEESEII 136 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCC----cceeeeeeccHHhhhhhhhhcccCc
Confidence 456999999999999998887 4789999999 89999999999999887 67888777665433221 12457
Q ss_pred CcEEEEccccCC
Q 023543 196 PDYVLGSDVIYS 207 (281)
Q Consensus 196 fD~Iia~d~iy~ 207 (281)
||+|+++.+.|.
T Consensus 137 fD~ivsNPPY~~ 148 (250)
T d2h00a1 137 YDFCMCNPPFFA 148 (250)
T ss_dssp BSEEEECCCCC-
T ss_pred eeEEEecCcccc
Confidence 999999888875
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.26 E-value=1.5e-11 Score=107.98 Aligned_cols=131 Identities=13% Similarity=0.031 Sum_probs=90.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-CCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-QDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~~~~~~~fD~ 198 (281)
.++++||||+||||.+++.++..|++|+++|. +.+++.+++|++.|++. ..++.+..-|..+... ......+||+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~---~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLE---QAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCT---TSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred cCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhccc---CCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 46889999999999999999999999999999 78999999999999886 2356766643211110 0112468999
Q ss_pred EEEccccCC----------CCcHHHHHHHHHHhhCCCcEEEEEEeee---ChhHHHHHHHHHhc--CCeEE
Q 023543 199 VLGSDVIYS----------EGAVGDLLDTLLQLCGTQTTIFLAGELR---NDSVLEYFLEAAMK--DFVIG 254 (281)
Q Consensus 199 Iia~d~iy~----------~~~~~~ll~~l~~ll~~~g~~~l~~~~r---~~~~~~~fl~~~~~--~f~v~ 254 (281)
||.--.-|. ...+..+++.+..+|+|+|.++++.... ....++.++..... +-.++
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 278 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence 986444332 2346778889999999998755543322 23344445544432 44444
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.25 E-value=4.2e-12 Score=106.88 Aligned_cols=96 Identities=16% Similarity=0.099 Sum_probs=72.6
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..+|.+|||+|||+|..+..+|+++.+|+++|+ +++++.+++|...+ .++.+...|-.. ......|||.
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~-------~nv~~~~~d~~~---g~~~~~pfD~ 137 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY-------NNIKLILGDGTL---GYEEEKPYDR 137 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTC-------SSEEEEESCGGG---CCGGGCCEEE
T ss_pred hcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcc-------cccccccCchhh---cchhhhhHHH
Confidence 457889999999999999999999999999999 88899999886543 367666644211 1112468999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|+....+.+ +...+.+.|++||++++-
T Consensus 138 Iiv~~a~~~------ip~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 138 VVVWATAPT------LLCKPYEQLKEGGIMILP 164 (224)
T ss_dssp EEESSBBSS------CCHHHHHTEEEEEEEEEE
T ss_pred HHhhcchhh------hhHHHHHhcCCCCEEEEE
Confidence 998777633 234556789999998764
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.25 E-value=7.4e-11 Score=97.78 Aligned_cols=104 Identities=11% Similarity=0.006 Sum_probs=80.9
Q ss_pred CCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 123 GKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
+..|||||||+|...+.+|+. ...++|+|+ +.++..+.+++..+++. ++.+...|..... ..+.+..+|.|
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-----Nv~~~~~Da~~l~-~~~~~~~~d~v 103 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-----NVKLLNIDADTLT-DVFEPGEVKRV 103 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-----SEEEECCCGGGHH-HHCCTTSCCEE
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-----Cchhcccchhhhh-cccCchhhhcc
Confidence 457999999999988888875 467999999 88999999999998876 7888776533211 22456789988
Q ss_pred EEccccCCCCc--------HHHHHHHHHHhhCCCcEEEEEE
Q 023543 200 LGSDVIYSEGA--------VGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 200 ia~d~iy~~~~--------~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...-+..++.. .+.+++.+.+.|||||.++++.
T Consensus 104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 87665555433 2689999999999999998863
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.23 E-value=2.8e-11 Score=104.06 Aligned_cols=121 Identities=19% Similarity=0.198 Sum_probs=87.7
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+|||+|||+|.+++.+|+. | .+|+++|+ +++++.|++|++..... ...++.+...|. .+..+.+..
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~--~~~nv~~~~~d~---~~~~~~~~~ 168 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ--PPDNWRLVVSDL---ADSELPDGS 168 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS--CCTTEEEECSCG---GGCCCCTTC
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC--CCceEEEEeccc---ccccccCCC
Confidence 357999999999999999999974 4 58999999 89999999999875322 124666666443 233445678
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-c-CCe
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-K-DFV 252 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~-~f~ 252 (281)
||.|+. | ..+....+..+.+.|||||.+++..+.-.+ .++..+.++ + +|.
T Consensus 169 fDaV~l-d----lp~P~~~l~~~~~~LkpGG~lv~~~P~i~Q--v~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 169 VDRAVL-D----MLAPWEVLDAVSRLLVAGGVLMVYVATVTQ--LSRIVEALRAKQCWT 220 (264)
T ss_dssp EEEEEE-E----SSCGGGGHHHHHHHEEEEEEEEEEESSHHH--HHHHHHHHHHHSSBC
T ss_pred cceEEE-e----cCCHHHHHHHHHhccCCCCEEEEEeCccCh--HHHHHHHHHHcCCee
Confidence 998875 3 344567888999999999998666554333 455666665 3 563
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.22 E-value=4.6e-12 Score=103.40 Aligned_cols=109 Identities=21% Similarity=0.214 Sum_probs=84.2
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-CcCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~~~~~f 196 (281)
..+|++||||+||||.+|+.++..|+ +|+++|. +++++.+++|++.++.. .++.+...|..+.... .-...+|
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~----~~~~i~~~D~~~~l~~~~~~~~~f 114 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP----EKFEVRKMDANRALEQFYEEKLQF 114 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG----GGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcc----cccccccccchhhhhhhcccCCCc
Confidence 36899999999999999999999998 5999999 88999999999988765 4677777553221111 0124579
Q ss_pred cEEEEccccCCCCcHHHHHHHHHH--hhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQ--LCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~--ll~~~g~~~l~~~ 233 (281)
|+|+ .|+.|.......++..+.. +|+++|.+++-+.
T Consensus 115 DlIf-lDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 115 DLVL-LDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp EEEE-ECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ceEE-echhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 9765 6777888888888888865 6899998876544
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=5.3e-11 Score=102.62 Aligned_cols=95 Identities=9% Similarity=0.022 Sum_probs=73.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|..+..++.. +.+++++|+ +.+++.++++. .++.+...+ ..+..+.+..||
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~----------~~~~~~~~d---~~~l~~~~~sfD 149 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----------PQVTFCVAS---SHRLPFSDTSMD 149 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----------TTSEEEECC---TTSCSBCTTCEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc----------ccccceeee---hhhccCCCCCEE
Confidence 46789999999999999988886 458999999 88998887642 245555544 334456678899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
+|++.....+ ++.+.++|||||.++++.+..
T Consensus 150 ~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 150 AIIRIYAPCK-------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp EEEEESCCCC-------HHHHHHHEEEEEEEEEEEECT
T ss_pred EEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCC
Confidence 9998776644 466899999999999887643
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.18 E-value=1.9e-11 Score=102.16 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=76.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..+|.+|||+|||||..+..+|++ |.+|+++|. +++++.+++|+...+.. ++.+..-|... ......+||
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~-----nv~~~~gd~~~---g~~~~~pfD 147 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-----NVHVILGDGSK---GFPPKAPYD 147 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCGGG---CCGGGCCEE
T ss_pred cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCc-----eeEEEECcccc---CCcccCcce
Confidence 467889999999999999998875 778999999 88999999999998865 78887755322 222357899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
.|+....+... . ..+.+.|++||++++.
T Consensus 148 ~Iiv~~a~~~i--p----~~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 148 VIIVTAGAPKI--P----EPLIEQLKIGGKLIIP 175 (215)
T ss_dssp EEEECSBBSSC--C----HHHHHTEEEEEEEEEE
T ss_pred eEEeecccccC--C----HHHHHhcCCCCEEEEE
Confidence 99998777432 2 3355678999998654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.17 E-value=2.2e-11 Score=99.27 Aligned_cols=111 Identities=22% Similarity=0.142 Sum_probs=84.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
+.+.+||||.||||.+|+.++.+|+ +|+++|. ..+++.+++|++..+... ....+...+..+.........+||+
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~---~~~~~~~~d~~~~l~~~~~~~~fDl 118 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSS---EQAEVINQSSLDFLKQPQNQPHFDV 118 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCT---TTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccc---cccccccccccccccccccCCcccE
Confidence 6789999999999999999999998 6999999 889999999999876541 2344444322111111223467997
Q ss_pred EEEccccCCCCcHHHHHHHHHH--hhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQ--LCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~--ll~~~g~~~l~~~~r 235 (281)
| -.|+.|.....+.++..+.. +|+++|.+++-...+
T Consensus 119 I-FlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~~ 156 (183)
T d2ifta1 119 V-FLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD 156 (183)
T ss_dssp E-EECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred E-EechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence 6 68888998889999999876 689999888866543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.17 E-value=1.1e-09 Score=90.58 Aligned_cols=104 Identities=15% Similarity=-0.018 Sum_probs=81.3
Q ss_pred CCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 123 GKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
+..|||||||+|-..+.+|+. ...++|+|+ +.++..+.+++..+++. ++.+...+..+. ...+.+..+|.|
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-----Ni~~~~~da~~l-~~~~~~~~~~~i 105 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-----NIKLLWVDGSDL-TDYFEDGEIDRL 105 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-----SEEEEECCSSCG-GGTSCTTCCSEE
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-----cceeeecCHHHH-hhhccCCceehh
Confidence 347999999999888888875 557999999 78899999999998876 788888775432 233566788988
Q ss_pred EEccccCCCCc--------HHHHHHHHHHhhCCCcEEEEEE
Q 023543 200 LGSDVIYSEGA--------VGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 200 ia~d~iy~~~~--------~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...-+--++.. .+.+++.+.++|+|||.++++.
T Consensus 106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 87554443322 3789999999999999998764
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.9e-09 Score=96.21 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=112.9
Q ss_pred EEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHH
Q 023543 80 LSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRL 158 (281)
Q Consensus 80 l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~ 158 (281)
++++.+|++|+.... ..+..|.+++.+.+. ..++.+||||-||+|.+|+.+|+.+.+|+++|. +++++.
T Consensus 180 ~~~~i~p~sFfQ~N~------~~~e~l~~~v~~~~~----~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~ 249 (358)
T d1uwva2 180 LRLTFSPRDFIQVNA------GVNQKMVARALEWLD----VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEK 249 (358)
T ss_dssp EEEECCSSSCCCSBH------HHHHHHHHHHHHHHT----CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHH
T ss_pred EEEEECCchhhccch------hhhhHHHHHHHHhhc----cCCCceEEEecccccccchhccccccEEEeccCcHHHHHH
Confidence 566677877765443 346666666665432 346789999999999999999999999999999 889999
Q ss_pred HHHHHHHhhcCCCCCCceEEEEEecCCCCCC-CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 159 LKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 159 ~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
|++|++.|++. ++.+...+-.+.... .....+||+||.--.= . .. ..+++.+.++ +|..++|+++. +
T Consensus 250 A~~na~~n~i~-----n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR-~-G~-~~~~~~l~~~-~~~~ivYVSCn---p 317 (358)
T d1uwva2 250 GQQNARLNGLQ-----NVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR-A-GA-AGVMQQIIKL-EPIRIVYVSCN---P 317 (358)
T ss_dssp HHHHHHHTTCC-----SEEEEECCTTSCCSSSGGGTTCCSEEEECCCT-T-CC-HHHHHHHHHH-CCSEEEEEESC---H
T ss_pred HHHhHHhcccc-----cceeeecchhhhhhhhhhhhccCceEEeCCCC-c-cH-HHHHHHHHHc-CCCEEEEEeCC---H
Confidence 99999999986 788777554433322 2234678988653322 1 22 3467777664 67788888875 4
Q ss_pred hHHHHHHHHH-hcCCeEEEEecCCCCCCC
Q 023543 238 SVLEYFLEAA-MKDFVIGRVEQTQWHPDY 265 (281)
Q Consensus 238 ~~~~~fl~~~-~~~f~v~~i~~~~~~~~~ 265 (281)
.++.+=+..+ ..+|+++.+.--.+-|.-
T Consensus 318 ~TlaRDl~~l~~~gy~l~~i~~~D~FP~T 346 (358)
T d1uwva2 318 ATLARDSEALLKAGYTIARLAMLDMFPHT 346 (358)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCSTTS
T ss_pred HHHHHHHHHHHHCCCeEeEEEEEecCCCC
Confidence 4433333333 569999999765554443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.7e-10 Score=100.63 Aligned_cols=129 Identities=15% Similarity=0.094 Sum_probs=85.0
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcC------CCCCCceEEEEEecCCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRH------GDLRGSAVVTELTWGDDPDQ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~------~~~~~~i~~~~l~w~~~~~~ 189 (281)
..+|.+|||+|||+|.+++.+|+. ..+|+++|+ +++++.|++|++..+.. .....++.+..-|..+.. .
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~-~ 174 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT-E 174 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc-c
Confidence 468999999999999999999973 348999999 89999999999876422 112356777775543322 1
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc---CCeEEEE
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK---DFVIGRV 256 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~---~f~v~~i 256 (281)
.+...+||.|+. |+. .....+..+.+.|||||++++..+.-. -....++.++. +|...++
T Consensus 175 ~~~~~~fD~V~L-D~p----~P~~~l~~~~~~LKpGG~lv~~~P~i~--Qv~~~~~~l~~~~~~f~~i~~ 237 (324)
T d2b25a1 175 DIKSLTFDAVAL-DML----NPHVTLPVFYPHLKHGGVCAVYVVNIT--QVIELLDGIRTCELALSCEKI 237 (324)
T ss_dssp ------EEEEEE-CSS----STTTTHHHHGGGEEEEEEEEEEESSHH--HHHHHHHHHHHHTCCEEEEEE
T ss_pred ccCCCCcceEee-cCc----CHHHHHHHHHHhccCCCEEEEEeCCHH--HHHHHHHHHHHcCCCceeeEE
Confidence 234567898875 543 234578888999999998776544322 23455665652 5654443
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.05 E-value=7.4e-11 Score=99.10 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=72.7
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc----C----CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL----G----AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD 190 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~----g----~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~ 190 (281)
..++.+|||+|||||..+..++++ | .+|+++|. +++++.+++|+..+........++.+...|-. ...
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~---~~~ 154 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGR---KGY 154 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGG---GCC
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccc---ccc
Confidence 457889999999999998888874 2 48999999 88999999998665322000136777764422 212
Q ss_pred cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 191 LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 191 ~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
....+||.|+....+.... ..+.+.|++||++++.
T Consensus 155 ~~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 155 PPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVP 189 (223)
T ss_dssp GGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEE
T ss_pred ccccceeeEEEEeechhch------HHHHHhcCCCcEEEEE
Confidence 2346899999977774322 3467889999998664
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=6.8e-10 Score=98.31 Aligned_cols=109 Identities=11% Similarity=0.044 Sum_probs=75.6
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcC----CCCCCceEEEEEecCCCCCCCcC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRH----GDLRGSAVVTELTWGDDPDQDLI 192 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~----~~~~~~i~~~~l~w~~~~~~~~~ 192 (281)
..++.+|||||||+|.+.+.+|+ .++ +++|+|+ +.+++.++++++..... .....++.+...|.. +..+.
T Consensus 149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~---~~~~~ 225 (328)
T d1nw3a_ 149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL---SEEWR 225 (328)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT---SHHHH
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc---ccccc
Confidence 35688999999999999998876 344 7999999 88999998877654221 001246777775532 21111
Q ss_pred C--CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 193 Q--PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 193 ~--~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+ ...|+|++.... +...+...+..+.+.|||||+++...
T Consensus 226 ~~~~~advi~~~~~~-f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 226 ERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHHCSEEEECCTT-TCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccCcceEEEEccee-cchHHHHHHHHHHHhCCCCcEEEEec
Confidence 1 124787766544 55667778888889999999987643
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=1.5e-09 Score=98.43 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=74.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cC-CEEEEEec-hhHHHHHHHHHHHhhcCCC-CCCceEEEEEecCCC-CCCCc---
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LG-AQVILTDL-PDRLRLLKKNIENNLRHGD-LRGSAVVTELTWGDD-PDQDL--- 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~-~~~~i~~~~l~w~~~-~~~~~--- 191 (281)
..+|.+|||||||+|.+.+.+|+ .| ++|+|+|+ +.+++.|+++++..+.... ...+.....+..... .....
T Consensus 214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~ 293 (406)
T d1u2za_ 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE 293 (406)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence 46788999999999999888876 45 58999999 8899999999877542100 000111122222221 11110
Q ss_pred CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.-..+|+|+... ..+...+...+..+.+.|||||+++...
T Consensus 294 ~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 294 LIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 113468888654 4456678888899999999999987653
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=5.2e-09 Score=86.49 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=88.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
+++++|+|+|||.|++|+.+|.. ..+|+++|- ..-+..++.-+...++. ++.+..-+..+. ..+.+||
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-----nv~v~~~R~E~~----~~~~~fD 134 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-----NIEPVQSRVEEF----PSEPPFD 134 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-----SEEEEECCTTTS----CCCSCEE
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-----ceeeeccchhhh----ccccccc
Confidence 46789999999999999999974 458999999 77788888877777765 677777544322 2346899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEec
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQ 258 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~ 258 (281)
+|++-.+ ..+..+++.+..+++++|.+++--.....+. ++.+..+|.+..+..
T Consensus 135 ~V~sRA~----~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eE----l~~~~~~~~~~~~~~ 187 (207)
T d1jsxa_ 135 GVISRAF----ASLNDMVSWCHHLPGEQGRFYALKGQMPEDE----IALLPEEYQVESVVK 187 (207)
T ss_dssp EEECSCS----SSHHHHHHHHTTSEEEEEEEEEEESSCCHHH----HHTSCTTEEEEEEEE
T ss_pred eehhhhh----cCHHHHHHHHHHhcCCCcEEEEECCCCHHHH----HHhhhcCCEEEEEEE
Confidence 9988655 3578899999999999998765543333322 234456787766543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=5.2e-09 Score=87.33 Aligned_cols=130 Identities=13% Similarity=0.054 Sum_probs=94.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC---cCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD---LIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~---~~~ 193 (281)
.+.++|||||||+|..++.+|.. +.+|+.+|. ++..+.+++|++..+.. .++++...+..+..+.. ...
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~----~~i~~~~Gda~e~l~~~~~~~~~ 133 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE----HKIDLRLKPALETLDELLAAGEA 133 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT----TTEEEEESCHHHHHHHHHHTTCT
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc----ceEEEEEeehhhcchhhhhhccc
Confidence 57899999999999999999872 568999999 88899999999999876 56777764432211111 124
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh------------hHHHHHHHHHhc--CCeEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND------------SVLEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~------------~~~~~fl~~~~~--~f~v~~i~ 257 (281)
.+||+|..- .........++.+.++|+|||.+++-...... ..++.|.+.+.. .|....++
T Consensus 134 ~~fD~ifiD---~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llP 208 (219)
T d2avda1 134 GTFDVAVVD---ADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLP 208 (219)
T ss_dssp TCEEEEEEC---SCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEEC
T ss_pred CCccEEEEe---CCHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEee
Confidence 679988863 23566788888899999999998876544321 235667777764 56655554
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.81 E-value=2.3e-08 Score=84.17 Aligned_cols=131 Identities=14% Similarity=0.083 Sum_probs=90.7
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+++++|+|+|.|.+|+.+|.. ..+|+++|- ..-+..++.-+...++. ++.+..-..++.....-...+||+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-----n~~i~~~R~E~~~~~~~~~~~~D~ 144 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-----NTTFCHDRAETFGQRKDVRESYDI 144 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-----SEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-----CcEEEeehhhhccccccccccceE
Confidence 4679999999999999999963 568999999 66677777777777665 566655333221111112468999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEecCCC
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQTQW 261 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~~~~ 261 (281)
|++-.+ ..+..++.....+++++|.+++--.....+.++..-..+. .++.+..+....+
T Consensus 145 v~sRAv----a~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~l 204 (239)
T d1xdza_ 145 VTARAV----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKL 204 (239)
T ss_dssp EEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred EEEhhh----hCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEeC
Confidence 998655 3578999999999999998766544445555555444444 3777777654433
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.77 E-value=5e-09 Score=87.13 Aligned_cols=127 Identities=18% Similarity=0.142 Sum_probs=82.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC---CcCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ---DLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~---~~~~ 193 (281)
.+.++|||+|||+|..++.+|+. +.+|+++|. +++++.+++|++..++. +++.+...+..+..+. ....
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~----~~i~l~~Gd~~e~l~~l~~~~~~ 130 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ----DKVTILNGASQDLIPQLKKKYDV 130 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG----GGEEEEESCHHHHGGGHHHHSCC
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC----ccceeeeccccccccchhhcccc
Confidence 46789999999999999999863 679999999 88999999999998876 5788877554322111 1123
Q ss_pred CCCcEEEEccccCCCCcHHH--HHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh--cCCeEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGD--LLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM--KDFVIGRV 256 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~--ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~--~~f~v~~i 256 (281)
.+||+|.. | ++...... .+....++|+|||++++-...+... ..+++.++ ..|.....
T Consensus 131 ~~~D~ifi-D--~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~--~~~~~~vr~~~~~~~~~~ 192 (214)
T d2cl5a1 131 DTLDMVFL-D--HWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT--PDFLAYVRGSSSFECTHY 192 (214)
T ss_dssp CCEEEEEE-C--SCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCC--HHHHHHHHHCTTEEEEEE
T ss_pred cccceeee-c--ccccccccHHHHHHHhCccCCCcEEEEeCcCCCCC--hHHHHHHhccCceeehhh
Confidence 57898875 3 22233222 3444456799999765543333321 22444444 35554444
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.74 E-value=6.4e-08 Score=81.80 Aligned_cols=96 Identities=13% Similarity=0.018 Sum_probs=74.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..++|||||||+|..++.+++. +.+++..|++++++. ... ..++.+...|+- +. .++.|++
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~~----~~ri~~~~gd~~---~~---~p~~D~~ 143 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN-------APP----LSGIEHVGGDMF---AS---VPQGDAM 143 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT-------CCC----CTTEEEEECCTT---TC---CCCEEEE
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhc-------cCC----CCCeEEecCCcc---cc---cccceEE
Confidence 3479999999999999888874 558999999877532 111 257888875543 22 2466999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEee
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+.+.++|+..+ ...+++.+++.|+|||++++....
T Consensus 144 ~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v 180 (244)
T d1fp1d2 144 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI 180 (244)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 99999998655 668899999999999999998764
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.62 E-value=3.4e-08 Score=82.63 Aligned_cols=106 Identities=15% Similarity=0.079 Sum_probs=81.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHH---cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC----cC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL---LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD----LI 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~---~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~----~~ 192 (281)
.+.++|||+|+++|..++.+|. .+++|+.+|. ++..+.+++|++..+.. +++.+...+..+..+.. ..
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~----~~i~~~~g~a~~~L~~l~~~~~~ 133 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD----HKIDFREGPALPVLDEMIKDEKN 133 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHCGGG
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc----cceeeeehHHHHHHHHHHhcccc
Confidence 5778999999999999999886 2568999999 88899999999998876 57887775543221111 12
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+.+||+|.. |. +...+...++.+.++|+|||.+++-..
T Consensus 134 ~~~fD~iFi-Da--~k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 134 HGSYDFIFV-DA--DKDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp TTCBSEEEE-CS--CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred CCceeEEEe-cc--chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 468999886 43 346678889999999999999876543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.57 E-value=6.7e-07 Score=78.25 Aligned_cols=148 Identities=11% Similarity=-0.039 Sum_probs=92.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc----C---CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL----G---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~----g---~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~ 192 (281)
.++.+|||.|||+|.+.+.+... + .+++|+|+ +.++..++.|+..++.. ......++- . ...
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~------~~~~~~d~~---~-~~~ 185 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK------MTLLHQDGL---A-NLL 185 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC------CEEEESCTT---S-CCC
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh------hhhhccccc---c-ccc
Confidence 35668999999999887776531 1 25999999 88899999999888654 333332321 1 223
Q ss_pred CCCCcEEEEccccCCC------------------CcHHHHHHHHHHhhCCCcEEEEEEeee--ChhHHHHHHHHHhcCCe
Q 023543 193 QPLPDYVLGSDVIYSE------------------GAVGDLLDTLLQLCGTQTTIFLAGELR--NDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~------------------~~~~~ll~~l~~ll~~~g~~~l~~~~r--~~~~~~~fl~~~~~~f~ 252 (281)
..+||+|++..+.-.. .....++..+.++|+++|++.+..+.. .....+.+.+.+.+.+.
T Consensus 186 ~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~ 265 (328)
T d2f8la1 186 VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH 265 (328)
T ss_dssp CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCc
Confidence 4689999987764211 124457888999999999877666532 11122334455556677
Q ss_pred EEEEecCCCCCCCC--CCcEEEEEEEecC
Q 023543 253 IGRVEQTQWHPDYC--SPRVVVYILVKKL 279 (281)
Q Consensus 253 v~~i~~~~~~~~~~--~~~~~i~~~~~k~ 279 (281)
+..+-.-.- ..|. .....|+.+.|+.
T Consensus 266 i~~ii~lp~-~~F~~~~~~t~ilvl~K~~ 293 (328)
T d2f8la1 266 IEGIIKLPE-TLFKSEQARKSILILEKAD 293 (328)
T ss_dssp EEEEEECCG-GGSCC-CCCEEEEEEEECC
T ss_pred EEEEEECCc-cccCCCCCCeEEEEEECCC
Confidence 666633211 1233 3355677776653
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.44 E-value=5.6e-07 Score=75.83 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=73.1
Q ss_pred CCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 123 GKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
.++|||+|||+|..++.+++. ..+++..|++++++.+. . ..++.+...|.. +. .+++|+++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~-------~----~~rv~~~~gD~f---~~---~p~aD~~~ 143 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS-------G----SNNLTYVGGDMF---TS---IPNADAVL 143 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-------C----BTTEEEEECCTT---TC---CCCCSEEE
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCc-------c----cCceEEEecCcc---cC---CCCCcEEE
Confidence 478999999999999888874 56899999988754321 1 257888885543 22 25789999
Q ss_pred EccccCCCCc--HHHHHHHHHHhhCCC---cEEEEEEee
Q 023543 201 GSDVIYSEGA--VGDLLDTLLQLCGTQ---TTIFLAGEL 234 (281)
Q Consensus 201 a~d~iy~~~~--~~~ll~~l~~ll~~~---g~~~l~~~~ 234 (281)
...++|+..+ ...+++.+++.|+|| |++++....
T Consensus 144 l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~ 182 (244)
T d1fp2a2 144 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 182 (244)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred EEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence 9999998655 467899999999998 777777643
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.34 E-value=3e-07 Score=77.47 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=71.4
Q ss_pred CCeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 123 GKKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
.++|||||||+|..++.+++. +.+++..|++.+++.++ ...++.+...|+.+. + |..|+++
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~-----------~~~r~~~~~~d~~~~----~--P~ad~~~ 144 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAP-----------SYPGVEHVGGDMFVS----I--PKADAVF 144 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCC-----------CCTTEEEEECCTTTC----C--CCCSCEE
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcc-----------cCCceEEeccccccc----C--CCcceEE
Confidence 478999999999999988874 56899999987753221 125677877655332 1 3467778
Q ss_pred EccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 201 GSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 201 a~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
...++++.. ....+++.+++.|+|+|.+++....
T Consensus 145 l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 145 MKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp CSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence 888888754 4778999999999999998887644
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=5.1e-07 Score=78.84 Aligned_cols=133 Identities=11% Similarity=0.038 Sum_probs=83.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
...++||.||.|.|.....+.+. ..+|+++|+ +++++.+++.............++++..-|+..... -.+.+||
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~--~~~~~yD 153 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE--RTEERYD 153 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH--HCCCCEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhh--hcCCccc
Confidence 35689999999999887777664 358999999 889999998874422111112467777655432111 1346799
Q ss_pred EEEE--ccccCCCC-----cHHHHHHHHHHhhCCCcEEEEEEe---eeChhHHHHHHHHHhcCCeEEE
Q 023543 198 YVLG--SDVIYSEG-----AVGDLLDTLLQLCGTQTTIFLAGE---LRNDSVLEYFLEAAMKDFVIGR 255 (281)
Q Consensus 198 ~Iia--~d~iy~~~-----~~~~ll~~l~~ll~~~g~~~l~~~---~r~~~~~~~fl~~~~~~f~v~~ 255 (281)
+|+. .|...... .-..+++.+++.|+|+|++++-.. ...........+.++..|....
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~ 221 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVR 221 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEE
Confidence 9994 33332211 126799999999999998765332 2233333444566667775333
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.24 E-value=4.5e-07 Score=73.66 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=66.5
Q ss_pred CCeEEEECCCcCH----HHHHHHHc----C--CEEEEEec-hhHHHHHHHHHHHhhc--------------CCCC-----
Q 023543 123 GKKIVELGSGCGL----VGCIAALL----G--AQVILTDL-PDRLRLLKKNIENNLR--------------HGDL----- 172 (281)
Q Consensus 123 ~~~VLELGcGtG~----~~i~~a~~----g--~~V~~tD~-~~~l~~~~~N~~~n~~--------------~~~~----- 172 (281)
.-+|++.|||||- +++.+... + .+|++||+ +.+++.|++.+-.... ....
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~ 104 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 104 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence 4499999999994 34434321 1 26999999 7889988753311100 0000
Q ss_pred -------CCceEEEEEecCCCCCC-CcCCCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 173 -------RGSAVVTELTWGDDPDQ-DLIQPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 173 -------~~~i~~~~l~w~~~~~~-~~~~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...+.+...+ ..+. .....+||+|+|..++.+ ++....+++.+.+.|+|||.+++..
T Consensus 105 ~~~~~~~~~~v~~~~~~---~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 105 VRVRQELANYVEFSSVN---LLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp EEECHHHHTTEEEEECC---TTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eehHHHHHHHHHHhhhh---ccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 0112222221 1111 112367999999888754 4566899999999999999887763
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.21 E-value=4.9e-07 Score=73.49 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=77.7
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC--CCcCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD--QDLIQP 194 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~--~~~~~~ 194 (281)
..++..+||.+||+|-.+..++. .+.+|+++|. ++|++.++++....+ .++.+...++.+... ..+...
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~------~r~~~~~~~f~~~~~~~~~~~~~ 94 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKVSYREADFLLKTLGIE 94 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEECCGGGHHHHHHHTTCS
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc------ccccchhHHHhhHHHHHHHcCCC
Confidence 35788999999999977776665 3568999999 899999999887753 356666654432110 012236
Q ss_pred CCcEEEEccccCC----------CCcHHHHHHHHHHhhCCCcEEEEEE-eeeChhHHHHHHH
Q 023543 195 LPDYVLGSDVIYS----------EGAVGDLLDTLLQLCGTQTTIFLAG-ELRNDSVLEYFLE 245 (281)
Q Consensus 195 ~fD~Iia~d~iy~----------~~~~~~ll~~l~~ll~~~g~~~l~~-~~r~~~~~~~fl~ 245 (281)
+||.|+.- +-+. .......+....++|+++|.+.+.. ....+...+.|+.
T Consensus 95 ~vdgIl~D-lGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~ 155 (192)
T d1m6ya2 95 KVDGILMD-LGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFR 155 (192)
T ss_dssp CEEEEEEE-CSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred Ccceeeec-cchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHh
Confidence 78877742 2111 2335677888888999999865443 3222334444543
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.08 E-value=6.2e-06 Score=68.86 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=54.5
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..++.+|||+|||+|.+...++..+++|+++|+ +.+++.++++...+ .++.+...|.- ...+.......
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~-------~n~~i~~~D~l---~~~~~~~~~~~ 88 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH-------DNFQVLNKDIL---QFKFPKNQSYK 88 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC-------CSEEEECCCGG---GCCCCSSCCCE
T ss_pred CCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcc-------cchhhhhhhhh---hccccccccce
Confidence 357899999999999999999999999999999 77788888765332 35666664432 22222222233
Q ss_pred EEEccccCCCC
Q 023543 199 VLGSDVIYSEG 209 (281)
Q Consensus 199 Iia~d~iy~~~ 209 (281)
|+ +..-|+.+
T Consensus 89 vv-~NLPYnIs 98 (235)
T d1qama_ 89 IF-GNIPYNIS 98 (235)
T ss_dssp EE-EECCGGGH
T ss_pred ee-eeehhhhh
Confidence 44 55666643
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.06 E-value=2.5e-05 Score=63.48 Aligned_cols=106 Identities=13% Similarity=0.055 Sum_probs=63.7
Q ss_pred HHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH---cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE
Q 023543 106 LGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL---LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (281)
Q Consensus 106 la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~---~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l 181 (281)
+++++.+.+. ..++.+|||.|||+|.+.+.+.. ...+++++|+ +.++..++ ...+...
T Consensus 7 i~~~m~~l~~----~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~--------------~~~~~~~ 68 (223)
T d2ih2a1 7 VVDFMVSLAE----APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP--------------WAEGILA 68 (223)
T ss_dssp HHHHHHHHCC----CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT--------------TEEEEES
T ss_pred HHHHHHHhcC----CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc--------------cceeeee
Confidence 4555555432 34678999999999977665553 2357999999 55543322 2223332
Q ss_pred ecCCCCCCCcCCCCCcEEEEccccCC-----------------------------CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 182 TWGDDPDQDLIQPLPDYVLGSDVIYS-----------------------------EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 182 ~w~~~~~~~~~~~~fD~Iia~d~iy~-----------------------------~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++... .....||+|++....-. ......++....++|+++|.+.+..
T Consensus 69 ~~~~~----~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 69 DFLLW----EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp CGGGC----CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ehhcc----ccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 32211 12356888887544211 0123466777888999999876665
Q ss_pred e
Q 023543 233 E 233 (281)
Q Consensus 233 ~ 233 (281)
+
T Consensus 145 p 145 (223)
T d2ih2a1 145 P 145 (223)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.03 E-value=3.2e-06 Score=75.41 Aligned_cols=108 Identities=21% Similarity=0.202 Sum_probs=75.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCC----------CCceEEEEEecCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDL----------RGSAVVTELTWGDDP 187 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~----------~~~i~~~~l~w~~~~ 187 (281)
+++++|||..||||+-|+-.|+ .|+ +|++.|+ +++++.+++|++.|+..... ...+.+...|+....
T Consensus 44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 4788999999999999997666 455 7999999 88999999999999865210 112233332221000
Q ss_pred CCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 188 DQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 188 ~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
......||+|. -|. | ....+++....+.++.+|.+.++...
T Consensus 124 --~~~~~~fDvID-iDP-f--Gs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 124 --AERHRYFHFID-LDP-F--GSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp --HHSTTCEEEEE-ECC-S--SCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred --HhhcCcCCccc-CCC-C--CCcHHHHHHHHHHhccCCEEEEEecC
Confidence 00235699655 455 2 33467999999999999999988653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.99 E-value=7.4e-06 Score=70.01 Aligned_cols=131 Identities=13% Similarity=-0.012 Sum_probs=82.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhc-----CCCCCCceEEEEEecCCCCCCCcCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLR-----HGDLRGSAVVTELTWGDDPDQDLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~-----~~~~~~~i~~~~l~w~~~~~~~~~~ 193 (281)
.+.++||-||+|.|.....+.+.. .+|+++|+ +++++.+++-...+.. ......++++..-|..... -.+
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l---~~~ 147 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI---KNN 147 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH---HHC
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH---hcc
Confidence 467899999999998877766644 47999999 8899999875432210 0011246666664421111 124
Q ss_pred CCCcEEEEccccCCCCc-----HHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeEEE
Q 023543 194 PLPDYVLGSDVIYSEGA-----VGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVIGR 255 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~-----~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v~~ 255 (281)
.+||+|+. |+...... -..+++.+++.|+|+|++++-... .....+...+..+++-|....
T Consensus 148 ~~yDvIi~-D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~ 215 (276)
T d1mjfa_ 148 RGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVY 215 (276)
T ss_dssp CCEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEE
T ss_pred CCCCEEEE-eCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCCeeE
Confidence 68999985 33322111 267899999999999987654322 234455666677777675333
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.93 E-value=0.00011 Score=66.16 Aligned_cols=170 Identities=12% Similarity=0.065 Sum_probs=102.7
Q ss_pred CceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---------------CCEEEEEec-hhHHHHH
Q 023543 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---------------GAQVILTDL-PDRLRLL 159 (281)
Q Consensus 96 G~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---------------g~~V~~tD~-~~~l~~~ 159 (281)
|...-|. .+++++...++ ...+.+|+|-.||+|.+-+.+.+. ...+.+.|+ +.+..++
T Consensus 142 G~f~TP~--~Iv~~mv~ll~----~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la 215 (425)
T d2okca1 142 GQYFTPR--PLIQAMVDCIN----PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA 215 (425)
T ss_dssp GGGCCCH--HHHHHHHHHHC----CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred hhhccch--hhhHhhheecc----CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHH
Confidence 4444443 34566665432 245789999999999777666542 124899999 8889999
Q ss_pred HHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-----------------CCcHHHHHHHHHHhh
Q 023543 160 KKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS-----------------EGAVGDLLDTLLQLC 222 (281)
Q Consensus 160 ~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~-----------------~~~~~~ll~~l~~ll 222 (281)
+.|+..++... ....... ++.... ....+||+||++.+.-. ....-.++..+.++|
T Consensus 216 ~~n~~l~g~~~---~~~~i~~---~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~L 288 (425)
T d2okca1 216 SMNLYLHGIGT---DRSPIVC---EDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLML 288 (425)
T ss_dssp HHHHHHTTCCS---SCCSEEE---CCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHE
T ss_pred HhhhhhcCCcc---ccceeec---Cchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhc
Confidence 99999887652 1222222 222221 23467999998766521 112346888999999
Q ss_pred CCCcEEEEEEeee---ChhHHHHHHHHHhcCCeEEEEecCCCCCCCCC--CcEEEEEEEecC
Q 023543 223 GTQTTIFLAGELR---NDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCS--PRVVVYILVKKL 279 (281)
Q Consensus 223 ~~~g~~~l~~~~r---~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~--~~~~i~~~~~k~ 279 (281)
+++|++.+..+.. +....+.+.+.+.+.+.+..|-.-. ...|.. -...|+.+.|++
T Consensus 289 k~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~~i~aIi~LP-~~~F~~t~v~t~Ilil~K~k 349 (425)
T d2okca1 289 KTGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNLHTILRLP-TGIFYAQGVKANVLFFSKGQ 349 (425)
T ss_dssp EEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHEEEEEEEECC-SSSSSSTTCCEEEEEEEESS
T ss_pred CCCCeEEEEechHHhhhhhhHHHHHHHHHHhcchhHhhcCC-cccccCCCCCeEEEEEECCC
Confidence 9999876665531 2222344555566666666664321 122332 345677777653
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=8.4e-05 Score=63.74 Aligned_cols=76 Identities=14% Similarity=0.081 Sum_probs=54.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHH---cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL---LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~---~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+|||++||.|.=++.+|. ...+|++.|+ +..++.+++|+++.+.. ++.+...|............+|
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-----~~~~~~~d~~~~~~~~~~~~~f 167 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-----CCELAEEDFLAVSPSDPRYHEV 167 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCGGGSCTTCGGGTTE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-----ceeeeehhhhhhccccccccee
Confidence 5788999999999976665554 2457999999 77899999999999876 6776665543222211122568
Q ss_pred cEEEE
Q 023543 197 DYVLG 201 (281)
Q Consensus 197 D~Iia 201 (281)
|.|+.
T Consensus 168 D~VL~ 172 (293)
T d2b9ea1 168 HYILL 172 (293)
T ss_dssp EEEEE
T ss_pred eEEee
Confidence 98886
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.86 E-value=1.8e-05 Score=68.15 Aligned_cols=150 Identities=14% Similarity=0.045 Sum_probs=91.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
...++||-||.|.|.+.-.+.+. ..+|+++|+ +++++.+++-...+.... ...++.+..-|...... -...+||
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~-~d~rv~v~~~Da~~~l~--~~~~~yD 164 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF-DDPRAEIVIANGAEYVR--KFKNEFD 164 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHGG--GCSSCEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccc-cCCCcEEEhhhHHHHHh--cCCCCCC
Confidence 35689999999999877777764 357999999 889999998766543211 12467766644322111 1346799
Q ss_pred EEEE--ccccCCCC---cHHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCCcE
Q 023543 198 YVLG--SDVIYSEG---AVGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCSPRV 270 (281)
Q Consensus 198 ~Iia--~d~iy~~~---~~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~~~~ 270 (281)
+|+. .|....+. .-..+++.+++.|+|+|++++-... .+...+...++.+.+-|....... ..-|.|.+ +.
T Consensus 165 vIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~-~~vPtyp~-G~ 242 (295)
T d1inla_ 165 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYL-GFMTTYPS-GM 242 (295)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEE-EECTTSTT-SE
T ss_pred EEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEE-eeeceecC-cc
Confidence 9995 22211111 1378999999999999987654332 334455666777777676444432 22344533 33
Q ss_pred EEEEE
Q 023543 271 VVYIL 275 (281)
Q Consensus 271 ~i~~~ 275 (281)
.-|.+
T Consensus 243 w~f~~ 247 (295)
T d1inla_ 243 WSYTF 247 (295)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 33443
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.86 E-value=2.3e-05 Score=66.81 Aligned_cols=133 Identities=9% Similarity=-0.029 Sum_probs=88.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-C-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
...++||-||-|.|.....+.+. + .+|+++|+ +++++.+++....+... ....++.+..-|...... -...+||
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~-~~d~r~~i~~~D~~~~l~--~~~~~yD 150 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFMHIA--KSENQYD 150 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHHHHH--TCCSCEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccc-ccCCCeEEEechHHHHHh--hcCCCCC
Confidence 35689999999999888887774 3 48999999 88999999877655422 123466666633211111 1246799
Q ss_pred EEEE--ccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEe--eeChhHHHHHHHHHhcCCeEEEE
Q 023543 198 YVLG--SDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGE--LRNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 198 ~Iia--~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~--~r~~~~~~~fl~~~~~~f~v~~i 256 (281)
+|+. .|...... .-..+.+.+++.|+|+|+++.-.. ......+...+..+++-|.....
T Consensus 151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~ 215 (274)
T d1iy9a_ 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKL 215 (274)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEE
Confidence 9986 22221111 147899999999999998765332 23455666777888877864433
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.82 E-value=1.2e-06 Score=73.90 Aligned_cols=78 Identities=13% Similarity=0.163 Sum_probs=52.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..+++.+.+|+++|+ +.+++.++++... ..++.+...|. .+..+.+.+++.|
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~-------~~n~~ii~~D~---l~~~~~~~~~~~v 97 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQDI---LQFQFPNKQRYKI 97 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT-------CSEEEECCSCC---TTTTCCCSSEEEE
T ss_pred CCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh-------ccchhhhhhhh---hccccccceeeeE
Confidence 46789999999999999999999999999999 6676666544322 13555555433 3333444444555
Q ss_pred EEccccCCCC
Q 023543 200 LGSDVIYSEG 209 (281)
Q Consensus 200 ia~d~iy~~~ 209 (281)
+ +...|+.+
T Consensus 98 v-~NLPY~Is 106 (245)
T d1yuba_ 98 V-GNIPYHLS 106 (245)
T ss_dssp E-EECCSSSC
T ss_pred e-eeeehhhh
Confidence 5 55556644
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=4.5e-05 Score=64.96 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=57.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|+|+|.+...+++.+++|+++++ +.+++.++++...+... .++.+...|+-.. . .+.++.|
T Consensus 20 ~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~----~~~~~i~~D~l~~---~--~~~~~~v 90 (278)
T d1zq9a1 20 RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVA----SKLQVLVGDVLKT---D--LPFFDTC 90 (278)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTG----GGEEEEESCTTTS---C--CCCCSEE
T ss_pred CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccc----cchhhhHHHHhhh---h--hhhhhhh
Confidence 46789999999999999999999999999999 77889998887665332 4677777665322 1 1345667
Q ss_pred EEccccCC
Q 023543 200 LGSDVIYS 207 (281)
Q Consensus 200 ia~d~iy~ 207 (281)
|++ .-|+
T Consensus 91 V~N-LPY~ 97 (278)
T d1zq9a1 91 VAN-LPYQ 97 (278)
T ss_dssp EEE-CCGG
T ss_pred hcc-hHHH
Confidence 765 4444
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=0.00012 Score=62.42 Aligned_cols=137 Identities=20% Similarity=0.140 Sum_probs=85.8
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCce
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
-.+|.+.+..|. ..+|.+|||++||.|-=++.++.++ .+|++.|. +..++.+++|+++.+.. ++
T Consensus 88 D~sS~l~~~~L~--------~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-----~~ 154 (284)
T d1sqga2 88 DASAQGCMTWLA--------PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-----AT 154 (284)
T ss_dssp CHHHHTHHHHHC--------CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-----CE
T ss_pred cccccccccccC--------ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-----ce
Confidence 445555555543 3578899999999996666666543 57999999 77899999999998875 33
Q ss_pred EEEEEecCCCCCC-CcCCCCCcEEEE------ccccCC-C--------Cc-------HHHHHHHHHHhhCCCcEEEEE-E
Q 023543 177 VVTELTWGDDPDQ-DLIQPLPDYVLG------SDVIYS-E--------GA-------VGDLLDTLLQLCGTQTTIFLA-G 232 (281)
Q Consensus 177 ~~~~l~w~~~~~~-~~~~~~fD~Iia------~d~iy~-~--------~~-------~~~ll~~l~~ll~~~g~~~l~-~ 232 (281)
.+... +.... ......||.|+. ..++-. + .. ...++....+++++||.++.+ +
T Consensus 155 ~~~~~---~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC 231 (284)
T d1sqga2 155 VKQGD---GRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 231 (284)
T ss_dssp EEECC---TTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred eeecc---ccccchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 33321 11111 122357999986 222211 1 11 455777777788999975544 4
Q ss_pred ee---eChhHHHHHHHHHhcCCeE
Q 023543 233 EL---RNDSVLEYFLEAAMKDFVI 253 (281)
Q Consensus 233 ~~---r~~~~~~~fl~~~~~~f~v 253 (281)
.. -+..+++.|++.. .+|.+
T Consensus 232 S~~~~ENE~vv~~~l~~~-~~~~~ 254 (284)
T d1sqga2 232 SVLPEENSLQIKAFLQRT-ADAEL 254 (284)
T ss_dssp CCCGGGTHHHHHHHHHHC-TTCEE
T ss_pred cCchhhCHHHHHHHHHhC-CCcEE
Confidence 33 3456777777653 24543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.75 E-value=0.0002 Score=61.83 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=76.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHH---cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL---LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~---~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+|||++||.|.=++.++. ....+++.|. +..+..+++|+.+.+.. ++.+.. .+..........|
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-----~i~~~~---~d~~~~~~~~~~f 186 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-----NVILFH---SSSLHIGELNVEF 186 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-----SEEEES---SCGGGGGGGCCCE
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-----cccccc---ccccccccccccc
Confidence 5789999999999965555554 2347999999 77899999999998875 443332 2222222335679
Q ss_pred cEEEE------ccccCC-C---------------CcHHHHHHHHHHhhCCCcEEE-EEEee---eChhHHHHHHHH
Q 023543 197 DYVLG------SDVIYS-E---------------GAVGDLLDTLLQLCGTQTTIF-LAGEL---RNDSVLEYFLEA 246 (281)
Q Consensus 197 D~Iia------~d~iy~-~---------------~~~~~ll~~l~~ll~~~g~~~-l~~~~---r~~~~~~~fl~~ 246 (281)
|.|+. ..++.. + .....++....++++|||.++ -++.. -|..+++.|++.
T Consensus 187 D~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~ 262 (313)
T d1ixka_ 187 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN 262 (313)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred cEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhc
Confidence 98886 111111 1 114557777788889999754 44443 455677777754
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=5.2e-05 Score=64.85 Aligned_cols=131 Identities=11% Similarity=-0.001 Sum_probs=84.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..++||=||-|.|.+.-.+.+. ..+|+++|+ +++++.+++-...+... ....++.+..-|...... -...+||+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~-~~d~rv~i~~~Da~~~l~--~~~~~yDv 154 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG-YSSSKLTLHVGDGFEFMK--QNQDAFDV 154 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHHH--TCSSCEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccc-cCCCCceEEEccHHHHHh--cCCCCCCE
Confidence 5689999999999888877774 347999999 88999999876554321 113567766644221111 12467999
Q ss_pred EEEccccCC---CC--cHHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeEEEE
Q 023543 199 VLGSDVIYS---EG--AVGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 199 Iia~d~iy~---~~--~~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v~~i 256 (281)
|+. |+.-. .. .-..+++.+++.|+|+|++++-... .....++.....+...|.....
T Consensus 155 Ii~-D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~ 218 (285)
T d2o07a1 155 IIT-DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAY 218 (285)
T ss_dssp EEE-ECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEE
T ss_pred EEE-cCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCeeeE
Confidence 986 33211 11 1346789999999999997664432 2344556666667667765444
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.58 E-value=2.5e-05 Score=67.66 Aligned_cols=132 Identities=11% Similarity=-0.041 Sum_probs=80.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
...++||-||-|.|.+...+.+.. .+|+++|+ +++++.+++-...+... -...++.+..-|...... ....+||
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~-~~dprv~i~i~Da~~~l~--~~~~~yD 181 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCG-FSHPKLDLFCGDGFEFLK--NHKNEFD 181 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGG-GGCTTEEEECSCHHHHHH--HCTTCEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccc-cCCCCeEEEEchHHHHHH--hCCCCCC
Confidence 356899999999998888777743 58999999 88999999876443211 112455555433211110 1346799
Q ss_pred EEEE--ccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEe--eeChhHHHHHHHHHhcCCeEEE
Q 023543 198 YVLG--SDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGE--LRNDSVLEYFLEAAMKDFVIGR 255 (281)
Q Consensus 198 ~Iia--~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~--~r~~~~~~~fl~~~~~~f~v~~ 255 (281)
+||. .|...... .-..+++.+++.|+|+|+++.-.. ......+......++..|....
T Consensus 182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~ 245 (312)
T d2b2ca1 182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVT 245 (312)
T ss_dssp EEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEE
Confidence 9996 22221111 136789999999999998765432 2234455556666666675433
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.54 E-value=0.00016 Score=61.90 Aligned_cols=128 Identities=12% Similarity=-0.006 Sum_probs=82.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-C-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
+.++||=||-|.|.+...+.+. + .+|+++|+ +++++.+++-...+... ....++.+..-|...... .....+||+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~-~~~~r~~i~~~Da~~~l~-~~~~~~yDv 157 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIG-YEDPRVNLVIGDGVAFLK-NAAEGSYDA 157 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGSTTEEEEESCHHHHHH-TSCTTCEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhcc-ccCCCcEEEEccHHHHHh-hccccCccE
Confidence 5679999999999888877774 3 47999999 88999999866443321 112466666543211110 112358999
Q ss_pred EEEccccC---CCC--cHHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCe
Q 023543 199 VLGSDVIY---SEG--AVGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 199 Iia~d~iy---~~~--~~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~ 252 (281)
|+. |+.- ... .-..+++.+++.|+|+|++++-... .+...+...++.+++-|.
T Consensus 158 Ii~-D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~ 217 (290)
T d1xj5a_ 158 VIV-DSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFK 217 (290)
T ss_dssp EEE-CCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred EEE-cCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcc
Confidence 996 3321 111 1377999999999999998764432 234555666677766553
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=0.00033 Score=64.70 Aligned_cols=165 Identities=13% Similarity=0.032 Sum_probs=97.3
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--------------------CCEEEEEec-hhHHHHHHHHH
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--------------------GAQVILTDL-PDRLRLLKKNI 163 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--------------------g~~V~~tD~-~~~l~~~~~N~ 163 (281)
.+++++.+.+. ...+.+|+|-.||+|.+-+.+.+. ...+++.|+ +.+..+++-|+
T Consensus 151 ~Iv~~mv~ll~----~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl 226 (524)
T d2ar0a1 151 PLIKTIIHLLK----PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 226 (524)
T ss_dssp HHHHHHHHHHC----CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred chhHhhhhccc----CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 34566665432 245779999999999776655441 114899999 88899999999
Q ss_pred HHhhcCCCCCCceEEEEEecCCCCCCC-cCCCCCcEEEEccccCCC--------------CcHHHHHHHHHHhhCCCcEE
Q 023543 164 ENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLPDYVLGSDVIYSE--------------GAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 164 ~~n~~~~~~~~~i~~~~l~w~~~~~~~-~~~~~fD~Iia~d~iy~~--------------~~~~~ll~~l~~ll~~~g~~ 228 (281)
..++......... .+.+++..... ....+||+|+++.+.-.. ...-.++..+.++|++||++
T Consensus 227 ~l~~~~~~i~~~~---~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ 303 (524)
T d2ar0a1 227 LLHDIEGNLDHGG---AIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA 303 (524)
T ss_dssp HTTTCCCBGGGTB---SEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred Hhhcccccccccc---hhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcE
Confidence 8876541100000 11112221111 123679999987665221 12345888999999999987
Q ss_pred EEEEee----eChhHHHHHHHHHhcCCeEEEEecCCCCCCCCC--CcEEEEEEEec
Q 023543 229 FLAGEL----RNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCS--PRVVVYILVKK 278 (281)
Q Consensus 229 ~l~~~~----r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~--~~~~i~~~~~k 278 (281)
.+..+. +... ...+.+.+.+.+.+..|-.-. ...|.. -...|+.+.|+
T Consensus 304 aiIlP~~~Lf~~~~-~~~iR~~Ll~~~~i~aII~LP-~~~F~~t~i~t~Il~l~K~ 357 (524)
T d2ar0a1 304 AVVVPDNVLFEGGK-GTDIRRDLMDKCHLHTILRLP-TGIFYAQGVKTNVLFFTKG 357 (524)
T ss_dssp EEEEEHHHHHCCTH-HHHHHHHHHHHEEEEEEEECC-SSCSSSCSCCEEEEEEEEB
T ss_pred EEEEehHHhhhhhh-hHHHHHHHHHcCCceEEEECC-CCcCCCCCCCeEEEEEECC
Confidence 666542 3322 233555555666766664322 123332 35567777764
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.0012 Score=52.13 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=73.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-----CCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-----QDL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-----~~~ 191 (281)
..++.+||||||+.|-...+++.. + .+|+++|+..+ .. ...+.+...+..+... ...
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------~~-----i~~~~~~~~d~~~~~~~~~~~~~~ 84 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------DP-----IVGVDFLQGDFRDELVMKALLERV 84 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------CC-----CTTEEEEESCTTSHHHHHHHHHHH
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------cc-----cCCceEeecccccchhhhhhhhhc
Confidence 346889999999999998887763 2 46999998332 01 1345555544322110 012
Q ss_pred CCCCCcEEEEccccCCC-----------CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEE
Q 023543 192 IQPLPDYVLGSDVIYSE-----------GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~~-----------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i 256 (281)
.+.++|+|++-...-.. ......+..+.++|++||.+++=.- +... .+.++..+...|+-..+
T Consensus 85 ~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F-~g~~-~~~l~~~l~~~F~~V~~ 158 (180)
T d1ej0a_ 85 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF-QGEG-FDEYLREIRSLFTKVKV 158 (180)
T ss_dssp TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-SSTT-HHHHHHHHHHHEEEEEE
T ss_pred cCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe-cCcc-HHHHHHHHHhhcCEEEE
Confidence 34679998863332211 1244556667778899999876543 3333 45688888888874333
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.00013 Score=61.09 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=37.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKN 162 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N 162 (281)
.++..|||+|||+|.+...+++.+.+|+++|+ +.+++.+++.
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~ 62 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTH 62 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTC
T ss_pred CCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHH
Confidence 46889999999999999999999999999999 7778888764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.10 E-value=0.0028 Score=48.86 Aligned_cols=97 Identities=25% Similarity=0.332 Sum_probs=62.4
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-------
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------- 189 (281)
..+|.+||=+|||. |+..+.+++ .|++|+++|. ++.++.+++. +.. . .+.+......
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga~------~---~~~~~~~~~~~~~~~~~ 90 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GAD------V---TLVVDPAKEEESSIIER 90 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS------E---EEECCTTTSCHHHHHHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CCc------E---EEeccccccccchhhhh
Confidence 35788999999884 666665555 7899999999 6778877752 211 1 1111111110
Q ss_pred --CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 190 --DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 190 --~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
......+|+|+-+--- +..+....++++++|++++.....
T Consensus 91 ~~~~~g~g~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 91 IRSAIGDLPNVTIDCSGN------EKCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp HHHHSSSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECSCCS
T ss_pred hhcccccCCceeeecCCC------hHHHHHHHHHHhcCCceEEEecCC
Confidence 0123568988765433 567788888999999988776443
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.96 E-value=0.00057 Score=56.95 Aligned_cols=97 Identities=18% Similarity=0.278 Sum_probs=63.2
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCC----CCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDL----RGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~----~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|||+=||.|.-++.+|..|++|++++. +.+..+++.++++....... ..++++..-|-.+.... ..++||+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~--~~~~~Dv 167 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD--ITPRPQV 167 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT--CSSCCSE
T ss_pred CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc--cCCCCCE
Confidence 48999999999999999999999999999 66677777777665432110 12566666432111111 2357997
Q ss_pred EEEccccCCCC----cHHHHHHHHHHhhC
Q 023543 199 VLGSDVIYSEG----AVGDLLDTLLQLCG 223 (281)
Q Consensus 199 Iia~d~iy~~~----~~~~ll~~l~~ll~ 223 (281)
|. -|.+|... ....-++.++.++.
T Consensus 168 IY-lDPMFp~~~Ksa~~kk~m~~l~~l~~ 195 (250)
T d2oyra1 168 VY-LDPMFPHKQKSALVKKEMRVFQSLVG 195 (250)
T ss_dssp EE-ECCCCCCCCC-----HHHHHHHHHSC
T ss_pred EE-ECCCCccccccccchhHHHHHHhhcc
Confidence 77 58888643 34445555666554
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.92 E-value=0.00064 Score=53.96 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=72.5
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--CcCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DLIQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~~~~~f 196 (281)
..+|..++|..+|.|--+..+...+.+|+++|. +++++.+++. . ..++.+....+.+.... .....++
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~-----~----~~~~~~~~~~f~~~~~~l~~~~~~~v 86 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-----H----LPGLTVVQGNFRHLKRHLAALGVERV 86 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----C----CTTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc-----c----ccceeEeehHHHHHHHHHHHcCCCcc
Confidence 367899999999999777666677789999999 8888877642 1 13566666443321110 1123568
Q ss_pred cEEEEccccCCC----------CcHHHHHHHHHHhhCCCcEEEEEE-eeeChhHHHHHHH
Q 023543 197 DYVLGSDVIYSE----------GAVGDLLDTLLQLCGTQTTIFLAG-ELRNDSVLEYFLE 245 (281)
Q Consensus 197 D~Iia~d~iy~~----------~~~~~ll~~l~~ll~~~g~~~l~~-~~r~~~~~~~fl~ 245 (281)
|.|+. |+=+.. ......+.....+++++|.+.+.. +...+..+..|+.
T Consensus 87 dgIl~-DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~ 145 (182)
T d1wg8a2 87 DGILA-DLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLR 145 (182)
T ss_dssp EEEEE-ECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHH
T ss_pred CEEEE-EccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHh
Confidence 87775 332221 224557778888999999866443 3333334455554
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.88 E-value=0.002 Score=52.91 Aligned_cols=102 Identities=16% Similarity=0.025 Sum_probs=60.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHH----c--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-CCcC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL----L--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-QDLI 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~----~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~~~~ 192 (281)
.+.++|||+|++.|..++.++. . .++|+++|+ +...... .+. ..++.+...+..+... ..+.
T Consensus 79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~-----~~~I~~i~gDs~~~~~~~~l~ 148 (232)
T d2bm8a1 79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASD-----MENITLHQGDCSDLTTFEHLR 148 (232)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGG-----CTTEEEEECCSSCSGGGGGGS
T ss_pred hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hcc-----ccceeeeecccccHHHHHHHH
Confidence 5788999999999976665553 2 458999999 4432111 111 2467777755322111 1123
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+.++|+|+- |--|.....-.-+ .+..+|++||.+++-+..
T Consensus 149 ~~~~dlIfI-D~~H~~~~v~~~~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 149 EMAHPLIFI-DNAHANTFNIMKW-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp SSCSSEEEE-ESSCSSHHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred hcCCCEEEE-cCCcchHHHHHHH-HHhcccCcCCEEEEEcCC
Confidence 446777665 3334433222222 246799999998887653
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.61 E-value=0.0016 Score=53.89 Aligned_cols=142 Identities=18% Similarity=0.025 Sum_probs=75.0
Q ss_pred eecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCC
Q 023543 98 VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRG 174 (281)
Q Consensus 98 ~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~ 174 (281)
..=.++..|.+...+. ...++.+|+|||||.|-.+-.++... ..|.++|+ -+.-+ .-.....++ .
T Consensus 47 ~~SR~~~Kl~~~~~~~-----~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~------~ 114 (257)
T d2p41a1 47 AVSRGSAKLRWFVERN-----LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYG------W 114 (257)
T ss_dssp CSSTHHHHHHHHHHTT-----SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTT------G
T ss_pred CcchHHHHHHHHHHhc-----CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCccccccc------c
Confidence 3345677775544432 34567799999999999999988754 46888887 22100 000000000 1
Q ss_pred ceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCC-------cHHHHHHHHHHhhCCCcEEEEEEeee-ChhHHHHHHHH
Q 023543 175 SAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEG-------AVGDLLDTLLQLCGTQTTIFLAGELR-NDSVLEYFLEA 246 (281)
Q Consensus 175 ~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~-------~~~~ll~~l~~ll~~~g~~~l~~~~r-~~~~~~~fl~~ 246 (281)
++ ..+.-+.+. ..+...+.|+|+| |+--+.. -.-.+++.+.+.|+|||.+++=--.- .+++ ..-++.
T Consensus 115 ni--~~~~~~~dv-~~l~~~~~D~vlc-Dm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v-~e~le~ 189 (257)
T d2p41a1 115 NL--VRLQSGVDV-FFIPPERCDTLLC-DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSV-IEKMEA 189 (257)
T ss_dssp GG--EEEECSCCT-TTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHH-HHHHHH
T ss_pred cc--ccchhhhhH-HhcCCCcCCEEEe-eCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHH-HHHHHH
Confidence 11 122212221 2234567898775 4322211 12357788888999999754421112 2344 335566
Q ss_pred HhcCCeEEEE
Q 023543 247 AMKDFVIGRV 256 (281)
Q Consensus 247 ~~~~f~v~~i 256 (281)
+++.|.-..+
T Consensus 190 lq~~fgg~lV 199 (257)
T d2p41a1 190 LQRKHGGALV 199 (257)
T ss_dssp HHHHHCCEEE
T ss_pred HHHHhCCeeE
Confidence 6665643333
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.0082 Score=46.25 Aligned_cols=97 Identities=24% Similarity=0.320 Sum_probs=62.4
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
..+|.+||=+|||. |...+.+++ .|+ +|+++|. ++.++.+++. +.. .+...+ +....
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~-------~~~~~~--~~~~~~~~~~~ 90 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD-------LVLQIS--KESPQEIARKV 90 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS-------EEEECS--SCCHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc-------cccccc--ccccccccccc
Confidence 35688999999986 666555555 687 7999999 7777777642 322 111111 11000
Q ss_pred -CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 190 -DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 190 -~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
...+..+|+|+-+--. +..++...++++++|++++.....
T Consensus 91 ~~~~g~g~Dvvid~~G~------~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 91 EGQLGCKPEVTIECTGA------EASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp HHHHTSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred cccCCCCceEEEeccCC------chhHHHHHHHhcCCCEEEEEecCC
Confidence 0123478988865443 678888899999999988776543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.0017 Score=50.25 Aligned_cols=95 Identities=21% Similarity=0.202 Sum_probs=57.5
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..+|.+||=+|||. |++++.+++ .|++++++|. ++.++.+++ .+.. ..++..+..........+
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~----lGad---------~~i~~~~~~~~~~~~~~~ 94 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGAD---------EVVNSRNADEMAAHLKSF 94 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCS---------EEEETTCHHHHHTTTTCE
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc----cCCc---------EEEECchhhHHHHhcCCC
Confidence 45788999999875 666666665 7899889998 666666653 3322 112222211111123568
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+++-+-- .. ..++...++++++|++++...
T Consensus 95 D~vid~~g--~~----~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 95 DFILNTVA--AP----HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp EEEEECCS--SC----CCHHHHHTTEEEEEEEEECCC
T ss_pred ceeeeeee--cc----hhHHHHHHHHhcCCEEEEecc
Confidence 98775432 22 234455678899998877654
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.24 E-value=0.0032 Score=49.24 Aligned_cols=94 Identities=28% Similarity=0.318 Sum_probs=58.3
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-------
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD------- 188 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~------- 188 (281)
..+|.+||=+|||. |...+.+|+ .|+ +|+++|. ++.++.+++. +.. ..++-.+...
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---------~vi~~~~~~~~~~~~~i 92 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---------LTLNRRETSVEERRKAI 92 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce---------EEEeccccchHHHHHHH
Confidence 35789999999984 666666665 687 7999999 7778877642 222 1112111110
Q ss_pred CCc-CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 189 QDL-IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 189 ~~~-~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
... ....+|+|+-+ .-. +..++...++++++|++++..
T Consensus 93 ~~~~~~~g~Dvvid~--vG~----~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 93 MDITHGRGADFILEA--TGD----SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp HHHTTTSCEEEEEEC--SSC----TTHHHHHHHHEEEEEEEEECC
T ss_pred HHhhCCCCceEEeec--CCc----hhHHHHHHHHhcCCCEEEEEe
Confidence 001 12458988744 322 345667778899999987664
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.21 E-value=0.0059 Score=49.69 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=46.7
Q ss_pred HHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHH
Q 023543 104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIE 164 (281)
Q Consensus 104 ~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~ 164 (281)
+.|.+++.... ..+|..|||--||+|..++++.++|-+.+++|+ ++-++.|+++++
T Consensus 199 ~~L~~~lI~~~-----s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHh-----CCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence 44566655432 257899999999999999999999999999999 788999998875
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.08 E-value=0.0025 Score=49.63 Aligned_cols=97 Identities=23% Similarity=0.269 Sum_probs=62.6
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+..+|+=||+|. |+-++..|+ +|++|++.|. .+.++.++.-...+ +.....+- ...... -...|
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~---------~~~~~~~~-~~l~~~--~~~aD 97 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR---------VELLYSNS-AEIETA--VAEAD 97 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG---------SEEEECCH-HHHHHH--HHTCS
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc---------ceeehhhh-hhHHHh--hccCc
Confidence 4678999999996 777776665 8999999999 77777665433222 22222100 000001 13579
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
+||++-.+-......-+-+.+-+.+|||..++
T Consensus 98 ivI~aalipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 98 LLIGAVLVPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp EEEECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred EEEEeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence 99998887665544445567777889988764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.87 E-value=0.011 Score=48.76 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHh
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENN 166 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n 166 (281)
-+.|.+++.... ..+|..|||--||+|..++++.++|.+.+++|+ ++..+.+++++...
T Consensus 193 P~~L~~~~I~~~-----s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 193 PAAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CHHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred chhHHHHHHHhh-----cCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 344566665531 257899999999999999999999999999999 78899999888754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.86 E-value=0.0006 Score=53.55 Aligned_cols=95 Identities=20% Similarity=0.169 Sum_probs=59.8
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC----Cc
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ----DL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~----~~ 191 (281)
..+|.+||=+|||. |+.++.+++ .|+ +|+++|. ++.++.+++ .+.. ..++..+.... ..
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~---------~~i~~~~~~~~~~v~~~ 91 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGAT---------DILNYKNGHIEDQVMKL 91 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCS---------EEECGGGSCHHHHHHHH
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCcc---------ccccccchhHHHHHHHH
Confidence 45788999999986 777777776 676 6999999 666777763 2222 11222111100 11
Q ss_pred C-CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 192 I-QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 192 ~-~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
. ...+|+|+-+--. +..++...++++|+|.+++...
T Consensus 92 t~g~G~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 92 TNGKGVDRVIMAGGG------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp TTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred hhccCcceEEEccCC------HHHHHHHHHHHhcCCEEEEEee
Confidence 1 2458988764332 3456777788899999877653
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.69 E-value=0.0054 Score=47.58 Aligned_cols=97 Identities=24% Similarity=0.283 Sum_probs=60.5
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC--CCcCC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD--QDLIQ 193 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~--~~~~~ 193 (281)
..+|.+||=+|||. |..++.+++ .|+ .|+.+|. ++.++.+++. +.. .+...+-.+..+ ..+.+
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~-------~~i~~~~~~~~~~i~~~t~ 94 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT-------HVINSKTQDPVAAIKEITD 94 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS-------EEEETTTSCHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe-------EEEeCCCcCHHHHHHHHcC
Confidence 45788999999975 555555554 566 5788898 6667777642 322 122211000000 01234
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
..||+|+-+--. +..++...++++++|++.+...
T Consensus 95 gg~D~vid~~G~------~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 95 GGVNFALESTGS------PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp SCEEEEEECSCC------HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCcEEEEcCCc------HHHHHHHHhcccCceEEEEEee
Confidence 578988865443 6788888999999999877653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.66 E-value=0.041 Score=42.51 Aligned_cols=97 Identities=20% Similarity=0.215 Sum_probs=63.1
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
..+|.+||=+|||. |+.++.+++ .|+ +|+++|. ++.++.+++ .+.. .+ ++.....+.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~-------~~--i~~~~~~~~~~~~~~ 92 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT-------DC--LNPRELDKPVQDVIT 92 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS-------EE--ECGGGCSSCHHHHHH
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC-------cc--cCCccchhhhhhhHh
Confidence 45788999999997 888887776 677 6999999 666776664 2222 11 111111110
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCC-cEEEEEEeee
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQ-TTIFLAGELR 235 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~-g~~~l~~~~r 235 (281)
......+|+++-+--. +..+....+.++++ |.+++.....
T Consensus 93 ~~~~~G~d~vie~~G~------~~~~~~a~~~~~~g~G~~v~vG~~~ 133 (174)
T d1e3ia2 93 ELTAGGVDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVVGAKV 133 (174)
T ss_dssp HHHTSCBSEEEESSCC------HHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred hhhcCCCcEEEEeccc------chHHHHHHHHhhcCCeEEEecCCCC
Confidence 1124578988765433 77788888888886 8887776443
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.64 E-value=0.0058 Score=51.30 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=46.0
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHh
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENN 166 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n 166 (281)
.|.+++.... ..+|..|||--||+|..++++.++|.+.+++|+ ++.++.+++.+..+
T Consensus 238 ~L~~rlI~~~-----s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 238 KLPEFFIRML-----TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp HHHHHHHHHH-----CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred HHHHHhhhhc-----ccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence 4555555431 257899999999999999999999999999999 78899888765543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.0015 Score=50.78 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=58.3
Q ss_pred ccCCCeEEEECC-C-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CC----C
Q 023543 120 LLHGKKIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQ----D 190 (281)
Q Consensus 120 ~~~~~~VLELGc-G-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~----~ 190 (281)
..+|.+||=.|+ | .|..++.+|+ .|++|++++. ++.++.+++ .+.. .+ ++..+.. .. .
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~-------~v--i~~~~~~~~~~i~~~ 92 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH-------EV--FNHREVNYIDKIKKY 92 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS-------EE--EETTSTTHHHHHHHH
T ss_pred CCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc-------cc--cccccccHHHHhhhh
Confidence 357889999997 3 3666666665 7899999988 656666653 3432 11 2222111 00 1
Q ss_pred cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 ~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
....++|+|+.+-- .+.++...++++++|+++...
T Consensus 93 t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 93 VGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp HCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred hccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEEe
Confidence 12456898886421 456777788999999987653
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.00 E-value=0.028 Score=42.60 Aligned_cols=95 Identities=16% Similarity=0.090 Sum_probs=57.6
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-Cc--CC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DL--IQ 193 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~--~~ 193 (281)
..+|.+||=.|||. |...+.+++ .|++|+++|. ++.++.+++ .+.. ...+..+.... .+ ..
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga~---------~~~~~~~~~~~~~~~~~~ 91 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---------LVVNPLKEDAAKFMKEKV 91 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---------EEECTTTSCHHHHHHHHH
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCcc---------eecccccchhhhhccccc
Confidence 35788999999986 666665555 6889999999 667776654 3332 12222211100 00 01
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+.+|.++-.... ...+....++++++|.+++...
T Consensus 92 ~~~~~~v~~~~~------~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 92 GGVHAAVVTAVS------KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp SSEEEEEESSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCceEEeecCC------HHHHHHHHHHhccCCceEeccc
Confidence 234444433222 6678888899999999887653
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.93 E-value=0.66 Score=38.02 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=45.4
Q ss_pred eEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 125 KIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
+||||-||.|-+++.+-..|.+ +.++|+ +.+.+..+.|... .+..-|..+..... -+..|+++++
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~-----------~~~~~Di~~~~~~~--~~~~dll~~g 68 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA-----------KLIKGDISKISSDE--FPKCDGIIGG 68 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCS-----------EEEESCTTTSCGGG--SCCCSEEEEC
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC-----------CCccCChhhCCHhH--cccccEEeec
Confidence 6999999999888887778988 669999 7777777777321 12232332221111 2568999986
Q ss_pred ccc
Q 023543 203 DVI 205 (281)
Q Consensus 203 d~i 205 (281)
-..
T Consensus 69 ~PC 71 (324)
T d1dcta_ 69 PPC 71 (324)
T ss_dssp CCC
T ss_pred ccc
Confidence 554
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=94.82 E-value=0.024 Score=46.70 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=68.4
Q ss_pred CCeEEEECCCcCHHHHHHHHcC------------------------------------------CEEEEEec-hhHHHHH
Q 023543 123 GKKIVELGSGCGLVGCIAALLG------------------------------------------AQVILTDL-PDRLRLL 159 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g------------------------------------------~~V~~tD~-~~~l~~~ 159 (281)
+..++|--||+|.+.|.+|... .++++.|+ +++++.+
T Consensus 51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A 130 (249)
T d1o9ga_ 51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 130 (249)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence 4479999999999999877631 12567888 6777777
Q ss_pred ---HHHHHHhhcCCCCCCceEEEEEecCCCCCC--CcCCCCCcEEEEccccCCC----------CcHHHHHHHHHHhhCC
Q 023543 160 ---KKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DLIQPLPDYVLGSDVIYSE----------GAVGDLLDTLLQLCGT 224 (281)
Q Consensus 160 ---~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~~~~~fD~Iia~d~iy~~----------~~~~~ll~~l~~ll~~ 224 (281)
+.|++..++. ..+.+...|+.+..+. ......+++||++-. |-+ +.+..+...+.+.+..
T Consensus 131 ~~~r~n~~~Agl~----~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP-YGERl~~~~~~~~~~~~~~~~~l~~~~p~ 205 (249)
T d1o9ga_ 131 RRLRERLTAEGGA----LPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP-YGERTHWEGQVPGQPVAGLLRSLASALPA 205 (249)
T ss_dssp HHHHHHHHHTTSS----CCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC-GGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHcCCC----ceeeeeecchhccCcchhccCCCCCCEEEeCCC-ccccccccccchHHHHHHHHHHHHccCCC
Confidence 4577777766 5677777665322111 012344677776544 431 2367777778888866
Q ss_pred CcEEEEEEe
Q 023543 225 QTTIFLAGE 233 (281)
Q Consensus 225 ~g~~~l~~~ 233 (281)
...++++..
T Consensus 206 ~s~~~it~~ 214 (249)
T d1o9ga_ 206 HAVIAVTDR 214 (249)
T ss_dssp TCEEEEEES
T ss_pred CcEEEEeCc
Confidence 666666654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.092 Score=42.94 Aligned_cols=84 Identities=11% Similarity=0.082 Sum_probs=55.9
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-----
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD----- 190 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~----- 190 (281)
.++||.||=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+.. .++.+...|..+..+..
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~----~~~~~~~~Dls~~~~v~~~v~~ 82 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYP----GTLIPYRCDLSNEEDILSMFSA 82 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCS----SEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC----ceEEEEEccCCCHHHHHHHHHH
Confidence 4899999999998874 33445568999999999 67777777666665433 46677776655422110
Q ss_pred c--CCCCCcEEEEccccCC
Q 023543 191 L--IQPLPDYVLGSDVIYS 207 (281)
Q Consensus 191 ~--~~~~fD~Iia~d~iy~ 207 (281)
. ...++|++|.+--...
T Consensus 83 ~~~~~g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 83 IRSQHSGVDICINNAGLAR 101 (257)
T ss_dssp HHHHHCCCSEEEECCCCCC
T ss_pred HHHhcCCCCEEEecccccC
Confidence 0 1256899988655443
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.74 E-value=0.016 Score=44.42 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=58.9
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-CcCCCC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~~~~~ 195 (281)
..+|.+||-+|||. |+.++.+++ .|++|+++|. ++.++.+++ .+.+ .+ ++..+..+. ......
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~----lGa~-------~~--i~~~~~~~~~~~~~~~ 91 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK----MGAD-------HY--IATLEEGDWGEKYFDT 91 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCS-------EE--EEGGGTSCHHHHSCSC
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc----cCCc-------EE--eeccchHHHHHhhhcc
Confidence 45789999999984 777766665 7999999999 677877764 3322 11 122111111 112357
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+.+...-.... +....++++++|++++..
T Consensus 92 ~d~vi~~~~~~~~~~----~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 92 FDLIVVCASSLTDID----FNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EEEEEECCSCSTTCC----TTTGGGGEEEEEEEEECC
T ss_pred cceEEEEecCCccch----HHHHHHHhhccceEEEec
Confidence 898886533222111 334567789999887764
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.61 E-value=0.015 Score=45.67 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=60.8
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCC--CCCceEE-------EEEecCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGD--LRGSAVV-------TELTWGDDPD 188 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~--~~~~i~~-------~~l~w~~~~~ 188 (281)
++..+||=||+|. |+-++..|+ +|++|++.|. ++.++.++...... +... ....... ..-+|.....
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~-i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKF-ITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEE-CCC-----------------------CCHH
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcce-EEEeccccccccccccchhhcCHHHHHHHH
Confidence 5677999999996 777776665 8999999999 77777766432111 1000 0000000 0000000000
Q ss_pred CCcC--CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 189 QDLI--QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 189 ~~~~--~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
..+. -...|+||.+-.+-......-+-+.+-+.+|||..++
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 0000 1357999998887665544445566777889988764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.32 E-value=0.082 Score=40.60 Aligned_cols=97 Identities=15% Similarity=0.085 Sum_probs=57.3
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-C---CCc
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-D---QDL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~---~~~ 191 (281)
..+|.+||=+|||. |+.++.+++ .|+ +|+++|. ++.++.+++ .+.. .+....-.+.. . ...
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~-------~~i~~~~~d~~~~~~~~~~ 93 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT-------ECLNPKDYDKPIYEVICEK 93 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS-------EEECGGGCSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCc-------EEEcCCCchhHHHHHHHHh
Confidence 46789999999986 666666665 675 7999999 777888874 3322 11211111110 0 112
Q ss_pred CCCCCcEEEEccccCCCCcHHHHHHHHHHhh-CCCcEEEEEEe
Q 023543 192 IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLC-GTQTTIFLAGE 233 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll-~~~g~~~l~~~ 233 (281)
.+..+|+|+-+--. ...+......+ +++|.+++...
T Consensus 94 ~~~G~d~vid~~g~------~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 94 TNGGVDYAVECAGR------IETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp TTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred cCCCCcEEEEcCCC------chHHHHHHHHHHHhcCceEEEEE
Confidence 34578887754332 45555555555 45688776653
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.19 Score=42.01 Aligned_cols=40 Identities=25% Similarity=0.172 Sum_probs=32.2
Q ss_pred CeEEEECCCcCHHHHHHHHcCC--E-EEEEec-hhHHHHHHHHH
Q 023543 124 KKIVELGSGCGLVGCIAALLGA--Q-VILTDL-PDRLRLLKKNI 163 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~--~-V~~tD~-~~~l~~~~~N~ 163 (281)
.+|+||-||+|-.++.+...|. + |.++|+ +.+++..+.|.
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~ 46 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF 46 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC
Confidence 4799999999987777767675 5 679999 78888877773
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.76 E-value=0.039 Score=47.11 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=34.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CC-EEEEEec-hhHHHHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GA-QVILTDL-PDRLRLLKKNI 163 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~-~V~~tD~-~~~l~~~~~N~ 163 (281)
.++.+|||+|.|.|.++..+... ++ +|++++. +..++.++...
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~ 87 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF 87 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc
Confidence 35679999999999999888765 43 7999999 66778777543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.39 E-value=0.063 Score=40.97 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=58.9
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC----CcC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ----DLI 192 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~----~~~ 192 (281)
.+|.+||=+|||. |...+.+++ .|+ .|+++|. ++.++.+++. +.. .+ ++..++... ...
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga~-------~~--i~~~~~~~~~~~~~~~ 97 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD-------HV--VDARRDPVKQVMELTR 97 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS-------EE--EETTSCHHHHHHHHTT
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----ccc-------ee--ecCcccHHHHHHHhhC
Confidence 5688999999986 666665554 565 6899999 6667777632 221 11 222211100 012
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
...+|+|+-+--- ...++...++++++|++++...
T Consensus 98 ~~g~d~vid~~g~------~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 98 GRGVNVAMDFVGS------QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp TCCEEEEEESSCC------HHHHHHGGGGEEEEEEEEECCC
T ss_pred CCCceEEEEecCc------chHHHHHHHHHhCCCEEEEEeC
Confidence 3458877765443 5677888889999999887653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.89 E-value=0.068 Score=41.98 Aligned_cols=99 Identities=27% Similarity=0.292 Sum_probs=61.5
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----C
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-----D 190 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-----~ 190 (281)
..+|.+||-+|||. |+.++.+++ .|+ +|+++|. ++.++.+++. +.. .+ .+-.+ .+. .
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~-------~~--~~~~~-~~~~~~i~~ 88 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE-------IA--DLSLD-TPLHEQIAA 88 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE-------EE--ETTSS-SCHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc-------EE--EeCCC-cCHHHHHHH
Confidence 46789999999987 666666665 566 7999999 7778877743 211 11 11000 000 0
Q ss_pred c-CCCCCcEEEEcccc---------CCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 L-IQPLPDYVLGSDVI---------YSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 ~-~~~~fD~Iia~d~i---------y~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+ .+..+|+++-+--. .........++...++++|+|++.+..
T Consensus 89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 1 23467887743211 112224568889999999999987765
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=92.88 E-value=0.11 Score=44.75 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=64.4
Q ss_pred CeEEEECCCcCHHHHHHHH------------cC------CEEEEEechhH-HHHHHHHHHHhhcCCCCCCceEEEEEecC
Q 023543 124 KKIVELGSGCGLVGCIAAL------------LG------AQVILTDLPDR-LRLLKKNIENNLRHGDLRGSAVVTELTWG 184 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~------------~g------~~V~~tD~~~~-l~~~~~N~~~n~~~~~~~~~i~~~~l~w~ 184 (281)
-+|.|+||.+|..++.+.. .+ .+|...|+|.- ...+=+++...... ..++ +...--+
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~---~~~~-f~~gvpG 128 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV---DGVC-FINGVPG 128 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC---TTCE-EEEEEES
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccC---CCCe-EEEecCC
Confidence 4799999999976642211 11 15999999432 22222222211111 1223 2222224
Q ss_pred CCCCCCcCCCCCcEEEEccccCCCC---------------------------------cHHHHHHHHHHhhCCCcEEEEE
Q 023543 185 DDPDQDLIQPLPDYVLGSDVIYSEG---------------------------------AVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 185 ~~~~~~~~~~~fD~Iia~d~iy~~~---------------------------------~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
......++..+.+++.++-.+||-+ ++..+++.-++=|.|||++++.
T Consensus 129 SFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred chhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4445556667788888877776621 2556778878888999999888
Q ss_pred EeeeC
Q 023543 232 GELRN 236 (281)
Q Consensus 232 ~~~r~ 236 (281)
...|.
T Consensus 209 ~~gr~ 213 (359)
T d1m6ex_ 209 ILGRR 213 (359)
T ss_dssp EEECS
T ss_pred EeccC
Confidence 76664
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.59 E-value=0.022 Score=43.89 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=54.2
Q ss_pred ccCCCeEEEECC-Cc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGS-GC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGc-Gt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|++||=.|+ |. |..++.+|+ .|++|++++. ++.++.+++ .+.+ ..++..+..........
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~---------~~i~~~~~~~~~~~~~g 91 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---------EAATYAEVPERAKAWGG 91 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---------EEEEGGGHHHHHHHTTS
T ss_pred CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccc---------eeeehhhhhhhhhcccc
Confidence 457899999985 32 566666665 6999999998 666666653 3332 11222221111112356
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+-+ . - .. +....++++++|++++..
T Consensus 92 ~D~v~d~--~-G-~~----~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 92 LDLVLEV--R-G-KE----VEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp EEEEEEC--S-C-TT----HHHHHTTEEEEEEEEEC-
T ss_pred ccccccc--c-c-hh----HHHHHHHHhcCCcEEEEe
Confidence 8988753 2 1 22 345567889999877653
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.48 E-value=0.38 Score=36.17 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=56.6
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
..+|.+||=.|||. |..++.+++ .|+ .|+++|. ++.++.+++ .+.. ..++..+..+.
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa~---------~~i~~~~~~~~~~~~~~ 92 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT---------ECINPQDFSKPIQEVLI 92 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS---------EEECGGGCSSCHHHHHH
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCCc---------EEEeCCchhhHHHHHHH
Confidence 45789999999983 444554444 675 6999999 667777664 3322 11222111111
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
...+..+|+|+-+--- ..+++....++++++.+.+.
T Consensus 93 ~~~~~g~D~vid~~G~------~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 93 EMTDGGVDYSFECIGN------VKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEE
T ss_pred HHcCCCCcEeeecCCC------HHHHHHHHHhhcCCceeEEE
Confidence 1124568988865332 66788888889988665444
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=92.39 E-value=0.079 Score=41.26 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=50.1
Q ss_pred cccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 119 LLLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 119 ~~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
..++||+||=.|++.|+ ++..+++.|++|++++. .+.++.+.+.+..+.. +.+...|-.+.....-.-.
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFK-------VNVTAAETADDASRAEAVK 91 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHT-------CCCEEEECCSHHHHHHHTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccc-------hhhhhhhcccHHHHHHHhc
Confidence 35899999999977663 34456668999999999 6777777777766532 2234444322111100124
Q ss_pred CCcEEEEcccc
Q 023543 195 LPDYVLGSDVI 205 (281)
Q Consensus 195 ~fD~Iia~d~i 205 (281)
..|+++.+--+
T Consensus 92 ~iDilin~Ag~ 102 (191)
T d1luaa1 92 GAHFVFTAGAI 102 (191)
T ss_dssp TCSEEEECCCT
T ss_pred CcCeeeecCcc
Confidence 67888876443
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=92.38 E-value=0.11 Score=43.55 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=36.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNI 163 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~ 163 (281)
..+.+||||-||.|-.++.+.+.|.+ |.++|+ +.+++..+.|.
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~ 53 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF 53 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHC
Confidence 46779999999999888888888988 677999 78888888875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.20 E-value=0.1 Score=39.41 Aligned_cols=94 Identities=20% Similarity=0.175 Sum_probs=56.0
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-Cc--CC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DL--IQ 193 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~--~~ 193 (281)
..+|.+||=+|||. |+..+.+++ .|++|+++|. ++.++.+++ .+.. . .++..+.... .+ ..
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~----~Ga~-------~--~i~~~~~~~~~~~~~~~ 91 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK----LGAS-------L--TVNARQEDPVEAIQRDI 91 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS-------E--EEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc----cCcc-------c--cccccchhHHHHHHHhh
Confidence 35688999999885 666666665 6889999999 677777653 3322 1 1222111100 00 11
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
..+|.++-+..- ...+....++++++|++++..
T Consensus 92 ~g~~~~i~~~~~------~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 92 GGAHGVLVTAVS------NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp SSEEEEEECCSC------HHHHHHHHTTEEEEEEEEECC
T ss_pred cCCccccccccc------chHHHHHHHHhcCCcEEEEEE
Confidence 234444333222 456677788999999987764
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=92.09 E-value=0.3 Score=40.85 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=68.8
Q ss_pred CeEEEECCCcCHHHHHHHH-cCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC-----CCCCc
Q 023543 124 KKIVELGSGCGLVGCIAAL-LGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI-----QPLPD 197 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~-~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~-----~~~fD 197 (281)
+.|+.||||.=.-+.-+.. .+.+++=+|.+++++.=++-+..++... ..+......|..+.....+. ....-
T Consensus 91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~--~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTP--TADRREVPIDLRQDWPPALRSAGFDPSART 168 (297)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCC--SSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCC--CceEEEecccccchHHHHHHhcCCCCCCCE
Confidence 4677799997654444432 3457888999999887777777776542 23445555554322111111 12234
Q ss_pred EEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
++++-.++++ ++....+++.+..++.+|+.+++.+.
T Consensus 169 l~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 169 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 5666555554 67789999999999999999877654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.71 E-value=0.011 Score=45.29 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=59.1
Q ss_pred ccCCCeEEEECCC--cCHHHHHHHH-cC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC--CC---
Q 023543 120 LLHGKKIVELGSG--CGLVGCIAAL-LG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP--DQ--- 189 (281)
Q Consensus 120 ~~~~~~VLELGcG--tG~~~i~~a~-~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~--~~--- 189 (281)
..++.+||=+||| .|...+.+++ .| .+|+.+|. ++.++.+++. +.. ..++..+.. ..
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---------~~i~~~~~~~~~~~~~ 91 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---------YVINASMQDPLAEIRR 91 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---------EEEETTTSCHHHHHHH
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---------eeeccCCcCHHHHHHH
Confidence 4578899999974 2455554444 56 47999999 6677777643 322 112211110 00
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
......||+|+-+-.- +..++...++++|+|++++...
T Consensus 92 ~~~~~~~d~vid~~g~------~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 92 ITESKGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp HTTTSCEEEEEESCCC------HHHHTTGGGGEEEEEEEEECCS
T ss_pred Hhhcccchhhhccccc------chHHHhhhhhcccCCEEEEecc
Confidence 1123468988876554 6677888889999999877753
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.09 E-value=0.21 Score=40.52 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=56.6
Q ss_pred cCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-C-----
Q 023543 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-D----- 190 (281)
Q Consensus 121 ~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~----- 190 (281)
+.||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+...+..... ..++.+...|..+..+. .
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE----PQKTLFIQCDVADQQQLRDTFRKV 76 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC----GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC----CCcEEEEEeecCCHHHHHHHHHHH
Confidence 368999999988774 33445568999999999 6666666555443211 13566777665442210 0
Q ss_pred -cCCCCCcEEEEccccCCCCcHHH
Q 023543 191 -LIQPLPDYVLGSDVIYSEGAVGD 213 (281)
Q Consensus 191 -~~~~~fD~Iia~d~iy~~~~~~~ 213 (281)
-...+.|++|.+--+......+.
T Consensus 77 ~~~~G~iDilVnnAg~~~~~~~~~ 100 (254)
T d2gdza1 77 VDHFGRLDILVNNAGVNNEKNWEK 100 (254)
T ss_dssp HHHHSCCCEEEECCCCCCSSSHHH
T ss_pred HHHcCCcCeecccccccccccchh
Confidence 01257899999877777665444
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.67 E-value=0.16 Score=38.87 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=57.4
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
..+|.+||=.|||. |+.++.+++ .| .+|+++|. ++.++.+++. +.. ..+++.+....
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA~---------~~in~~~~~~~~~~~~~ 93 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GAT---------ECISPKDSTKPISEVLS 93 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TCS---------EEECGGGCSSCHHHHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CCc---------EEECccccchHHHHHHH
Confidence 45789999999985 666666665 66 47999999 7888888754 221 11222221111
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
......+|+++-+--- ...+...+..+.+.+|.+++....
T Consensus 94 ~~~g~G~d~vi~~~g~-----~~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 94 EMTGNNVGYTFEVIGH-----LETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp HHHTSCCCEEEECSCC-----HHHHHHHHTTSCTTTCEEEECSCC
T ss_pred HhccccceEEEEeCCc-----hHHHHHHHHHhhcCCeEEEEEEcc
Confidence 1123578987765443 233344444444565887776543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.61 E-value=0.71 Score=37.43 Aligned_cols=81 Identities=21% Similarity=0.186 Sum_probs=52.7
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-h-hHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-P-DRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ----- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~-~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~----- 189 (281)
.++||++|=-|++.|+ ++..++..|++|+++|. + +.++.+.+.++.++. ++.+...|..+..+.
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~------~~~~~~~D~~~~~~v~~~~~ 88 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS------DAACVKANVGVVEDIVRMFE 88 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC------CEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC------ceeeEeCCCCCHHHHHHHHH
Confidence 4789999999998874 44556678999999998 3 456666666666543 466666665432110
Q ss_pred -C-cCCCCCcEEEEccccC
Q 023543 190 -D-LIQPLPDYVLGSDVIY 206 (281)
Q Consensus 190 -~-~~~~~fD~Iia~d~iy 206 (281)
. -...+.|+++.+.-..
T Consensus 89 ~~~~~~g~idilV~nag~~ 107 (272)
T d1g0oa_ 89 EAVKIFGKLDIVCSNSGVV 107 (272)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHhCCCCccccccccc
Confidence 0 0114679888765443
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.41 E-value=0.027 Score=43.37 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=54.3
Q ss_pred ccCCCeEEEECC-C-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CCC----
Q 023543 120 LLHGKKIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQD---- 190 (281)
Q Consensus 120 ~~~~~~VLELGc-G-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~~---- 190 (281)
..+|.+||=.|+ | .|..++-+|+ .|++|++++. ++-.+.+++ .+.. . .++..+.. ...
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~-------~--vi~~~~~~~~~~v~~~ 89 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE-------Y--VGDSRSVDFADEILEL 89 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS-------E--EEETTCSTHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----cccc-------c--cccCCccCHHHHHHHH
Confidence 456889999884 3 2455555554 6899988887 555666553 3332 1 12222211 011
Q ss_pred cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 ~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
..+.++|+|+.+-- .+.++.+.++|+++|+++...
T Consensus 90 t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 90 TDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp TTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred hCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEEc
Confidence 12357898885432 235566678899999887653
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.34 E-value=0.22 Score=38.77 Aligned_cols=97 Identities=24% Similarity=0.320 Sum_probs=58.6
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcC----CCCC-------------CceEEEEEec
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH----GDLR-------------GSAVVTELTW 183 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~----~~~~-------------~~i~~~~l~w 183 (281)
++|-=||+|+ | -++..++..|.+|++.|. ++.++.++++++.+-.. .... .++.... ++
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-d~ 83 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST-DA 83 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES-CH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc-hh
Confidence 4778899986 4 355667778999999999 78888887776654110 0000 0111111 00
Q ss_pred CCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 184 GDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 184 ~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
.. .-...|+|+-+ +.-+.+.-..+++.+.+.++++.++
T Consensus 84 ----~~--a~~~ad~ViEa-v~E~l~~K~~v~~~l~~~~~~~~il 121 (192)
T d1f0ya2 84 ----AS--VVHSTDLVVEA-IVENLKVKNELFKRLDKFAAEHTIF 121 (192)
T ss_dssp ----HH--HTTSCSEEEEC-CCSCHHHHHHHHHHHTTTSCTTCEE
T ss_pred ----Hh--hhcccceehhh-cccchhHHHHHHHHHhhhcccCcee
Confidence 00 11346877765 3334455678888888888887654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=89.61 E-value=0.59 Score=37.83 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=54.3
Q ss_pred cCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC------
Q 023543 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD------ 190 (281)
Q Consensus 121 ~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~------ 190 (281)
++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+...+...... .++.+...|..+..+-.
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~----~~~~~~~~Dvt~~~~v~~~~~~~ 77 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPD----AEVLTTVADVSDEAQVEAYVTAT 77 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTT----CCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCC----CeEEEEeccCCCHHHHHHHHHHH
Confidence 679999999998874 45566678999999999 77777776666554332 35667776654422100
Q ss_pred c-CCCCCcEEEEcccc
Q 023543 191 L-IQPLPDYVLGSDVI 205 (281)
Q Consensus 191 ~-~~~~fD~Iia~d~i 205 (281)
. .-.+.|++|.+--+
T Consensus 78 ~~~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 78 TERFGRIDGFFNNAGI 93 (258)
T ss_dssp HHHHSCCSEEEECCCC
T ss_pred HHHhCCCCEEEECCcc
Confidence 0 11568999876543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.34 E-value=1.5 Score=32.81 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=55.8
Q ss_pred ccCCCeEEEECCCc-CHHHHHHH-HcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAA-LLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a-~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
..+|.+||=+|||. |..++.++ ..| .+|+++|. ++.++.+++. +.. ...++.+..+.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga~---------~~i~~~~~~~~~~~~~~ 92 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT---------ECVNPQDYKKPIQEVLT 92 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---------EEECGGGCSSCHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CCe---------eEEecCCchhHHHHHHH
Confidence 46789999999974 33333333 355 48999999 7777777654 222 11222111111
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCC-cEEEEEE
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQ-TTIFLAG 232 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~-g~~~l~~ 232 (281)
...+..+|+|+-+--. +..++....+++++ |.+++..
T Consensus 93 ~~~~~G~D~vid~~G~------~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 93 EMSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp HHTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEECS
T ss_pred HHhcCCCCEEEecCCc------hhHHHHHHHHHhcCCcceEEec
Confidence 1223578988876544 66777777777776 5555554
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.14 E-value=0.42 Score=39.06 Aligned_cols=81 Identities=25% Similarity=0.207 Sum_probs=55.0
Q ss_pred cCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------C
Q 023543 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------D 190 (281)
Q Consensus 121 ~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------~ 190 (281)
++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+.. ..++.+...|..+.... .
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVP---AEKINAVVADVTEASGQDDIINTT 78 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCC---CcceEEEEeeCCCHHHHHHHHHHH
Confidence 689999999998874 34455668999999999 67788888888776543 23577777665432210 0
Q ss_pred c-CCCCCcEEEEccc
Q 023543 191 L-IQPLPDYVLGSDV 204 (281)
Q Consensus 191 ~-~~~~fD~Iia~d~ 204 (281)
. .-.+.|+++.+--
T Consensus 79 ~~~~G~iDilVnnAG 93 (274)
T d1xhla_ 79 LAKFGKIDILVNNAG 93 (274)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCceEEEeecc
Confidence 0 1146899987543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.81 E-value=0.43 Score=38.97 Aligned_cols=81 Identities=17% Similarity=0.127 Sum_probs=55.0
Q ss_pred cCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------C
Q 023543 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------D 190 (281)
Q Consensus 121 ~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------~ 190 (281)
++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+.. ..++.+...|..+.... .
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVS---EKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCC---GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC---CCceEEEEccCCCHHHHHHHHHHH
Confidence 789999999988773 34456668999999999 77788888777766433 23577777765442210 0
Q ss_pred -cCCCCCcEEEEccc
Q 023543 191 -LIQPLPDYVLGSDV 204 (281)
Q Consensus 191 -~~~~~fD~Iia~d~ 204 (281)
-...+.|+++.+--
T Consensus 80 ~~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAG 94 (272)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCceEEEeCCc
Confidence 01146899887543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=88.23 E-value=0.053 Score=41.84 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=57.5
Q ss_pred ccCCCeEEEECCCc--CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC--C---C
Q 023543 120 LLHGKKIVELGSGC--GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD--Q---D 190 (281)
Q Consensus 120 ~~~~~~VLELGcGt--G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~--~---~ 190 (281)
..+|.+||=.|+|. |..++.+|+ .|++|++++. ++.++.++.. +.. .+ ++-.+... . .
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~-------~v--i~~~~~~~~~~~~~~ 93 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD-------AA--FNYKTVNSLEEALKK 93 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS-------EE--EETTSCSCHHHHHHH
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh-------hh--cccccccHHHHHHHH
Confidence 35789999888865 345555555 7899999998 6666665543 322 11 12111111 0 1
Q ss_pred cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 ~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
..+..+|+|+-+-- .+.++...++++++|.+++..
T Consensus 94 ~~~~Gvd~v~D~vG-------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 94 ASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp HCTTCEEEEEESSC-------HHHHHHHGGGEEEEEEEEECC
T ss_pred hhcCCCceeEEecC-------chhhhhhhhhccCCCeEEeec
Confidence 13456887664322 457788889999999987764
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=88.15 E-value=0.54 Score=38.09 Aligned_cols=81 Identities=20% Similarity=0.163 Sum_probs=54.4
Q ss_pred cCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-c----
Q 023543 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-L---- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~---- 191 (281)
++||.+|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+.. ..++.+...|..+..+.. +
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~ 79 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVS---EQNVNSVVADVTTDAGQDEILSTT 79 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC---cCceEEEEccCCCHHHHHHHHHHH
Confidence 689999999988773 34455668999999999 77788887777766433 235777776654322100 0
Q ss_pred --CCCCCcEEEEccc
Q 023543 192 --IQPLPDYVLGSDV 204 (281)
Q Consensus 192 --~~~~fD~Iia~d~ 204 (281)
.-.+.|++|.+--
T Consensus 80 ~~~~g~iDilvnnAG 94 (264)
T d1spxa_ 80 LGKFGKLDILVNNAG 94 (264)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCCEeecccc
Confidence 1156898887543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=88.14 E-value=0.73 Score=37.23 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=52.6
Q ss_pred cCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------C
Q 023543 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------D 190 (281)
Q Consensus 121 ~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------~ 190 (281)
++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+..+. .
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dv~~~~~v~~~~~~~ 76 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG------VEARSYVCDVTSEEAVIGTVDSV 76 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------SCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 689999999988774 44556678999999999 777887777776554 3466666665432210 0
Q ss_pred c-CCCCCcEEEEccc
Q 023543 191 L-IQPLPDYVLGSDV 204 (281)
Q Consensus 191 ~-~~~~fD~Iia~d~ 204 (281)
. .-.+.|++|.+--
T Consensus 77 ~~~~g~iDilVnnaG 91 (260)
T d1zema1 77 VRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCCeehhhhc
Confidence 0 1146898886543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=88.12 E-value=0.36 Score=36.35 Aligned_cols=101 Identities=16% Similarity=0.089 Sum_probs=56.5
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
++|-=+|||. | .++..+++.|.+|++.|. ++.++.++.+-...... ...........-...... .-+..|+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~e--~~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEG--PGLAGTAHPDLLTSDIGL--AVKDADVIL 77 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEES--SSCCEEECCSEEESCHHH--HHTTCSEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhh--hhhhhhhhhhhhhhhhHh--HhcCCCEEE
Confidence 5777788886 3 445566678999999999 66666554332111000 000000000000000000 014679988
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
.+- ....++.+++.++.+++++..++++
T Consensus 78 i~v---~~~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 78 IVV---PAIHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp ECS---CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred EEE---chhHHHHHHHHhhhccCCCCEEEEe
Confidence 763 3456789999999999998876543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.02 E-value=0.91 Score=36.64 Aligned_cols=82 Identities=12% Similarity=-0.004 Sum_probs=53.4
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
.++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.....|..+..+.
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~ 78 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG------FQVTGSVCDASLRPEREKLMQT 78 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEeccCCCHHHHHHHHHH
Confidence 4689999999998874 44556668999999999 667777766665543 2466666664432110
Q ss_pred C--cCCCCCcEEEEccccCC
Q 023543 190 D--LIQPLPDYVLGSDVIYS 207 (281)
Q Consensus 190 ~--~~~~~fD~Iia~d~iy~ 207 (281)
. ....+.|+++.+--+..
T Consensus 79 ~~~~~~g~idilvnnAG~~~ 98 (259)
T d1xq1a_ 79 VSSMFGGKLDILINNLGAIR 98 (259)
T ss_dssp HHHHHTTCCSEEEEECCC--
T ss_pred HHHHhCCCcccccccccccC
Confidence 0 01356899998655443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=86.78 E-value=1.2 Score=35.70 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=51.5
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
.++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+....- .++.+...|..+..+.
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g-----~~~~~~~~Dv~~~~~v~~~~~~ 76 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG-----VETMAFRCDVSNYEEVKKLLEA 76 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 3689999999988774 44556678999999999 6666655554433321 2466666665432110
Q ss_pred Cc-CCCCCcEEEEccccC
Q 023543 190 DL-IQPLPDYVLGSDVIY 206 (281)
Q Consensus 190 ~~-~~~~fD~Iia~d~iy 206 (281)
.. .-.++|++|.+--+.
T Consensus 77 ~~~~~g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 77 VKEKFGKLDTVVNAAGIN 94 (251)
T ss_dssp HHHHHSCCCEEEECCCCC
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 00 114789999765543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=86.68 E-value=1.3 Score=37.72 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-c--------CCEEEEEechhHHHHHHHH
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-L--------GAQVILTDLPDRLRLLKKN 162 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~--------g~~V~~tD~~~~l~~~~~N 162 (281)
+..+|.|+........ ..+.-+|||+|+|.|.++.-+.. . ..+++.++.+..+...+++
T Consensus 61 g~~ia~~~~~~~~~~~-~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~ 128 (365)
T d1zkda1 61 GELLGLWSASVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT 128 (365)
T ss_dssp HHHHHHHHHHHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHH
Confidence 4456677665422110 12335899999999977653322 1 2258999996665555544
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=86.26 E-value=1.3 Score=35.63 Aligned_cols=82 Identities=12% Similarity=0.043 Sum_probs=53.9
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
.++||+||=.|+..|+ ++..+++.|++|+++|. ++.++.+.+.+...+. ++.+...|..+..+.
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~------~~~~~~~D~s~~~~~~~~~~~ 76 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL------NVEGSVCDLLSRTERDKLMQT 76 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC------CEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEeecCCHHHHHHHHHH
Confidence 3689999999988763 34455668999999999 6667777766666543 466666665432210
Q ss_pred --CcCCCCCcEEEEccccCC
Q 023543 190 --DLIQPLPDYVLGSDVIYS 207 (281)
Q Consensus 190 --~~~~~~fD~Iia~d~iy~ 207 (281)
...+.+.|+++.+--+..
T Consensus 77 ~~~~~~g~idilinnag~~~ 96 (258)
T d1ae1a_ 77 VAHVFDGKLNILVNNAGVVI 96 (258)
T ss_dssp HHHHTTSCCCEEEECCCCCC
T ss_pred HHHHhCCCcEEEeccccccc
Confidence 112356898887544433
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.25 E-value=1.4 Score=32.59 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=59.7
Q ss_pred eEEEECCCc-C-HHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 125 KIVELGSGC-G-LVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 125 ~VLELGcGt-G-~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
+|+=+|||. | .++..+.+.|. +|++.|. ++.++.++++ +.. . .... + .........|+|
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~-------~-~~~~--~--~~~~~~~~~dlI 66 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GII-------D-EGTT--S--IAKVEDFSPDFV 66 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSC-------S-EEES--C--GGGGGGTCCSEE
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcc-------h-hhhh--h--hhhhhccccccc
Confidence 566788763 2 23334444564 7999999 6777766643 111 0 0110 0 011122457999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDF 251 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f 251 (281)
+.+-.. .....++..+..+++++..+.-+...... ..+.+.+.+...|
T Consensus 67 ila~p~---~~~~~vl~~l~~~~~~~~ii~d~~s~k~~-~~~~~~~~~~~~~ 114 (171)
T d2g5ca2 67 MLSSPV---RTFREIAKKLSYILSEDATVTDQGSVKGK-LVYDLENILGKRF 114 (171)
T ss_dssp EECSCH---HHHHHHHHHHHHHSCTTCEEEECCSCCTH-HHHHHHHHHGGGE
T ss_pred cccCCc---hhhhhhhhhhhccccccccccccccccHH-HHHHHHHhhcccc
Confidence 877653 45677888888899988876555444443 2333333344444
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=86.06 E-value=2 Score=32.53 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=53.6
Q ss_pred ccCCCeEEEECCCcC---HHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE---ecCCCCCC--
Q 023543 120 LLHGKKIVELGSGCG---LVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL---TWGDDPDQ-- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG---~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l---~w~~~~~~-- 189 (281)
..+|.+||=+.+|+| ..++-+|+ .|++|+++-. ++..+...+.++..+.+ . +... ++.+....
T Consensus 26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad-----~--vi~~~~~~~~~~~~~v~ 98 (189)
T d1gu7a2 26 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT-----Q--VITEDQNNSREFGPTIK 98 (189)
T ss_dssp CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS-----E--EEEHHHHHCGGGHHHHH
T ss_pred CCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc-----E--EEeccccchhHHHHHHH
Confidence 356778888855554 44555555 7999887744 44444444444555543 1 1111 11000000
Q ss_pred C---cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 190 D---LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 190 ~---~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
. ....++|+|+ |++- .+.+....++|+++|+++...
T Consensus 99 ~~~~~~g~~vdvv~--D~vg-----~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 99 EWIKQSGGEAKLAL--NCVG-----GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp HHHHHHTCCEEEEE--ESSC-----HHHHHHHHHTSCTTCEEEECC
T ss_pred HHHhhccCCceEEE--ECCC-----cchhhhhhhhhcCCcEEEEEC
Confidence 0 0134678777 3331 445566778999999987654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.78 E-value=1.3 Score=35.36 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=56.6
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
.+.|+.+|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+++...+ .++.....|..+....
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~ 77 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG------AKVHTFVVDCSNREDIYSSAKK 77 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHH
Confidence 4789999999999884 44556678999999999 777888877776543 3566777665443210
Q ss_pred C-cCCCCCcEEEEccccCC
Q 023543 190 D-LIQPLPDYVLGSDVIYS 207 (281)
Q Consensus 190 ~-~~~~~fD~Iia~d~iy~ 207 (281)
. -..+..|+++.+.-+..
T Consensus 78 i~~~~g~idilinnag~~~ 96 (244)
T d1yb1a_ 78 VKAEIGDVSILVNNAGVVY 96 (244)
T ss_dssp HHHHTCCCSEEEECCCCCC
T ss_pred HHHHcCCCceeEeeccccc
Confidence 0 02356899887665544
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=85.76 E-value=1 Score=38.96 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=39.1
Q ss_pred CCCeEEEECCCcCHHHHHHHH--c--CCEEEEEec-hhHHHHHHHHHHHhhcC
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--L--GAQVILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~--g~~V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
++..++|+||=.|..+..+++ . +.+|++.+. +...+.+++|+..|...
T Consensus 212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~ 264 (395)
T d2py6a1 212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT 264 (395)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence 567999999999988776554 2 358999999 88899999999988653
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=85.69 E-value=1.5 Score=35.67 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=50.3
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
.++||++|=-|+..|+ ++..+++.|++|+++|. ++.++.+.+.+....- .++.+...|..+....
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g-----~~~~~~~~D~~~~~~v~~~~~~ 96 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-----NKVHAIQCDVRDPDMVQNTVSE 96 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-----SCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC-----CceEEEEecccChHHHHHHhhh
Confidence 5899999999987762 33345567999999999 6666655554433221 2455666554332110
Q ss_pred -CcCCCCCcEEEEccccC
Q 023543 190 -DLIQPLPDYVLGSDVIY 206 (281)
Q Consensus 190 -~~~~~~fD~Iia~d~iy 206 (281)
.......|+++.+--..
T Consensus 97 ~~~~~g~iDilvnnAg~~ 114 (294)
T d1w6ua_ 97 LIKVAGHPNIVINNAAGN 114 (294)
T ss_dssp HHHHTCSCSEEEECCCCC
T ss_pred hhhhccccchhhhhhhhc
Confidence 01135679888765443
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.39 E-value=1.2 Score=35.86 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=50.9
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
.++||++|=-|++.|+ ++..+++.|++|++++. .+.++.+...+..... ..+.....+..+....
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~ 85 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-----ASAHYIAGTMEDMTFAEQFVAQ 85 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-----SEEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhc-----ccchhhhhhhhhHHHHHHHHHH
Confidence 4799999999999883 34455568999999999 7777777665544432 2344444332211100
Q ss_pred -CcCCCCCcEEEEccccCC
Q 023543 190 -DLIQPLPDYVLGSDVIYS 207 (281)
Q Consensus 190 -~~~~~~fD~Iia~d~iy~ 207 (281)
.......|+++.+...+.
T Consensus 86 ~~~~~g~~~~li~nag~~~ 104 (269)
T d1xu9a_ 86 AGKLMGGLDMLILNHITNT 104 (269)
T ss_dssp HHHHHTSCSEEEECCCCCC
T ss_pred HHHHhCCcccccccccccc
Confidence 001246788887655544
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=85.17 E-value=1.4 Score=35.36 Aligned_cols=81 Identities=14% Similarity=0.045 Sum_probs=53.1
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
.++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+..+.
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dv~~~~~v~~~~~~ 78 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG------FKVEASVCDLSSRSERQELMNT 78 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEEeeCCCHHHHHHHHHH
Confidence 4789999999988774 34455668999999999 677777766665543 2455666554432110
Q ss_pred C--cCCCCCcEEEEccccC
Q 023543 190 D--LIQPLPDYVLGSDVIY 206 (281)
Q Consensus 190 ~--~~~~~fD~Iia~d~iy 206 (281)
. -...+.|++|.+--+.
T Consensus 79 ~~~~~~~~idilvnnAG~~ 97 (259)
T d2ae2a_ 79 VANHFHGKLNILVNNAGIV 97 (259)
T ss_dssp HHHHTTTCCCEEEECCCCC
T ss_pred HHHHhCCCceEEEECCcee
Confidence 0 1134689999865443
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=84.77 E-value=8.6 Score=31.30 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=31.9
Q ss_pred cccCCCeEEEECCCcCHHHHHHHH----cCCEEEEEec-hhHHHHHHHHHH
Q 023543 119 LLLHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIE 164 (281)
Q Consensus 119 ~~~~~~~VLELGcGtG~~~i~~a~----~g~~V~~tD~-~~~l~~~~~N~~ 164 (281)
...+|++||=.| |+|.+|-.+++ .|.+|+++.. .......+....
T Consensus 7 ~~~~gk~VlVTG-~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~ 56 (342)
T d1y1pa1 7 VLPEGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWD 56 (342)
T ss_dssp SSCTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCcCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhh
Confidence 356799999999 57999977664 5899998876 444454544433
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=84.46 E-value=0.67 Score=35.38 Aligned_cols=93 Identities=17% Similarity=0.082 Sum_probs=55.2
Q ss_pred CCCeEEEECCCc--CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 122 HGKKIVELGSGC--GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 122 ~~~~VLELGcGt--G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
++++||=.|+.. |..++-+|+ +|++|+++.- ++..+.++. .+.+ .+...+- ......+.+..+|
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~----lGad-------~vi~~~~-~~~~~~l~~~~~~ 98 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS----LGAS-------RVLPRDE-FAESRPLEKQVWA 98 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH----HTEE-------EEEEGGG-SSSCCSSCCCCEE
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHh----hccc-------ccccccc-HHHHHHHHhhcCC
Confidence 455788776432 344555554 7999999998 666665553 3322 2222221 1112233445678
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.|+ |++ -.+.+....+.++++|+++....
T Consensus 99 ~vv--D~V-----gg~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 99 GAI--DTV-----GDKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp EEE--ESS-----CHHHHHHHHHTEEEEEEEEECCC
T ss_pred eeE--EEc-----chHHHHHHHHHhccccceEeecc
Confidence 765 555 25567888888999999887654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=84.34 E-value=0.5 Score=36.37 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=58.4
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcC----CCC--------CCceEEEEEecCCCCC
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH----GDL--------RGSAVVTELTWGDDPD 188 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~----~~~--------~~~i~~~~l~w~~~~~ 188 (281)
++|-=+|+|+ | -++..++..|.+|++.|. ++.++.+..++..+... ... ..++... ....
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~ 79 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT-----LSYG 79 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE-----SSST
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecc-----cccc
Confidence 3567788876 4 234466678999999999 77787776665544211 000 0112111 1111
Q ss_pred CCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 189 QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
.+ ...|+|+- .+..+.+.-..+++.+.++++++.++.
T Consensus 80 -~~--~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~Iia 116 (186)
T d1wdka3 80 -DF--GNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILA 116 (186)
T ss_dssp -TG--GGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred -cc--cccceeee-eecchHHHHHHHHHHHHhhcCCCeeEE
Confidence 11 34688886 344556667889999999998887653
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=84.01 E-value=1.1 Score=36.18 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=49.5
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
.++||.+|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+... +.+.+...|..+..+-
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~-------~~~~~~~~Dv~~~~~v~~~~~~ 75 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP-------DVISFVHCDVTKDEDVRNLVDT 75 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT-------TTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC-------CceEEEEccCCCHHHHHHHHHH
Confidence 3789999999988874 23445567999999999 66666555444321 3566666665432110
Q ss_pred C-cCCCCCcEEEEcccc
Q 023543 190 D-LIQPLPDYVLGSDVI 205 (281)
Q Consensus 190 ~-~~~~~fD~Iia~d~i 205 (281)
. -...+.|++|.+--+
T Consensus 76 ~~~~~g~iD~lVnnAG~ 92 (268)
T d2bgka1 76 TIAKHGKLDIMFGNVGV 92 (268)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHcCCcceecccccc
Confidence 0 012578999975443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=83.69 E-value=1 Score=33.37 Aligned_cols=87 Identities=11% Similarity=0.012 Sum_probs=51.4
Q ss_pred eEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 125 KIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 125 ~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
+|.=+|+|. | .++..+.+.|.+|++.|. ++.++.+++ ++.. . . .. +..+ .-...|+|+.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~~-----~-~-~~----~~~~---~~~~~DiIil 63 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLV-----D-E-AG----QDLS---LLQTAKIIFL 63 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTSC-----S-E-EE----SCGG---GGTTCSEEEE
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhcc-----c-e-ee----eecc---cccccccccc
Confidence 455567663 2 344455567899999999 666665543 2221 0 0 00 1111 1146798886
Q ss_pred ccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 202 SDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 202 ~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+=. ....+.+++.+...++++..+.-..
T Consensus 64 avp---~~~~~~vl~~l~~~l~~~~iv~~~~ 91 (165)
T d2f1ka2 64 CTP---IQLILPTLEKLIPHLSPTAIVTDVA 91 (165)
T ss_dssp CSC---HHHHHHHHHHHGGGSCTTCEEEECC
T ss_pred cCc---Hhhhhhhhhhhhhhcccccceeecc
Confidence 543 3457788888888888888765443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=83.42 E-value=1.6 Score=34.91 Aligned_cols=82 Identities=13% Similarity=-0.019 Sum_probs=53.5
Q ss_pred cccCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC----
Q 023543 119 LLLHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ---- 189 (281)
Q Consensus 119 ~~~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~---- 189 (281)
+.+++|.+|=-|++.| +|.. +++.|++|+++|. ++.++.+.+.++..+ .++.+...|..+..+.
T Consensus 6 f~lenKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g------~~~~~~~~Dvt~~~~v~~~~ 78 (251)
T d2c07a1 6 YCGENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG------YESSGYAGDVSKKEEISEVI 78 (251)
T ss_dssp CCCSSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT------CCEEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHH
Confidence 3478999999998777 3444 4457999999999 677777777666543 2466667665432110
Q ss_pred --C-cCCCCCcEEEEccccCC
Q 023543 190 --D-LIQPLPDYVLGSDVIYS 207 (281)
Q Consensus 190 --~-~~~~~fD~Iia~d~iy~ 207 (281)
. -...+.|++|.+.-+..
T Consensus 79 ~~~~~~~g~iDilvnnag~~~ 99 (251)
T d2c07a1 79 NKILTEHKNVDILVNNAGITR 99 (251)
T ss_dssp HHHHHHCSCCCEEEECCCCCC
T ss_pred HHHHHhcCCceeeeecccccc
Confidence 0 01257899987655543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=83.31 E-value=1.4 Score=35.43 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=53.2
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
.++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.++..+ .++.+...|..+..+.
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g------~~~~~~~~Dvs~~~~~~~~~~~ 81 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG------GQAFACRCDITSEQELSALADF 81 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEccCCCHHHHHHHHHH
Confidence 4789999999988774 33445567999999999 677777776666543 3466666665432110
Q ss_pred Cc-CCCCCcEEEEccccCC
Q 023543 190 DL-IQPLPDYVLGSDVIYS 207 (281)
Q Consensus 190 ~~-~~~~fD~Iia~d~iy~ 207 (281)
.. .-.+.|+++.+--+..
T Consensus 82 ~~~~~g~iDilvnnAG~~~ 100 (255)
T d1fmca_ 82 AISKLGKVDILVNNAGGGG 100 (255)
T ss_dssp HHHHHSSCCEEEECCCCCC
T ss_pred HHHHcCCCCEeeeCCcCCC
Confidence 00 1156898888655443
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.01 E-value=2.5 Score=34.61 Aligned_cols=87 Identities=15% Similarity=0.227 Sum_probs=54.4
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
.++||++|=-|++.|+ ++..+++.|++|+++|. .+.++.+.+.+..+... ....++.+...|..+..+.
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP-TKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT-TCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc-ccCceEEEEeccCCCHHHHHHHHHH
Confidence 5799999999988874 33445568999999999 67777666655544222 1124566667665432210
Q ss_pred Cc-CCCCCcEEEEccccCC
Q 023543 190 DL-IQPLPDYVLGSDVIYS 207 (281)
Q Consensus 190 ~~-~~~~fD~Iia~d~iy~ 207 (281)
.. ...+.|++|.+.-+..
T Consensus 88 ~~~~~G~iDiLVnnAg~~~ 106 (297)
T d1yxma1 88 TLDTFGKINFLVNNGGGQF 106 (297)
T ss_dssp HHHHHSCCCEEEECCCCCC
T ss_pred HHHHhCCeEEEEeeccccc
Confidence 00 1246899997655433
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=82.77 E-value=0.69 Score=37.94 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=74.1
Q ss_pred CHHHHHHH--HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-CC
Q 023543 134 GLVGCIAA--LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS-EG 209 (281)
Q Consensus 134 G~~~i~~a--~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~-~~ 209 (281)
|.+.++.. +..-+..+.++ ++-.+.+++|+.. ..++.+...|--......++.++=--+|.-|.-|. ..
T Consensus 92 GSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~-------~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpYE~k~ 164 (271)
T d2oo3a1 92 GSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF-------NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKE 164 (271)
T ss_dssp CHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT-------TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTT
T ss_pred CCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhcc-------CCCceEEcCchHHHHHhhCCCCCCceEEEecCCcCCHH
Confidence 44444444 45568999999 8877777766432 13566665331100001122222345666787777 56
Q ss_pred cHHHHHHHHHHhhC--CCcEEEEEEeeeChhHHHHHHHHHhc-CCe
Q 023543 210 AVGDLLDTLLQLCG--TQTTIFLAGELRNDSVLEYFLEAAMK-DFV 252 (281)
Q Consensus 210 ~~~~ll~~l~~ll~--~~g~~~l~~~~r~~~~~~~fl~~~~~-~f~ 252 (281)
++..+++++.+.++ +.|++++=++..+....+.|.+.+.. +.+
T Consensus 165 ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~~~~~k 210 (271)
T d2oo3a1 165 EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSK 210 (271)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHHhcCcc
Confidence 89999999999886 78999999999888888889988874 544
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=82.70 E-value=1.3 Score=35.61 Aligned_cols=82 Identities=10% Similarity=-0.037 Sum_probs=50.8
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHH-HHhhcCCCCCCceEEEEEecCCCCCC-----
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNI-ENNLRHGDLRGSAVVTELTWGDDPDQ----- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~-~~n~~~~~~~~~i~~~~l~w~~~~~~----- 189 (281)
.++||++|=-|++.|+ ++..+++.|++|+++|. ++.+..+.+.+ +..+ .++.+...|..+..+.
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g------~~~~~~~~Dv~~~~~v~~~~~ 79 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG------VKTKAYQCDVSNTDIVTKTIQ 79 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT------CCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC------CceEEEEccCCCHHHHHHHHH
Confidence 4789999999987763 34455668999999999 55555444444 3333 2466667665432210
Q ss_pred -C-cCCCCCcEEEEccccCC
Q 023543 190 -D-LIQPLPDYVLGSDVIYS 207 (281)
Q Consensus 190 -~-~~~~~fD~Iia~d~iy~ 207 (281)
. -...+.|++|.+--+..
T Consensus 80 ~~~~~~g~iDilVnnAg~~~ 99 (260)
T d1h5qa_ 80 QIDADLGPISGLIANAGVSV 99 (260)
T ss_dssp HHHHHSCSEEEEEECCCCCC
T ss_pred HHHHHhCCCcEecccccccc
Confidence 0 01256898887655443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.24 E-value=0.67 Score=35.38 Aligned_cols=98 Identities=12% Similarity=0.026 Sum_probs=57.6
Q ss_pred cCCCeEEEECCCcC--HHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCG--LVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG--~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+||=-|++.| ..++-+|+ .|++|+++-- ++-.+.+++ .+.. .+.-..-+|.+. .....+..+
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~----lGa~-----~vi~~~~~~~~~-~~~~~~~gv 99 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAK-----EVLAREDVMAER-IRPLDKQRW 99 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCS-----EEEECC----------CCSCCE
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh----cccc-----eeeecchhHHHH-HHHhhccCc
Confidence 46889999997654 55666664 7999999988 566666653 2322 111111111111 112235679
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|+|+-+ +- ...+....+.|+++|+++.+....
T Consensus 100 D~vid~--vg-----g~~~~~~l~~l~~~Griv~~G~~~ 131 (176)
T d1xa0a2 100 AAAVDP--VG-----GRTLATVLSRMRYGGAVAVSGLTG 131 (176)
T ss_dssp EEEEEC--ST-----TTTHHHHHHTEEEEEEEEECSCCS
T ss_pred CEEEEc--CC-----chhHHHHHHHhCCCceEEEeeccc
Confidence 977753 21 335677788899999988776543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=81.76 E-value=1.1 Score=33.69 Aligned_cols=98 Identities=13% Similarity=0.045 Sum_probs=56.9
Q ss_pred cCCCeEEEECCCc--CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC--GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt--G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=-|++. |..++-+|+ .|++|++|.- ++-.+.+++ .+.+ .+ +..-++.........+..+
T Consensus 22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~----lGad-----~v-i~~~~~~~~~~~~~~~~gv 91 (167)
T d1tt7a2 22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGAS-----EV-ISREDVYDGTLKALSKQQW 91 (167)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTCS-----EE-EEHHHHCSSCCCSSCCCCE
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHh----hccc-----ce-EeccchhchhhhcccCCCc
Confidence 3566788877533 455555565 7999999999 566666543 2322 11 1111111111112234678
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|+|+-+-- .+.+....+.|+++|++++.....
T Consensus 92 d~vid~vg-------g~~~~~~~~~l~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 92 QGAVDPVG-------GKQLASLLSKIQYGGSVAVSGLTG 123 (167)
T ss_dssp EEEEESCC-------THHHHHHHTTEEEEEEEEECCCSS
T ss_pred eEEEecCc-------HHHHHHHHHHhccCceEEEeeccC
Confidence 87764422 456677888899999987765443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=80.03 E-value=1.5 Score=34.99 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=51.5
Q ss_pred cCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-----c
Q 023543 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-----L 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-----~ 191 (281)
++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+.. .+++.+...|..+..+.. .
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------PDQIQFFQHDSSDEDGWTKLFDAT 76 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 789999999987773 34455668999999999 6667666555422 135777776654322100 0
Q ss_pred --CCCCCcEEEEccccCC
Q 023543 192 --IQPLPDYVLGSDVIYS 207 (281)
Q Consensus 192 --~~~~fD~Iia~d~iy~ 207 (281)
.-.+.|++|.+--+..
T Consensus 77 ~~~~G~iDiLVnnAg~~~ 94 (251)
T d1zk4a1 77 EKAFGPVSTLVNNAGIAV 94 (251)
T ss_dssp HHHHSSCCEEEECCCCCC
T ss_pred HHHhCCceEEEecccccc
Confidence 1157899887655543
|