Citrus Sinensis ID: 023560

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MDHGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDPGSLSDNRAVSEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGNINGST
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEccccccccc
Coil and Loop (DISEMBL)
mdhgsnpqmqmsdeqhaihhvnyvpehelhhisngdvmddehdegngvgeseamegdapsdpgslsdnravseigdqltlsfqgqvyvfdsvSPEKVQAVLLLLggrevpsttpaipiannqnnRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRnkgqftsaksnnedsasaisswgsnqswagdvngsqnqdivcrhcgisekstpmmrrgpegprtlcnacglmwankgtlrdlskaapqagqtsslnkneengtlKAEQVIRAVGNINGST
Flexible Loop (DISEMBL)
MDHGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDPGSLSDNRAVSEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPsttpaipiannqnnrrlaslirfrekrkernfekkirytvrkevalrmqrnkgqftsaksnneDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGIsekstpmmrrgpEGPRTLCNACGLMWANKGTLRDLSKAAPqagqtsslnkneengtlkaeqviravgningst
Low Complexity Region (SEG)
MDHGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDPGSLSDNRAVSEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNRRLASLirfrekrkernfekkirYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGNINGST
Disordered region (IsUnstruct)
*******************HVNYV*************************************************IGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPI********LASLIRF***********KIRYTVR***********************************************DIVCRHCGI****************TLCNACGLMWANKGTL*****************************************
Disordered Region (DISOPRED)
***********************************************************************************************************************************************************************************************VNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWAN*********************************************
Disordered Region (DISEMBL)
***********SDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGE**************LSDNRAVSEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKG*******************GSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDL*************NKNEENGTLKAEQVIRAVGNINGST
Disordered Region (DISPRO)
*****************IHHVNYVPEHELHH*******************************************GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREV***************RRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNK***********************************QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT******************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDHGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDPGSLSDNRAVSEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGNINGST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
Q8H1G0	302	GATA transcription factor	yes	no	0.967	0.897	0.625	1e-95
Q8GXL7	297	GATA transcription factor	no	no	0.967	0.912	0.604	5e-90
Q9LRH6	309	GATA transcription factor	no	no	0.585	0.530	0.543	6e-47
Q0D3B6	742	Two-component response re	no	no	0.160	0.060	0.533	5e-07
A2YQ93	742	Two-component response re	N/A	no	0.160	0.060	0.533	5e-07
Q55C49	1006	GATA zinc finger domain-c	yes	no	0.125	0.034	0.594	8e-07
Q00858	457	Cutinase gene palindrome-	N/A	no	0.160	0.098	0.489	1e-06
O13415	866	Nitrogen regulatory prote	no	no	0.407	0.131	0.349	3e-06
Q940T9	362	Zinc finger protein CONST	no	no	0.217	0.168	0.437	3e-06
B0G188	695	GATA zinc finger domain-c	no	no	0.121	0.048	0.555	4e-06

>sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1

 Score =  349 bits (896), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 184/294 (62%), Positives = 213/294 (72%), Gaps = 23/294 (7%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVM-DDEHDEGNGVGESEAMEGDAPSD 61
           HGSN +M + + Q  +H V +   H LHHI NG  M DD+ D+GN  G SE +E D PS 
Sbjct: 5   HGSNARMHIREAQDPMH-VQF-EHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSH 62

Query: 62  PGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAI 116
           PG+++DNR       SE GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P  
Sbjct: 63  PGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPG 122

Query: 117 PIANNQNNR---------------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRN 161
             + +QNNR               RLASL+RFREKRK RNF+KKIRYTVRKEVALRMQRN
Sbjct: 123 LGSPHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRN 182

Query: 162 KGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEG 221
           KGQFTSAKSNN+++ASA SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP G
Sbjct: 183 KGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAG 242

Query: 222 PRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGN 275
           PRTLCNACGLMWANKG  RDLSKA+PQ  Q   LNKNE+       Q++  V N
Sbjct: 243 PRTLCNACGLMWANKGAFRDLSKASPQTAQNLPLNKNEDANLETDHQIMITVAN 296

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2

 Score =  330 bits (847), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 180/298 (60%), Positives = 211/298 (70%), Gaps = 27/298 (9%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDP 62
           HG N +M +   Q+ +H V Y  +H LHHI N + M D+H +G   G  E +E D PS P
Sbjct: 5   HGRNGRMHIGVAQNPMH-VQY-EDHGLHHIDNENSMMDDHADG---GMDEGVETDIPSHP 59

Query: 63  GSLSDNRAVS-----EIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIP 117
           G+ +DNR        E GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P   
Sbjct: 60  GNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTL 119

Query: 118 IANNQNNR---------------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNK 162
            + +QNNR               RLASL+RFREKRK RNF+K IRYTVRKEVALRMQR K
Sbjct: 120 GSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKK 179

Query: 163 GQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGP 222
           GQFTSAKS+N+DS S  S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GP
Sbjct: 180 GQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGP 239

Query: 223 RTLCNACGLMWANKGTLRDLSKA-APQAGQTSSLNKNEENGTLKAEQVIRAVGNINGS 279
           RTLCNACGLMWANKGTLRDLSK   PQ  Q  SLNKNE+   L+A+Q++   G+I+ +
Sbjct: 240 RTLCNACGLMWANKGTLRDLSKVPPPQTPQHLSLNKNED-ANLEADQMMEVTGDISNT 296

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2

 Score =  187 bits (476), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 101/186 (54%), Positives = 122/186 (65%), Gaps = 22/186 (11%)

Query: 73  EIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAI-PIANNQNN------- 124
           E  +QLT+SF+GQVYVFD+V  +KV AVL LLGG    +  P +  +A  QN+       
Sbjct: 79  EGANQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQ 138

Query: 125 ------RRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASA 178
                 +R  SL RFR+KR  R FEKK+RY VR+EVALRM RNKGQFTS+K  +      
Sbjct: 139 SRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTD-----G 193

Query: 179 ISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT 238
             + G++Q  A D     + +I C HCGIS K TPMMRRGP GPRTLCNACGL WAN+GT
Sbjct: 194 AYNSGTDQDSAQD---DAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGT 250

Query: 239 LRDLSK 244
           LRDLSK
Sbjct: 251 LRDLSK 256

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 122 QNNRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFT 166
           Q   R+A++I+FR+KRKERNF KK+RY  RK +A +  R +GQF 
Sbjct: 678 QREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFV 722

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 122 QNNRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFT 166
           Q   R+A++I+FR+KRKERNF KK+RY  RK +A +  R +GQF 
Sbjct: 678 QREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFV 722

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q55C49|GTAG_DICDI GATA zinc finger domain-containing protein 7 OS=Dictyostelium discoideum GN=gtaG PE=4 SV=1

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 2/37 (5%)

Query: 200 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 236
           + C +CG   K+TP  RRGP GP TLCNACGL +A K
Sbjct: 840 LYCHNCGT--KNTPEWRRGPSGPATLCNACGLAYAKK 874

Dictyostelium discoideum (taxid: 44689)

>sp|Q00858|CGPB_FUSSO Cutinase gene palindrome-binding protein OS=Fusarium solani subsp. pisi PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 197 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 243
           +++ VC  CG  +  +P  R+GP GP+TLCNACGL WA K   R+ S
Sbjct: 397 SEEYVCTDCGTLD--SPEWRKGPSGPKTLCNACGLRWAKKEKKRNSS 441

Binds a palindromic promoter element essential for induction of fungal cutinase gene.

Fusarium solani subsp. pisi (taxid: 70791)

>sp|O13415|AREA_ASPOR Nitrogen regulatory protein areA OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=areA PE=4 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 9/123 (7%)

Query: 127 LASLIRFREKRKERNFEKKIRYTVRKEVA--LRMQRNKGQFTSAKSNNEDSASAISSWGS 184
           +AS+   R + ++   +K  R T     A  LR   +    TS  S N    SA+SS   
Sbjct: 583 VASVSEVRNREQDPRRQKIARTTSTPNTAQLLRQSMHSNNNTSHTSPNTPPESALSSAVP 642

Query: 185 NQ--SWAGDVNGSQ--NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLR 240
           ++  S  G  NG Q  N    C +C    ++TP+ RR PEG + LCNACGL     G +R
Sbjct: 643 SRPASPGGSKNGDQGSNGPTTCTNCFT--QTTPLWRRNPEG-QPLCNACGLFLKLHGVVR 699

Query: 241 DLS 243
            LS
Sbjct: 700 PLS 702

Major nitrogen regulatory protein. Positively acting regulatory gene of nitrogen metabolite repression.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 110 PSTTPAIPIANNQNNRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAK 169
           P T  A+P+ + +   R A ++R+REKRK R FEK IRY  RK  A    R KG+F    
Sbjct: 282 PGTQRAVPLTSAE---REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 338

Query: 170 SNNE 173
             NE
Sbjct: 339 DTNE 342

Arabidopsis thaliana (taxid: 3702)

>sp|B0G188|GTAP_DICDI GATA zinc finger domain-containing protein 16 OS=Dictyostelium discoideum GN=gtaP PE=4 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWA 234
           ++ C  CG++  +TP  RRGP G +TLCNACGL WA
Sbjct: 476 ELSCHTCGVT--NTPEWRRGPNGAKTLCNACGLAWA 509

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
356526306	300	PREDICTED: GATA transcription factor 28-	0.946	0.883	0.646	1e-101
18403600	302	GATA transcription factor 28 [Arabidopsi	0.967	0.897	0.625	7e-94
15028099	302	putative flowering protein CONSTANS [Ara	0.967	0.897	0.625	2e-93
225443335	299	PREDICTED: GATA transcription factor 28-	0.939	0.879	0.647	1e-91
449447986	299	PREDICTED: GATA transcription factor 24-	0.907	0.849	0.613	2e-90
449491798	303	PREDICTED: GATA transcription factor 24-	0.907	0.838	0.613	2e-90
297847530	302	hypothetical protein ARALYDRAFT_892135 [	0.967	0.897	0.636	7e-90
30686115	295	GATA transcription factor 24 [Arabidopsi	0.967	0.918	0.608	2e-88
18402914	297	GATA transcription factor 24 [Arabidopsi	0.967	0.912	0.604	3e-88
21537322	297	flowering protein CONSTANS, putative [Ar	0.957	0.902	0.606	1e-87

>gi|356526306|ref|XP_003531759.1| PREDICTED: GATA transcription factor 28-like [Glycine max]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/294 (64%), Positives = 227/294 (77%), Gaps = 29/294 (9%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHE---LHHISNGDVMDDEHDEG--NGVGESEAMEGD 57
           HG + ++ ++D QH IH V YV EHE   LHHISNG+ +DD+H++G     G SE+MEG+
Sbjct: 5   HGGDSRIHITDGQHPIH-VPYVQEHEHHGLHHISNGNGIDDDHNDGGDTNCGGSESMEGE 63

Query: 58  APSDPGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPST 112
            PS+ G+L DN AV      + GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGRE+P T
Sbjct: 64  VPSNHGNLPDNHAVMMDQGGDSGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPT 123

Query: 113 TPAIPIANNQNNR-------------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQ 159
            PA+P++ N NNR             RLASLIRFREKRKERN++KKIRYTVRKEVALRMQ
Sbjct: 124 MPAMPVSPNHNNRGYTGTPQKFSVPQRLASLIRFREKRKERNYDKKIRYTVRKEVALRMQ 183

Query: 160 RNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGP 219
           RNKGQFTS+KSNN++SAS  ++WG +++W  D +GSQ QDIVCRHCGISEKSTPMMRRGP
Sbjct: 184 RNKGQFTSSKSNNDESASNATNWGMDENWTADNSGSQQQDIVCRHCGISEKSTPMMRRGP 243

Query: 220 EGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAV 273
           EGPRTLCNACGLMWANKG LRDLS+AAP +G   +     EN +L+A Q++  V
Sbjct: 244 EGPRTLCNACGLMWANKGILRDLSRAAPLSGTIKN-----ENKSLEANQIVHRV 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403600|ref|NP_564593.1| GATA transcription factor 28 [Arabidopsis thaliana] gi|42571823|ref|NP_974002.1| GATA transcription factor 28 [Arabidopsis thaliana] gi|71660840|sp|Q8H1G0.1|GAT28_ARATH RecName: Full=GATA transcription factor 28; AltName: Full=Protein TIFY 2A; AltName: Full=ZIM-like 2 protein gi|23297318|gb|AAN12940.1| putative flowering protein CONSTANS [Arabidopsis thaliana] gi|38603660|dbj|BAD02931.1| GATA-type zinc finger protein [Arabidopsis thaliana] gi|332194567|gb|AEE32688.1| GATA transcription factor 28 [Arabidopsis thaliana] gi|332194568|gb|AEE32689.1| GATA transcription factor 28 [Arabidopsis thaliana]

 Score =  349 bits (896), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 184/294 (62%), Positives = 213/294 (72%), Gaps = 23/294 (7%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVM-DDEHDEGNGVGESEAMEGDAPSD 61
           HGSN +M + + Q  +H V +   H LHHI NG  M DD+ D+GN  G SE +E D PS 
Sbjct: 5   HGSNARMHIREAQDPMH-VQF-EHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSH 62

Query: 62  PGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAI 116
           PG+++DNR       SE GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P  
Sbjct: 63  PGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPG 122

Query: 117 PIANNQNNR---------------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRN 161
             + +QNNR               RLASL+RFREKRK RNF+KKIRYTVRKEVALRMQRN
Sbjct: 123 LGSPHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRN 182

Query: 162 KGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEG 221
           KGQFTSAKSNN+++ASA SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP G
Sbjct: 183 KGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAG 242

Query: 222 PRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGN 275
           PRTLCNACGLMWANKG  RDLSKA+PQ  Q   LNKNE+       Q++  V N
Sbjct: 243 PRTLCNACGLMWANKGAFRDLSKASPQTAQNLPLNKNEDANLETDHQIMITVAN 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15028099|gb|AAK76580.1| putative flowering protein CONSTANS [Arabidopsis thaliana]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 184/294 (62%), Positives = 212/294 (72%), Gaps = 23/294 (7%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVM-DDEHDEGNGVGESEAMEGDAPSD 61
           HGSN +M + + Q  +H V +   H LHHI NG  M DD+ D+GN  G SE +E D PS 
Sbjct: 5   HGSNARMHIREAQDPMH-VQF-EHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSH 62

Query: 62  PGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAI 116
           PG+++DNR       SE GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P  
Sbjct: 63  PGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPG 122

Query: 117 PIANNQNNR---------------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRN 161
             + +QNNR               RLASL+RFREKRK RNF KKIRYTVRKEVALRMQRN
Sbjct: 123 LGSPHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFGKKIRYTVRKEVALRMQRN 182

Query: 162 KGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEG 221
           KGQFTSAKSNN+++ASA SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP G
Sbjct: 183 KGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAG 242

Query: 222 PRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGN 275
           PRTLCNACGLMWANKG  RDLSKA+PQ  Q   LNKNE+       Q++  V N
Sbjct: 243 PRTLCNACGLMWANKGAFRDLSKASPQTAQNLPLNKNEDANLETDHQIMITVAN 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443335|ref|XP_002263707.1| PREDICTED: GATA transcription factor 28-like [Vitis vinifera]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/289 (64%), Positives = 216/289 (74%), Gaps = 26/289 (8%)

Query: 3   HGSNPQMQMSDEQH-AIHHVNYVPEHE--LHHISNGDVMDDEHDEGNGVGESEAMEGDAP 59
           HG+N  +   D QH  IH  +Y+ EH+  +HH+SNG  MD++HDEG      E MEGD  
Sbjct: 5   HGNNAGIHRPDGQHHPIHVQHYMQEHDHGMHHMSNGGSMDEDHDEGG---SGEGMEGDVQ 61

Query: 60  SDPGSLSDNRAV-------SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPST 112
           +DPG+L+D+R         S+  +QLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVP T
Sbjct: 62  ADPGNLADSRGALTVQPGGSDNQNQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPPT 121

Query: 113 TPAIPIANNQNN-----------RRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRN 161
            PA+ IA +               RLASLIRFREKRKERNF+KKIRYTVRKEVALRMQRN
Sbjct: 122 MPALSIAGHNRELPGTPQRYNVPHRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRN 181

Query: 162 KGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEG 221
           KGQFTS+KSN++DSAS    W S  SW    NG  NQ+IVCRHCGISEKSTPMMRRGPEG
Sbjct: 182 KGQFTSSKSNHDDSASTTPGWES--SWGMAGNGPINQEIVCRHCGISEKSTPMMRRGPEG 239

Query: 222 PRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVI 270
           PRTLCNACGLMWANKGTLRDLSKAAP+AGQ+ SLN+  ENG  + +Q++
Sbjct: 240 PRTLCNACGLMWANKGTLRDLSKAAPEAGQSPSLNQTGENGNFETDQMV 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447986|ref|XP_004141747.1| PREDICTED: GATA transcription factor 24-like [Cucumis sativus]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 176/287 (61%), Positives = 210/287 (73%), Gaps = 33/287 (11%)

Query: 3   HGSNPQMQMSDEQHAIH--HVNYVPEHELHHISNGDVMDDEHD-EGNGVGESEAMEGDAP 59
           H S+ +M +   QH++H   V     H+LH++SNG+ + DEH+ EG+G+     +E +  
Sbjct: 5   HPSDGRMHIGHAQHSMHTQSVQEQEHHDLHYMSNGNGLADEHENEGHGI---MVVEREVQ 61

Query: 60  SDPGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTP 114
           SD G L++NR V      E  DQLTLS+QGQVYVFDSVSPEKVQAVLLLLGGREVP   P
Sbjct: 62  SDHGDLAENRGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVP 121

Query: 115 AIPIANNQNNR----------------------RLASLIRFREKRKERNFEKKIRYTVRK 152
           +IPI N  N+R                      RLASLIRFREKRKERNF+KKIRYTVRK
Sbjct: 122 SIPITNQPNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRK 181

Query: 153 EVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKST 212
           EVALRMQRNKGQFTS+K  +EDS+ A++SW  N+SW+ D NGSQ Q+I+CRHCGISEKST
Sbjct: 182 EVALRMQRNKGQFTSSKPIHEDSSLAMASWEQNESWSSDGNGSQQQEILCRHCGISEKST 241

Query: 213 PMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNE 259
           PMMRRGP+GPRTLCNACGLMWANKGTLRDLSK   Q GQT++ N+NE
Sbjct: 242 PMMRRGPDGPRTLCNACGLMWANKGTLRDLSKTPNQGGQTATFNRNE 288

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491798|ref|XP_004159006.1| PREDICTED: GATA transcription factor 24-like [Cucumis sativus]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 176/287 (61%), Positives = 210/287 (73%), Gaps = 33/287 (11%)

Query: 3   HGSNPQMQMSDEQHAIH--HVNYVPEHELHHISNGDVMDDEHD-EGNGVGESEAMEGDAP 59
           H S+ +M +   QH++H   V     H+LH++SNG+ + DEH+ EG+G+     +E +  
Sbjct: 5   HPSDGRMHIGHAQHSMHTQSVQEQEHHDLHYMSNGNGLADEHENEGHGI---MVVEREVQ 61

Query: 60  SDPGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTP 114
           SD G L++NR V      E  DQLTLS+QGQVYVFDSVSPEKVQAVLLLLGGREVP   P
Sbjct: 62  SDHGDLAENRGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVP 121

Query: 115 AIPIANNQNNR----------------------RLASLIRFREKRKERNFEKKIRYTVRK 152
           +IPI N  N+R                      RLASLIRFREKRKERNF+KKIRYTVRK
Sbjct: 122 SIPITNQPNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRK 181

Query: 153 EVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKST 212
           EVALRMQRNKGQFTS+K  +EDS+ A++SW  N+SW+ D NGSQ Q+I+CRHCGISEKST
Sbjct: 182 EVALRMQRNKGQFTSSKPIHEDSSLAMASWEQNESWSSDGNGSQQQEILCRHCGISEKST 241

Query: 213 PMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNE 259
           PMMRRGP+GPRTLCNACGLMWANKGTLRDLSK   Q GQT++ N+NE
Sbjct: 242 PMMRRGPDGPRTLCNACGLMWANKGTLRDLSKTPNQGGQTATFNRNE 288

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847530|ref|XP_002891646.1| hypothetical protein ARALYDRAFT_892135 [Arabidopsis lyrata subsp. lyrata] gi|297337488|gb|EFH67905.1| hypothetical protein ARALYDRAFT_892135 [Arabidopsis lyrata subsp. lyrata]

 Score =  336 bits (861), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 187/294 (63%), Positives = 214/294 (72%), Gaps = 23/294 (7%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEH-DEGNGVGESEAMEGDAPSD 61
           HGSN +MQ   E     HV Y   H LHHI NG  M D+H D+GN  G SE +E D PS 
Sbjct: 5   HGSNSRMQHIGEAQDPMHVQY-EHHALHHIHNGSGMVDDHADDGNAGGMSEGVETDIPSH 63

Query: 62  PGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAI 116
           PG+++DNR       SE GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P  
Sbjct: 64  PGNITDNRGEVVDHGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPG 123

Query: 117 PIANNQNNR---------------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRN 161
             + +QNNR               RLASL+RFREKRK RNF+KKIRYTVRKEVALRMQRN
Sbjct: 124 LGSPHQNNRISSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRN 183

Query: 162 KGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEG 221
           KGQFTSAKSNN+++ASA SSW SNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP G
Sbjct: 184 KGQFTSAKSNNDEAASAGSSWASNQTWAIEGSEAQHQEISCRHCGIGEKSTPMMRRGPAG 243

Query: 222 PRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGN 275
           PRTLCNACGLMWANKG LRDLSKA+PQ  Q   LNKNE+   L+ +Q++  V N
Sbjct: 244 PRTLCNACGLMWANKGALRDLSKASPQTAQNLPLNKNED-ANLETDQMMITVAN 296

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686115|ref|NP_850618.1| GATA transcription factor 24 [Arabidopsis thaliana] gi|14596059|gb|AAK68757.1| Unknown protein [Arabidopsis thaliana] gi|17978695|gb|AAL47341.1| unknown protein [Arabidopsis thaliana] gi|332642950|gb|AEE76471.1| GATA transcription factor 24 [Arabidopsis thaliana]

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/296 (60%), Positives = 211/296 (71%), Gaps = 25/296 (8%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDP 62
           HG N +M +   Q+ +H V Y  +H LHHI N + M D+H +G   G  E +E D PS P
Sbjct: 5   HGRNGRMHIGVAQNPMH-VQY-EDHGLHHIDNENSMMDDHADG---GMDEGVETDIPSHP 59

Query: 63  GSLSDNRAVS-----EIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIP 117
           G+ +DNR        E GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P   
Sbjct: 60  GNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTL 119

Query: 118 IANNQNNR-------------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQ 164
            + +QNNR             RLASL+RFREKRK RNF+K IRYTVRKEVALRMQR KGQ
Sbjct: 120 GSPHQNNRGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQ 179

Query: 165 FTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRT 224
           FTSAKS+N+DS S  S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GPRT
Sbjct: 180 FTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRT 239

Query: 225 LCNACGLMWANKGTLRDLSKA-APQAGQTSSLNKNEENGTLKAEQVIRAVGNINGS 279
           LCNACGLMWANKGTLRDLSK   PQ  Q  SLNKNE+   L+A+Q++   G+I+ +
Sbjct: 240 LCNACGLMWANKGTLRDLSKVPPPQTPQHLSLNKNED-ANLEADQMMEVTGDISNT 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402914|ref|NP_566676.1| GATA transcription factor 24 [Arabidopsis thaliana] gi|71660846|sp|Q8GXL7.2|GAT24_ARATH RecName: Full=GATA transcription factor 24; AltName: Full=Protein TIFY 2B; AltName: Full=ZIM-like 1 protein gi|9280218|dbj|BAB01708.1| unnamed protein product [Arabidopsis thaliana] gi|38603658|dbj|BAD02930.1| GATA-type zinc finger protein [Arabidopsis thaliana] gi|332642949|gb|AEE76470.1| GATA transcription factor 24 [Arabidopsis thaliana]

 Score =  330 bits (847), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 180/298 (60%), Positives = 211/298 (70%), Gaps = 27/298 (9%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDP 62
           HG N +M +   Q+ +H V Y  +H LHHI N + M D+H +G   G  E +E D PS P
Sbjct: 5   HGRNGRMHIGVAQNPMH-VQY-EDHGLHHIDNENSMMDDHADG---GMDEGVETDIPSHP 59

Query: 63  GSLSDNRAVS-----EIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIP 117
           G+ +DNR        E GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P   
Sbjct: 60  GNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTL 119

Query: 118 IANNQNNR---------------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNK 162
            + +QNNR               RLASL+RFREKRK RNF+K IRYTVRKEVALRMQR K
Sbjct: 120 GSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKK 179

Query: 163 GQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGP 222
           GQFTSAKS+N+DS S  S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GP
Sbjct: 180 GQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGP 239

Query: 223 RTLCNACGLMWANKGTLRDLSKA-APQAGQTSSLNKNEENGTLKAEQVIRAVGNINGS 279
           RTLCNACGLMWANKGTLRDLSK   PQ  Q  SLNKNE+   L+A+Q++   G+I+ +
Sbjct: 240 RTLCNACGLMWANKGTLRDLSKVPPPQTPQHLSLNKNED-ANLEADQMMEVTGDISNT 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537322|gb|AAM61663.1| flowering protein CONSTANS, putative [Arabidopsis thaliana]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 179/295 (60%), Positives = 209/295 (70%), Gaps = 27/295 (9%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDP 62
           HG N +M +   Q+ +H V Y  +H LHHI N + M D+H +G   G  E +E D PS P
Sbjct: 5   HGRNGRMHIGVAQNPMH-VQY-EDHGLHHIDNENGMMDDHADG---GMDEGVETDIPSHP 59

Query: 63  GSLSDNRAVS-----EIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIP 117
           G+ +DNR        E GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P   
Sbjct: 60  GNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTL 119

Query: 118 IANNQNNR---------------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNK 162
            + +QNNR               RLASL+RFREKRK RNF+K IRYTVRKEVALRMQR K
Sbjct: 120 GSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKK 179

Query: 163 GQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGP 222
           GQFTSAKS+N+DS S  S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GP
Sbjct: 180 GQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGP 239

Query: 223 RTLCNACGLMWANKGTLRDLSKA-APQAGQTSSLNKNEENGTLKAEQVIRAVGNI 276
           RTLCNACGLMWANKGTLRDLSK   PQ  Q  S+NKNE+   L+A+Q++   G+I
Sbjct: 240 RTLCNACGLMWANKGTLRDLSKVPPPQTPQHLSVNKNED-ANLEADQMMEVTGDI 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
TAIR|locus:505006360	297	ZML1 "ZIM-like 1" [Arabidopsis	0.975	0.919	0.533	3.5e-68
TAIR|locus:2017582	302	ZML2 "ZIM-LIKE 2" [Arabidopsis	0.925	0.857	0.536	2e-65
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.232	0.436	0.385	6.4e-08
CGD|CAL0005605	442	orf19.1577 [Candida albicans (	0.278	0.176	0.418	7.7e-07
UNIPROTKB|Q5ALK1	442	CaO19.1577 "Putative uncharact	0.278	0.176	0.418	7.7e-07
CGD|CAL0004848	446	BRG1 [Candida albicans (taxid:	0.292	0.183	0.408	3e-06
UNIPROTKB|Q59LY1	446	GAT2 "Putative uncharacterized	0.292	0.183	0.408	3e-06
DICTYBASE|DDB_G0267640	952	gtaE "GATA zinc finger domain-	0.264	0.077	0.395	6.7e-06
TAIR|locus:2145259	331	GATA12 "GATA transcription fac	0.196	0.166	0.416	1.2e-05
TAIR|locus:2062095	208	GATA20 "GATA transcription fac	0.346	0.466	0.303	5.9e-05

TAIR|locus:505006360 ZML1 "ZIM-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 158/296 (53%), Positives = 190/296 (64%)

Query:     3 HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVG-ESE--AMEGDAP 59
             HG N +M +   Q+ +H V Y      H  +   +MDD  D G   G E++  +  G++ 
Sbjct:     5 HGRNGRMHIGVAQNPMH-VQYEDHGLHHIDNENSMMDDHADGGMDEGVETDIPSHPGNSA 63

Query:    60 SDPGSLSDNRAVSEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIA 119
              + G + D R + E GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P    +
Sbjct:    64 DNRGEVVD-RGI-ENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGS 121

Query:   120 NNQNNR---------------RLASLXXXXXXXXXXXXXXXXXYTVRKEVALRMQRNKGQ 164
              +QNNR               RLASL                 YTVRKEVALRMQR KGQ
Sbjct:   122 PHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQ 181

Query:   165 FTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRT 224
             FTSAKS+N+DS S  S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GPRT
Sbjct:   182 FTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRT 241

Query:   225 LCNACGLMWANKGTLRDLSKAAP-QAGQTSSLNKNEENGTLKAEQVIRAVGNINGS 279
             LCNACGLMWANKGTLRDLSK  P Q  Q  SLNKNE+   L+A+Q++   G+I+ +
Sbjct:   242 LCNACGLMWANKGTLRDLSKVPPPQTPQHLSLNKNED-ANLEADQMMEVTGDISNT 296

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2017582 ZML2 "ZIM-LIKE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 153/285 (53%), Positives = 181/285 (63%)

Query:     9 MQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVG-ESE--AMEGDAPSDPGSL 65
             M +  E HA+HH+     H    + + D  DD +  G   G E++  +  G+   + G +
Sbjct:    20 MHVQFEHHALHHI-----HNGSGMVD-DQADDGNAGGMSEGVETDIPSHPGNVTDNRGEV 73

Query:    66 SDNRAVSEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNR 125
              D    SE GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P    + +QNNR
Sbjct:    74 VDRG--SEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNR 131

Query:   126 ---------------RLASLXXXXXXXXXXXXXXXXXYTVRKEVALRMQRNKGQFTSAKS 170
                            RLASL                 YTVRKEVALRMQRNKGQFTSAKS
Sbjct:   132 VSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKS 191

Query:   171 NNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACG 230
             NN+++ASA SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP GPRTLCNACG
Sbjct:   192 NNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACG 251

Query:   231 LMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGN 275
             LMWANKG  RDLSKA+PQ  Q   LNKNE+       Q++  V N
Sbjct:   252 LMWANKGAFRDLSKASPQTAQNLPLNKNEDANLETDHQIMITVAN 296

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
 Identities = 27/70 (38%), Positives = 39/70 (55%)

Query:   197 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLN 256
             N+   C  CG S+  TP+ R GP GP++LCNACG+   N+   R L     +  +  S N
Sbjct:    38 NEKKSCAICGTSK--TPLWRGGPAGPKSLCNACGIR--NRKKRRTLISNRSEDKKKKSHN 93

Query:   257 KNEENG-TLK 265
             +N + G +LK
Sbjct:    94 RNPKFGDSLK 103

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

CGD|CAL0005605 orf19.1577 [Candida albicans (taxid:5476)]

 Score = 139 (54.0 bits), Expect = 7.7e-07, P = 7.7e-07
 Identities = 36/86 (41%), Positives = 48/86 (55%)

Query:   176 ASAISSWGSNQSWAGDVNG--SQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMW 233
             A  +S+  SN +  G++N   S   +I C+HC   E  TP  RRGPEG RTLCNACGL +
Sbjct:   355 AQTLSAVTSNLT-NGNLNTELSAKPEITCQHCCSQE--TPEWRRGPEGSRTLCNACGLFY 411

Query:   234 AN---KGTLRDLSKAAPQAGQTSSLN 256
             +    K  LR+  K      QT ++N
Sbjct:   412 SKLIKKYGLREADKVMLHRKQTGTVN 437

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5ALK1 CaO19.1577 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 139 (54.0 bits), Expect = 7.7e-07, P = 7.7e-07
 Identities = 36/86 (41%), Positives = 48/86 (55%)

Query:   176 ASAISSWGSNQSWAGDVNG--SQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMW 233
             A  +S+  SN +  G++N   S   +I C+HC   E  TP  RRGPEG RTLCNACGL +
Sbjct:   355 AQTLSAVTSNLT-NGNLNTELSAKPEITCQHCCSQE--TPEWRRGPEGSRTLCNACGLFY 411

Query:   234 AN---KGTLRDLSKAAPQAGQTSSLN 256
             +    K  LR+  K      QT ++N
Sbjct:   412 SKLIKKYGLREADKVMLHRKQTGTVN 437

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0004848 BRG1 [Candida albicans (taxid:5476)]

 Score = 134 (52.2 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 40/98 (40%), Positives = 51/98 (52%)

Query:   192 VNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQA-- 249
             VN S N+   C  CG +E  TP  RRGP+G RTLCNACGL  A     +  + AA +   
Sbjct:   276 VNKSTNR---CHRCGTTE--TPEWRRGPKGVRTLCNACGLFHAKLVKRKGAALAAEEVLN 330

Query:   250 --------GQTSSLNKNEENGTLKAEQVIRAVG-NING 278
                     G+  S+ K+  N +LK +Q I  VG  ING
Sbjct:   331 NKVTKGKNGRRISMKKHLLNESLKQQQQINGVGIPING 368

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900430 "positive regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0044011 "single-species biofilm formation on inanimate substrate" evidence=IMP

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:1900233 "positive regulation of single-species biofilm formation on inanimate substrate" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

UNIPROTKB|Q59LY1 GAT2 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 134 (52.2 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 40/98 (40%), Positives = 51/98 (52%)

Query:   192 VNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQA-- 249
             VN S N+   C  CG +E  TP  RRGP+G RTLCNACGL  A     +  + AA +   
Sbjct:   276 VNKSTNR---CHRCGTTE--TPEWRRGPKGVRTLCNACGLFHAKLVKRKGAALAAEEVLN 330

Query:   250 --------GQTSSLNKNEENGTLKAEQVIRAVG-NING 278
                     G+  S+ K+  N +LK +Q I  VG  ING
Sbjct:   331 NKVTKGKNGRRISMKKHLLNESLKQQQQINGVGIPING 368

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0044011 "single-species biofilm formation on inanimate substrate" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:1900233 "positive regulation of single-species biofilm formation on inanimate substrate" evidence=IMP

GO:1900430 "positive regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

DICTYBASE|DDB_G0267640 gtaE "GATA zinc finger domain-containing protein 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 135 (52.6 bits), Expect = 6.7e-06, P = 6.7e-06
 Identities = 32/81 (39%), Positives = 45/81 (55%)

Query:   202 CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEEN 261
             C  C  S  +TP  R+GPEGP TLCNACGL +A K   + L+K   +  Q++++N N  N
Sbjct:   241 CYQCNTS--NTPEWRKGPEGPATLCNACGLAYAKK---QKLTKNNIKFNQSTNVNNNTNN 295

Query:   262 GTLKAEQVIRAVG--NINGST 280
                +  Q I   G  N+  +T
Sbjct:   296 TITQLNQQINNQGLPNLTSTT 316

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2145259 GATA12 "GATA transcription factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query:   202 CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEEN 261
             C HC  ++K TP  R GP GP+TLCNACG+ + + G L  + +  P A  T  L K+  +
Sbjct:   221 CLHCA-TDK-TPQWRTGPMGPKTLCNACGVRYKS-GRL--VPEYRPAASPTFVLAKHSNS 275

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2062095 GATA20 "GATA transcription factor 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 5.9e-05, P = 5.9e-05
 Identities = 31/102 (30%), Positives = 47/102 (46%)

Query:   164 QFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPR 223
             +F+SA SNN      I   G N   +    G     +  R       STP+ R GP+GP+
Sbjct:    56 RFSSANSNNISGDFYIH--GGNAKTSSYKKGGVAHSLPRRCASCDTTSTPLWRNGPKGPK 113

Query:   224 TLCNACGLMWAN---KGTLRDLSKAAPQAGQTSSLNKNEENG 262
             +LCNACG+ +     + T R+L+ +   +       +N  NG
Sbjct:   114 SLCNACGIRFKKEERRATARNLTISGGGSSAAEVPVENSYNG 155

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H1G0	GAT28_ARATH	No assigned EC number	0.6258	0.9678	0.8973	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	TIFY2A	TIFY2A; sequence-specific DNA binding / transcription factor/ zinc ion binding; member of a novel family of plant-specific GATA-type transcription factors. ; Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity) (302 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	GNC	GNC (GATA, nitrate-inducible, carbon metabolism-involved); transcription factor; GATA, nitrate- [...] (398 aa)					•		•	•	0.935
	ZML1	ZML1 (ZIM-LIKE 1); sequence-specific DNA binding / transcription factor/ zinc ion binding; memb [...] (297 aa)					•		•	•	0.925
	AT5G58575	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (181 aa)					•				0.923
	ACR6	ACR6; amino acid binding; Member of a small family of ACT domain containing proteins in Arabido [...] (433 aa)					•				0.923
	AT5G63230	unknown protein; glycosyl hydrolase family protein 17 (111 aa)							•		0.746
	AT5G63225	unknown protein; glycosyl hydrolase family protein 17 (110 aa)							•		0.746
	TIFY8	TIFY8 (TIFY DOMAIN PROTEIN 8); TIFY DOMAIN PROTEIN 8 (TIFY8); FUNCTIONS IN- molecular_function [...] (361 aa)							•		0.679
	AT3G55430	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative; glycosyl hydrolase family [...] (449 aa)							•		0.679
	GATL10	GATL10 (Galacturonosyltransferase-like 10); polygalacturonate 4-alpha-galacturonosyltransferase [...] (365 aa)							•		0.595
	AT3G20750	zinc finger (GATA type) family protein; zinc finger (GATA type) family protein; FUNCTIONS IN- t [...] (208 aa)							•		0.565

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	280
pfam06203	45	pfam06203, CCT, CCT motif	4e-19
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	1e-13
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	2e-13
pfam00320	36	pfam00320, GATA, GATA zinc finger	4e-13
pfam06200	36	pfam06200, tify, tify domain	9e-11
smart00979	36	smart00979, TIFY, This short possible domain is fo	6e-10
pfam09425	27	pfam09425, CCT_2, Divergent CCT motif	3e-05

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 78.0 bits (193), Expect = 4e-19
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 126 RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKS 170
           R A+L+R++EKRK R F+KKIRY  RK VA    R KG+F     
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQSE 45

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 63.5 bits (155), Expect = 1e-13
 Identities = 24/44 (54%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 201 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK 244
            C +CG    +TP+ RRGP G  TLCNACGL W   G +R LSK
Sbjct: 1   ACSNCG--TTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSK 42

Length = 54

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 62.8 bits (153), Expect = 2e-13
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 197 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLR 240
                C +CG +E  TP+ RRGP G +TLCNACGL +   G L+
Sbjct: 1   GSGRSCSNCGTTE--TPLWRRGPSGNKTLCNACGLYYKKHGGLK 42

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 61.9 bits (151), Expect = 4e-13
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)

Query: 202 CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 239
           C +CG ++  TP+ RRGP+G RTLCNACGL +   G  
Sbjct: 1   CSNCGTTK--TPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|203405 pfam06200, tify, tify domain

 Score = 55.6 bits (135), Expect = 9e-11
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 76  DQLTLSFQGQVYVFDSVSPEKVQAVLLLLGG 106
            QLT+ + GQV VFD V PEK Q ++ L   
Sbjct: 6   AQLTIFYGGQVCVFDDVPPEKAQEIMRLASR 36

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|198047 smart00979, TIFY, This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

 Score = 53.0 bits (128), Expect = 6e-10
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 72  SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGG 106
            E   QLT+ + G V VFD V PEK Q ++ L G 
Sbjct: 2   PEGSQQLTIFYGGSVCVFDDVPPEKAQEIMSLAGN 36

Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|117965 pfam09425, CCT_2, Divergent CCT motif

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 7/34 (20%)

Query: 117 PIANNQNNRRLASLIRFREKRKERNFEKKIRYTV 150
           PIA      R ASL RF EKRK+R       Y V
Sbjct: 1   PIA------RKASLQRFLEKRKDRLV-SAAPYQV 27

This short motif is found in a number of plant proteins. It appears to be related to the N-terminal half of the CCT motif. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.57
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.51
PF06200	36	tify: tify domain; InterPro: IPR010399 The tify do	99.48
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.45
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.39
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.65
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.27
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	98.12
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	92.64
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	86.57

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.57  E-value=1.2e-15  Score=110.36  Aligned_cols=44  Identities=55%  Similarity=1.175  Sum_probs=41.5

Q ss_pred             cccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCC
Q 023560          201 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA  246 (280)
Q Consensus       201 ~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~  246 (280)
                      .|+||++  +.||+||+||.+..+|||||||||++++..||+.+..
T Consensus         1 ~C~~C~~--~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGT--TTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRK   44 (54)
T ss_pred             CCCCCCC--CCCcccccCCCCcchHHHHHHHHHHhcCCCCCcccCc
Confidence            4999999  7999999999888999999999999999999999876

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.51  E-value=7.2e-15  Score=105.36  Aligned_cols=46  Identities=50%  Similarity=1.007  Sum_probs=41.6

Q ss_pred             cccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCC-CCCCcCC
Q 023560          199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL-RDLSKAA  246 (280)
Q Consensus       199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~-r~~~~~~  246 (280)
                      ...|++|++  +.||+||+||.|.++|||||||||++++.+ ||+.+..
T Consensus         3 ~~~C~~C~~--~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~~~   49 (52)
T smart00401        3 GRSCSNCGT--TETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKK   49 (52)
T ss_pred             CCCcCCCCC--CCCCccccCCCCCCcEeecccHHHHHcCCCCCcccccc
Confidence            467999999  789999999999889999999999999998 8877654

>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants)

Probab=99.48  E-value=5.4e-14  Score=93.95  Aligned_cols=34  Identities=47%  Similarity=0.705  Sum_probs=31.9

Q ss_pred             CCCCCceEEEeccEEeeecCCCHHHHHHHHHHhC
Q 023560           72 SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLG  105 (280)
Q Consensus        72 ~~~~aqLTify~G~v~Vfd~v~p~Kaq~im~la~  105 (280)
                      .+.++||||||+|+|+|||+||++||++||+||+
T Consensus         2 ~~~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA~   35 (36)
T PF06200_consen    2 SPETAQLTIFYGGQVCVFDDVPPDKAQEIMLLAS   35 (36)
T ss_pred             CCCCCcEEEEECCEEEEeCCCCHHHHHHHHHHhc
Confidence            3578999999999999999999999999999996

It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.45  E-value=1.6e-14  Score=96.18  Aligned_cols=36  Identities=56%  Similarity=1.214  Sum_probs=28.4

Q ss_pred             ccccccccCCCCceecCCCCCCccchhhhHhHHhcCCC
Q 023560          202 CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL  239 (280)
Q Consensus       202 C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~  239 (280)
                      |++|++  +.||+||++|.|..+|||||||+|++++++
T Consensus         1 C~~C~t--t~t~~WR~~~~g~~~LCn~Cg~~~kk~~~~   36 (36)
T PF00320_consen    1 CSNCGT--TETPQWRRGPNGNRTLCNACGLYYKKYGKM   36 (36)
T ss_dssp             -TTT----ST-SSEEEETTSEE-EEHHHHHHHHHHSS-
T ss_pred             CcCCcC--CCCchhhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            899999  789999999999888999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.39  E-value=1.5e-13  Score=95.93  Aligned_cols=44  Identities=57%  Similarity=0.801  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhhhhcccccccchhhHHHHHHHhhccccccccc
Q 023560          126 RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAK  169 (280)
Q Consensus       126 R~asl~r~~eKrk~r~f~kkirY~~RK~~A~~rpR~KGrf~s~k  169 (280)
                      |.++|+||++||+.|+|.|+|+|++||.+|+.|||+||+|++..
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~   44 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKS   44 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCC
Confidence            67899999999999999999999999999999999999999864

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.65  E-value=1.6e-08  Score=88.58  Aligned_cols=52  Identities=44%  Similarity=0.940  Sum_probs=45.0

Q ss_pred             cccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCCCCCCCC
Q 023560          199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQT  252 (280)
Q Consensus       199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~~~~~~~  252 (280)
                      ...|.+|++  +.||+||++|.|++++|||||++|++++..|++.++.......
T Consensus       199 ~~~c~~~~~--~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~~~~~~  250 (340)
T KOG1601|consen  199 LRQCSNCGT--TKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRPASSPR  250 (340)
T ss_pred             CcccCCCCC--CCCcceecCCCCCccccccchhhhhhcCccccccccCcccccc
Confidence            579999999  7999999999999999999999999998778877777654433

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.27  E-value=2.5e-07  Score=92.83  Aligned_cols=50  Identities=40%  Similarity=0.725  Sum_probs=43.3

Q ss_pred             ccccccccccccCCCCceecCCC-----CCCccchhhhHhHHhcCCCC-CCCcCCCCCC
Q 023560          198 QDIVCRHCGISEKSTPMMRRGPE-----GPRTLCNACGLMWANKGTLR-DLSKAAPQAG  250 (280)
Q Consensus       198 ~~~~C~~Cg~~~~~Tp~wR~Gp~-----G~~~LCNACGl~~~~~g~~r-~~~~~~~~~~  250 (280)
                      ...+|.||.+  +.||+|||+..     | -.|||||||+|+.||++| |+..+.-..-
T Consensus       157 ~~~vc~Nc~t--~stPlwrR~~~~~s~~~-n~lcnaCgl~~klhg~~r~P~t~ks~~~k  212 (498)
T COG5641         157 QPHVCSNCKT--TSTPLWRRASSESSLPG-NNLCNACGLYLKLHGSPRAPISLKSDSIK  212 (498)
T ss_pred             ccchhccccc--cCCccccccccccccCC-ccccccccccccccCCcCCCccccccccc
Confidence            3349999999  78999999999     6 599999999999999999 8888765443

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=98.12  E-value=1.3e-06  Score=54.99  Aligned_cols=26  Identities=50%  Similarity=0.508  Sum_probs=10.0

Q ss_pred             hHHHHHHHHHHHHHhhhhcccccccch
Q 023560          123 NNRRLASLIRFREKRKERNFEKKIRYT  149 (280)
Q Consensus       123 ~~~R~asl~r~~eKrk~r~f~kkirY~  149 (280)
                      |++|++||+||+||||+|+.. +..|.
T Consensus         1 P~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    1 PIARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             -----HHHHHHHHHH------------
T ss_pred             CchHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            578999999999999999988 55564

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=92.64  E-value=0.061  Score=54.71  Aligned_cols=51  Identities=25%  Similarity=0.285  Sum_probs=43.7

Q ss_pred             CccccccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCC
Q 023560          195 SQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA  246 (280)
Q Consensus       195 ~~~~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~  246 (280)
                      ..+....|.+|.+. +.||.||+...-.-.+|||||++.+..+..||+..+.
T Consensus       293 ~~ps~~~~s~~~~~-~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~pk~  343 (498)
T COG5641         293 VLPSDKKRSTLTTS-TATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKP  343 (498)
T ss_pred             cchhhcCccccccc-ccCcccccccccccccccccccccCCcccccccCCCC
Confidence            34557889999987 6899999988776799999999999999999998854

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=86.57  E-value=2.2  Score=43.55  Aligned_cols=37  Identities=24%  Similarity=0.599  Sum_probs=29.2

Q ss_pred             cccccccccccCCCCceec-CC-CCCCccchhhhHhHHhcC
Q 023560          199 DIVCRHCGISEKSTPMMRR-GP-EGPRTLCNACGLMWANKG  237 (280)
Q Consensus       199 ~~~C~~Cg~~~~~Tp~wR~-Gp-~G~~~LCNACGl~~~~~g  237 (280)
                      .+.|.+|++  ++.-.|=. || .-...||--|=+||+|.|
T Consensus       386 g~~CEsC~t--tqs~qWYsWGppnmqcrLCasCWiyWKKyg  424 (693)
T KOG3554|consen  386 GRACESCYT--TQSLQWYSWGPPNMQCRLCASCWIYWKKYG  424 (693)
T ss_pred             CCccccccc--ccccceeccCCCCccchhhHHHHHHHHHhc
Confidence            678999999  67777754 44 444479999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	280
4gat_A	66	Solution Nmr Structure Of The Wild Type Dna Binding		1e-04
7gat_A	66	Solution Nmr Structure Of The L22v Mutant Dna Bindi		2e-04

>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain Of Area Complexed To A 13bp Dna Containing A Cgata Site, Regularized Mean Structure Length = 66

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 193 NGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 243
           NG QN    C +C    ++TP+ RR PEG + LCNACGL     G +R LS
Sbjct: 3   NGEQNGPTTCTNC--FTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 50

>pdb|7GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding Domain Of Area Complexed To A 13 Bp Dna Containing A Tgata Site, 34 Structures Length = 66

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 193 NGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 243
           NG QN    C +C    ++TP+ RR PEG + LCNACGL     G +R LS
Sbjct: 3   NGEQNGPTTCTNC--FTQTTPVWRRNPEG-QPLCNACGLFLKLHGVVRPLS 50

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	280
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	5e-12
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	7e-10
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	1e-09
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	8e-09
3dfx_A	63	Trans-acting T-cell-specific transcription factor	2e-08

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 59.1 bits (143), Expect = 5e-12
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 194 GSQN--QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQ 251
           GS    +   C +C ++E  T   R         CNAC +        R ++  A    Q
Sbjct: 1   GSHMNKKSFQCSNCSVTE--TIRWRNIRSKEGIQCNACFIYQRKYNKTRPVT--AVNKYQ 56

Query: 252 TSSLNKNEENGT 263
              L   E NG 
Sbjct: 57  KRKLKVQETNGV 68

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 53.1 bits (127), Expect = 7e-10
 Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 193 NGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 243
           NG QN    C +C      TP+ RR PEG + LCNACGL     G +R LS
Sbjct: 3   NGEQNGPTTCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 50

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 197 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK 244
           ++   C +CG +   TP+ RR   G   LCNACGL     G  R L +
Sbjct: 2   SEARECVNCGATA--TPLWRRDRTG-HYLCNACGLYHKMNGQNRPLIR 46

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 49.8 bits (119), Expect = 8e-09
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 200 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 243
             C +C      TP+ RR PEG + LCNACGL     G +R LS
Sbjct: 2   TTCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 42

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 193 NGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 243
           + ++     C +C  +   T + RR   G   +CNACGL +      R L+
Sbjct: 1   SAARRAGTSCANCQTTT--TTLWRRNANG-DPVCNACGLYYKLHNINRPLT 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	280
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.71
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.71
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.68
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.65
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.57
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.49
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.33
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	98.11
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	97.37

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.71  E-value=3.5e-18  Score=118.89  Aligned_cols=43  Identities=42%  Similarity=0.791  Sum_probs=40.2

Q ss_pred             cccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCc
Q 023560          199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK  244 (280)
Q Consensus       199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~  244 (280)
                      ...|.+|++  +.||+||+||+|+ +|||||||||++++++||+++
T Consensus         4 ~~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~   46 (46)
T 1gnf_A            4 ARECVNCGA--TATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR   46 (46)
T ss_dssp             SCCCTTTCC--CCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred             CCCCCCcCC--CCCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence            467999999  7899999999996 999999999999999999975

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.71  E-value=2.3e-18  Score=118.19  Aligned_cols=42  Identities=48%  Similarity=0.939  Sum_probs=39.5

Q ss_pred             ccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCc
Q 023560          200 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK  244 (280)
Q Consensus       200 ~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~  244 (280)
                      ..|.+|++  +.||+||+||+|+ +|||||||+|++++++||+++
T Consensus         2 ~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l   43 (43)
T 2vut_I            2 TTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL   43 (43)
T ss_dssp             CCCSSSCC--CCCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred             CcCCccCC--CCCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence            56999999  7899999999996 999999999999999999975

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.68  E-value=1.9e-17  Score=122.15  Aligned_cols=47  Identities=30%  Similarity=0.641  Sum_probs=43.1

Q ss_pred             cccccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCC
Q 023560          197 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA  246 (280)
Q Consensus       197 ~~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~  246 (280)
                      .....|.+|++  +.||+||+||+|+ +|||||||||++++++||++++.
T Consensus         5 ~~~~~C~~C~t--t~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~   51 (63)
T 3dfx_A            5 RAGTSCANCQT--TTTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKK   51 (63)
T ss_dssp             CTTCCCTTTCC--SCCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCC
T ss_pred             CCCCcCCCcCC--CCCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCC
Confidence            34577999999  7899999999997 99999999999999999999874

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.65  E-value=4.1e-17  Score=121.45  Aligned_cols=47  Identities=43%  Similarity=0.824  Sum_probs=43.4

Q ss_pred             ccccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCCC
Q 023560          198 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAP  247 (280)
Q Consensus       198 ~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~~  247 (280)
                      ....|.+|++  +.||+||+||+|. +|||||||||++++++||++++..
T Consensus         8 ~~~~C~~C~t--~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~   54 (66)
T 4gat_A            8 GPTTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTD   54 (66)
T ss_dssp             SSCCCTTTCC--CCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCS
T ss_pred             CCCCCCCCCC--CCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccc
Confidence            4578999999  7899999999996 999999999999999999999763

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.57  E-value=3.9e-16  Score=117.64  Aligned_cols=47  Identities=19%  Similarity=0.352  Sum_probs=40.1

Q ss_pred             ccccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCC
Q 023560          198 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA  246 (280)
Q Consensus       198 ~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~  246 (280)
                      ....|+||++  +.||+||+||....+|||||||||++++++||+++..
T Consensus         7 ~~~~C~nC~t--t~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~   53 (71)
T 2kae_A            7 KSFQCSNCSV--TETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVN   53 (71)
T ss_dssp             -CCCCSSSCC--SCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHH
T ss_pred             CCCcCCccCC--CCCCccccCCCCCCccchHHHHHHHHhCCCCCcccch
Confidence            4578999999  7899999954444499999999999999999998864

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.49  E-value=1.5e-14  Score=118.18  Aligned_cols=46  Identities=30%  Similarity=0.654  Sum_probs=42.8

Q ss_pred             cccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCCC
Q 023560          199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAP  247 (280)
Q Consensus       199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~~  247 (280)
                      ...|++|++  +.||+||+||+| ++|||||||||++++++||++++..
T Consensus        59 ~~~C~~C~t--~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~  104 (115)
T 4hc9_A           59 GTSCANCQT--TTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKE  104 (115)
T ss_dssp             TCCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCS
T ss_pred             cccCCCcCC--CCcceeEECCCC-CCcchHHHHHHHHhCCCCCcccccc
Confidence            478999999  789999999999 8999999999999999999999753

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.33  E-value=7.2e-13  Score=108.16  Aligned_cols=45  Identities=44%  Similarity=0.778  Sum_probs=40.6

Q ss_pred             cccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCC
Q 023560          199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA  246 (280)
Q Consensus       199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~  246 (280)
                      ...|.||++  +.||+||+||+| .+|||||||||++++++||+.+..
T Consensus         5 ~~~C~~Cg~--~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpK   49 (115)
T 4hc9_A            5 GRECVNCGA--TSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPK   49 (115)
T ss_dssp             -CCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCC
T ss_pred             CCCCCCCCC--ccCCcceECCCC-CCcCcchhhhhhhccccccccccc
Confidence            578999999  789999999999 699999999999999999987644

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=97.37  E-value=4.8e-05  Score=44.89  Aligned_cols=20  Identities=60%  Similarity=0.652  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHhhhhccccc
Q 023560          126 RLASLIRFREKRKERNFEKK  145 (280)
Q Consensus       126 R~asl~r~~eKrk~r~f~kk  145 (280)
                      |++||+||+||||+|+..+.
T Consensus         1 Rk~SLqRFleKRk~R~~~~~   20 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDRVTSKA   20 (26)
T ss_pred             CchhHHHHHHHHHHHhhccC
Confidence            68999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	280
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	8e-12
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	8e-11
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	2e-09

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 56.7 bits (137), Expect = 8e-12
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 201 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 243
            C +C      TP+ RR PEG + LCNACGL     G +R LS
Sbjct: 2   TCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 41

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (130), Expect = 8e-11
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 202 CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT 238
           C +CG +   TP+ RR   G   LCNACGL     G 
Sbjct: 5   CVNCGATA--TPLWRRDRTG-HYLCNACGLYHKMNGQ 38

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.8 bits (121), Expect = 2e-09
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 196 QNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSL 255
           +    VC +C  S   T + RR P G   +CNACGL +      R L+         +  
Sbjct: 1   KRAGTVCSNCQTST--TTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRK 57

Query: 256 NKNEEN 261
             ++  
Sbjct: 58  VSSKGK 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	280
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.77
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.67
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.67

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.77  E-value=4.6e-20  Score=123.93  Aligned_cols=41  Identities=49%  Similarity=0.980  Sum_probs=39.0

Q ss_pred             cccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCc
Q 023560          201 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK  244 (280)
Q Consensus       201 ~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~  244 (280)
                      .|+||++  +.||+||+||+| ++|||||||||++++++||++|
T Consensus         2 ~C~nC~t--t~Tp~WRr~~~G-~~lCNACGl~~k~~g~~RP~sl   42 (42)
T d2vuti1           2 TCTNCFT--QTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSL   42 (42)
T ss_dssp             CCSSSCC--CCCSCCEECTTS-CEECHHHHHHHHHHSSCCCCCC
T ss_pred             cCCCCCC--CCCccceeCCCC-CCchhhhhHHHHHcCCCCCCCC
Confidence            5999999  789999999999 7999999999999999999986

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=8.5e-18  Score=123.28  Aligned_cols=46  Identities=35%  Similarity=0.712  Sum_probs=42.0

Q ss_pred             cccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCCC
Q 023560          199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAP  247 (280)
Q Consensus       199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~~  247 (280)
                      ...|+||++  +.||+||+||+| .+|||||||||+++++.||+.+...
T Consensus         4 g~~C~nCgt--~~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~~~~~   49 (66)
T d3gata_           4 GTVCSNCQT--STTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKD   49 (66)
T ss_dssp             TCCCTTTCC--CCCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGGGCCS
T ss_pred             CCCCCCCCC--CCCcccccCCCC-CcccchhHHHHHHhCCcCCcccccc
Confidence            467999999  789999999999 6999999999999999999987653

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=6.4e-18  Score=111.73  Aligned_cols=38  Identities=42%  Similarity=0.832  Sum_probs=34.7

Q ss_pred             cccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCC
Q 023560          199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL  239 (280)
Q Consensus       199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~  239 (280)
                      .+.|++|++  +.||+||+||+| ++|||||||||++||+.
T Consensus         2 ~r~C~~Cgt--t~Tp~WR~gp~G-~~LCNACGl~~r~~G~n   39 (39)
T d1y0ja1           2 ARECVNCGA--TATPLWRRDRTG-HYLCNACGLYHKMNGQN   39 (39)
T ss_dssp             CCCCSSSCC--CCCSCCEECTTS-CEECSSHHHHHHHSCCC
T ss_pred             cCCCCCCCC--CCCcccccCCCC-CEeeHHhHHHHHHhCCC
Confidence            367999999  789999999999 69999999999999863