Citrus Sinensis ID: 023562
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 280 | 2.2.26 [Sep-21-2011] | |||||||
| Q5PP70 | 276 | Alpha N-terminal protein | no | no | 0.721 | 0.731 | 0.730 | 8e-86 | |
| A2XMJ1 | 307 | Alpha N-terminal protein | N/A | no | 0.732 | 0.667 | 0.574 | 3e-75 | |
| Q10CT5 | 307 | Alpha N-terminal protein | no | no | 0.732 | 0.667 | 0.570 | 3e-74 | |
| Q4KL94 | 224 | N-terminal Xaa-Pro-Lys N- | N/A | no | 0.614 | 0.767 | 0.444 | 2e-41 | |
| B1H2P7 | 224 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.614 | 0.767 | 0.444 | 2e-41 | |
| Q6NWX7 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.596 | 0.748 | 0.465 | 5e-41 | |
| Q4KLE6 | 223 | N-terminal Xaa-Pro-Lys N- | N/A | no | 0.610 | 0.766 | 0.433 | 7e-41 | |
| Q8R2U4 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.607 | 0.762 | 0.435 | 8e-39 | |
| Q9BV86 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.607 | 0.762 | 0.441 | 2e-38 | |
| Q2T9N3 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.607 | 0.762 | 0.446 | 2e-38 |
| >sp|Q5PP70|NTM1_ARATH Alpha N-terminal protein methyltransferase 1 OS=Arabidopsis thaliana GN=At5g44450 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 317 bits (811), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 152/208 (73%), Positives = 175/208 (84%), Gaps = 6/208 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1 MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58
Query: 129 NVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59 HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
PV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD+D
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDND 175
Query: 248 FVSFFKRAKVGLKPGGFFVLKENIARSG 275
FVSFF RAK LKPGGFFV+KEN+A++G
Sbjct: 176 FVSFFNRAKGYLKPGGFFVVKENLAKNG 203
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 4 |
| >sp|A2XMJ1|NTM1_ORYSI Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. indica GN=OsI_13745 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (720), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 169/235 (71%), Gaps = 30/235 (12%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQE---------------------------- 100
M+ G DS+G+EF +A EMW +IG +
Sbjct: 1 MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEQEAGGGG 60
Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
K+ +WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF AR +HLV
Sbjct: 61 KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L + D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
LQDFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK+GLKP GFFVLKENIAR+G
Sbjct: 179 LQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKIGLKPNGFFVLKENIARNG 233
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q10CT5|NTM1_ORYSJ Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os03g0780900 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 278 bits (711), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 166/235 (70%), Gaps = 30/235 (12%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQ------------------------ 104
M+ G DS+G+EF +A EMW +IG +
Sbjct: 1 MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEEEAGGGG 60
Query: 105 ----WYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF AR +HLV
Sbjct: 61 KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L + D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
LQDFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK+GLKP GFFVLKENIAR+G
Sbjct: 179 LQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKIGLKPNGFFVLKENIARNG 233
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KL94|NT1AA_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-A OS=Xenopus laevis GN=ntmt1-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 115/180 (63%), Gaps = 8/180 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V +VDG+LGG+G+++ VD+ GS+ FLQ L N N
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + N+
Sbjct: 64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGS 276
FC LQ+F+PE RYDVIW+QW IGHLTD+ V+F +R ++GL+P G V+K+N+ + S
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVNFLQRCRLGLRPNGIIVIKDNVTQDAS 175
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|B1H2P7|NTM1A_XENTR N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Xenopus tropicalis GN=ntmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 113/180 (62%), Gaps = 8/180 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ L N N
Sbjct: 4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F +VD+++ FL A+ L E + N+
Sbjct: 64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGS 276
FC LQ+F+PE RYDVIW+QW IGHLTD+ V F KR +GL+P G V+K+N+ + S
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVDFLKRCSLGLRPNGIIVIKDNVTQDVS 175
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q6NWX7|NTM1A_DANRE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Danio rerio GN=ntmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (425), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 109/176 (61%), Gaps = 9/176 (5%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E +T +Y E YW+ V +VDG+LGG+G+++ +DI GS+ FLQ L +
Sbjct: 7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VDL++ FLD AR L E+ + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
LQDF P+ RYDVIW+QW IGHLTDD V F +R + GL+P G V+K+N+A G
Sbjct: 118 GLQDFQPQPERYDVIWIQWVIGHLTDDHLVEFLRRCRSGLRPEGLIVVKDNVAYEG 173
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Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KLE6|NT1AB_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-B OS=Xenopus laevis GN=ntmt1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (423), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 116/180 (64%), Gaps = 9/180 (5%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V A+VDG+LGG+G+++ D+ S+ FLQ L + ++
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + +
Sbjct: 61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGS 276
FC LQ+F+PE RYDVIW+QW IGHLTD+ VSF +R K+GL+P G ++K+N+ + GS
Sbjct: 115 FCCGLQEFSPEPSRYDVIWIQWVIGHLTDEHLVSFLQRCKLGLRPNGIILIKDNVTQDGS 174
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q8R2U4|NTM1A_MOUSE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Mus musculus GN=Ntmt1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 109/179 (60%), Gaps = 9/179 (5%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ + +VDG+LGG+G+++ +D+ S FLQ L + PN
Sbjct: 4 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + N+
Sbjct: 63 S--CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
FC LQDF+PE G YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ G
Sbjct: 115 FCCGLQDFSPEPGSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEG 173
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1 (By similarity). Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q9BV86|NTM1A_HUMAN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Homo sapiens GN=NTMT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 108/179 (60%), Gaps = 9/179 (5%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 4 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E + N+
Sbjct: 63 S--CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
FC LQDFTPE YDVIW+QW IGHLTD F +R K L+P G V+K+N+A+ G
Sbjct: 115 FCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG 173
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q2T9N3|NTM1A_BOVIN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Bos taurus GN=NTMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 109/179 (60%), Gaps = 9/179 (5%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + N
Sbjct: 4 EVIEDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-QNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NF
Sbjct: 63 SY--ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNF 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
FC LQDF+PE YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ G
Sbjct: 115 FCCGLQDFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEG 173
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 280 | ||||||
| 255586233 | 276 | Protein C9orf32, putative [Ricinus commu | 0.725 | 0.735 | 0.797 | 2e-94 | |
| 224115626 | 276 | predicted protein [Populus trichocarpa] | 0.725 | 0.735 | 0.758 | 3e-91 | |
| 356528088 | 336 | PREDICTED: alpha N-terminal protein meth | 0.842 | 0.702 | 0.668 | 9e-91 | |
| 356510746 | 278 | PREDICTED: alpha N-terminal protein meth | 0.725 | 0.730 | 0.741 | 9e-87 | |
| 449433531 | 275 | PREDICTED: alpha N-terminal protein meth | 0.725 | 0.738 | 0.729 | 1e-86 | |
| 297791381 | 335 | hypothetical protein ARALYDRAFT_494541 [ | 0.735 | 0.614 | 0.723 | 5e-86 | |
| 145358849 | 334 | methyltransferase [Arabidopsis thaliana] | 0.732 | 0.613 | 0.725 | 2e-85 | |
| 75321280 | 276 | RecName: Full=Alpha N-terminal protein m | 0.721 | 0.731 | 0.730 | 5e-84 | |
| 358348179 | 348 | Methyltransferase-like protein 11A [Medi | 0.725 | 0.583 | 0.700 | 2e-83 | |
| 242032801 | 304 | hypothetical protein SORBIDRAFT_01g00629 | 0.732 | 0.674 | 0.599 | 1e-75 |
| >gi|255586233|ref|XP_002533771.1| Protein C9orf32, putative [Ricinus communis] gi|223526308|gb|EEF28616.1| Protein C9orf32, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 165/207 (79%), Positives = 182/207 (87%), Gaps = 4/207 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
MEV+G DSDG+EFKNAEEMWREQ G DG KKTQWYR+G+SYW+GVEASVDGVLGG+G
Sbjct: 1 MEVTGTDSDGREFKNAEEMWREQTG-DGT---KKTQWYRDGVSYWQGVEASVDGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
VN+ DIKGSEAFLQ L S+ F + +HLVALDCGSGIGR+TKNLLIRYFNEVDLLEP
Sbjct: 57 QVNDADIKGSEAFLQTLFSELFVDGGLGRHLVALDCGSGIGRVTKNLLIRYFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFLDAAR+SL ENHMA D HKATNFFC PLQ+FTP+ G YDVIWVQWCIGHLTDDDF
Sbjct: 117 VSHFLDAARDSLINENHMASDTHKATNFFCTPLQEFTPDAGHYDVIWVQWCIGHLTDDDF 176
Query: 249 VSFFKRAKVGLKPGGFFVLKENIARSG 275
VSFF RAK+GLKPGGFFVLKEN+AR+G
Sbjct: 177 VSFFMRAKIGLKPGGFFVLKENVARNG 203
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115626|ref|XP_002317082.1| predicted protein [Populus trichocarpa] gi|222860147|gb|EEE97694.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 157/207 (75%), Positives = 181/207 (87%), Gaps = 4/207 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
ME +G DSDG+EFKN +EMW E G+ KKTQWYR+G++YWEGVEASV+GVLGG+G
Sbjct: 1 MEAAGTDSDGREFKNPDEMWLEHTGD----TNKKTQWYRDGVAYWEGVEASVNGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VN+ D+KGSE FLQ LL++ F + ++HLVALDCGSGIGRITKNLLIR+FNEVDLLEP
Sbjct: 57 HVNDADVKGSEGFLQTLLAELFVDGGIDRHLVALDCGSGIGRITKNLLIRFFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFLDAARE+L ENHMA D HKATNF+CVPLQ+FTP+ GRYDVIWVQWCIGHLTDDDF
Sbjct: 117 VSHFLDAARENLVQENHMALDKHKATNFYCVPLQEFTPDAGRYDVIWVQWCIGHLTDDDF 176
Query: 249 VSFFKRAKVGLKPGGFFVLKENIARSG 275
VSFF RAK+GLKPGGFFVLKEN+ARSG
Sbjct: 177 VSFFNRAKIGLKPGGFFVLKENLARSG 203
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528088|ref|XP_003532637.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 339 bits (869), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 161/241 (66%), Positives = 190/241 (78%), Gaps = 5/241 (2%)
Query: 36 PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED 95
P+ LL R L ++ + + P ++++S M+ +GLDSDG+EFK E+MWREQ G+
Sbjct: 27 PSFSLLSTRTRTLGLTASCYSSFSFPSYRKTSCMDAAGLDSDGREFKTPEDMWREQAGD- 85
Query: 96 GEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNA-R 154
KKTQWYR+G+SYWEGV+A++DGVLGGF NVNE DI SE FL +L S+RF A
Sbjct: 86 ---PSKKTQWYRDGVSYWEGVKANMDGVLGGFANVNEPDITCSEDFLNILFSERFHAADA 142
Query: 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214
+Q LV LDCGSGIGR+TKNLLIRYFNEVDLLEPVSHFL+ ARE+LA DMHKA
Sbjct: 143 RHQPLVVLDCGSGIGRVTKNLLIRYFNEVDLLEPVSHFLETARETLALGCQTNSDMHKAV 202
Query: 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274
NF+CVPLQDFTP+T RYDVIW+QWCIGHLTD+DFVSFFKRAKVGLKPGGFFVLKENIARS
Sbjct: 203 NFYCVPLQDFTPDTARYDVIWIQWCIGHLTDEDFVSFFKRAKVGLKPGGFFVLKENIARS 262
Query: 275 G 275
G
Sbjct: 263 G 263
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510746|ref|XP_003524095.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 326 bits (835), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 155/209 (74%), Positives = 174/209 (83%), Gaps = 6/209 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M+ GLDSDG+EF AE+MWREQ G+ KKTQWYR+G+SYWEGV+A++DGVLGGF
Sbjct: 1 MDAGGLDSDGREFNTAEDMWREQAGD----PSKKTQWYRDGVSYWEGVKANMDGVLGGFA 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARN--NQHLVALDCGSGIGRITKNLLIRYFNEVDLL 186
NVNE DI SE FL +LLS+RFP A + Q LVALDCGSGIGR+TKNLLIRYFNEVDLL
Sbjct: 57 NVNEPDISCSEDFLNILLSERFPPAADARRQPLVALDCGSGIGRVTKNLLIRYFNEVDLL 116
Query: 187 EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDD 246
EPVSHFL+ ARE+LA DMHKA NF+CVPLQDFTP+T RYDVIW+QWCIGHLTD+
Sbjct: 117 EPVSHFLETARETLASGCQTNSDMHKAVNFYCVPLQDFTPDTARYDVIWIQWCIGHLTDE 176
Query: 247 DFVSFFKRAKVGLKPGGFFVLKENIARSG 275
DFVSFFK AKVGLK GGFFVLKENIARSG
Sbjct: 177 DFVSFFKSAKVGLKAGGFFVLKENIARSG 205
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433531|ref|XP_004134551.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] gi|449506765|ref|XP_004162842.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 151/207 (72%), Positives = 178/207 (85%), Gaps = 4/207 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
ME SG D+DG EFKNAEEMWRE +G K+T+WYREG+ YW+GVEASVDGVLGG+G
Sbjct: 1 MEGSGADTDGHEFKNAEEMWREHVG----NPTKRTEWYREGVGYWQGVEASVDGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VN+ DI GSE FL+ +L +RF A ++ LVALDCGSGIGR+TKNLLI+YFNEVDLLEP
Sbjct: 57 HVNDADILGSEVFLKSILVERFSFAGKDRPLVALDCGSGIGRVTKNLLIKYFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFL+AAR +LAPEN+ D+HKATNFFC+PLQ+FTP+ GRYDVIWVQWCIGHLTD+DF
Sbjct: 117 VSHFLEAARGNLAPENNGPSDLHKATNFFCMPLQEFTPDAGRYDVIWVQWCIGHLTDEDF 176
Query: 249 VSFFKRAKVGLKPGGFFVLKENIARSG 275
+SFFKRAK+GLK GG F+LKENIARSG
Sbjct: 177 ISFFKRAKLGLKAGGIFILKENIARSG 203
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791381|ref|XP_002863575.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] gi|297309410|gb|EFH39834.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 323 bits (828), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 152/210 (72%), Positives = 177/210 (84%), Gaps = 4/210 (1%)
Query: 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
S +ME+ G+DS+GKEF + +EMWRE+IGE+G++ +KTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 57 SESMEICGVDSEGKEFNSVQEMWREEIGEEGDET-RKTQWYRDGVSYWEGVEASVDGVLG 115
Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDL 185
G+G+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDL
Sbjct: 116 GYGHVNDADIIGSEVFLKTLLQERLVNVGPNQHLVALDCGSGIGRITKNLLIRYFNEVDL 175
Query: 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD 245
LEPV+ FLDAARE+LA HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD
Sbjct: 176 LEPVAQFLDAARENLAS---AGSKTHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTD 232
Query: 246 DDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
+DFVSFF AK LKPGGFFV+KEN+A+ G
Sbjct: 233 NDFVSFFNCAKGCLKPGGFFVVKENLAKKG 262
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145358849|ref|NP_199258.3| methyltransferase [Arabidopsis thaliana] gi|332007727|gb|AED95110.1| methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 153/211 (72%), Positives = 178/211 (84%), Gaps = 6/211 (2%)
Query: 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
S++M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 56 SNSMDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLG 113
Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVD 184
G+G+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVD
Sbjct: 114 GYGHVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVD 173
Query: 185 LLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT 244
LLEPV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLT
Sbjct: 174 LLEPVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLT 230
Query: 245 DDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
D+DFVSFF RAK LKPGGFFV+KEN+A++G
Sbjct: 231 DNDFVSFFNRAKGYLKPGGFFVVKENLAKNG 261
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75321280|sp|Q5PP70.1|NTM1_ARATH RecName: Full=Alpha N-terminal protein methyltransferase 1; AltName: Full=X-Pro-Lys N-terminal protein methyltransferase 1; Short=NTM1 gi|56121880|gb|AAV74221.1| At5g44450 [Arabidopsis thaliana] gi|57222192|gb|AAW39003.1| At5g44450 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 317 bits (811), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 152/208 (73%), Positives = 175/208 (84%), Gaps = 6/208 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1 MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58
Query: 129 NVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59 HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
PV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD+D
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDND 175
Query: 248 FVSFFKRAKVGLKPGGFFVLKENIARSG 275
FVSFF RAK LKPGGFFV+KEN+A++G
Sbjct: 176 FVSFFNRAKGYLKPGGFFVVKENLAKNG 203
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348179|ref|XP_003638126.1| Methyltransferase-like protein 11A [Medicago truncatula] gi|355504061|gb|AES85264.1| Methyltransferase-like protein 11A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/207 (70%), Positives = 172/207 (83%), Gaps = 4/207 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M+ G DS+G+E+K A+EMW+EQ G+ KKT WYR+G+SYWEGV A+VDGVLGG+
Sbjct: 1 MDAGGSDSNGREYKTADEMWKEQTGD----PNKKTLWYRQGVSYWEGVNATVDGVLGGYA 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VNE DI S+ FL+++LS+RF Q LVALDCGSGIGR+TKNLLIR+FNEVDLLEP
Sbjct: 57 DVNEPDITCSDDFLKIILSERFNADAKTQPLVALDCGSGIGRVTKNLLIRHFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFL+AARE+L + DMHKA NF+CVPLQDFTP+ GRYDVIW+QWCIGHLTDDDF
Sbjct: 117 VSHFLEAARETLTSGEYTNSDMHKAVNFYCVPLQDFTPDVGRYDVIWIQWCIGHLTDDDF 176
Query: 249 VSFFKRAKVGLKPGGFFVLKENIARSG 275
++FFKRAKVGLKPGG FVLKENIARSG
Sbjct: 177 ITFFKRAKVGLKPGGLFVLKENIARSG 203
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242032801|ref|XP_002463795.1| hypothetical protein SORBIDRAFT_01g006290 [Sorghum bicolor] gi|241917649|gb|EER90793.1| hypothetical protein SORBIDRAFT_01g006290 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 139/232 (59%), Positives = 169/232 (72%), Gaps = 27/232 (11%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIG-------------------------EDGEQQEKKT 103
M+ G DS G+ F +A EMW E++G E+G K+
Sbjct: 1 MDSRGFDSAGRVFSSATEMWAEELGSSATASTTAEAASPATATEGSGGASEEGAGDGKRK 60
Query: 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALD 163
+WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL+DRF A+ +HLVALD
Sbjct: 61 EWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLADRFGTAK--RHLVALD 118
Query: 164 CGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223
CGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AARESL D HKA NF+CVPLQD
Sbjct: 119 CGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAARESLTGYMDQGEDSHKAANFYCVPLQD 178
Query: 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
FTPE G+YDVIW+QWCIG L DDDF+SFF RAKVGLKP GFFVLKENIAR+G
Sbjct: 179 FTPEEGKYDVIWIQWCIGQLPDDDFISFFNRAKVGLKPDGFFVLKENIARNG 230
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 280 | ||||||
| UNIPROTKB|B1H2P7 | 224 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.614 | 0.767 | 0.444 | 6.8e-40 | |
| UNIPROTKB|Q4KL94 | 224 | ntmt1-a "N-terminal Xaa-Pro-Ly | 0.614 | 0.767 | 0.444 | 6.8e-40 | |
| UNIPROTKB|Q4KLE6 | 223 | ntmt1-b "N-terminal Xaa-Pro-Ly | 0.610 | 0.766 | 0.433 | 3.7e-39 | |
| ZFIN|ZDB-GENE-040426-2055 | 223 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.596 | 0.748 | 0.465 | 3.7e-39 | |
| UNIPROTKB|F1MKD1 | 223 | METTL11A "Uncharacterized prot | 0.596 | 0.748 | 0.454 | 7e-38 | |
| DICTYBASE|DDB_G0269658 | 270 | DDB_G0269658 "Methyltransferas | 0.682 | 0.707 | 0.406 | 8.9e-38 | |
| MGI|MGI:1913867 | 223 | Ntmt1 "N-terminal Xaa-Pro-Lys | 0.596 | 0.748 | 0.437 | 2.4e-37 | |
| UNIPROTKB|D2H163 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.596 | 0.748 | 0.448 | 3e-37 | |
| UNIPROTKB|Q9BV86 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.596 | 0.748 | 0.443 | 3.9e-37 | |
| UNIPROTKB|Q2T9N3 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.596 | 0.748 | 0.448 | 4.9e-37 |
| UNIPROTKB|B1H2P7 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 80/180 (44%), Positives = 113/180 (62%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ L N N
Sbjct: 4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F +VD+++ FL A+ L E + N+
Sbjct: 64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGS 276
FC LQ+F+PE RYDVIW+QW IGHLTD+ V F KR +GL+P G V+K+N+ + S
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVDFLKRCSLGLRPNGIIVIKDNVTQDVS 175
|
|
| UNIPROTKB|Q4KL94 ntmt1-a "N-terminal Xaa-Pro-Lys N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 80/180 (44%), Positives = 115/180 (63%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V +VDG+LGG+G+++ VD+ GS+ FLQ L N N
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + N+
Sbjct: 64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGS 276
FC LQ+F+PE RYDVIW+QW IGHLTD+ V+F +R ++GL+P G V+K+N+ + S
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVNFLQRCRLGLRPNGIIVIKDNVTQDAS 175
|
|
| UNIPROTKB|Q4KLE6 ntmt1-b "N-terminal Xaa-Pro-Lys N-methyltransferase 1-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 78/180 (43%), Positives = 116/180 (64%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V A+VDG+LGG+G+++ D+ S+ FLQ L + ++
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + +
Sbjct: 61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGS 276
FC LQ+F+PE RYDVIW+QW IGHLTD+ VSF +R K+GL+P G ++K+N+ + GS
Sbjct: 115 FCCGLQEFSPEPSRYDVIWIQWVIGHLTDEHLVSFLQRCKLGLRPNGIILIKDNVTQDGS 174
|
|
| ZFIN|ZDB-GENE-040426-2055 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 82/176 (46%), Positives = 109/176 (61%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E +T +Y E YW+ V +VDG+LGG+G+++ +DI GS+ FLQ L +
Sbjct: 7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VDL++ FLD AR L E+ + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
LQDF P+ RYDVIW+QW IGHLTDD V F +R + GL+P G V+K+N+A G
Sbjct: 118 GLQDFQPQPERYDVIWIQWVIGHLTDDHLVEFLRRCRSGLRPEGLIVVKDNVAYEG 173
|
|
| UNIPROTKB|F1MKD1 METTL11A "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 80/176 (45%), Positives = 109/176 (61%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + PN +
Sbjct: 7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTSY- 64
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NFFC
Sbjct: 65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
LQDF+PE YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ G
Sbjct: 118 GLQDFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEG 173
|
|
| DICTYBASE|DDB_G0269658 DDB_G0269658 "Methyltransferase-like protein 11A" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 83/204 (40%), Positives = 123/204 (60%)
Query: 72 SGLDSDGKEFKNAEEMWREQI-GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNV 130
SGLD +G + N E++W++++ G+D + ++K WY+ YW+GVEA+VDG+LGG V
Sbjct: 24 SGLDGEGNTYINIEDLWKKELEGKDNKMEDK---WYKSADEYWKGVEATVDGMLGGLAQV 80
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPV 189
+ +D+ S+ F+Q + N +L ALDCG+GIGR+ K L+ F VDL+E
Sbjct: 81 SPIDVVASKVFIQDFIKGTDSRPPINLNL-ALDCGAGIGRVAKEFLLPIGFKNVDLVEQN 139
Query: 190 SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFV 249
FLD A+ +N D ++ N++ V LQDFT E +YD IW+QW IGHL D DF+
Sbjct: 140 KLFLDKAKS----DNFK--DDNRVENYYAVGLQDFTFEK-KYDCIWIQWVIGHLHDLDFI 192
Query: 250 SFFKRAKVGLKPGGFFVLKENIAR 273
F K+ L P G +K+N A+
Sbjct: 193 EFLKKCMDSLTPNGIICIKDNCAK 216
|
|
| MGI|MGI:1913867 Ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 77/176 (43%), Positives = 108/176 (61%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +D+ S FLQ L + PN
Sbjct: 7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
LQDF+PE G YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ G
Sbjct: 118 GLQDFSPEPGSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEG 173
|
|
| UNIPROTKB|D2H163 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Ailuropoda melanoleuca (taxid:9646)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 79/176 (44%), Positives = 107/176 (60%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 7 EDEKQFYLKAKTYWKEVPPTVDGMLGGYGHISSIDISSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL AR L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLIKARTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
LQDF+PE YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ G
Sbjct: 118 GLQDFSPEPNSYDVIWIQWVIGHLTDQHLAEFLRRCKQGLRPNGIIVIKDNMAQEG 173
|
|
| UNIPROTKB|Q9BV86 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 78/176 (44%), Positives = 107/176 (60%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
LQDFTPE YDVIW+QW IGHLTD F +R K L+P G V+K+N+A+ G
Sbjct: 118 GLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG 173
|
|
| UNIPROTKB|Q2T9N3 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 79/176 (44%), Positives = 108/176 (61%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + N +
Sbjct: 7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-QNKTGTSY- 64
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NFFC
Sbjct: 65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
LQDF+PE YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ G
Sbjct: 118 GLQDFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEG 173
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.1.1.8 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 280 | |||
| pfam05891 | 217 | pfam05891, Methyltransf_PK, AdoMet dependent proli | 2e-95 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 2e-07 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 3e-07 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 5e-06 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 7e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-05 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 3e-04 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 3e-04 |
| >gnl|CDD|218798 pfam05891, Methyltransf_PK, AdoMet dependent proline di-methyltransferase | Back alignment and domain information |
|---|
Score = 279 bits (716), Expect = 2e-95
Identities = 102/177 (57%), Positives = 132/177 (74%), Gaps = 8/177 (4%)
Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
+ Q+Y + I+YWEGV A+VDG+LGG+G+V+++D+ GS FL+ LL +R P +HLV
Sbjct: 1 DEEQFYSKAIAYWEGVSATVDGMLGGYGHVSDIDVNGSRNFLRRLLRERLPGK--RRHLV 58
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCG+GIGR+TKNLL+ F++VDL+EPV FL A+E LA K NFFCV
Sbjct: 59 ALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEGKK------KVGNFFCVG 112
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGSE 277
LQDFTPE GRYD+IW+QWCIGHLTD+D V+F KR K GLKP GF V+KEN+A++G
Sbjct: 113 LQDFTPEEGRYDLIWIQWCIGHLTDEDLVAFLKRCKGGLKPNGFIVVKENVAQNGFV 169
|
This protein is expressed in the tail neuron PVT and in uterine cells in C. elegans [worm-base]. In Saccharomyces cerevisiae this is AdoMet dependent proline di-methyltransferase. This enzyme catalyzes the di-methylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues. The methyltransferases described here specifically recognise the N-terminal X-Pro-Lys sequence motif, and they may account for nearly all previously described eukaryotic protein N-terminal methylation reactions. A number of other yeast and human proteins also share the recognition motif and may be similarly modified. As with other methyltransferases, this family carries the characteristic GxGxG motif. Length = 217 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 27/126 (21%), Positives = 41/126 (32%), Gaps = 19/126 (15%)
Query: 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205
L LD G G G +T+ L++ F + + + D + LA
Sbjct: 23 LLALLKEKGIFIPASVLDIGCGTGYLTR-ALLKRFPQAEFI-----ANDISAGMLA---Q 73
Query: 206 MAPDMHKATNFFCVPLQDFTPETGRYDVIW----VQWCIGHLTDDDFVSFFKRAKVGLKP 261
+ + F C + E +D+I +QWC DD LKP
Sbjct: 74 AKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC------DDLSQALSELARVLKP 127
Query: 262 GGFFVL 267
GG
Sbjct: 128 GGLLAF 133
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-07
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G + + L R V ++ L AR+ + + +P
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAED-------LPF 53
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
D +DV+ + HL D + LKPGG V+
Sbjct: 54 PD-----ESFDVVVSSLVLHHL--PDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-06
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G + L V ++ L+ AR++ A
Sbjct: 3 LDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDA 56
Query: 222 QDFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268
++ PE +DVI + HL +D F + A+ LKPGG VL
Sbjct: 57 EELPPEADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-06
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G G + + LL E ++ L+AA E LA + +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRL-----DV 55
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265
L + G +DV+ + HL D + + + LKPGG
Sbjct: 56 LDAIDLDPGSFDVVVASNVLHHL--ADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
LD G G GR+ L R V ++ L+ A+E L + F
Sbjct: 1 ILDLGCGTGRVL-RALARAGPSSVTGVDISKEALELAKERLRDKGP-------KVRFVVA 52
Query: 220 PLQDFTPETGRYDVIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGG 263
+D E G +D++ + +L+ + + A L+PGG
Sbjct: 53 DARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 12/107 (11%)
Query: 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G G + L + V ++ L+ ARE+ P + F
Sbjct: 6 LDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLAL--GPRIT----FVQGD 59
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
D +D +++ G L + LKPGG VL
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLLE-----LLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--V 219
L+ G+GIGR T L + +V L+ + ES+ +N +K F C V
Sbjct: 42 LELGAGIGRFTGEL-AKKAGQVIALDFI--------ESVIKKNESINGHYKNVKFMCADV 92
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
D G D+I+ W + +L+D + + +R LK GG+ +E
Sbjct: 93 TSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142
|
Length = 475 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 280 | |||
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.96 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.88 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.86 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.83 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.82 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.81 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.81 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.8 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.79 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.79 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.79 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.78 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.77 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.77 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.76 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.76 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.76 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.76 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.74 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.74 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.73 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.73 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.72 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.72 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.71 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.7 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.7 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.69 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.69 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.69 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.69 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.68 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.68 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.68 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.67 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.67 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.66 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.66 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.66 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.66 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.65 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.65 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.64 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.64 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.64 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.64 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.64 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.63 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.63 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.63 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.62 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.62 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.61 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.61 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.61 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.61 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.61 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.6 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.59 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.57 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.57 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.57 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.57 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.55 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.55 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.55 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.54 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.54 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.52 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.51 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.51 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.51 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.51 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.5 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.49 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.49 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.49 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.49 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.49 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.48 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.48 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.46 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.46 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.45 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.45 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.44 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.44 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.41 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.41 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.41 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.39 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.39 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.39 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.38 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.37 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.36 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.36 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.35 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.35 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.35 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.35 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.34 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.34 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.34 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.33 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.33 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.33 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.33 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.32 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.31 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.31 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.31 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.31 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.28 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.26 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.25 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.25 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.24 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.24 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.24 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.24 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.23 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.23 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.23 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.21 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.2 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.19 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.18 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.18 | |
| PLN02366 | 308 | spermidine synthase | 99.17 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.17 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.16 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.16 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.15 | |
| PLN02476 | 278 | O-methyltransferase | 99.15 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.15 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.15 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.14 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.14 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.13 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.13 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.13 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.1 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.07 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.06 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.06 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.04 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.04 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.04 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.04 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.03 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.02 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.0 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.0 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.99 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.98 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.96 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.93 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.91 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.9 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.89 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.87 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.86 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.86 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.84 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.83 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.81 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.81 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.8 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.79 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.78 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.77 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.77 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.77 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.76 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.74 | |
| PLN02823 | 336 | spermine synthase | 98.74 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.74 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.7 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.66 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.65 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.64 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.63 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.62 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.61 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.6 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.59 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.57 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.57 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.55 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.53 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.53 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.53 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.52 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.49 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.48 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.48 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.47 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.45 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.44 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.39 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.39 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.37 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.35 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.35 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.32 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.27 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.19 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.19 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.15 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.14 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.12 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.1 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.08 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.08 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.08 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.07 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.07 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.04 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.03 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.03 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.97 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.93 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.92 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.92 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.91 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.91 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.89 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.87 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.87 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.87 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.85 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.85 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.76 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.75 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.7 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.7 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.66 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.65 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.56 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.53 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.5 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.5 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.49 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.43 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.35 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.34 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.34 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.31 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.21 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.15 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.11 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.04 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 96.98 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.95 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.95 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.94 | |
| PHA01634 | 156 | hypothetical protein | 96.93 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.87 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.84 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.7 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.6 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.56 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.46 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.45 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 96.28 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.21 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.04 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.03 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.01 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 95.92 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 95.89 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.84 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.75 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.72 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.72 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.59 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.53 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.49 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 95.42 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.4 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 95.01 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 94.95 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 94.64 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 94.55 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 94.47 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.44 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 94.36 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 94.32 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 94.25 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.06 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 94.06 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 93.97 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 93.89 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 93.81 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 93.8 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 93.72 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 93.62 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 93.26 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 93.26 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 93.08 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 93.07 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 93.05 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.81 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 92.74 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 92.46 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 92.39 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 92.34 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 92.3 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 92.11 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 91.9 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 91.43 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.02 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 90.97 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 90.96 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 90.94 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 90.6 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 89.9 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 89.74 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 89.67 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 89.64 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 89.61 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 88.28 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 87.83 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 87.24 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 86.48 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 86.45 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 85.94 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 85.9 | |
| PRK13699 | 227 | putative methylase; Provisional | 85.8 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 85.55 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 85.45 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 85.29 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 84.55 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 84.55 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 84.23 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 84.17 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 84.17 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 83.28 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 83.26 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 82.7 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.45 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 82.43 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 82.34 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 81.81 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 81.64 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 80.96 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 80.57 |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-30 Score=212.26 Aligned_cols=167 Identities=54% Similarity=1.050 Sum_probs=134.0
Q ss_pred hhHHHHHHHhhhhcccccccccccCccccccccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC
Q 023562 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (280)
Q Consensus 102 ~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~ 181 (280)
++.||+.+.+||+.++.+.++|++||++++..|+..+..||..+.....+ ......+.||+|||.|+++..++.+.++
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 46899999999999999999999999999999999999999987765321 1234579999999999999999988899
Q ss_pred cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCC
Q 023562 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (280)
Q Consensus 182 ~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~Lkp 261 (280)
.|+.||+++..++.|++.+... .....++++..+++|.+++++||+||++|++.|++|+|+..||++|...|+|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~------~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~ 153 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKD------NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP 153 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCG------GCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred EeEEeccCHHHHHHHHHHhccc------CCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999887652 1355889999999998877899999999999999999999999999999999
Q ss_pred CcEEEEEeccCCCCC
Q 023562 262 GGFFVLKENIARSGS 276 (280)
Q Consensus 262 GG~lii~e~~~~~~~ 276 (280)
+|+|++.||++..++
T Consensus 154 ~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 154 NGVIVVKENVSSSGF 168 (218)
T ss_dssp EEEEEEEEEEESSSE
T ss_pred CcEEEEEecCCCCCC
Confidence 999999999998764
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-22 Score=170.42 Aligned_cols=111 Identities=22% Similarity=0.245 Sum_probs=100.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||||.++..+++.... +|+++|+|+.||+.|+++....+. .+++|+.+|++++|+++++||+
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~------~~i~fv~~dAe~LPf~D~sFD~ 122 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV------QNVEFVVGDAENLPFPDNSFDA 122 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc------cceEEEEechhhCCCCCCccCE
Confidence 347899999999999999999887534 899999999999999999987543 3399999999999999999999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
|.+++.|++++ +.+.+|++++|+|||||.+++.|.-..
T Consensus 123 vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 123 VTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred EEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 99999999999 777999999999999999999987664
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-21 Score=169.27 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=86.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||||.++..++++.. ..|+++|+|+.|++.|+++....+. .+++++++|++++++++++||
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~~da~~lp~~d~sfD 118 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQGDAEDLPFPDNSFD 118 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-BTTB--S-TT-EE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEEcCHHHhcCCCCcee
Confidence 45678999999999999998887643 2799999999999999999876432 489999999999999889999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
+|++.+.+++++ +...+++++.|+|||||.++|.|.....
T Consensus 119 ~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 119 AVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp EEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred EEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 999999999998 6779999999999999999999876543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-20 Score=164.61 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=91.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||||||+|.++..+++.+. +|+|+|+|++|++.|+++....+. ..+++++++++++++..+++||+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae~l~~~~~~FD~Vi 203 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAEKLADEGRKFDAVL 203 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHHHhhhccCCCCEEE
Confidence 3567999999999999998887655 699999999999999987654321 2478999999998876668999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+..+++|++ +...+++++.++|||||.+++++.
T Consensus 204 ~~~vLeHv~--d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 204 SLEVIEHVA--NPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EhhHHHhcC--CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 999999999 556999999999999999999854
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=158.69 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=95.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..++++. . .+|+++|+|+.|++.|+++..... .....+++++++|++++++++++||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~---~~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA---KSCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh---hccCCCeEEEEcccccCCCCCCCEe
Confidence 4466799999999999999888763 2 279999999999999987753210 0012468999999999998888999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
+|+++++++|++ +...+++++.|+|||||.+++.|.....
T Consensus 148 ~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 148 AITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999999999998 6779999999999999999999887543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=131.98 Aligned_cols=95 Identities=27% Similarity=0.378 Sum_probs=82.9
Q ss_pred EEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhh
Q 023562 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241 (280)
Q Consensus 162 LDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~ 241 (280)
||+|||+|..+..++++...+|+++|+|+.|++.++++... .++.+..+|++++++++++||+|++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCcccccccccccccccee
Confidence 89999999999999988455799999999999999999875 345599999999998889999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 242 HLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 242 ~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
|++ +...+++++.|+|||||+++|
T Consensus 72 ~~~--~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLE--DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSS--HHHHHHHHHHHHEEEEEEEEE
T ss_pred ecc--CHHHHHHHHHHHcCcCeEEeC
Confidence 995 888999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-19 Score=160.58 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=97.1
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+++++..+|+++|+|+.|++.++++....++ ..+++|.++|+.++++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCcccCCCCCCCccEEE
Confidence 46679999999999999999887545799999999999999998766543 4579999999999888788999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+..+++|++ +...+++++.++|||||.|++.+++.
T Consensus 192 s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 192 SMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred ECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 999999998 66799999999999999999988764
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-19 Score=149.45 Aligned_cols=138 Identities=17% Similarity=0.241 Sum_probs=114.2
Q ss_pred cccccccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcC-------CcEEEEeCCHHHHHHHHHHc
Q 023562 128 GNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESL 200 (280)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~-------~~v~~vD~S~~~l~~A~~~~ 200 (280)
+-+++.........+.+++...+. +.++.++||++||||.++..++++.. .+|+++|+|+.||+.++++.
T Consensus 74 D~mND~mSlGiHRlWKd~~v~~L~---p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa 150 (296)
T KOG1540|consen 74 DIMNDAMSLGIHRLWKDMFVSKLG---PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRA 150 (296)
T ss_pred HHHHHHhhcchhHHHHHHhhhccC---CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHH
Confidence 334545455556666777777776 67789999999999999999987632 37999999999999999998
Q ss_pred CcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 201 APENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 201 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
...++ .....+.|+++|++++|+++.+||...+.+.+.+++ ++++.+++++|+|||||.|.+.|.-..
T Consensus 151 ~~~~l---~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 151 KKRPL---KASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred hhcCC---CcCCceEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 66444 112348999999999999999999999999999999 777999999999999999999876543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.5e-19 Score=133.84 Aligned_cols=108 Identities=24% Similarity=0.225 Sum_probs=87.4
Q ss_pred CCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC-CCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~fDlV 234 (280)
++.+|||+|||+|.++..+++. ...+|+++|+|+.|++.|++++...+. ..++++++.|+ ...... ++||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~-~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDAEFDPDFL-EPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCCHGGTTTS-SCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECccccCcccC-CCCCEE
Confidence 3578999999999999999983 333799999999999999999843322 57899999999 333333 679999
Q ss_pred Eccc-hhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~-~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++.+ +++++.+ ++...+++++.+.|+|||++++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 9998 5554443 5778999999999999999999763
|
... |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=151.61 Aligned_cols=111 Identities=22% Similarity=0.283 Sum_probs=96.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|..+..++.....+|+++|+|+.|++.|+++... ..++.+.++|+.+.++++++||+|
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~~~~~~~~~FD~V 121 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDILKKDFPENTFDMI 121 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCcccCCCCCCCeEEE
Confidence 457789999999999999988766444799999999999999998754 246899999998877777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
++..+++|++..+...+++++.++|||||.|++++.+..
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 999999999877888999999999999999999988653
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=146.37 Aligned_cols=107 Identities=22% Similarity=0.286 Sum_probs=92.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|..+..+++++. +|+++|+|+.|++.++++....++ .++++.+.|+.+++++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~~~~-~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLNNLTFD-GEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChhhCCcC-CCcCEEEE
Confidence 457999999999999999998866 599999999999999998776433 3578888998887664 68999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+.+++|+++++...+++++.++|+|||++++.+.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 99999998888999999999999999997765544
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-19 Score=150.84 Aligned_cols=105 Identities=21% Similarity=0.299 Sum_probs=93.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||-|.++..+++.|. +|+|+|+|+++|+.|+.+....+ .++++.+..++++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~g-------v~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESG-------VNIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcc-------ccccchhhhHHHHHhcCCCccEEEE
Confidence 578999999999999999999986 59999999999999999988763 4578888888887655589999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..+++|++ +...+++.|.+++||||.++++...
T Consensus 131 mEVlEHv~--dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 131 MEVLEHVP--DPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred hhHHHccC--CHHHHHHHHHHHcCCCcEEEEeccc
Confidence 99999999 5558999999999999999998654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-18 Score=148.67 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=91.7
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
+.+|||+|||+|.++..|++.+. .|+|+|+++.|++.|++..............+++|.+.++++.. +.||.|+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 47899999999999999998876 59999999999999999966554433333446778888888765 569999999
Q ss_pred chhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.+++|+. |++.+++.+.+.|||||.++++.-.
T Consensus 166 evleHV~--dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 166 EVLEHVK--DPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHHh--CHHHHHHHHHHHhCCCCceEeeehh
Confidence 9999998 7789999999999999999998543
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-18 Score=150.18 Aligned_cols=127 Identities=21% Similarity=0.271 Sum_probs=96.6
Q ss_pred ccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcce
Q 023562 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (280)
Q Consensus 135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i 214 (280)
+........+.+.+.+. .+++.+|||||||+|.++..+++++..+|+++.+|+++.+.+++++...|+ ...+
T Consensus 43 Le~AQ~~k~~~~~~~~~---l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v 114 (273)
T PF02353_consen 43 LEEAQERKLDLLCEKLG---LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----EDRV 114 (273)
T ss_dssp HHHHHHHHHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----SSTE
T ss_pred HHHHHHHHHHHHHHHhC---CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----CCce
Confidence 33333333333434444 778999999999999999999999555799999999999999999998766 5678
Q ss_pred eEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 215 ~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++...|..+++ .+||.|++..+++|+...++..+++++.++|||||.+++...+.
T Consensus 115 ~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 115 EVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp EEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred EEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 99999988765 49999999999999998899999999999999999999875553
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.7e-18 Score=146.21 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=100.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||||||+|.+++++++++..+|+|+++|+++.+.+++++...|+ ..++++...|..++. ++||-|
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----~~~v~v~l~d~rd~~---e~fDrI 141 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----EDNVEVRLQDYRDFE---EPFDRI 141 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----CcccEEEeccccccc---ccccee
Confidence 789999999999999999999998755799999999999999999988776 568999999988876 569999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
+|..+++|+....+..+|+++.++|+|||.+++..-....
T Consensus 142 vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 142 VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9999999999888999999999999999999987665543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-18 Score=146.92 Aligned_cols=111 Identities=14% Similarity=0.249 Sum_probs=94.8
Q ss_pred CCccEEEeecCccHHHHHHHHh--cC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR--YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~--~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
++.+|||+|||+|..+..+++. .. .+++++|+|+.|++.|++++...+. ..+++++++|+.+++.+ .+|+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~D~ 128 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIAIE--NASM 128 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhhCCCC--CCCE
Confidence 5679999999999999888763 22 2799999999999999999876433 34789999999887654 5899
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
|+++.+++|+++++...++++++++|||||.|+++|.+...
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~ 169 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE 169 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 99999999999878889999999999999999999987543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-18 Score=141.87 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=90.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|..+..+++++. +|+++|+|+.|++.++++....++ ++.+...|+..++++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-------PLRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccchhcccc-CCCCEEEE
Confidence 457999999999999999998876 599999999999999988765432 366777787666554 68999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+.+++|+++++...+++++.++|+|||++++.+...
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~ 136 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMD 136 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 999999987788999999999999999977765543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-18 Score=136.45 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=91.4
Q ss_pred CCccEEEeecCccHHHHHHHHh-cC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~-~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD 232 (280)
++.+|||+|||+|.++..++.+ +. .+++|+|+|+.|++.|+++++..++ .+++|.++|+.+++ .+ ++||
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhccccccC-CCee
Confidence 4679999999999999999854 32 3799999999999999998776544 37999999999976 44 7999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|++..+++|++ +...+++++.+.|++||.+++.+..
T Consensus 76 ~I~~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999999999 6679999999999999999998765
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=143.86 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=94.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++.. . .+|+++|+|+.|++.++++....++ .+++++++|+.+++.++++||
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD 116 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAMELPFDDNSFD 116 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhcCCCCCCCcc
Confidence 4567899999999999999888764 2 2799999999999999998765332 468999999988876668999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+|++.++++|++ +...+++++.++|+|||++++.|...
T Consensus 117 ~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 117 YVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 999999999988 66799999999999999999988654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-18 Score=128.52 Aligned_cols=96 Identities=24% Similarity=0.480 Sum_probs=82.0
Q ss_pred EEEeecCccHHHHHHHHhc---C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 161 ALDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 161 VLDlGcG~G~~s~~l~~~~---~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
|||+|||+|..+..++... . .+++++|+|+.|++.++++.... ..+++++++|+.+++...++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-------~~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-------GPKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-------TTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-------CCceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999998774 2 48999999999999999998653 24789999999998866689999999
Q ss_pred c-chhhcCChhhHHHHHHHHHHcCCCCc
Q 023562 237 Q-WCIGHLTDDDFVSFFKRAKVGLKPGG 263 (280)
Q Consensus 237 ~-~~l~~~~~~d~~~~l~~~~r~LkpGG 263 (280)
. .+++|++++++..+++++.++|||||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 6 55999999999999999999999998
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=136.64 Aligned_cols=109 Identities=22% Similarity=0.225 Sum_probs=90.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.++||+|||.|+.+.+|+++|++ |+++|.|+..++.+++.+...+ ..++..+.|+.++.++ +.||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~-------l~i~~~~~Dl~~~~~~-~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEG-------LDIRTRVADLNDFDFP-EEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGCCBS-T-TTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcC-------ceeEEEEecchhcccc-CCcCEEE
Confidence 35679999999999999999999996 9999999999999988776653 4588999999998876 7899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
+..+++|+..+.++.+++.+.+.++|||++++...+..
T Consensus 100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~ 137 (192)
T PF03848_consen 100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET 137 (192)
T ss_dssp EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--
T ss_pred EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc
Confidence 99999999999999999999999999999998655543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=141.59 Aligned_cols=110 Identities=15% Similarity=0.268 Sum_probs=94.3
Q ss_pred CCccEEEeecCccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~---~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
++.+|||+|||+|..+..++++. ..+++++|+|+.|++.|++++...+. ..+++++++|+.+++++ ++|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~d~ 125 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHVEIK--NASM 125 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhCCCC--CCCE
Confidence 55789999999999999888763 12799999999999999998765322 34689999999988754 5899
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
|+++++++|+++++...+++++.++|+|||.|+++|++..
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 9999999999988888999999999999999999998753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=144.22 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=90.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++....++ ..+++++++|+.++. ..+++||+|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 457999999999999999998865 699999999999999999876543 357899999988764 3457999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+..+++|++ +...+++++.++|||||++++..
T Consensus 118 ~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEE
Confidence 999999998 55699999999999999998763
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=139.98 Aligned_cols=101 Identities=18% Similarity=0.339 Sum_probs=88.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+...+. +|+++|+|+.|++.++++... ..+.++|++++++.+++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDAA-----------DHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcccCcCCCCcEEEEEE
Confidence 457899999999999998887654 699999999999999987532 46789999988877789999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+.++++++ ++..+++++.++|+|||.++++...
T Consensus 110 ~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 110 NLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999988 6779999999999999999998654
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-17 Score=143.93 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=91.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|..+..+++++. +|+++|+|+.|++.++++....+ .++++...|+..... +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~-------l~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKEN-------LNIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEechhcccc-cCCccEEEE
Confidence 345999999999999999998876 59999999999999998876642 357888888877655 479999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+.+++|++++++..+++++.++|+|||++++.+..
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~ 225 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAM 225 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99999998888999999999999999998776544
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-17 Score=141.56 Aligned_cols=99 Identities=20% Similarity=0.337 Sum_probs=85.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..+++..+. +|+|+|+|+.|++.|+++ ++++.++|++++.. +++||+
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~~-~~~fD~ 92 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVRDWKP-KPDTDV 92 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChhhCCC-CCCceE
Confidence 346689999999999999999887533 799999999999999763 36788999988753 479999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+++.++||++ +...+++++.++|||||.+++..
T Consensus 93 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 93 VVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEc
Confidence 99999999998 66799999999999999999863
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=142.90 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=89.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..++..+...|+|+|+|+.|+..++......+. ..++.+..+++++++. +++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~lp~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQLPA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHHCCC-cCCcCEEE
Confidence 35679999999999999999988877899999999999865543221100 2468999999999887 58999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|..+++|.. +...+++++++.|+|||.+++...+
T Consensus 195 s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 195 SMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred ECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 999999988 6679999999999999999987544
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-16 Score=131.40 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=87.5
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|..+..+.+.. ..+++|+|+|+.|++.|+++.. ++.+.++|+.+ +.++++||+|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------~~~~~~~d~~~-~~~~~sfD~V 109 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------NINIIQGSLFD-PFKDNFFDLV 109 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------CCcEEEeeccC-CCCCCCEEEE
Confidence 356789999999999999998763 3479999999999999998753 35678888877 5566899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+++.+++|++++++..+++++.+++ ++++++.|...
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 9999999999888999999999998 67888888754
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=148.82 Aligned_cols=110 Identities=21% Similarity=0.203 Sum_probs=94.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|..+..+++....+|+|+|+|+.|++.|+++.... ..+++|.++|+...++++++||+|
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcccCCCCCCCEEEE
Confidence 3456799999999999999888765447999999999999999876532 346899999998887666799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
++..+++|++ +...++++++++|||||.+++.+.+..
T Consensus 337 ~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 337 YSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred EECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 9999999998 667999999999999999999987654
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-16 Score=139.98 Aligned_cols=215 Identities=15% Similarity=0.154 Sum_probs=141.6
Q ss_pred CCcceeeeehhhHHHHHHHHhhhccCCCCCCCcccccccccCCCcccccHHHHHHHhhcCCcccchhh--h------HHH
Q 023562 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKK--T------QWY 106 (280)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~w~~~l~~~~~~~~~~--~------~~y 106 (280)
..-.-++.+|+.|+.++...+.+... -+....+.+.|.+..| .+++.++.+...... .....+ . .+-
T Consensus 76 ~~d~~~~~~pk~k~~~~~~l~~~~~~--l~~g~~i~~~G~~~~g--~~s~~k~~~~~~~~~-~~~~ar~~~l~~~~~~~~ 150 (342)
T PRK09489 76 DCDTLIYYWPKNKQEAQFQLMNLLSL--LPVGTDIFVVGENRSG--VRSAEKMLADYAPLN-KIDSARRCGLYHGRLEKQ 150 (342)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHh--CCCCCEEEEEEecccc--HHHHHHHHHHhcCcc-ccccceeEEEEEEecccc
Confidence 34556999999999999998887663 2235677789999999 677787777764321 100000 0 000
Q ss_pred --HHHHhhhhcccccccccccCccccccc-cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-c
Q 023562 107 --REGISYWEGVEASVDGVLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-E 182 (280)
Q Consensus 107 --~~~~~yW~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~-~ 182 (280)
....+||..... .+-.+.....++.. .++....++...+.. ....+|||+|||+|.++..+++++.. +
T Consensus 151 ~~~~~~~~~~~y~~-~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~-------~~~g~VLDlGCG~G~ls~~la~~~p~~~ 222 (342)
T PRK09489 151 PVFDADKFWKEYQV-DGLTVKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSAVLARHSPKIR 222 (342)
T ss_pred CCCcccccceeeec-CCEEEEeCCCCCCCCCCCHHHHHHHHhccc-------cCCCeEEEeccCcCHHHHHHHHhCCCCE
Confidence 011345542211 01011122223222 333333454444432 23458999999999999999988654 7
Q ss_pred EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCC---hhhHHHHHHHHHHcC
Q 023562 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT---DDDFVSFFKRAKVGL 259 (280)
Q Consensus 183 v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~---~~d~~~~l~~~~r~L 259 (280)
|+++|+|+.|++.|++++..+++ ..++...|+.... .++||+|+++..+|+.. ......+++.+.+.|
T Consensus 223 v~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~L 293 (342)
T PRK09489 223 LTLSDVSAAALESSRATLAANGL-------EGEVFASNVFSDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHL 293 (342)
T ss_pred EEEEECCHHHHHHHHHHHHHcCC-------CCEEEEccccccc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhc
Confidence 99999999999999999877543 3566777765432 47899999998887632 235679999999999
Q ss_pred CCCcEEEEEecc
Q 023562 260 KPGGFFVLKENI 271 (280)
Q Consensus 260 kpGG~lii~e~~ 271 (280)
+|||.++++-|-
T Consensus 294 kpgG~L~iVan~ 305 (342)
T PRK09489 294 NSGGELRIVANA 305 (342)
T ss_pred CcCCEEEEEEeC
Confidence 999999998763
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-16 Score=132.41 Aligned_cols=111 Identities=13% Similarity=0.002 Sum_probs=88.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCC------CCCCCcceeEEEccCCCCCCC-CC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPE-TG 229 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~------~~~~~~~i~~~~~d~~~~~~~-~~ 229 (280)
++.+|||+|||.|..+..|+++|+. |+++|+|+.+++.+.+........ ......++++.++|+.+++.. .+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 5579999999999999999999886 999999999999864432111000 000134689999999888643 35
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||.|+-..+++|++++....+++.+.++|||||.+++.
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 799999999999999888899999999999999975554
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-16 Score=136.79 Aligned_cols=100 Identities=23% Similarity=0.392 Sum_probs=86.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..+++... .+|+++|+|+.|++.|+++.. ++.+..+|+.++... ++||+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~~~~~~-~~fD~ 96 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIASWQPP-QALDL 96 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchhccCCC-CCccE
Confidence 44668999999999999999987753 379999999999999998753 478899998877544 69999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+++.+++|++ +...+++++.++|||||.+++.
T Consensus 97 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 97 IFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999998 6679999999999999999886
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=134.65 Aligned_cols=105 Identities=23% Similarity=0.247 Sum_probs=91.1
Q ss_pred cEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccc
Q 023562 160 VALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~ 238 (280)
+|||+|||+|..+..+++.+. .+|+++|+|+.+++.+++++...++ ..++++...|+...+.+ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccccCCCC-CCCCEeehHH
Confidence 699999999999999988764 3799999999999999999876544 45789999998666544 6899999999
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+++|++ +...+++++.++|+|||++++.+.+.
T Consensus 76 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 76 VIHHIK--DKMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred HHHhCC--CHHHHHHHHHHHcCCCCEEEEEEccc
Confidence 999998 67799999999999999999998753
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-16 Score=137.51 Aligned_cols=110 Identities=24% Similarity=0.187 Sum_probs=93.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-CC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|..+..++... .. +|+++|+|+.|++.|+++....++ .++++..+|+++++.++++||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCCCCCCcee
Confidence 4567899999999999888666553 32 699999999999999998765433 368899999998887668999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+|+++.+++|.+ +...+++++.++|||||+|++++.+.
T Consensus 149 ~Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 149 VIISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred EEEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 999999999987 66789999999999999999988764
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-16 Score=138.96 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=87.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..++..+...|+|+|+|+.|+..++......+ ...++.+...++++++.. .+||+|
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~-----~~~~v~~~~~~ie~lp~~-~~FD~V 192 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD-----NDKRAILEPLGIEQLHEL-YAFDTV 192 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc-----cCCCeEEEECCHHHCCCC-CCcCEE
Confidence 34567999999999999998988887789999999999986543211100 024577888888888754 589999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|+.+++|++ +...++++++++|||||.|++.+.+
T Consensus 193 ~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 193 FSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred EEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 9999999998 6679999999999999999987544
|
Known examples to date are restricted to the proteobacteria. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-16 Score=136.39 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=78.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||||.++..+++....+|+|+|+|+.|++.|+++. .+.++|++++++++++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechhhCCCCCCCEEEEEe
Confidence 35799999999999999998774337999999999999998642 2467899999888899999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCC
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPG 262 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpG 262 (280)
.++++|++ ++..+++++.|+|||.
T Consensus 117 ~~~l~~~~--d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 117 SFALHASD--NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred cChhhccC--CHHHHHHHHHHHhcCc
Confidence 99999988 6779999999999994
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.7e-16 Score=145.60 Aligned_cols=108 Identities=23% Similarity=0.416 Sum_probs=92.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC--CCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~fDlV 234 (280)
++.+|||+|||+|.++..+++.+ .+|+++|+|+.|++.+++.... ..++.++++|+.+ +++++++||+|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH--------YKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEecccccccCCCCCCEEEE
Confidence 45689999999999999998775 4699999999999988764332 3568899999864 45556799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
+++++++|++++++..+++++.++|||||++++.|++..
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 999999999988889999999999999999999998864
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=131.17 Aligned_cols=103 Identities=24% Similarity=0.378 Sum_probs=90.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.+.+|||+|||+|.++..+++.+.. +++++|+|+.+++.++++.. .++.++.+|+.+.+.++++||+|+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~fD~vi 103 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKLPLEDSSFDLIV 103 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhCCCCCCceeEEE
Confidence 4578999999999999999888654 68999999999999998764 257889999998886668999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++.+++|+. +...++.++.++|+|||++++.+..
T Consensus 104 ~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 104 SNLALQWCD--DLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred Ehhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999999987 6679999999999999999998653
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-16 Score=125.79 Aligned_cols=98 Identities=28% Similarity=0.379 Sum_probs=79.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+...+. +++++|+|+.+++. . +..+...+......++++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------R----------NVVFDNFDAQDPPFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------T----------TSEEEEEECHTHHCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------h----------hhhhhhhhhhhhhccccchhhHh
Confidence 4667999999999999999977767 79999999999997 1 12223332233333458999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++.+++|++ +...+++++.++|||||++++++...
T Consensus 84 ~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 84 CNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999999999 67899999999999999999998764
|
... |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-17 Score=124.24 Aligned_cols=96 Identities=25% Similarity=0.378 Sum_probs=62.4
Q ss_pred EEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CC-CCcEEEEEccc
Q 023562 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PE-TGRYDVIWVQW 238 (280)
Q Consensus 162 LDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~-~~~fDlV~~~~ 238 (280)
||+|||+|.++..++++... +++++|+|+.|++.+++++..... .+......+..+.. .. .++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhhcccccccceehhhh
Confidence 79999999999999988433 799999999999988888766321 22233333332221 11 25999999999
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEE
Q 023562 239 CIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (280)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (280)
++||++ ++..+++++.++|+|||+|
T Consensus 75 vl~~l~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLE--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred hHhhhh--hHHHHHHHHHHHcCCCCCC
Confidence 999995 7889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-16 Score=127.55 Aligned_cols=103 Identities=29% Similarity=0.440 Sum_probs=84.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.-.++||+|||+|.++..|+.+ .++++++|+|+.+|+.|+++... ..+++|.+.++.++.++ ++||+|++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~P~-~~FDLIV~ 112 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFWPE-GRFDLIVL 112 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---S-S-EEEEEE
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCCCC-CCeeEEEE
Confidence 3468999999999999999866 46799999999999999999987 46899999999887654 89999999
Q ss_pred cchhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 237 QWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 237 ~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+.+++|+++ +++..++.++...|+|||.+++-.
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999986 688999999999999999999963
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.5e-16 Score=135.42 Aligned_cols=117 Identities=20% Similarity=0.320 Sum_probs=90.8
Q ss_pred CCCccEEEeecCccH----HHHHHHHhcC------CcEEEEeCCHHHHHHHHHHcCcC----CCC---------------
Q 023562 156 NQHLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPE----NHM--------------- 206 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~----~s~~l~~~~~------~~v~~vD~S~~~l~~A~~~~~~~----~~~--------------- 206 (280)
.++.+|+|+|||+|. +++.+++.+. .+|+|+|+|+.||+.|++..-.. ++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 356799999999996 4555555432 27999999999999999864210 000
Q ss_pred --CCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--eccC
Q 023562 207 --APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (280)
Q Consensus 207 --~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (280)
......+++|.+.|+.+.+++.++||+|+|.++++|+++++...+++++.++|+|||++++. |.+.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~~ 247 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESLP 247 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccCC
Confidence 00112468999999998876668999999999999999888889999999999999999995 6553
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-16 Score=128.29 Aligned_cols=113 Identities=22% Similarity=0.291 Sum_probs=92.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCccee-EEEccCCCCC-CCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT-PETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~fDlV 234 (280)
....||++|||||..-.+.-..-..+|+++|++++|-+.+.+.+++.. +.++. |..++.++++ .++++||.|
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k------~~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK------PLQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc------CcceEEEEeechhcCcccccCCeeeE
Confidence 345789999999987664322223379999999999999998887742 34555 8999999997 678999999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC-CCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR-SGSE 277 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~-~~~~ 277 (280)
++..+++... +..+.++++.|+|||||.+++.|++.. .+|+
T Consensus 150 V~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~ 191 (252)
T KOG4300|consen 150 VCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW 191 (252)
T ss_pred EEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccccchHH
Confidence 9999999888 777999999999999999999999973 4443
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-15 Score=129.08 Aligned_cols=217 Identities=19% Similarity=0.185 Sum_probs=145.2
Q ss_pred CCcceeeeehhhHHHHHHHHhhhccCCCCCCCcccccccccCCCcccccHHHHHHHhhcCCccc--chhhhHHH-H----
Q 023562 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQ--QEKKTQWY-R---- 107 (280)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~w~~~l~~~~~~--~~~~~~~y-~---- 107 (280)
....-|+.||+.++.++.+.+.....- ++...+.+.|...+| ..+..+|..+..+..... .+....+| .
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~--~~g~~i~v~g~~~~g--~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARL--PPGGEIVVVGEKRDG--VRSAEKMLEKYGGPTKTDSARHCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhC--CCCCeEEEEecccch--HHHHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence 455678999999999999988877733 224566688888888 778888888776542111 01111111 1
Q ss_pred --HHHhhhhcccccccccccCccccccc-cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-cE
Q 023562 108 --EGISYWEGVEASVDGVLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EV 183 (280)
Q Consensus 108 --~~~~yW~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v 183 (280)
....+|.......+..+.+.+.++.. .++...++|...+.. ....+|||+|||+|.++..+++..+. ++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~-------~~~~~vlDlGCG~Gvlg~~la~~~p~~~v 185 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPP-------DLGGKVLDLGCGYGVLGLVLAKKSPQAKL 185 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCc-------cCCCcEEEeCCCccHHHHHHHHhCCCCeE
Confidence 11233332221222223333344433 566666676666542 33459999999999999999988875 89
Q ss_pred EEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCCh---hhHHHHHHHHHHcCC
Q 023562 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLK 260 (280)
Q Consensus 184 ~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~---~d~~~~l~~~~r~Lk 260 (280)
+.+|+|..+++.|++++..++. .+..++..|+.+-. . ++||+|+||--||-=.. .--.+++....+.|+
T Consensus 186 tmvDvn~~Av~~ar~Nl~~N~~------~~~~v~~s~~~~~v-~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~ 257 (300)
T COG2813 186 TLVDVNARAVESARKNLAANGV------ENTEVWASNLYEPV-E-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLK 257 (300)
T ss_pred EEEecCHHHHHHHHHhHHHcCC------CccEEEEecccccc-c-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhc
Confidence 9999999999999999987644 22245666654422 2 49999999977763221 112489999999999
Q ss_pred CCcEEEEEec
Q 023562 261 PGGFFVLKEN 270 (280)
Q Consensus 261 pGG~lii~e~ 270 (280)
+||.++|+-|
T Consensus 258 ~gGeL~iVan 267 (300)
T COG2813 258 PGGELWIVAN 267 (300)
T ss_pred cCCEEEEEEc
Confidence 9999999988
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-15 Score=128.10 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=92.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++.. . .+++++|+|+.+++.++++.... ..++++...|+..++..+++||
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccccCCCCCCCce
Confidence 4567899999999999999998875 2 37999999999999999883321 3568899999988776668999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++..+++|++ +...+++++.++|+|||.+++.+.
T Consensus 90 ~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 90 AVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred EEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEec
Confidence 999999999998 677999999999999999999874
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=136.76 Aligned_cols=105 Identities=23% Similarity=0.175 Sum_probs=90.1
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..+++... .+|+++|+|+.|++.|+++... .++++..+|++++++++++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeEE
Confidence 3567999999999999998887642 3799999999999999987642 35788999999888777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+++.+++|++ +...+++++.++|+|||.+++.+.+
T Consensus 183 Is~~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 183 VSAGSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred EEcChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999999988 5568999999999999999987654
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=144.61 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=91.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDl 233 (280)
++.+|||+|||+|..+..+++.... +|+|+|+|+.|++.|+++.... ..+++++++|+.+++ +++++||+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-------g~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-------GRSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-------CCCeEEEEcchHhCccccCCCCEEE
Confidence 4679999999999999888876543 8999999999999999886542 245778889988776 56689999
Q ss_pred EEccchhhcC-----------ChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 234 IWVQWCIGHL-----------TDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 234 V~~~~~l~~~-----------~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
|+++.++|++ ++.++..+++++.++|||||.+++.|.+..
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 9999988865 235778999999999999999999987643
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=125.78 Aligned_cols=102 Identities=23% Similarity=0.231 Sum_probs=85.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|||+|||+|..+..++.... .+|+++|+|+.|++.|+++.+..++ .++++.++|+.++.. .++||+|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC-CCCccEEE
Confidence 468999999999999998886543 3899999999999999999887644 348999999988776 57999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++.. . ++..+++.+.+.|||||.+++.+..
T Consensus 118 ~~~~----~--~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 118 SRAV----A--SLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred Eccc----c--CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 8752 2 5678999999999999999998644
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-15 Score=137.04 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=90.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++....+|+++|+|+.|++.|+++... ..+++...|..++ +++||+|
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhhc---CCCCCEE
Confidence 457789999999999999989877544799999999999999998743 2477888887665 3689999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++..+++|+++.++..+++++.++|||||++++.+..
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 9999999998778889999999999999999997643
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=129.19 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=94.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
++.+|||+|||+|.++..++..+. .+++++|+++.+++.+++++...+. ..++++...|+.+.+.++++||+|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEecccccCCCCCCCccEE
Confidence 567999999999999999988874 5899999999999999998765322 356889999998877666799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++..+++++. +...+++++.++|+|||.+++.|...
T Consensus 126 ~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 126 TIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred EEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecC
Confidence 9999999988 67799999999999999999987654
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=128.76 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=83.2
Q ss_pred CCCccEEEeecCccHHHHHHHHh----cCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCc
Q 023562 156 NQHLVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~----~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 230 (280)
.++.+|||+|||+|.++..+++. ++. +|+++|+|+.|++.|+++... .++++.+.+...++..+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCCC
Confidence 45679999999999999888753 332 799999999999999987653 2456666666666555679
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
||+|+++.++||++++++..+++++.++++ |.+++.+.
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 999999999999998778899999999998 55555543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=125.77 Aligned_cols=103 Identities=22% Similarity=0.369 Sum_probs=92.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
.....+|.|+|||+|..+..|+++++. .|+|+|.|+.||+.|+++. .+++|..+|+.+|.++ .+.|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w~p~-~~~dl 95 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTWKPE-QPTDL 95 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhcCCC-Cccch
Confidence 456679999999999999999998776 8999999999999998886 4589999999999876 68999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--ecc
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENI 271 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~ 271 (280)
++++-+|+.++ |-..+|.++...|.|||++.+. +|.
T Consensus 96 lfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 96 LFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred hhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 99999999999 6668999999999999999986 554
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.61 E-value=8e-15 Score=125.05 Aligned_cols=106 Identities=20% Similarity=0.266 Sum_probs=92.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
++.+|||+|||+|.++..+++.+.. +++++|+++.+++.++++... ..++++..+|+.+.+...++||+|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--------~~~i~~~~~d~~~~~~~~~~~D~i 110 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--------PLNIEFIQADAEALPFEDNSFDAV 110 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--------CCCceEEecchhcCCCCCCcEEEE
Confidence 5679999999999999999888764 799999999999999988752 346889999998877666789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+++.+++|++ +...+++++.+.|+|||++++.+...
T Consensus 111 ~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 111 TIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 9999999988 67799999999999999999987643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.5e-15 Score=130.77 Aligned_cols=160 Identities=31% Similarity=0.499 Sum_probs=125.0
Q ss_pred hhhHHHHHHHhhhhcccccccc-cccCcccccc---ccccchHHHHHHHHhccCCCc--cCCCCccEEEeecCccHHHHH
Q 023562 101 KKTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDRFPNA--RNNQHLVALDCGSGIGRITKN 174 (280)
Q Consensus 101 ~~~~~y~~~~~yW~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~l~~~l~~~l~~~--~~~~~~~VLDlGcG~G~~s~~ 174 (280)
....+|+++..||.....+.+| .+++|...+. .++..+..++..++..++.+. +...-...+|+|.|.|+++..
T Consensus 115 ~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ 194 (342)
T KOG3178|consen 115 NTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKN 194 (342)
T ss_pred hhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHH
Confidence 3457799999999999888888 6778766655 566677777777776433210 012246889999999999999
Q ss_pred HHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHH
Q 023562 175 LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKR 254 (280)
Q Consensus 175 l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~ 254 (280)
++. .+.+|.++++....+..++..+. . .++.+-+|+..-.+ +-|+||+.|++||++|++..++|++
T Consensus 195 ll~-~fp~ik~infdlp~v~~~a~~~~-~---------gV~~v~gdmfq~~P---~~daI~mkWiLhdwtDedcvkiLkn 260 (342)
T KOG3178|consen 195 LLS-KYPHIKGINFDLPFVLAAAPYLA-P---------GVEHVAGDMFQDTP---KGDAIWMKWILHDWTDEDCVKILKN 260 (342)
T ss_pred HHH-hCCCCceeecCHHHHHhhhhhhc-C---------CcceecccccccCC---CcCeEEEEeecccCChHHHHHHHHH
Confidence 998 45569999999999888877763 2 15666666654422 3469999999999999999999999
Q ss_pred HHHcCCCCcEEEEEeccCCC
Q 023562 255 AKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 255 ~~r~LkpGG~lii~e~~~~~ 274 (280)
|++.|+|||.|++.||++..
T Consensus 261 C~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 261 CKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred HHHhCCCCCEEEEEeccCCC
Confidence 99999999999999998754
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=123.05 Aligned_cols=111 Identities=11% Similarity=-0.034 Sum_probs=87.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCC------CCCCCcceeEEEccCCCCCCC-C
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPE-T 228 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~------~~~~~~~i~~~~~d~~~~~~~-~ 228 (280)
.++.+|||+|||.|..+..|+++|+. |++||+|+.+++.+.......... ......++++.++|+.++... .
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 34579999999999999999999886 999999999999875322111000 001135689999999988643 2
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+.||+|+-..+++|++++....+++.+.++|+|||.+++
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 589999999999999998889999999999999996444
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-14 Score=128.84 Aligned_cols=217 Identities=17% Similarity=0.161 Sum_probs=132.4
Q ss_pred cCCcceeeeehhhHHHHHHHHhhhccCCCCCCCcccccccccCCCcccccHHHHHHHhhcCCcccchhhhHHHHHHH---
Q 023562 34 AKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGI--- 110 (280)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~w~~~l~~~~~~~~~~~~~y~~~~--- 110 (280)
....+-|+.+|+.+..+..........- .++..++.|.+..|- -.+..+...+.++... .+..++++.
T Consensus 105 ~~~d~vl~~~PK~~~~l~~~l~~l~~~l---~~~~~ii~g~~~k~i-~~~~~~~~~k~l~~~~-----~~~~~~kaR~~~ 175 (378)
T PRK15001 105 QQPGVVLIKVPKTLALLEQQLRALRKVV---TSDTRIIAGAKARDI-HTSTLELFEKVLGPTT-----TTLAWKKARLIN 175 (378)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHhhC---CCCCEEEEEEecCCC-cHHHHHHHHHHhCccc-----hhhhhhhhhhee
Confidence 3455678899999998888877665533 233444455555441 1222444455554311 111122211
Q ss_pred --hhhhcc---ccc-------ccccccCccccccc-cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHH
Q 023562 111 --SYWEGV---EAS-------VDGVLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLI 177 (280)
Q Consensus 111 --~yW~~~---~~~-------~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~ 177 (280)
-|+... +.. ..-.+...+.++.. .++....++...+.. ....+|||+|||+|.++..+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gVFs~~~LD~GtrllL~~lp~-------~~~~~VLDLGCGtGvi~i~la~ 248 (378)
T PRK15001 176 CTFNEPPLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIGLTLLD 248 (378)
T ss_pred ccCCCCCCcCCCceeEEEEcCceEEEEecCCccCCCCcChHHHHHHHhCCc-------ccCCeEEEEeccccHHHHHHHH
Confidence 111100 000 00011112333332 345555665555532 2235999999999999999998
Q ss_pred hcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhc---CChhhHHHHHH
Q 023562 178 RYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH---LTDDDFVSFFK 253 (280)
Q Consensus 178 ~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~---~~~~d~~~~l~ 253 (280)
+++. +|+++|+|+.|++.|++++..++.. ...++++...|..+.. ++.+||+|+|+-.+|. +++.....+++
T Consensus 249 ~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~---~~~~v~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~ 324 (378)
T PRK15001 249 KNPQAKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFH 324 (378)
T ss_pred hCCCCEEEEEECCHHHHHHHHHHHHHcCcc---cCceEEEEEccccccC-CCCCEEEEEECcCcccCccCCHHHHHHHHH
Confidence 8755 8999999999999999998654321 0136788888875432 2358999999966653 33344578999
Q ss_pred HHHHcCCCCcEEEEEec
Q 023562 254 RAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 254 ~~~r~LkpGG~lii~e~ 270 (280)
.+.++|+|||.+++.-|
T Consensus 325 ~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 325 HARRCLKINGELYIVAN 341 (378)
T ss_pred HHHHhcccCCEEEEEEe
Confidence 99999999999999854
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=131.07 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=94.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..+..+|||+|||+|.++..++++++. +++++|. +.+++.+++++...++ ..+++++.+|+.+.+++ .+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl-----~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc-----cceEEEEecCccCCCCC--CCCE
Confidence 456679999999999999999988765 7999997 7999999998877654 45789999998765443 3799
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
|++..++|+.+++....+++++++.|+|||.+++.|.+..
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 9999999998877778999999999999999999998653
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-15 Score=122.46 Aligned_cols=100 Identities=23% Similarity=0.243 Sum_probs=82.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|||+|||+|..+..++..+.. +|+++|+|+.|++.++++.+..++ .+++++++|+.++.. .++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~~~-~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDFQH-EEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhccc-cCCccEEE
Confidence 3679999999999999988766543 799999999999999988776433 358999999988753 47999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+.. ++ ++..+++.+.++|+|||.+++..
T Consensus 115 s~~-~~-----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRA-LA-----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehh-hh-----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 876 33 45578899999999999999863
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-14 Score=110.65 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=82.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD 232 (280)
..++.+|||+|||+|.++..++++.. .+|+++|+|+.+++.+++++...+. .+++++..|+... +....+||
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------SNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEeccccccChhhcCCCC
Confidence 34456999999999999999998754 3799999999999999988765432 3578888887653 22236899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++..... ....+++.+.+.|+|||.+++.
T Consensus 91 ~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 91 RVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 999976543 4568999999999999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.3e-15 Score=124.25 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=84.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC-CCCC--CCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT--PETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~fD 232 (280)
++.+|||+|||+|..+..+++.... +|+++|+|+.|++.|+++....++ .++.++++|+ +.++ .++++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHHHHcCccccc
Confidence 4568999999999999999876543 799999999999999998765432 4689999998 6654 4567899
Q ss_pred EEEccchhhcCC------hhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~------~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|++++...+.. ......+++++.++|||||.|++..
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 999876542211 1124689999999999999999974
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=117.45 Aligned_cols=121 Identities=23% Similarity=0.257 Sum_probs=93.2
Q ss_pred ccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc
Q 023562 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (280)
Q Consensus 135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~ 213 (280)
+.....+|.+.+... +..+|||+|||+|.++..+++++.. +|+++|+|+.+++.+++++..+++ . +
T Consensus 16 ~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~-~ 82 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL-----E-N 82 (170)
T ss_dssp HHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC-----T-T
T ss_pred CCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc-----c-c
Confidence 344445666666532 4578999999999999999988776 799999999999999999988654 2 2
Q ss_pred eeEEEccCCCCCCCCCcEEEEEccchhhcCCh---hhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 214 i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~---~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++++..|+.+... +++||+|+++-.++.-.+ +-+..+++.+.+.|+|||.+++.-
T Consensus 83 v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 83 VEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp EEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 8899999866544 479999999976654442 235789999999999999997753
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=122.93 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=88.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..++..+. .|+|+|+|+.|++.|++++...+. ..++.|.++|+.+.+ ++||+|++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~~~---~~fD~ii~ 125 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLLSLC---GEFDIVVC 125 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChhhCC---CCcCEEEE
Confidence 467999999999999999987655 699999999999999998865422 236899999988765 68999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
..+++|++++++..+++++.+++++++++.+.
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99999998778889999999999988777664
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=128.94 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=81.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++....+.. .....++.|...|+.++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAA-LPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccc-cccccceEEEEcchhhc---CCCcCEEEE
Confidence 457999999999999999998765 5999999999999999987643110 00024578888888765 378999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
..+++|++++....+++.+.+. .+||.++
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHhh-cCCEEEE
Confidence 9999999877777788888864 5665544
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=116.47 Aligned_cols=104 Identities=18% Similarity=0.316 Sum_probs=85.4
Q ss_pred cEEEeecCccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccc
Q 023562 160 VALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~-v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~ 238 (280)
+|||+|||+|.+...|++.++.. ++|+|+|+++++.|+..++..++ ...++|.+.|+.+-....++||+|+--.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~-----~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF-----SNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC-----CcceeEEEeeccCCcccccceeEEeecC
Confidence 99999999999999999999884 99999999999999998887765 4459999999988666668999998554
Q ss_pred hhhcC---C---hhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 239 CIGHL---T---DDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 239 ~l~~~---~---~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+.-+ + ...+...+..+.++|+|||+|+|+
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE
Confidence 33221 1 123356888999999999999996
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-14 Score=117.20 Aligned_cols=106 Identities=20% Similarity=0.140 Sum_probs=86.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..++..+. +|+++|+|+.|++.+++++... ..++++..+|+.+.. .++||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLN-------NVGLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHc-------CCceEEEEccccccc--CCcccEEEE
Confidence 446899999999999999988776 7999999999999999998654 235788888876643 358999999
Q ss_pred cchhhcCChh-------------------hHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 237 QWCIGHLTDD-------------------DFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 237 ~~~l~~~~~~-------------------d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+..+++.+++ .+..+++++.++|+|||.+++.++..
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 9877666431 14678999999999999999987653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-14 Score=119.06 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=81.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|..+..+++... .+|+++|+++.|++.|++++...++ ..+++++.+|+.+..+...+||
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----~~~v~~~~~d~~~~~~~~~~fD 144 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----WGVVEVYHGDGKRGLEKHAPFD 144 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEEECCcccCCccCCCcc
Confidence 45668999999999999988876532 3799999999999999998876543 3458899999877544457999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++..++.+++ +++.+.|+|||++++.
T Consensus 145 ~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 145 AIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred EEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 999998877665 3577899999999885
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=119.09 Aligned_cols=146 Identities=21% Similarity=0.334 Sum_probs=110.7
Q ss_pred HHHHhhhhcccccccccccCccccccccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC---cE
Q 023562 107 REGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN---EV 183 (280)
Q Consensus 107 ~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~---~v 183 (280)
..+..||+.. ...+...+...+.||.+.+...++.. .+...+||++|||.|.....+++-..+ .|
T Consensus 33 ~~~~k~wD~f-----------y~~~~~rFfkdR~wL~~Efpel~~~~-~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v 100 (264)
T KOG2361|consen 33 REASKYWDTF-----------YKIHENRFFKDRNWLLREFPELLPVD-EKSAETILEVGCGVGNTVFPLLKTSPNNRLKV 100 (264)
T ss_pred cchhhhhhhh-----------hhhccccccchhHHHHHhhHHhhCcc-ccChhhheeeccCCCcccchhhhcCCCCCeEE
Confidence 3556788732 12233344455678888877766521 122338999999999999999977555 79
Q ss_pred EEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcC
Q 023562 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGL 259 (280)
Q Consensus 184 ~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~L 259 (280)
.++|.|+.+|+..+++.... ..++...+.|+..- +++.+++|+|++.++|.-++++..+.+++++.++|
T Consensus 101 ~acDfsp~Ai~~vk~~~~~~-------e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~ll 173 (264)
T KOG2361|consen 101 YACDFSPRAIELVKKSSGYD-------ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLL 173 (264)
T ss_pred EEcCCChHHHHHHHhccccc-------hhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHh
Confidence 99999999999999987764 34455555555432 35568999999999999999999999999999999
Q ss_pred CCCcEEEEEecc
Q 023562 260 KPGGFFVLKENI 271 (280)
Q Consensus 260 kpGG~lii~e~~ 271 (280)
||||.+++.|..
T Consensus 174 KPGG~llfrDYg 185 (264)
T KOG2361|consen 174 KPGGSLLFRDYG 185 (264)
T ss_pred CCCcEEEEeecc
Confidence 999999998754
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5e-14 Score=124.31 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=86.9
Q ss_pred CCccEEEeecCccHHHHHH-HHh-cCC-cEEEEeCCHHHHHHHHHHcCc-CCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNL-LIR-YFN-EVDLLEPVSHFLDAARESLAP-ENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l-~~~-~~~-~v~~vD~S~~~l~~A~~~~~~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
.+.+|+|+|||.|.++..+ ++. ... +++++|+++.+++.|++.+.. .++ ..+++|..+|+.+.....++||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhcccccCCcC
Confidence 6689999999988554433 333 333 799999999999999999853 433 5679999999988653347899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++. +++++..++..++++.+.+.|+|||.+++-
T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 99999 999997778899999999999999999985
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-14 Score=123.98 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=77.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcC----CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~----~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
...+|||+|||+|.++..+++... ..++|+|+|+.|++.|+++. .++.+..+|+.++++++++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCcee
Confidence 446899999999999998886643 25899999999999998764 347889999999888778999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++.+. + ..++++.|+|||||++++..+
T Consensus 154 ~I~~~~~----~-----~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 154 AIIRIYA----P-----CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred EEEEecC----C-----CCHHHHHhhccCCCEEEEEeC
Confidence 9998654 1 246789999999999998743
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=117.74 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=87.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++... ...+++...++.+++ ...++||+|
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALES-------GLKIDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHc-------CCceEEEecCHHHhhhhcCCCccEE
Confidence 3567999999999999998887655 5999999999999999887543 234678888887764 234799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++..+++|.+ +...+++.+.+.|+|||.+++...
T Consensus 119 i~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 119 TCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999999988 666899999999999999998754
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=119.03 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=84.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+++.+. .|+++|+|+.|++.|++++...+. ..++++..+|+.. .+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGL-----AGNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCchh---ccCCcCEEE
Confidence 3567999999999999999988776 499999999999999998765432 2468888888543 247899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+..+++|++++++..+++++.+.+++++++.+
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 99999999988889999999998766555544
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=114.66 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=81.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..+++.+.. +|+++|+|+.+++.+++++...++ .+++++++|+.. .. .++||+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i~~~~~d~~~-~~-~~~~D~ 100 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------GNIDIIPGEAPI-EL-PGKADA 100 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCeEEEecCchh-hc-CcCCCE
Confidence 446679999999999999999887653 799999999999999998765432 357888888742 22 368999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|++....+ .+..+++.+.+.|+|||++++..
T Consensus 101 v~~~~~~~-----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 101 IFIGGSGG-----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEECCCcc-----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 99876543 34578999999999999998864
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=122.24 Aligned_cols=111 Identities=20% Similarity=0.248 Sum_probs=87.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCC----
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG---- 229 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~---- 229 (280)
++.+|||+|||+|..+..|++... .+|+++|+|+.||+.+++++.... ...++.++++|+.+. +....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-----p~~~v~~i~gD~~~~~~~~~~~~~~ 137 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-----PQLEVHGICADFTQPLALPPEPAAG 137 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-----CCceEEEEEEcccchhhhhcccccC
Confidence 457899999999999999998853 479999999999999998875421 124577889998763 32211
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
...++++..+++++++++...++++++++|+|||.++|.-+..
T Consensus 138 ~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred CeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 3345555678999998899999999999999999999875544
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.2e-14 Score=116.79 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=84.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD 232 (280)
...+|||+|||+|.++..++++.+. +++++|+++.|++.|++++...++ .+++++++|+.++. .+++++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCCCCcee
Confidence 3458999999999999999988665 899999999999999988776543 47999999997653 3346899
Q ss_pred EEEccchhhcCChh------hHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.|++++...+.... ....+++.+.++|||||.|++.
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 99988654332210 1157999999999999999886
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-15 Score=124.23 Aligned_cols=117 Identities=20% Similarity=0.255 Sum_probs=90.2
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
..+..++... . ..+-.++||+|||||..+..+... ..+++|||+|++|++.|.++--+. +..++
T Consensus 112 ~~l~emI~~~-~---~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD-----------~L~~A 175 (287)
T COG4976 112 ELLAEMIGKA-D---LGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYD-----------TLYVA 175 (287)
T ss_pred HHHHHHHHhc-c---CCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchH-----------HHHHH
Confidence 4555555432 1 334579999999999999987654 557999999999999999875442 22445
Q ss_pred cCCCCC--CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE-eccCCC
Q 023562 220 PLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-ENIARS 274 (280)
Q Consensus 220 d~~~~~--~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~-e~~~~~ 274 (280)
++..|. ..+++||+|++..|+.|+. ++..++--+...|+|||.|.|+ |....+
T Consensus 176 ea~~Fl~~~~~er~DLi~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 176 EAVLFLEDLTQERFDLIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred HHHHHhhhccCCcccchhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 555443 3457999999999999999 8889999999999999999998 665443
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-13 Score=119.95 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=81.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|+++...+++ ...+.+...+.... ..++||+|++
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~-----~~~~~~~~~~~~~~--~~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV-----SDRLQVKLIYLEQP--IEGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEecccccc--cCCCceEEEE
Confidence 5679999999999999988877766899999999999999999876544 23455565553322 2468999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+...+ .+..++.++.++|||||+++++...
T Consensus 232 n~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 232 NILAE-----VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ecCHH-----HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 86532 4568999999999999999998654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-13 Score=115.45 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=88.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV~ 235 (280)
.+.+|||+|||+|.++..+++.+. .++++|+|+.+++.+++++...+. .++++...|+.+++.. +++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhcCCCCCccEEE
Confidence 467999999999999998887765 599999999999999998765321 1578888888777543 37899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+..+++|+. +...+++.+.++|+|||.+++...
T Consensus 118 ~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 118 CMEVLEHVP--DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999988 667999999999999999998754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.2e-14 Score=107.05 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=85.5
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDlV~ 235 (280)
+.+|||+|||+|.++..+++.+..+++++|+++..++.++.++...+. ..+++++++|+.+.. .++++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhchhhccCceeEEEE
Confidence 358999999999999999988845899999999999999999887544 457999999998765 5568999999
Q ss_pred ccchhhcCC------hhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~------~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++-.+.... ......+++++.++|+|||.+++.-
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 985544221 1235789999999999999998863
|
... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.3e-13 Score=113.52 Aligned_cols=124 Identities=13% Similarity=-0.020 Sum_probs=96.4
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcC------CCCCCCCCcc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE------NHMAPDMHKA 213 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~------~~~~~~~~~~ 213 (280)
.+|...+... . ..++.+||+.|||.|..+..|+++|+. |+|+|+|+.+++.+.+..... +-.......+
T Consensus 30 p~L~~~~~~l-~---~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 104 (226)
T PRK13256 30 EFLVKHFSKL-N---INDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD 104 (226)
T ss_pred HHHHHHHHhc-C---CCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCc
Confidence 4555555432 1 335679999999999999999999996 999999999999986632111 0000111357
Q ss_pred eeEEEccCCCCCCC---CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 214 TNFFCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 214 i~~~~~d~~~~~~~---~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+++.++|+.+++.. .++||+|+-..+|++++++....+.+.+.++|+|||.+++.
T Consensus 105 i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 105 IEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred eEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 99999999998642 26899999999999999988899999999999999988775
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=115.19 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=80.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|..+..+++... .+|+++|+++.+++.|++++...++ .++++.++|......+.++||
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCcCCCcC
Confidence 55778999999999999987776632 3799999999999999999876543 468999999876554557999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++.....+++ ..+.+.|||||.+++.
T Consensus 148 ~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 148 RIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred EEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 999987665433 3566789999999885
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-13 Score=114.56 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=80.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|..+..+++.... +|+++|+++.+++.|++++...++ .++++.++|..+......+||
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD 148 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQGWEPLAPYD 148 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccCCcccCCCC
Confidence 456789999999999999988876433 599999999999999999877543 468899999876544446899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++.....+++ ..+.+.|+|||++++.
T Consensus 149 ~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 149 RIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred EEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 999887655443 4477889999999885
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-13 Score=114.73 Aligned_cols=105 Identities=15% Similarity=0.053 Sum_probs=81.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++...+ .++.++.+|+.+.. .+++||+|+
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~-------~~~~~~~~d~~~~~-~~~~fD~Vi 106 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG-------VDVDVRRGDWARAV-EFRPFDVVV 106 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC-------CeeEEEECchhhhc-cCCCeeEEE
Confidence 4567999999999999998887665589999999999999999886542 35778888887643 346899999
Q ss_pred ccchhhcCCh-------------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLTD-------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~-------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++-.+..... ..+..+++++.++|||||.+++.
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9843222110 12567899999999999999985
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-13 Score=116.12 Aligned_cols=107 Identities=20% Similarity=0.177 Sum_probs=88.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDl 233 (280)
...+|||+|||+|.++..++++.. .++++||+++.|.+.|++++..+++ ..+++++++|+.++. ....+||+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~~~Di~~~~~~~~~~~fD~ 118 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVIEADIKEFLKALVFASFDL 118 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEehhhHHHhhhcccccccCE
Confidence 468999999999999999988855 4899999999999999999988766 688999999999985 33357999
Q ss_pred EEccchhh----------------cCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIG----------------HLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~----------------~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+||--+. |...-+++.+++.+.++|||||.+.++
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 99983321 222224789999999999999999986
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-13 Score=113.64 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=85.7
Q ss_pred cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc
Q 023562 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (280)
Q Consensus 134 ~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~ 213 (280)
...++.+++..+... ......++|+|||+|..++.++ .++.+|+++|+|+.||+.|++.....-. ...
T Consensus 16 RP~YPtdw~~~ia~~------~~~h~~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL~~a~k~~~~~y~-----~t~ 83 (261)
T KOG3010|consen 16 RPSYPTDWFKKIASR------TEGHRLAWDVGTGNGQAARGIA-EHYKEVIATDVSEAMLKVAKKHPPVTYC-----HTP 83 (261)
T ss_pred CCCCcHHHHHHHHhh------CCCcceEEEeccCCCcchHHHH-HhhhhheeecCCHHHHHHhhcCCCcccc-----cCC
Confidence 344556666666542 1122379999999997777555 5577899999999999999887654211 223
Q ss_pred eeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 214 i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
..+...++.++.-.++++|+|++..++|+++ +..|++.++|+||+.|-++..
T Consensus 84 ~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd---le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 84 STMSSDEMVDLLGGEESVDLITAAQAVHWFD---LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ccccccccccccCCCcceeeehhhhhHHhhc---hHHHHHHHHHHcCCCCCEEEE
Confidence 4444555555544468999999999999875 678999999999998844443
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=115.84 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=81.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++.+... +|+++|+|+.+++.|++++...++ ..+++++++|+.+.. ++++||+|+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----~~~i~~~~~D~~~~~-~~~~fD~Iv 194 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIQSDLFAAL-PGRKYDLIV 194 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhcc-CCCCccEEE
Confidence 4568999999999999999887543 799999999999999999876544 346899999985432 335899999
Q ss_pred ccch------hhcCCh-----------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWC------IGHLTD-----------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~------l~~~~~-----------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++-- +.++.+ +.+..+++.+.+.|+|||++++-
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 8721 111110 12467899999999999999874
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.8e-13 Score=117.20 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=84.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.+.+|||||||.|+++..++.+++..|.|+|+++...-+.+......+. ...+.+....+++++. .+.||+|+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-----~~~~~~lplgvE~Lp~-~~~FDtVF~ 188 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-----DPPVFELPLGVEDLPN-LGAFDTVFS 188 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-----CccEEEcCcchhhccc-cCCcCEEEE
Confidence 5679999999999999999999999999999999887764432221110 1223344457778776 589999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..||.|.. +....|+.+++.|+|||.+++-.-+
T Consensus 189 MGVLYHrr--~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 189 MGVLYHRR--SPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred eeehhccC--CHHHHHHHHHHhhCCCCEEEEEEee
Confidence 99999998 6669999999999999999875433
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.8e-13 Score=115.16 Aligned_cols=98 Identities=19% Similarity=0.134 Sum_probs=75.4
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++..+++ ...+.+..++ .+||+|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~-----~~~~~~~~~~--------~~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV-----ELNVYLPQGD--------LKADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEccCC--------CCcCEEE
Confidence 35679999999999999987766666799999999999999999876533 1122222211 2799999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++... +.+..++.++.++|||||+++++...
T Consensus 185 ani~~-----~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 185 ANILA-----NPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred EcCcH-----HHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 87542 24568899999999999999998654
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=109.03 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=82.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (280)
..++.+|||+|||+|.++..++... . .+|+++|+|+.|++.+++++...++ ..++.++.+|+.++. ...++|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCCeEEEEechhhhHhhcCCCC
Confidence 5577899999999999999887653 2 3799999999999999998876542 246888888887642 223689
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
|+|++... ..++..+++.+.+.|+|||.+++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99998642 23667899999999999999987
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=115.16 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=81.0
Q ss_pred ccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++ ..+++++++|+.+.. ++++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----~~~i~~~~~D~~~~l-~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIESDLFAAL-PGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCcEEEEECchhhhC-CCCCccEEEEC
Confidence 68999999999999999887643 799999999999999999876543 346899999986532 23589999987
Q ss_pred ch------h-------hcCCh----------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 238 WC------I-------GHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 238 ~~------l-------~~~~~----------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
-. + .|-+. +.+..+++.+.+.|+|||.+++-
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 21 1 11111 12468899999999999999883
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=110.81 Aligned_cols=101 Identities=16% Similarity=0.075 Sum_probs=77.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~ 229 (280)
..++.+|||+|||+|.++..+++... ..|+++|+|+.|++.+.+++.. ..++.++.+|+.+. +.. +
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--------~~nv~~i~~D~~~~~~~~~l~-~ 140 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--------RKNIIPILADARKPERYAHVV-E 140 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--------cCCcEEEECCCCCcchhhhcc-c
Confidence 56778999999999999999887643 3799999999999988777654 24688888888652 122 5
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||+|++... .+.....+++++.++|||||.++++
T Consensus 141 ~~D~i~~d~~----~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 141 KVDVIYQDVA----QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred cCCEEEECCC----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 7999985422 1123345789999999999999993
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-12 Score=108.36 Aligned_cols=101 Identities=18% Similarity=0.074 Sum_probs=79.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|..+..++... .+|+++|+++.+++.+++++...++ .++++..+|..+.....++||+|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCcccCCCcCCCcCEE
Confidence 4567899999999999998776654 4799999999999999999876543 35888999875533334789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++...++++ .+.+.+.|+|||.+++.-.
T Consensus 149 ~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 998766544 3456789999999988643
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-12 Score=93.31 Aligned_cols=102 Identities=26% Similarity=0.337 Sum_probs=83.0
Q ss_pred cEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEEEccc
Q 023562 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW 238 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV~~~~ 238 (280)
+|+|+|||.|..+..++.....+++++|+++.+++.+++...... ..++++...|+.+... ..++||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhccccCCceEEEEEcc
Confidence 489999999999998887444589999999999999985332211 3568889999888763 457899999999
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+++++ ......+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98874 347789999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-12 Score=112.33 Aligned_cols=104 Identities=24% Similarity=0.250 Sum_probs=81.2
Q ss_pred ccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++ ..+++|+++|+.+.. +..+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d~~~~~-~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSNLFEPL-AGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhccC-cCCCccEEEEC
Confidence 68999999999999999887653 799999999999999999876543 335899999986532 22489999987
Q ss_pred c-------------hhhcCCh----------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 238 W-------------CIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 238 ~-------------~l~~~~~----------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
- ++.|-+. +.+..+++.+.+.|+|||++++-
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1 2222221 14678999999999999999873
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-12 Score=108.92 Aligned_cols=105 Identities=25% Similarity=0.277 Sum_probs=81.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.+.+|||+|||+|.++..++..... .++++|+|+.+++.++++....++ .++++.++|+.+. .+.++||+|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~-~~~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFEP-LPGGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhcc-CcCCceeEEE
Confidence 3468999999999999999877544 799999999999999998876543 3588999998663 3347899999
Q ss_pred ccchhh------cCCh------------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIG------HLTD------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~------~~~~------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++-.+. ++.. ..+..+++.+.++|+|||.+++.
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 863322 1111 12357899999999999999885
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.4e-12 Score=107.81 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=75.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
.++.+|||+|||+|.++..++++.. ..|+++|+++ |. . ..++.++++|+.+..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~--------~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P--------IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C--------CCCcEEEecCCCChHHHHHHHHH
Confidence 4567999999999999999988753 2799999988 21 1 135889999998853
Q ss_pred CCCCcEEEEEccchhhcCChh--h-------HHHHHHHHHHcCCCCcEEEEEecc
Q 023562 226 PETGRYDVIWVQWCIGHLTDD--D-------FVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~--d-------~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..+++||+|+++.+.++...+ + ...+++.+.++|+|||.|++..+.
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 345789999998766554321 1 246899999999999999997543
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.7e-12 Score=105.19 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=78.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..++.... .+|+++|+|+.|++.+++++...++ .+++++.+|+.+ ++.....+|
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------KNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CCeEEEECchHHHHhhCCCCCC
Confidence 45667999999999999998876543 3799999999999999998866432 358888888754 221113456
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.+++.. ..++..+++++.+.|+|||.+++..+
T Consensus 112 ~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 112 RVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 665432 12567899999999999999998754
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-12 Score=106.30 Aligned_cols=90 Identities=12% Similarity=-0.022 Sum_probs=72.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CC-CCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~fDlV 234 (280)
++.+|||+|||+|.++..+++.....++++|+|+.|++.++++ +++++++|+.+ ++ ..+++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhhcccccCCCCcCEE
Confidence 4568999999999999988766544789999999999988642 25677888865 32 445789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~Lkp 261 (280)
+++.+++|++ +...+++++.+.+++
T Consensus 80 i~~~~l~~~~--d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATR--NPEEILDEMLRVGRH 104 (194)
T ss_pred EEhhHhHcCc--CHHHHHHHHHHhCCe
Confidence 9999999998 566899999887765
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-12 Score=115.01 Aligned_cols=106 Identities=18% Similarity=0.124 Sum_probs=84.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fDl 233 (280)
.+..+||||||+|.++..++.+.+. .++|+|+++.|++.|.+++...++ .++.++++|+..+ .++++++|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHhhhhCCCCceeE
Confidence 3458999999999999999988765 899999999999999998876544 5789999998664 345689999
Q ss_pred EEccchhhcCChh----hHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDD----DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~----d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|++++...+.... ....+++.+.++|+|||.+.+.
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 9987553322111 1258999999999999999985
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6e-12 Score=110.92 Aligned_cols=105 Identities=23% Similarity=0.203 Sum_probs=81.1
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.+++..+..|...+.|+|++|.+++.|++|+..++.. ..+.....+....+ ..++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~-----~~~~~~~~~~~~~~-~~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE-----LLVQAKGFLLLEVP-ENGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc-----hhhhcccccchhhc-ccCcccEEE
Confidence 367899999999999999999889989999999999999999999887552 11222222332222 226999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|-.-+ -+..+...+.+.|||||+++++--+
T Consensus 235 ANILA~-----vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 235 ANILAE-----VLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred ehhhHH-----HHHHHHHHHHHHcCCCceEEEEeeh
Confidence 985321 4558999999999999999998543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-12 Score=113.04 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=82.1
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
.....++... ..++.+|||+|||+|.+++..+..|..+|.++|+++.+++.|++|+..+++ ..++.+ .
T Consensus 149 ~lcl~~l~~~-----~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~-----~~~~~v--~ 216 (295)
T PF06325_consen 149 RLCLELLEKY-----VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGV-----EDRIEV--S 216 (295)
T ss_dssp HHHHHHHHHH-----SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT------TTCEEE--S
T ss_pred HHHHHHHHHh-----ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCC-----CeeEEE--E
Confidence 4444444443 335679999999999999988888888999999999999999999998765 233333 2
Q ss_pred cCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 220 d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
...+.. .++||+|++|-... -+..++..+.+.|+|||+++++--
T Consensus 217 ~~~~~~--~~~~dlvvANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 217 LSEDLV--EGKFDLVVANILAD-----VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp CTSCTC--CS-EEEEEEES-HH-----HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred Eecccc--cccCCEEEECCCHH-----HHHHHHHHHHHhhCCCCEEEEccc
Confidence 222222 37999999986532 556788899999999999999743
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-12 Score=103.55 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=71.4
Q ss_pred EEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCc
Q 023562 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263 (280)
Q Consensus 184 ~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG 263 (280)
+|+|+|+.||+.|+++....+. ....+++|+++|+.+++.++++||+|++.++++++. +...++++++|+|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCe
Confidence 5899999999999877543210 012468999999999998878999999999999998 77799999999999999
Q ss_pred EEEEEeccCC
Q 023562 264 FFVLKENIAR 273 (280)
Q Consensus 264 ~lii~e~~~~ 273 (280)
.+++.|....
T Consensus 76 ~l~i~d~~~~ 85 (160)
T PLN02232 76 RVSILDFNKS 85 (160)
T ss_pred EEEEEECCCC
Confidence 9999988653
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-12 Score=108.75 Aligned_cols=121 Identities=18% Similarity=0.156 Sum_probs=90.9
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCc-CCCCCC-----CCCcc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-ENHMAP-----DMHKA 213 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~-~~~~~~-----~~~~~ 213 (280)
..|...+.. +. ..++.+||..|||.|.....|+++|+. |+|+|+|+.+++.+.+.... ...... ....+
T Consensus 24 p~L~~~~~~-l~---~~~~~rvLvPgCG~g~D~~~La~~G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 24 PALVEYLDS-LA---LKPGGRVLVPGCGKGYDMLWLAEQGHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp HHHHHHHHH-HT---TSTSEEEEETTTTTSCHHHHHHHTTEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred HHHHHHHHh-cC---CCCCCeEEEeCCCChHHHHHHHHCCCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 455555554 22 456679999999999999999999884 99999999999998543322 100000 11246
Q ss_pred eeEEEccCCCCCCCC-CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEE
Q 023562 214 TNFFCVPLQDFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (280)
Q Consensus 214 i~~~~~d~~~~~~~~-~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (280)
++++++|+.+++... ++||+|+=..+|+-++++...++.+.+.++|+|||.+
T Consensus 99 i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 99 ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEE
T ss_pred eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcE
Confidence 899999999886543 5899999999999999999999999999999999993
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.9e-12 Score=113.09 Aligned_cols=108 Identities=14% Similarity=-0.034 Sum_probs=85.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++...+..+. .++|+|+++.|++.++.++...++ .++.+.++|+.+++..+++||+|
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGI------EDFFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCC------CCCeEEecchhcCCcccCCCCEE
Confidence 45667999999999999887765544 699999999999999999876544 23788999999988766899999
Q ss_pred Eccchhhc-------CChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 235 WVQWCIGH-------LTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 235 ~~~~~l~~-------~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+++-.+.. ...+-...+++.+.++|+|||++++.-
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 99732211 111235789999999999999988763
|
This family is found exclusively in the Archaea. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=102.43 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=80.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..++.++ .+++++|+|+.+++.+++++...+.. ..++.+...|+.+... +.+||+|++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~~~-~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFEPFR-GDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEecccccccc-ccCceEEEE
Confidence 55689999999999999998884 57999999999999999988664331 1127788888765433 358999998
Q ss_pred cchhhcCC-------------------hhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 237 QWCIGHLT-------------------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 237 ~~~l~~~~-------------------~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+..+.+.. ...+..+++++.++|+|||.+++..
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 75432211 1235679999999999999988763
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=107.44 Aligned_cols=104 Identities=21% Similarity=0.328 Sum_probs=87.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..+..+|+|||+|.|.++..++++++. +++.+|. |..++.+++ . .++++..+|+. -+.+ . +|+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~---------~rv~~~~gd~f-~~~P-~-~D~ 161 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A---------DRVEFVPGDFF-DPLP-V-ADV 161 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T---------TTEEEEES-TT-TCCS-S-ESE
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c---------cccccccccHH-hhhc-c-ccc
Confidence 345568999999999999999999887 8999997 888998888 1 46999999997 3333 4 999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCC--cEEEEEeccCCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPG--GFFVLKENIARS 274 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpG--G~lii~e~~~~~ 274 (280)
|++.+++|+.++++...+|+++++.|+|| |.|+|.|.+..+
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 99999999999999999999999999999 999999998644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.6e-12 Score=111.98 Aligned_cols=112 Identities=19% Similarity=0.207 Sum_probs=83.5
Q ss_pred CCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDl 233 (280)
.++.+||++|||.|..+..++++ ...+|++||+++.+++.|++.+...+.. .....+++++.+|...+. ...++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCcccE
Confidence 45679999999999999999876 4458999999999999999987542110 001457899999987653 23478999
Q ss_pred EEccchhhcCChhhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
|++...-.+.+...+ ..+++.+.+.|+|||++++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998643222222222 68999999999999998874
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=112.24 Aligned_cols=112 Identities=19% Similarity=0.255 Sum_probs=80.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCC----CCCCCCcceeEEEccCCCC------CC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH----MAPDMHKATNFFCVPLQDF------TP 226 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~----~~~~~~~~i~~~~~d~~~~------~~ 226 (280)
++.+|||+|||-|.....+.......++|+|+|...|+.|+++.....- ......-...|+.+|...- ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999999988888888888999999999999999999821100 0001123466778876532 22
Q ss_pred CCCcEEEEEccchhhcCC--hhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 227 ETGRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~--~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
...+||+|-|.++|||.= .+....+|+++.+.|+|||+|+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 225999999999999863 345577999999999999999987
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=112.89 Aligned_cols=104 Identities=20% Similarity=0.204 Sum_probs=78.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV 234 (280)
++.+|||+|||+|.++..++..... +|+++|+|+.|++.|++++... ..++++.++|+.+... ..++||+|
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-------g~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-------GARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCcEEEEEcchhccccccCCCccEE
Confidence 3468999999999999988876543 7999999999999999998764 2368999999865432 23589999
Q ss_pred Eccchhhc-----CCh------------------hhHHHHHHHHHHcCCCCcEEEE
Q 023562 235 WVQWCIGH-----LTD------------------DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 235 ~~~~~l~~-----~~~------------------~d~~~~l~~~~r~LkpGG~lii 267 (280)
+|+-.... ..+ +.+..+++.+.+.|+|||++++
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99743110 000 1245788888899999999876
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=109.01 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=81.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDlV 234 (280)
++.+|||+|||+|.++..++...+. +++++|+++.+++.|++++...+. ..+++++.+|..++ ...+++||+|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHhCCCCCCEE
Confidence 5678999999999999988877654 799999999999999998764321 35789999998664 2223689999
Q ss_pred Eccch-hhcCCh-hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWC-IGHLTD-DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~-l~~~~~-~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++... -...+. -....+++.+.+.|+|||++++-
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 97521 111111 11268999999999999999984
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=107.10 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=83.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------CC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~ 227 (280)
.++.+|||+|||+|..+..++.... .+|+++|+++++++.|+++++..++ ..+++++.+|+.+.- .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~~gda~~~L~~l~~~~~ 141 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFIQSDALSALDQLLNNDP 141 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEccHHHHHHHHHhCCC
Confidence 3567999999999999888876532 2899999999999999999988765 467899999987641 11
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.++||+|++... .+.+..++..+.+.|+|||.+++ ||+.
T Consensus 142 ~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~-dn~l 180 (234)
T PLN02781 142 KPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAF-DNTL 180 (234)
T ss_pred CCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEE-EcCC
Confidence 368999987532 34667899999999999998655 5554
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=105.98 Aligned_cols=106 Identities=26% Similarity=0.311 Sum_probs=80.4
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..++.... ..++++|+|+.+++.|++++.. .. ..++.+..+|+.+... +++||+|
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~~-----~~~i~~~~~d~~~~~~-~~~fD~I 179 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-GL-----GARVEFLQGDWFEPLP-GGRFDLI 179 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-CC-----CCcEEEEEccccCcCC-CCceeEE
Confidence 4567899999999999999988764 3799999999999999999761 11 3568999999855322 4689999
Q ss_pred Eccchhh------cCCh------------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIG------HLTD------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~------~~~~------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+++-... .+.+ +.+..+++++.+.|+|||++++.
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9863211 0110 23467889999999999999984
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=105.82 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=80.7
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
...+|||+|||+|.++..++.+. ..+|+++|+|+.|++.++++.. +++++++|+.++... .+||+|+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e~~~~-~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVFEFESN-EKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchhhhccc-CCCcEEE
Confidence 34689999999999999887764 3479999999999999998742 478899999887643 6899999
Q ss_pred ccchhhcCChhh------------------HHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLTDDD------------------FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~~d------------------~~~~l~~~~r~LkpGG~lii~ 268 (280)
++-.+.+.+..+ +..+++.....|+|+|.+++.
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 998877765432 356778889999999977665
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=106.87 Aligned_cols=115 Identities=15% Similarity=-0.007 Sum_probs=81.9
Q ss_pred HHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 142 l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
|...+...+......++.+|||+|||+|.++..++.... ..|++||+|+.|++...+.... ..|+.++..
T Consensus 117 laa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~ 188 (293)
T PTZ00146 117 LAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIE 188 (293)
T ss_pred HHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEEC
Confidence 443443334434467788999999999999999998753 2799999999866554444332 246788888
Q ss_pred cCCCC---CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 220 PLQDF---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 220 d~~~~---~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+... ....++||+|++.... +++...++.++.+.|||||.|+|.
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva~----pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVAQ----PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCCC----cchHHHHHHHHHHhccCCCEEEEE
Confidence 87642 1123589999987641 235557778999999999999995
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-11 Score=108.51 Aligned_cols=102 Identities=21% Similarity=0.201 Sum_probs=79.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++.... .|+++|+++.|++.|++++...+. .++.++.+|..+......+||
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhhcccccCCcc
Confidence 456689999999999999988876542 599999999999999998876543 358888998776554446899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++...+.+++ ..+.+.|+|||.+++..+
T Consensus 152 ~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 152 VIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred EEEECCchHHhH--------HHHHHhcCCCCEEEEEeC
Confidence 999986655433 345678999999988543
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=102.36 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=81.5
Q ss_pred HHhhhhcccccccccccCccccccccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeC
Q 023562 109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (280)
Q Consensus 109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~ 188 (280)
+.+.+.+.++.|+.+..||..........+.+.+...+.. ..+...|.|+|||.+.++..+- ... .|...|+
T Consensus 30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~------~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDL 101 (219)
T PF05148_consen 30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK------RPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDL 101 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT------S-TTS-EEEES-TT-HHHHH---S----EEEEES
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh------cCCCEEEEECCCchHHHHHhcc-cCc-eEEEeec
Confidence 3445555555566666666555444444555555555543 2345689999999999987543 333 4999996
Q ss_pred CHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 189 S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
-+ .+-.+..+|+...|++++++|+++++.+|+.- ++..+++++.|+|||||.+.|.
T Consensus 102 va---------------------~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 102 VA---------------------PNPRVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp S----------------------SSTTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEE
T ss_pred cC---------------------CCCCEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEE
Confidence 31 23346789999999999999999999888753 6788999999999999999999
Q ss_pred eccC
Q 023562 269 ENIA 272 (280)
Q Consensus 269 e~~~ 272 (280)
|-.+
T Consensus 158 EV~S 161 (219)
T PF05148_consen 158 EVKS 161 (219)
T ss_dssp EEGG
T ss_pred Eecc
Confidence 8765
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-11 Score=98.54 Aligned_cols=95 Identities=12% Similarity=0.005 Sum_probs=76.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fDl 233 (280)
.++.||||+|||.|.+...|.+.......|+|+++..+..+.++ .++++++|+++- .+++++||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhhCCCCCccE
Confidence 36789999999999999988875444799999999998877664 366889988763 266899999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+++.++.++. ....+++++.|+ |...+++
T Consensus 79 VIlsqtLQ~~~--~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 79 VILSQTLQAVR--RPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred EehHhHHHhHh--HHHHHHHHHHHh---cCeEEEE
Confidence 99999999998 555888888665 5555555
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-11 Score=98.07 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..++++. .+++++|+++.|++.+++++.. ..+++++.+|+.+++.++.+||.|
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcCCccccCCCEE
Confidence 3456789999999999999999884 5799999999999999998754 246899999999987665679999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+++-.++ +..+.+..+++.. .+.++|.+++-
T Consensus 82 i~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 82 VGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred EECCCcc-cHHHHHHHHHhcC--CCcceEEEEEE
Confidence 9886543 4433444444432 24578888775
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-11 Score=100.79 Aligned_cols=117 Identities=23% Similarity=0.391 Sum_probs=74.7
Q ss_pred CCCccEEEeecCccH----HHHHHHHh---cCC---cEEEEeCCHHHHHHHHHHcCc-------------------CC--
Q 023562 156 NQHLVALDCGSGIGR----ITKNLLIR---YFN---EVDLLEPVSHFLDAARESLAP-------------------EN-- 204 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~----~s~~l~~~---~~~---~v~~vD~S~~~l~~A~~~~~~-------------------~~-- 204 (280)
.++.+|+.+||++|. +++.+.+. ... +|.|+|+|+.+|+.|++-.=. .+
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 366899999999994 33333331 111 899999999999999873211 00
Q ss_pred C-CCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--eccC
Q 023562 205 H-MAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (280)
Q Consensus 205 ~-~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (280)
. ........+.|...|+.+..+..+.||+|+|.+|+.|++++....+++.+.+.|+|||++++- |.+.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l~ 180 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESLP 180 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--ST
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccCC
Confidence 0 011113578999999988434458999999999999999988899999999999999999996 6665
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.5e-11 Score=103.01 Aligned_cols=102 Identities=22% Similarity=0.224 Sum_probs=77.2
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--CCCcEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVI 234 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fDlV 234 (280)
+.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++... +++++++|+.+... ..++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~---------~~~~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA---------GGTVHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---------CCEEEEeechhhcchhcCCCEeEE
Confidence 458999999999999998876443 7999999999999999998653 24688888865421 12579999
Q ss_pred Eccchh------hcCChh------------------hHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCI------GHLTDD------------------DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l------~~~~~~------------------d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+++--. ..++++ -+..+++.+.++|+|||++++.
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 988321 111111 1458888999999999999875
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-11 Score=99.93 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=80.2
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fDlV~ 235 (280)
.+.-|||||||+|..+..+.+.+. .++|+|+|+.||+.|.+.- ...+++.+|+.. +++.+++||.+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e-----------~egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERE-----------LEGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhh-----------hhcCeeeeecCCCCCCCCCccceEE
Confidence 467899999999999998877774 6999999999999998732 235678888864 577789999999
Q ss_pred ccchhh---------cCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIG---------HLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~---------~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+..++. |.|...+..|+..++.+|++|+..++.
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 764432 334345778999999999999998885
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-11 Score=96.92 Aligned_cols=102 Identities=21% Similarity=0.178 Sum_probs=86.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
+.++.+++|+|||+|.++..++..++. +|+++|-++++++..++|....+. .|+..+.++.-+.-....++|.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------DNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------CcEEEEeccchHhhcCCCCCCE
Confidence 778899999999999999999955555 899999999999999999887653 6889999988765322237999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+.... . .++.+++.+...|||||.+++.
T Consensus 106 iFIGGg-~-----~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 106 IFIGGG-G-----NIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred EEECCC-C-----CHHHHHHHHHHHcCcCCeEEEE
Confidence 999987 3 4558999999999999999885
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.4e-11 Score=99.40 Aligned_cols=97 Identities=22% Similarity=0.160 Sum_probs=71.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
..++.+|||+|||+|.++..++.+... +|+++|+|+.+ . ..++.++++|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~---------~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P---------IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c---------CCCceEEEeeCCChhHHHHHHH
Confidence 456789999999999999988877533 69999999865 1 134678888887642
Q ss_pred -CCCCcEEEEEccchh--------hcCCh-hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 226 -PETGRYDVIWVQWCI--------GHLTD-DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l--------~~~~~-~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+.++||+|++..+. .|... .....+++.+.++|+|||.+++.
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 234689999986432 22111 23468999999999999999985
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.6e-11 Score=98.00 Aligned_cols=101 Identities=22% Similarity=0.188 Sum_probs=83.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||||||+|+.+.-|++.. .+|+.+|..+...+.|++++...|+ .|+.+.++|...--++..+||.|
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCcccCCCCCCCcCEE
Confidence 6788999999999999999666554 4799999999999999999988765 46999999986644444799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++......+|+ .+.+.|+|||++++-..
T Consensus 143 ~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 99988776662 25678999999998654
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-11 Score=113.57 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=78.9
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++ ..+++++++|+.+.. ..++||+|++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~~~-~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFENI-EKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhhhC-cCCCccEEEE
Confidence 468999999999999988876543 799999999999999999876543 346888999875432 2368999998
Q ss_pred cch--------------hhcCCh----------hhHHHHHHHHHHcCCCCcEEEE
Q 023562 237 QWC--------------IGHLTD----------DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 237 ~~~--------------l~~~~~----------~d~~~~l~~~~r~LkpGG~lii 267 (280)
+-. ..|-+. +.+..+++.+.+.|+|||.+++
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 621 111110 1246688899999999999987
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=110.05 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=85.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~ 228 (280)
..++.+|||+|||+|..+..+++... ..|+++|+++.+++.+++++...|+ .++.+.++|+..++ ...
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccccccccc
Confidence 45678999999999999999987642 2799999999999999999887654 35889999988765 234
Q ss_pred CcEEEEEcc------chhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 229 GRYDVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~------~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~e 269 (280)
++||.|++. .++.+-++ .+ ...++.++.+.|||||.++.+.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 689999953 34444332 11 3578999999999999998764
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=108.65 Aligned_cols=110 Identities=20% Similarity=0.111 Sum_probs=82.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--CCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~f 231 (280)
+.++.+|||+|||+|..+..+++... .+|+++|+|+.+++.++++++..++ ...+.+.++|...... ..++|
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-----~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-----TIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEecccccccccccccccc
Confidence 45678999999999999999887643 3799999999999999999987644 2234446666654432 34689
Q ss_pred EEEEcc------chhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~------~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~e 269 (280)
|.|++. .++++.++ .+ ...++.++.++|||||.+++++
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999842 44555442 11 3579999999999999999874
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=101.71 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=83.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
+.++.+|||+|||+|..+..+++... ..|+++|+++.+++.++++++..++ .++.+...|...++...++||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHHhhhhccCCC
Confidence 45678999999999999998887643 2799999999999999999987644 358888889877654446799
Q ss_pred EEEcc------chhhcCC-------hh-------hHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQ------WCIGHLT-------DD-------DFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~------~~l~~~~-------~~-------d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.|++. .++.+-+ +. ....+++.+.+.|||||+++.+.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99853 2222211 11 12469999999999999998764
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=108.56 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=83.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...|+ .++++.++|+.++.. +++||
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~~~-~~~fD 320 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSFSP-EEQPD 320 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCccccccc-CCCCC
Confidence 44667999999999999988876532 2799999999999999999987654 368899999988753 36899
Q ss_pred EEEcc------chhh-------cCChhh-------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQ------WCIG-------HLTDDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~------~~l~-------~~~~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|++. .++. +.++.+ ...++.++.++|||||+++++.
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99952 2221 122222 2468999999999999999864
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-10 Score=107.69 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=82.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~f 231 (280)
..++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...++ +++++++|+.++. ...++|
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCcccchhhcccCCC
Confidence 45678999999999999999998765 3799999999999999999877543 3678899987653 234689
Q ss_pred EEEEccc------hhhcC-------Chhh-------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQW------CIGHL-------TDDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~------~l~~~-------~~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (280)
|.|++.- ++.+- .+.+ ...++..+.++|||||.++++.
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999431 12111 1111 2478999999999999999875
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-11 Score=100.51 Aligned_cols=101 Identities=22% Similarity=0.156 Sum_probs=75.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|+.+.-++..... .|+++|+.+...+.|++++...++ .++.+.++|...-..+..+||
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~g~~~~apfD 143 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSEGWPEEAPFD 143 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGGTTGGG-SEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhhccccCCCcC
Confidence 678899999999999999977765332 599999999999999999987543 479999999765444447899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.|++......++ ..+.+.|++||++++--
T Consensus 144 ~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 144 RIIVTAAVPEIP--------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp EEEESSBBSS----------HHHHHTEEEEEEEEEEE
T ss_pred EEEEeeccchHH--------HHHHHhcCCCcEEEEEE
Confidence 999998765444 23667789999999853
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.5e-11 Score=103.74 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=96.6
Q ss_pred cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc
Q 023562 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (280)
Q Consensus 134 ~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~ 213 (280)
.+.....|+...+-+.. ..+...++|+|||-|.-.+.+-..+...++|+||++..|+.|+++..+..-....+.-.
T Consensus 98 ~lRnfNNwIKs~LI~~y----~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~ 173 (389)
T KOG1975|consen 98 FLRNFNNWIKSVLINLY----TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFT 173 (389)
T ss_pred ehhhhhHHHHHHHHHHH----hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccce
Confidence 34455567776665433 24567899999999999998888888899999999999999999876531111111234
Q ss_pred eeEEEccCCC------CCCCCCcEEEEEccchhhcC--ChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 214 TNFFCVPLQD------FTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 214 i~~~~~d~~~------~~~~~~~fDlV~~~~~l~~~--~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+.|+.+|-.. +++.+.+||+|-|++++||. +.+...-++++++++|+|||+|+-+
T Consensus 174 a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 174 AVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred eEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 6788887543 22333459999999999985 3345678999999999999999986
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=98.77 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=73.7
Q ss_pred CccEEEeecCccHHHHHHHHhc----CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~----~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
+.+|||+|||+|.++..++++. ..+|+++|+++.+++.|+++.. ++.++++|+..... +++||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------~~~~~~~D~~~~~~-~~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------EATWINADALTTEF-DTLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------CCEEEEcchhcccc-cCCccE
Confidence 5699999999999999887652 2279999999999999998753 37789999887654 369999
Q ss_pred EEccchhhcCCh----------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~----------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|++|--+.-... .-...++.++.+++++|+. ++-
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP 161 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIP 161 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeC
Confidence 999943321111 1235689999997777775 443
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-10 Score=102.08 Aligned_cols=110 Identities=18% Similarity=0.217 Sum_probs=81.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD 232 (280)
.++.+||++|||.|..++.++++. ..+|+.||+++.+++.|++.+...+. .....+++++.+|...+- .+.++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCCC
Confidence 457899999999999999998763 34899999999999999998764321 112457999999975542 2246899
Q ss_pred EEEccchhhcCChhh--HHHHHHHHHHcCCCCcEEEE
Q 023562 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 233 lV~~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii 267 (280)
+|++...-.+.+... -..+++.+.++|+|||+++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 999864332222111 25799999999999999976
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.9e-11 Score=118.22 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=84.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++. ...++||+|+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHHHHHHcCCCcCEEE
Confidence 45799999999999999999877768999999999999999999876541 146899999986642 1136899999
Q ss_pred ccch-hhc------C--ChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWC-IGH------L--TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~-l~~------~--~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+.-- +.. . ...++..++..+.++|+|||.+++.-+
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 8621 110 0 013567889999999999999987644
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=101.54 Aligned_cols=101 Identities=26% Similarity=0.283 Sum_probs=77.2
Q ss_pred cEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccc
Q 023562 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~ 238 (280)
+|||+|||+|.++..++..... +|+++|+|+.+++.|++|+..+++ .++.++..|+.+ .-.++||+|++|-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------~~~~~~~~dlf~--~~~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------VRVLVVQSDLFE--PLRGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------ccEEEEeeeccc--ccCCceeEEEeCC
Confidence 7999999999999999988775 899999999999999999988654 334555555433 2235999999983
Q ss_pred h--hh---cCCh------------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 239 C--IG---HLTD------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 239 ~--l~---~~~~------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
- -. +..+ +....++..+.+.|+|||++++-
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 2 11 1111 13578899999999999998874
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.8e-11 Score=100.01 Aligned_cols=130 Identities=17% Similarity=0.221 Sum_probs=92.6
Q ss_pred HHhhhhcccccccccccCccccccccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeC
Q 023562 109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (280)
Q Consensus 109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~ 188 (280)
+.+.+...+..|+.+..||............+.+.+.+.. ......|.|+|||.+.++. .....|+.+|+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~------r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL 207 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKR------RPKNIVIADFGCGEAKIAS----SERHKVHSFDL 207 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh------CcCceEEEecccchhhhhh----ccccceeeeee
Confidence 3445555455566666665444433444444445555543 2345689999999998765 33446888885
Q ss_pred CHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 189 S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
- ..+-+++.+|+.+.|.++++.|+++++.+|+- .++..|++++.|+|+|||.++|.
T Consensus 208 ~---------------------a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 208 V---------------------AVNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred e---------------------cCCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEE
Confidence 2 24456788999999999999999999888764 37889999999999999999999
Q ss_pred eccC
Q 023562 269 ENIA 272 (280)
Q Consensus 269 e~~~ 272 (280)
|--+
T Consensus 264 Ev~S 267 (325)
T KOG3045|consen 264 EVKS 267 (325)
T ss_pred ehhh
Confidence 8653
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-10 Score=102.10 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=80.1
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV 234 (280)
.+.+||++|||+|..+..++++. ..+++++|+++.+++.+++.+...+. .....+++++..|...+- ...++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence 45699999999999999888765 45899999999999999998754211 011246777877765431 123689999
Q ss_pred EccchhhcCChhh--HHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (280)
++......-+... ...+++.+.+.|+|||++++.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9864422212112 358999999999999999885
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=100.44 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=86.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--C----C
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P----E 227 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~----~ 227 (280)
.++.+|||+|+++|..+..++.... ..|+.+|.++++++.|+++++..|+ ..+++++.+|+.+.- . .
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----~~~I~li~GdA~e~L~~l~~~~~ 191 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----SHKVNVKHGLAAESLKSMIQNGE 191 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhccc
Confidence 3567999999999999998886432 2699999999999999999998766 467999999876531 1 1
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
.++||+|+.-.. ...+..+++.+.++|+|||.|++ ||+...|
T Consensus 192 ~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~-DNvL~~G 233 (278)
T PLN02476 192 GSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVM-DNVLWHG 233 (278)
T ss_pred CCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEE-ecCccCC
Confidence 368999987643 35778899999999999999766 6765444
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-10 Score=93.75 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=86.9
Q ss_pred cEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CC------CCCc
Q 023562 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TP------ETGR 230 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~------~~~~ 230 (280)
+|||||||||..+.+++++.+. ...-.|+++..+...++.+...++.+...+ +..|+.+- +. ..++
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P-----~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPP-----LALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCC-----eEeecCCCCCccccccccCCCC
Confidence 6999999999999999998776 677789998888777777666554333222 23344332 21 2468
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
||+|++.+++|-.++...+.+|+.+.++|+|||.+++.-....+|
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G 147 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDG 147 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCC
Confidence 999999999999999999999999999999999999987666555
|
The function of this family is unknown. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=107.86 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=82.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCC-cceeEEEccCCCCC----CCCCcE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDFT----PETGRY 231 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~----~~~~~f 231 (280)
++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++..+++ . .+++++++|+.++. ...++|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl-----~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKL-----DLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 4579999999999999877766666899999999999999999987654 2 36899999987752 123589
Q ss_pred EEEEccchhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|++.--.---.. ..+..++..+.++|+|||+++...
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99998733110011 245677778899999999998754
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-10 Score=106.22 Aligned_cols=109 Identities=12% Similarity=0.064 Sum_probs=83.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (280)
+.++.+|||+|||+|..+..+++.. ...|+++|+|+.+++.+++++...++ .++.+.+.|...++ ...++|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhhhccC
Confidence 4567899999999999999888764 23799999999999999999887654 35789999988765 334689
Q ss_pred EEEEcc------chhhcCC-------hh-------hHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQ------WCIGHLT-------DD-------DFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~------~~l~~~~-------~~-------d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|.|++. .++.+-+ .. ...+++.++.+.|||||.++++.
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999853 2222211 11 22567999999999999987753
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-10 Score=102.04 Aligned_cols=115 Identities=21% Similarity=0.213 Sum_probs=81.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCC-CCcceeEEEccCCCCC-CCCCcEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPD-MHKATNFFCVPLQDFT-PETGRYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~-~~~~~fD 232 (280)
..+.+||++|||.|..++.+++.. ..+|++||+++.|++.|++...-..+.... ...+++++.+|..++- ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999999888754 348999999999999999732110000000 1467899999987753 3346899
Q ss_pred EEEccchh--h-cCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCI--G-HLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l--~-~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++...- . ....---..+++.+.+.|+|||++++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99987421 1 11111125799999999999999988643
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=105.94 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=82.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~f 231 (280)
..++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...++ .++++.++|+.++.. ..++|
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchhcccC
Confidence 4466799999999999999998764 23799999999999999999887654 348999999887631 12689
Q ss_pred EEEEccc------hhhcCC-------hhh-------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQW------CIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~------~l~~~~-------~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|++.- ++.+-+ +.+ ...+++.+.++|||||.++++.
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 9999642 122211 111 2468999999999999998653
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-10 Score=101.40 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=87.0
Q ss_pred CCccEEEeecCccH----HHHHHHHhcC----C-cEEEEeCCHHHHHHHHHHcCcC-----------------------C
Q 023562 157 QHLVALDCGSGIGR----ITKNLLIRYF----N-EVDLLEPVSHFLDAARESLAPE-----------------------N 204 (280)
Q Consensus 157 ~~~~VLDlGcG~G~----~s~~l~~~~~----~-~v~~vD~S~~~l~~A~~~~~~~-----------------------~ 204 (280)
.+.+|+..||.+|. +++.+.+... . +|+|+|+|+.+|+.|++-.-.. +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999994 3443333211 1 6999999999999998753110 0
Q ss_pred C--CCCCCCcceeEEEccCCCCCC-CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--eccC
Q 023562 205 H--MAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (280)
Q Consensus 205 ~--~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (280)
. ........++|...|+.+.++ ..+.||+|+|.+++.|++++....+++++.+.|+|||++++- |.+.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEsl~ 267 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSENFS 267 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCccccc
Confidence 0 012224678899999987542 247899999999999999888999999999999999999885 6653
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-10 Score=95.81 Aligned_cols=120 Identities=22% Similarity=0.344 Sum_probs=92.4
Q ss_pred hHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcC-C-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCccee
Q 023562 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (280)
Q Consensus 138 ~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~-~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~ 215 (280)
...+|..++. ...+++|||+|.+.|+.+..++..-+ + +++.+|+++++++.|+++++..|+ ...+.
T Consensus 47 ~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~i~ 114 (219)
T COG4122 47 TGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDRIE 114 (219)
T ss_pred HHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cceEE
Confidence 3356666554 34678999999999999999987765 3 799999999999999999998776 45577
Q ss_pred EEE-ccCCCC-C-CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 216 FFC-VPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 216 ~~~-~d~~~~-~-~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
.+. +|..+. . ...++||+|+.-.. +.+...++..+.++|+|||.++ .||+...|
T Consensus 115 ~~~~gdal~~l~~~~~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv-~DNvl~~G 171 (219)
T COG4122 115 LLLGGDALDVLSRLLDGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIV-ADNVLFGG 171 (219)
T ss_pred EEecCcHHHHHHhccCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEE-EeecccCC
Confidence 777 355432 2 23589999987543 4567799999999999999874 57776555
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-10 Score=95.62 Aligned_cols=105 Identities=17% Similarity=0.284 Sum_probs=83.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C-----CCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-----PET 228 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-----~~~ 228 (280)
++.+||||||++|+.+..+++..+. +|+.+|++++..+.|++++...|+ ..+++++.+|..+. + ...
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-HHHHHHHHHHTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEeccHhhHHHHHhccCC
Confidence 5679999999999999999976443 899999999999999999988765 56899999987653 1 113
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++||+|+.-.. ..++..++..+.++|+|||.|++ ||+.
T Consensus 120 ~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~-DN~l 157 (205)
T PF01596_consen 120 GQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIA-DNVL 157 (205)
T ss_dssp TSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEE-ETTT
T ss_pred CceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEE-cccc
Confidence 58999997653 45677899999999999998866 4543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-10 Score=96.07 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=88.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
....++|+|||.|.+.+.+..++...++.+|.|-.|++.++..-.. ......+.+|=+.+++.++++|+|++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp--------~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDP--------SIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCC--------ceEEEEEecchhcccccccchhhhhh
Confidence 3457999999999999999999988999999999999998765322 45677888887878888899999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+..+|+.+ +++..+.+|...|||+|.|+-+
T Consensus 144 SlslHW~N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 144 SLSLHWTN--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhc--cCchHHHHHHHhcCCCccchhH
Confidence 99999988 8889999999999999998753
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.2e-10 Score=93.32 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=78.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++.++..+|+++|.++.+++.+++++...+. .+++++++|+.++. ...++||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchHHHHHhhcCCCceEEE
Confidence 4569999999999999977777777899999999999999999877543 36889999986642 2235799999
Q ss_pred ccchhhcCChhhHHHHHHHHHH--cCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii~e~ 270 (280)
++--+.. .-...+++.+.. +|+|+|++++.-+
T Consensus 127 ~DPPy~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 127 VDPPFRK---GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ECCCCCC---ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 9865321 123455666655 4899998887643
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-10 Score=107.56 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=81.2
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCC-CCCCcceeEEEccCCCCC-CCCCcEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQDFT-PETGRYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~-~~~~~~i~~~~~d~~~~~-~~~~~fD 232 (280)
+++.+|||+|||+|..+..++++.. .+|+++|+++++++.++++..-..+.. .-...+++++.+|..++. ..+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999987644 589999999999999998432111000 001357899999987752 2346899
Q ss_pred EEEccchhhcCChh-h--HHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDD-D--FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~-d--~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++.......+.. . -.++++.+.+.|+|||.+++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 99997543221110 1 146999999999999999874
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.8e-10 Score=99.31 Aligned_cols=103 Identities=19% Similarity=0.204 Sum_probs=84.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+++.|||+|||+|.++...++.|..+|.+||.|.-+ +.|++.+..+++ ...++++.+.++++.++.+++|+|++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~-----~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGL-----EDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCc-----cceEEEeecceEEEecCccceeEEee
Confidence 567999999999999999998898899999977654 999999988776 56799999999988666689999998
Q ss_pred cch---hhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 237 QWC---IGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 237 ~~~---l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
-|. +-| +.-+..++-.=-+.|+|||.++=
T Consensus 134 EWMGy~Ll~--EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 134 EWMGYFLLY--ESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhhhHHHHH--hhhhhhhhhhhhhccCCCceEcc
Confidence 754 322 22456777777899999999863
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=103.28 Aligned_cols=103 Identities=19% Similarity=0.177 Sum_probs=78.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 230 (280)
..++.+|||+|||+|.++..+++.. .+|+++|+|+.|++.|++++...++ .+++|+++|+.+.. ..+++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL------DNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeChHHhhhhhhhhcCC
Confidence 3456799999999999999988775 5799999999999999999876543 36899999986532 23467
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
||+|+++-.-. .....++.+.+ ++|+++++++=|
T Consensus 368 fD~Vi~dPPr~-----g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 368 FDKVLLDPPRA-----GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CCEEEECcCCc-----ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 99999864321 12245565555 699999999833
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=94.01 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=76.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
...++||||+|-|..+..++ ..+.+|++.|.|+.|....+++- . ...+..++...+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~kg-------------~--~vl~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKKG-------------F--TVLDIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhCC-------------C--eEEehhhhhccCCceEEEee
Confidence 45689999999999999886 56778999999999988766541 1 23344445544578999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
-+++.+.. +...+++.+++.|+|+|++++.
T Consensus 158 LNvLDRc~--~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 158 LNVLDRCD--RPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hhhhhccC--CHHHHHHHHHHHhCCCCEEEEE
Confidence 99999988 6669999999999999999984
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=110.52 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=80.6
Q ss_pred CccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCC----------CCCCCcceeEEEccCCCCCC
Q 023562 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHM----------APDMHKATNFFCVPLQDFTP 226 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~----------~~~~~~~i~~~~~d~~~~~~ 226 (280)
+.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++|+..+++. ......+++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999988765 38999999999999999998765331 00112468999999876542
Q ss_pred C-CCcEEEEEccch--h------------hcCC-------------------h---hhHHHHHHHHHHcCCCCcEEEE
Q 023562 227 E-TGRYDVIWVQWC--I------------GHLT-------------------D---DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 227 ~-~~~fDlV~~~~~--l------------~~~~-------------------~---~d~~~~l~~~~r~LkpGG~lii 267 (280)
. ..+||+|++|-- . .|-+ . +-+..++..+.+.|+|||++++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 2 137999998722 1 0100 1 1136788889999999998876
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.7e-10 Score=90.91 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=64.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.+.+|+|+|||||.++...+..++..|.++|+++++++.+++|..+. ..++.|.++|+.++. +++|.+++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------~g~v~f~~~dv~~~~---~~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------LGDVEFVVADVSDFR---GKFDTVIM 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------CCceEEEEcchhhcC---CccceEEE
Confidence 45689999999999999998889889999999999999999998873 467999999999986 67899988
Q ss_pred cc
Q 023562 237 QW 238 (280)
Q Consensus 237 ~~ 238 (280)
|-
T Consensus 115 NP 116 (198)
T COG2263 115 NP 116 (198)
T ss_pred CC
Confidence 73
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=90.68 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=75.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCC---CCCC------------------------
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPEN---HMAP------------------------ 208 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~---~~~~------------------------ 208 (280)
.+..+|||||..|.++..+++.... .|.|+||++..|..|+++++--. ....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4678999999999999999987544 89999999999999999876310 0000
Q ss_pred --CCCccee-------EEEccCCCCCCCCCcEEEEEccch--hhcCC--hhhHHHHHHHHHHcCCCCcEEEE
Q 023562 209 --DMHKATN-------FFCVPLQDFTPETGRYDVIWVQWC--IGHLT--DDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 209 --~~~~~i~-------~~~~d~~~~~~~~~~fDlV~~~~~--l~~~~--~~d~~~~l~~~~r~LkpGG~lii 267 (280)
.+..++. +...|+-+ .....||+|+|-.+ -.|+. |+-+..|++++.++|.|||++++
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccCCcchhcccccEEEecchhhh--hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 0011111 11222221 22358999987632 12444 46789999999999999999987
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=98.08 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=76.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++.++ .+|+++|+|+.|++.|++++...++ .+++|+++|+.++.. ..++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHHhcCCCCeEEE
Confidence 45789999999999999999876 4799999999999999999877543 368999999987642 235799999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++-.-.-+. ..+++.+ ..++|+++++++=|
T Consensus 246 ~dPPr~G~~----~~~~~~l-~~~~~~~ivyvsc~ 275 (315)
T PRK03522 246 VNPPRRGIG----KELCDYL-SQMAPRFILYSSCN 275 (315)
T ss_pred ECCCCCCcc----HHHHHHH-HHcCCCeEEEEECC
Confidence 873311111 1333333 44788999888744
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=92.99 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=89.8
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEE
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~ 217 (280)
.+|..++. ..++.+|||+|+++|+.+..++..... +|+.+|.++...+.|++++...|+ ..+++++
T Consensus 69 ~lL~~l~~-------~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~~~I~~~ 136 (247)
T PLN02589 69 QFLNMLLK-------LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----AHKIDFR 136 (247)
T ss_pred HHHHHHHH-------HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEE
Confidence 45555554 235679999999999999988865332 799999999999999999988766 5689999
Q ss_pred EccCCCCC--C-----CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 218 CVPLQDFT--P-----ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 218 ~~d~~~~~--~-----~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
.++..+.- . ..++||+|+.-.- ...+..++..+.++|+|||.|++ ||+.-.|
T Consensus 137 ~G~a~e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~-DNvl~~G 195 (247)
T PLN02589 137 EGPALPVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY-DNTLWNG 195 (247)
T ss_pred eccHHHHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-cCCCCCC
Confidence 99876541 1 1268999997643 34567888999999999999655 6764333
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=90.50 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=80.0
Q ss_pred cEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C--CCCCcEEEEE
Q 023562 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T--PETGRYDVIW 235 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~fDlV~ 235 (280)
.+||||||.|.+...++...++ .+.|+|++...+..+..++...++ .|+.++++|+..+ . ++++++|-|+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL------KNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT------SSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc------cceEEEEccHHHHHhhcccCCchheEE
Confidence 7999999999999999998887 899999999999999888776544 7899999998873 2 4458999999
Q ss_pred ccchhhcCChhh------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~~~d------~~~~l~~~~r~LkpGG~lii~e 269 (280)
.++.=-+..... -..++..+.++|+|||.|.+..
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 876522211111 2579999999999999999864
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.1e-09 Score=90.23 Aligned_cols=103 Identities=21% Similarity=0.236 Sum_probs=86.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|+|.|.|+|.++.+|+.. +. .+|+.+|+-+..++.|++|++..++ ..++++...|+.+...+ ..||
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv~~~~~~-~~vD 165 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDVREGIDE-EDVD 165 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEeccccccccc-cccC
Confidence 678899999999999999999864 33 2899999999999999999988655 55688899999887666 4899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|+.-. + +.-.++..+.++|+|||.+++.-+
T Consensus 166 av~LDm-----p--~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 166 AVFLDL-----P--DPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred EEEEcC-----C--ChHHHHHHHHHHhCCCcEEEEEcC
Confidence 998643 3 556899999999999999988533
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-09 Score=89.48 Aligned_cols=111 Identities=18% Similarity=0.109 Sum_probs=74.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~ 229 (280)
..++.+|||+|||+|..++.++.. +..+|+..|.++ .++..+.++..++. ....++.+...+..+-. ....
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-S
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccccc
Confidence 346789999999999999988877 455899999999 99999999877542 11355777777765421 2336
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+||+|+.+.++.. +.....+++.+.++|+|+|.+++.-..
T Consensus 119 ~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 119 SFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 8999999999875 357789999999999999987776443
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=81.61 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=94.4
Q ss_pred hHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCccee
Q 023562 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (280)
Q Consensus 138 ~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~ 215 (280)
++.++.+.....+. ...+.-|||+|.|||-++..+++++.. .++++|.|++......+.+.. ++
T Consensus 32 sSs~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~-----------~~ 97 (194)
T COG3963 32 SSSILARKMASVID---PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG-----------VN 97 (194)
T ss_pred CcHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC-----------cc
Confidence 34555555544443 566778999999999999999999876 899999999999999998765 45
Q ss_pred EEEccCCCCC-----CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 216 FFCVPLQDFT-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 216 ~~~~d~~~~~-----~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++.+|..++. ..+..||.|+|.--+..++.....+.++.+...|.+||.++--
T Consensus 98 ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 98 IINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred ccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 7777776654 2345799999998888888777789999999999999988764
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.8e-09 Score=90.18 Aligned_cols=116 Identities=21% Similarity=0.304 Sum_probs=87.7
Q ss_pred CCccEEEeecCccH----HHHHHHHhcC-----C-cEEEEeCCHHHHHHHHHHcCc-----CCCC---------------
Q 023562 157 QHLVALDCGSGIGR----ITKNLLIRYF-----N-EVDLLEPVSHFLDAARESLAP-----ENHM--------------- 206 (280)
Q Consensus 157 ~~~~VLDlGcG~G~----~s~~l~~~~~-----~-~v~~vD~S~~~l~~A~~~~~~-----~~~~--------------- 206 (280)
.+.+|.-+||++|. +++.+.+... . +|+++|+|..+|+.|+.-.-. .++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999993 4444444442 2 899999999999999864322 1100
Q ss_pred ---CCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--eccC
Q 023562 207 ---APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (280)
Q Consensus 207 ---~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (280)
.......|.|...|+.+-.+..+.||+|+|.+|+.|++.+....++++++..|+|||++++- |.+.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~ 246 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIP 246 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccC
Confidence 11113467888888877653447899999999999999888899999999999999999994 6664
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-09 Score=101.90 Aligned_cols=100 Identities=21% Similarity=0.263 Sum_probs=70.9
Q ss_pred ccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
..+||+|||+|.++.+|++++.. ++..-|..+.++..|-++- ....+-...-..+|+++++||+|.|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG-----------vpa~~~~~~s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG-----------VPAMIGVLGSQRLPFPSNAFDMVHC 187 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC-----------cchhhhhhccccccCCccchhhhhc
Confidence 46899999999999999988654 2222345555676665542 1111122234678888899999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+.++......+ ..+|-++.|+|||||+++.+-.
T Consensus 188 src~i~W~~~~-g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 188 SRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccccccchhcc-cceeehhhhhhccCceEEecCC
Confidence 98876544322 3688999999999999999854
|
; GO: 0008168 methyltransferase activity |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-08 Score=87.29 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=92.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC---CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~---~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~ 228 (280)
...+.+||||.||.|+.....++... .+|...|+|+..++..++.++..|+ ...++|.++|+.+.. ...
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----~~i~~f~~~dAfd~~~l~~l~ 207 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----EDIARFEQGDAFDRDSLAALD 207 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----ccceEEEecCCCCHhHhhccC
Confidence 35678999999999999888887755 3899999999999999999999877 455699999987652 112
Q ss_pred CcEEEEEccchhhcCChhhH-HHHHHHHHHcCCCCcEEEEEe
Q 023562 229 GRYDVIWVQWCIGHLTDDDF-VSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~-~~~l~~~~r~LkpGG~lii~e 269 (280)
-..++++++..++.++|.++ ...++-+.+++.|||+++.+-
T Consensus 208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 35799999999999998765 558999999999999999873
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=87.23 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=78.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-----CCCCCc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TPETGR 230 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~ 230 (280)
++..+||+|||+|.++..++...+. .|+++|.|+.+|..|.+|....++ ...+..+..+++.- +...++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-----~g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-----SGRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-----cCceEEEecccccccccccccccCc
Confidence 3457999999999999999866554 899999999999999999887655 34455554444321 233489
Q ss_pred EEEEEccchhhcCChh--------------------------hHHHHHHHHHHcCCCCcEEEEEec
Q 023562 231 YDVIWVQWCIGHLTDD--------------------------DFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~--------------------------d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++++|-- |+..+ .+..++.-+.|+|+|||.+++.-+
T Consensus 223 ~dllvsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 999999833 11111 256678888999999999988644
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=85.36 Aligned_cols=104 Identities=15% Similarity=0.040 Sum_probs=75.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C-C--CCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P--ETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~--~~~~fD 232 (280)
.+.+|||++||+|.++..++.++...|+++|.++.+++.+++++...++ ..+++++++|+.++ . . ....||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHHHHHHHhhccCCCce
Confidence 4578999999999999999999888899999999999999999877544 34678999998553 1 1 112478
Q ss_pred EEEccchhhcCChhhHHHHHHHHH--HcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~--r~LkpGG~lii~ 268 (280)
+|+..--+.. ......+..+. .+|+++|++++-
T Consensus 124 vv~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 124 VIYLDPPFFN---GALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred EEEECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 8887644322 12334555444 468888876653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.9e-09 Score=97.49 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=74.2
Q ss_pred CccEEEeecCccHHHHHHHHhc-----CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~-----~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
+..|+|+|||+|.++...++.+ ..+|.+||-|+.++...++++..++. ..+|+++.+|++++..+ .++|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMREVELP-EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TTTSCHS-S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCcccCCCCC-Ccee
Confidence 4679999999999988776554 34899999999988877766555444 56799999999999876 6999
Q ss_pred EEEccchhhcCCh-hhHHHHHHHHHHcCCCCcEEE
Q 023562 233 VIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 233 lV~~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~li 266 (280)
+|+|-+. ..+.+ +-....+....+.|||||+++
T Consensus 261 IIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9998632 12222 234678889999999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=95.69 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=76.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CCCCCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~ 230 (280)
..++.+|||+|||+|.++..+++.. ..|+++|+|+.|++.|++++..+++ .+++|+.+|+.++ ....++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHHHHHHhcCCC
Confidence 3455799999999999999988664 4799999999999999999876543 4789999998653 122357
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
||+|++.-.-.-+ ...+++.+.+ ++|+++++++=
T Consensus 363 ~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 363 PDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEcC
Confidence 9999975331111 1356666554 88999888873
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-08 Score=93.32 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=77.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++.++ ..|+++|+|+.+++.|+++++..++ .+++|.++|+.++.. ...+||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHHhcCCCCCEEE
Confidence 34689999999999999998765 4799999999999999999877543 378999999876532 124699999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+.---..+. ..+++.+. .++|+++++++=|
T Consensus 306 ~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 306 VNPPRRGIG----KELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ECCCCCCCc----HHHHHHHH-hcCCCeEEEEEeC
Confidence 874422222 24555554 3799999998744
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=88.82 Aligned_cols=75 Identities=16% Similarity=0.078 Sum_probs=61.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++++. +|+++|+++.|++.+++++.. .+++++++|+.+++.++-.+|.|
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---------~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---------DNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---------CceEEEEChhhcCCHHHcCcceE
Confidence 44667999999999999999998876 799999999999999987642 46899999999886542225888
Q ss_pred Eccch
Q 023562 235 WVQWC 239 (280)
Q Consensus 235 ~~~~~ 239 (280)
+++-.
T Consensus 110 v~NlP 114 (272)
T PRK00274 110 VANLP 114 (272)
T ss_pred EEeCC
Confidence 88754
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.7e-08 Score=84.40 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=63.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++++ .+|+++|+++.|++.+++++.. ..+++++++|+.+++.+ +||.|
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~~~~--~~d~V 95 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKVDLP--EFNKV 95 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccCCch--hceEE
Confidence 3456799999999999999999885 4699999999999999988754 24689999999887654 58999
Q ss_pred Eccchhh
Q 023562 235 WVQWCIG 241 (280)
Q Consensus 235 ~~~~~l~ 241 (280)
+++...+
T Consensus 96 v~NlPy~ 102 (258)
T PRK14896 96 VSNLPYQ 102 (258)
T ss_pred EEcCCcc
Confidence 9986643
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=86.28 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=84.2
Q ss_pred ccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCCCcEEEE
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVI 234 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fDlV 234 (280)
..+||||||.|.+...++++.++ .+.|||+....+..|.+.+...++ .|+.+++.|+..+- +++++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 47999999999999999999887 899999999999999998887643 28999999987652 444699999
Q ss_pred EccchhhcCChh------hHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+.++.=-+.... -...+++.+.+.|+|||.|.+.
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 988652221110 1257999999999999999986
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-08 Score=87.64 Aligned_cols=103 Identities=20% Similarity=0.199 Sum_probs=81.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.+..|||+|||.|.++...++.|..+|.+|+.| +|.+.|+..++.+++ ..++.++.+-++++.++ ++.|+|++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~-----~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL-----ADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc-----cceEEEccCccccccCc-hhccEEEe
Confidence 456899999999999998888899999999964 699999999988765 67899999999998876 79999998
Q ss_pred cc-hhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 237 QW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 237 ~~-~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
-- ...-+. +...+-.-.+++.|+|.|..+=
T Consensus 250 EPMG~mL~N-ERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 250 EPMGYMLVN-ERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred ccchhhhhh-HHHHHHHHHHHhhcCCCCcccC
Confidence 62 222223 2334444456699999998764
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.7e-08 Score=85.41 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=60.2
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHH-HHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~-A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..+++++..+|+++|+++.|+.. .+++..-..+ ...|++ ..+.+++..+-..+|+++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~----~~~ni~--~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL----ERTNIR--YVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe----ecCCcc--cCCHhHcCCCceeeeEEE
Confidence 566899999999999999999887789999999988876 3332110000 001222 122222222224788777
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
++.+ ..+..+.+.|+| |.+++
T Consensus 149 iS~~----------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 149 ISLI----------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred eehH----------hHHHHHHHHhCc-CeEEE
Confidence 7655 246678888888 66554
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=90.71 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=88.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD 232 (280)
++.+|||+=|=||.++.+.+..|..+|+.||.|...|+.|++|++-+++. ...+.|+++|+.++- -...+||
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhcCCccc
Confidence 37899999999999999988888878999999999999999999987652 355789999987652 2234999
Q ss_pred EEEcc-chhhcCC------hhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQ-WCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~-~~l~~~~------~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|++- -.+..=+ ..++..++..+.++|+|||.++++-|-
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 99964 1111100 136788999999999999999998664
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-07 Score=74.63 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=68.3
Q ss_pred CCccEEEeecCccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEE
Q 023562 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~-~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV 234 (280)
++.+|||+|||+|. ++..|.+.+. .|+++|+++..++.++++. +++..+|+.+-.++ -..+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~-------------~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG-------------LNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC-------------CeEEECcCCCCCHHHHhcCCEE
Confidence 45789999999996 8888887776 5999999999999987763 56788998775533 2578999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPG 262 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpG 262 (280)
++... +.+++..+.++++.+.-.
T Consensus 82 ysirp-----p~el~~~~~~la~~~~~~ 104 (134)
T PRK04148 82 YSIRP-----PRDLQPFILELAKKINVP 104 (134)
T ss_pred EEeCC-----CHHHHHHHHHHHHHcCCC
Confidence 98765 468888888888865443
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.6e-08 Score=88.67 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=59.2
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcC-CCCCCCCCcceeEEE-ccCCCCC----CCCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFC-VPLQDFT----PETG 229 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~-~~~~~~~~~~i~~~~-~d~~~~~----~~~~ 229 (280)
...+|||||||+|.+...++.+.+. +++++|+++.+++.|++++..+ ++ ..++++.. .+..++. .+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----NGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----cCcEEEEEccchhhhhhcccccCC
Confidence 5679999999999888877766433 7999999999999999999876 44 34566653 3333221 2346
Q ss_pred cEEEEEccchhh
Q 023562 230 RYDVIWVQWCIG 241 (280)
Q Consensus 230 ~fDlV~~~~~l~ 241 (280)
+||+|+|+--++
T Consensus 189 ~fDlivcNPPf~ 200 (321)
T PRK11727 189 RFDATLCNPPFH 200 (321)
T ss_pred ceEEEEeCCCCc
Confidence 899999996544
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.8e-08 Score=86.42 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=79.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
-.+.+|||+|||+|..+-.+.+.. ..+++++|.|+.|++.++..+..... .....+......+.. +..+.|+
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~-~~~~~DL 105 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-----NRNAEWRRVLYRDFL-PFPPDDL 105 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-----cccchhhhhhhcccc-cCCCCcE
Confidence 356799999999998766554432 33899999999999999987765311 011111111111111 1123499
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCCCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGSE 277 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~~~ 277 (280)
|+++++|..+++.....+++.+.+.+.+ .+++.|+-+..||.
T Consensus 106 vi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~ 147 (274)
T PF09243_consen 106 VIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFR 147 (274)
T ss_pred EEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHH
Confidence 9999999999987778899999888776 99999998877763
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.4e-08 Score=84.91 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=78.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-C-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC---CCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~ 229 (280)
..++.+|||.|.|+|.++..|++... . +|..+|+.+..++.|+++++..++ ..++++.+.|+..-.+ ...
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-GGCG--STT-TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEecceecccccccccC
Confidence 67889999999999999999987533 2 899999999999999999998766 5689999999964222 126
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcC-CCCcEEEEEecc
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLKENI 271 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~L-kpGG~lii~e~~ 271 (280)
.+|.|+.-. + +.-.++..+.++| ||||+|++--+|
T Consensus 113 ~~DavfLDl-----p--~Pw~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 113 DFDAVFLDL-----P--DPWEAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp SEEEEEEES-----S--SGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred cccEEEEeC-----C--CHHHHHHHHHHHHhcCCceEEEECCC
Confidence 899998643 3 3337888899999 899999885443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-08 Score=88.51 Aligned_cols=109 Identities=19% Similarity=0.233 Sum_probs=80.0
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV 234 (280)
.+.+||.+|+|.|..++.+++.. ..+|+.||+++.+++.|++.+....-. -...+++++.+|...+- ...++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--FCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--ccCCceEEEEChhHHHHhhCCCCccEE
Confidence 56799999999999999888753 458999999999999999988642110 11467899999887753 234689999
Q ss_pred Eccchhhc---CChhh--HHHHHH-HHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGH---LTDDD--FVSFFK-RAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~---~~~~d--~~~~l~-~~~r~LkpGG~lii~ 268 (280)
++-.. .. -+... -..|++ .+.+.|+|||++++-
T Consensus 181 i~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 97621 11 00001 146888 899999999998763
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=83.05 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=61.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE--
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD-- 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD-- 232 (280)
..++.+|||+|||+|.++..+++++. .|+++|+++.|++.+++++.. ..+++++.+|+..++.+ +||
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhcCChh--HcCCc
Confidence 44567999999999999999998875 599999999999999988753 25688999999887654 566
Q ss_pred -EEEccchh
Q 023562 233 -VIWVQWCI 240 (280)
Q Consensus 233 -lV~~~~~l 240 (280)
+|+++..+
T Consensus 96 ~~vvsNlPy 104 (253)
T TIGR00755 96 LKVVSNLPY 104 (253)
T ss_pred ceEEEcCCh
Confidence 77776553
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-08 Score=92.65 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=96.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++..++|+|||.|.....+..-....+++++.++..+..+.......++ .....+..+|+..-+++++.||.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l-----~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYL-----DNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHh-----hhhcceehhhhhcCCCCccccCcE
Confidence 345568999999999999988877767899999999999988877665443 345566778888888888999999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
.+..+..|.+ +...++++++++++|||+++..|++....
T Consensus 183 ~~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 183 RFLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred EEEeecccCC--cHHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 9999999999 77799999999999999999999986543
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.6e-08 Score=86.51 Aligned_cols=110 Identities=21% Similarity=0.257 Sum_probs=80.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fDl 233 (280)
++.+|||+=|=||.++...+..|..+|+.||.|..+++.+++++..+++. ..+++|++.|+.++- -..++||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----LDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----CTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHHHhcCCCCCE
Confidence 45799999999999999888777778999999999999999999887651 246889999986531 12369999
Q ss_pred EEcc---chhhcCC-hhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWVQ---WCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~~---~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|++- +.=..+. ..++..++..+.++|+|||.+++.-|
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 9964 1100000 13678899999999999999887655
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=84.85 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=63.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+. +|+++|+++.|++.+++++...+. ..+++++.+|+..... .+||.|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~-----~~~v~ii~~Dal~~~~--~~~d~V 105 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPL-----ASKLEVIEGDALKTEF--PYFDVC 105 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECCHhhhcc--cccCEE
Confidence 44667999999999999999988754 699999999999999998865322 3578999999977654 368999
Q ss_pred Eccchh
Q 023562 235 WVQWCI 240 (280)
Q Consensus 235 ~~~~~l 240 (280)
+++...
T Consensus 106 vaNlPY 111 (294)
T PTZ00338 106 VANVPY 111 (294)
T ss_pred EecCCc
Confidence 887543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=77.44 Aligned_cols=111 Identities=22% Similarity=0.187 Sum_probs=79.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-c---------EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-E---------VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~---------v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 224 (280)
..++..|||--||+|.+.+..+..+.. . +.|+|+++.+++.|++|+...++ ...+.+.+.|+.++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----EDYIDFIQWDAREL 100 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGGG
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----CCceEEEecchhhc
Confidence 446679999999999998877655443 3 78999999999999999987655 45689999999999
Q ss_pred CCCCCcEEEEEccchhhc-CCh-----hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 225 TPETGRYDVIWVQWCIGH-LTD-----DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 225 ~~~~~~fDlV~~~~~l~~-~~~-----~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+..++++|+|+++--+.. +.. .-+..+++++.++|++...+++.++
T Consensus 101 ~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~ 152 (179)
T PF01170_consen 101 PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN 152 (179)
T ss_dssp GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC
T ss_pred ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 855589999999844332 121 1236788999999999666666654
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-08 Score=77.44 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=66.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
-.+++++|+|||.|.++....-.....|.|+|+.+++++.++.|..+. ..++++.++|+.++.+..+.||.++
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf-------EvqidlLqcdildle~~~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF-------EVQIDLLQCDILDLELKGGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh-------hhhhheeeeeccchhccCCeEeeEE
Confidence 357899999999999997776566669999999999999999998764 5678999999999877778999999
Q ss_pred ccchh
Q 023562 236 VQWCI 240 (280)
Q Consensus 236 ~~~~l 240 (280)
.+--+
T Consensus 120 iNppF 124 (185)
T KOG3420|consen 120 INPPF 124 (185)
T ss_pred ecCCC
Confidence 88554
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-07 Score=82.73 Aligned_cols=109 Identities=19% Similarity=0.261 Sum_probs=83.3
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV 234 (280)
.+.+||-+|.|.|..++.++++. ..+++.||+++..++.+++.+........ ..+++.+..|...+-. ...+||+|
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEeccHHHHHHhCCCcCCEE
Confidence 34699999999999999999875 34999999999999999999887432111 4778888888877632 22489999
Q ss_pred EccchhhcCCh-hhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTD-DDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~-~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
++-..=. ..+ +.+ ..|++.++++|+|+|+++.-
T Consensus 154 i~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 154 IVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9764322 121 111 58999999999999999876
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.61 E-value=4e-08 Score=81.73 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=75.2
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C-C--CCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P--ETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~--~~~~fD 232 (280)
.+.+|||+-||+|.++...+.+|...|+.||.|+..+...+++++..+. ..++..++.|...+ . . ...+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHHHHHHhhcccCCCce
Confidence 4679999999999999999999999999999999999999999987544 34578888875432 1 1 347999
Q ss_pred EEEccchhhcCChhh-HHHHHHHHH--HcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDD-FVSFFKRAK--VGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d-~~~~l~~~~--r~LkpGG~lii~ 268 (280)
+|++.--... .. +..++..+. .+|+++|++++-
T Consensus 117 iIflDPPY~~---~~~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 117 IIFLDPPYAK---GLYYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp EEEE--STTS---CHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred EEEECCCccc---chHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 9998744332 12 367888877 789999987663
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-07 Score=82.04 Aligned_cols=101 Identities=17% Similarity=0.095 Sum_probs=75.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+||=+|.|-|..++.++++- .+|+.||+++.+++.+++.++...- .-..++++++.. +.+ ...++||+|
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~-~~~--~~~~~fDVI 143 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ-LLD--LDIKKYDLI 143 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh-hhh--ccCCcCCEE
Confidence 4567899999999999999999764 4899999999999999997765221 111345555541 211 113689999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++-..+ + ..+++.++++|+|||+++..
T Consensus 144 IvDs~~---~----~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 144 ICLQEP---D----IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEcCCC---C----hHHHHHHHHhcCCCcEEEEC
Confidence 976431 1 37999999999999999874
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.5e-07 Score=82.08 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=84.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fDl 233 (280)
..++..|||==||||.+.+...-.|. ++.|.|++..|++-|+.|++..++ ....+... |++.+++...++|.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i------~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI------EDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc------CceeEEEecccccCCCCCCccce
Confidence 56778999999999999887765565 599999999999999999987543 23334445 99999987677999
Q ss_pred EEccchhhcCC-------hhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~~~~l~~~~-------~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|++---...-+ ++-+..+++.+.++|++||+++|.-+
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99753221111 12257899999999999999999755
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-07 Score=80.04 Aligned_cols=110 Identities=16% Similarity=0.076 Sum_probs=85.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD 232 (280)
++.+.+|||.+.|-|+.++..++++..+|.-++.++..|+.|+-|--..++ +...++++.+|..+. .+.+.+||
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l----~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL----FEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc----cccccEEecccHHHHHhcCCccccc
Confidence 456889999999999999999999998899999999999988766433322 234689999998775 36678999
Q ss_pred EEEcc-chhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~-~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|+-- -=|.+.+.---..|.++++|+|||||.++..
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 99843 1223333212368999999999999998875
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.6e-07 Score=86.76 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=77.5
Q ss_pred CccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
..+|||++||+|..+..++... ...|+++|+++.+++.++++++.+++ .++.+.+.|+..+.....+||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhHHHHHhhcCCCCEEEE
Confidence 3589999999999999987653 34799999999999999999877654 2456888888664321357999998
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.- + . ....++..+.+.+++||+++++
T Consensus 132 DP-~---G--s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DP-F---G--SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CC-C---C--CcHHHHHHHHHHhcCCCEEEEE
Confidence 63 2 2 2236888878889999999998
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.55 E-value=9e-08 Score=83.34 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=78.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCC-cEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETG-RYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~-~fD 232 (280)
.++.+||-+|.|.|..+..+++.. ..+|+.||+++.+++.|++.+...... ....+++++..|...+- ...+ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCccc
Confidence 367899999999999999988654 348999999999999999987642110 11457889999876652 2224 899
Q ss_pred EEEccchhhcCChhh--HHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|++-..-...+... -..+++.+++.|+|||++++-.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999643211111111 1589999999999999998853
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-07 Score=78.67 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=72.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++..|+|+-||.|.++..++..+ ...|.++|++|.+++..++++..+++ ...+..+++|..++.. .+.||-|
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES-GGG----TT-EEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcCCHHHhcC-ccccCEE
Confidence 467899999999999999998733 34799999999999999999988765 4568899999988865 5899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
+++..- ....|+..+.+++++||++-
T Consensus 174 im~lp~------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPE------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TS------SGGGGHHHHHHHEEEEEEEE
T ss_pred EECChH------HHHHHHHHHHHHhcCCcEEE
Confidence 987541 11268888999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.6e-07 Score=74.38 Aligned_cols=96 Identities=22% Similarity=0.232 Sum_probs=77.3
Q ss_pred cEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccc
Q 023562 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~ 238 (280)
+++|+|+|.|.-++.++-..++ +++.+|.+.+=+...+......++ .|+++++..+++ .....+||+|++.-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEeeecc-cccCCCccEEEeeh
Confidence 7999999999999988877776 799999999988888877766554 579999999888 33347999999987
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+- .+..++.-+...+++||.+++.
T Consensus 124 v~------~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 124 VA------PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp SS------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred hc------CHHHHHHHHHHhcCCCCEEEEE
Confidence 63 4568999999999999988875
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.1e-07 Score=84.19 Aligned_cols=98 Identities=17% Similarity=0.100 Sum_probs=70.5
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-----------
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----------- 227 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----------- 227 (280)
.+|||++||+|.++..+++. ...|+++|+|+.|++.|++++..+++ .+++|+.+|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 47999999999999977755 45799999999999999999877643 3688999998764210
Q ss_pred -----CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 228 -----~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
...||+|+..-- .-. -...+++.+.+ |+++++++=|
T Consensus 272 ~~~~~~~~~d~v~lDPP--R~G--~~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPP--RAG--LDPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred ccccccCCCCEEEECCC--CCC--CcHHHHHHHHc---CCcEEEEEcC
Confidence 013788887533 111 12355555544 7888888733
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-07 Score=84.60 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=70.6
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CC---------
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE--------- 227 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~--------- 227 (280)
.+|||++||+|.++..+++. ..+|+++|+|+.+++.|++++..+++ .+++|+.+|+.++- ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHhhcccccccc
Confidence 47999999999999977754 55799999999999999999877543 37899999986641 10
Q ss_pred -----CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 -----~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
..+||+|+..--- .. -...+++.+.+ |+++++++=
T Consensus 281 ~~~~~~~~~D~v~lDPPR--~G--~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPR--AG--LDDETLKLVQA---YERILYISC 320 (362)
T ss_pred cccccCCCCCEEEECCCC--CC--CcHHHHHHHHc---cCCEEEEEe
Confidence 1258999876331 11 12355555554 688888873
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-07 Score=82.06 Aligned_cols=117 Identities=18% Similarity=0.282 Sum_probs=77.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCC-------------CCCCC---------Ccc
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-------------MAPDM---------HKA 213 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~-------------~~~~~---------~~~ 213 (280)
.++.++||||||+-..-..-+...+.+|+..|+++..++..++.+...+- ..... +..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35679999999996554433445667999999999999988887765321 00000 111
Q ss_pred e-eEEEccCCCCCC-C-----CCcEEEEEccchhhcCCh--hhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 214 T-NFFCVPLQDFTP-E-----TGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 214 i-~~~~~d~~~~~~-~-----~~~fDlV~~~~~l~~~~~--~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+ .++.+|+...++ . +.+||+|++.++++.+.. +++...++++.++|||||.|++..-+.
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 2 366778876542 2 135999999999987754 677899999999999999999976543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.1e-07 Score=86.49 Aligned_cols=107 Identities=16% Similarity=0.051 Sum_probs=81.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDl 233 (280)
....+||||||.|.++..++...++ .+.|+|++...+..+..+....++ .|+.+++.|+..+. ++++++|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHHHHHhcCcccccE
Confidence 3557999999999999999998887 899999999999888777655443 46777777764332 44578999
Q ss_pred EEccchhhcCChh----h--HHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDD----D--FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~----d--~~~~l~~~~r~LkpGG~lii~e 269 (280)
|++++.=-+.... . -..+++.+.+.|+|||.|.+..
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 9987653221110 1 2579999999999999998863
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-06 Score=83.22 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=81.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (280)
+.++.+|||++||+|.-+..+++.... .|+++|+++.-++..++++...|+ .++.+...|...+. ..++.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhhhhhhchhhc
Confidence 457789999999999999999887432 799999999999999999988654 45777777876653 223679
Q ss_pred EEEE----cc--chhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIW----VQ--WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~----~~--~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~ 268 (280)
|.|+ |+ .++..-++ .+ ...+|..+.++|||||+++.+
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999 44 33333221 11 267899999999999998654
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.7e-07 Score=77.94 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=81.2
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCc---CC-------------------------C--
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP---EN-------------------------H-- 205 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~---~~-------------------------~-- 205 (280)
..+.+||--|||.|+++..++.+|+. +.+.|.|--|+=..+-.+.. .+ +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34579999999999999999999885 99999999997655442221 00 0
Q ss_pred ----CCCCCCcceeEEEccCCCCCCCC---CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 206 ----MAPDMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 206 ----~~~~~~~~i~~~~~d~~~~~~~~---~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
.......+.....+|+.++-.++ ++||+|++++.+.-.. ++...|+.+.++|||||+.+=
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~--Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE--NIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH--HHHHHHHHHHHHhccCCEEEe
Confidence 00111345667777877765443 7999999998887655 888999999999999997653
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.4e-06 Score=74.19 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=80.4
Q ss_pred CCccEEEeecCccHHHHHHHHhc-----CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CC-
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TP- 226 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-----~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~- 226 (280)
++..++|+|||.|.-+..|++.. ...++.+|+|..+|+.+.+++....+ ....+.-+++|..+. +.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~----p~l~v~~l~gdy~~~l~~l~~~ 151 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF----SHVRCAGLLGTYDDGLAWLKRP 151 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC----CCeEEEEEEecHHHHHhhcccc
Confidence 45689999999999888777653 22699999999999999998872211 123344477777552 21
Q ss_pred -CCCcEEEEEcc-chhhcCChhhHHHHHHHHHH-cCCCCcEEEEE
Q 023562 227 -ETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLK 268 (280)
Q Consensus 227 -~~~~fDlV~~~-~~l~~~~~~d~~~~l~~~~r-~LkpGG~lii~ 268 (280)
......+++.- .+|..+++++...+++++++ .|+|||.|++.
T Consensus 152 ~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 152 ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 11234666554 68999999999999999999 99999999885
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.5e-06 Score=64.91 Aligned_cols=101 Identities=22% Similarity=0.231 Sum_probs=71.4
Q ss_pred EEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc-eeEEEccCCC--CCCCC-CcEEEE
Q 023562 161 ALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCVPLQD--FTPET-GRYDVI 234 (280)
Q Consensus 161 VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~-i~~~~~d~~~--~~~~~-~~fDlV 234 (280)
++|+|||+|... .+..... ..++++|+++.++..++...... ... +.+...+... ++... ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA-------GLGLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc-------CCCceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999976 3333322 25888999999999865544221 111 5777777765 55554 489999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.+....++.. ....+..+.+.|+|+|.+++.+...
T Consensus 124 ~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 124 ISLLVLHLLP---PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeeehhcCC---HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 4334444433 6689999999999999999987764
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=79.42 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=91.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
..+.+|+|.=||.|.+++.++..+...|+++|+||.+++..++++..+++ ...+..+++|..+.....+.+|-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----EGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----cceeeEEeccHHHhhhccccCCEEE
Confidence 35789999999999999999988776799999999999999999998766 3448899999988875557899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
+...- ....++..+.+.+++||++-+.+++..+.
T Consensus 262 m~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 262 MGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred eCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 88652 33478888999999999999999886543
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.2e-06 Score=70.21 Aligned_cols=114 Identities=21% Similarity=0.290 Sum_probs=87.0
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEE
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~ 217 (280)
.++..++.. -.+.++||+|.=||+-+..++...+. +|+++|+++...+.+.+..+..+. ...++++
T Consensus 63 ~fl~~li~~-------~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~i 130 (237)
T KOG1663|consen 63 QFLQMLIRL-------LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITFI 130 (237)
T ss_pred HHHHHHHHH-------hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeeee
Confidence 455555542 25679999999999998888876555 899999999999999888877655 6789999
Q ss_pred EccCCCC------CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 218 CVPLQDF------TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 218 ~~d~~~~------~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.++..+. ..+.++||+++.-.- .+.....+.++.+++|+||+|++ +|+
T Consensus 131 ~g~a~esLd~l~~~~~~~tfDfaFvDad-----K~nY~~y~e~~l~Llr~GGvi~~-DNv 184 (237)
T KOG1663|consen 131 EGPALESLDELLADGESGTFDFAFVDAD-----KDNYSNYYERLLRLLRVGGVIVV-DNV 184 (237)
T ss_pred ecchhhhHHHHHhcCCCCceeEEEEccc-----hHHHHHHHHHHHhhcccccEEEE-ecc
Confidence 9876542 134579999986422 23556899999999999999865 554
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.2e-06 Score=70.90 Aligned_cols=97 Identities=25% Similarity=0.268 Sum_probs=77.5
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+.+++|||+|.|.-+..++-..++ +|+.+|...+=+.+.+....+.++ .|++++++.++++......||+|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------ENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------CCeEEehhhHhhcccccccCcEEEe
Confidence 579999999999999987744444 799999999988888877776654 5799999999998744211999998
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
.-+- .+..+..-+...+++||.++
T Consensus 142 RAva------~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 142 RAVA------SLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ehcc------chHHHHHHHHHhcccCCcch
Confidence 8652 55678888999999988864
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-06 Score=71.98 Aligned_cols=105 Identities=19% Similarity=0.185 Sum_probs=76.9
Q ss_pred CCCccEEEeecCccHHHHHHHHh-cCC--cEEEEeCCHHHHHHHHHHcCcCCC----CCCCCCcceeEEEccCCCCCCCC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIR-YFN--EVDLLEPVSHFLDAARESLAPENH----MAPDMHKATNFFCVPLQDFTPET 228 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~-~~~--~v~~vD~S~~~l~~A~~~~~~~~~----~~~~~~~~i~~~~~d~~~~~~~~ 228 (280)
.++.+.||+|.|+|+++..++.. +.. ..+|||.-++.++.+++++...-- ...-...+..++.+|......+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 46789999999999999877644 222 349999999999999998865310 00001245778888887776666
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+||.|++--. ....-+++...|+|||.+++-
T Consensus 161 a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 89999998733 225667788889999988874
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-06 Score=69.49 Aligned_cols=103 Identities=17% Similarity=0.064 Sum_probs=76.8
Q ss_pred CccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
+.-++|+|||+|..+..|++.... .+.++|+|+.+++..++.+..+ ..+++.++.|+.+--.+ ++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-------~~~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-------RVHIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-------CCccceeehhHHhhhcc-CCccEEE
Confidence 567999999999999988776332 6889999999999988887765 45678888888664333 7999998
Q ss_pred ccchhhcCCh-------------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLTD-------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~-------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+--.---++ +-...++..+..+|.|.|++++.
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 7632111111 11467888888999999999885
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.2e-06 Score=69.86 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=79.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCC-CCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPE-TGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~-~~~fDl 233 (280)
.+.++||+=+|+|.++...+.+|...++.||.+...+...++|+...+. ..+..++..|...+ ... .++||+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----EGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----ccceEEEeecHHHHHHhcCCCCcccE
Confidence 5689999999999999999999999999999999999999999877543 45677888887754 122 235999
Q ss_pred EEccchhhcCChhhHHHHHHH--HHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKR--AKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~--~~r~LkpGG~lii~ 268 (280)
|+.---++. .--+....+.. -..+|+|+|.+++-
T Consensus 118 VflDPPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 118 VFLDPPYAK-GLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred EEeCCCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 998755441 10111223333 45789999999885
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-06 Score=79.40 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=79.7
Q ss_pred CccEEEeecCccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~--~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV 234 (280)
+.+|||+.||+|..+..++.+ +...|+++|+|+.+++.+++|++.++. .++.+.+.|+..+-. ...+||+|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRYRNRKFHVI 118 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHHhCCCCCEE
Confidence 358999999999999999987 567899999999999999999977543 257788888876531 12579999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
...- +. ....++..+.+.+++||+++++
T Consensus 119 dlDP-fG-----s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDP-FG-----TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCC-CC-----CcHHHHHHHHHhcccCCEEEEE
Confidence 8854 32 2237999999999999999998
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.5e-06 Score=68.98 Aligned_cols=100 Identities=15% Similarity=0.069 Sum_probs=80.1
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~ 238 (280)
..+.|+|+|+|.++. ++.+...+|.+++.+|.-.++|++++.-.| ..+++++.+|+.++.+ ...|+|+|-.
T Consensus 34 d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g------~~n~evv~gDA~~y~f--e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHVPG------DVNWEVVVGDARDYDF--ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCCCC------CcceEEEecccccccc--cccceeHHHH
Confidence 578999999999998 666778899999999999999999976544 3789999999999887 3689999864
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
.=--+-++....+++.+...||-++.++=
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 31122234567889999999999998764
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.8e-06 Score=74.76 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=60.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCC--
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PET-- 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~-- 228 (280)
+.++..++|++||.|..+..+++... ..|+|+|.++.|++.|++++.. ..++.++++++.++. .+.
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHHHHHHcCC
Confidence 45667999999999999999998864 3799999999999999988753 246899999988763 211
Q ss_pred CcEEEEEcc
Q 023562 229 GRYDVIWVQ 237 (280)
Q Consensus 229 ~~fDlV~~~ 237 (280)
.+||.|++.
T Consensus 89 ~~vDgIl~D 97 (296)
T PRK00050 89 GKVDGILLD 97 (296)
T ss_pred CccCEEEEC
Confidence 279999865
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=80.55 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=77.9
Q ss_pred CCccEEEeecCccHHHHHHHHhc-------------------------------------------CCcEEEEeCCHHHH
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSHFL 193 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-------------------------------------------~~~v~~vD~S~~~l 193 (280)
++..++|-+||+|.+.+..+... ...++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 45789999999999987765420 01589999999999
Q ss_pred HHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC--CCcEEEEEccchhh-cC-ChhhHHHHHHHHHHcCC---CCcEEE
Q 023562 194 DAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIG-HL-TDDDFVSFFKRAKVGLK---PGGFFV 266 (280)
Q Consensus 194 ~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fDlV~~~~~l~-~~-~~~d~~~~l~~~~r~Lk---pGG~li 266 (280)
+.|++|+...|+ ...++|.++|+.+++.. .++||+|+++--+. .+ ...++..+++.+.+.++ +|+.++
T Consensus 270 ~~A~~N~~~~g~-----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 270 QAARKNARRAGV-----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred HHHHHHHHHcCC-----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 999999988765 45689999999887543 25799999994322 22 22455666666666555 888776
Q ss_pred EE
Q 023562 267 LK 268 (280)
Q Consensus 267 i~ 268 (280)
+.
T Consensus 345 ll 346 (702)
T PRK11783 345 LF 346 (702)
T ss_pred EE
Confidence 54
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.6e-06 Score=74.20 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=76.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.+..++|+|||.|-... ..-...+.+.|++...+..++..-. .....+|+..++..+.+||.+++
T Consensus 45 ~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~~------------~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSGG------------DNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCCC------------ceeehhhhhcCCCCCCccccchh
Confidence 36689999999996543 1122269999999999887765422 14677898888888899999999
Q ss_pred cchhhcCChhhH-HHHHHHHHHcCCCCcEEEEE
Q 023562 237 QWCIGHLTDDDF-VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 237 ~~~l~~~~~~d~-~~~l~~~~r~LkpGG~lii~ 268 (280)
..++||+..... ..+++++.+.|+|||...+.
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999987544 67999999999999987765
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.8e-06 Score=70.80 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=63.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCC-cEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~fDl 233 (280)
..++..|||||+|.|.+|..|++++.. |+++|+++.+++..++.... ..+++.+.+|+-.++++.- .++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~~--------~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFAP--------YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhccc--------ccceEEEeCchhcCcchhhcCCCE
Confidence 445779999999999999999988775 99999999999999998764 4679999999988876522 5788
Q ss_pred EEccch
Q 023562 234 IWVQWC 239 (280)
Q Consensus 234 V~~~~~ 239 (280)
|+++--
T Consensus 99 vVaNlP 104 (259)
T COG0030 99 VVANLP 104 (259)
T ss_pred EEEcCC
Confidence 887744
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-05 Score=75.16 Aligned_cols=104 Identities=23% Similarity=0.216 Sum_probs=76.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC---CCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~f 231 (280)
..++.+|||+=||.|.++..++.+ ..+|+|+|+++.+++.|+++++.+++ .|+.|..++.+++... ...+
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGI------DNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHHhhhccccCCC
Confidence 345678999999999999999855 45799999999999999999998765 4699999999887533 2478
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|.|+..--=.-+. ..+++.+.+ ++|-.+++++=|
T Consensus 364 d~VvvDPPR~G~~----~~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 364 DVVVVDPPRAGAD----REVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred CEEEECCCCCCCC----HHHHHHHHh-cCCCcEEEEeCC
Confidence 9998752211111 144444443 467777777633
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.2e-05 Score=75.79 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=51.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcC---------CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC---
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--- 224 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~---------~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--- 224 (280)
...+|||.|||+|.+...++.+.. .+++++|+++..++.++.++...+. ..+++.+.|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~~~~ 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSYVLL 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeeccccccccc
Confidence 446899999999999998876532 2689999999999999988765321 1223333332211
Q ss_pred --CCCCCcEEEEEcc
Q 023562 225 --TPETGRYDVIWVQ 237 (280)
Q Consensus 225 --~~~~~~fDlV~~~ 237 (280)
....+.||+|+.+
T Consensus 105 ~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 105 NIESYLDLFDIVITN 119 (524)
T ss_pred ccccccCcccEEEeC
Confidence 1112589999988
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.7e-05 Score=68.59 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=62.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.+++..|||+|.|||.++..+++.+.. |.++|+++.|+....++...... .....++.+|+-..+.+ .||.+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~kk-VvA~E~Dprmvael~krv~gtp~-----~~kLqV~~gD~lK~d~P--~fd~c 127 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGKK-VVAVEIDPRMVAELEKRVQGTPK-----SGKLQVLHGDFLKTDLP--RFDGC 127 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCe-EEEEecCcHHHHHHHHHhcCCCc-----cceeeEEecccccCCCc--cccee
Confidence 567789999999999999999988775 99999999999999999876422 35688899998766543 78999
Q ss_pred Ecc
Q 023562 235 WVQ 237 (280)
Q Consensus 235 ~~~ 237 (280)
+++
T Consensus 128 VsN 130 (315)
T KOG0820|consen 128 VSN 130 (315)
T ss_pred ecc
Confidence 975
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-06 Score=69.66 Aligned_cols=72 Identities=18% Similarity=0.345 Sum_probs=53.1
Q ss_pred cEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--CCCc-EEEEEc
Q 023562 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGR-YDVIWV 236 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~-fDlV~~ 236 (280)
.|+|+.||.|..++.+++. +.+|+++|+++..++.|+.++.-.|. ..+++|+++|+.++.. .... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 5899999999999999966 55799999999999999999987654 5789999999876531 1112 899995
Q ss_pred c
Q 023562 237 Q 237 (280)
Q Consensus 237 ~ 237 (280)
+
T Consensus 76 S 76 (163)
T PF09445_consen 76 S 76 (163)
T ss_dssp -
T ss_pred C
Confidence 5
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-06 Score=72.90 Aligned_cols=97 Identities=22% Similarity=0.199 Sum_probs=58.7
Q ss_pred CCccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC------C--C
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------T--P 226 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~--~ 226 (280)
++.+|||+||++|.++..++++. ...|.++|+.+.- . ..++.++++|+.+. . .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~-----------~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------P-----------LQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S------------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------c-----------ccceeeeecccchhhHHHhhhhhc
Confidence 45899999999999999998887 3489999987650 0 12233334443221 1 1
Q ss_pred --CCCcEEEEEccchhhcCCh---------hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 227 --ETGRYDVIWVQWCIGHLTD---------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 227 --~~~~fDlV~~~~~l~~~~~---------~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
..++||+|+|-.+...-.. .-....+.-+.+.|+|||.+++.-.
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 1258999998763221111 1234556666788999999888643
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=71.73 Aligned_cols=110 Identities=18% Similarity=0.086 Sum_probs=68.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHh--------cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~--------~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 226 (280)
..++.+|+|-+||+|.+...+.+. ...++.|+|+++.++..|+.++.-.+.. ..+..+...|.-..+.
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----~~~~~i~~~d~l~~~~ 119 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----NSNINIIQGDSLENDK 119 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----CBGCEEEES-TTTSHS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----cccccccccccccccc
Confidence 556678999999999998887763 2238999999999999998765432210 1223467777544332
Q ss_pred C--CCcEEEEEccchhhcC--Ch-----------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 227 E--TGRYDVIWVQWCIGHL--TD-----------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 227 ~--~~~fDlV~~~~~l~~~--~~-----------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
. ..+||+|+++--+... .. ..--.|+..+.+.|++||.+.+.
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 2 3689999988332221 00 01125899999999999986554
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.7e-05 Score=64.30 Aligned_cols=100 Identities=19% Similarity=0.083 Sum_probs=76.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.-.+++|||+|+|.|..++..+..+...|...|+.+..+...+-|.+.+ +.++.+...|+.. ++..||+|
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~an-------gv~i~~~~~d~~g---~~~~~Dl~ 146 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAAN-------GVSILFTHADLIG---SPPAFDLL 146 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhc-------cceeEEeeccccC---CCcceeEE
Confidence 3467899999999999999888888889999999999998888888776 4568888888766 34689999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+...++..-+ .-..++. +.+.|+..|..++
T Consensus 147 LagDlfy~~~--~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 147 LAGDLFYNHT--EADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred EeeceecCch--HHHHHHH-HHHHHHhCCCEEE
Confidence 9998764333 4446777 5555555554444
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.1e-05 Score=72.17 Aligned_cols=105 Identities=16% Similarity=0.285 Sum_probs=87.7
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~ 238 (280)
.++|-+|||.-.++..+.+-++..|+-+|+|+..++....+.... .....+...|+....+++++||+|+.-.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-------~~~~~~~~~d~~~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-------RPEMQMVEMDMDQLVFEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-------CcceEEEEecchhccCCCcceeEEEecC
Confidence 389999999999999999889999999999999999988766432 4568899999999999999999999988
Q ss_pred hhhcCChhh--------HHHHHHHHHHcCCCCcEEEEEec
Q 023562 239 CIGHLTDDD--------FVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 239 ~l~~~~~~d--------~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.++++-.++ ....+.++.++|+|||+++...-
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 887754322 24568899999999999877644
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=3e-06 Score=70.42 Aligned_cols=113 Identities=20% Similarity=0.190 Sum_probs=79.4
Q ss_pred chHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeE
Q 023562 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (280)
Q Consensus 137 ~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~ 216 (280)
.+.+..++++.-.-+.+ ...+.++||+|+|.|.++..++ ..+.+|.+.+.|..|+...+.+.-
T Consensus 93 fSe~QF~klL~i~~p~w-~~~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~y--------------- 155 (288)
T KOG3987|consen 93 FSEEQFRKLLVIGGPAW-GQEPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKNY--------------- 155 (288)
T ss_pred ecHHHHHHHHhcCCCcc-CCCCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcCC---------------
Confidence 34444455543211211 3456799999999999999775 556679999999999998776421
Q ss_pred EEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCC-CcEEEEE
Q 023562 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP-GGFFVLK 268 (280)
Q Consensus 217 ~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~Lkp-GG~lii~ 268 (280)
-+....++...+-+||+|.|-+.+.... +.-++++.+..+|+| +|.++++
T Consensus 156 nVl~~~ew~~t~~k~dli~clNlLDRc~--~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 156 NVLTEIEWLQTDVKLDLILCLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ceeeehhhhhcCceeehHHHHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEE
Confidence 1122233332345899999999998777 555899999999999 8888774
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.7e-05 Score=66.40 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=73.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC---CcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~f 231 (280)
..++..|||+|+|+|.++..|++.+ .+++++|+++.+++..++++.. ..+++++.+|+..+.... ...
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--------~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--------NPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--------CSSEEEEES-TTTSCGGGHCSSSE
T ss_pred CCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--------cccceeeecchhccccHHhhcCCc
Confidence 4467899999999999999999887 6799999999999999998874 467999999999987553 356
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCC---CcEEEEE
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~Lkp---GG~lii~ 268 (280)
..|+++-.. +++. .++.++...-+. ...+++.
T Consensus 99 ~~vv~NlPy-~is~----~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 99 LLVVGNLPY-NISS----PILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp EEEEEEETG-TGHH----HHHHHHHHHGGGCEEEEEEEEE
T ss_pred eEEEEEecc-cchH----HHHHHHhhcccccccceEEEEe
Confidence 777777554 4432 455555443333 3444443
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.1e-05 Score=60.87 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=67.1
Q ss_pred CCCccEEEeecCccHHHHHHHH-----hcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCc
Q 023562 156 NQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~-----~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 230 (280)
.+..+|+|+|||.|+++..++. .....|+++|.++..++.+.++....+. ....+..+...++.+... ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS---DLEKRLSFIQGDIADESS-SDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc---hhhccchhhccchhhhcc-cCC
Confidence 4567999999999999998887 4333899999999999999888765431 112456666666654432 245
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.++++.-..=.-++ ..+++.+.+ |+-.+++.=.|
T Consensus 100 ~~~~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 100 PDILVGLHACGDLS----DRALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred CeEEEEeecccchH----HHHHHHHHH---cCCCEEEEcCC
Confidence 67776533322222 245555544 55544444333
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.4e-05 Score=63.01 Aligned_cols=104 Identities=20% Similarity=0.180 Sum_probs=80.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fDl 233 (280)
.++.|||++|-|-|.+.-.+-++-+..-..++..+..++..+...-.. ..++....+-.++. .++++.||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------k~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------KENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------ccceEEEecchHhhhccccccCcce
Confidence 467899999999999988666666668889999999999998876553 45677777766554 245688999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+--..-.+- +|+..+.+.+.++|||+|++-+-
T Consensus 173 I~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 173 IYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eEeechhhHH--HHHHHHHHHHhhhcCCCceEEEe
Confidence 9865332332 48889999999999999998664
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.1e-05 Score=65.52 Aligned_cols=117 Identities=17% Similarity=0.136 Sum_probs=66.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCC---CCCCCCCcceeEEEccCCCCCCC---
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPEN---HMAPDMHKATNFFCVPLQDFTPE--- 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~---~~~~~~~~~i~~~~~d~~~~~~~--- 227 (280)
..+....+|+|||.|......+.. ++....|||+.+...+.|+....... .........+++..+|+.+.+..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 556789999999999998766544 55579999999998887765332100 00011134677888887653211
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
-...|+|+++... ++ +++...+.+....||+|-+|+-...+...
T Consensus 120 ~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 120 WSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIISTKPFCPR 163 (205)
T ss_dssp GHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS-T
T ss_pred hcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEECCCcCCC
Confidence 0357999998653 33 46767778888899999988776665443
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00019 Score=65.86 Aligned_cols=108 Identities=22% Similarity=0.191 Sum_probs=81.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC---cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~---~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~ 228 (280)
+.++.+|||+.+++|.=+.++++.... .|+++|.|+.=++..++++...|. .++.....|...++ ...
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEeccccccccccccc
Confidence 677899999999999999999887543 369999999999999999988765 34667777765443 222
Q ss_pred CcEEEEEc----c--chhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEE
Q 023562 229 GRYDVIWV----Q--WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~----~--~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~ 268 (280)
++||.|++ + .++..-++ .+ ...+|..+.+.|||||.++.+
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 36999982 2 44432221 11 357899999999999999875
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.8e-05 Score=64.06 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=70.9
Q ss_pred hHHHHHHHHhccCCCc-cCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeE
Q 023562 138 SEAFLQMLLSDRFPNA-RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (280)
Q Consensus 138 ~~~~l~~~l~~~l~~~-~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~ 216 (280)
+..++...+....... ......++|||||=+......- ...+ .|+.+|+++ ..-.+
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~-~~~f-dvt~IDLns---------------------~~~~I 87 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST-SGWF-DVTRIDLNS---------------------QHPGI 87 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccc-cCce-eeEEeecCC---------------------CCCCc
Confidence 3445555554432211 1123479999999755433321 1234 499999864 11233
Q ss_pred EEccCCCCCC---CCCcEEEEEccchhhcCChhh-HHHHHHHHHHcCCCCcE-----EEEE
Q 023562 217 FCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGF-----FVLK 268 (280)
Q Consensus 217 ~~~d~~~~~~---~~~~fDlV~~~~~l~~~~~~d-~~~~l~~~~r~LkpGG~-----lii~ 268 (280)
.+.|+-+.|. +.++||+|.++.||.++|++. .-..++++.+.|+|+|. ++++
T Consensus 88 ~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 88 LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred eeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE
Confidence 5566655543 357999999999999999754 45799999999999999 7776
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.89 E-value=2e-05 Score=72.19 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=45.2
Q ss_pred cEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC
Q 023562 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 224 (280)
+|||+-||.|.++..++.. +.+|+|||+++.+++.|++++..+++ .|++|..++.+++
T Consensus 199 ~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEeeccch
Confidence 7999999999999988754 55799999999999999999988765 5789998776543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.3e-05 Score=64.87 Aligned_cols=123 Identities=22% Similarity=0.270 Sum_probs=76.4
Q ss_pred hHHHHHHHHhccCCCccCCCCccEEEeecCccH--HHHHHHHhcC-C-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc
Q 023562 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGR--ITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (280)
Q Consensus 138 ~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~--~s~~l~~~~~-~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~ 213 (280)
.+.||.+.+.....+ ..-...||||||.=. ..-.++++.. + +|..||..|..+..++..+... .+
T Consensus 52 nR~Fl~RaVr~la~~---~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~--------~~ 120 (267)
T PF04672_consen 52 NRAFLRRAVRYLAEE---AGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN--------PR 120 (267)
T ss_dssp HHHHHHHHHHHHHCT---T---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT---------TT
T ss_pred HHHHHHHHHHHHHHh---cCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC--------CC
Confidence 346677666544321 122469999999642 2334555432 2 8999999999999999998773 34
Q ss_pred --eeEEEccCCCCC--CC----CCcEE-----EEEccchhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 214 --TNFFCVPLQDFT--PE----TGRYD-----VIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 214 --i~~~~~d~~~~~--~~----~~~fD-----lV~~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..++.+|+.+.. +. .+-+| .+++..++||+++ ++...+++.+...|.||.+++++--+
T Consensus 121 g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 121 GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 789999987642 00 01233 5667889999988 77899999999999999999998554
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.9e-05 Score=62.89 Aligned_cols=99 Identities=18% Similarity=0.133 Sum_probs=70.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
..++.+|+|+|+-+|.++..+++.... .|+++|+.|--. ..++.++++|+++-+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------------~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------------IPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------------CCCceEEeeeccCccHHHHHHH
Confidence 456789999999999999988777554 499999854221 356999999987653
Q ss_pred -CCCCcEEEEEccch--------hhcCChhhH-HHHHHHHHHcCCCCcEEEEEec
Q 023562 226 -PETGRYDVIWVQWC--------IGHLTDDDF-VSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 -~~~~~fDlV~~~~~--------l~~~~~~d~-~~~l~~~~r~LkpGG~lii~e~ 270 (280)
....++|+|+|-.. .+|.....+ ..++.-+..+|+|||.+++...
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 22345799996432 233332233 4566777789999999998643
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00018 Score=65.64 Aligned_cols=108 Identities=16% Similarity=0.089 Sum_probs=82.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC----------------------------------------cEEEEeCCHHHHHHH
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN----------------------------------------EVDLLEPVSHFLDAA 196 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~----------------------------------------~v~~vD~S~~~l~~A 196 (280)
++..++|-=||+|.+.+..+..+.+ .+.|+|+++.||+.|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 3357999999999998877655421 277999999999999
Q ss_pred HHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhh-cCChh-----hHHHHHHHHHHcCCCCcEEEEEe
Q 023562 197 RESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLTDD-----DFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 197 ~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~-~~~~~-----d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+.|+...|+ ...+.|.++|+.++..+.+++|+|+||--.. .+... -+..+.+.+++.++--+.++|+.
T Consensus 271 k~NA~~AGv-----~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 271 KANARAAGV-----GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHhcCC-----CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 999998877 6779999999999975547899999993211 22221 12456667778888878888763
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.1e-05 Score=67.37 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=79.1
Q ss_pred CCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCC-CCCCCcceeEEEccCCCCC-CCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFT-PETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~-~~~~~fDl 233 (280)
.-.+||-+|.|-|...+.+++. +..+|+.||.+|+||+.++.+..-..+. +.-...+++++..|...|- ...+.||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 4468999999999999998854 2459999999999999998432211111 2222567889999987763 33468999
Q ss_pred EEcc------chhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQ------WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~------~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+.. .++..+- -.+|..-+++.|+++|.+++.
T Consensus 369 vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 369 VIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred EEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEe
Confidence 9854 2333222 147999999999999999986
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.5e-05 Score=65.61 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=62.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CCCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD 232 (280)
....|+|.-||.|..+..++.++.. |.++|++|.-|.+|+.+++-.|+ +.+++|+++|+.++ ......+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI-----~~rItFI~GD~ld~~~~lq~~K~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGV-----PDRITFICGDFLDLASKLKADKIKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecC-----CceeEEEechHHHHHHHHhhhhheee
Confidence 3458999999999999999988775 99999999999999999988766 66899999998764 23334578
Q ss_pred EEEcc
Q 023562 233 VIWVQ 237 (280)
Q Consensus 233 lV~~~ 237 (280)
+|+.+
T Consensus 168 ~vf~s 172 (263)
T KOG2730|consen 168 CVFLS 172 (263)
T ss_pred eeecC
Confidence 88865
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.8e-05 Score=59.28 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=46.6
Q ss_pred cEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC
Q 023562 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~ 223 (280)
.++|+|||.|.++..+++.+.. +++++|+++.+.+.+++++..+++ .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeeeC
Confidence 3899999999999999887765 799999999999999999876543 246666665543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.3e-05 Score=70.06 Aligned_cols=119 Identities=16% Similarity=0.062 Sum_probs=75.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.+++|||+|.|+|.....+-.-.++ .++.++.|+..-+........... .....+..-+..|-.+++.. ..|++|
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--~~td~r~s~vt~dRl~lp~a-d~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST--EKTDWRASDVTEDRLSLPAA-DLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc--ccCCCCCCccchhccCCCcc-ceeehh
Confidence 4678999999999877655444444 788899888766554443322111 00011111222233333333 578888
Q ss_pred EccchhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEeccCCCCCCC
Q 023562 235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGSEG 278 (280)
Q Consensus 235 ~~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~ 278 (280)
+...-+.+... ..+...++.+..++.|||.|+|.|.-+..||.-
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~ 234 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFER 234 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHH
Confidence 77665555433 345669999999999999999999988887753
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00016 Score=61.12 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=68.5
Q ss_pred EEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-CCCCCCCCCcEEEEEccc
Q 023562 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 161 VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~fDlV~~~~ 238 (280)
|.|+||--|++..+|++++.. .++++|+++.-++.|++++...++ ..++++..+| +..+++. +..|.|+.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----~~~i~~rlgdGL~~l~~~-e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----EDRIEVRLGDGLEVLKPG-EDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE-SGGGG--GG-G---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----cccEEEEECCcccccCCC-CCCCEEEEec
Confidence 689999999999999998775 799999999999999999988766 5679999998 4444432 2379998664
Q ss_pred h--------hhcCChh---------hHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 239 C--------IGHLTDD---------DFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 239 ~--------l~~~~~~---------d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+ +...++. ....-...+++.|...|+-++.|.+.
T Consensus 75 MGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 75 MGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp E-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEE
T ss_pred CCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEE
Confidence 3 1100000 00123445666666677777766654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=65.59 Aligned_cols=88 Identities=17% Similarity=0.088 Sum_probs=62.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.++||+||++|.++..+++++. .|++||.++ |-. .+.. ..++.....|...+.+..+.+|++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~----~L~~--------~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQ----SLMD--------TGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCH----hhhC--------CCCEEEEeccCcccCCCCCCCCEE
Confidence 35778999999999999999999988 699999543 222 1222 356888888776665445789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPG 262 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpG 262 (280)
+|-.+- ....+.+-+.++|..|
T Consensus 275 VcDmve------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVE------KPARVAELMAQWLVNG 296 (357)
T ss_pred EEeccc------CHHHHHHHHHHHHhcC
Confidence 886652 2335666666666655
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=64.74 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=66.1
Q ss_pred CCccEEEeecCccHHHHHHHHh--cCC-cEEEEeCCHHHHHHHHHHcC-cCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR--YFN-EVDLLEPVSHFLDAARESLA-PENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~--~~~-~v~~vD~S~~~l~~A~~~~~-~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
.+.+|+=||||+=-++.-++.+ +.. .|+++|+++.+++.+++... ..++ ..++.|+++|..+...+-..||
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~~~~~dl~~~D 194 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVLDVTYDLKEYD 194 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-GG----S
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchhccccccccCC
Confidence 4569999999987766655543 222 69999999999999998776 3333 5678999999877654446899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|+...... ++..+..+++..+.+.++||..+++-
T Consensus 195 vV~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 195 VVFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 999875543 22346679999999999999999885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00063 Score=57.65 Aligned_cols=115 Identities=15% Similarity=0.033 Sum_probs=74.0
Q ss_pred HHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcC-C-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 142 l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~-~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
|...+...+......++.+||-+|+.+|....++..-.. . .|.+|++|+......-...+. ..|+--+-.
T Consensus 58 LaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--------R~NIiPIl~ 129 (229)
T PF01269_consen 58 LAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--------RPNIIPILE 129 (229)
T ss_dssp HHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------STTEEEEES
T ss_pred HHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--------CCceeeeec
Confidence 444444444444577889999999999999888876533 2 799999999664443333332 356777777
Q ss_pred cCCCC---CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 220 PLQDF---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 220 d~~~~---~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+..- ..--+.+|+|++--. + +++.+-++.++...||+||.+++.
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVa--Q--p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVA--Q--PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-S--S--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCChHHhhcccccccEEEecCC--C--hHHHHHHHHHHHhhccCCcEEEEE
Confidence 87643 122358999987544 1 246678899999999999988875
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00011 Score=68.81 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=77.9
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
+.|-..+.+... ...+..++|+-||||.++..++ +++..|.|+++++..++.|+.++..+|+ .|.+|+++
T Consensus 369 evLys~i~e~~~---l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi~g 438 (534)
T KOG2187|consen 369 EVLYSTIGEWAG---LPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQINGI------SNATFIVG 438 (534)
T ss_pred HHHHHHHHHHhC---CCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcCc------cceeeeec
Confidence 344444554444 5566789999999999999876 5566899999999999999999998775 68899999
Q ss_pred cCCCCCCC--C---CcEEEEEccchhhcCChhhH-HHHHHHHHHcCCCCcEEEEEecc
Q 023562 220 PLQDFTPE--T---GRYDVIWVQWCIGHLTDDDF-VSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 220 d~~~~~~~--~---~~fDlV~~~~~l~~~~~~d~-~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
-.+++-.. . .+=++|....--. .-+ ..+++.+.+.-++-=.++++=|.
T Consensus 439 qaE~~~~sl~~~~~~~~~~v~iiDPpR----~Glh~~~ik~l~~~~~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 439 QAEDLFPSLLTPCCDSETLVAIIDPPR----KGLHMKVIKALRAYKNPRRLVYVSCNP 492 (534)
T ss_pred chhhccchhcccCCCCCceEEEECCCc----ccccHHHHHHHHhccCccceEEEEcCH
Confidence 66554211 0 1224332221100 011 25666666666677777776443
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.53 E-value=2.4e-05 Score=58.83 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=42.9
Q ss_pred EEeecCccHHHHHHHHhc---C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEEEE
Q 023562 162 LDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (280)
Q Consensus 162 LDlGcG~G~~s~~l~~~~---~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDlV~ 235 (280)
||+|+..|..+..+++.. . .+++++|+.+. .+.+++..+..++ ..+++++.++..+.- ...++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 689999999988777532 1 26999999985 2233333332222 456999999876541 2236999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.-.. |- .+.....++.+...|+|||++++.|
T Consensus 75 iDg~--H~-~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 75 IDGD--HS-YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp EES------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ECCC--CC-HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 8653 21 1355678889999999999999875
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00037 Score=59.50 Aligned_cols=97 Identities=25% Similarity=0.186 Sum_probs=71.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC--CCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fDl 233 (280)
.++..+||+|+-||.++..+++++...|.++|..-.++..--++- ...+.+...++..+.++ .+..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d----------~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND----------PRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------CcEEEEecCChhhCCHHHcccCCCe
Confidence 456789999999999999999999999999999877765432221 12244455566655422 136789
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
|++--+|. .+..++-.+..+++|+|.++.
T Consensus 148 ~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 148 IVIDVSFI-----SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred EEEEeehh-----hHHHHHHHHHHhcCCCceEEE
Confidence 99876655 455899999999999997765
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.50 E-value=7.1e-05 Score=70.13 Aligned_cols=101 Identities=14% Similarity=0.223 Sum_probs=67.3
Q ss_pred CccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
-..|+|..+|.|.++..|.+.-.- +|+-+ ..+..+...-+ .|+ +-.+..--+.|+.-+.+||+|.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIyd----RGL--------IG~yhDWCE~fsTYPRTYDLlH 432 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYD----RGL--------IGVYHDWCEAFSTYPRTYDLLH 432 (506)
T ss_pred eeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhh----ccc--------chhccchhhccCCCCcchhhee
Confidence 347999999999999988765322 33333 22222322211 122 1122333355665568999999
Q ss_pred ccchhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+..+|....+ =++..++-++-|+|||||+++|.|++
T Consensus 433 A~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 433 ADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 9988876543 35688999999999999999998765
|
; GO: 0008168 methyltransferase activity |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00043 Score=61.60 Aligned_cols=108 Identities=20% Similarity=0.140 Sum_probs=80.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~ 230 (280)
+.++.+|||+.+++|.-+..+++.... .|+++|+++.-+...+.++...|. .++.....|..... .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeeccccccccccccc
Confidence 567789999999999999999887653 899999999999999998887654 45666666665542 12246
Q ss_pred EEEEEc----c--chhhcCChh-------h-------HHHHHHHHHHcC----CCCcEEEEE
Q 023562 231 YDVIWV----Q--WCIGHLTDD-------D-------FVSFFKRAKVGL----KPGGFFVLK 268 (280)
Q Consensus 231 fDlV~~----~--~~l~~~~~~-------d-------~~~~l~~~~r~L----kpGG~lii~ 268 (280)
||.|+. + .++..-++. + ..++|+.+.+.+ ||||+++.+
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYs 218 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYS 218 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEE
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEE
Confidence 999983 2 333332221 1 357899999999 999999886
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=57.27 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=76.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--CCCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~ 230 (280)
..++.+|++-|.|.|.++.++++.... ++.-+|+.+.-.+.|++.+++.++ +.++++..-|+....+ ....
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~hrDVc~~GF~~ks~~ 177 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTHRDVCGSGFLIKSLK 177 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEEeecccCCccccccc
Confidence 678899999999999999999876433 899999999999999999998765 7889999998876543 2468
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCc-EEEE
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVL 267 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG-~lii 267 (280)
+|.|+.-.- ..-.++-.++.+||.+| +++.
T Consensus 178 aDaVFLDlP-------aPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 178 ADAVFLDLP-------APWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred cceEEEcCC-------ChhhhhhhhHHHhhhcCceEEe
Confidence 899876432 22234444555777766 4443
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00021 Score=57.31 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=76.2
Q ss_pred cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCC
Q 023562 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (280)
Q Consensus 134 ~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~ 211 (280)
.+-.+++.|...+.+-. +.-.+.+||++|.|.=.++--+...... .|...|-+++.++..++....+.....
T Consensus 9 ciwpseeala~~~l~~~---n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~--- 82 (201)
T KOG3201|consen 9 CIWPSEEALAWTILRDP---NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL--- 82 (201)
T ss_pred EecccHHHHHHHHHhch---hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc---
Confidence 34444555554443211 1334679999999965554444433333 899999999999988776544211000
Q ss_pred cceeEEEccCCCC--CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 212 KATNFFCVPLQDF--TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 212 ~~i~~~~~d~~~~--~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
..+....-+...- ..+...||.|++..++-. ++--..+++.+.+.|+|.|.-++..+
T Consensus 83 tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 83 TSCCVLRWLIWGAQSQQEQHTFDIILAADCLFF--DEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred ceehhhHHHHhhhHHHHhhCcccEEEeccchhH--HHHHHHHHHHHHHHhCcccceeEecC
Confidence 1111111111110 123358999999987643 33446789999999999998777544
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=6.5e-05 Score=59.75 Aligned_cols=47 Identities=28% Similarity=0.375 Sum_probs=42.4
Q ss_pred CCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 222 ~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
....+.+++.|+|++..++.|++-++...+++.+.+.|||||++-|+
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 33456679999999999999999999999999999999999999886
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00047 Score=57.01 Aligned_cols=110 Identities=19% Similarity=0.205 Sum_probs=69.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCC-cEEEEeCCHH----------HHHHHHHHcCcCCCCCCCCCcceeEEEccCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSH----------FLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~-~v~~vD~S~~----------~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~ 222 (280)
.+++.+|+|+=-|.|.+++-+... +.. .|+++=+.+. +-..+++.. ..|...+..++.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~----------~aN~e~~~~~~~ 115 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV----------YANVEVIGKPLV 115 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh----------hhhhhhhCCccc
Confidence 567889999999999999955533 222 4555543332 122222211 234455555555
Q ss_pred CCCCCCCcEEEEEccchhh--c---CChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 223 DFTPETGRYDVIWVQWCIG--H---LTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 223 ~~~~~~~~fDlV~~~~~l~--~---~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
.+. .++..|+++.+...| | +......++...+++.|||||.+.+.|+....|
T Consensus 116 A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG 172 (238)
T COG4798 116 ALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPG 172 (238)
T ss_pred ccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCC
Confidence 555 336778887642221 1 223456789999999999999999999987654
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=58.80 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHc---CcCC--------------------CCCCC----
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL---APEN--------------------HMAPD---- 209 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~---~~~~--------------------~~~~~---- 209 (280)
...+||--|||.|+++..|+..|+. +-|-+.|--|+=...=.+ ...+ +....
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 4568999999999999999999886 888898888865433222 1100 00000
Q ss_pred -----CCc--ceeEEEccCCCCCC---CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 210 -----MHK--ATNFFCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 210 -----~~~--~i~~~~~d~~~~~~---~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+. ......+|+.+.-. ..+.||+|+.++.+.-.. ..-.+|+.+..+|||||+.+=.
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCCcEEEec
Confidence 000 11112345444321 124799999998876554 7889999999999999988654
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0018 Score=57.67 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=52.5
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcC-CCCCCCCCcceeEE
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFF 217 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~-~~~~~~~~~~i~~~ 217 (280)
.++.+++...-.. .....++||||||...+-.-|..+.+. +++|.|+++..++.|++++..+ ++ ..+|++.
T Consensus 87 ~~i~DlL~~~~~~--~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----~~~I~l~ 159 (299)
T PF05971_consen 87 HWIADLLASSNPG--IPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----ESRIELR 159 (299)
T ss_dssp HHHHHHHT--TCG--CS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------TTTEEEE
T ss_pred HHHHHHhhccccc--cccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----ccceEEE
Confidence 4555655532111 122568999999998665544433222 7999999999999999999886 54 4567766
Q ss_pred Ecc----CCC-CCCCCCcEEEEEccchhhc
Q 023562 218 CVP----LQD-FTPETGRYDVIWVQWCIGH 242 (280)
Q Consensus 218 ~~d----~~~-~~~~~~~fDlV~~~~~l~~ 242 (280)
... +.. +..+.+.||+.+|+--|+-
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EcCCccccchhhhcccceeeEEecCCcccc
Confidence 542 211 1223368999999976654
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0026 Score=52.37 Aligned_cols=102 Identities=21% Similarity=0.163 Sum_probs=64.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-CC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCCCC------
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFT------ 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~------ 225 (280)
..++.+|||+||.+|.++.-..++. +. -|.|||+-. +.. ...++++++ |+++-.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p--------~~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEP--------PEGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccC--------CCCcccccccccCCHHHHHHHH
Confidence 4567899999999999998665553 32 689999621 111 234566666 666531
Q ss_pred --CCCCcEEEEEccch--------hhcCChhhH-HHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 226 --PETGRYDVIWVQWC--------IGHLTDDDF-VSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 226 --~~~~~fDlV~~~~~--------l~~~~~~d~-~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
.+..+.|+|++-.. ..|....++ ..++--....++|+|.|++.-+...
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 34568999997643 222111122 3344445567899999999866543
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0012 Score=52.21 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=58.1
Q ss_pred cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEEEEccchhhcCChh---------hHHH
Q 023562 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDD---------DFVS 250 (280)
Q Consensus 182 ~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDlV~~~~~l~~~~~~---------d~~~ 250 (280)
+|.++|+-+.+|+..++++...++ ..+++++..+=+.+. .+.+++|+++.|.. |+|-. .-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~ 73 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLK 73 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHH
Confidence 489999999999999999988655 457888887655443 12258999988744 44432 2467
Q ss_pred HHHHHHHcCCCCcEEEEEeccC
Q 023562 251 FFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 251 ~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.++.+.++|+|||++.++-...
T Consensus 74 Al~~al~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHHHHHHEEEEEEEEEEE--S
T ss_pred HHHHHHHhhccCCEEEEEEeCC
Confidence 8999999999999999875543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.011 Score=49.40 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=80.0
Q ss_pred HHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 141 ~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
-|...+...+......++.+||=+|+.+|....++..--.. .+.+|++|+.+....-..+.. ..|+--+..
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--------R~Ni~PIL~ 131 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--------RPNIIPILE 131 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--------CCCceeeec
Confidence 34455545555555788999999999999998888765433 699999999987665555444 355666777
Q ss_pred cCCCCC---CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 220 PLQDFT---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 220 d~~~~~---~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+..-. .--+..|+|+.--+ .++..+-+..++..-||+||.++++
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 765421 11246888876432 2335567889999999999965553
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0028 Score=58.98 Aligned_cols=121 Identities=19% Similarity=0.149 Sum_probs=77.7
Q ss_pred CCCccEEEeecCccHHHH--HHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcE
Q 023562 156 NQHLVALDCGSGIGRITK--NLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~--~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (280)
..+..+.|+|.|.|.-.- ..+.+. ...++.||.|..|+...........-.+..+..++.|+..- ++ .....|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~---~pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQR---LPIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhccc---CCCCcccce
Confidence 345688899888775433 333333 33799999999999999888766211111111121222211 12 122469
Q ss_pred EEEEccchhhcCChhhH--HHHHHHHHHcCCCCcEEEEEeccCCCCCCCC
Q 023562 232 DVIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKENIARSGSEGI 279 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~e~~~~~~~~~~ 279 (280)
|+|++.+.+++++.... ....+-..+..++||.+++.|+-.+-++..+
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l 325 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELL 325 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhH
Confidence 99999999999876432 2334456677899999999999888777654
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0043 Score=53.80 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=66.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC---CCCCCc-EE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGR-YD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~-fD 232 (280)
...+||++|+|+|..+...+.....+|...|+...+ +..+.+....+......+..+.....+..+. ..-... +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 356899999999988887766566568888865443 3333332222211111122344443333322 111123 99
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|+++.++.+-. ....++..++..|..+|.+++.-
T Consensus 165 lilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 165 LILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEE
Confidence 999998876644 55688888999999999666543
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0022 Score=55.34 Aligned_cols=82 Identities=13% Similarity=0.019 Sum_probs=57.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
...+.+|+|||||.--++..+...... .+.++|++..+++......... +.+.++...|+..-++. ...|+
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-------~~~~~~~v~Dl~~~~~~-~~~Dl 174 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-------GVPHDARVRDLLSDPPK-EPADL 174 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-------T-CEEEEEE-TTTSHTT-SEESE
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-------CCCcceeEeeeeccCCC-CCcch
Confidence 345789999999999998877744332 8999999999999998876654 35677777787665444 68999
Q ss_pred EEccchhhcCC
Q 023562 234 IWVQWCIGHLT 244 (280)
Q Consensus 234 V~~~~~l~~~~ 244 (280)
.+.-=+++-+.
T Consensus 175 aLllK~lp~le 185 (251)
T PF07091_consen 175 ALLLKTLPCLE 185 (251)
T ss_dssp EEEET-HHHHH
T ss_pred hhHHHHHHHHH
Confidence 99876655443
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0017 Score=54.16 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=67.0
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCC-CCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.-.+.|||||.|.+...|+..+++ -+.|.+|--..-+..++++...+.. ....-.|+.....+..-+.+ +-|---.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp--n~f~kgq 138 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP--NFFEKGQ 138 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc--chhhhcc
Confidence 346899999999999999888777 7899999888888888877653211 11112344455444333211 1111111
Q ss_pred ccchhhcCChhh-----------HHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDD-----------FVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d-----------~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.+-.+..++++. -...+.+..-+|++||.++....
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 111112222221 13577888899999999987643
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0033 Score=48.57 Aligned_cols=47 Identities=17% Similarity=-0.014 Sum_probs=43.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~ 203 (280)
.+.+|+|+|++.|..+++++-++...|.++++++...+..+++++..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 45799999999999999999999999999999999999999988764
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0039 Score=55.80 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=59.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~ 228 (280)
..++..++|+-||.|..+..+++... ..|+++|.++.+++.+++++... ..++.++++++.++. ...
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHHHHHHHHhcCC
Confidence 45667999999999999999998743 47999999999999999987542 346888888877653 123
Q ss_pred CcEEEEEcc
Q 023562 229 GRYDVIWVQ 237 (280)
Q Consensus 229 ~~fDlV~~~ 237 (280)
.++|.|+..
T Consensus 91 ~~vDgIl~D 99 (305)
T TIGR00006 91 TKIDGILVD 99 (305)
T ss_pred CcccEEEEe
Confidence 568888744
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0091 Score=52.89 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=67.3
Q ss_pred cEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC--CCcEEEEEcc
Q 023562 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQ 237 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fDlV~~~ 237 (280)
+|+|+-||.|.++..+.+.++..+.++|+++.+++..+.++... ..+.|+.++... ...+|+++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------------~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------------LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------------CccCccccCchhhcCCCCCEEEeC
Confidence 69999999999999998888888999999999999999887541 455677666532 2579999854
Q ss_pred c-----hhhc----CChh--hH-HHHHHHHHHcCCCCcEEEEEeccC
Q 023562 238 W-----CIGH----LTDD--DF-VSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 238 ~-----~l~~----~~~~--d~-~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
. +... ..++ .+ ..++ ++.+.++|. +++.|||.
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~-~~i~~~~P~--~~v~ENV~ 113 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEII-RILKEKKPK--YFLLENVK 113 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHH-HHHHhcCCC--EEEEEcCc
Confidence 2 1111 1111 12 2333 344445665 77889984
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0034 Score=55.29 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=81.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~f 231 (280)
..++.+||-+|.|-|.+.+..+.+ .+.+++.+|+....++..++.++... ..-.+.++..+-+|-..+ ....++|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la--~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLA--CGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHh--cccCCCceEEEeccHHHHHHHhccCCc
Confidence 446789999999999998877766 23389999999999999998876532 223356788888875444 1224799
Q ss_pred EEEEccch--hhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQWC--IGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~~--l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|+.-.. ..-.-..-...++..+.+.||+||++++.+
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 99985422 211111123578999999999999998874
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0038 Score=57.73 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=58.0
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEEEcc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQ 237 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV~~~ 237 (280)
..|||+|.|||.++....+.+.+.|++++.=..|.+.|++....+|. ..+++++.---++.... ..+.|+++.-
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----SdkI~vInkrStev~vg~~~RadI~v~e 142 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----SDKINVINKRSTEVKVGGSSRADIAVRE 142 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----ccceeeeccccceeeecCcchhhhhhHh
Confidence 46899999999999988888988999999999999999999888766 56777776554444322 1346776654
Q ss_pred c
Q 023562 238 W 238 (280)
Q Consensus 238 ~ 238 (280)
.
T Consensus 143 ~ 143 (636)
T KOG1501|consen 143 D 143 (636)
T ss_pred h
Confidence 3
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.017 Score=48.84 Aligned_cols=77 Identities=16% Similarity=-0.020 Sum_probs=60.5
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+.++.|+||-.+++..++.+.+.. .+++.|+++..++.|.+++...++ ...++..++|...--..+..+|.|+.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----SERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----cceEEEeccCCccccCccCCcCEEEE
Confidence 446999999999999999988665 899999999999999999998766 56677777776322122247899987
Q ss_pred cch
Q 023562 237 QWC 239 (280)
Q Consensus 237 ~~~ 239 (280)
..+
T Consensus 92 AGM 94 (226)
T COG2384 92 AGM 94 (226)
T ss_pred eCC
Confidence 643
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.014 Score=53.80 Aligned_cols=107 Identities=16% Similarity=0.069 Sum_probs=77.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~ 229 (280)
+.++.||||..+-+|.-+-+++.-..+ .|.+.|.+..-+...++++...|. .+......|...++ ++ +
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~~~-~ 311 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKEFP-G 311 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccccC-c
Confidence 677889999999999888777765332 699999999999999999887654 34445566766654 33 4
Q ss_pred cEEEEE----ccc--hhhcCCh-------------h-hHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIW----VQW--CIGHLTD-------------D-DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~----~~~--~l~~~~~-------------~-d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||-|+ |+. ++.--.. . -..++|..+..++++||+|+.+
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEE
Confidence 899997 333 2211000 0 1357888999999999999886
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0059 Score=52.86 Aligned_cols=109 Identities=18% Similarity=0.105 Sum_probs=72.0
Q ss_pred cEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCC---CCCCCcceeEEEccCCCCC-CCCCcEEEEE
Q 023562 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM---APDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~---~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~ 235 (280)
+|||+-+|.|..+..++.++.. |+++|-|+.+....+.++...... ......+++.+.+|..++- ....+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 8999999999999999988886 999999999988888776652100 0001246888888876652 1224799999
Q ss_pred ccchhhc----------------C--ChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGH----------------L--TDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~----------------~--~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+--.+.| + .+++-..+|..+.++-+ -.+++.++-
T Consensus 170 lDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~--kRVVVKrp~ 221 (250)
T PRK10742 170 LDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT--KRVVVKRPD 221 (250)
T ss_pred ECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC--ceEEEecCC
Confidence 4422222 1 12234466666666544 456666543
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.017 Score=50.34 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=36.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcC---------CcEEEEeCCHHHHHHHHHHcCc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~---------~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
.+.+|+|+|+|.|.++..+++... .+++.||+|+.+.+.-++++..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 357999999999999999987522 1799999999999999998876
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.018 Score=54.51 Aligned_cols=121 Identities=16% Similarity=0.225 Sum_probs=82.8
Q ss_pred HHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHh---cCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeE
Q 023562 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR---YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (280)
Q Consensus 142 l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~---~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~ 216 (280)
+...+..+.++...+....|+-+|+|.|-+....++. ... ++.+||-+|.++-..+.+.-+ .-..++++
T Consensus 352 i~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~------~W~~~Vti 425 (649)
T KOG0822|consen 352 ILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE------CWDNRVTI 425 (649)
T ss_pred HHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh------hhcCeeEE
Confidence 3333433433222333567899999999776655432 222 799999999998877653222 11467999
Q ss_pred EEccCCCCCCCCCcEEEEEccchhhcCChhhH-HHHHHHHHHcCCCCcEEEEEe
Q 023562 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF-VSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 217 ~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~-~~~l~~~~r~LkpGG~lii~e 269 (280)
+..|+..|..+..+.|++++- .|.-+.+.++ .+-+.-+.+.|||+|+.+=..
T Consensus 426 i~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 426 ISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred EeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 999999998655789988754 4455556555 678889999999999876443
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0032 Score=55.17 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=66.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH-cCcC---CCCCCCCCcceeEEEccCCCCCC-CCC-
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES-LAPE---NHMAPDMHKATNFFCVPLQDFTP-ETG- 229 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~-~~~~---~~~~~~~~~~i~~~~~d~~~~~~-~~~- 229 (280)
..+++|||+|||.|.-.+.....+...++..|+|...++.-.-- +... +........-.......+.++.. ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 46789999999999999888777766799999998888422110 0000 00000001112222221113221 113
Q ss_pred -cEEEEEccchhhcCChhhHHHH-HHHHHHcCCCCcEEEEE
Q 023562 230 -RYDVIWVQWCIGHLTDDDFVSF-FKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 -~fDlV~~~~~l~~~~~~d~~~~-l~~~~r~LkpGG~lii~ 268 (280)
.||+|.++-.+.-.+ .++.+ .-....+++++|.+++.
T Consensus 195 ~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 195 THYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhhh
Confidence 799999998776554 44455 66667788999988764
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.011 Score=54.59 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=72.9
Q ss_pred CCccEEEeecCccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCc-ceeEEEccCCCCC-CCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFT-PETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~--~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~-~~~~~fD 232 (280)
.+.+|||.=+|+|.=++..+.. +...|++.|+|+.+++..++|++.+++ .. .+.+.+.|+..+- .....||
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~-----~~~~~~v~~~DAn~ll~~~~~~fD 123 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL-----EDERIEVSNMDANVLLYSRQERFD 123 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT------SGCCEEEEES-HHHHHCHSTT-EE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc-----cCceEEEehhhHHHHhhhccccCC
Confidence 3568999999999888777766 445899999999999999999888766 23 4777777766542 1347899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|=.- -+. ....|+..+.+.++.||++.++-
T Consensus 124 ~IDlD----PfG--Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 124 VIDLD----PFG--SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEEE------SS----HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeC----CCC--CccHhHHHHHHHhhcCCEEEEec
Confidence 99543 112 34489999999999999999973
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.019 Score=52.29 Aligned_cols=114 Identities=17% Similarity=0.074 Sum_probs=58.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHh--------c---C---C---cEEEEeCCH-HHHHHHHHHcCcC-CCCCCCCCccee
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR--------Y---F---N---EVDLLEPVS-HFLDAARESLAPE-NHMAPDMHKATN 215 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~--------~---~---~---~v~~vD~S~-~~l~~A~~~~~~~-~~~~~~~~~~i~ 215 (280)
.....+|+|+||..|..+..+.+. + . . +|..-|.-. ..-...+..-... .+. .....-+.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~-~~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK-KFRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH-HTTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC-CCceEEEE
Confidence 345679999999999988866542 1 1 0 577777432 2222111110000 000 00001122
Q ss_pred EEEccCCCCCCCCCcEEEEEccchhhcCCh-------------------------------------hhHHHHHHHHHHc
Q 023562 216 FFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------------DDFVSFFKRAKVG 258 (280)
Q Consensus 216 ~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~-------------------------------------~d~~~~l~~~~r~ 258 (280)
-+.+.+-.--+++++.|++++.+++|++.. .|+..||+.=++-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 223344333356689999999999988653 1456677777778
Q ss_pred CCCCcEEEEEe
Q 023562 259 LKPGGFFVLKE 269 (280)
Q Consensus 259 LkpGG~lii~e 269 (280)
|+|||.+++.=
T Consensus 173 Lv~GG~mvl~~ 183 (334)
T PF03492_consen 173 LVPGGRMVLTF 183 (334)
T ss_dssp EEEEEEEEEEE
T ss_pred eccCcEEEEEE
Confidence 99999999873
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.053 Score=43.13 Aligned_cols=101 Identities=20% Similarity=0.096 Sum_probs=65.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..+.++.+|+|.|-|++....++.+...-+|+++++-.+..++-+.-..+. .....|..-|+-.++..+-.+=+|
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-----~k~trf~RkdlwK~dl~dy~~vvi 144 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-----AKSTRFRRKDLWKVDLRDYRNVVI 144 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-----ccchhhhhhhhhhccccccceEEE
Confidence 345579999999999999988888755799999999999998877655544 455667777765555443333344
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+-...+ ++ + +-.++..-|..+-.++-
T Consensus 145 Fgaes~--m~--d---Le~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 145 FGAESV--MP--D---LEDKLRTELPANTRVVA 170 (199)
T ss_pred eehHHH--Hh--h---hHHHHHhhCcCCCeEEE
Confidence 333332 22 3 33444445555555443
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.081 Score=45.68 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=76.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-----cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCC-
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPET- 228 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-----~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~- 228 (280)
.+...+|+|+|+..-++.|+..... ++..+|+|...++...+.+...- ....+.-+++|.+.- .++.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y-----~~l~v~~l~~~~~~~La~~~~~ 152 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY-----PGLEVNALCGDYELALAELPRG 152 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC-----CCCeEeehhhhHHHHHhcccCC
Confidence 3568999999999988877765322 89999999999886443332210 023455566665431 1122
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE-eccC
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-ENIA 272 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~-e~~~ 272 (280)
++==.++.-.++..+++++...|+..+...|+||-++++- |.+.
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 2333444557899999999999999999999999998885 5443
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.036 Score=51.22 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=34.8
Q ss_pred CCCCcEEEEEccchhhcCCh------------------------------------hhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 PETGRYDVIWVQWCIGHLTD------------------------------------DDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~------------------------------------~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++.++.+++++++++|++.. .|+..||+.=++-|.|||.++++=
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 55689999999999998763 135567777778899999999873
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.06 Score=48.91 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=66.4
Q ss_pred cCCCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-CCCCCCCCCcE
Q 023562 154 RNNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRY 231 (280)
Q Consensus 154 ~~~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~f 231 (280)
..+++.+|+=+|+| -|..+..+++....+|+++|.|++-++.|++.-.+. ++... -.....-.+.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~------------~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH------------VINSSDSDALEAVKEIA 230 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE------------EEEcCCchhhHHhHhhC
Confidence 35678888888887 345677777744467999999999999999875542 22221 11111111349
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+|+..-. . ..+....+.||+||.+++.-+.
T Consensus 231 d~ii~tv~-~--------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-P--------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-h--------hhHHHHHHHHhcCCEEEEECCC
Confidence 99987654 2 4667778899999999998665
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.005 Score=46.36 Aligned_cols=39 Identities=38% Similarity=0.676 Sum_probs=29.7
Q ss_pred cEEEEEccchh--hcC--ChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCI--GHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l--~~~--~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||+|+|-.+. .|+ .|+-+..+++++++.|+|||.+++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 49999987543 233 3466889999999999999999873
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.055 Score=48.02 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=60.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 227 (280)
..+++..+|+--|.|..+..+++++.. +++++|-++.+|+.|++++... ..++.+++.++.++. ..
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHHHHHHHHhcC
Confidence 566789999999999999999999864 6999999999999999998653 457888888776653 22
Q ss_pred CCcEEEEE
Q 023562 228 TGRYDVIW 235 (280)
Q Consensus 228 ~~~fDlV~ 235 (280)
.+++|.|+
T Consensus 94 i~~vDGiL 101 (314)
T COG0275 94 IGKVDGIL 101 (314)
T ss_pred CCceeEEE
Confidence 34777776
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.031 Score=41.90 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=33.8
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeC
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~ 188 (280)
..+|..+...... ..+....+|+|||+|.+.--|.+.|+. =.|+|.
T Consensus 43 AAyLi~LW~~~~~---~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~ 88 (112)
T PF07757_consen 43 AAYLIELWRDMYG---EQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA 88 (112)
T ss_pred HHHHHHHHhcccC---CCCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence 3666666665544 345668999999999998877777775 777884
|
; GO: 0008168 methyltransferase activity |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.11 Score=44.62 Aligned_cols=120 Identities=17% Similarity=0.017 Sum_probs=71.9
Q ss_pred HHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHh-cCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 142 l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~-~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
|..-+...+.+...+++.+||-+|++.|.....+..- +++ .|.+|+.|+..=...-...+. ..|+--+.-
T Consensus 141 LAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--------RtNiiPIiE 212 (317)
T KOG1596|consen 141 LAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--------RTNIIPIIE 212 (317)
T ss_pred HHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--------cCCceeeec
Confidence 3333333344445678899999999999887767654 233 799999987643332222222 244555555
Q ss_pred cCCCCC---CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--eccCC
Q 023562 220 PLQDFT---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIAR 273 (280)
Q Consensus 220 d~~~~~---~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~~ 273 (280)
|+..-. ..-.-.|+|++.-. .++....+.-++.-.||+||.|+++ .||..
T Consensus 213 DArhP~KYRmlVgmVDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisikancid 267 (317)
T KOG1596|consen 213 DARHPAKYRMLVGMVDVIFADVA----QPDQARIVALNAQYFLKNGGHFVISIKANCID 267 (317)
T ss_pred cCCCchheeeeeeeEEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEEeccccc
Confidence 654421 11134566655322 1233455666788899999999886 66643
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.13 Score=44.40 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=60.4
Q ss_pred CCccEEEeecCccHHHHHHHH-hcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC--CCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~-~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fDl 233 (280)
.+++||-+|=.--. +..++- ..+.+|+.+|+++.+++..++..+..|+ +++.+..|+.+--++ .++||+
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-------PIEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE---TTS---TTTSS-BSE
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-------ceEEEEecccccCCHHHhcCCCE
Confidence 46789999965543 333333 3455899999999999999988877643 488899998764222 379999
Q ss_pred EEcc--chhhcCChhhHHHHHHHHHHcCCCCc-EEEE
Q 023562 234 IWVQ--WCIGHLTDDDFVSFFKRAKVGLKPGG-FFVL 267 (280)
Q Consensus 234 V~~~--~~l~~~~~~d~~~~l~~~~r~LkpGG-~lii 267 (280)
+++. +.+ +-+.-|+.+....||..| ..++
T Consensus 116 f~TDPPyT~-----~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 116 FFTDPPYTP-----EGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp EEE---SSH-----HHHHHHHHHHHHTB-STT-EEEE
T ss_pred EEeCCCCCH-----HHHHHHHHHHHHHhCCCCceEEE
Confidence 9987 443 467789999999998877 4444
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.026 Score=48.13 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=63.2
Q ss_pred ccEEEeecCccHHHHHHHHhcCC----------cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN----------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~----------~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 225 (280)
.|++|+.+.+|.++..+.++.+. .|++||+.+-. . -..+.-+++|++...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P---------I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P---------IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c---------cCceEEeecccCCHhHHH
Confidence 58999999999999977766332 28899974311 1 134666788887643
Q ss_pred -----CCCCcEEEEEccch-----hhcCCh----hhHHHHHHHHHHcCCCCcEEEE
Q 023562 226 -----PETGRYDVIWVQWC-----IGHLTD----DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 226 -----~~~~~fDlV~~~~~-----l~~~~~----~d~~~~l~~~~r~LkpGG~lii 267 (280)
+..++.|+|+|-.. +|-++. +-+...|.-...+|||||.|+-
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 34468999998743 443332 1235667777899999999875
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.036 Score=49.69 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=55.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----C-C
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-E 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-~ 227 (280)
+.++...+|+--|.|..+..++++... .+.++|.++.+++.|++++... ..++.++.+++.++. . .
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-------~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-------DDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-------CTTEEEEES-GGGHHHHHHHTTT
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-------cceEEEEeccHHHHHHHHHHccC
Confidence 456779999999999999999987554 8999999999999999988653 467899998887653 2 3
Q ss_pred CCcEEEEEc
Q 023562 228 TGRYDVIWV 236 (280)
Q Consensus 228 ~~~fDlV~~ 236 (280)
..++|.|+.
T Consensus 91 ~~~~dgiL~ 99 (310)
T PF01795_consen 91 INKVDGILF 99 (310)
T ss_dssp TS-EEEEEE
T ss_pred CCccCEEEE
Confidence 357888873
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.11 Score=47.26 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=71.6
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC--C-cEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--G-RYDVI 234 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~-~fDlV 234 (280)
..+++|+=||.|.+...+.+.+++-+.++|+++..++.-+.++.. ..+...|+..+.... . .+|++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----------~~~~~~di~~~~~~~~~~~~~Dvl 71 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----------GDIILGDIKELDGEALRKSDVDVL 71 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----------CceeechHhhcChhhccccCCCEE
Confidence 358999999999999999988998999999999999999888763 344556666554221 2 78999
Q ss_pred Eccc---hhhcC------Ch--hhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQW---CIGHL------TD--DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~---~l~~~------~~--~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+... .+... .+ ..+---+.++...++| .+++.|||.
T Consensus 72 igGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~ 118 (328)
T COG0270 72 IGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVK 118 (328)
T ss_pred EeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCc
Confidence 8431 11111 11 1123445566677788 888889984
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.11 Score=41.89 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=64.4
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHH-HHHHcCcCCCCCCCCCcceeEEEccCC-CCCCCCCcEEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~-A~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~fDlV~ 235 (280)
+++++-+|...=.+-...++++..+|.-||.++--++. .+.+. .++...|+. ++....++||.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-------------ssi~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-------------SSILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-------------ccccHHHHHHHHHHhhccchhhh
Confidence 35678888886666665667788789889876422210 01111 011111111 1212237899999
Q ss_pred ccchhhcCC---------hhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 236 VQWCIGHLT---------DDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 236 ~~~~l~~~~---------~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
|..+++|+. +.--...+.++.++|||||.+++.=++..+
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 998888743 122356888999999999999998776543
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.11 Score=46.55 Aligned_cols=115 Identities=14% Similarity=0.198 Sum_probs=76.4
Q ss_pred CccEEEeecCccHHHHHHHHhc-------C--------------CcEEEEeCCHH--HHHHHHHHcCcCC----------
Q 023562 158 HLVALDCGSGIGRITKNLLIRY-------F--------------NEVDLLEPVSH--FLDAARESLAPEN---------- 204 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~-------~--------------~~v~~vD~S~~--~l~~A~~~~~~~~---------- 204 (280)
..+||-||.|.|.-...++... . -+|++||+.+. .++.....+....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4699999999997666665432 0 06999998765 4555555444430
Q ss_pred C-CCCCCCcceeEEEccCCCCCCCC-------CcEEEEEccchhhcCC---hhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 205 H-MAPDMHKATNFFCVPLQDFTPET-------GRYDVIWVQWCIGHLT---DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 205 ~-~~~~~~~~i~~~~~d~~~~~~~~-------~~fDlV~~~~~l~~~~---~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
. .......+++|.+.|+-....++ ...|+|...++++-+= ...-.+|+.++-..++||..++|+|--.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 0 11222457889999987765321 2467887776654321 1245789999999999999999998654
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.14 Score=47.40 Aligned_cols=105 Identities=21% Similarity=0.160 Sum_probs=66.5
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-----CCCCCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-----LQDFTPE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-----~~~~~~~ 227 (280)
..++.+||..|||. |..+..+++.... .+++++.++..++.+++..... .+.+...+ +.++. .
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~---------vi~~~~~~~~~~~l~~~~-~ 251 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAE---------TINFEEVDDVVEALRELT-G 251 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE---------EEcCCcchHHHHHHHHHc-C
Confidence 44667899999988 8888888877554 5999999999999998763210 11111111 11111 1
Q ss_pred CCcEEEEEccch-------h----hcC--ChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 228 TGRYDVIWVQWC-------I----GHL--TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 ~~~fDlV~~~~~-------l----~~~--~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
...+|+|+-.-. + .|. +..+....+..+.+.|+|+|.++...
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 236888876421 0 111 00122467888999999999998874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.091 Score=47.83 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=39.2
Q ss_pred CCCccEEEeecCccHHHHHHHHhc---------CCcEEEEeCCHHHHHHHHHHcCc
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~---------~~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
..+..++|+|.|.|.++..+++.. ..++..||+|++..+.=+++++.
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 346789999999999999887642 22899999999999998888876
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.13 Score=44.10 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=58.1
Q ss_pred HHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHcCcC-CCCCCCCCcceeEE
Q 023562 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFF 217 (280)
Q Consensus 141 ~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~--~~~~v~~vD~S~~~l~~A~~~~~~~-~~~~~~~~~~i~~~ 217 (280)
.|.+++.+.-+.. .++..++||||.|.--+-.-+--+ ++ +.+|.|+++..++.|+..+..+ ++ ...++..
T Consensus 63 ~laDLL~s~~g~~-~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l-----~~~I~lr 135 (292)
T COG3129 63 HLADLLASTSGQI-PGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGL-----ERAIRLR 135 (292)
T ss_pred HHHHHHHhcCCCC-CcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcch-----hhheeEE
Confidence 4455554433321 245678999999986554322222 33 6999999999999999988765 22 3334433
Q ss_pred Ec-cCC----CCCCCCCcEEEEEccchhhc
Q 023562 218 CV-PLQ----DFTPETGRYDVIWVQWCIGH 242 (280)
Q Consensus 218 ~~-d~~----~~~~~~~~fDlV~~~~~l~~ 242 (280)
.- |-. ...-..+.||+++|+--||-
T Consensus 136 ~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 136 RQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred eccCccccccccccccceeeeEecCCCcch
Confidence 32 111 11112468999999987763
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.13 Score=46.50 Aligned_cols=97 Identities=22% Similarity=0.226 Sum_probs=63.4
Q ss_pred EEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEEEcc--
Q 023562 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQ-- 237 (280)
Q Consensus 161 VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV~~~-- 237 (280)
|+|+-||.|.++..+.+.++.-+.++|+++.+++.-+.++.. .+...|+.++... ...+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEecCC
Confidence 689999999999999888888788899999999998888753 2244666665421 1358988743
Q ss_pred ---chh-h---cCChhhHHHHHH---HHHHcCCCCcEEEEEeccC
Q 023562 238 ---WCI-G---HLTDDDFVSFFK---RAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 238 ---~~l-~---~~~~~d~~~~l~---~~~r~LkpGG~lii~e~~~ 272 (280)
++. . -+.+ ....++. ++.+.++|. +++.|||.
T Consensus 69 Cq~fS~ag~~~~~~d-~r~~L~~~~~r~i~~~~P~--~~v~ENV~ 110 (315)
T TIGR00675 69 CQPFSIAGKRKGFED-TRGTLFFEIVRILKEKKPK--FFLLENVK 110 (315)
T ss_pred CcccchhcccCCCCC-chhhHHHHHHHHHhhcCCC--EEEeeccH
Confidence 111 1 1111 1112222 333445774 77889984
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.055 Score=50.11 Aligned_cols=57 Identities=7% Similarity=0.182 Sum_probs=51.3
Q ss_pred cceeEEEccCCCCC--CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 212 KATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 212 ~~i~~~~~d~~~~~--~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+++++.+++.+.. .+++++|.++..+++.+++++++.+.++++.+.++|||.+++-
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 57899999988863 4468999999999999999999999999999999999999985
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.19 Score=42.62 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=63.8
Q ss_pred CCCCccEEEeecCccHHHHHHHH-h--cCCcEEEEeCCHHHHHHHHHHcCcCC---------------------------
Q 023562 155 NNQHLVALDCGSGIGRITKNLLI-R--YFNEVDLLEPVSHFLDAARESLAPEN--------------------------- 204 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~-~--~~~~v~~vD~S~~~l~~A~~~~~~~~--------------------------- 204 (280)
...+.++-|-.||.|++.--+.- + ...+|.+.|+++.+|+.|++|+.-..
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 45677999999999987553422 2 22289999999999999999874210
Q ss_pred ---------CCCCCCCcceeEEEccCCCCC-----CCCCcEEEEEccchhhcCCh-------hhHHHHHHHHHHcCCCCc
Q 023562 205 ---------HMAPDMHKATNFFCVPLQDFT-----PETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGG 263 (280)
Q Consensus 205 ---------~~~~~~~~~i~~~~~d~~~~~-----~~~~~fDlV~~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG 263 (280)
+...+........++|+.+.. ......|+|+.---..++++ .-...++..++.+|-+++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 001111223567788887742 11234699986543333321 235679999999996566
Q ss_pred EEEEEe
Q 023562 264 FFVLKE 269 (280)
Q Consensus 264 ~lii~e 269 (280)
++.+++
T Consensus 209 VV~v~~ 214 (246)
T PF11599_consen 209 VVAVSD 214 (246)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 666643
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.46 Score=45.74 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=62.7
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc------CCCCCC-
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP------LQDFTP- 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d------~~~~~~- 226 (280)
..++.+|+-+|||. |..+...+......|+++|.++.-++.+++.-... ..++....+ +.....
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~--------v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEF--------LELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeE--------EEeccccccccccchhhhcchh
Confidence 34688999999997 44555555554447999999999999998742210 001110000 000000
Q ss_pred ---------C--CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 227 ---------E--TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 227 ---------~--~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
. -..+|+|+..-....-+ ....+.+++.+.+||||.++..
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~--aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKP--APKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCccc--CcchHHHHHHHhcCCCCEEEEE
Confidence 0 13589998765432211 1123359999999999998876
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.23 Score=48.95 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=65.1
Q ss_pred ccEEEeecCccHHHHHHHHh----cCC-cEEEEeCCHHHHHHHHHHcCcCCCC---CCCCCcceeEEEccCCCCCCCC--
Q 023562 159 LVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHM---APDMHKATNFFCVPLQDFTPET-- 228 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~----~~~-~v~~vD~S~~~l~~A~~~~~~~~~~---~~~~~~~i~~~~~d~~~~~~~~-- 228 (280)
..|+-+|+|-|-+....++. +.. +|.+||-|+..+.....+......+ ....+..++++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999876655443 222 7999999966554444442221111 0112456999999999985331
Q ss_pred ---------CcEEEEEccchhhcCChhhH-HHHHHHHHHcCCC----CcE
Q 023562 229 ---------GRYDVIWVQWCIGHLTDDDF-VSFFKRAKVGLKP----GGF 264 (280)
Q Consensus 229 ---------~~fDlV~~~~~l~~~~~~d~-~~~l~~~~r~Lkp----GG~ 264 (280)
+++|+||+- .|.-|.|.++ .+-|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 379999863 3344445444 4566666666665 776
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.08 Score=47.38 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=64.4
Q ss_pred cEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCCCcEEEEEc
Q 023562 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVIWV 236 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fDlV~~ 236 (280)
+++|+=||.|.++..+.+.++..+.++|+++.+.+.-+.++. .....|+.++. .+. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------~~~~~Di~~~~~~~l~~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------EVICGDITEIDPSDLPK-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------ccccccccccccccccc-cceEEEe
Confidence 699999999999999999998899999999999999988873 45777887765 222 5999984
Q ss_pred cc---hhhc------CCh--hhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 237 QW---CIGH------LTD--DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 237 ~~---~l~~------~~~--~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.. .+.. +.+ ..+-.-+-++.+.++|. +++.|||.
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk--~~~~ENV~ 112 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPK--YFLLENVP 112 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-S--EEEEEEEG
T ss_pred ccCCceEeccccccccccccchhhHHHHHHHhhccce--EEEecccc
Confidence 31 1111 111 11222333344556884 45669984
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.67 Score=44.54 Aligned_cols=109 Identities=14% Similarity=0.042 Sum_probs=69.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-----CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-----~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 225 (280)
+.+..+|.|-.||+|.+.....+.. -..+.|.|+++.....|+.+.--.+... ++....+|-..-+
T Consensus 184 ~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----~~~i~~~dtl~~~~~~~ 258 (489)
T COG0286 184 PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----DANIRHGDTLSNPKHDD 258 (489)
T ss_pred CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----cccccccccccCCcccc
Confidence 3455699999999998766544331 1359999999999999998876654421 2233333322111
Q ss_pred -CCCCcEEEEEccchhh---cCC-------------------h-hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 226 -PETGRYDVIWVQWCIG---HLT-------------------D-DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~---~~~-------------------~-~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
...++||.|+++--+. +.. . ...-.+++.+...|+|||...|.
T Consensus 259 ~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 259 KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 1336799998773221 110 0 12268999999999998865543
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.92 Score=39.83 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=75.7
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCC-HHHHHHHHHHcCcCCCCCCCCCcceeEEE
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFC 218 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S-~~~l~~A~~~~~~~~~~~~~~~~~i~~~~ 218 (280)
.++.+.+...+. . ....|+.+|||-=.-...+.. ...+..+|++ |++++.-++.+...+. ....+..++.
T Consensus 68 r~~D~~i~~~~~---~-g~~qvV~LGaGlDTr~~Rl~~--~~~~~~~EvD~P~v~~~K~~~l~~~~~---~~~~~~~~v~ 138 (260)
T TIGR00027 68 RFFDDFLLAAVA---A-GIRQVVILGAGLDTRAYRLPW--PDGTRVFEVDQPAVLAFKEKVLAELGA---EPPAHRRAVP 138 (260)
T ss_pred HHHHHHHHHHHh---c-CCcEEEEeCCccccHHHhcCC--CCCCeEEECCChHHHHHHHHHHHHcCC---CCCCceEEec
Confidence 445555544332 1 234699999998665554432 2234455543 4466655566654221 1235677888
Q ss_pred ccCCC-CC-------CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 219 VPLQD-FT-------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 219 ~d~~~-~~-------~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.|+.+ +. +.+..--++++-.++.|+++++...+++.+.+...||+.+++.
T Consensus 139 ~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 139 VDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFD 196 (260)
T ss_pred cCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 88751 11 1123445777889999999999999999999999899988875
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.61 Score=42.61 Aligned_cols=108 Identities=18% Similarity=0.089 Sum_probs=70.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-----cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-----~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 225 (280)
..++.+|||+.+.+|.-+..+++.... .|.+-|.++.-+........... ..+..+...++..++
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------SPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------Ccceeeecccceecccccc
Confidence 678899999999999999989876442 59999999988887776664422 123333334443332
Q ss_pred -----CCCCcEEEEEcc-----c-hhhcCCh--------------hhH-HHHHHHHHHcCCCCcEEEEE
Q 023562 226 -----PETGRYDVIWVQ-----W-CIGHLTD--------------DDF-VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 226 -----~~~~~fDlV~~~-----~-~l~~~~~--------------~d~-~~~l~~~~r~LkpGG~lii~ 268 (280)
.....||=|++- . ++.+.++ ..+ ..++.+..++||+||.++.+
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 122468877632 2 1222111 012 36888999999999999876
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.17 Score=46.24 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=73.1
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~ 235 (280)
+.+|+|.=+|+|.=++.++..... .|+.-|+||.+.+.+++|...+. ..+...+..|...+- .....||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~------~~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS------GEDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC------cccceeecchHHHHHHhcCCCccEEe
Confidence 578999999999888877766444 79999999999999999988751 233444555654442 1136788874
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.- -+. ....|+..+.+.++.||++.++-
T Consensus 127 iD----PFG--SPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 127 ID----PFG--SPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred cC----CCC--CCchHHHHHHHHhhcCCEEEEEe
Confidence 32 122 33479999999999999999974
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.66 Score=44.21 Aligned_cols=45 Identities=18% Similarity=0.010 Sum_probs=39.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~ 201 (280)
...+++|+=||.|.+...+-..++..|.++|+++.+.+.-+.++.
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~ 131 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWY 131 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcC
Confidence 356999999999999999988888888999999999988888763
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.25 Score=44.37 Aligned_cols=102 Identities=18% Similarity=0.086 Sum_probs=65.4
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCCC------C
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF------T 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~~------~ 225 (280)
.+.+.+||-+|+|+ |..+...++. +..+|..+|+++.-|+.|++ +..... ...... +..++ .
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~--------~~~~~~~~~~~~~~~v~~~ 237 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT--------DPSSHKSSPQELAELVEKA 237 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE--------eeccccccHHHHHHHHHhh
Confidence 56788999999997 4455544443 55599999999999999999 433211 000000 11111 0
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
.....+|+.+.+..+ +..++.....+|+||.+++..+-..
T Consensus 238 ~g~~~~d~~~dCsG~--------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 238 LGKKQPDVTFDCSGA--------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred ccccCCCeEEEccCc--------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 122347877765443 2567777889999999888876543
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.068 Score=47.34 Aligned_cols=106 Identities=23% Similarity=0.175 Sum_probs=69.1
Q ss_pred CCccEEEeecCccHHHH-HHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~-~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.+..|+|+=+|.|+++. .+...+...|.++|.+|..++..+.++..++. ..+...+.+|-.. +-+....|-|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V-----~~r~~i~~gd~R~-~~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV-----MDRCRITEGDNRN-PKPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch-----HHHHHhhhccccc-cCccccchhee
Confidence 34689999999999999 67777888999999999999999998877543 2223333344322 22235666665
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCC-Cc-EEEEEeccCCC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKP-GG-FFVLKENIARS 274 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~Lkp-GG-~lii~e~~~~~ 274 (280)
.- .+|..+ +-.-.+.++||| || ++-|.||+...
T Consensus 268 LG----LlPSse--~~W~~A~k~Lk~eggsilHIHenV~~s 302 (351)
T KOG1227|consen 268 LG----LLPSSE--QGWPTAIKALKPEGGSILHIHENVKDS 302 (351)
T ss_pred ec----cccccc--cchHHHHHHhhhcCCcEEEEecccccc
Confidence 43 233211 333445566666 44 66677998643
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.7 Score=42.31 Aligned_cols=97 Identities=16% Similarity=0.076 Sum_probs=62.7
Q ss_pred CccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cC-CC-CCCC-CCcE
Q 023562 158 HLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QD-FTPE-TGRY 231 (280)
Q Consensus 158 ~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~-~~-~~~~-~~~f 231 (280)
+.+|+=+|||+ |.++..+++. +...|..+|.++.-++.|++....... ..... +. .. .... ...+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~---------~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV---------VNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe---------ecCccccHHHHHHHHhCCCCC
Confidence 34899999997 5555555554 445899999999999999996543210 00001 00 00 0111 1368
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+++-+-. ....+..+.++++|||.+.+.-..
T Consensus 240 D~vie~~G--------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 240 DVVIEAVG--------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CEEEECCC--------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 99985533 115889999999999999886433
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.19 Score=42.44 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=54.5
Q ss_pred CCccEEEeecCccHHHHHHHHh---c-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------
Q 023562 157 QHLVALDCGSGIGRITKNLLIR---Y-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~---~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------ 225 (280)
+|..|+|+|.-.|.-+..++.. . . .+|.++|+....... ..++.. +...+++++.+|-.+..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~h-----p~~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESH-----PMSPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TTEEEEES-SSSTHHHHTSG
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhc-----cccCceEEEECCCCCHHHHHHHH
Confidence 4679999999999888766542 1 2 389999985333321 111111 12468999999876542
Q ss_pred -C-CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 226 -P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 226 -~-~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
. ......+|+.-.. |.. +...+.|+....+++||+++++-|.+
T Consensus 105 ~~~~~~~~vlVilDs~--H~~-~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 105 ELASPPHPVLVILDSS--HTH-EHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SS----SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HhhccCCceEEEECCC--ccH-HHHHHHHHHhCccCCCCCEEEEEecc
Confidence 1 0123345443221 211 25567888899999999999886543
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.088 Score=45.33 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=46.0
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH---cCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEEE
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES---LAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~---~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDlV 234 (280)
.+|||+-+|-|.-+.-++..|. +|+++|-||.+-...+.- .............+++.+.+|..++ ..++.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4899999999999997776665 699999999876555432 2111100001124789999998875 3445799999
Q ss_pred Eccchhh
Q 023562 235 WVQWCIG 241 (280)
Q Consensus 235 ~~~~~l~ 241 (280)
+.--.|.
T Consensus 156 Y~DPMFp 162 (234)
T PF04445_consen 156 YFDPMFP 162 (234)
T ss_dssp EE--S--
T ss_pred EECCCCC
Confidence 9654433
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.41 Score=42.51 Aligned_cols=58 Identities=17% Similarity=0.051 Sum_probs=45.7
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCc
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
..++.+++... ..++..|||.=||+|..+.... +...+..|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILAS-----SNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 46666666532 3577899999999999988555 4444699999999999999999754
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.78 Score=34.88 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=59.7
Q ss_pred CccEEEeecCcc-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEEE
Q 023562 158 HLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G-~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV~ 235 (280)
.++|+++|-|.= ..+..|.+++++ |+++|+++. +. +..+++...|+++-... -...|+|+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~-------~a----------~~g~~~v~DDitnP~~~iY~~A~lIY 75 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFD-VLATDINEK-------TA----------PEGLRFVVDDITNPNISIYEGADLIY 75 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCc-EEEEecccc-------cC----------cccceEEEccCCCccHHHhhCcccee
Confidence 459999998876 356667777876 999999876 11 23478899998774321 13578888
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (280)
+... +++++..+-.+++.++-.-+|
T Consensus 76 SiRp-----ppEl~~~ildva~aVga~l~I 100 (129)
T COG1255 76 SIRP-----PPELQSAILDVAKAVGAPLYI 100 (129)
T ss_pred ecCC-----CHHHHHHHHHHHHhhCCCEEE
Confidence 8654 468888888888876554443
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.65 Score=40.43 Aligned_cols=122 Identities=14% Similarity=0.162 Sum_probs=66.9
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHH---Hhc-C--CcEEEEeCC------------------------
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL---IRY-F--NEVDLLEPV------------------------ 189 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~---~~~-~--~~v~~vD~S------------------------ 189 (280)
..|..++...+. ..-++.|+|+||-.|..+..+. +.. . .++.++|.=
T Consensus 60 ~~L~~~~~~v~~---~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~ 136 (248)
T PF05711_consen 60 DNLYQAVEQVLA---EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNG 136 (248)
T ss_dssp HHHHHHHHHCCH---TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCH
T ss_pred HHHHHHHHHHHh---cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhccc
Confidence 344555544332 2345789999999998766442 221 1 156666521
Q ss_pred --HHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C-CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEE
Q 023562 190 --SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (280)
Q Consensus 190 --~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (280)
...++..++++...++. ..++.++.+.+.+. + .+..++-++.+-.-+. +.....|..++..|.|||+|
T Consensus 137 ~~~~s~e~V~~n~~~~gl~----~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 137 YLAVSLEEVRENFARYGLL----DDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp HCTHHHHHHHHCCCCTTTS----STTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEE
T ss_pred ccccCHHHHHHHHHHcCCC----cccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEE
Confidence 12466666776654431 35789999987553 2 1223444443322111 13467899999999999999
Q ss_pred EEEeccC
Q 023562 266 VLKENIA 272 (280)
Q Consensus 266 ii~e~~~ 272 (280)
+|.|...
T Consensus 209 i~DDY~~ 215 (248)
T PF05711_consen 209 IFDDYGH 215 (248)
T ss_dssp EESSTTT
T ss_pred EEeCCCC
Confidence 9988654
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.11 Score=48.93 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=74.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~ 229 (280)
.++.+|||.=|++|.-++..+.... ..|++.|.++..++..+++...++. ...+.....|+.-+- ....
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----EDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----hhhcccccchHHHHHHhcccccc
Confidence 4567999999999999888887643 3899999999999999999877533 233444445543321 1136
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.||+|-.- -+. ....||..+.+.++.||+++++
T Consensus 183 ~FDvIDLD----PyG--s~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 183 FFDVIDLD----PYG--SPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ccceEecC----CCC--CccHHHHHHHHHhhcCCEEEEE
Confidence 79988543 111 2237999999999999999997
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.59 Score=42.35 Aligned_cols=96 Identities=21% Similarity=0.130 Sum_probs=57.0
Q ss_pred CCccEEEeecC-ccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG-~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
++.+||-.||| .|..+..+++. +...|.++|.+++-++.+++.-... -++....++.++....+.+|+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK---------LVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE---------EecCCcccHHHHhccCCCCCEE
Confidence 56788888874 23344445544 4446999999999999988742211 0111111222221112358888
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+-.-. . ...+..+.+.|++||.+++.-
T Consensus 240 id~~G-----~---~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 FEVSG-----H---PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EECCC-----C---HHHHHHHHHHhhcCCEEEEEc
Confidence 75422 1 146677888999999998864
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.37 Score=40.47 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=39.5
Q ss_pred hHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 023562 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (280)
Q Consensus 138 ~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~ 198 (280)
+..++.+++... ..++..|||.=||+|..+....+.+- +..|+|+++...+.|++
T Consensus 177 P~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 346666666543 34678999999999999986665544 69999999999998874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=92.11 E-value=1.5 Score=39.00 Aligned_cols=93 Identities=24% Similarity=0.188 Sum_probs=60.2
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-C-----CCC
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-----TPE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-----~~~ 227 (280)
..++.+||..|+| .|..+..+++....+|+.++.++...+.+++.-.. .....-.. . ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGAD-------------EVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC-------------EEEcCCCcCHHHHHHHhc
Confidence 3456788888876 47777777776555699999999999888653211 11111110 0 112
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
...+|+|+.+... ...+..+.+.|+++|.++..
T Consensus 230 ~~~~D~vid~~g~--------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 230 GGGFDVIFDFVGT--------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCCceEEEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 3579988754221 14677888999999999875
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.075 Score=49.21 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=51.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 224 (280)
.+++..|.|+-||.|-++..++.++ ..|++.|.++++++..+.+++.+.+. ..++..+..|..++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccc----hhheeeecccHHHH
Confidence 3467889999999999999998887 46999999999999999998875431 22366666665443
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.7 Score=35.29 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=58.5
Q ss_pred CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-----C-CCCCcEEEEEccchh
Q 023562 167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----T-PETGRYDVIWVQWCI 240 (280)
Q Consensus 167 G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~fDlV~~~~~l 240 (280)
|.|..+..+++....+|+++|.++.-++.+++.-.. .++..+-.++ . .....+|+|+-+-.-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~------------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD------------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES------------EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc------------ccccccccccccccccccccccceEEEEecCc
Confidence 568888888887667899999999999999875422 1111111111 0 122479999865331
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 241 ~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
. ..++....+|+|+|.+++.-...
T Consensus 69 ------~--~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 ------G--DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ------H--HHHHHHHHHEEEEEEEEEESSTS
T ss_pred ------H--HHHHHHHHHhccCCEEEEEEccC
Confidence 1 58888999999999999875443
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.92 Score=38.98 Aligned_cols=58 Identities=21% Similarity=0.153 Sum_probs=44.7
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCc
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
..++..++... ..++..|||.=||+|..+....+.+. +..|+|+++...+.+.+++..
T Consensus 150 ~~l~~~~i~~~-----s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 150 VTSLQPLIESF-----THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHHHh-----CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 35566555432 34677999999999999886665544 699999999999999988764
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=90.97 E-value=1.2 Score=36.43 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=56.5
Q ss_pred eecCccHHHHHHHHhcC-C-cEE--EEeCCHHHHHHHH---HHcCcCCCCCCCCCccee-EEEccCCCCC----CCCCcE
Q 023562 164 CGSGIGRITKNLLIRYF-N-EVD--LLEPVSHFLDAAR---ESLAPENHMAPDMHKATN-FFCVPLQDFT----PETGRY 231 (280)
Q Consensus 164 lGcG~G~~s~~l~~~~~-~-~v~--~vD~S~~~l~~A~---~~~~~~~~~~~~~~~~i~-~~~~d~~~~~----~~~~~f 231 (280)
||=|.=.++..|++... . +++ ..|..+...+.-. .++.... ...+. .+..|++.+. ...++|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~------~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR------ELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh------hcCCccccCCCCCcccccccccCCcC
Confidence 45556566777776644 2 444 4454444433322 2222210 11122 2445666654 234789
Q ss_pred EEEEccchhhcCC------h-------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIWVQWCIGHLT------D-------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~------~-------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|.|+-++- |.. . .-+..|++.+.++|+++|.|.++
T Consensus 77 DrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 77 DRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred CEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99998865 333 1 12578999999999999999887
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.56 Score=43.09 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~ 198 (280)
..-..|+|+|.|.|.++..+.-++.-.|.+||-|....+.|+.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3446899999999999997766655589999999777776654
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=90.94 E-value=2.9 Score=37.73 Aligned_cols=92 Identities=13% Similarity=-0.055 Sum_probs=57.5
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+||-.|+| .|..+..+++....+|++++.++.-++.+++.-... ..+..+. ..+.+|+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~--------------vi~~~~~--~~~~~d~ 226 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS--------------AGGAYDT--PPEPLDA 226 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce--------------ecccccc--CcccceE
Confidence 4567799999864 344445555554446999999999888887753321 0111111 1135787
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++..... ...+....+.|++||.+++.-.
T Consensus 227 ~i~~~~~--------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAPA--------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCCc--------HHHHHHHHHhhCCCcEEEEEec
Confidence 6543321 1467788899999999988644
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.60 E-value=2.4 Score=36.16 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=60.4
Q ss_pred CCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-C-CCCCCcEE
Q 023562 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD 232 (280)
.++.+||..|+|. |..+..+++....+|.+++.++...+.++...... .++....+... . ....+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH---------VIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce---------eccCCcCCHHHHHHHhcCCCCC
Confidence 4677999999985 76777777665567999999998888876542110 00000000000 0 01125789
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|+.+..- . ..+..+.+.|+++|.++....
T Consensus 204 ~vi~~~~~------~--~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 204 VVIDAVGG------P--ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEEECCCC------H--HHHHHHHHhcccCCEEEEEcc
Confidence 99854321 1 356677888999999987643
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.6 Score=39.63 Aligned_cols=96 Identities=24% Similarity=0.132 Sum_probs=56.4
Q ss_pred CCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeC---CHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcE
Q 023562 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEP---VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (280)
Q Consensus 156 ~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~---S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 231 (280)
.++.+||-+|+|. |.++..+++....+|++++. ++.-++.+++.-... +.....++.+.. ..+.+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~----------v~~~~~~~~~~~-~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY----------VNSSKTPVAEVK-LVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE----------ecCCccchhhhh-hcCCC
Confidence 3567899998864 45556566554436999986 677777776532110 111111111101 12468
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|+|+-.-. . . ..+....+.|++||.+++.-.
T Consensus 240 d~vid~~g-----~-~--~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 240 DLIIEATG-----V-P--PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CEEEECcC-----C-H--HHHHHHHHHccCCcEEEEEec
Confidence 88876532 1 1 367788899999999987643
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.97 Score=45.09 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=63.7
Q ss_pred CCccEEEeecCccHHHHHHHHhc-------C-----C-cEEEEeCC---HHHHHHHHH-----------HcCcC-----C
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-------F-----N-EVDLLEPV---SHFLDAARE-----------SLAPE-----N 204 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-------~-----~-~v~~vD~S---~~~l~~A~~-----------~~~~~-----~ 204 (280)
+..+|+|+|=|+|......++.. . . +++.+|.. .+.+..+-+ ..... +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 44799999999998766555322 2 1 67888853 333333322 11110 1
Q ss_pred CC---CCCCCcceeEEEccCCCCCC-CCCcEEEEEcc-chhhcCChhhH-HHHHHHHHHcCCCCcEEEE
Q 023562 205 HM---APDMHKATNFFCVPLQDFTP-ETGRYDVIWVQ-WCIGHLTDDDF-VSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 205 ~~---~~~~~~~i~~~~~d~~~~~~-~~~~fDlV~~~-~~l~~~~~~d~-~~~l~~~~r~LkpGG~lii 267 (280)
+. ...-...++.+.+|+.+.-. -...||+++.- ++-..-+ +-+ ..+++.++++++|||.+.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np-~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNP-DMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccCh-hhccHHHHHHHHHHhCCCCEEEE
Confidence 00 00012355677778765321 12579999876 3333322 222 6899999999999999873
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.25 Score=43.90 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=37.8
Q ss_pred ceeEEEccCCCC--CCCCCcEEEEEcc--chh--hc--C----Chh----hHHHHHHHHHHcCCCCcEEEEE
Q 023562 213 ATNFFCVPLQDF--TPETGRYDVIWVQ--WCI--GH--L----TDD----DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 213 ~i~~~~~d~~~~--~~~~~~fDlV~~~--~~l--~~--~----~~~----d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+..++++|..++ ..++++||+|++. +.+ .+ . ... -+..++..+.++|||||.|++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456778887664 2456799999986 221 10 0 001 1357999999999999999874
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=89.64 E-value=2.5 Score=31.54 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=55.6
Q ss_pred cCccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcEEEEEccc
Q 023562 166 SGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDVIWVQW 238 (280)
Q Consensus 166 cG~G~~s~~l~~~---~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fDlV~~~~ 238 (280)
||.|.++..+++. ....|+.+|.++..++.+++.. ..++.+|..+.. ..-.++|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-------------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-------------VEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-------------SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-------------cccccccchhhhHHhhcCccccCEEEEcc
Confidence 6777777777653 3336999999999998887653 567888887653 2235788777654
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
. +++....+....+.+.|...++..
T Consensus 71 ~-----~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 71 D-----DDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp S-----SHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred C-----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 3 234344555666777787777664
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.61 E-value=1.6 Score=39.24 Aligned_cols=95 Identities=22% Similarity=0.236 Sum_probs=57.5
Q ss_pred CCccEEEeecCc-cHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~-G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
++.+||-.|||. |..+..+++.. ...+++++.++...+.+++.-.. .+ +.....++..+....+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~-~v--------i~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD-ET--------VNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC-EE--------EcCCchhhhhhhccCCCccEE
Confidence 567888888775 66666666654 33689999999988876653211 00 110101111222222458999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+.+... ...++.+.+.|+++|.++..
T Consensus 236 ld~~g~--------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEASGA--------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 865331 13567788999999998865
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=88.28 E-value=7.4 Score=33.06 Aligned_cols=118 Identities=20% Similarity=0.226 Sum_probs=70.0
Q ss_pred chHHHHHHHHhccCCCccCCCCccEEEeecCccH--HHHHHH--Hh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCC
Q 023562 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGR--ITKNLL--IR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (280)
Q Consensus 137 ~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~--~s~~l~--~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~ 211 (280)
...+||..+... .+...+++..|+-|. .+..|+ .+ -..++.+|-+.+.-+...++.+...++ .
T Consensus 28 ~~aEfISAlAAG-------~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----~ 95 (218)
T PF07279_consen 28 GVAEFISALAAG-------WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----S 95 (218)
T ss_pred CHHHHHHHHhcc-------ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----c
Confidence 445677766642 344678999766542 344443 33 222688888888877777777765443 3
Q ss_pred cceeEEEccC-CCCCCCCCcEEEEEccchhhcCChhhHH-HHHHHHHHcCCCCcEEEEEeccCC
Q 023562 212 KATNFFCVPL-QDFTPETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 212 ~~i~~~~~d~-~~~~~~~~~fDlV~~~~~l~~~~~~d~~-~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
..++|+.++- +++...-...|+++...-. .+.. .+|+.+. +.|.|-+++..|...
T Consensus 96 ~~vEfvvg~~~e~~~~~~~~iDF~vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 96 DVVEFVVGEAPEEVMPGLKGIDFVVVDCKR-----EDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred ccceEEecCCHHHHHhhccCCCEEEEeCCc-----hhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 4467887763 3332222467887754331 2444 5555433 567789999888765
|
The function of this family is unknown. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.83 E-value=3.2 Score=37.57 Aligned_cols=92 Identities=18% Similarity=0.093 Sum_probs=55.8
Q ss_pred CCCccEEEeecCc-cHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 156 NQHLVALDCGSGI-GRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~-G~~s~~l~~~--~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
.++.+||-+|||. |.++..++++ +..+|+++|.++.-++.+++ +... +. . .++. +...+|
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~------------~~-~--~~~~-~~~g~d 224 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADET------------YL-I--DDIP-EDLAVD 224 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCce------------ee-h--hhhh-hccCCc
Confidence 4577999999754 2334445554 34479999999988888865 2110 00 0 1111 112488
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|+-.-. . ......+....++|++||.+++.-
T Consensus 225 ~viD~~G--~---~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 225 HAFECVG--G---RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EEEECCC--C---CccHHHHHHHHHhCcCCcEEEEEe
Confidence 8874322 1 012357888889999999998764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.24 E-value=1.4 Score=39.64 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=68.2
Q ss_pred CCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.+.+|.-+|.|. |..+..++.-....|+.+|+|..-+......+.. +++..-.....+...-.++|+++
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----------rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----------RVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----------eeEEEEcCHHHHHHHhhhccEEE
Confidence 456888899886 5566666655445799999998888777666533 45566555544443335789998
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
..-.+--.. ...-+.+++.+.||||+.|+=
T Consensus 237 gaVLIpgak--aPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 237 GAVLIPGAK--APKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEecCCC--CceehhHHHHHhcCCCcEEEE
Confidence 764443333 344688899999999998763
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.48 E-value=0.68 Score=39.46 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=46.2
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 224 (280)
..-|.++|.|+|.+++.+++.+..++..|+.++..+.-.+...+.. ..+..++..|+..+
T Consensus 51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa-------~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA-------PGKLRIHHGDVLRF 110 (326)
T ss_pred cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC-------CcceEEecccccee
Confidence 4579999999999999999998889999999998887766554432 23456666666443
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=86.45 E-value=2 Score=41.38 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=59.9
Q ss_pred CCCccEEEeecCcc-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCC------------
Q 023562 156 NQHLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ------------ 222 (280)
Q Consensus 156 ~~~~~VLDlGcG~G-~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~------------ 222 (280)
.++.+|+-+|||.= ..+..++......|+++|.++.-++.++.. .. +++..+..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l-Ga------------~~v~v~~~e~g~~~~gYa~~ 228 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-GA------------EFLELDFKEEGGSGDGYAKV 228 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC------------eEEeccccccccccccceee
Confidence 45689999999875 444445544344699999999988888763 21 11111110
Q ss_pred ---C--------CCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 223 ---D--------FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 223 ---~--------~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+ +...-..+|+|+..-.+.--+ ...-+.+++.+.+|||+.++-
T Consensus 229 ~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~--aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 229 MSEEFIAAEMELFAAQAKEVDIIITTALIPGKP--APKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred cCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC--CCeeehHHHHhhCCCCCEEEE
Confidence 0 111114689997765433322 222467788999999998763
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=85.94 E-value=1.7 Score=36.24 Aligned_cols=102 Identities=16% Similarity=0.072 Sum_probs=68.5
Q ss_pred CCccEEEeecCccHHHHHHHHh---cC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------
Q 023562 157 QHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~---~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------ 225 (280)
++..|+++|.-.|..+..++.. .. -.|.++|++-..++.+... ...+.|+.++-.+..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p~i~f~egss~dpai~eqi~ 137 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VPDILFIEGSSTDPAIAEQIR 137 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CCCeEEEeCCCCCHHHHHHHH
Confidence 4568999999999888877653 22 1799999987766544332 245889998766542
Q ss_pred -CCCCcEEEEE-ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 226 -PETGRYDVIW-VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 226 -~~~~~fDlV~-~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.. +.|--|+ |-.+-|++. ..-+.++.+..+|.-|-++++-|.+.
T Consensus 138 ~~~-~~y~kIfvilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 138 RLK-NEYPKIFVILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred HHh-cCCCcEEEEecCCchHH--HHHHHHHHhhhHhhcCceEEEecccc
Confidence 11 1222333 335555544 56678888889999999988876553
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.90 E-value=3.6 Score=37.42 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=60.5
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCC-C-CCCCC
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~ 229 (280)
..++.+||=.|+ |.|..+..+++....+|.+++.++.-.+.+++.+... .-++.... ++.+ + ....+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~--------~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD--------EAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC--------EEEECCCcccHHHHHHHHCCC
Confidence 456778999987 4778888787765556999999998888776433221 11111110 1110 0 01123
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.+|+|+-+-. . ..+..+.+.|++||.+++.-
T Consensus 228 gvD~v~d~vG-------~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNVG-------G--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCCEEEEEC
Confidence 6898875322 1 35677888999999998753
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=85.80 E-value=0.86 Score=39.15 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=32.9
Q ss_pred eEEEccCCCC--CCCCCcEEEEEcc--chhh--c-----CCh----hhHHHHHHHHHHcCCCCcEEEE
Q 023562 215 NFFCVPLQDF--TPETGRYDVIWVQ--WCIG--H-----LTD----DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 215 ~~~~~d~~~~--~~~~~~fDlV~~~--~~l~--~-----~~~----~d~~~~l~~~~r~LkpGG~lii 267 (280)
+++++|..+. .++++++|+|+.. +.+. + +.. +-+..++.+++|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3455555443 3556788888866 2111 0 000 1235789999999999998876
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=85.55 E-value=2.7 Score=39.48 Aligned_cols=87 Identities=13% Similarity=-0.072 Sum_probs=53.1
Q ss_pred CCCccEEEeecCccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~-~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|+-+|||+=. .....++....+|+++|.++.-++.|+..-. +.. ++.+.- ..+|+|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~-------------~~~--~~~e~v---~~aDVV 261 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY-------------EVM--TMEEAV---KEGDIF 261 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC-------------EEc--cHHHHH---cCCCEE
Confidence 357899999999743 3333333323379999999988877765311 111 111111 356998
Q ss_pred EccchhhcCChhhHHHHHHH-HHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKR-AKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~-~~r~LkpGG~lii~ 268 (280)
+..-. . ..++.. ..+.+|+||+++..
T Consensus 262 I~atG-------~-~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 262 VTTTG-------N-KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred EECCC-------C-HHHHHHHHHhcCCCCcEEEEe
Confidence 86532 1 134554 48899999999765
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=85.45 E-value=7.5 Score=33.59 Aligned_cols=93 Identities=17% Similarity=-0.002 Sum_probs=56.7
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCc-EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~-v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+||-.|||. |..+..+++....+ |.+++.+++.++.+++.-..... ... .. .. .....+|
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~--------~~~-~~---~~-~~~~~~d 161 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPV--------AAD-TA---DE-IGGRGAD 161 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccc--------ccc-ch---hh-hcCCCCC
Confidence 45667888888765 55666666654445 99999999988877764211000 000 00 01 1224689
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|+..-.. . ..+....+.|+++|.++..
T Consensus 162 ~vl~~~~~------~--~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 162 VVIEASGS------P--SALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEEEccCC------h--HHHHHHHHHhcCCcEEEEE
Confidence 88754221 1 3667778889999998865
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=85.29 E-value=2.8 Score=34.48 Aligned_cols=94 Identities=10% Similarity=0.050 Sum_probs=55.0
Q ss_pred ccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---------CCC
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PET 228 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~ 228 (280)
..|+.+|||-=.....+...... .+.=+|. |.+++.-++.++..+. ....+.+++.+|+.+.. +..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGA---RPPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHH---HHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcc---cCCcceeEEeccccchhhHHHHHHhCCCC
Confidence 37999999998887777765322 4555553 4455555555444210 00123567888887531 223
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHH
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAK 256 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~ 256 (280)
..--++++-.++.|+++++...+++.++
T Consensus 156 ~~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 156 DRPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp TSEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CCCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 4567788889999999988888888763
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=84.55 E-value=8.9 Score=34.83 Aligned_cols=97 Identities=16% Similarity=-0.034 Sum_probs=56.6
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC----CCCCCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~----~~~~~~~ 228 (280)
..++.+||-.|||. |..+..+++.... .|+++|.++.-++.+++.-.. .-++....+. .+. ...
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~---------~~i~~~~~~~~~~i~~~-~~~ 243 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGAT---------HTVNSSGTDPVEAIRAL-TGG 243 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---------eEEcCCCcCHHHHHHHH-hCC
Confidence 44677899888743 4445555555433 599999999999988654211 0011111111 011 112
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
..+|+|+-.-. . ...+....+.+++||.+++.-
T Consensus 244 ~g~d~vid~~g-----~---~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 244 FGADVVIDAVG-----R---PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCCEEEECCC-----C---HHHHHHHHHHhccCCEEEEEC
Confidence 35888875322 1 135666778999999998764
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=84.55 E-value=8.8 Score=34.12 Aligned_cols=96 Identities=21% Similarity=0.094 Sum_probs=58.2
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+||-.||| .|..+..+++....+|++++.++..++.+++.-... -+.....+... .. .+.+|+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~-~~-~~~~d~ 228 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADE---------VVDSGAELDEQ-AA-AGGADV 228 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcE---------EeccCCcchHH-hc-cCCCCE
Confidence 4456789889887 677777677664446999999999988885432110 00000000000 01 145888
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++....- ...+..+.+.|+++|.++...
T Consensus 229 vi~~~~~--------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVVS--------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCCc--------HHHHHHHHHhcccCCEEEEEC
Confidence 8754221 135677788999999888753
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=84.23 E-value=9.7 Score=33.86 Aligned_cols=95 Identities=20% Similarity=0.134 Sum_probs=57.5
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CCCC
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~~-v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~ 228 (280)
..++.+||-.|+| .|..+..+++....+ +.+++.+++..+.+++.-.. .++..+-.++ ....
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT------------ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe------------EEecCCCCCHHHHHHhcC
Confidence 4466789999865 255666666654444 89999999988887543211 1111110010 1123
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
..+|+|+.+..- ...+..+.+.|+++|.++...
T Consensus 225 ~~vd~v~~~~~~--------~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 225 YGFDVVIEATGV--------PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCcEEEECCCC--------hHHHHHHHHHHhcCCEEEEEe
Confidence 568999864220 146777788899999998753
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=84.17 E-value=6.7 Score=36.33 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=63.9
Q ss_pred CCCccEEEeecCccHH----HHHHHHh--cCC--cEEEEeC----CHHHHHHHHHHcCcCCCCCCCCCcceeEEEc---c
Q 023562 156 NQHLVALDCGSGIGRI----TKNLLIR--YFN--EVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCV---P 220 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~----s~~l~~~--~~~--~v~~vD~----S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~---d 220 (280)
.+..+|+|+|.|.|.- ...|+.+ ++. +||+|+. +..-++.+.+++..-. ...+...+|... +
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA---~~lgv~fef~~v~~~~ 185 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFA---RSLGVPFEFHPVVVES 185 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHH---HHcCccEEEEecccCc
Confidence 4567899999999953 3333433 222 8999999 7777877776654321 011233444442 3
Q ss_pred CCCCC-----CCCCcEEEEEccchhhcCChh-----h-HHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 221 LQDFT-----PETGRYDVIWVQWCIGHLTDD-----D-FVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 221 ~~~~~-----~~~~~fDlV~~~~~l~~~~~~-----d-~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++++. ..++..=+|-+.+.+||+.++ + ...+++ ..+.|+|.-++++-.+..
T Consensus 186 ~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~E~ea~ 247 (374)
T PF03514_consen 186 LEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLVEQEAD 247 (374)
T ss_pred hhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEEeecCC
Confidence 34332 223444444455778888732 1 234554 455789996665544443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=84.17 E-value=4.4 Score=35.55 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=27.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhc------CCcEEEEeCCH
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVS 190 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~------~~~v~~vD~S~ 190 (280)
.+...++|+|||.|.++.++.+.. ...+..||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 455689999999999999988764 23789999643
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.28 E-value=1.7 Score=41.21 Aligned_cols=105 Identities=19% Similarity=0.167 Sum_probs=68.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-------CCCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-------TPET 228 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~~~ 228 (280)
.+..+|-+|-|.|.+...+..... ..+++|++.|.|++.|+.++.-.. ..+.+.+-.|--++ ..++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q------~~r~~V~i~dGl~~~~~~~k~~~~~ 368 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ------SDRNKVHIADGLDFLQRTAKSQQED 368 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh------hhhhhhhHhhchHHHHHHhhccccc
Confidence 456789999999988886655544 389999999999999998875420 01111221221111 1244
Q ss_pred CcEEEEEcc----chhhc--CChhhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 229 GRYDVIWVQ----WCIGH--LTDDDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~~----~~l~~--~~~~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
..||+++.. . .|- .++.++ +.++..+...|.|.|.|++-
T Consensus 369 ~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 369 ICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred cCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 689999742 2 222 233333 57999999999999999774
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=83.26 E-value=15 Score=32.72 Aligned_cols=96 Identities=11% Similarity=0.037 Sum_probs=58.9
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCCC--CCCCC
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF--TPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~~--~~~~~ 229 (280)
..++.+||=.|+ |.|..+..+++....+|.+++.++.-.+.+++. ... .-++.... +.... ....+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l-Ga~--------~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL-GFD--------VAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCC--------EEEeccccccHHHHHHHhCCC
Confidence 456778988884 577788878776554799999999888888653 211 00111110 11110 01124
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+|+|+-.-. . ..+....++|+++|.+++.
T Consensus 207 gvdvv~d~~G-------~--~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYFDNVG-------G--EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEEECCC-------H--HHHHHHHHHhCcCcEEEEe
Confidence 6999875322 1 2457788899999999875
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=82.70 E-value=1.8 Score=40.05 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=51.6
Q ss_pred CCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|+=+|+| .|..+...+.....+|+++|.++.-++.+...+.. .+.....+..++...-..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----------~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----------RIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----------eeEeccCCHHHHHHHHccCCEEE
Confidence 45679999987 44444544444333699999998877766554422 01111111111110013689998
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
..-.+.--. ...-+-+++.+.++||++|+-
T Consensus 236 ~a~~~~g~~--~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 236 GAVLIPGAK--APKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred EccccCCCC--CCcCcCHHHHhcCCCCCEEEE
Confidence 753211000 011123455566899987664
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.45 E-value=7.8 Score=33.42 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=56.6
Q ss_pred CCccEEEeecCc----c-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------
Q 023562 157 QHLVALDCGSGI----G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (280)
Q Consensus 157 ~~~~VLDlGcG~----G-~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------ 225 (280)
+++.+|-.|++. | .++..|++.+. +|..++.++...+..++..... ....++.+|+.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~ 79 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEEL--------DAPIFLPLDVREPGQLEAVF 79 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhh--------ccceEEecCcCCHHHHHHHH
Confidence 346789899764 3 23444555565 5888888765433333322211 11345677876642
Q ss_pred ----CCCCcEEEEEccchhhc----------CChhhHHHH-----------HHHHHHcCCCCcEEEEEe
Q 023562 226 ----PETGRYDVIWVQWCIGH----------LTDDDFVSF-----------FKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ----~~~~~fDlV~~~~~l~~----------~~~~d~~~~-----------l~~~~r~LkpGG~lii~e 269 (280)
...++.|+++.+-.+.. .+.+++... .+.+...|+.+|.|++.-
T Consensus 80 ~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 80 ARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred HHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 01156899987743321 233344333 355666677788776643
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=82.43 E-value=14 Score=33.49 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=33.6
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~ 199 (280)
..++.+||-.|||. |..+..+++....+|+++|.++.-++.+++.
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 45678999999865 5566666655444699999999999988764
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.34 E-value=21 Score=33.16 Aligned_cols=116 Identities=11% Similarity=0.030 Sum_probs=69.7
Q ss_pred chHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeE
Q 023562 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (280)
Q Consensus 137 ~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~ 216 (280)
...++|.+.+..... ..+||-++=..|.++..++...+. ...| |--.-...++|+..+++. ...+++
T Consensus 30 aade~ll~~~~~~~~------~~~~~i~nd~fGal~~~l~~~~~~--~~~d-s~~~~~~~~~n~~~n~~~----~~~~~~ 96 (378)
T PRK15001 30 AADEYLLQQLDDTEI------RGPVLILNDAFGALSCALAEHKPY--SIGD-SYISELATRENLRLNGID----ESSVKF 96 (378)
T ss_pred cHHHHHHHHHhhccc------CCCEEEEcCchhHHHHHHHhCCCC--eeeh-HHHHHHHHHHHHHHcCCC----ccccee
Confidence 344666666654321 137999999999999999855442 2233 222233345566554331 112333
Q ss_pred EEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 217 ~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.... .++ ++.+|+|+....=. ...++..+..+.+.|.||+.++..++..
T Consensus 97 ~~~~-~~~---~~~~d~vl~~~PK~---~~~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 97 LDST-ADY---PQQPGVVLIKVPKT---LALLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred eccc-ccc---cCCCCEEEEEeCCC---HHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 3221 122 25689987754321 1356789999999999999998877764
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=81.81 E-value=5.3 Score=35.84 Aligned_cols=93 Identities=10% Similarity=0.016 Sum_probs=56.7
Q ss_pred ccEEEeec--CccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-C-CCCCCcEEE
Q 023562 159 LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYDV 233 (280)
Q Consensus 159 ~~VLDlGc--G~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fDl 233 (280)
.+||=.|+ |.|..+..+++.... +|++++.+++-.+.+++.+... .-++....++.+ + ...+..+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~--------~vi~~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD--------AAINYKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc--------EEEECCCCCHHHHHHHHCCCCceE
Confidence 68888885 677788878776554 6999999988888877644321 001111111110 0 011246999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+..-. . ..+..+.+.|+++|.++..
T Consensus 228 vid~~g-------~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YFDNVG-------G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred EEECCC-------c--HHHHHHHHHhccCCEEEEE
Confidence 975322 1 2346778899999999874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.64 E-value=6.2 Score=35.78 Aligned_cols=100 Identities=19% Similarity=0.138 Sum_probs=64.9
Q ss_pred CCCCccEEEee--cCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--C-CCCC
Q 023562 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--T-PETG 229 (280)
Q Consensus 155 ~~~~~~VLDlG--cG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~-~~~~ 229 (280)
.+++.+||=.| .|.|.++..|++.....+.++--|++-.+.+++.-.+ .-+++...|+.+- . ....
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd---------~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD---------HVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC---------EEEcCCcccHHHHHHHHcCCC
Confidence 44578899888 4667888888887543577777777777777666543 2233333333221 1 1223
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.+|+|+..-. . ..+.+..+.|+++|.++..-..+
T Consensus 211 gvDvv~D~vG-------~--~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 211 GVDVVLDTVG-------G--DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CceEEEECCC-------H--HHHHHHHHHhccCCEEEEEecCC
Confidence 6999986543 2 56677888999999998876554
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=80.96 E-value=14 Score=33.77 Aligned_cols=99 Identities=16% Similarity=-0.056 Sum_probs=56.5
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CC-CCCCc
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~ 230 (280)
..++.+||=.|+|. |..+..+++. +...|+++|.++.-++.+++.-... -++....++.+ +. ...+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~---------~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA---------TVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce---------EeCCCchhHHHHHHHHhCCC
Confidence 44567888888753 3444555554 4436999999999999887642210 01111111100 00 11135
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|+|+-.-. . . ..+..+.+.|+++|.+++.-.
T Consensus 260 ~d~vid~~G--~----~--~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 260 VDYAFEMAG--S----V--PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCEEEECCC--C----h--HHHHHHHHHHhcCCEEEEEcc
Confidence 888875422 1 1 456677788999999987643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.57 E-value=4 Score=35.85 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=29.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV 189 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S 189 (280)
..+++...|+|+-+|.++-.|.+++- .|++||..
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng 242 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNG 242 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccc
Confidence 45778999999999999999998877 49999954
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 280 | ||||
| 2ex4_A | 241 | Crystal Structure Of Human Methyltransferase Ad-003 | 4e-40 | ||
| 1xtp_A | 254 | Structural Analysis Of Leishmania Major Lmaj004091a | 4e-35 |
| >pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In Complex With S-adenosyl-l-homocysteine Length = 241 | Back alignment and structure |
|
| >pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A Sam-dependent Methyltransferase Of The Duf858/pfam05891 Family Length = 254 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 6e-65
Identities = 79/215 (36%), Positives = 114/215 (53%), Gaps = 18/215 (8%)
Query: 61 PKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASV 120
K S + +SG D++GK +++ +EMW+ ++ G+ + + WY + + YW V A+V
Sbjct: 7 SKEASSRNLPISGRDTNGKTYRSTDEMWKAEL--TGDLYDPEKGWYGKALEYWRTVPATV 64
Query: 121 DGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180
GVLGG +V++VDI+GS F+ L A LDCG+GIGRITKNLL + +
Sbjct: 65 SGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRA--------LDCGAGIGRITKNLLTKLY 116
Query: 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCI 240
DLLEPV H L+ A+ LA F ++ T YD+I +QW
Sbjct: 117 ATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETATLPPNTYDLIVIQWTA 168
Query: 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
+LTD DFV FFK + L P G+ KEN +
Sbjct: 169 IYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD 203
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 1e-56
Identities = 77/183 (42%), Positives = 107/183 (58%), Gaps = 9/183 (4%)
Query: 93 GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPN 152
G E E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L +
Sbjct: 18 GSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 77
Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212
+ L DCG+GIGRITK LL+ F EVD+++ FL A+ L E +
Sbjct: 78 TGTSCAL---DCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------R 128
Query: 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272
N+FC LQDFTPE YDVIW+QW IGHLTD F +R K L+P G V+K+N+A
Sbjct: 129 VRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 188
Query: 273 RSG 275
+ G
Sbjct: 189 QEG 191
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 9e-10
Identities = 26/129 (20%), Positives = 38/129 (29%), Gaps = 20/129 (15%)
Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
A L L + A+ L+ G G G + +L F +VD + A
Sbjct: 31 SATLTKFLGELPAGAK------ILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASR 83
Query: 199 SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVG 258
+ YD +W C+ H+ D+ K
Sbjct: 84 ------------RLGRPVRTMLFHQL-DAIDAYDAVWAHACLLHVPRDELADVLKLIWRA 130
Query: 259 LKPGGFFVL 267
LKPGG F
Sbjct: 131 LKPGGLFYA 139
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 2e-09
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 2/107 (1%)
Query: 162 LDCGSGIGRITKNLL--IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
+D G G G + +LL + ++ L A + L + + K+ +
Sbjct: 726 VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG 785
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266
+ +F D+ I H+ +D F ++ P V
Sbjct: 786 SILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 4e-09
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
L+ +G+GR+T L + EV LE + L A R+ LA D+ +
Sbjct: 87 LELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAP---ADVRDRCTLVQGDM 142
Query: 222 QDFTPETGRYD-VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
F + R+ V+ I L + D + + L+PGG F+L
Sbjct: 143 SAFALD-KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLL 188
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-08
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 19/129 (14%)
Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
A L+ L + L+ SG G T++L V L+ + + A
Sbjct: 35 PAALERLRAGN-IRGD------VLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR 86
Query: 199 SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVG 258
F L D+TP+ ++D ++ + H+ DD F +F++ +
Sbjct: 87 HGLD----------NVEFRQQDLFDWTPD-RQWDAVFFAHWLAHVPDDRFEAFWESVRSA 135
Query: 259 LKPGGFFVL 267
+ PGG
Sbjct: 136 VAPGGVVEF 144
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 2e-08
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 2/106 (1%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G G + LL + F ++ ++ L+ A++ L + + K + F
Sbjct: 34 IDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID-RLPEMQRKRISLFQSS 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266
L YD V I HL ++ +F K +P V
Sbjct: 93 LVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-08
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD GSG GR T +L +++ LEP + ++ AR++ H + F
Sbjct: 45 ILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQT-----------HPSVTFHHGT 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+ D + R+ + + + H+ + ++ ++ GG ++
Sbjct: 93 ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 5e-08
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR + L + +VD + + + + EN + V
Sbjct: 36 TLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL------DNLHTRVVD 88
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
L + T + +YD I + L + KPGG+ ++
Sbjct: 89 LNNLTFD-RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 134
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 6e-08
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G G + K LL +F ++ ++ L+ A+E L +
Sbjct: 34 IDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQ-LIQGA 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266
L YD V I HL +F + +P V
Sbjct: 93 LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190
+K F++ + + R + + LD G G T L EV L+
Sbjct: 19 RIERVKAEIDFVEEIF--KEDAKREVRRV--LDLACGTGIPTL-ELAERGYEVVGLDLHE 73
Query: 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC--IGHLTDDDF 248
L AR A + + F + + + +D + + I + ++D
Sbjct: 74 EMLRVARRK-------AKERNLKIEFLQGDVLEIAFK-NEFDAV-TMFFSTIMYFDEEDL 124
Query: 249 VSFFKRAKVGLKPGGFFVL 267
F + LKPGG F+
Sbjct: 125 RKLFSKVAEALKPGGVFIT 143
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 16/139 (11%)
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190
+VD K F+ + + LD G G +T+ L F ++
Sbjct: 16 ADVDYKKWSDFIIEKCVENNLVFDD-----YLDLACGTGNLTE-NLCPKFKNTWAVDLSQ 69
Query: 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC-IGHLTD-DDF 248
L A + C + + ++D+I ++ D DD
Sbjct: 70 EMLSEAENKFRSQGLKP-------RLACQDISNL-NINRKFDLITCCLDSTNYIIDSDDL 121
Query: 249 VSFFKRAKVGLKPGGFFVL 267
+FK LK GG F+
Sbjct: 122 KKYFKAVSNHLKEGGVFIF 140
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-07
Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 20/137 (14%)
Query: 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHF 192
D + + L+ R P A + LD G G ++ + + LE
Sbjct: 21 KDYAAEASDIADLVRSRTPEASS-----LLDVACGTGTHLEHFTKEFG-DTAGLELSEDM 74
Query: 193 LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW-CIGHL-TDDDFVS 250
L AR+ L DM +DF ++ + + +G+L T ++ +
Sbjct: 75 LTHARKRLPDATLHQGDM-----------RDFRLG-RKFSAVVSMFSSVGYLKTTEELGA 122
Query: 251 FFKRAKVGLKPGGFFVL 267
L+PGG V+
Sbjct: 123 AVASFAEHLEPGGVVVV 139
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 7e-07
Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 12/124 (9%)
Query: 162 LDCGSGIGRITKNLL-------IRYFNEVDLLEPVSHFLDAARESLAPENHMAP---DMH 211
L G G G I +L +++EP + + +E +A +++ H
Sbjct: 57 LSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWH 116
Query: 212 KATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271
K T+ E ++D I + + ++ D + K L ++
Sbjct: 117 KETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVS 174
Query: 272 ARSG 275
SG
Sbjct: 175 GSSG 178
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 8e-07
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 9/109 (8%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR + Y + + V D S+A N + +
Sbjct: 124 VLDLGCGQGRNS-----LYLSLLGY--DV-TSWDHNENSIAFLNETKEKENLNISTALYD 175
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
+ + YD I L + S K K GG+ ++
Sbjct: 176 INAANIQ-ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 1e-06
Identities = 42/217 (19%), Positives = 68/217 (31%), Gaps = 22/217 (10%)
Query: 57 AAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGV 116
A K E E L G + + ++ E + W G
Sbjct: 138 AGDKNKGFERYFKEARALLGYGVVVRREGPYRVALLEKEKEAPPLPSLWRAFSARI-LGA 196
Query: 117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL 176
E + + G F +VD S L+ L P + ++ L G G + L
Sbjct: 197 EYTFHHLPGVFSA-GKVDP-ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLP---L 251
Query: 177 IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236
R EV +E + + ++ L N + + + E R+D+I
Sbjct: 252 ARMGAEVVGVEDDLASVLSLQKGLE-ANALKAQALHSDVDEAL------TEEARFDII-- 302
Query: 237 QWC-----IGHLTDDDFV-SFFKRAKVGLKPGGFFVL 267
+G D +F A L+PGG F L
Sbjct: 303 -VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 13/165 (7%)
Query: 114 EGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITK 173
++ D V G + I + F + + N + LD G+G G ++
Sbjct: 4 SEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSV-SIASVDTENPDI--LDLGAGTGLLSA 60
Query: 174 NLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232
L+ +Y L++ L+ A+ + + + E +YD
Sbjct: 61 FLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKV--------KYIEADYSKYDFE-EKYD 111
Query: 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGSE 277
++ I HL D+D +KR+ LK G F+ + + +
Sbjct: 112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAF 156
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-06
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 20/136 (14%)
Query: 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFL 193
D A L L+ P A + LD G G ++L + V+ LE + L
Sbjct: 32 DYHREAADLAALVRRHSPKAAS-----LLDVACGTGMHLRHLADSFG-TVEGLELSADML 85
Query: 194 DAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW-CIGHL-TDDDFVSF 251
AR DM +DF+ R+ + + IGHL + +
Sbjct: 86 AIARRRNPDAVLHHGDM-----------RDFSLG-RRFSAVTCMFSSIGHLAGQAELDAA 133
Query: 252 FKRAKVGLKPGGFFVL 267
+R + P G V+
Sbjct: 134 LERFAAHVLPDGVVVV 149
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-06
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
D G G G T LL ++ EV ++ L+ A+E A + ++ +F+ +
Sbjct: 38 ADIGCGTGTATL-LLADHY-EVTGVDLSEEMLEIAQEK-------AMETNRHVDFWVQDM 88
Query: 222 QDFTPETGRYDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVL 267
++ + + + +L T+ D F A L GG +
Sbjct: 89 RELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-06
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
L G GR L + EV +D + LA +A +
Sbjct: 33 ILCLAEGEGRNACFLASLGY-EV-------TAVDQSSVGLAKAKQLAQEKGVKITTVQSN 84
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
L DF ++ I +C HL + + GLKPGG F+L
Sbjct: 85 LADFDIVADAWEGIVSIFC--HLPSSLRQQLYPKVYQGLKPGGVFIL 129
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
D G G G T L ++ ++ F++ E A + + A +
Sbjct: 51 ADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNE-NAVKANCADR----VKGITGSM 105
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
+ + D+IW + I ++ + ++ + + LK GGF + E
Sbjct: 106 DNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKY---LKKGGFIAVSE 150
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 4e-06
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LDCG+G ++ + + +E L A + EN+ ++ K + +P
Sbjct: 28 LDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN-FSRENNFKLNISKG-DIRKLPF 85
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+D ++ I H+ +D K LKPGG +
Sbjct: 86 KD-----ESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACI 126
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 13/107 (12%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G GRI L + +V + +D A++ + L
Sbjct: 51 LDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQD-----------FPEARWVVGDL 98
Query: 222 QDFTPETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+D+I +G L +D L G V+
Sbjct: 99 SVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVI 145
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-05
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
D G G G T L +V L+ +S F+D A ++ + + +
Sbjct: 51 ADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNR-NARQSGLQNRVT----GIVGSM 105
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
D D+IW + I ++ + ++ +++ LK GG+ + E
Sbjct: 106 DDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKY---LKKGGYLAVSE 150
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 7e-05
Identities = 31/151 (20%), Positives = 50/151 (33%), Gaps = 13/151 (8%)
Query: 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE 182
V + ++N + + L+ LL LD G+G + LL Y E
Sbjct: 9 VFPTYTDINSQEYRSRIETLEPLLMKYMKKRGK-----VLDLACGVGGFSF-LLEDYGFE 62
Query: 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH 242
V ++ + ARE A F + + E +D + I H
Sbjct: 63 VVGVDISEDMIRKAREY-------AKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115
Query: 243 LTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273
+ FK + LKP G F++ R
Sbjct: 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLR 146
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 8e-05
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
L+ G GIG T L + E+ ++ L+ ARE+ +A N F +P
Sbjct: 42 LEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQA-NIFSLP 100
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARS 274
+D +D I+V + + HL ++ + K+ LKPGG + E S
Sbjct: 101 FED-----SSFDHIFVCFVLEHLQSPEEALKSLKKV---LKPGGTITVIEGDHGS 147
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 1e-04
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 15/130 (11%)
Query: 146 LSDRFPNARNNQHLVALDCGSGIGRITKNL--LIRYFNEVDLLEPVSHFLDAARESLAPE 203
+ + + +D G G G T + ++ F ++ + + + A
Sbjct: 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEG- 83
Query: 204 NHMAPDMHKATNFFCVPLQDFTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
+PD +K +F DF + + D+I C H D + F + A
Sbjct: 84 ---SPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFE--KFQRSAYA 137
Query: 258 GLKPGGFFVL 267
L+ G +
Sbjct: 138 NLRKDGTIAI 147
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD GSG+G + +Y ++ S+ ++ A E N+ +A +
Sbjct: 60 LDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANE-RVSGNNKII--FEANDILTKEF 116
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+ +D+I+ + I L+ ++ F++ LKP G ++
Sbjct: 117 PE-----NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLI 157
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 1e-04
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
AL G G G + V L+ L A E + A F
Sbjct: 70 ALVPGCGGGHDVVAMASPERF-VVGLDISESALAKANE-TYGSSPKAEYFS----FVKED 123
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+ + P +D+I+ + + ++ K LKP G +
Sbjct: 124 VFTWRPT-ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELIT 169
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 28/108 (25%), Positives = 37/108 (34%), Gaps = 16/108 (14%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
L+ G G G +T LL+ V +EP A+E L E F +
Sbjct: 50 LEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLPKE-------------FSITE 95
Query: 222 QDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
DF D I + HLTDD+ + L GG V
Sbjct: 96 GDFLSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVF 143
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
L+ G G T+ L + + +++ + + A + +H+ ++
Sbjct: 55 GLEIGCAAGAFTE-KLAPHCKRLTVIDVMPRAIGRACQRTKRWSHI--------SWAATD 105
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVL 267
+ F+ +D+I V + +L D + L PGG V
Sbjct: 106 ILQFSTA-ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 2e-04
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 6/108 (5%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G E ++ ++ AR +A + + +
Sbjct: 69 LDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM 128
Query: 222 QDFTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVL 267
+DVI Q+ + T + + L+PGG+F++
Sbjct: 129 DLGKE----FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 5/109 (4%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G TK L ++F V L+ L+ A + +++ +
Sbjct: 60 LIDFACGNGTQTK-FLSQFFPRVIGLDVSKSALEIAAKE-NTAANISYRLLDGLVP--EQ 115
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
E G ++ H+ + + ++ L G L E
Sbjct: 116 AAQIHSEIGDANIYMRT-GFHHIPVEKRELLGQSLRILLGKQGAMYLIE 163
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 8/113 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVP 220
LD G G + L+ F V ++ L A + +
Sbjct: 62 LDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120
Query: 221 LQDFTPETGRYDVIWVQW-CIGHLTD-----DDFVSFFKRAKVGLKPGGFFVL 267
L P +D + HL D + K ++PGG V+
Sbjct: 121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 4e-04
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 26/172 (15%)
Query: 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALD 163
+ EG + ++ F +DI G+ F+Q L + +D
Sbjct: 179 DAPQTVSWKLEGTDWTIHNHANVFSR-TGLDI-GARFFMQHLPENLEGEI--------VD 228
Query: 164 CGSGIGRITKNLLIRYFN-EVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFCVPL 221
G G G I LL + +V ++ S + ++R ++ +M + + L
Sbjct: 229 LGCGNGVIGLTLLDKNPQAKVVFVD-ESPMAVASSRLNVE--TNMPEALDRCEFMINNAL 285
Query: 222 QDFTPETGRYDVIWVQWC-----IGHLTDDDFV-SFFKRAKVGLKPGGFFVL 267
P R++ + C H D+ F A+ LK G +
Sbjct: 286 SGVEPF--RFNAVL---CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 7e-04
Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 31/163 (19%)
Query: 113 WEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRIT 172
+ +V + G F + +D+ GS+ L L LD G G G ++
Sbjct: 162 YSVDGLTVKTLPGVFSR-DGLDV-GSQLLLSTLTPHTKGKV--------LDVGCGAGVLS 211
Query: 173 KNLLIRYFN-EVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230
+ L + VS ++A+R +LA F + F+ GR
Sbjct: 212 VAFARHSPKIRLTLCD-VSAPAVEASRATLA-------ANGVEGEVFASNV--FSEVKGR 261
Query: 231 YDVIWVQWC-----IGHLTDDDFV-SFFKRAKVGLKPGGFFVL 267
+D+I G T D + + A L GG +
Sbjct: 262 FDMII---SNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 280 | |||
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.94 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.89 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.85 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.81 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.81 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.81 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.8 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.8 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.8 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.79 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.79 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.79 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.79 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.79 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.78 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.78 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.78 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.78 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.78 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.77 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.77 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.77 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.77 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.77 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.77 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.77 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.76 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.76 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.76 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.76 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.75 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.75 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.75 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.75 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.74 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.74 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.74 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.74 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.74 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.74 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.74 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.74 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.74 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.74 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.73 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.73 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.73 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.72 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.72 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.72 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.71 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.71 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.71 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.71 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.71 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.71 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.7 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.7 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.7 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.7 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.7 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.7 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.7 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.69 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.69 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.69 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.69 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.68 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.68 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.67 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.67 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.66 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.66 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.65 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.64 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.64 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.64 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.64 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.64 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.64 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.64 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.64 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.64 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.63 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.63 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.63 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.63 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.63 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.63 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.63 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.62 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.62 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.62 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.62 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.61 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.61 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.61 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.61 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.61 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.61 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.61 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.61 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.61 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.6 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.6 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.6 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.6 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.6 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.6 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.59 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.59 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.59 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.59 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.59 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.59 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.59 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.58 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.58 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.58 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.58 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.57 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.57 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.57 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.57 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.56 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.56 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.56 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.56 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.56 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.55 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.55 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.55 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.54 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.54 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.54 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.54 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.54 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.54 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.54 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.54 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.54 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.53 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.53 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.53 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.53 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.52 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.52 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.52 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.52 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.51 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.51 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.51 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.5 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.5 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.5 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.5 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.5 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.49 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.49 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.49 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.49 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.48 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.48 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.48 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.48 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.48 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.48 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.48 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.48 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.48 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.47 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.47 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.46 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.46 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.46 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.46 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.45 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.45 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.45 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.45 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.45 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.44 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.44 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.44 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.44 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.43 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.43 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.43 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.43 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.43 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.42 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.42 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.42 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.42 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.42 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.42 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.42 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.41 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.41 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.4 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.4 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.39 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.39 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.39 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.39 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.39 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.39 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.39 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.38 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.38 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.38 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.38 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.37 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.37 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.37 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.36 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.36 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.36 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.36 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.35 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.35 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.34 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.34 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.34 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.33 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.33 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.33 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.32 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.31 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.3 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.3 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.28 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.28 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.28 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.27 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.27 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.25 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.25 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.25 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.22 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.22 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.17 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.14 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.12 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.12 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.11 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.1 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.1 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.09 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.08 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.08 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.08 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.07 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.04 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.97 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.97 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.94 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.93 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.93 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.92 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.92 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.87 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.85 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.84 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.8 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.78 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.76 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.75 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.72 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.71 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.69 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.66 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.65 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.64 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.63 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.61 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.59 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.5 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.49 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.47 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.46 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.43 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.42 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.41 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.39 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.38 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.29 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.26 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.25 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.2 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.11 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.03 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.0 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.6 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.56 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.53 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.48 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.38 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.19 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.03 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.96 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.79 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.76 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.74 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.73 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.63 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.42 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.33 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.09 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.02 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.57 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 95.46 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.41 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.39 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.12 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.89 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.86 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.77 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.67 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.56 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.45 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.45 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 94.39 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.31 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.31 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.26 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.81 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.74 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.65 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 93.5 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.39 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.38 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.32 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.27 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 93.25 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.19 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 93.16 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.12 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.09 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 93.02 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.96 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.95 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 92.85 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 92.75 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.75 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.67 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.54 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 92.29 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.21 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.13 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.12 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.11 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.09 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 92.08 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 92.01 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 91.97 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 91.87 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 91.87 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.87 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 91.86 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 91.8 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 91.61 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 91.57 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 91.38 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 91.19 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.11 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 91.03 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 90.9 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 90.78 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 90.67 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 90.48 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 90.47 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 90.4 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 90.22 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 90.18 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 89.84 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 89.76 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 89.67 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 89.67 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 89.32 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 88.71 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 88.7 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 88.61 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 88.54 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 88.35 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 88.35 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 87.85 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 87.37 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 87.35 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 87.12 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 86.85 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 86.81 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 86.66 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 86.6 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 86.54 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 86.04 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 85.48 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 85.21 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 85.17 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 84.94 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 84.78 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 84.23 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 84.2 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 83.59 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 83.58 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 83.09 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 82.49 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 80.96 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 80.03 |
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=197.33 Aligned_cols=189 Identities=40% Similarity=0.763 Sum_probs=152.5
Q ss_pred CcccccccccCCCcccccHHHHHHHhhcCCcccchhhhHHHHHHHhhhhcccccccccccCccccccccccchHHHHHHH
Q 023562 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML 145 (280)
Q Consensus 66 ~~~~~~~~~~~~g~~~~~~~e~w~~~l~~~~~~~~~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (280)
+..+...|.++.|+.|.+.+++|++.+..... .....||....+||+.....+++.+.++........ .++..+
T Consensus 12 ~~~~~~~g~d~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 85 (254)
T 1xtp_A 12 SRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDI----EGSRNF 85 (254)
T ss_dssp -CCCCCCEEETTSCEESCHHHHHHHHSCSCTT--CTTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHH----HHHHHH
T ss_pred cccccccccCCCCcccccHHHHHHHHHhcccc--ccchhhhhhhhhHHhcCCccccceecCcCccCHHHH----HHHHHH
Confidence 56677899999999999999999998776432 222358888899999988888777776654332222 233333
Q ss_pred HhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC
Q 023562 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (280)
Q Consensus 146 l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 225 (280)
+.. +. ..++.+|||+|||+|.++..+++.+..+|+++|+|+.|++.|++++.. ..++++.++|+.+++
T Consensus 86 l~~-l~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~ 153 (254)
T 1xtp_A 86 IAS-LP---GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETAT 153 (254)
T ss_dssp HHT-ST---TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGGGCC
T ss_pred HHh-hc---ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEccHHHCC
Confidence 332 22 346789999999999999999988766799999999999999999865 256899999999888
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+++++||+|++..+++|++++++..+++++.++|||||++++.+++.
T Consensus 154 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 200 (254)
T 1xtp_A 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS 200 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 77789999999999999987788999999999999999999999754
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-23 Score=177.57 Aligned_cols=164 Identities=45% Similarity=0.907 Sum_probs=130.3
Q ss_pred hhhHHHHHHHhhhhcccccccccccCccccccccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcC
Q 023562 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180 (280)
Q Consensus 101 ~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~ 180 (280)
....||+...+||+.....++.+++++..+...+......++..++..... ..++.+|||+|||+|.++..+++.+.
T Consensus 26 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~ 102 (241)
T 2ex4_A 26 DEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN---KTGTSCALDCGAGIGRITKRLLLPLF 102 (241)
T ss_dssp CHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTC
T ss_pred ccchhHHHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhccc---CCCCCEEEEECCCCCHHHHHHHHhcC
Confidence 345788888999999888888877776655444444444555555433211 23568999999999999999887776
Q ss_pred CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCC
Q 023562 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK 260 (280)
Q Consensus 181 ~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~Lk 260 (280)
.+|+++|+|+.|++.|++++...+ ..++++.++|+.++++++++||+|++..+++|++++++..+++++.++|+
T Consensus 103 ~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk 176 (241)
T 2ex4_A 103 REVDMVDITEDFLVQAKTYLGEEG------KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLR 176 (241)
T ss_dssp SEEEEEESCHHHHHHHHHHTGGGG------GGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE
T ss_pred CEEEEEeCCHHHHHHHHHHhhhcC------CceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcC
Confidence 589999999999999999986531 24688999999888877679999999999999997778899999999999
Q ss_pred CCcEEEEEeccCC
Q 023562 261 PGGFFVLKENIAR 273 (280)
Q Consensus 261 pGG~lii~e~~~~ 273 (280)
|||++++.+++..
T Consensus 177 pgG~l~i~~~~~~ 189 (241)
T 2ex4_A 177 PNGIIVIKDNMAQ 189 (241)
T ss_dssp EEEEEEEEEEEBS
T ss_pred CCeEEEEEEccCC
Confidence 9999999987643
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.1e-21 Score=165.60 Aligned_cols=112 Identities=14% Similarity=0.269 Sum_probs=98.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC---cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~---~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 231 (280)
..++.+|||+|||+|..+..++++... +|+|+|+|+.||+.|++++...+. ..+++++++|+.+++.+ +|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~-----~~~v~~~~~D~~~~~~~--~~ 140 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIAIE--NA 140 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCTTTCCCC--SE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc-----CceEEEeeccccccccc--cc
Confidence 346789999999999999999876432 799999999999999999876543 46799999999998754 69
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
|+|+++++++|+++++...++++++++|||||.|+++|.+..
T Consensus 141 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 141 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred ccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 999999999999988888999999999999999999988754
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=154.09 Aligned_cols=110 Identities=22% Similarity=0.389 Sum_probs=97.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..+++... .+|+++|+|+.|++.|++++... .++++.++|+.+++++ ++||+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~~~~~-~~fD~ 112 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN--------LKVKYIEADYSKYDFE-EKYDM 112 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC--------TTEEEEESCTTTCCCC-SCEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC--------CCEEEEeCchhccCCC-CCceE
Confidence 34568999999999999999998853 37999999999999999998763 3799999999998877 89999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
|++..+++|+++++...+++++.++|||||++++.+.+..
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 9999999999977777899999999999999999987643
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-20 Score=154.23 Aligned_cols=111 Identities=11% Similarity=0.004 Sum_probs=90.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCC---C---CCCCcceeEEEccCCCCCCCC-
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM---A---PDMHKATNFFCVPLQDFTPET- 228 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~---~---~~~~~~i~~~~~d~~~~~~~~- 228 (280)
.++.+|||+|||+|..+..|+++++ +|+|+|+|+.||+.|+++....... . .....+++++++|+.++++.+
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 4667999999999999999998876 6999999999999999886431000 0 000246899999999987654
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
++||+|++..+++|+++++...++++++++|||||++++
T Consensus 100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l 138 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL 138 (203)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 689999999999999987888999999999999998443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=150.58 Aligned_cols=104 Identities=26% Similarity=0.285 Sum_probs=92.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +++++|+|+.|++.++++.. .++++.++|+.+++.+ ++||+|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~----------~~~~~~~~d~~~~~~~-~~fD~v~~ 112 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP----------KEFSITEGDFLSFEVP-TSIDTIVS 112 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC----------TTCCEESCCSSSCCCC-SCCSEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC----------CceEEEeCChhhcCCC-CCeEEEEE
Confidence 567999999999999999998855 69999999999999999875 2588999999998877 89999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
..+++|+++++...+++++.++|||||.+++.+...
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 999999997766669999999999999999997653
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-19 Score=148.68 Aligned_cols=103 Identities=20% Similarity=0.336 Sum_probs=93.1
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
+.+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++. .++++.++|+.+++.++++||+|++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH-----------PSVTFHHGTITDLSDSPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC-----------TTSEEECCCGGGGGGSCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-----------CCCeEEeCcccccccCCCCeEEEEeh
Confidence 57999999999999999998866 6999999999999999984 35889999999887767899999999
Q ss_pred chhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.+++|+++++...+++++.++|+|||++++.+...
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 144 (203)
T 3h2b_A 110 YSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSG 144 (203)
T ss_dssp SSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred hhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 99999988888999999999999999999987553
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-19 Score=155.38 Aligned_cols=112 Identities=20% Similarity=0.265 Sum_probs=98.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++....+|+++|+|+.|++.|+++....++ ..++++.++|+.++++++++||+|
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v 154 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFLEIPCEDNSYDFI 154 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEEcCcccCCCCCCCEeEE
Confidence 456789999999999999999887444799999999999999998765443 457999999999988777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
++..+++|++ +...+++++.++|||||++++.+....
T Consensus 155 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 191 (297)
T 2o57_A 155 WSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKE 191 (297)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred EecchhhhcC--CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 9999999998 577999999999999999999987643
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-19 Score=154.04 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=96.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++....+|+++|+|+.+++.|++++...++ ..++++..+|+.+++ ++||+|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~---~~fD~v 133 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----LRSKRVLLAGWEQFD---EPVDRI 133 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----CSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhCC---CCeeEE
Confidence 456789999999999999999865445899999999999999999876543 357899999998765 789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++..+++|+++++...+++++.++|||||.+++.+...
T Consensus 134 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 134 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred EEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 99999999977788999999999999999999987654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-19 Score=152.12 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=99.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++....+|+++|+|+.|++.|+++... ..++++.++|+.+++.++++||+|
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~v 124 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG--------NNKIIFEANDILTKEFPENNFDLI 124 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS--------CTTEEEEECCTTTCCCCTTCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc--------CCCeEEEECccccCCCCCCcEEEE
Confidence 556789999999999999999987544799999999999999998765 257999999999988777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
++..+++|+++++...+++++.++|||||.+++.+....
T Consensus 125 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (266)
T 3ujc_A 125 YSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT 163 (266)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred eHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 999999999777999999999999999999999987543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-19 Score=153.96 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=92.1
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcC-------CCCCC----CCCcceeEEEccCCCC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE-------NHMAP----DMHKATNFFCVPLQDF 224 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~-------~~~~~----~~~~~i~~~~~d~~~~ 224 (280)
.++.+|||+|||+|..+..|+++++ +|+|+|+|+.||+.|+++.... ..... ....+++|.++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 3567999999999999999998887 5999999999999998776310 00000 0135799999999998
Q ss_pred CCCC-CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 225 TPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 225 ~~~~-~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++.+ ++||+|++..+++|+++++...+++++.++|||||++++.
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 7653 7999999999999999888889999999999999999754
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=151.38 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=98.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++....+|+++|+|+.+++.+++++...++ ..++++..+|+.+++.++++||+|
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v 133 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL-----ANRVTFSYADAMDLPFEDASFDAV 133 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECccccCCCCCCCccEE
Confidence 456789999999999999999887555899999999999999998876543 356999999999988777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
++..+++|++ +...+++++.++|||||.+++.+....
T Consensus 134 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~ 170 (273)
T 3bus_A 134 WALESLHHMP--DRGRALREMARVLRPGGTVAIADFVLL 170 (273)
T ss_dssp EEESCTTTSS--CHHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred EEechhhhCC--CHHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 9999999998 567999999999999999999986643
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9.3e-19 Score=147.57 Aligned_cols=115 Identities=21% Similarity=0.146 Sum_probs=96.5
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..+++.+. .+|+++|+|+.|++.|++++...++... ...++++.++|+...+...++||+|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN-QWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHH-HHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcc-cCcceEEEeCCcccccccCCCcCEE
Confidence 3567999999999999999988765 3899999999999999999876543100 0127999999997776556799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++..+++|++++++..+++++.++|||||+++++.+.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 143 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNI 143 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCc
Confidence 9999999999888899999999999999988887664
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-19 Score=156.16 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=86.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.+.+|||||||+|.++..|++++. +|+|+|+|+.|++.|++ ..++++.+++++++++++++||+|++
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~------------~~~v~~~~~~~e~~~~~~~sfD~v~~ 105 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALR------------HPRVTYAVAPAEDTGLPPASVDVAIA 105 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCC------------CTTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhh------------cCCceeehhhhhhhcccCCcccEEEE
Confidence 456899999999999999887765 69999999999987653 24699999999999988899999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..++||++ ...+++++.|+|||||.|++..+.
T Consensus 106 ~~~~h~~~---~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 106 AQAMHWFD---LDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp CSCCTTCC---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eeehhHhh---HHHHHHHHHHHcCCCCEEEEEECC
Confidence 99998875 347999999999999999987653
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=153.16 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=96.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++....+|+++|+|+.|++.|++++...++ ..++++..+|+.++ +++||+|
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~---~~~fD~v 141 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----PRRKEVRIQGWEEF---DEPVDRI 141 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC-----SSCEEEEECCGGGC---CCCCSEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECCHHHc---CCCccEE
Confidence 456789999999999999999988446799999999999999999877544 45799999999887 4899999
Q ss_pred EccchhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++..+++|+++ +++..+++++.++|||||++++.+...
T Consensus 142 ~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 186 (302)
T 3hem_A 142 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 186 (302)
T ss_dssp EEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred EEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 99999999943 567899999999999999999987754
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=149.85 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=93.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+..+|+++|+|+.|++.|+++... .++++.++|+.+++.++++||+|
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS---------PVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCC---------TTEEEEECCGGGCCCCTTCEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhcc---------CCeEEEEcchhhCCCCCCCeEEE
Confidence 346789999999999999999988776899999999999999998762 46899999999988777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++..+++|++ +...+++++.++|||||.++++.
T Consensus 113 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 113 LSSLALHYIA--SFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEchhhhhhh--hHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999999997 77899999999999999999973
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.7e-19 Score=151.47 Aligned_cols=109 Identities=19% Similarity=0.253 Sum_probs=95.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|++++...++ .++++.++|+.++++++++||+|
T Consensus 35 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~l~~~~~~fD~V 107 (260)
T 1vl5_A 35 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDAEQMPFTDERFHIV 107 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC-CCCSCTTCEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCC------CceEEEEecHHhCCCCCCCEEEE
Confidence 34667999999999999999887765 799999999999999998765432 36899999999988777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+++.+++|++ +...+++++.++|||||++++.++..
T Consensus 108 ~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~~~~~~~ 143 (260)
T 1vl5_A 108 TCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSA 143 (260)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred EEhhhhHhcC--CHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence 9999999998 66799999999999999999987654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=145.36 Aligned_cols=105 Identities=21% Similarity=0.317 Sum_probs=92.5
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.+++.. ..++++.++|+.++ ..+++||+|+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~----------~~~~~~~~~d~~~~-~~~~~~D~v~ 112 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGRHG----------LDNVEFRQQDLFDW-TPDRQWDAVF 112 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGGGC----------CTTEEEEECCTTSC-CCSSCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHhcC----------CCCeEEEecccccC-CCCCceeEEE
Confidence 3556999999999999999998855 6999999999999998821 25699999999988 5568999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++.+++|++++++..+++++.++|+|||.+++.++..
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 9999999998778899999999999999999997754
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=146.90 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=95.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..+++.+. .+|+++|+|+.|++.|++++...++... ...++++.++|+...+..+++||+|+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM-QRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHH-HHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccc-cCcceEEEeCcccccccccCCCCEEE
Confidence 567999999999999999987765 3899999999999999999876432000 00179999999977776668999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+..+++|++++++..+++++.++|||||+++++.+.
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 143 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK 143 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch
Confidence 999999999888889999999999999988887664
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=153.09 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=96.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++....+|+++|+|+.|++.|+++....++ ..++++..+|+.+++ ++||+|
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~---~~fD~v 159 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----NRSRQVLLQGWEDFA---EPVDRI 159 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChHHCC---CCcCEE
Confidence 456789999999999999999987333799999999999999999876543 356899999998774 789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
++..+++|++++++..+++++.++|||||.+++.+....
T Consensus 160 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 160 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 999999999877899999999999999999999877643
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=149.84 Aligned_cols=110 Identities=17% Similarity=0.108 Sum_probs=96.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++....+|+++|+|+.|++.|++++...++ ..++++.++|+.++++ +++||+|
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~-~~~fD~V 107 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFIHNDAAGYVA-NEKCDVA 107 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCCTTCCC-SSCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECChHhCCc-CCCCCEE
Confidence 456789999999999999999887554799999999999999999876543 3579999999999877 6899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++..+++|++ +...+++++.++|||||.+++.+...
T Consensus 108 ~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~ 143 (256)
T 1nkv_A 108 ACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYW 143 (256)
T ss_dssp EEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred EECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 9999999998 56799999999999999999987653
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-19 Score=150.00 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=92.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.. ..+++++++|+.+++.++++||+|++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~~~~~~fD~v~~ 122 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE---------GPDLSFIKGDLSSLPFENEQFEAIMA 122 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC---------BTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc---------cCCceEEEcchhcCCCCCCCccEEEE
Confidence 567999999999999999998865 69999999999999998853 35789999999998877789999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..+++|++ +...+++++.++|+|||++++.+..
T Consensus 123 ~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 155 (242)
T 3l8d_A 123 INSLEWTE--EPLRALNEIKRVLKSDGYACIAILG 155 (242)
T ss_dssp ESCTTSSS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cChHhhcc--CHHHHHHHHHHHhCCCeEEEEEEcC
Confidence 99999997 6679999999999999999998743
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=145.35 Aligned_cols=106 Identities=16% Similarity=0.226 Sum_probs=93.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++.... .+++++++|+.+++ ++++||+|
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~~~-~~~~fD~v 118 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRW--------SHISWAATDILQFS-TAELFDLI 118 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTC--------SSEEEEECCTTTCC-CSCCEEEE
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccC--------CCeEEEEcchhhCC-CCCCccEE
Confidence 44668999999999999999987765 6999999999999999998762 47999999999987 45899999
Q ss_pred EccchhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+++.+++|+++ +++..+++++.++|||||++++...
T Consensus 119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 99999999995 5567899999999999999999753
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=147.82 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=96.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.|++++...++ ..++++.++|+.+++.++++||+|
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v 118 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-----ADRVKGITGSMDNLPFQNEELDLI 118 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECChhhCCCCCCCEEEE
Confidence 446679999999999999999988766899999999999999999877554 456999999999988777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++..+++|++ ...+++++.++|||||++++.+..
T Consensus 119 ~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 119 WSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp EEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred EecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEee
Confidence 9999999983 568999999999999999999854
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-18 Score=141.60 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=98.5
Q ss_pred HHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC
Q 023562 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221 (280)
Q Consensus 142 l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~ 221 (280)
+...+...+ .++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++... ..++++.++|+
T Consensus 32 ~~~~l~~~~-----~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--------~~~i~~~~~d~ 98 (215)
T 2pxx_A 32 FRALLEPEL-----RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--------VPQLRWETMDV 98 (215)
T ss_dssp HHHHHGGGC-----CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--------CTTCEEEECCT
T ss_pred HHHHHHHhc-----CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--------CCCcEEEEcch
Confidence 455554432 35679999999999999999988775799999999999999998764 24689999999
Q ss_pred CCCCCCCCcEEEEEccchhhcCC-------------hhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 222 QDFTPETGRYDVIWVQWCIGHLT-------------DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 222 ~~~~~~~~~fDlV~~~~~l~~~~-------------~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.+++.++++||+|+++.+++++. ..+...+++++.++|||||.+++.+..
T Consensus 99 ~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 99 RKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp TSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 98877678999999999887765 346789999999999999999998764
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=145.97 Aligned_cols=107 Identities=19% Similarity=0.182 Sum_probs=94.3
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~ 238 (280)
.+|||+|||+|.++..+++....+|+++|+|+.+++.|++++...++ ..++++.++|+.+++.++++||+|+++.
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 119 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL-----NDRIQIVQGDVHNIPIEDNYADLIVSRG 119 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECBTTBCSSCTTCEEEEEEES
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc-----cCceEEEEcCHHHCCCCcccccEEEECc
Confidence 39999999999999999887333799999999999999999876543 3579999999999887778999999999
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+++|++ +...+++++.++|+|||.+++.+...
T Consensus 120 ~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 120 SVFFWE--DVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp CGGGCS--CHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred hHhhcc--CHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 999997 77799999999999999999987553
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-18 Score=143.64 Aligned_cols=102 Identities=23% Similarity=0.406 Sum_probs=90.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++. ++.+..+|+.+++ .+++||+|+
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------------~~~~~~~d~~~~~-~~~~fD~v~ 107 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL------------GRPVRTMLFHQLD-AIDAYDAVW 107 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------------TSCCEECCGGGCC-CCSCEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc------------CCceEEeeeccCC-CCCcEEEEE
Confidence 3567999999999999999998865 6999999999999999886 2566788888887 558999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++.+++|++++++..+++++.++|||||++++....
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 108 AHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 999999999888999999999999999999998554
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=150.32 Aligned_cols=120 Identities=26% Similarity=0.308 Sum_probs=101.0
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~ 218 (280)
..+..++..... ..++.+|||+|||+|.++..+++.++ .+|+++|+|+.+++.|++++...+. .++++..
T Consensus 23 ~~l~~~l~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~ 93 (276)
T 3mgg_A 23 ETLEKLLHHDTV---YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI------KNVKFLQ 93 (276)
T ss_dssp CHHHHHHHTTCC---CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEE
T ss_pred HHHHHHHhhccc---CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEE
Confidence 345555544332 45678999999999999999998853 3899999999999999999876433 3699999
Q ss_pred ccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 219 VPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 219 ~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.|+.+++.++++||+|+++.+++|++ +...+++++.++|||||++++.+.
T Consensus 94 ~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 94 ANIFSLPFEDSSFDHIFVCFVLEHLQ--SPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp CCGGGCCSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccCCCCCCCeeEEEEechhhhcC--CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 99999887778999999999999998 556999999999999999999874
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=146.52 Aligned_cols=101 Identities=23% Similarity=0.274 Sum_probs=89.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++... ++++.++|+.++. ++++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~----------~v~~~~~d~~~~~-~~~~fD~v~~ 109 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----------GITYIHSRFEDAQ-LPRRYDNIVL 109 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----------CEEEEESCGGGCC-CSSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC----------CeEEEEccHHHcC-cCCcccEEEE
Confidence 457899999999999999987766 699999999999999998642 5899999998874 4589999999
Q ss_pred cchhhcCChhhHHHHHHHHH-HcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAK-VGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~-r~LkpGG~lii~e~~ 271 (280)
..+++|++ +...+++++. ++|||||++++.+..
T Consensus 110 ~~~l~~~~--~~~~~l~~~~~~~LkpgG~l~i~~~~ 143 (250)
T 2p7i_A 110 THVLEHID--DPVALLKRINDDWLAEGGRLFLVCPN 143 (250)
T ss_dssp ESCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred hhHHHhhc--CHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 99999998 5679999999 999999999998754
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-18 Score=140.71 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=95.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.+++++...++ .++++..+|+.+++. +++||+|+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~-~~~~D~v~ 102 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL------DNLHTRVVDLNNLTF-DRQYDFIL 102 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECCGGGCCC-CCCEEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCC------CCcEEEEcchhhCCC-CCCceEEE
Confidence 3567999999999999999998855 699999999999999998765422 368999999988876 68999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
++.+++|+++++...+++++.++|+|||.+++.+....
T Consensus 103 ~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (199)
T 2xvm_A 103 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT 140 (199)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCC
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeecc
Confidence 99999999988889999999999999999988876543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-18 Score=146.94 Aligned_cols=109 Identities=20% Similarity=0.247 Sum_probs=95.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++....+|+++|+|+.|++.|++++...++ ..++++.++|+.+++.++++||+|
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~i 118 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL-----QNRVTGIVGSMDDLPFRNEELDLI 118 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCCCCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC-----CcCcEEEEcChhhCCCCCCCEEEE
Confidence 456789999999999999999887544899999999999999999876544 456999999999988777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++..+++|++ ...+++++.++|||||++++.+..
T Consensus 119 ~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 119 WSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp EESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred EEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEee
Confidence 9999999983 568999999999999999999765
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-18 Score=144.61 Aligned_cols=109 Identities=17% Similarity=0.065 Sum_probs=94.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++....+. ..++++.++|+.++++. ++||+|++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~fD~v~~ 138 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPK-----AEYFSFVKEDVFTWRPT-ELFDLIFD 138 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGG-----GGGEEEECCCTTTCCCS-SCEEEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCC-----CcceEEEECchhcCCCC-CCeeEEEE
Confidence 346999999999999998876554 699999999999999999876322 35799999999998754 69999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+.+++|+++++...+++++.++|||||.+++.+...
T Consensus 139 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 139 YVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp ESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred ChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 999999998889999999999999999999987643
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-18 Score=151.39 Aligned_cols=106 Identities=23% Similarity=0.290 Sum_probs=93.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|++++...++ ..+++++++|+.+++ ..+++||+|+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD~v~ 141 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGV-----SDNMQFIHCAAQDVASHLETPVDLIL 141 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CC-----GGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEEcCHHHhhhhcCCCceEEE
Confidence 367999999999999999998855 699999999999999999876543 467999999999886 5568999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+..+++|++ +...+++++.++|||||++++.+.
T Consensus 142 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 142 FHAVLEWVA--DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp EESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECchhhccc--CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 999999998 667999999999999999999864
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=146.34 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=96.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.+++++...++ .++++.++|++++++++++||+|
T Consensus 19 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~v 91 (239)
T 1xxl_A 19 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTAESLPFPDDSFDII 91 (239)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBTTBCCSCTTCEEEE
T ss_pred cCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCC------CCeEEEecccccCCCCCCcEEEE
Confidence 45678999999999999999887765 799999999999999998765432 36899999999988777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++..+++|++ +...+++++.++|||||++++.++..
T Consensus 92 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 92 TCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred EECCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 9999999998 67799999999999999999987764
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=140.66 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=97.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++.+ . .+|+++|+|+.|++.+++++...++ .++++.++|+.+++.++++||
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD 108 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------KNVEVLKSEENKIPLPDNTVD 108 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECBTTBCSSCSSCEE
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEecccccCCCCCCCee
Confidence 4466799999999999999999886 2 3799999999999999999866433 369999999999887778999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
+|+++.+++|++ +...+++++.++|+|||.+++.++...
T Consensus 109 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~ 147 (219)
T 3dh0_A 109 FIFMAFTFHELS--EPLKFLEELKRVAKPFAYLAIIDWKKE 147 (219)
T ss_dssp EEEEESCGGGCS--SHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred EEEeehhhhhcC--CHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence 999999999998 677999999999999999999987643
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-18 Score=141.18 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=92.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|..+..++.....+|+++|+|+.|++.|+++.... ..++++.++|+.+++.++++||+|+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v~ 94 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN-------NFKLNISKGDIRKLPFKDESMSFVY 94 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH-------TCCCCEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-------CCceEEEECchhhCCCCCCceeEEE
Confidence 356799999999999844444343347999999999999999987643 2468899999999887678999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+..+++|++.++...+++++.++|||||++++.++..
T Consensus 95 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 95 SYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 9999999987789999999999999999999987654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=140.48 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=93.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +++++|+|+.+++.|+++.... ..++++.++|+.+++.++++||+|++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~D~v~~ 109 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR-------ESNVEFIVGDARKLSFEDKTFDYVIF 109 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhc-------CCCceEEECchhcCCCCCCcEEEEEE
Confidence 367999999999999998888776 7999999999999999987653 25689999999988766689999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+.++++...++...+++++.++|+|||.+++.+..
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 110 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 99966666668889999999999999999998654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.5e-18 Score=144.48 Aligned_cols=108 Identities=17% Similarity=0.035 Sum_probs=93.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC-----C
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-----G 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~ 229 (280)
..++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++... .++++.++|+.+++... .
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~ 123 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA---------ANISYRLLDGLVPEQAAQIHSEI 123 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC---------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc---------cCceEEECccccccccccccccc
Confidence 34667999999999999999998877 699999999999999998743 47899999998864321 2
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+||+|+++.+++|+++++...+++++.++|||||++++.+...
T Consensus 124 ~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 124 GDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp CSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred CccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 4999999999999998889999999999999999999988754
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=144.50 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=92.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++.. +++++++|+.+++. +++||+|++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~-~~~fD~v~~ 116 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP-----------DAVLHHGDMRDFSL-GRRFSAVTC 116 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTTCCC-SCCEEEEEE
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----------CCEEEECChHHCCc-cCCcCEEEE
Confidence 457999999999999999987765 69999999999999999863 48899999999877 589999999
Q ss_pred cc-hhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 237 QW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 237 ~~-~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
.. +++|+++ +++..+++++.++|||||++++.++....
T Consensus 117 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 156 (263)
T 3pfg_A 117 MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPE 156 (263)
T ss_dssp CTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred cCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence 98 9999965 57789999999999999999998665444
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.8e-18 Score=144.10 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=92.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+++.+..+|+++|+|+.|++.|+++... .++++.++|+.+++.++++||+|+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~v~ 112 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---------TGITYERADLDKLHLPQDSFDLAY 112 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---------SSEEEEECCGGGCCCCTTCEEEEE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---------CCceEEEcChhhccCCCCCceEEE
Confidence 45679999999999999999988664799999999999999998754 368999999988877668999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+..+++|++ +...+++++.++|+|||.+++...
T Consensus 113 ~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 113 SSLALHYVE--DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp EESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Eeccccccc--hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 999999998 677999999999999999999753
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=139.90 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=87.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+ +..+++++|+|+.|++.++++. .++++.++|+.+++.++++||+|++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----------PEATWVRAWGEALPFPGESFDVVLL 101 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----------TTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEcccccCCCCCCcEEEEEE
Confidence 5679999999999999876 4437999999999999999986 2478899999988877789999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..+++|++ +...+++++.++|||||.+++.+..
T Consensus 102 ~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 102 FTTLEFVE--DVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp ESCTTTCS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cChhhhcC--CHHHHHHHHHHHcCCCCEEEEEecC
Confidence 99999998 6779999999999999999998654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=148.61 Aligned_cols=112 Identities=14% Similarity=0.086 Sum_probs=98.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..++++...+|+++|+|+.|++.|++++...++ ..++++.++|+.++++++++||+|
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~V 189 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI-----DDHVRSRVCNMLDTPFDKGAVTAS 189 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCCCCTTCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChhcCCCCCCCEeEE
Confidence 456789999999999999999988444799999999999999999877544 457999999999988777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
++..+++|++ ...+++++.++|||||++++.+.+...
T Consensus 190 ~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~ 226 (312)
T 3vc1_A 190 WNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNP 226 (312)
T ss_dssp EEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred EECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccc
Confidence 9999999984 679999999999999999999876544
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=148.03 Aligned_cols=105 Identities=18% Similarity=0.125 Sum_probs=87.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fDl 233 (280)
.++.+|||||||+|..+..+++..+.++++||+|+.|++.|+++.... ..++.++.+|..+. ..++++||.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~FD~ 131 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhC-------CCceEEEeehHHhhcccccccCCce
Confidence 467899999999999999888776668999999999999999998765 45688888887654 345678999
Q ss_pred EEc-----cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWV-----QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~-----~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+. ..+++|+. +...+++++.|+|||||+|++.+
T Consensus 132 i~~D~~~~~~~~~~~~--~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 132 ILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECC
T ss_pred EEEeeeecccchhhhc--chhhhhhhhhheeCCCCEEEEEe
Confidence 974 45666766 77899999999999999998864
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=146.14 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=94.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++... .+|+++|+|+.|++.|++++... +.++++.++|+.+++.+ ++||
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~~v~~~~~d~~~~~~~-~~fD 91 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-------PYDSEFLEGDATEIELN-DKYD 91 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS-------SSEEEEEESCTTTCCCS-SCEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc-------CCceEEEEcchhhcCcC-CCee
Confidence 45678999999999999999987744 37999999999999999997653 34799999999998775 7999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|++..+++|++ +...+++++.++|||||++++.+..
T Consensus 92 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 92 IAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEECChhhcCC--CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 999999999998 6679999999999999999998765
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=147.09 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=96.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.|++++...+ .++++.++|+.+++. +++||+|++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~-~~~fD~i~~ 190 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKEN-------LNISTALYDINAANI-QENYDFIVS 190 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCGGGCCC-CSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcC-------CceEEEEeccccccc-cCCccEEEE
Confidence 567999999999999999998866 69999999999999999987642 378999999998776 589999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
+.+++|++++++..+++++.++|+|||.+++...+..
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 227 (286)
T 3m70_A 191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMST 227 (286)
T ss_dssp CSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCC
T ss_pred ccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 9999999988899999999999999999888765543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-18 Score=145.24 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=87.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fDl 233 (280)
.++.+|||+|||+|.++..+++.+..+|+++|+|+.|++.|+++.... ..++.++++|+.++ ++++++||+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~fD~ 131 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhc-------CCCeEEEecCHHHhhcccCCCceEE
Confidence 356799999999999999887655558999999999999999988654 35689999999887 666789999
Q ss_pred EEc-cchh--hcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWV-QWCI--GHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~-~~~l--~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|++ .+.+ +.....+...+++++.++|||||+|++.+.
T Consensus 132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred EEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 999 5543 222234566889999999999999998753
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.7e-18 Score=145.10 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=91.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.+++++... ..++++..+|+.+++.++++||+|
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v 108 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGV-------DRKVQVVQADARAIPLPDESVHGV 108 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHTTTS-------CTTEEEEESCTTSCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcc-------CCceEEEEcccccCCCCCCCeeEE
Confidence 34667999999999999999987754 6999999999999999987221 357999999999988777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++..+++|++ +...+++++.++|||||++++.
T Consensus 109 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 109 IVVHLWHLVP--DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EEESCGGGCT--THHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCchhhcC--CHHHHHHHHHHHCCCCcEEEEE
Confidence 9999999998 6779999999999999999987
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.5e-18 Score=146.49 Aligned_cols=108 Identities=12% Similarity=0.064 Sum_probs=85.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++++. +|+++|+|+.|++.|++++... ....++...+.......+++||+|
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~~~~fD~V 114 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKELAGHFDFV 114 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGGGTTCCSEE
T ss_pred CCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccccCCCccEE
Confidence 45678999999999999999998876 6999999999999999998652 122223222220011113689999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+++.+++|+..++...+++++.++| |||.++++-..
T Consensus 115 v~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 115 LNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred EEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 9999999999888999999999999 99999998543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=145.74 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=94.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV 234 (280)
.++.+|||+|||+|.++..+++.+..+|+++|+|+.|++.|++++...+. ..++++.++|+.+.+. .+++||+|
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD~v 137 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDSYGRHMDLGKEFDVI 137 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CccEEEEECCccccccCCCCCcCEE
Confidence 45679999999999999988877665899999999999999999876433 3568999999998876 46899999
Q ss_pred Eccchhhc--CChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGH--LTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~--~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++..+++| ...++...+++++.++|||||++++...
T Consensus 138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99999988 5556888999999999999999999854
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=142.43 Aligned_cols=101 Identities=12% Similarity=0.126 Sum_probs=88.5
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fDl 233 (280)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++ +++..+|+.++ ++++++||+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~--------------~~~~~~d~~~~~~~~~~~~fD~ 104 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK--------------FNVVKSDAIEYLKSLPDKYLDG 104 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT--------------SEEECSCHHHHHHTSCTTCBSE
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh--------------cceeeccHHHHhhhcCCCCeeE
Confidence 4568999999999999999988866 599999999999999865 45677887765 555689999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|++..+++|++++++..+++++.++|||||++++....
T Consensus 105 i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 105 VMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred EEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 99999999999888899999999999999999998654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-18 Score=148.95 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=96.6
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~ 218 (280)
..++...+. ..++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++....+. .....++.+..
T Consensus 46 ~~~l~~~l~-------~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~ 115 (293)
T 3thr_A 46 KAWLLGLLR-------QHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRK--EPAFDKWVIEE 115 (293)
T ss_dssp HHHHHHHHH-------HTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTT--SHHHHTCEEEE
T ss_pred HHHHHHHhc-------ccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhccc--ccccceeeEee
Confidence 345555554 23567999999999999999998876 699999999999999987632211 00024678888
Q ss_pred ccCCCCC---CCCCcEEEEEcc-chhhcCCh-----hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 219 VPLQDFT---PETGRYDVIWVQ-WCIGHLTD-----DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 219 ~d~~~~~---~~~~~fDlV~~~-~~l~~~~~-----~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|+.+++ +.+++||+|++. .+++|+++ +++..+++++.++|||||++++..+
T Consensus 116 ~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 116 ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9987766 556899999998 89999996 5588999999999999999998753
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-17 Score=137.04 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=96.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++....++... ...++++.++|+.+++..+++||+|++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQK-TGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSS-SSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccc-cCcceEEEEecccccCCCCCceeEEEE
Confidence 567999999999999999998855 699999999999999999877543211 123689999999998877789999999
Q ss_pred cchhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 237 QWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 237 ~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+.+++|+++ .+...+++++.++|||||.+++.+...
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 999999974 335689999999999999999987643
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-17 Score=144.39 Aligned_cols=109 Identities=25% Similarity=0.362 Sum_probs=92.0
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
+.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|++++...+. ....+++++++|+.++++ +++||+|++.
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~---~~~~~v~~~~~d~~~~~~-~~~fD~v~~~ 157 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPA---DVRDRCTLVQGDMSAFAL-DKRFGTVVIS 157 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCH---HHHTTEEEEECBTTBCCC-SCCEEEEEEC
T ss_pred CCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhccc---ccccceEEEeCchhcCCc-CCCcCEEEEC
Confidence 45999999999999999998865 599999999999999999876421 001569999999999877 4899999865
Q ss_pred -chhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 238 -WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 238 -~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.+++|+++++...+++++.++|||||+|++....
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 158 SGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 7788888778899999999999999999997543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-17 Score=144.02 Aligned_cols=105 Identities=19% Similarity=0.251 Sum_probs=90.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcC-CCCCCCCCcceeEEEccCCCCCCCC----
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPET---- 228 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~---- 228 (280)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.|++.|++++... +. ..+++|+++|+.+++..+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~ 109 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-----YKNVSFKISSSDDFKFLGADSV 109 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C-----CTTEEEEECCTTCCGGGCTTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----CCceEEEEcCHHhCCccccccc
Confidence 367899999999999999999743 458999999999999999987653 11 357999999999987655
Q ss_pred --CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 229 --GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 229 --~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++||+|+++.+++|+ ++..+++++.++|||||.|++.
T Consensus 110 ~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 110 DKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp TSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEE
Confidence 799999999999999 5679999999999999999984
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=142.64 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=95.8
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
.++..++... . ..++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++.... ..++++.++
T Consensus 28 ~~~~~~~~~~-~---~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~-------~~~v~~~~~ 95 (252)
T 1wzn_A 28 DFVEEIFKED-A---KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKER-------NLKIEFLQG 95 (252)
T ss_dssp HHHHHHHHHT-C---SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCCEEEES
T ss_pred HHHHHHHHHh-c---ccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhc-------CCceEEEEC
Confidence 4556655432 1 34567999999999999999998865 6999999999999999987653 236899999
Q ss_pred cCCCCCCCCCcEEEEEcc-chhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 220 PLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 220 d~~~~~~~~~~fDlV~~~-~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+.+++.+ ++||+|++. ..++|++.++...+++++.++|+|||.+++.-
T Consensus 96 d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 96 DVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp CGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 99887765 689999987 45677777788999999999999999998863
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-18 Score=146.65 Aligned_cols=133 Identities=16% Similarity=0.078 Sum_probs=95.6
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCC--CC--------
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM--AP-------- 208 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~--~~-------- 208 (280)
..++...+.+.+.. ...++.+|||||||+|.++..++..++.+|+++|+|+.|++.|++++...... +.
T Consensus 38 ~~~~~~~~~~~~~~-~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~ 116 (263)
T 2a14_A 38 LKFNLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACE 116 (263)
T ss_dssp HHHHHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHh
Confidence 34555555444321 14467899999999998887666677667999999999999999876542100 00
Q ss_pred --C-----------CCccee-EEEccCCCC-CC---CCCcEEEEEccchhhcCC--hhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 209 --D-----------MHKATN-FFCVPLQDF-TP---ETGRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 209 --~-----------~~~~i~-~~~~d~~~~-~~---~~~~fDlV~~~~~l~~~~--~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
. ...++. ++++|+.+. +. ..++||+|++++++||+. .+++..++++++++|||||+|+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 117 LEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp HTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 0 001233 889998874 22 246899999999999863 257789999999999999999999
Q ss_pred eccC
Q 023562 269 ENIA 272 (280)
Q Consensus 269 e~~~ 272 (280)
+.+.
T Consensus 197 ~~~~ 200 (263)
T 2a14_A 197 VTLR 200 (263)
T ss_dssp EESS
T ss_pred Eeec
Confidence 7543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.5e-17 Score=138.35 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=90.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..+++.. ..+|+++|+|+.|++.++++. .++++..+|+.+++ .+++||+
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~-~~~~fD~ 98 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----------PNTNFGKADLATWK-PAQKADL 98 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----------TTSEEEECCTTTCC-CSSCEEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------CCcEEEECChhhcC-ccCCcCE
Confidence 4567899999999999999998874 237999999999999999883 35889999999887 5689999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|+++.+++|++ +...+++++.++|||||++++.++
T Consensus 99 v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 99 LYANAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp EEEESCGGGST--THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EEEeCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 99999999997 677999999999999999999865
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7.2e-17 Score=134.21 Aligned_cols=105 Identities=24% Similarity=0.234 Sum_probs=89.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++ +|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++.... ..++.+.++|+.+++.++++||+|++
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEK-------GVKITTVQSNLADFDIVADAWEGIVS 100 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHH-------TCCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhc-------CCceEEEEcChhhcCCCcCCccEEEE
Confidence 44 999999999999998887765 6999999999999999987653 23689999999988766689999998
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+ +.|++.++...+++++.++|+|||.+++.+...
T Consensus 101 ~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 101 I--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp E--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred E--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 5 346666788999999999999999999987653
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=140.54 Aligned_cols=115 Identities=21% Similarity=0.348 Sum_probs=95.5
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
.++...+... ..++.+|||+|||+|.++..+++.+. +++++|+|+.|++.|+++.... ..++++.++
T Consensus 25 ~~~~~~l~~~-----~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~-------~~~~~~~~~ 91 (246)
T 1y8c_A 25 DFIIEKCVEN-----NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQ-------GLKPRLACQ 91 (246)
T ss_dssp HHHHHHHHTT-----TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHT-------TCCCEEECC
T ss_pred HHHHHHHHHh-----CCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhc-------CCCeEEEec
Confidence 4555555432 12567999999999999999987765 6999999999999999987653 226899999
Q ss_pred cCCCCCCCCCcEEEEEccc-hhhcCCh-hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 220 PLQDFTPETGRYDVIWVQW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 220 d~~~~~~~~~~fDlV~~~~-~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+.+++.+ ++||+|++.. +++|+++ ++...+++++.++|+|||++++.
T Consensus 92 d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 92 DISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99888766 7999999998 9999943 57889999999999999999985
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=147.47 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=85.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCC------CC--CCCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ------DF--TPET 228 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~------~~--~~~~ 228 (280)
++.+|||+|||+|..+..++..+..+|+|+|+|+.||+.|+++....+........+++|.+.|+. ++ +.++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 467999999999987766776665679999999999999999875432100000013678888772 22 1345
Q ss_pred CcEEEEEccchhhcC-ChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 229 GRYDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~-~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++||+|+|.+++||+ .+++...++++++++|||||+++++..
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 799999999999986 334678999999999999999999754
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.4e-17 Score=132.77 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=90.8
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~ 218 (280)
..+...++... ..++.+|||+|||+|.++..+++. ..+|+++|+|+.|++.|++++...++ .++++++
T Consensus 9 ~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~ 76 (185)
T 3mti_A 9 IHMSHDFLAEV-----LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI------ENTELIL 76 (185)
T ss_dssp HHHHHHHHHTT-----CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC------CCEEEEE
T ss_pred HHHHHHHHHHh-----CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEe
Confidence 34555555543 346789999999999999999877 44799999999999999999876432 4688998
Q ss_pred ccCCCCC-CCCCcEEEEEccchhhcC-------ChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 219 VPLQDFT-PETGRYDVIWVQWCIGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 219 ~d~~~~~-~~~~~fDlV~~~~~l~~~-------~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.+..++. ..+++||+|+++....+. ...+...+++++.++|||||.+++..+..
T Consensus 77 ~~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 77 DGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp SCGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred CcHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 8877643 235789999987432221 22456789999999999999999986643
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-17 Score=151.61 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=94.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCC--CCCCCcceeEEEccCCCC------C
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHM--APDMHKATNFFCVPLQDF------T 225 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~--~~~~~~~i~~~~~d~~~~------~ 225 (280)
.++.+|||+|||+|.++..+++... .+|+++|+|+.|++.|++++...... ......+++|+++|+.++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 4667999999999999999988742 27999999999999999986432000 000025799999999987 6
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+++++||+|+++.+++|++ +...+++++.++|||||++++.+...
T Consensus 162 ~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLST--NKLALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp CCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCCCCEEEEEEccchhcCC--CHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 6678999999999999998 67799999999999999999987654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=142.92 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=88.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++. +++|.++|+++++.++++||+|
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------------~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 32 LPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP------------QVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT------------TEEEECCCTTSCCSCTTCBSEE
T ss_pred CCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc------------CCEEEECchhhCCCCCCCEeEE
Confidence 34678999999999999999987654 6999999999998775542 6899999999988777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++..+++|++ +...+++++.++|| ||++++.+..
T Consensus 99 ~~~~~l~~~~--~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 99 ISILAIHHFS--HLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp EEESCGGGCS--SHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred EEcchHhhcc--CHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 9999999997 77899999999999 9988887654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-17 Score=143.53 Aligned_cols=113 Identities=20% Similarity=0.276 Sum_probs=90.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCC-----------------------------
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHM----------------------------- 206 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~----------------------------- 206 (280)
++.+|||+|||+|.++..++.... .+|+|+|+|+.|++.|++++...+..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 567999999999999999998843 48999999999999999987653311
Q ss_pred -----------------------CCCCCcceeEEEccCCCCC-----CCCCcEEEEEccchhhcC----ChhhHHHHHHH
Q 023562 207 -----------------------APDMHKATNFFCVPLQDFT-----PETGRYDVIWVQWCIGHL----TDDDFVSFFKR 254 (280)
Q Consensus 207 -----------------------~~~~~~~i~~~~~d~~~~~-----~~~~~fDlV~~~~~l~~~----~~~d~~~~l~~ 254 (280)
...+..+++|.++|+.... ..+++||+|+|..+++|+ +++++..++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 0112257999999987654 345899999999999887 56688899999
Q ss_pred HHHcCCCCcEEEEEe
Q 023562 255 AKVGLKPGGFFVLKE 269 (280)
Q Consensus 255 ~~r~LkpGG~lii~e 269 (280)
++++|+|||+|++..
T Consensus 206 ~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 206 IYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHEEEEEEEEEEC
T ss_pred HHHHhCCCcEEEEec
Confidence 999999999999863
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=134.09 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=90.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++.. ++++.++|+.+++. +++||+|+|
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~-~~~~D~v~~ 106 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP-----------DATLHQGDMRDFRL-GRKFSAVVS 106 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT-----------TCEEEECCTTTCCC-SSCEEEEEE
T ss_pred CCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC-----------CCEEEECCHHHccc-CCCCcEEEE
Confidence 457999999999999999998876 69999999999999998852 47899999998876 579999995
Q ss_pred c-chhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 237 Q-WCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 237 ~-~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
. .+++|+.+ +++..+++++.++|+|||.+++.+.....
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (239)
T 3bxo_A 107 MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPE 146 (239)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred cCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcc
Confidence 4 59999964 57889999999999999999998765543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=130.71 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=90.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.. ++.+.++|+.+++.++++||+|++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~-----------~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP-----------EARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTTSCCCCCCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC-----------CCcEEEcccccCCCCCCceeEEEE
Confidence 567999999999999999988755 69999999999999999863 378899999988766689999999
Q ss_pred c-chhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 237 Q-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 237 ~-~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+ .+++|+++++...+++++.++|+|||.+++...
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~ 148 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFG 148 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 8 789999878889999999999999999999754
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=139.97 Aligned_cols=102 Identities=19% Similarity=0.238 Sum_probs=89.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++. .++.+..+|+.+++++ ++||+|
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~-~~fD~v 121 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY-----------PHLHFDVADARNFRVD-KPLDAV 121 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----------TTSCEEECCTTTCCCS-SCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC-----------CCCEEEECChhhCCcC-CCcCEE
Confidence 34567999999999999999988544 6999999999999999875 2478999999998764 799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+++.+++|++ +...+++++.++|||||++++..+.
T Consensus 122 ~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 122 FSNAMLHWVK--EPEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEcchhhhCc--CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999999998 6779999999999999999998654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-17 Score=131.36 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=89.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++. .++++..+| .+.++++||+|
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----------~~v~~~~~d---~~~~~~~~D~v 79 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKF-----------DSVITLSDP---KEIPDNSVDFI 79 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHC-----------TTSEEESSG---GGSCTTCEEEE
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhC-----------CCcEEEeCC---CCCCCCceEEE
Confidence 34667999999999999999988776 7999999999999999982 358888888 44556799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
+++.+++|++ +...+++++.++|||||.+++.+....
T Consensus 80 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~ 116 (170)
T 3i9f_A 80 LFANSFHDMD--DKQHVISEVKRILKDDGRVIIIDWRKE 116 (170)
T ss_dssp EEESCSTTCS--CHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred EEccchhccc--CHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence 9999999997 677999999999999999999987654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=143.87 Aligned_cols=111 Identities=14% Similarity=0.218 Sum_probs=97.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fDl 233 (280)
.+.+|||||||+|.++..++++++. +++++|+ +.|++.|++++...++ ..+++|..+|+.+. +.+ ++||+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~p-~~~D~ 251 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG-----SERIHGHGANLLDRDVPFP-TGFDA 251 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT-----GGGEEEEECCCCSSSCCCC-CCCSE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc-----ccceEEEEccccccCCCCC-CCcCE
Confidence 4579999999999999999987655 8999999 9999999999876543 45799999999886 344 78999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
|++.+++|++++++...++++++++|||||++++.|.+...
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (363)
T 3dp7_A 252 VWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR 292 (363)
T ss_dssp EEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred EEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence 99999999999888899999999999999999999987643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.8e-17 Score=142.37 Aligned_cols=112 Identities=16% Similarity=0.031 Sum_probs=94.3
Q ss_pred CCCCccEEEeecCccHHHHHHH-Hhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLL-IRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~-~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..++ ... ..+|+++|+|+.|++.|++++...++ ..+++++++|+.+++++ ++||
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~fD 189 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL-----AGQITLHRQDAWKLDTR-EGYD 189 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEECCGGGCCCC-SCEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECchhcCCcc-CCeE
Confidence 3467899999999999999885 233 23899999999999999999987644 45699999999998876 8999
Q ss_pred EEEccchhhcCChh-hHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 233 VIWVQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 233 lV~~~~~l~~~~~~-d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+|+++.+++|++++ ....+++++.++|||||++++.+...
T Consensus 190 ~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 190 LLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp EEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred EEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 99999999999743 33568999999999999999987654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=137.59 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=90.0
Q ss_pred CccEEEeecCc---cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 158 HLVALDCGSGI---GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 158 ~~~VLDlGcG~---G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
..+|||||||+ |.++..+.+.... +|+++|+|+.|++.|++++.. ..+++|+++|+.+..
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--------~~~v~~~~~D~~~~~~~~~~~~~ 149 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--------DPNTAVFTADVRDPEYILNHPDV 149 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--------CTTEEEEECCTTCHHHHHHSHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--------CCCeEEEEeeCCCchhhhccchh
Confidence 46899999999 9888766555433 799999999999999999854 356999999997631
Q ss_pred ---CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 226 ---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 226 ---~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++..+||+|+++.++||+++++...+++++.++|+|||+|++++...
T Consensus 150 ~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 150 RRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred hccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 22248999999999999997778999999999999999999998764
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=134.96 Aligned_cols=102 Identities=22% Similarity=0.274 Sum_probs=88.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++. .+|+++|+|+.|++.|+++.... ..++++.++|+.+++.+ ++||+|++
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~-~~fD~v~~ 102 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMET-------NRHVDFWVQDMRELELP-EPVDAITI 102 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHT-------TCCCEEEECCGGGCCCS-SCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhc-------CCceEEEEcChhhcCCC-CCcCEEEE
Confidence 4579999999999999988876 57999999999999999987653 24689999999888765 79999999
Q ss_pred cc-hhhcC-ChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 237 QW-CIGHL-TDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 237 ~~-~l~~~-~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.. +++|+ +.++...+++++.++|+|||.+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 103 LCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 86 99998 4467889999999999999999984
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=141.39 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=81.6
Q ss_pred CCCccEEEeecCccHHHHHHH----HhcCC-c--EEEEeCCHHHHHHHHHHcCcC-CCCCCCCCcceeEEEccCCCCC--
Q 023562 156 NQHLVALDCGSGIGRITKNLL----IRYFN-E--VDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFT-- 225 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~----~~~~~-~--v~~vD~S~~~l~~A~~~~~~~-~~~~~~~~~~i~~~~~d~~~~~-- 225 (280)
.++.+|||||||+|.++..++ .++.. . ++++|+|+.|++.|++++... ++ ...+..+..+++++++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~----~~v~~~~~~~~~~~~~~~ 126 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL----ENVKFAWHKETSSEYQSR 126 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC----TTEEEEEECSCHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC----CcceEEEEecchhhhhhh
Confidence 456799999999998765443 33332 2 399999999999999987542 11 0112344455554432
Q ss_pred ----CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 226 ----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 226 ----~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+++++||+|++..+++|++ ++..+++++.++|||||++++.+..
T Consensus 127 ~~~~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 127 MLEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp HHTTTCCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hccccCCCceeEEEEeeeeeecC--CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 3457999999999999999 6779999999999999999998643
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.5e-16 Score=139.10 Aligned_cols=112 Identities=15% Similarity=0.120 Sum_probs=95.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..+..+|||+|||+|.++..+++.++. +++++|+ +.+++.|++++...++ ..+++|..+|+.+ +.+ .+||+
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~p-~~~D~ 238 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL-----SGRAQVVVGSFFD-PLP-AGAGG 238 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTS-CCC-CSCSE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc-----CcCeEEecCCCCC-CCC-CCCcE
Confidence 345679999999999999999987665 7999999 9999999998876443 4679999999973 333 38999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
|++.+++||+++++...++++++++|+|||++++.|.+...
T Consensus 239 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 279 (332)
T 3i53_A 239 YVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD 279 (332)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred EEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence 99999999999887899999999999999999999987654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8e-17 Score=139.18 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=91.2
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCC--------------CCC---------CCc
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM--------------APD---------MHK 212 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~--------------~~~---------~~~ 212 (280)
.++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++...+.. ... ...
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 456799999999999999888776657999999999999999988653100 000 001
Q ss_pred ce-eEEEccCCCCCC-CC---CcEEEEEccchhhcCCh--hhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 213 AT-NFFCVPLQDFTP-ET---GRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 213 ~i-~~~~~d~~~~~~-~~---~~fDlV~~~~~l~~~~~--~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++ ++..+|+.+..+ .+ ++||+|+++.+++|+.+ +++..+++++.++|||||++++.+..
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 26 899999988643 44 78999999999996544 37889999999999999999998754
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=139.86 Aligned_cols=115 Identities=14% Similarity=0.182 Sum_probs=84.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCC------------CC------------CCc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA------------PD------------MHK 212 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~------------~~------------~~~ 212 (280)
++.+|||+|||+|..+..++.....+|+++|+|+.|++.|++++....... .. ...
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 567999999999996553333344589999999999999998765321000 00 000
Q ss_pred ceeEEEccCCC-CCC-----CCCcEEEEEccchhhcCChh--hHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 213 ATNFFCVPLQD-FTP-----ETGRYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 213 ~i~~~~~d~~~-~~~-----~~~~fDlV~~~~~l~~~~~~--d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.++++.+|+.+ +++ ++++||+|+++++++|+.++ ++..+++++.++|||||+|++.+..
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~ 217 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL 217 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 14567778877 442 23579999999999996543 7889999999999999999998543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-16 Score=129.97 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=91.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDl 233 (280)
.++.+|||+|||+|.++..+++.+..+|+++|+|+.|++.|++++...++ .+++++++|+.++. .++++||+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~fD~ 116 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL------SGATLRRGAVAAVVAAGTTSPVDL 116 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC------SCEEEEESCHHHHHHHCCSSCCSE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC------CceEEEEccHHHHHhhccCCCccE
Confidence 35679999999999999988887776899999999999999999876532 46899999988763 33579999
Q ss_pred EEccchhhcCChhhHHHHHHHHHH--cCCCCcEEEEEecc
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKENI 271 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii~e~~ 271 (280)
|+++..+++. .+++..+++.+.+ +|+|||++++....
T Consensus 117 i~~~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 117 VLADPPYNVD-SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp EEECCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred EEECCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 9999887664 2477899999999 99999999997543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=138.35 Aligned_cols=112 Identities=21% Similarity=0.297 Sum_probs=96.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..+..+|||+|||+|.++..++++++. +++++|+ +.+++.|++++...++ ..+++|..+|+.+ +.+ .+||+
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l-----~~~v~~~~~d~~~-~~p-~~~D~ 271 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL-----ADRCEILPGDFFE-TIP-DGADV 271 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTT-CCC-SSCSE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc-----CCceEEeccCCCC-CCC-CCceE
Confidence 445689999999999999999988655 7999999 9999999998876543 4679999999973 333 38999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
|++.+++|++++++...++++++++|+|||++++.|.+...
T Consensus 272 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 312 (369)
T 3gwz_A 272 YLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE 312 (369)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred EEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 99999999999887789999999999999999999987654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-16 Score=138.51 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=96.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..+++.... +++++|+| .+++.|++++...++ ..++++..+|+.+.+.+ ..||+|
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~~D~v 236 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV-----ASRYHTIAGSAFEVDYG-NDYDLV 236 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC-----GGGEEEEESCTTTSCCC-SCEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC-----CcceEEEecccccCCCC-CCCcEE
Confidence 45679999999999999999988543 79999999 999999998765433 34699999999876655 459999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
++.+++||+++++...+++++.++|+|||++++.|.+...
T Consensus 237 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 276 (335)
T 2r3s_A 237 LLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNS 276 (335)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCT
T ss_pred EEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Confidence 9999999999888899999999999999999999987643
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-16 Score=140.13 Aligned_cols=110 Identities=20% Similarity=0.254 Sum_probs=96.3
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVI 234 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDlV 234 (280)
+.+|||+|||+|.++..+++.++. +++++|+ +.+++.+++++...++ ..++++..+|+.+.+ ++ +.||+|
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~-~~~D~v 252 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL-----GGRVEFFEKNLLDARNFEG-GAADVV 252 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC-----GGGEEEEECCTTCGGGGTT-CCEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC-----CCceEEEeCCcccCcccCC-CCccEE
Confidence 689999999999999999988655 8999999 8899999998776433 457999999998865 33 679999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
++.+++||+++++...+++++.++|+|||++++.|.+...
T Consensus 253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (352)
T 3mcz_A 253 MLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND 292 (352)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred EEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 9999999999888899999999999999999999987543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-16 Score=142.28 Aligned_cols=214 Identities=15% Similarity=0.172 Sum_probs=132.8
Q ss_pred CCcceeeeehhhHHHHHHHHhhhccCCCCCCCcccccccccCCCcccccHHHHHHHhhcCCcccch-hhh--HHHH----
Q 023562 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQE-KKT--QWYR---- 107 (280)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~w~~~l~~~~~~~~-~~~--~~y~---- 107 (280)
....-++.+|+.+..++...+.+...- +....+...|....| ..++.++....... .+.. ..+ .++.
T Consensus 76 ~~~~~~~~~pk~~~~~~~~l~~~~~~~--~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~ 149 (343)
T 2pjd_A 76 DCDTLIYYWPKNKPEAQFQLMNLLSLL--PVGTDIFVVGENRSG--VRSAEQMLADYAPL--NKVDSARRCGLYFGRLEK 149 (343)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHHTTS--CTTCEEEEEEEGGGT--GGGHHHHHTTTSCC--EEECCCTTEEEEEEECCS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHHhC--CCCCEEEEEEecCCC--HHhHHHHHHHhcCc--chhhhhhcceeEEeeccc
Confidence 456678999999999998887766632 112334455655555 45566655543211 1100 000 0000
Q ss_pred ----HHHhhhhcccccccccccCcccccc-ccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-
Q 023562 108 ----EGISYWEGVEASVDGVLGGFGNVNE-VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN- 181 (280)
Q Consensus 108 ----~~~~yW~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~- 181 (280)
....||..... .+..+.....++. ..+......+...+. ...+.+|||+|||+|.++..+++.+..
T Consensus 150 ~~~~~~~~~~~~y~~-~~~~~~~~~gvf~~~~~d~~~~~ll~~l~-------~~~~~~VLDlGcG~G~~~~~la~~~~~~ 221 (343)
T 2pjd_A 150 QPVFDAEKFWGEYSV-DGLTVKTLPGVFSRDGLDVGSQLLLSTLT-------PHTKGKVLDVGCGAGVLSVAFARHSPKI 221 (343)
T ss_dssp CCCCCGGGGCEEEEE-TTEEEEECTTCTTSSSCCHHHHHHHHHSC-------TTCCSBCCBTTCTTSHHHHHHHHHCTTC
T ss_pred CCCCCchhhcceeec-cceEEEecCCccCCCCCcHHHHHHHHhcC-------cCCCCeEEEecCccCHHHHHHHHHCCCC
Confidence 01122221110 0000001111111 122222344444332 224568999999999999999988764
Q ss_pred cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcC---ChhhHHHHHHHHHHc
Q 023562 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHL---TDDDFVSFFKRAKVG 258 (280)
Q Consensus 182 ~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~---~~~d~~~~l~~~~r~ 258 (280)
+|+++|+|+.|++.+++++...+ ..+++..+|+.+.. +++||+|+++.++|+. ..++...+++++.++
T Consensus 222 ~v~~vD~s~~~l~~a~~~~~~~~-------~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~ 292 (343)
T 2pjd_A 222 RLTLCDVSAPAVEASRATLAANG-------VEGEVFASNVFSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRH 292 (343)
T ss_dssp BCEEEESBHHHHHHHHHHHHHTT-------CCCEEEECSTTTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGG
T ss_pred EEEEEECCHHHHHHHHHHHHHhC-------CCCEEEEccccccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHh
Confidence 89999999999999999987643 23677888887654 4799999999988762 334678999999999
Q ss_pred CCCCcEEEEEecc
Q 023562 259 LKPGGFFVLKENI 271 (280)
Q Consensus 259 LkpGG~lii~e~~ 271 (280)
|||||.+++..|.
T Consensus 293 LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 293 LNSGGELRIVANA 305 (343)
T ss_dssp EEEEEEEEEEEET
T ss_pred CCCCcEEEEEEcC
Confidence 9999999998764
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.4e-16 Score=133.47 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=85.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++... .+.++|+.+++.++++||+|++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~------------~~~~~d~~~~~~~~~~fD~v~~ 120 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK------------NVVEAKAEDLPFPSGAFEAVLA 120 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS------------CEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCC------------CEEECcHHHCCCCCCCEEEEEE
Confidence 567999999999999999987755 699999999999999988641 2788999988877789999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
..++.|+.+ +...+++++.++|||||.+++...
T Consensus 121 ~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 121 LGDVLSYVE-NKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp CSSHHHHCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhhccc-cHHHHHHHHHHHcCCCeEEEEEeC
Confidence 887766632 478999999999999999998743
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=126.17 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=88.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|++++...++ .++++.++|+.+.....++||+
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~D~ 111 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA------RNVTLVEAFAPEGLDDLPDPDR 111 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC------TTEEEEECCTTTTCTTSCCCSE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEeCChhhhhhcCCCCCE
Confidence 45678999999999999999998863 3899999999999999998876432 4689999999765444468999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|++..+++ +...+++++.++|+|||.+++...
T Consensus 112 i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 112 VFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp EEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 99988764 566899999999999999999754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.6e-16 Score=134.42 Aligned_cols=111 Identities=13% Similarity=-0.009 Sum_probs=91.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHH------HHHHHHHHcCcCCCCCCCCCcceeEEEcc-C--CC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSH------FLDAARESLAPENHMAPDMHKATNFFCVP-L--QD 223 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~------~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-~--~~ 223 (280)
..++.+|||+|||+|.++..+++.+ . .+|+++|+|+. |++.|++++...++ ..++++..+| + ..
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~ 115 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL-----GDRLTVHFNTNLSDDL 115 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----GGGEEEECSCCTTTCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC-----CCceEEEECChhhhcc
Confidence 4567899999999999999999885 3 47999999997 99999999876533 3579999998 3 33
Q ss_pred CCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 224 ~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+++++++||+|+++.+++|+++. ..+++.+.++++|||++++.+...
T Consensus 116 ~~~~~~~fD~v~~~~~l~~~~~~--~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 116 GPIADQHFDRVVLAHSLWYFASA--NALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp GGGTTCCCSEEEEESCGGGSSCH--HHHHHHHHHHTTTCSEEEEEEECS
T ss_pred CCCCCCCEEEEEEccchhhCCCH--HHHHHHHHHHhCCCCEEEEEEecC
Confidence 34456899999999999999854 468888888888899999988664
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=125.74 Aligned_cols=112 Identities=12% Similarity=-0.007 Sum_probs=89.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (280)
..++.+|||+|||+|.++..+++... .+|+++|+|+.+++.|++++...++ ..+++++++|+.+++ ..+++|
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~f 94 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-----IDRVTLIKDGHQNMDKYIDCPV 94 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC-----GGGEEEECSCGGGGGGTCCSCE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHHHHhhhccCCc
Confidence 34567999999999999999988732 3799999999999999999877543 357999999988775 445799
Q ss_pred EEEEccchhh-------cCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 232 DVIWVQWCIG-------HLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 232 DlV~~~~~l~-------~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+|+++..+. .....+...+++++.++|||||++++....
T Consensus 95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 9999886541 111235567999999999999999998754
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-16 Score=138.08 Aligned_cols=114 Identities=13% Similarity=0.142 Sum_probs=90.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCC-CCCCCcceeEEEccCCCCC----C--CCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFT----P--ETG 229 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~----~--~~~ 229 (280)
++.+|||+|||+|.++..+++....+|+++|+|+.|++.|+++....+.. ......++++.++|+.+++ + +++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 56799999999999999998765558999999999999999987532100 0000236899999998875 3 235
Q ss_pred cEEEEEccchhhcC--ChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 230 RYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 230 ~fDlV~~~~~l~~~--~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+||+|+++.++||+ +.++...+++++.++|||||+++++..
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 89999999999998 335678999999999999999999754
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=136.47 Aligned_cols=111 Identities=15% Similarity=0.192 Sum_probs=95.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..++++++. +++++|+ +.+++.|++++...++ ..++++..+|+.+.+.++ +|+
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~--~D~ 259 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKESYPE--ADA 259 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC-----TTTEEEEECCTTTSCCCC--CSE
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC-----CCCEEEEeCccccCCCCC--CCE
Confidence 446679999999999999999988654 7999999 9999999998876443 346999999998876543 499
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
|++..++||+++++...+++++.++|+|||++++.|.+..
T Consensus 260 v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 299 (359)
T 1x19_A 260 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 299 (359)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred EEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence 9999999999987789999999999999999999997754
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-16 Score=141.72 Aligned_cols=109 Identities=21% Similarity=0.213 Sum_probs=92.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+..+|+++|+| .|++.|++++...++ ..+++++++|+.+++.+ ++||+|
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~~D~I 133 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNL-----DHIVEVIEGSVEDISLP-EKVDVI 133 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTC-----TTTEEEEESCGGGCCCS-SCEEEE
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCC-----CCeEEEEECchhhcCcC-CcceEE
Confidence 45678999999999999999998877689999999 999999999887654 45699999999998876 899999
Q ss_pred EccchhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++..+.+++.. ..+..+++.+.++|||||++++.+.
T Consensus 134 v~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 134 ISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp EECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred EEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 99765555432 3577899999999999999987643
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-16 Score=133.11 Aligned_cols=99 Identities=23% Similarity=0.298 Sum_probs=82.2
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC---CCC-CCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPE-TGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~-~~~fD 232 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++. ++.+...++.++ +.. ..+||
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------------~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAG------------AGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHTC------------SSCEEECCHHHHHTTCSCCCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhc------------ccccchhhHHhhcccccccCCCcc
Confidence 457999999999999999988755 6999999999999999871 256677776655 322 34699
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|+++.+++ .. +...+++++.++|||||++++.+..
T Consensus 119 ~v~~~~~l~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 154 (227)
T 3e8s_A 119 LICANFALL-HQ--DIIELLSAMRTLLVPGGALVIQTLH 154 (227)
T ss_dssp EEEEESCCC-SS--CCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEECchhh-hh--hHHHHHHHHHHHhCCCeEEEEEecC
Confidence 999999998 44 6679999999999999999998764
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=123.99 Aligned_cols=105 Identities=17% Similarity=0.086 Sum_probs=84.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++... .+|+++|+|+.+++.|++++...++ ..++ ++.+|..+ ++..+++||
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~-~~~~d~~~~~~~~~~~~D 96 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV-----SDRI-AVQQGAPRAFDDVPDNPD 96 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC-----TTSE-EEECCTTGGGGGCCSCCS
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC-----CCCE-EEecchHhhhhccCCCCC
Confidence 45677999999999999999887753 3799999999999999999876543 3357 77787744 332227899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|++..+++| ..+++++.++|+|||++++.+..
T Consensus 97 ~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 97 VIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp EEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred EEEECCcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence 9999999887 36999999999999999987643
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=136.94 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=88.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+..+|+++|+|+ |++.|++++...++ ..+++++.+|+.+++.++++||+|
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~I 135 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKL-----EDTITLIKGKIEEVHLPVEKVDVI 135 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTSCCSCSCEEEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCC-----CCcEEEEEeeHHHhcCCCCcEEEE
Confidence 345679999999999999999888766899999997 99999998876544 467999999999988776899999
Q ss_pred Eccc---hhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 235 WVQW---CIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 235 ~~~~---~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
++.+ .+.+.. ++..++.++.++|||||.++
T Consensus 136 vs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 136 ISEWMGYFLLFES--MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EECCCBTTBTTTC--HHHHHHHHHHHHEEEEEEEE
T ss_pred EEcCchhhccCHH--HHHHHHHHHHhhcCCCcEEE
Confidence 9876 454544 67789999999999999998
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=137.24 Aligned_cols=110 Identities=17% Similarity=0.236 Sum_probs=93.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..+++.+.. +++++|+ +.+++.|++++...++ ..++++..+|+.+ +.+ ..||+
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~~-~~~D~ 251 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL-----ADRVTVAEGDFFK-PLP-VTADV 251 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTS-CCS-CCEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC-----CCceEEEeCCCCC-cCC-CCCCE
Confidence 345679999999999999999988654 7999999 9999999998866443 3479999999876 233 35999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec--cC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN--IA 272 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~--~~ 272 (280)
|++..++||+++++...+++++.++|+|||++++.|. +.
T Consensus 252 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (374)
T 1qzz_A 252 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVE 292 (374)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH--
T ss_pred EEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhc
Confidence 9999999999987778999999999999999999998 64
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-16 Score=130.06 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=87.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCC-cceeEEEccCCCCCC--CCCc-EE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDFTP--ETGR-YD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~--~~~~-fD 232 (280)
++.+|||+|||+|.++..++.++..+|+++|+|+.|++.|++++...++ . .+++++++|+.++.. .+++ ||
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~fD 127 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKC-----SSEQAEVINQSSLDFLKQPQNQPHFD 127 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-----CTTTEEEECSCHHHHTTSCCSSCCEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCC-----CccceEEEECCHHHHHHhhccCCCCC
Confidence 4569999999999999988888776899999999999999999876532 1 468999999876532 2468 99
Q ss_pred EEEccchhhcCChhhHHHHHHHH--HHcCCCCcEEEEEeccC
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRA--KVGLKPGGFFVLKENIA 272 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~--~r~LkpGG~lii~e~~~ 272 (280)
+|+++..++ .. +...+++.+ .++|+|||.+++..+..
T Consensus 128 ~I~~~~~~~-~~--~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 128 VVFLDPPFH-FN--LAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp EEEECCCSS-SC--HHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred EEEECCCCC-Cc--cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 999987754 33 667889998 67899999999976543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=139.88 Aligned_cols=222 Identities=19% Similarity=0.200 Sum_probs=137.6
Q ss_pred cceeeeehhhH--HHHHHHHhhhccCCCCCCCcccccccccCCCcccccHHHHHHHhhcCCcc--cchhhh-HHHH----
Q 023562 37 TLHLLHVGRRK--EKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGE--QQEKKT-QWYR---- 107 (280)
Q Consensus 37 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~w~~~l~~~~~--~~~~~~-~~y~---- 107 (280)
..-++.+|+.| ..++.+.+.+...- +....+.+.|.+..| ++++...-+..+..... +..... .+|.
T Consensus 103 d~v~~~~Pk~k~~~~~~~~l~~~~~~l--~~g~~i~~~g~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 178 (381)
T 3dmg_A 103 DLVVLALPAGRGTAYVQASLVAAARAL--RMGGRLYLAGDKNKG--FERYFKEARALLGYGVVVRREGPYRVALLEKEKE 178 (381)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHHHHHE--EEEEEEEEEEEGGGT--HHHHHHHHHHHHSCEEEEEEETTEEEEEEECCSC
T ss_pred CEEEEECCcchhHHHHHHHHHHHHHhC--CCCCEEEEEEccHHH--HHHHHHHHHhhhccccccccccCcEEEEEEccCC
Confidence 34577799766 45666666444311 124555678888887 45555555543332100 001110 1110
Q ss_pred --HHHhhhhcccccccc---cccCccccccc-cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC
Q 023562 108 --EGISYWEGVEASVDG---VLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (280)
Q Consensus 108 --~~~~yW~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~ 181 (280)
.....|........+ .+.....++.. .+......+...+...+.. ...++.+|||+|||+|.++..+++.+.
T Consensus 179 ~p~~~~~w~~~~~~~~g~~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~-~~~~~~~VLDlGcG~G~~~~~la~~g~- 256 (381)
T 3dmg_A 179 APPLPSLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGP-EGVRGRQVLDLGAGYGALTLPLARMGA- 256 (381)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEECTTCTTTTSCCHHHHHHHHHHHHHHCT-TTTTTCEEEEETCTTSTTHHHHHHTTC-
T ss_pred CCCCccccceeeEEecCceEEEEeCCCceeCCCCCHHHHHHHHHHHHhhcc-cCCCCCEEEEEeeeCCHHHHHHHHcCC-
Confidence 112344432221111 01011112211 1233334444444432210 023567999999999999999998865
Q ss_pred cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhc---CChhhHHHHHHHHHHc
Q 023562 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH---LTDDDFVSFFKRAKVG 258 (280)
Q Consensus 182 ~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~---~~~~d~~~~l~~~~r~ 258 (280)
+|+++|+|+.|++.|++++...+ ..++++++|+.+...++++||+|+++..+++ ...++...+++++.++
T Consensus 257 ~V~gvDis~~al~~A~~n~~~~~-------~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~ 329 (381)
T 3dmg_A 257 EVVGVEDDLASVLSLQKGLEANA-------LKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAAR 329 (381)
T ss_dssp EEEEEESBHHHHHHHHHHHHHTT-------CCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcC-------CCeEEEEcchhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHh
Confidence 79999999999999999987653 3489999999988765679999999988887 3345778999999999
Q ss_pred CCCCcEEEEEecc
Q 023562 259 LKPGGFFVLKENI 271 (280)
Q Consensus 259 LkpGG~lii~e~~ 271 (280)
|||||.++++.|-
T Consensus 330 LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 330 LRPGGVFFLVSNP 342 (381)
T ss_dssp EEEEEEEEEEECT
T ss_pred cCcCcEEEEEEcC
Confidence 9999999998653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=147.48 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=92.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++............+++|+++|+.+++..+++||+|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 567999999999999999987763 479999999999999998654210000001247999999999998877899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++..+++|++++....+++++.++|||| .++++.
T Consensus 801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 801 TCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 9999999999887788999999999999 777664
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=138.24 Aligned_cols=115 Identities=15% Similarity=0.030 Sum_probs=91.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcC-------cCCCCCCCCCcceeEEEccCCCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLA-------PENHMAPDMHKATNFFCVPLQDFTP 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~-------~~~~~~~~~~~~i~~~~~d~~~~~~ 226 (280)
..++.+|||||||+|.++..++..... .|+|||+|+.|++.|+++.. ..++ ...+++|+++|+.++++
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl----~~~rVefi~GD~~~lp~ 246 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK----KHAEYTLERGDFLSEEW 246 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB----CCCEEEEEECCTTSHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC----CCCCeEEEECcccCCcc
Confidence 567789999999999999988876444 59999999999999987542 1111 01479999999998764
Q ss_pred CC--CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCCC
Q 023562 227 ET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGS 276 (280)
Q Consensus 227 ~~--~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (280)
.+ ..||+|+++..+ + ++++...|+++.+.|||||.|++.|.+...++
T Consensus 247 ~d~~~~aDVVf~Nn~~-F--~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 247 RERIANTSVIFVNNFA-F--GPEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp HHHHHTCSEEEECCTT-C--CHHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred ccccCCccEEEEcccc-c--CchHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 32 379999998765 2 24778889999999999999999999876554
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=122.33 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=89.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCc-ceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..+++. ..+++++|+|+.+++.+++++...++ .. ++++..+|+.+... +++||+
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~d~~~~~~-~~~~D~ 122 (194)
T 1dus_A 50 VDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNL-----DNYDIRVVHSDLYENVK-DRKYNK 122 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC-----TTSCEEEEECSTTTTCT-TSCEEE
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECchhcccc-cCCceE
Confidence 346679999999999999998877 45799999999999999999876433 11 38999999887543 478999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+++..+++. .++...+++++.++|+|||.+++..+.
T Consensus 123 v~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 123 IITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp EEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EEECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 9998887652 346789999999999999999998654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=127.74 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=85.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC--CCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~fDlV 234 (280)
++.+|||+|||+|.++..+++.+ .+++++|+|+.+++.++++. .++..+|+.+ .+.++++||+|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~-------------~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-------------DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS-------------SEEEESCTTTCCCCSCTTCEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-------------CcEEEcchhhcCCCCCCCccCEE
Confidence 56799999999999999998774 57999999999999998764 2578888876 34455799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++..+++|++ +...+++++.++|+|||++++..+.
T Consensus 98 ~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 98 IFGDVLEHLF--DPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp EEESCGGGSS--CHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred EECChhhhcC--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999999998 5569999999999999999998643
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=132.23 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=88.7
Q ss_pred CCccEEEeecCccH----HHHHHHHhcC-----CcEEEEeCCHHHHHHHHHHcCcC----CCC---------------C-
Q 023562 157 QHLVALDCGSGIGR----ITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPE----NHM---------------A- 207 (280)
Q Consensus 157 ~~~~VLDlGcG~G~----~s~~l~~~~~-----~~v~~vD~S~~~l~~A~~~~~~~----~~~---------------~- 207 (280)
++.+|+|+|||+|. +++.+++... .+|+|+|+|+.||+.|+++.... ++. .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5665665422 27999999999999999875210 000 0
Q ss_pred -----CCCCcceeEEEccCCCCCCC-CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--eccC
Q 023562 208 -----PDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (280)
Q Consensus 208 -----~~~~~~i~~~~~d~~~~~~~-~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (280)
.....++.|.+.|+.+.+++ .++||+|+|.++++|++++....+++++.+.|+|||++++- |.+.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE~~~ 257 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENFS 257 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCCCT
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEeccccc
Confidence 00013689999999885433 47899999999999999888899999999999999999984 6653
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=125.35 Aligned_cols=103 Identities=11% Similarity=0.085 Sum_probs=84.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++. ..+|+++|+|+.|++.|++++...++ ..+++++++|+.+......+||+|
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~~~~~~~~~D~v 126 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGL-----SPRMRAVQGTAPAALADLPLPEAV 126 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCTTGGGTTSCCCSEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC-----CCCEEEEeCchhhhcccCCCCCEE
Confidence 456789999999999999999988 44799999999999999999876543 337999999998843333589999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++...+ +.. +++++.++|||||++++...
T Consensus 127 ~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 127 FIGGGG------SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp EECSCC------CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred EECCcc------cHH-HHHHHHHhcCCCcEEEEEec
Confidence 987643 344 99999999999999998753
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-15 Score=126.04 Aligned_cols=102 Identities=19% Similarity=0.085 Sum_probs=86.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.|++++...++ .++++..+|+.+.....++||+|
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~D~i 147 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDL------HNVSTRHGDGWQGWQARAPFDAI 147 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCC------CceEEEECCcccCCccCCCccEE
Confidence 4567899999999999999998884 4799999999999999999876543 36899999998765556799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++..+++|+++ .+.+.|||||++++.-+.
T Consensus 148 ~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 148 IVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred EEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999883 478999999999997543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-16 Score=131.71 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=77.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC-CCCCCC-CCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPE-TGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~-~~~fDlV 234 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++. .+++++++|+ ..++.+ +++||+|
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~~~fD~v 115 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA-----------PHADVYEWNGKGELPAGLGAPFGLI 115 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC-----------TTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC-----------CCceEEEcchhhccCCcCCCCEEEE
Confidence 567999999999999999988755 6999999999999999983 3589999999 456665 6899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
+++. +...+++++.++|||||.++
T Consensus 116 ~~~~--------~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 116 VSRR--------GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp EEES--------CCSGGGGGHHHHEEEEEEEE
T ss_pred EeCC--------CHHHHHHHHHHHcCCCcEEE
Confidence 9871 34479999999999999998
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=135.25 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=93.5
Q ss_pred ccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
.+|||+|||+|..+..+++..+. +++++|+ +.+++.|++++...++ ..++++..+|+.+ +.+ ++||+|++.
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~~-~~~D~v~~~ 240 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA-----GERVSLVGGDMLQ-EVP-SNGDIYLLS 240 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH-----TTSEEEEESCTTT-CCC-SSCSEEEEE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC-----CCcEEEecCCCCC-CCC-CCCCEEEEc
Confidence 79999999999999999988644 7999999 9999999998764322 3469999999977 443 689999999
Q ss_pred chhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
.++||+++++...+++++.++|+|||++++.|.+...
T Consensus 241 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 277 (334)
T 2ip2_A 241 RIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA 277 (334)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred hhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 9999999888889999999999999999999987643
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=136.61 Aligned_cols=106 Identities=16% Similarity=0.131 Sum_probs=91.4
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+++.+..+|+++|+|+ |++.|++++...++ ..+++++.+|+.+++.+ ++||+|+
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l-----~~~v~~~~~d~~~~~~~-~~~D~Iv 121 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKVEEVSLP-EQVDIII 121 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTCCCS-SCEEEEE
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCC-----CCcEEEEEcchhhCCCC-CceeEEE
Confidence 46679999999999999999887666899999996 99999998876544 45799999999988765 6899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+..+++|+..++....+..+.++|||||.+++.
T Consensus 122 s~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 122 SEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp ECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999888887777788888999999999999854
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.9e-15 Score=124.75 Aligned_cols=101 Identities=13% Similarity=0.012 Sum_probs=78.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~ 229 (280)
..++.+|||+|||+|..+..+++... .+|+++|+|+.|++.+.+.... ..++.++.+|+.+. +.. +
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~~-~ 125 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASKPWKYSGIV-E 125 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTCGGGTTTTC-C
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc--------CCCeEEEEcCCCCchhhcccc-c
Confidence 45678999999999999998887753 3799999999988766555433 23578888888763 333 7
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||+|+++.. . +++...+++++.++|||||.|+++
T Consensus 126 ~fD~V~~~~~-~---~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 126 KVDLIYQDIA-Q---KNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp CEEEEEECCC-S---TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeEEEEecc-C---hhHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999998731 1 234456799999999999999997
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-15 Score=134.82 Aligned_cols=109 Identities=22% Similarity=0.281 Sum_probs=93.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..+++.+.. .++++|+ +.+++.|++++...++ ..++++..+|+.+ +.+ ..||+
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~~-~~~D~ 252 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL-----SDRVDVVEGDFFE-PLP-RKADA 252 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC-----TTTEEEEECCTTS-CCS-SCEEE
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC-----CCceEEEeCCCCC-CCC-CCccE
Confidence 345679999999999999999988754 7899999 9999999998866433 3479999999876 222 35999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|++..++||+++++...+++++.++|+|||++++.|.+
T Consensus 253 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 253 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 99999999999877789999999999999999999987
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.9e-16 Score=130.40 Aligned_cols=108 Identities=17% Similarity=0.140 Sum_probs=86.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C--CCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T--PETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~fD 232 (280)
.+.+|||+|||+|.++..+++..+. .|+|+|+|+.|++.|++++...++ .++.++++|+.++ + +++++||
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l------~nv~~~~~Da~~~l~~~~~~~~~d 107 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL------SNLRVMCHDAVEVLHKMIPDNSLR 107 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC------SSEEEECSCHHHHHHHHSCTTCEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHcCCCChh
Confidence 4568999999999999999988654 799999999999999999876543 4699999998774 2 4568999
Q ss_pred EEEccchhhcCChhhH------HHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDF------VSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~------~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.|++++...+...... ..+++.+.++|||||+|++..+
T Consensus 108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 9998855433322121 2599999999999999999754
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=136.98 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=89.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+++.+..+|+++|+|+ |++.|++++...++ ..+++++++|+.+++.++++||+|+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~Ii 138 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKL-----DHVVTIIKGKVEEVELPVEKVDIII 138 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCC-----CCcEEEEECcHHHccCCCCceEEEE
Confidence 35679999999999999999988766899999994 99999999877654 4569999999999987778999999
Q ss_pred ccchhhcC-ChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~-~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+.++.+++ ...++..+++.+.++|||||++++.
T Consensus 139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred EccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 97653333 2237789999999999999998743
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=133.07 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=84.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..++.+ ...+|+++|+|+.|++.|+++++..++ .+++|.++|+.+++ +++||+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl------~~v~~v~gDa~~l~--d~~FDv 191 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV------DGVNVITGDETVID--GLEFDV 191 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC------CSEEEEESCGGGGG--GCCCSE
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC------CCeEEEECchhhCC--CCCcCE
Confidence 667899999999999776545444 334799999999999999999876432 47999999998875 579999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|++... .+ +...+++++.++|||||.+++.+.
T Consensus 192 V~~~a~---~~--d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 192 LMVAAL---AE--PKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEECTT---CS--CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEECCC---cc--CHHHHHHHHHHHcCCCcEEEEEcC
Confidence 998654 33 777999999999999999999763
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-15 Score=125.64 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=86.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDl 233 (280)
++.+|||+|||+|.++..+++..+. +++++|+|+.+++.|++++...++ .++.++++|+.+++ +++++||+
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~D~ 114 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDLTDYFEDGEIDR 114 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCGGGTSCTTCCSE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC------CCEEEEeCCHHHHHhhcCCCCCCE
Confidence 4568999999999999999988654 899999999999999998876432 47999999998865 55678999
Q ss_pred EEccchhhcCChh------hHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|++++...+.... ....+++.+.++|+|||.+++..
T Consensus 115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 9998654322211 23579999999999999999864
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=126.48 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=86.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+..+|+++|+|+.|++.|++++...++ .++++.++|+.+.. +++||+|++
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~--~~~fD~i~~ 131 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGI------YDIALQKTSLLADV--DGKFDLIVA 131 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CCCEEEESSTTTTC--CSCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEeccccccC--CCCceEEEE
Confidence 5679999999999999998876555899999999999999999876543 23899999997754 479999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+..+++ +..+++++.++|+|||++++.+..
T Consensus 132 ~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~ 161 (205)
T 3grz_A 132 NILAEI-----LLDLIPQLDSHLNEDGQVIFSGID 161 (205)
T ss_dssp ESCHHH-----HHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred CCcHHH-----HHHHHHHHHHhcCCCCEEEEEecC
Confidence 987764 468999999999999999997543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-15 Score=127.69 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=87.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCc---CCCCCCCCCcceeEEEccCCCC------
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP---ENHMAPDMHKATNFFCVPLQDF------ 224 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~---~~~~~~~~~~~i~~~~~d~~~~------ 224 (280)
..++.+|||+|||+|.++..++++... +|+++|+++.+++.|++++.. .++ ..+++++++|+.++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l-----~~~v~~~~~D~~~~~~~~~~ 108 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF-----SARIEVLEADVTLRAKARVE 108 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT-----GGGEEEEECCTTCCHHHHHH
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC-----cceEEEEeCCHHHHhhhhhh
Confidence 345679999999999999999988643 899999999999999999877 544 34699999999887
Q ss_pred -CCCCCcEEEEEccchhh----------------cCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 225 -TPETGRYDVIWVQWCIG----------------HLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 225 -~~~~~~fDlV~~~~~l~----------------~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+.+++||+|+++-.+. |.....+..+++.+.++|||||++++.
T Consensus 109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 23457999999983322 222234778999999999999999885
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-15 Score=125.79 Aligned_cols=106 Identities=21% Similarity=0.166 Sum_probs=84.5
Q ss_pred CCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEE
Q 023562 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDl 233 (280)
.++.+|||+||| +|.++..+++....+|+++|+|+.|++.|++++...+ .+++++++|+..+. ..+++||+
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~v~~~~~d~~~~~~~~~~~fD~ 126 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNN-------SNVRLVKSNGGIIKGVVEGTFDV 126 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTT-------CCCEEEECSSCSSTTTCCSCEEE
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhC-------CCcEEEeCCchhhhhcccCceeE
Confidence 467899999999 9999999988754479999999999999999987652 26899999975442 33479999
Q ss_pred EEccchhhcCCh-----------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTD-----------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~-----------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+++..+++..+ ..+..+++.+.++|||||++++.
T Consensus 127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 999866554332 12478999999999999999985
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-15 Score=126.90 Aligned_cols=107 Identities=12% Similarity=0.236 Sum_probs=84.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDl 233 (280)
++.+|||+|||+|.++..+++.... +|+|+|+|+.|++.|++++...++ .++.++++|+.+++ +++++||.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~------~nv~~~~~d~~~l~~~~~~~~~d~ 111 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEPGEVKR 111 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCTTSCCE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC------CCEEEEeCCHHHHHhhcCcCCcCE
Confidence 4568999999999999999987543 799999999999999998876433 46999999998764 45678999
Q ss_pred EEccchhhcCChh------hHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|++++...+.... ....+++++.++|+|||.|++..
T Consensus 112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 9876543322110 13579999999999999999864
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.4e-16 Score=126.68 Aligned_cols=104 Identities=11% Similarity=0.017 Sum_probs=83.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..++...+. +|+++|+|+.|++.+++++...|. ..++.+ .|+.... ++++||+|
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~-----~~~v~~--~d~~~~~-~~~~~DvV 119 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT-----TIKYRF--LNKESDV-YKGTYDVV 119 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC-----SSEEEE--ECCHHHH-TTSEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CccEEE--ecccccC-CCCCcChh
Confidence 35779999999999999988766333 899999999999999999987644 224455 5554433 34799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++..++|++. +.+..+.++.+.|+|||+|+--+
T Consensus 120 La~k~LHlL~--~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 120 FLLKMLPVLK--QQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp EEETCHHHHH--HTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hHhhHHHhhh--hhHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999993 55677779999999999998877
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=130.71 Aligned_cols=110 Identities=19% Similarity=0.061 Sum_probs=88.6
Q ss_pred CC-CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcE
Q 023562 155 NN-QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (280)
Q Consensus 155 ~~-~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~f 231 (280)
.. ++.+|||+|||+|.++..+++++..+|+++|+++.+++.|++++...++ ..+++++++|+.++. .++++|
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~-----~~~v~~~~~D~~~~~~~~~~~~f 120 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQL-----EDQIEIIEYDLKKITDLIPKERA 120 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTC-----TTTEEEECSCGGGGGGTSCTTCE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC-----cccEEEEECcHHHhhhhhccCCc
Confidence 44 5789999999999999999887665899999999999999999887654 456999999998875 335799
Q ss_pred EEEEccchhhcC------------------ChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQWCIGHL------------------TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~~l~~~------------------~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|+++-.+... ...++..+++.+.++|||||++++.-
T Consensus 121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp EEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 999997443222 11346789999999999999999863
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=123.62 Aligned_cols=116 Identities=9% Similarity=0.007 Sum_probs=91.0
Q ss_pred HHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhc-CC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 142 l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~-~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
|...+...+.....+++.+|||+|||+|.++..+++.. .. .|+++|+|+.|++.+++++.. ..|+..+..
T Consensus 62 laa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~--------~~ni~~V~~ 133 (233)
T 4df3_A 62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD--------RRNIFPILG 133 (233)
T ss_dssp HHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT--------CTTEEEEES
T ss_pred HHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh--------hcCeeEEEE
Confidence 33444444555557899999999999999999999873 33 799999999999999999876 357888888
Q ss_pred cCCCC---CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 220 PLQDF---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 220 d~~~~---~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|..+. +...+++|+|++... |.. +...++.++.+.|||||.++++.
T Consensus 134 d~~~p~~~~~~~~~vDvVf~d~~--~~~--~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 134 DARFPEKYRHLVEGVDGLYADVA--QPE--QAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CTTCGGGGTTTCCCEEEEEECCC--CTT--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eccCccccccccceEEEEEEecc--CCh--hHHHHHHHHHHhccCCCEEEEEE
Confidence 87653 344578999986533 323 66789999999999999999874
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-15 Score=134.89 Aligned_cols=216 Identities=17% Similarity=0.151 Sum_probs=132.4
Q ss_pred CcceeeeehhhHHHHHHHHhhhccCCCCCCCcccccccccCCCcccccHHHHHHHhhcCCcccchhhhHHHHHHHhhhhc
Q 023562 36 PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEG 115 (280)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~w~~~l~~~~~~~~~~~~~y~~~~~yW~~ 115 (280)
...-++.+|+.+..++...+.....-. ....+.+.|.+..+ ..++.++..+..+..... ... .+...+|..
T Consensus 101 ~~~v~~~lpk~~~~l~~~L~~l~~~l~--~~~~i~~~g~~~~~--~~~~~~~l~~~~~~~~~~-~a~----~~~~~~~~~ 171 (375)
T 4dcm_A 101 PGVVLIKVPKTLALLEQQLRALRKVVT--SDTRIIAGAKARDI--HTSTLELFEKVLGPTTTT-LAW----KKARLINCT 171 (375)
T ss_dssp CSEEEEECCSCHHHHHHHHHHHHTTCC--TTSEEEEEEEGGGC--CHHHHHHHHHHTCCEEEC-CCB----TTEEEEEEC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHhhCC--CCCEEEEEecccch--HHHHHHHHHhhcCccchh-hhh----ceeEEEEEe
Confidence 334588899999999888777665321 23445566666555 456677776664431000 000 001122321
Q ss_pred ccc-c-ccc------cccC-------cccccc-ccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhc
Q 023562 116 VEA-S-VDG------VLGG-------FGNVNE-VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY 179 (280)
Q Consensus 116 ~~~-~-~~~------~~~~-------~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~ 179 (280)
... . ... ...+ ...++. ..+.....++... +. ..++.+|||+|||+|.++..+++.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~Fs~~~~d~~~~~ll~~----l~---~~~~~~VLDlGcG~G~~s~~la~~~ 244 (375)
T 4dcm_A 172 FNEPQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQH----LP---ENLEGEIVDLGCGNGVIGLTLLDKN 244 (375)
T ss_dssp CCCCCCCCCCSCEEEEETTTTEEEEECTTCTTCSSCCHHHHHHHHT----CC---CSCCSEEEEETCTTCHHHHHHHHHC
T ss_pred CCCCCCCCCCCceEEEecCCceEEEeCCCcccCCcccHHHHHHHHh----Cc---ccCCCeEEEEeCcchHHHHHHHHHC
Confidence 100 0 000 0000 011111 1222223333332 22 3345799999999999999999886
Q ss_pred C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhc---CChhhHHHHHHHH
Q 023562 180 F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH---LTDDDFVSFFKRA 255 (280)
Q Consensus 180 ~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~---~~~~d~~~~l~~~ 255 (280)
+ .+|+++|+|+.|++.|++++..+++. ...+++|..+|+.+. .++++||+|+++..+++ +.+.....+++++
T Consensus 245 p~~~V~gvD~s~~al~~Ar~n~~~ngl~---~~~~v~~~~~D~~~~-~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~ 320 (375)
T 4dcm_A 245 PQAKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHA 320 (375)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHHCGG---GGGGEEEEECSTTTT-CCTTCEEEEEECCCC-------CCHHHHHHHHH
T ss_pred CCCEEEEEECcHHHHHHHHHHHHHcCCC---cCceEEEEechhhcc-CCCCCeeEEEECCCcccCcccCHHHHHHHHHHH
Confidence 3 38999999999999999998775431 113588899998874 34479999999988875 3333456799999
Q ss_pred HHcCCCCcEEEEEecc
Q 023562 256 KVGLKPGGFFVLKENI 271 (280)
Q Consensus 256 ~r~LkpGG~lii~e~~ 271 (280)
.++|||||.++++.|-
T Consensus 321 ~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 321 RRCLKINGELYIVANR 336 (375)
T ss_dssp HHHEEEEEEEEEEEET
T ss_pred HHhCCCCcEEEEEEEC
Confidence 9999999999997553
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-16 Score=144.52 Aligned_cols=105 Identities=19% Similarity=0.217 Sum_probs=83.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++++. +|+++|+|+.|++.|+++... .....|...+...++.++++||+|
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~~~~~~l~~~~~~fD~I 175 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIR--------VRTDFFEKATADDVRRTEGPANVI 175 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCC--------EECSCCSHHHHHHHHHHHCCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCC--------cceeeechhhHhhcccCCCCEEEE
Confidence 45678999999999999999998876 699999999999999887211 011112233444444445799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++..+++|++ ++..+++++.++|||||++++...
T Consensus 176 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 176 YAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp EEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999999998 778999999999999999999754
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-15 Score=126.58 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=83.2
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
+.+|||+|||+|.++..++.. +++|+|+.|++.++++ ++++.++|+.+++.++++||+|++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------------~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDFALMV 109 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------------CCEEEEcccccCCCCCCCeeEEEEc
Confidence 579999999999999977643 9999999999999876 2678899998887766899999999
Q ss_pred chhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.+++|++ +...+++++.++|+|||.+++.+..
T Consensus 110 ~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 110 TTICFVD--DPERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp SCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chHhhcc--CHHHHHHHHHHHcCCCcEEEEEEeC
Confidence 9999997 6679999999999999999998654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-15 Score=129.42 Aligned_cols=102 Identities=17% Similarity=0.192 Sum_probs=84.4
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC---CCcE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~f 231 (280)
.++.+|||+|||+|..+..++.... .+|+++|+|+.|++.|++++...++ .+++++++|+.+++.. +++|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~f 142 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAETFGQRKDVRESY 142 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHHHTTCTTTTTCE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEeccHHHhcccccccCCc
Confidence 3567999999999999998886433 3799999999999999998876543 3599999998877642 4789
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|++..+ . ++..+++.+.++|+|||++++..
T Consensus 143 D~V~~~~~----~--~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 143 DIVTARAV----A--RLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp EEEEEECC----S--CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cEEEEecc----C--CHHHHHHHHHHhcCCCCEEEEEe
Confidence 99998763 2 57799999999999999999874
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.2e-15 Score=132.12 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=87.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..++++++. +++++|+ +.++. +++....+. ..+++|..+|+.+ +.+ +||+
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~-----~~~v~~~~~d~~~-~~p--~~D~ 250 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDV-----AGRWKVVEGDFLR-EVP--HADV 250 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGG-----TTSEEEEECCTTT-CCC--CCSE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCC-----CCCeEEEecCCCC-CCC--CCcE
Confidence 446789999999999999999988766 7899999 45554 333332222 4579999999963 222 8999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
|++.+++||+++++...++++++++|||||++++.|.+...
T Consensus 251 v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 291 (348)
T 3lst_A 251 HVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE 291 (348)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred EEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 99999999999887789999999999999999999987644
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=123.47 Aligned_cols=100 Identities=20% Similarity=0.134 Sum_probs=84.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++++.... + ++++..+|+.+....+++||+|
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~-------~-~v~~~~~d~~~~~~~~~~fD~v 138 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY-------N-NIKLILGDGTLGYEEEKPYDRV 138 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC-------S-SEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhc-------C-CeEEEECCcccccccCCCccEE
Confidence 4567799999999999999998887 57999999999999999998763 2 6899999987733334789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++..+++|+.+ ++.++|+|||++++..+.
T Consensus 139 ~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 139 VVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred EECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 99999999872 588999999999998654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-15 Score=122.14 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=85.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..+++.+..+|+++|+|+.|++.|++++...++ ..+++++++|+.++ +..+++||+|+
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~fD~i~ 105 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEAERAIDCLTGRFDLVF 105 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECcHHHhHHhhcCCCCEEE
Confidence 5679999999999999999888656899999999999999999876543 34689999998773 32236799999
Q ss_pred ccchhhcCChhhHHHHHHHHH--HcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~--r~LkpGG~lii~e~~ 271 (280)
++..++. .....+++.+. ++|+|||++++..+.
T Consensus 106 ~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 106 LDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp ECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred ECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 9866532 24557777777 999999999997554
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-15 Score=124.95 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=85.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++.++..+|+++|+|+.|++.|++++...++ .+++++++|+.++ +..+++||+|+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~D~~~~~~~~~~~fD~V~ 127 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNAMSFLAQKGTPHNIVF 127 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHhhcCCCCCEEE
Confidence 4569999999999999988888776899999999999999999876532 4689999998763 43457899999
Q ss_pred ccchhhcCChhhHHHHHHHHHH--cCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii~e~~ 271 (280)
+...++ .. ....+++.+.+ +|+|||++++..+.
T Consensus 128 ~~~p~~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 128 VDPPFR-RG--LLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp ECCSSS-TT--THHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred ECCCCC-CC--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 987644 22 55678888866 59999999987544
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-15 Score=125.79 Aligned_cols=89 Identities=24% Similarity=0.299 Sum_probs=75.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+. .+|+++|+|+. ++++.++|+.+++.++++||+|+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------------~~~~~~~d~~~~~~~~~~fD~v~ 120 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------------DPRVTVCDMAQVPLEDESVDVAV 120 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------------STTEEESCTTSCSCCTTCEEEEE
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------------CceEEEeccccCCCCCCCEeEEE
Confidence 356799999999999988662 46999999876 25678899988877778999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+..++|+ . +...+++++.++|+|||.+++.+...
T Consensus 121 ~~~~l~~-~--~~~~~l~~~~~~L~~gG~l~i~~~~~ 154 (215)
T 2zfu_A 121 FCLSLMG-T--NIRDFLEEANRVLKPGGLLKVAEVSS 154 (215)
T ss_dssp EESCCCS-S--CHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred Eehhccc-c--CHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 9999964 4 67899999999999999999987653
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-17 Score=139.69 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=82.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+ .+|+++|+|+.|++.|++++...++ ..+++++++|+.+++ .+++||+|++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~-~~~~~D~v~~ 150 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGI-----ADKIEFICGDFLLLA-SFLKADVVFL 150 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHG-GGCCCSEEEE
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCC-----CcCeEEEECChHHhc-ccCCCCEEEE
Confidence 56799999999999999999886 5799999999999999999876543 357999999998876 3479999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+..+++.... ...+.++.++|+|||++++
T Consensus 151 ~~~~~~~~~~--~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 151 SPPWGGPDYA--TAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp CCCCSSGGGG--GSSSBCTTTSCSSCHHHHH
T ss_pred CCCcCCcchh--hhHHHHHHhhcCCcceeHH
Confidence 9888886632 3456667777777777544
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-15 Score=121.70 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=84.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC----CCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD 232 (280)
++.+|||+|||+|.++..+++.+..+|+++|+|+.|++.|++++...++ ..+++++++|+.++.. .+++||
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~fD 118 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMDANRALEQFYEEKLQFD 118 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-----CcceEEEECcHHHHHHHHHhcCCCCC
Confidence 5679999999999999988887656899999999999999999876533 3468999999876421 147899
Q ss_pred EEEccchhhcCChhhHHHHHHHH--HHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRA--KVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~--~r~LkpGG~lii~e~~ 271 (280)
+|+++..++.. ....+++.+ .++|+|||++++..+.
T Consensus 119 ~i~~~~~~~~~---~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 119 LVLLDPPYAKQ---EIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp EEEECCCGGGC---CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred EEEECCCCCch---hHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 99998775432 344667777 8899999999987443
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-15 Score=129.57 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=87.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+..+|+++|+|+.|++.|++++..+++ ..+++++++|+.++.. +++||+|++
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~-----~~~v~~~~~D~~~~~~-~~~fD~Vi~ 198 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFPG-ENIADRILM 198 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCCC-CSCEEEEEE
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECCHHHhcc-cCCccEEEE
Confidence 5679999999999999999988776799999999999999999887654 3458999999999876 579999998
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.... ....++..+.++|+|||++++.++.
T Consensus 199 ~~p~------~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 199 GYVV------RTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp CCCS------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred CCch------hHHHHHHHHHHHCCCCeEEEEEEee
Confidence 6442 2347899999999999999998765
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=130.99 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=87.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+..+|+++|+| .|++.|++++...++ ..+++++.+|+.+++.++++||+|++
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~Ivs 111 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGF-----SDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTC-----TTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCC-----CCCEEEEECchhhccCCCCcccEEEE
Confidence 457999999999999999888776689999999 699999999876554 45799999999998766679999999
Q ss_pred cchhhcC-ChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 237 QWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 237 ~~~l~~~-~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
....+++ ....+..++.++.++|||||+++.
T Consensus 112 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 8554333 223677899999999999999974
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=121.15 Aligned_cols=100 Identities=16% Similarity=0.098 Sum_probs=83.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC----CCCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----FTPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~----~~~~~~ 229 (280)
..++.+|||+|||+|.++..+++... .+|+++|+|+.|++.+++++.. ..++.++.+|+.+ .++. +
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~v~~~~~d~~~~~~~~~~~-~ 142 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--------RENIIPILGDANKPQEYANIV-E 142 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--------CTTEEEEECCTTCGGGGTTTS-C
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc--------CCCeEEEECCCCCcccccccC-c
Confidence 45678999999999999999998743 4799999999999999998765 2578999999988 6655 7
Q ss_pred cEEEEEccchhhcCChh-hHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~-d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||+|+ ++++++ ....+++++.+.|||||++++.
T Consensus 143 ~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 143 KVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp CEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 899998 334432 3367899999999999999996
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.3e-15 Score=138.26 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=90.1
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+++.+..+|+++|+|+ |++.|++++...++ ..+++++.+|+.+++.+ ++||+|+
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl-----~~~v~~~~~d~~~~~~~-~~fD~Iv 229 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKVEEVSLP-EQVDIII 229 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTC-----TTTEEEEESCTTTCCCS-SCEEEEE
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCC-----CCcEEEEECchhhCccC-CCeEEEE
Confidence 35679999999999999988876655899999998 99999998877654 46799999999987655 6899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
++..++|+..++....+..+.++|||||++++
T Consensus 230 s~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 230 SEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred EeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 99888887766777888899999999999985
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8e-15 Score=126.26 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=86.6
Q ss_pred CCccEEEeecCccHHHHHHHHh--cC-CcEEEEeCCHHHHHHHHHHcCcC---CCCCCCCCcc-----------------
Q 023562 157 QHLVALDCGSGIGRITKNLLIR--YF-NEVDLLEPVSHFLDAARESLAPE---NHMAPDMHKA----------------- 213 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~--~~-~~v~~vD~S~~~l~~A~~~~~~~---~~~~~~~~~~----------------- 213 (280)
++.+|||+|||+|.++..+++. .. .+|+++|+|+.|++.|++++... ++ ..+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 125 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL-----TARELERREQSERFGKPSYL 125 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH-----HHHHHHHHHHHHHHCCHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc-----cccchhhhhhhhhcccccch
Confidence 5679999999999999999876 32 37999999999999999887543 11 111
Q ss_pred --------ee-------------EEEccCCCCCC-----CCCcEEEEEccchhhcCCh-------hhHHHHHHHHHHcCC
Q 023562 214 --------TN-------------FFCVPLQDFTP-----ETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGLK 260 (280)
Q Consensus 214 --------i~-------------~~~~d~~~~~~-----~~~~fDlV~~~~~l~~~~~-------~d~~~~l~~~~r~Lk 260 (280)
++ |.++|+.+... ...+||+|+++..+++... +.+..+++++.++|+
T Consensus 126 ~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 205 (250)
T 1o9g_A 126 EAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP 205 (250)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred hhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcC
Confidence 56 99999877432 3348999999977666542 456799999999999
Q ss_pred CCcEEEEEeccC
Q 023562 261 PGGFFVLKENIA 272 (280)
Q Consensus 261 pGG~lii~e~~~ 272 (280)
|||+++++.+..
T Consensus 206 pgG~l~~~~~~~ 217 (250)
T 1o9g_A 206 AHAVIAVTDRSR 217 (250)
T ss_dssp TTCEEEEEESSS
T ss_pred CCcEEEEeCcch
Confidence 999999976543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=125.34 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=85.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC---CCcE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~f 231 (280)
.++.+|||+|||+|..+..++..... +|+++|+|+.+++.|++++...++ .+++++++|+++++.. .++|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l------~~v~~~~~d~~~~~~~~~~~~~f 152 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL------KGARALWGRAEVLAREAGHREAY 152 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEECCHHHHTTSTTTTTCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CceEEEECcHHHhhcccccCCCc
Confidence 45679999999999999998877543 899999999999999999877544 3599999999887642 3799
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|+|++..+ . ++..+++.+.++|||||++++...
T Consensus 153 D~I~s~a~----~--~~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 153 ARAVARAV----A--PLCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp EEEEEESS----C--CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred eEEEECCc----C--CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999754 2 567899999999999999988643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=124.86 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=81.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CC--CCCCcE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT--PETGRY 231 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~f 231 (280)
.++.+|||||||+|.++..+++.... .|+|+|+|+.|++.|++++............++.++++|+.+ ++ +++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 35568999999999999999877654 799999999999999877542000000002579999999987 44 556899
Q ss_pred EEEEccchhhcCChh------hHHHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|.|++++.-.+.... ....+++++.++|||||.|++.
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 999876543221100 0147999999999999999986
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-15 Score=144.92 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=89.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fDl 233 (280)
.++.+|||||||.|.++..|++.|.. |+|||+|+.+|+.|+.++...+. .+++|.+++++++ ..++++||+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga~-V~giD~~~~~i~~a~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~ 137 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGAT-IVGIDFQQENINVCRALAEENPD------FAAEFRVGRIEEVIAALEEGEFDL 137 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTSTT------SEEEEEECCHHHHHHHCCTTSCSE
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCCE-EEEECCCHHHHHHHHHHHHhcCC------CceEEEECCHHHHhhhccCCCccE
Confidence 35689999999999999999998875 99999999999999998876432 4799999999887 345579999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+|..+++|+++++....+..+.+.|+++|..++...+
T Consensus 138 v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 138 AIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELA 175 (569)
T ss_dssp EEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred EEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence 99999999998655444456677788888877766544
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.6e-15 Score=124.87 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=83.9
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--CCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fDl 233 (280)
++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.|++++...++ ..+++++.+|+.+... .+++||+
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~fD~ 145 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF-----ENQVRIIEGNALEQFENVNDKVYDM 145 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-----TTTEEEEESCGGGCHHHHTTSCEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECCHHHHHHhhccCCccE
Confidence 56799999999999999998743 23799999999999999999877544 3579999999977532 2479999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|++... ...+..+++.+.++|||||+|++.+
T Consensus 146 V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 146 IFIDAA-----KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp EEEETT-----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEEcCc-----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 997643 2356789999999999999997743
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=120.51 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=84.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.+++++...++ .++++..+|+......+++||
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD 148 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY------DNVIVIVGDGTLGYEPLAPYD 148 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCCCCCee
Confidence 45677999999999999999988763 4799999999999999998765432 358899998854333347899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++..+++|++ +++.++|||||.+++..+
T Consensus 149 ~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 149 RIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 999999999887 278899999999999854
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=128.58 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=86.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++.+.. +|+++|+|+.+++.|++++...++ .++++..+|+.+..+.+++||
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD 146 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVCGDGYYGVPEFSPYD 146 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEE
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCeEEEECChhhccccCCCeE
Confidence 456789999999999999999887652 599999999999999999876543 358999999987654457899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++..+++|+. +.+.+.|||||++++..+
T Consensus 147 ~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 147 VIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp EEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred EEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 999999999987 357889999999999854
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8e-15 Score=119.95 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=85.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.+++++...+. ..++++.++|+.+.....++||+|
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~v 104 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLMEGDAPEALCKIPDIDIA 104 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEEESCHHHHHTTSCCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEecCHHHhcccCCCCCEE
Confidence 4567799999999999999998777 6799999999999999998765432 346889999876621112589999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++..++++ +..+++.+.++|+|||.+++...
T Consensus 105 ~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 105 VVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp EESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCchHH-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 99877653 46899999999999999998754
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=131.47 Aligned_cols=103 Identities=17% Similarity=0.344 Sum_probs=88.1
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.+..+|||||||+|.++..++++++. +++++|+ +.|++.|++ ..+++|..+|+.+ +.+.+ |+|
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~p~~--D~v 265 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------------FSGVEHLGGDMFD-GVPKG--DAI 265 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTT-CCCCC--SEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh------------cCCCEEEecCCCC-CCCCC--CEE
Confidence 45679999999999999999988765 7999999 889876643 2468999999986 44433 999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
++.+++||+++++...++++++++|+|||++++.|.+...
T Consensus 266 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 305 (368)
T 3reo_A 266 FIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPP 305 (368)
T ss_dssp EEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 9999999999888889999999999999999999988643
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=123.46 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=84.4
Q ss_pred CccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCC-cceeEEEccCCCCC--CCCCcEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDFT--PETGRYD 232 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~fD 232 (280)
+.+|||+|||+|..+..+++... .+|+++|+|+.+++.|++++...++ . .+++++++|+.++. ..+++||
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~~i~~~~gda~~~l~~~~~~~fD 131 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY-----SPSRVRFLLSRPLDVMSRLANDSYQ 131 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC-----CGGGEEEECSCHHHHGGGSCTTCEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcCcEEEEEcCHHHHHHHhcCCCcC
Confidence 44999999999999999987643 3799999999999999999887654 3 57999999876652 2247999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|++.... .+...+++.+.++|||||+|++.+.+
T Consensus 132 ~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 132 LVFGQVSP-----MDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp EEEECCCT-----TTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred eEEEcCcH-----HHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 99986542 35668999999999999999885443
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=119.30 Aligned_cols=101 Identities=14% Similarity=0.083 Sum_probs=84.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++.... .+++++|+|+.+++.+++++...++ .++++.++|+.+++. .++||+|+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~-~~~~D~i~ 137 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSRVEEFPS-EPPFDGVI 137 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECCTTTSCC-CSCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEecchhhCCc-cCCcCEEE
Confidence 357999999999999999987743 3899999999999999998876433 348999999988763 37899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++.+ . ++..+++.+.++|+|||++++...
T Consensus 138 ~~~~----~--~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 138 SRAF----A--SLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp CSCS----S--SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred Eecc----C--CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 8643 2 566899999999999999998743
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=7.3e-15 Score=124.22 Aligned_cols=107 Identities=10% Similarity=0.089 Sum_probs=83.7
Q ss_pred CCccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CC-C----C
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TP-E----T 228 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~-~----~ 228 (280)
++.+|||+|||+|..+..+++.. ..+|+++|+|+.|++.|++++...++ ..+++++++|+.++ +. . .
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~ 132 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL-----QDKVTILNGASQDLIPQLKKKYDV 132 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHGGGTTTTSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC-----CCceEEEECCHHHHHHHHHHhcCC
Confidence 45799999999999999998753 23799999999999999999876544 45699999997553 21 1 2
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++||+|++....++.. +...++..+ ++|||||+|++.+..
T Consensus 133 ~~fD~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 133 DTLDMVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp CCCSEEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred CceEEEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeCCC
Confidence 6899999987666544 445677777 999999999876543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.6e-14 Score=125.80 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=94.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
.....+|+|||||+|.++..++++++. ++++.|. |.+++.|+++....+ ..+++|..+|+.+.++ ..+|+
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~------~~rv~~~~gD~~~~~~--~~~D~ 247 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE------EEQIDFQEGDFFKDPL--PEADL 247 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--------CCSEEEEESCTTTSCC--CCCSE
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc------cCceeeecCccccCCC--CCceE
Confidence 345568999999999999999999887 7788886 889999999886532 3679999999876543 35899
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
|++.+++|++++++...+|+++++.|+|||.++|.|.+..
T Consensus 248 ~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~ 287 (353)
T 4a6d_A 248 YILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLD 287 (353)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred EEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence 9999999999998889999999999999999999998864
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.4e-15 Score=122.95 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=80.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcC----cCCCCCCCCCcceeEEEccCCCCCCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLA----PENHMAPDMHKATNFFCVPLQDFTPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~----~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 229 (280)
..++.+|||+|||+|.++..+++.++. +|+++|+|+.|++.+.++.. ..+ ..++++.++|+.+++..++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~------~~~v~~~~~d~~~l~~~~~ 98 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG------LPNLLYLWATAERLPPLSG 98 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC------CTTEEEEECCSTTCCSCCC
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC------CCceEEEecchhhCCCCCC
Confidence 346679999999999999999988533 89999999999986433222 221 2479999999999887655
Q ss_pred cEEEEEcc---chhh--cCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 230 RYDVIWVQ---WCIG--HLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 230 ~fDlV~~~---~~l~--~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+ |.|++. ..++ |++ +...+++++.++|||||.+++.-
T Consensus 99 ~-d~v~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 99 V-GELHVLMPWGSLLRGVLG--SSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp E-EEEEEESCCHHHHHHHHT--SSSHHHHHHHHTEEEEEEEEEEE
T ss_pred C-CEEEEEccchhhhhhhhc--cHHHHHHHHHHHcCCCcEEEEEe
Confidence 5 666533 3332 555 33589999999999999999964
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=130.57 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=88.5
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.+..+|||||||+|.++..++++++. +++++|+ +.+++.|++ ..+++|..+|+.+ +.+.+ |+|
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~-~~p~~--D~v 263 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------------FPGVTHVGGDMFK-EVPSG--DTI 263 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTT-CCCCC--SEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------------cCCeEEEeCCcCC-CCCCC--CEE
Confidence 35679999999999999999988765 7999999 888876643 2469999999987 54433 999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
++.+++|++++++...++++++++|||||++++.|.+...
T Consensus 264 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 303 (364)
T 3p9c_A 264 LMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV 303 (364)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred EehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 9999999999888899999999999999999999988644
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-14 Score=130.40 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=86.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||||||+|.++...++.|..+|++||.|+ |++.|++++..+++ ..+++++.++++++.++ ++||+|++
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~-----~~~i~~i~~~~~~~~lp-e~~Dvivs 155 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGL-----EDRVHVLPGPVETVELP-EQVDAIVS 155 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTC-----TTTEEEEESCTTTCCCS-SCEEEEEC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCC-----CceEEEEeeeeeeecCC-ccccEEEe
Confidence 4678999999999999988888888999999996 89999999888766 57799999999998876 79999998
Q ss_pred cchhhcCC-hhhHHHHHHHHHHcCCCCcEEEE
Q 023562 237 QWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 237 ~~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii 267 (280)
.+.-..+- ...+..++....+.|||||.++-
T Consensus 156 E~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 156 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 64322222 23678899999999999999875
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-14 Score=131.37 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=87.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..++++++. .++++|+ +.|++.|++. .++++..+|+.+ +.+ . ||+|
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~-~~~-~-~D~v 271 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL------------SGIEHVGGDMFA-SVP-Q-GDAM 271 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------------TTEEEEECCTTT-CCC-C-EEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc------------CCCEEEeCCccc-CCC-C-CCEE
Confidence 35679999999999999999988765 6888899 9999866531 358999999977 444 3 9999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
++..++||+++++...++++++++|+|||++++.|.+..
T Consensus 272 ~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 310 (372)
T 1fp1_D 272 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 310 (372)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred EEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 999999999977777999999999999999999988754
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-14 Score=122.98 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=79.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCC-HHHHHHH---HHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPV-SHFLDAA---RESLAPENHMAPDMHKATNFFCVPLQDFTPE-TG 229 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S-~~~l~~A---~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 229 (280)
.++.+|||+|||+|.++..+++.... .|+|+|+| +.|++.| +++....++ .++.|.++|+.+++.. .+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------~~v~~~~~d~~~l~~~~~d 96 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL------SNVVFVIAAAESLPFELKN 96 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC------SSEEEECCBTTBCCGGGTT
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC------CCeEEEEcCHHHhhhhccC
Confidence 35679999999999999999865444 79999999 7788776 666655432 4689999999988532 25
Q ss_pred cEEEEEccchhhcCC---hhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLT---DDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~---~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+|.|++++...+.. ..+...++++++++|||||.+++.
T Consensus 97 ~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 97 IADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp CEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred eEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 678777765422110 012347899999999999999994
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-14 Score=123.03 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=84.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CC--CCCcE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TP--ETGRY 231 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~--~~~~f 231 (280)
++.+|||+|||+|..+..+++... .+|+++|+|+.+++.|++++...++ ..++++..+|+.+. +. ..++|
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~~l~~~~~~~~f 137 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV-----DQRVTLREGPALQSLESLGECPAF 137 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHTCCSCCCC
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHhcCCCCCe
Confidence 567999999999999999987743 3799999999999999999877554 45799999998663 21 23589
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+|++... ..+...+++++.++|||||+|++.+..
T Consensus 138 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 138 DLIFIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp SEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred EEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 99998653 336678999999999999988876544
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.1e-14 Score=122.71 Aligned_cols=110 Identities=9% Similarity=0.076 Sum_probs=82.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeC-CHHHHHHHHHHc-----CcCCCCCCCCCcceeEEEccCCCCC--C-
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP-VSHFLDAARESL-----APENHMAPDMHKATNFFCVPLQDFT--P- 226 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~-S~~~l~~A~~~~-----~~~~~~~~~~~~~i~~~~~d~~~~~--~- 226 (280)
.++.+|||+|||+|.++..++..+..+|+++|+ |+.|++.|++++ ...++.. ....++++...+..+.. .
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSET-VKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhccccc-CCCCCeEEEEecCCCccHHHH
Confidence 356799999999999999888776658999999 899999999998 3322200 00035777766655431 1
Q ss_pred ---CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCC---C--CcEEEEE
Q 023562 227 ---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK---P--GGFFVLK 268 (280)
Q Consensus 227 ---~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~Lk---p--GG~lii~ 268 (280)
.+++||+|++..+++|.+ +...+++.+.++|+ | ||.+++.
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 247899999999998855 77899999999999 9 9987664
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-14 Score=118.86 Aligned_cols=102 Identities=15% Similarity=-0.010 Sum_probs=81.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC---CCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~ 229 (280)
..++.+|||+|||+|.++..+++.. . .+|+++|+|+.|++.+.++... ..++++..+|+.+. +..++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--------RTNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--------CTTEEEECSCTTCGGGGGGGCC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--------cCCeEEEEcccCChhhhcccCC
Confidence 4567899999999999999999874 2 4799999999988877776654 24689999999873 33357
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||+|++... .++....++.++.++|||||+++++
T Consensus 147 ~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 147 MVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp CEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEE
Confidence 8999998654 2234456789999999999999995
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-14 Score=129.70 Aligned_cols=114 Identities=13% Similarity=-0.011 Sum_probs=87.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHH-------HHHcCcCCCCCCCCCcceeEEEccCCCC--
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAA-------RESLAPENHMAPDMHKATNFFCVPLQDF-- 224 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A-------~~~~~~~~~~~~~~~~~i~~~~~d~~~~-- 224 (280)
..++.+|||+|||+|.++..++.... ..|+|+|+|+.+++.| ++++...++. ..+++++++|....
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~----~~nV~~i~gD~~~~~~ 315 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR----LNNVEFSLKKSFVDNN 315 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC----CCCEEEEESSCSTTCH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC----CCceEEEEcCcccccc
Confidence 45678999999999999999988644 3799999999999988 7777654320 14688888753321
Q ss_pred CC--CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 225 TP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 225 ~~--~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
++ ..++||+|+++.++ +. +++..+++++.+.|||||.|++.+......
T Consensus 316 ~~~~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 316 RVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp HHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred ccccccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 11 13689999988666 32 477789999999999999999998765544
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-15 Score=118.25 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=81.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--C--CCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P--ETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~~fD 232 (280)
++.+|||+|||+|.++..+++.+.. |+++|+|+.|++.|++++...+ .+++++++|+.++. . ..++||
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~D 112 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTG-------LGARVVALPVEVFLPEAKAQGERFT 112 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHT-------CCCEEECSCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcC-------CceEEEeccHHHHHHhhhccCCceE
Confidence 4579999999999999999988776 9999999999999999887542 26889999887642 1 124899
Q ss_pred EEEccchhhcCChhhHHHHHHHHH--HcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~--r~LkpGG~lii~e~~ 271 (280)
+|+++..++ . ....+++.+. ++|+|||++++..+.
T Consensus 113 ~i~~~~~~~--~--~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 113 VAFMAPPYA--M--DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp EEEECCCTT--S--CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred EEEECCCCc--h--hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 999997765 2 2335666666 999999999987554
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-14 Score=128.83 Aligned_cols=102 Identities=13% Similarity=0.238 Sum_probs=86.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.+..+|||+|||+|.++..++++++. +++++|+ +.|++.|++. .++++..+|+.+ +.+ .||+|
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~-~~p--~~D~v 250 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------------NNLTYVGGDMFT-SIP--NADAV 250 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------------TTEEEEECCTTT-CCC--CCSEE
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------------CCcEEEeccccC-CCC--CccEE
Confidence 35579999999999999999988654 7999999 9999876541 248999999966 433 39999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCC---CcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~Lkp---GG~lii~e~~~~ 273 (280)
++.+++||+++++...++++++++||| ||++++.|.+..
T Consensus 251 ~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 292 (352)
T 1fp2_A 251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID 292 (352)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred EeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence 999999999977777999999999999 999999998754
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-14 Score=115.17 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=83.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++ ...+++++|+|+.+++.+++++...++ .++++.++|+.+ +.++++||+|
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-~~~~~~~D~i 104 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI------KNCQIIKGRAED-VLDKLEFNKA 104 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC------CSEEEEESCHHH-HGGGCCCSEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC------CcEEEEECCccc-cccCCCCcEE
Confidence 44667999999999999998887 444799999999999999999876432 468999999877 4444689999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+++.+ .+...+++.+.++ |||.+++...
T Consensus 105 ~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 105 FIGGT------KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp EECSC------SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred EECCc------ccHHHHHHHHhhC--CCCEEEEEec
Confidence 99887 2667899999998 9999999864
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=115.32 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=82.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~ 229 (280)
..++.+|||+|||+|.++..+++.. . .+|+++|+|+.|++.+++++.. ..+++++++|+.+.. ..++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~--------~~~v~~~~~d~~~~~~~~~~~~ 142 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEECCTTCGGGGTTTCC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc--------cCCCEEEEccCCCcchhhcccC
Confidence 4567799999999999999998773 2 4799999999999999998875 257899999998732 1236
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||+|++... .++....+++++.++|||||++++.
T Consensus 143 ~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 143 KVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 8999997654 2223446699999999999999997
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=115.67 Aligned_cols=96 Identities=21% Similarity=0.100 Sum_probs=79.2
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+ +|+++|+|+.|++. . .++++.++|+.+ +..+++||+|++
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~---------~~~~~~~~d~~~-~~~~~~fD~i~~ 84 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------H---------RGGNLVRADLLC-SINQESVDVVVF 84 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------C---------SSSCEEECSTTT-TBCGGGCSEEEE
T ss_pred CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------c---------cCCeEEECChhh-hcccCCCCEEEE
Confidence 45699999999999999998777 79999999999987 1 357899999987 334479999999
Q ss_pred cchhhcCChh-------hHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDD-------DFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~-------d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+..+++.++. +...+++++.+.| |||.+++.++.
T Consensus 85 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 85 NPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp CCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred CCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 9888765533 3457889999999 99999997653
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-14 Score=120.45 Aligned_cols=104 Identities=13% Similarity=0.206 Sum_probs=85.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCC--CCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPE--TGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~--~~~fD 232 (280)
++.+|||+|||+|..+..+++... .+|+++|+|+.+++.|++++...++ ..++++..+|+.+. +.. +++||
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~fD 128 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL-----ESRIELLFGDALQLGEKLELYPLFD 128 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCGGGSHHHHTTSCCEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECCHHHHHHhcccCCCcc
Confidence 557999999999999999988753 4799999999999999999876543 34689999998775 211 36899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++..... +...+++.+.++|+|||++++.+.
T Consensus 129 ~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 129 VLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred EEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcC
Confidence 999977643 567899999999999999988643
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-15 Score=124.18 Aligned_cols=105 Identities=13% Similarity=0.042 Sum_probs=64.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC-----C
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-----G 229 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~ 229 (280)
.++.+|||+|||+|.++..+++.+.. +++++|+|+.|++.|++++...+ .++++.++|+.+ +..+ +
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~-~~~~~~~~~~ 100 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG-------AVVDWAAADGIE-WLIERAERGR 100 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------------CCHHHHHH-HHHHHHHTTC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC-------CceEEEEcchHh-hhhhhhhccC
Confidence 46789999999999999999988654 89999999999999999887642 257788888766 3222 7
Q ss_pred cEEEEEccchhh------cCChhh------------------HHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIG------HLTDDD------------------FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~------~~~~~d------------------~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||+|+++..++ ++++.. +..+++++.++|||||++++.
T Consensus 101 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 163 (215)
T 4dzr_A 101 PWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL 163 (215)
T ss_dssp CBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred cccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999999974432 222211 178999999999999994444
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-14 Score=122.72 Aligned_cols=125 Identities=16% Similarity=0.173 Sum_probs=90.2
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCc--cHHHHHHHHhc-CC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcce
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGI--GRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~--G~~s~~l~~~~-~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i 214 (280)
..|+.+.+..... .....+|||||||+ +..+..++++. +. +|+++|.|+.||+.|++++...+ ..++
T Consensus 63 r~fl~rav~~l~~---~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~------~~~~ 133 (277)
T 3giw_A 63 RDWMNRAVAHLAK---EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP------EGRT 133 (277)
T ss_dssp HHHHHHHHHHHHH---TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS------SSEE
T ss_pred HHHHHHHHHHhcc---ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC------CCcE
Confidence 3566665543211 11235899999997 33444455542 22 89999999999999999987531 2469
Q ss_pred eEEEccCCCCCC----C--CCcEE-----EEEccchhhcCChhh-HHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 215 NFFCVPLQDFTP----E--TGRYD-----VIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 215 ~~~~~d~~~~~~----~--~~~fD-----lV~~~~~l~~~~~~d-~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+|+++|+.++.. + .+.|| .|+++.+|||+++.+ ...+++++.+.|+|||+|++++.+.
T Consensus 134 ~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 134 AYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp EEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred EEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 999999988520 0 13455 588999999999755 6789999999999999999997654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-14 Score=121.20 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=84.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CC----C
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE----T 228 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~----~ 228 (280)
++.+|||+|||+|..+..+++... .+|+++|+|+.+++.|++++...++ ..+++++++|+.+.. .. .
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~ 138 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL-----SDKIGLRLSPAKDTLAELIHAGQA 138 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHTTTCT
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeCCHHHHHHHhhhccCC
Confidence 457999999999999999987643 3799999999999999999876544 356999999885542 11 1
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++||+|++... ..+...+++.+.++|||||+|++.+..
T Consensus 139 ~~fD~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 139 WQYDLIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp TCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred CCccEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 68999996543 236778999999999999999987655
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=9e-15 Score=125.78 Aligned_cols=105 Identities=11% Similarity=0.168 Sum_probs=85.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC------C
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------T 228 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------~ 228 (280)
++.+|||+|||+|..+..+++... .+|+++|+|+.+++.|++++...++ ..+++++.+|+.++... .
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~~~~~~~~ 134 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ-----EHKIKLRLGPALDTLHSLLNEGGE 134 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHHHCS
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHhhccCC
Confidence 457999999999999999987643 3799999999999999999877554 45799999998664221 3
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++||+|++... ..+...+++++.++|||||+|++.+.+
T Consensus 135 ~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 135 HQFDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp SCEEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred CCEeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 78999998654 336778999999999999999886544
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.48 E-value=9.8e-14 Score=119.28 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=82.1
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCC--CCcceeEEEccCCC-CC--CCCC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPD--MHKATNFFCVPLQD-FT--PETG 229 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~--~~~~i~~~~~d~~~-~~--~~~~ 229 (280)
.++.+|||+|||+|.++..++..+.. +|+++|+|+.|++.|++++......... ...++.++++|+.+ ++ ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 35679999999999999999988765 7999999999999999876542000000 01478999999987 44 4567
Q ss_pred cEEEEEccchhhcCChh------hHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++|.|++.+.-.+.... ....+++++.++|+|||.|++.
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 99999865321110000 0147999999999999999986
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-14 Score=119.36 Aligned_cols=105 Identities=19% Similarity=0.131 Sum_probs=83.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC----C-CC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----E-TG 229 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~-~~ 229 (280)
++.+|||+|||+|..+..+++... .+|+++|+++.+++.|++++...++ ..+++++++|+.+... . .+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~ 132 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL-----NDRVEVRTGLALDSLQQIENEKYE 132 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhcCCC
Confidence 567999999999999999987743 3799999999999999999876544 3569999999865321 1 15
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+||+|++.... .....+++.+.++|+|||++++.+..
T Consensus 133 ~fD~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 133 PFDFIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp CCSEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred CcCEEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 79999987552 35678999999999999988776544
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-14 Score=118.44 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=82.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDl 233 (280)
++.+|||+|||+|..+..+++... .+|+++|+|+.+++.|++++...++ ..+++++.+|..++ +..++ ||+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~-fD~ 129 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL-----IDRVELQVGDPLGIAAGQRD-IDI 129 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG-----GGGEEEEESCHHHHHTTCCS-EEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CceEEEEEecHHHHhccCCC-CCE
Confidence 456999999999999999987643 3799999999999999998876433 34689999988654 33336 999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|++... ..+...+++++.++|||||++++.+.
T Consensus 130 v~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 130 LFMDCD-----VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp EEEETT-----TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred EEEcCC-----hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 998743 23667899999999999999987543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.7e-14 Score=121.60 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=84.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-c-CCcEEEEeCCHHHHHHHHHHcCcC-CCCCCCCCcceeEEEccCCCCCCCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~-~~~v~~vD~S~~~l~~A~~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~f 231 (280)
..++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|++++... + ..++++.++|+.+. .++++|
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g------~~~v~~~~~d~~~~-~~~~~f 180 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD------IGNVRTSRSDIADF-ISDQMY 180 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC------CTTEEEECSCTTTC-CCSCCE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC------CCcEEEEECchhcc-CcCCCc
Confidence 456789999999999999999887 2 237999999999999999998653 3 14689999999873 344789
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+|++ +++ +...+++++.++|||||++++..+.
T Consensus 181 D~Vi~-----~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 181 DAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp EEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred cEEEE-----cCc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99998 344 4458999999999999999998654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.4e-14 Score=119.88 Aligned_cols=104 Identities=21% Similarity=0.165 Sum_probs=85.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-c-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|++++...++ ..++++..+|+.+. .++++||
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-~~~~~~D 164 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----DDRVTIKLKDIYEG-IEEENVD 164 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC-----TTTEEEECSCGGGC-CCCCSEE
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC-----CCceEEEECchhhc-cCCCCcC
Confidence 456789999999999999999988 4 33899999999999999999876543 34589999999865 3447899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|+++ .+ +...+++++.++|+|||.+++....
T Consensus 165 ~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 165 HVILD-----LP--QPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp EEEEC-----SS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred EEEEC-----CC--CHHHHHHHHHHHcCCCCEEEEEECC
Confidence 99984 33 4447999999999999999997654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=117.62 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=81.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDl 233 (280)
..++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.|++++...++ .++++..+|+. .+.+ ..+||+
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~-~~~~~~~~fD~ 161 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------KNVHVILGDGS-KGFPPKAPYDV 161 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGG-GCCGGGCCEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC------CCcEEEECCcc-cCCCCCCCccE
Confidence 456679999999999999999887645799999999999999999876433 35889999872 2222 246999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|++..+++++.+ ++.+.|+|||.+++.-+
T Consensus 162 Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 162 IIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp EEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred EEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 999999988772 57899999999999754
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.5e-14 Score=122.18 Aligned_cols=101 Identities=17% Similarity=0.117 Sum_probs=83.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.|++++..+++ .+++..+|+.+. .++++||+|++
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~-------~v~~~~~d~~~~-~~~~~fD~Vv~ 190 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV-------RPRFLEGSLEAA-LPFGPFDLLVA 190 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC-------CCEEEESCHHHH-GGGCCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCC-------cEEEEECChhhc-CcCCCCCEEEE
Confidence 567999999999999999888777 799999999999999999876533 278888887653 22468999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+...+ .+..++..+.++|+|||++++++..
T Consensus 191 n~~~~-----~~~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 191 NLYAE-----LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp ECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCcHH-----HHHHHHHHHHHHcCCCCEEEEEeec
Confidence 76544 3568999999999999999997654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.7e-14 Score=121.91 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=81.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.|++.|+++.. ++.+..+|+.+++..+++||+|
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~~~~~fD~v 152 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-----------QVTFCVASSHRLPFSDTSMDAI 152 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTSCSBCTTCEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC-----------CcEEEEcchhhCCCCCCceeEE
Confidence 356799999999999999998873 3379999999999999998752 4788999998888777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++.++. .+++++.++|||||.+++..+.
T Consensus 153 ~~~~~~---------~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 153 IRIYAP---------CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp EEESCC---------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred EEeCCh---------hhHHHHHHhcCCCcEEEEEEcC
Confidence 987652 3588999999999999998654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=121.00 Aligned_cols=106 Identities=18% Similarity=0.212 Sum_probs=84.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++ .++++.++|+.+... +++||+|+
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~------~~v~~~~~d~~~~~~-~~~fD~Iv 181 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSDWFSALA-GQQFAMIV 181 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCSTTGGGT-TCCEEEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEEcchhhhcc-cCCccEEE
Confidence 4569999999999999999876433 799999999999999999876533 368999999876432 47899999
Q ss_pred ccc-------------hhhcCCh----------hhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQW-------------CIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~-------------~l~~~~~----------~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++. +++|-+. +.+..+++.+.+.|+|||++++..
T Consensus 182 ~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 182 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 983 3333321 356789999999999999999863
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-13 Score=115.10 Aligned_cols=105 Identities=14% Similarity=-0.027 Sum_probs=77.1
Q ss_pred ccCCCCccEEEeecCccHHHHHHHHhcC-C-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CC
Q 023562 153 ARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (280)
Q Consensus 153 ~~~~~~~~VLDlGcG~G~~s~~l~~~~~-~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~ 227 (280)
....++.+|||+|||+|.++..+++... . .|+++|+|+.|++...+.... ..++.++++|+.... ..
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~--------r~nv~~i~~Da~~~~~~~~~ 143 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR--------RPNIFPLLADARFPQSYKSV 143 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH--------CTTEEEEECCTTCGGGTTTT
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCeEEEEcccccchhhhcc
Confidence 3467789999999999999999987633 2 799999999997654443322 246899999987642 12
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.++||+|++.... + +....+...+.+.|||||.|+++.
T Consensus 144 ~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 144 VENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp CCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEE
Confidence 3689999988553 2 233345566677999999999873
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-14 Score=116.48 Aligned_cols=90 Identities=13% Similarity=0.159 Sum_probs=77.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC---CCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~f 231 (280)
..++.+|||+|||. | .+|+|+.|++.|+++... ++++.++|+.++++ ++++|
T Consensus 10 ~~~g~~vL~~~~g~--------------v-~vD~s~~ml~~a~~~~~~----------~~~~~~~d~~~~~~~~~~~~~f 64 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS--------------S-PVEALKGLVDKLQALTGN----------EGRVSVENIKQLLQSAHKESSF 64 (176)
T ss_dssp CCTTSEEEEEECTT--------------S-CHHHHHHHHHHHHHHTTT----------TSEEEEEEGGGGGGGCCCSSCE
T ss_pred CCCCCEEEEecCCc--------------e-eeeCCHHHHHHHHHhccc----------CcEEEEechhcCccccCCCCCE
Confidence 56788999999996 2 299999999999998643 38899999998875 66899
Q ss_pred EEEEccchhhcC-ChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 232 DVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 232 DlV~~~~~l~~~-~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+|+++.+++|+ + +...++++++++|||||++++.+.+
T Consensus 65 D~V~~~~~l~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~ 103 (176)
T 2ld4_A 65 DIILSGLVPGSTTL--HSAEILAEIARILRPGGCLFLKEPV 103 (176)
T ss_dssp EEEEECCSTTCCCC--CCHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEECChhhhccc--CHHHHHHHHHHHCCCCEEEEEEccc
Confidence 999999999999 6 5679999999999999999997654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=111.49 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=80.4
Q ss_pred CCCccEEEeecCccHHHHHHHHh-cC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 156 NQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~-~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
.++.+|||+|||+|.++..+++. +. .+++++|+|+ |++. .++++.++|+.+.+
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------------~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------------VGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------TTEEEEESCTTSHHHHHHHHHH
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------CcEEEEEcccccchhhhhhhcc
Confidence 45679999999999999999887 33 4899999998 7531 35888999998865
Q ss_pred CCCCcEEEEEccchhhcCChhh---------HHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 226 PETGRYDVIWVQWCIGHLTDDD---------FVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d---------~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.++++||+|+++.++++..... ...+++++.++|+|||.+++.+...
T Consensus 84 ~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred CCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 4557999999988887765321 1589999999999999999976543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.5e-14 Score=121.72 Aligned_cols=105 Identities=18% Similarity=0.107 Sum_probs=87.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++..+++ .++.++++|+.++ ...++||+
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l------~~~~~~~~d~~~~-~~~~~~D~ 189 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL------NNVIPILADNRDV-ELKDVADR 189 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC------SSEEEEESCGGGC-CCTTCEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEECChHHc-CccCCceE
Confidence 34567999999999999999988753 3799999999999999999887644 3678999999888 33578999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
|++.... +...++..+.+.|+|||+++++.+..
T Consensus 190 Vi~d~p~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 190 VIMGYVH------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp EEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEECCcc------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 9988653 34478999999999999999998764
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=117.24 Aligned_cols=104 Identities=22% Similarity=0.245 Sum_probs=85.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-c-CCcEEEEeCCHHHHHHHHHHcCcC-CCCCCCCCcceeEEEccCCCCCCCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~-~~~v~~vD~S~~~l~~A~~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~f 231 (280)
..++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|++++... + ..++++..+|+.+.++++++|
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g------~~~v~~~~~d~~~~~~~~~~~ 167 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ------VENVRFHLGKLEEAELEEAAY 167 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------CCCEEEEESCGGGCCCCTTCE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC------CCCEEEEECchhhcCCCCCCc
Confidence 456789999999999999999987 3 348999999999999999987543 2 246899999998876555789
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+|++. .+ +...+++++.++|+|||.+++..+.
T Consensus 168 D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 168 DGVALD-----LM--EPWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp EEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred CEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 999983 33 3447999999999999999998764
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-14 Score=128.84 Aligned_cols=111 Identities=15% Similarity=0.195 Sum_probs=84.9
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecC------ccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCC
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSG------IGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDM 210 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG------~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~ 210 (280)
..++..++... ..++.+||||||| +|..+..++++++ .+|+++|+|+.|. . .
T Consensus 203 ~~~Ye~lL~~l-----~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~-~-------- 262 (419)
T 3sso_A 203 TPHYDRHFRDY-----RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V-D-------- 262 (419)
T ss_dssp HHHHHHHHGGG-----TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G-C--------
T ss_pred HHHHHHHHHhh-----cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h-c--------
Confidence 34555555443 2356799999999 7777777776642 2899999999983 1 1
Q ss_pred CcceeEEEccCCCCCCC------CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 211 HKATNFFCVPLQDFTPE------TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 211 ~~~i~~~~~d~~~~~~~------~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
..+++|+++|+.++++. +++||+|++..+ |+. .+...+|+++.++|||||+|+|.|..+
T Consensus 263 ~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 263 ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred CCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 35799999999987644 579999998754 443 477899999999999999999988763
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.1e-14 Score=120.14 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=84.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C-C-----C
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P-----E 227 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~ 227 (280)
++.+|||+|||+|..+..+++... .+|+++|+|+.+++.|++++...++ ..+++++.+|..++ + . .
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~l~~~~~~ 153 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPALPVLDEMIKDEKN 153 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHSGGG
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHHHHHHHHHhccCC
Confidence 457999999999999999988743 3799999999999999999876544 45799999988654 2 1 1
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+++||+|++... ..+...+++.+.++|||||+|++.+.
T Consensus 154 ~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 154 HGSYDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp TTCBSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred CCCEEEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 478999998643 23667899999999999999987543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-14 Score=119.26 Aligned_cols=105 Identities=10% Similarity=0.111 Sum_probs=84.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C--------
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-------- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-------- 225 (280)
++.+|||+|||+|..+..+++... .+|+++|+|+.+++.|++++...++ ..++++..+|+.+. +
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~~~~~~~~~~~~ 134 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL-----ENKIFLKLGSALETLQVLIDSKSA 134 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHCSSC
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHHHHHHHHHhhccc
Confidence 467999999999999999998753 4899999999999999999876543 34589999887552 1
Q ss_pred ------CC-C-CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 226 ------PE-T-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 226 ------~~-~-~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++ + ++||+|++.... .++..+++.+.++|+|||++++.+.+
T Consensus 135 ~~~~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 135 PSWASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp CGGGTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred ccccccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 11 1 689999987543 35668999999999999999986533
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=121.57 Aligned_cols=106 Identities=21% Similarity=0.272 Sum_probs=82.6
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVI 234 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDlV 234 (280)
+.+|||||||+|.++..+++.... +|++||+++.|++.|++++... ...+++++.+|..++. ..+++||+|
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~------~~~rv~v~~~Da~~~l~~~~~~~fDvI 163 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP------RAPRVKIRVDDARMVAESFTPASRDVI 163 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC------CTTTEEEEESCHHHHHHTCCTTCEEEE
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc------CCCceEEEECcHHHHHhhccCCCCCEE
Confidence 349999999999999999985433 7999999999999999998642 1357999999987652 334789999
Q ss_pred EccchhhcCChhhH--HHHHHHHHHcCCCCcEEEEEe
Q 023562 235 WVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 235 ~~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~e 269 (280)
++....+......+ ..+++.++++|+|||+|++.-
T Consensus 164 i~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 164 IRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp EECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 98643322221222 689999999999999998864
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-14 Score=123.44 Aligned_cols=107 Identities=15% Similarity=0.024 Sum_probs=76.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEE--EccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--CVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~--~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..++++ ..|+++|+|+ |+..+++.. ........++.++ ++|+.+++ +++||
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~----~~~~~~~~~v~~~~~~~D~~~l~--~~~fD 142 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVP----RITESYGWNIVKFKSRVDIHTLP--VERTD 142 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCC----CCCCBTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhh----hhhhccCCCeEEEecccCHhHCC--CCCCc
Confidence 446789999999999999988876 4699999998 643322111 0001112368889 89998876 47999
Q ss_pred EEEccchhhcCChhh---H--HHHHHHHHHcCCCCc--EEEEEecc
Q 023562 233 VIWVQWCIGHLTDDD---F--VSFFKRAKVGLKPGG--FFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d---~--~~~l~~~~r~LkpGG--~lii~e~~ 271 (280)
+|+|..+ ++..... . ..+++.+.++||||| .|++....
T Consensus 143 ~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 143 VIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9999876 4433211 1 138899999999999 99997654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9e-14 Score=123.49 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=81.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--CCCcEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fD 232 (280)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++++...+. .....+++++.+|+.++.. .+++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~~~~~~~~~fD 171 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR--SLADPRATVRVGDGLAFVRQTPDNTYD 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHHhccCCcee
Confidence 356799999999999999998663 34899999999999999998732000 0013578999999877642 357999
Q ss_pred EEEccchhhcCChhhH--HHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~e 269 (280)
+|++.....+.+...+ ..+++.+.++|||||++++..
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9999765544332333 589999999999999999863
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=116.22 Aligned_cols=107 Identities=20% Similarity=0.163 Sum_probs=83.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC------CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~------~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 225 (280)
..++.+|||+|||+|.++..+++... .+|+++|+|+.+++.|++++...++... ...++++..+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELL-KIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGG-SSTTEEEEECCGGGCCHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcccc-ccCCEEEEECChHhccccc
Confidence 34667999999999999999988754 2799999999999999998765421000 0146899999987754
Q ss_pred -CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
...++||+|++...++++ ++.+.+.|+|||++++.-.
T Consensus 157 ~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEc
Confidence 344789999999888764 3668899999999998743
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-13 Score=124.14 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=85.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCc-ceeEEEccCCCCCCC----CCcE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTPE----TGRY 231 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~----~~~f 231 (280)
++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|++++..+++ .. +++++++|+.++... .++|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl-----~~~~v~~i~~D~~~~l~~~~~~~~~f 226 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGL-----EQAPIRWICEDAMKFIQREERRGSTY 226 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTC-----TTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECcHHHHHHHHHhcCCCc
Confidence 456999999999999999998877 799999999999999999876543 22 489999998775321 3689
Q ss_pred EEEEccch-hhcC-------ChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 232 DVIWVQWC-IGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 232 DlV~~~~~-l~~~-------~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
|+|+++-. +..- ..+++..+++.+.++|+|||+|++...+.
T Consensus 227 D~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 227 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred eEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 99998532 1100 01367789999999999999988775554
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-13 Score=121.92 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=72.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fDl 233 (280)
++.+|||+|||||.++..+++++..+|+++|+|+.||+.+.++... ...+...++..+. ++..+||+
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~r----------v~~~~~~ni~~l~~~~l~~~~fD~ 154 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDR----------VRSMEQYNFRYAEPVDFTEGLPSF 154 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTT----------EEEECSCCGGGCCGGGCTTCCCSE
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcc----------cceecccCceecchhhCCCCCCCE
Confidence 4579999999999999999988777899999999999986543211 0111122332222 22245999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|++..+++++ ..++.++.++|+|||.+++.
T Consensus 155 v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 155 ASIDVSFISL-----NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp EEECCSSSCG-----GGTHHHHHHHSCTTCEEEEE
T ss_pred EEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEE
Confidence 9998887755 47999999999999999886
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-13 Score=121.02 Aligned_cols=110 Identities=19% Similarity=0.091 Sum_probs=88.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..++..+ . ..|+|+|+|+.|++.|++++...++ . +++|.++|+.+++.+..+||
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~-----~-~i~~~~~D~~~~~~~~~~~D 274 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL-----S-WIRFLRADARHLPRFFPEVD 274 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC-----T-TCEEEECCGGGGGGTCCCCS
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC-----C-ceEEEeCChhhCccccCCCC
Confidence 4566799999999999999998876 2 3799999999999999999887654 3 79999999999876556799
Q ss_pred EEEccchhhcCC--h----hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLT--D----DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~--~----~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|+++-.+.... . ..+..+++.+.++|+|||.+++...
T Consensus 275 ~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 275 RILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp EEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred EEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999974433211 1 1237899999999999999998743
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-13 Score=113.75 Aligned_cols=104 Identities=22% Similarity=0.279 Sum_probs=85.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|+++....++ ..++++...|+.+....+++||+|
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~v 162 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNL-----GKNVKFFNVDFKDAEVPEGIFHAA 162 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTC-----CTTEEEECSCTTTSCCCTTCBSEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCC-----CCcEEEEEcChhhcccCCCcccEE
Confidence 446779999999999999999988 55799999999999999998866433 356899999998765344689999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+++ .+ +...+++.+.++|+|||.+++..+.
T Consensus 163 ~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 163 FVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp EEC-----SS--CGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred EEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 974 22 4447899999999999999997653
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-13 Score=114.50 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=82.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|..+..+++.. . .+|+++|+|+.+++.+++++...+..... ..++++..+|+.......++||
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~fD 153 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS-SGRVQLVVGDGRMGYAEEAPYD 153 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHH-TSSEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccC-CCcEEEEECCcccCcccCCCcC
Confidence 3466799999999999999998774 3 37999999999999999887653210000 1368899999876554457899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++...++++. +++.++|||||.+++...
T Consensus 154 ~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 154 AIHVGAAAPVVP--------QALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EEEECCchHHHH--------HHHHHhcCCCcEEEEEEe
Confidence 999998876654 468899999999999743
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=123.84 Aligned_cols=101 Identities=14% Similarity=0.271 Sum_probs=86.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
+..+|||+|||+|.++..++++++. +++++|+ +.+++.+++ ..++++..+|+.+ +.+ +||+|+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~~--~~D~v~ 256 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------------NENLNFVGGDMFK-SIP--SADAVL 256 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------------CSSEEEEECCTTT-CCC--CCSEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------------CCCcEEEeCccCC-CCC--CceEEE
Confidence 4579999999999999999988765 7999999 788876543 1348999999977 443 499999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCC---CcEEEEEeccCC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLKENIAR 273 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~Lkp---GG~lii~e~~~~ 273 (280)
+.+++||+++++...+++++.++|+| ||++++.|.+..
T Consensus 257 ~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 297 (358)
T 1zg3_A 257 LKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISID 297 (358)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred EcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence 99999999977778999999999999 999999998754
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=116.38 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=83.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C-C-----C
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P-----E 227 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~ 227 (280)
++.+|||+|||+|..+..+++... .+|+++|+|+.+++.|++++...++ ..+++++.+|..++ + . +
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~l~~~~~~ 144 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV-----EHKINFIESDAMLALDNLLQGQES 144 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhccCC
Confidence 457999999999999999988743 3899999999999999999876544 45799999987654 1 1 1
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.++||+|++... ..+...+++.+.++|+|||+|++.+
T Consensus 145 ~~~fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 145 EGSYDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp TTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCcCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 478999997633 3467789999999999999987754
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-13 Score=110.68 Aligned_cols=96 Identities=15% Similarity=0.225 Sum_probs=75.2
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|+++.. +++++++|+.+++ ++||+|+
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----------~~~~~~~d~~~~~---~~~D~v~ 115 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSEIS---GKYDTWI 115 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGGCC---CCEEEEE
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----------CCEEEECcHHHCC---CCeeEEE
Confidence 3567999999999999999988755579999999999999999864 4789999998864 6899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
++..++|..+.....+++++.+.+ |+++++
T Consensus 116 ~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 116 MNPPFGSVVKHSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp ECCCC-------CHHHHHHHHHHE--EEEEEE
T ss_pred ECCCchhccCchhHHHHHHHHHhc--CcEEEE
Confidence 999998887544457899999998 554433
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-14 Score=119.79 Aligned_cols=99 Identities=18% Similarity=0.041 Sum_probs=68.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE-ccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..+++++..+|+++|+|+.|++.|+++....... ...++.+.. .++....+...+||+++
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~D~v~ 113 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVM---EQFNFRNAVLADFEQGRPSFTSIDVSF 113 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEE---CSCCGGGCCGGGCCSCCCSEEEECCSS
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccccc---ccceEEEeCHhHcCcCCCCEEEEEEEh
Confidence 45699999999999999999887668999999999999988765431000 011233333 23322112223555554
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++ + ..+++++.++|||||.+++.
T Consensus 114 ~~-----l-----~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 114 IS-----L-----DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp SC-----G-----GGTHHHHHHHSCTTCEEEEE
T ss_pred hh-----H-----HHHHHHHHHhccCCCEEEEE
Confidence 43 2 37999999999999999986
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-13 Score=117.35 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=85.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcC-C-CCCCCCCcceeEEEccCCCCCCCCCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE-N-HMAPDMHKATNFFCVPLQDFTPETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~-~-~~~~~~~~~i~~~~~d~~~~~~~~~~ 230 (280)
..++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++++... + + ..++++..+|+.+.+.++++
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~-----~~~v~~~~~d~~~~~~~~~~ 171 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP-----PDNWRLVVSDLADSELPDGS 171 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC-----CTTEEEECSCGGGCCCCTTC
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-----CCcEEEEECchHhcCCCCCc
Confidence 4567799999999999999998762 237999999999999999987543 2 1 24689999999887665678
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
||+|++. ++ +...+++++.++|+|||.+++....
T Consensus 172 ~D~v~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 172 VDRAVLD-----ML--APWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp EEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred eeEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 9999983 33 3337999999999999999997654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=115.93 Aligned_cols=105 Identities=11% Similarity=0.156 Sum_probs=83.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CCCC--
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET-- 228 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~-- 228 (280)
++.+|||+|||+|..+..+++... .+|+++|+|+.+++.|++++...++ ..++++..+|+.+. +..+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~~l~~l~~~~~~ 146 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV-----AEKISLRLGPALATLEQLTQGKPL 146 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHHHHHHTSSSC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhcCCC
Confidence 456999999999999999987643 2799999999999999998866443 35689999986542 2222
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++||+|++... ..++..+++++.++|+|||+|++.+..
T Consensus 147 ~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 147 PEFDLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp CCEEEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred CCcCEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 68999997654 246778999999999999999886544
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=116.89 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=81.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-------CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-------~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 227 (280)
..++.+|||+|||+|.++..+++... .+|+++|+++.+++.|++++...+.... ...++++..+|+.+....
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~ 160 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML-DSGQLLIVEGDGRKGYPP 160 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH-HHTSEEEEESCGGGCCGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcccc-CCCceEEEECCcccCCCc
Confidence 34567999999999999998887533 3799999999999999998764210000 013688999998763222
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.++||+|++..+++++. +++.+.|||||++++.-.
T Consensus 161 ~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 161 NAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp GCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 36899999999888765 568899999999999743
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-13 Score=117.12 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=85.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++. +. .+|+++|+|+.+++.|++++...++ ..++++..+|+.+. .++++||
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-~~~~~~D 183 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIKVRDISEG-FDEKDVD 183 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEECCCGGGC-CSCCSEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHHHc-ccCCccC
Confidence 456779999999999999999987 42 4899999999999999999876432 35789999998776 3446899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|+++ .+ +...+++++.++|+|||.+++....
T Consensus 184 ~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 184 ALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp EEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred EEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99984 23 4447999999999999999998764
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-13 Score=113.85 Aligned_cols=107 Identities=16% Similarity=0.002 Sum_probs=88.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..++..+.. +|+++|+++.+++.|++++...++ ..++++.++|+.+...+..+||+|
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl-----~~~I~~~~gD~l~~~~~~~~~D~I 94 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL-----TSKIDVRLANGLSAFEEADNIDTI 94 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhccccccccCEE
Confidence 35679999999999999999987654 799999999999999999988765 457999999987765443479999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++.+.-. +-+..++....+.|+++|+|+++-+.
T Consensus 95 viaGmGg----~lI~~IL~~~~~~l~~~~~lIlqp~~ 127 (230)
T 3lec_A 95 TICGMGG----RLIADILNNDIDKLQHVKTLVLQPNN 127 (230)
T ss_dssp EEEEECH----HHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred EEeCCch----HHHHHHHHHHHHHhCcCCEEEEECCC
Confidence 8765533 24668999999999999999997654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=119.11 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=84.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...++ .++.++++|+.+++..+++||
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~------~~v~~~~~D~~~~~~~~~~fD 189 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIGELNVEFD 189 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGGGGCCCEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC------CeEEEEECChhhcccccccCC
Confidence 45678999999999999999998743 3799999999999999999876543 368999999988754446899
Q ss_pred EEEcc------chhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~------~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|++. .++++.++ .+ ...+++++.++|||||.++++.
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st 246 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST 246 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 99974 22333221 11 2589999999999999999864
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-13 Score=115.40 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=83.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--C--C--C
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P--E--T 228 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~--~--~ 228 (280)
++.+|||+|||+|..+..+++... .+|+++|+|+.+++.|++++...++ ..+++++.+|+.+.. . . .
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~~~~~~~~~~~~ 143 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDLRLKPALETLDELLAAGEA 143 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTTCT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CCeEEEEEcCHHHHHHHHHhcCCC
Confidence 457999999999999999987643 3899999999999999999876543 357899999875531 1 1 1
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++||+|++... ......+++.+.++|+|||++++.+..
T Consensus 144 ~~~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 144 GTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp TCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred CCccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 68999998654 235678999999999999999886544
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-13 Score=119.66 Aligned_cols=107 Identities=11% Similarity=0.026 Sum_probs=76.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEE--EccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--CVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~--~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..++++ ..|+++|+|+ |+..++++. ........++.++ ++|+.+++ +++||
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~----~~~~~~~~~v~~~~~~~D~~~l~--~~~fD 150 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKP----RLVETFGWNLITFKSKVDVTKME--PFQAD 150 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCC----CCCCCTTGGGEEEECSCCGGGCC--CCCCS
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhch----hhhhhcCCCeEEEeccCcHhhCC--CCCcC
Confidence 446789999999999999988877 4699999998 643332211 0001112378899 89998876 47999
Q ss_pred EEEccchhhcCChh---hH--HHHHHHHHHcCCCCc--EEEEEecc
Q 023562 233 VIWVQWCIGHLTDD---DF--VSFFKRAKVGLKPGG--FFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~---d~--~~~l~~~~r~LkpGG--~lii~e~~ 271 (280)
+|+|..+ ++.... .. ..+++.+.++||||| .|++....
T Consensus 151 ~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 151 TVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 9999877 443221 11 137899999999999 99986544
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.3e-13 Score=109.08 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=75.2
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC---CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~---~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
.++.+|||+|||+|.++..++++.. .+|+++|+|+.+ . ..++.+.++|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~--------~~~v~~~~~d~~~~~~~~~~~~ 83 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P--------IPNVYFIQGEIGKDNMNNIKNI 83 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C--------CTTCEEEECCTTTTSSCCC---
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C--------CCCceEEEccccchhhhhhccc
Confidence 4567999999999999999998754 479999999831 1 235888999998765
Q ss_pred ------------------CCCCcEEEEEccchhhcCCh--hh-------HHHHHHHHHHcCCCCcEEEEEec
Q 023562 226 ------------------PETGRYDVIWVQWCIGHLTD--DD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 ------------------~~~~~fDlV~~~~~l~~~~~--~d-------~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+++++||+|++..++++... .+ ...+++++.++|||||.|++...
T Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp --------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 34579999999877665421 11 12489999999999999998643
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7e-13 Score=112.46 Aligned_cols=105 Identities=16% Similarity=0.064 Sum_probs=85.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CCCCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fDl 233 (280)
.++.+|||+|||+|.++..++..+.. +|+++|+++.+++.|++++..+++ ..++++..+|..+ ++.. .+||+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----~~~i~~~~~d~l~~l~~~-~~~D~ 87 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL-----KEKIQVRLANGLAAFEET-DQVSV 87 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCCGG-GCCCE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECchhhhcccC-cCCCE
Confidence 35679999999999999999987654 799999999999999999988765 4579999999843 4322 36999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|++.+.-. +-+..++..+...|+|+|++++.-+
T Consensus 88 IviaG~Gg----~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 88 ITIAGMGG----RLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp EEEEEECH----HHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred EEEcCCCh----HHHHHHHHHHHHHhCCCCEEEEECC
Confidence 99765422 2457899999999999999998655
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.8e-13 Score=113.70 Aligned_cols=107 Identities=12% Similarity=-0.005 Sum_probs=87.2
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..++..+.. .|+++|+++.+++.|++++..+++ ..++++..+|+.+...+..+||+|
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----~~~I~v~~gD~l~~~~~~~~~D~I 94 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL-----TEQIDVRKGNGLAVIEKKDAIDTI 94 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEecchhhccCccccccEE
Confidence 35679999999999999999987654 799999999999999999988765 456999999987755432369999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++...-. +-+..++....+.|+++|+|++.-+.
T Consensus 95 viagmGg----~lI~~IL~~~~~~L~~~~~lIlq~~~ 127 (244)
T 3gnl_A 95 VIAGMGG----TLIRTILEEGAAKLAGVTKLILQPNI 127 (244)
T ss_dssp EEEEECH----HHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred EEeCCch----HHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 8765432 24568999999999999999997653
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.2e-13 Score=116.18 Aligned_cols=105 Identities=12% Similarity=0.032 Sum_probs=80.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcE---EE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY---DV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f---Dl 233 (280)
++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++ ..+++|+++|+.+.. + ++| |+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l-----~~~v~~~~~D~~~~~-~-~~f~~~D~ 195 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-----SDRFFVRKGEFLEPF-K-EKFASIEM 195 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTSEEEEESSTTGGG-G-GGTTTCCE
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECcchhhc-c-cccCCCCE
Confidence 4468999999999999999887223799999999999999999877544 335999999997732 2 578 99
Q ss_pred EEccchhh-----------cCChh------hHHHHHHHHH-HcCCCCcEEEEE
Q 023562 234 IWVQWCIG-----------HLTDD------DFVSFFKRAK-VGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~-----------~~~~~------d~~~~l~~~~-r~LkpGG~lii~ 268 (280)
|+++-... |-+.. +-..+++++. +.|+|||++++.
T Consensus 196 IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 196 ILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp EEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred EEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 99972111 22211 1127899999 999999999984
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-13 Score=119.92 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=80.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcC--CCC---CCCCCcceeEEEccCCCCCCCCCcE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE--NHM---APDMHKATNFFCVPLQDFTPETGRY 231 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~--~~~---~~~~~~~i~~~~~d~~~~~~~~~~f 231 (280)
++.+|||+|||+|.++..++++...+|+++|+++.+++.|++++ .. ++. ......+++++.+|+.++...+++|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 46799999999999999998774448999999999999999988 32 100 0001357899999876531114789
Q ss_pred EEEEccchhhcCChhhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
|+|++....+.-+...+ ..+++.+.++|+|||++++.
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 99998654321111222 68999999999999999986
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-13 Score=116.47 Aligned_cols=97 Identities=11% Similarity=0.065 Sum_probs=77.6
Q ss_pred CCccEEEeecCccHHHHHHHHh----cC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC---CC-C
Q 023562 157 QHLVALDCGSGIGRITKNLLIR----YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TP-E 227 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~----~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~-~ 227 (280)
++.+|||||||+|..+..+++. +. .+|+++|+|+.|++.|+.. ..+++++++|+.+. +. .
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~-----------~~~v~~~~gD~~~~~~l~~~~ 149 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD-----------MENITLHQGDCSDLTTFEHLR 149 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG-----------CTTEEEEECCSSCSGGGGGGS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc-----------CCceEEEECcchhHHHHHhhc
Confidence 3569999999999999998876 22 3799999999999887621 24699999999885 32 2
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHH-cCCCCcEEEEEe
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLKE 269 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r-~LkpGG~lii~e 269 (280)
..+||+|++... |. +...++.++.+ +|||||++++.+
T Consensus 150 ~~~fD~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 150 EMAHPLIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp SSCSSEEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred cCCCCEEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEe
Confidence 247999998654 32 56789999997 999999999965
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-13 Score=120.72 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=82.4
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcC--CCCCCCCCcceeEEEccCCCC--CCCCCc
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQDF--TPETGR 230 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~--~~~~~~~~~~i~~~~~d~~~~--~~~~~~ 230 (280)
.++.+|||+|||+|.++..++++.. .+|+++|+|+.|++.|++++... ++ ...+++++.+|+.++ ...+++
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl----~~~rv~~~~~D~~~~l~~~~~~~ 194 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY----EDPRVNLVIGDGVAFLKNAAEGS 194 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc----CCCcEEEEECCHHHHHHhccCCC
Confidence 3567999999999999999987643 48999999999999999987531 11 024699999997664 123478
Q ss_pred EEEEEccchhhcCChhh--HHHHHHHHHHcCCCCcEEEEE
Q 023562 231 YDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (280)
||+|++........... ...+++.+.++|+|||++++.
T Consensus 195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99999864321111112 368999999999999999997
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-14 Score=121.32 Aligned_cols=107 Identities=13% Similarity=-0.038 Sum_probs=73.0
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC---CCC---CC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPE---TG 229 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~---~~ 229 (280)
++.+|||+|||+|.++..++.+. ..+|+++|+|+.|++.|++++...++ ..+++++++|+.+. +.+ ++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----SDLIKVVKVPQKTLLMDALKEESEI 139 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC-----CccEEEEEcchhhhhhhhhhcccCC
Confidence 46799999999999999888764 24799999999999999999876544 34589999997662 222 25
Q ss_pred cEEEEEccchhhcCCh-------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTD-------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~-------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||+|+++-.+++... .....++..+.++|||||.+.+.
T Consensus 140 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 140 IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp CBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred cccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 8999999855443320 01124556666777777765543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=107.67 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=82.1
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.+++++...+ .+++++++|+.+++ ++||+|+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~---~~~D~v~ 117 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK-------GKFKVFIGDVSEFN---SRVDIVI 117 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT-------TSEEEEESCGGGCC---CCCSEEE
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC-------CCEEEEECchHHcC---CCCCEEE
Confidence 4567999999999999999988866679999999999999999987642 26899999998864 5899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
++..+++........+++.+.+.+ ||.+++
T Consensus 118 ~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 118 MNPPFGSQRKHADRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp ECCCCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred EcCCCccccCCchHHHHHHHHHhc--CcEEEE
Confidence 998877765444567899999998 555443
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-13 Score=117.73 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=82.1
Q ss_pred CCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcC--CCCCCCCCcceeEEEccCCCC-CCCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~--~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD 232 (280)
++.+|||+|||+|.++..++++ +..+|+++|+++.+++.|++++... ++ ...+++++.+|..++ ...+++||
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~----~~~rv~v~~~D~~~~l~~~~~~fD 150 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL----DDPRVDVQVDDGFMHIAKSENQYD 150 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT----TSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc----CCCceEEEECcHHHHHhhCCCCee
Confidence 4679999999999999999876 3458999999999999999987431 11 135799999998664 22347899
Q ss_pred EEEccchhhcCChhh--HHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++.......+... ...+++.+.++|+|||++++.
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 999864432221111 147999999999999999886
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-13 Score=116.86 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=88.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..++.++..+|+++|+|+.+++.+++++..+++ ..+++++++|..++... +.||.|+
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v-----~~~v~~~~~D~~~~~~~-~~~D~Vi 197 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFPGE-NIADRIL 197 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCCCC-SCEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCcHHHhccc-cCCCEEE
Confidence 46789999999999999999988777899999999999999999988766 56799999999988755 7899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++... ....++..+.++|||||+|.+.+++.
T Consensus 198 ~~~p~------~~~~~l~~a~~~lk~gG~ih~~~~~~ 228 (278)
T 3k6r_A 198 MGYVV------RTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp ECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ECCCC------cHHHHHHHHHHHcCCCCEEEEEeeec
Confidence 77431 22367888889999999998877764
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-13 Score=124.69 Aligned_cols=111 Identities=10% Similarity=0.073 Sum_probs=86.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCc-ceeEEEccCCCCCC----CCCcE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTP----ETGRY 231 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~----~~~~f 231 (280)
++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++..+++ .. +++|+++|+.++.. ...+|
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~-----~~~~v~~~~~D~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL-----DMANHQLVVMDVFDYFKYARRHHLTY 286 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTC-----CCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECCHHHHHHHHHHhCCCc
Confidence 4579999999999999999987776899999999999999999887654 23 78999999876421 13589
Q ss_pred EEEEccchh-----hcCCh--hhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 232 DVIWVQWCI-----GHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 232 DlV~~~~~l-----~~~~~--~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
|+|++.-.. .+..+ .++..+++.+.++|+|||+++++.+..
T Consensus 287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999985322 12221 345678899999999999999986643
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-13 Score=119.78 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=80.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCc--CCCCCCCCCcceeEEEccCCCC-CCCCCcE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP--ENHMAPDMHKATNFFCVPLQDF-TPETGRY 231 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~--~~~~~~~~~~~i~~~~~d~~~~-~~~~~~f 231 (280)
.++.+|||+|||+|..+..++++.. .+|+++|+|+.+++.|++++.. .++ ...+++++.+|+.++ +..+++|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~----~~~rv~v~~~Da~~~l~~~~~~f 169 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY----SSSKLTLHVGDGFEFMKQNQDAF 169 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GCTTEEEEESCHHHHHHTCSSCE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc----CCCcEEEEECcHHHHHhhCCCCc
Confidence 3567999999999999999987643 4899999999999999998753 111 035689999997653 2234789
Q ss_pred EEEEccchhhcCChh--hHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~~l~~~~~~--d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|++....+..+.. ....+++++.++|+|||++++..
T Consensus 170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 999986443221111 12579999999999999999864
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.3e-13 Score=117.90 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=84.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDl 233 (280)
.++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.|++++...+.. ....+++++.+|+.++. ..+++||+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG--YEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG--GGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccc--cCCCcEEEEECChHHHHHhCCCCceE
Confidence 356799999999999999998664 348999999999999999998642100 01357899999986642 22478999
Q ss_pred EEccchhhcCChhhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
|++....++.+...+ ..+++.+.++|+|||++++.
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 998644332222233 68999999999999999987
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-13 Score=119.71 Aligned_cols=111 Identities=15% Similarity=0.232 Sum_probs=82.8
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDlV 234 (280)
++.+|||+|||+|..+..++++. ..+|+++|+|+.+++.|++++...+. ..-...+++++.+|+.++ +..+++||+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~-~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc-ccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 55799999999999999998763 34899999999999999998753100 000025689999998764 2234789999
Q ss_pred Eccchhhc---CChhh--HHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGH---LTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~---~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (280)
++....+. -+... ...+++.+.++|+|||++++.
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 99755433 11112 368999999999999999986
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=117.21 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=80.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cC-CcEEEEeCCHHHHHHHHHHcCcCC----CCC-CCCCcceeEEEccCCCC--C
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPEN----HMA-PDMHKATNFFCVPLQDF--T 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~-~~v~~vD~S~~~l~~A~~~~~~~~----~~~-~~~~~~i~~~~~d~~~~--~ 225 (280)
..++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.|++++...+ +.. .....++++..+|+.+. +
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~ 182 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 182 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence 456789999999999999999887 44 489999999999999999876311 000 00124799999999886 3
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.++++||+|++... +...+++.+.++|+|||.+++...
T Consensus 183 ~~~~~fD~V~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 183 IKSLTFDAVALDML-------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp -----EEEEEECSS-------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred cCCCCeeEEEECCC-------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 44568999998533 122489999999999999998754
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-13 Score=122.79 Aligned_cols=110 Identities=13% Similarity=0.056 Sum_probs=87.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC----CCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD 232 (280)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++ ..+++++++|+.++.. ..++||
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFEEMEKLQKKGEKFD 291 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CccceEEECCHHHHHHHHHhhCCCCC
Confidence 5679999999999999999987666899999999999999999887644 2378999999876532 246899
Q ss_pred EEEccchhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|++.-.....+. .++..++..+.++|+|||+++++.+.
T Consensus 292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 9998632211111 35678999999999999999888654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-13 Score=114.78 Aligned_cols=121 Identities=11% Similarity=-0.013 Sum_probs=94.9
Q ss_pred ccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc
Q 023562 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (280)
Q Consensus 135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~ 213 (280)
+.....+...++.. ...+.+|||+|||+|-++..++...+. .|+++|+++.|++.+++++...+ ..
T Consensus 116 Lp~lD~fY~~i~~~------i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g-------~~ 182 (281)
T 3lcv_B 116 LPHLDEFYRELFRH------LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN-------VP 182 (281)
T ss_dssp GGGHHHHHHHHGGG------SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT-------CC
T ss_pred hHhHHHHHHHHHhc------cCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC-------CC
Confidence 33444444444443 234679999999999999988766444 89999999999999999987753 45
Q ss_pred eeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 214 i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.++.+.|+..-+++ ++||+|++.-+++|+.+......+ ++...|+|+|+++-.+.
T Consensus 183 ~~~~v~D~~~~~p~-~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 183 HRTNVADLLEDRLD-EPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp EEEEECCTTTSCCC-SCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred ceEEEeeecccCCC-CCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 78888887665544 789999999999999865544566 89999999999987776
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7e-13 Score=118.63 Aligned_cols=109 Identities=22% Similarity=0.312 Sum_probs=81.8
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV 234 (280)
++.+|||+|||+|.++..++++. ..+|+++|+|+.+++.|++++..... .-...+++++.+|+.++. ..+++||+|
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~--~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISC--GYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSG--GGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcc--ccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 45799999999999999998663 34899999999999999999865200 000257899999976642 224789999
Q ss_pred EccchhhcCC-hhhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLT-DDDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~-~~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
++... .++. ...+ ..+++.+.++|+|||++++.
T Consensus 194 i~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 194 IVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 98643 1221 1222 68999999999999999985
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-13 Score=119.07 Aligned_cols=110 Identities=20% Similarity=0.280 Sum_probs=79.4
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDlV 234 (280)
++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.|++++...+. .-...+++++.+|+.++ +..+++||+|
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~--~~~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG--GGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcc--ccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence 45799999999999999998763 34899999999999999999864210 00135789999998664 2234789999
Q ss_pred EccchhhcCCh-hhH--HHHHHHHHHcCCCCcEEEEEe
Q 023562 235 WVQWCIGHLTD-DDF--VSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 235 ~~~~~l~~~~~-~d~--~~~l~~~~r~LkpGG~lii~e 269 (280)
++... +++.+ ..+ ..+++.+.++|+|||++++..
T Consensus 186 i~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 186 ITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 98653 22222 222 689999999999999999863
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=113.89 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=79.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.+.+|||+|||+|..+..++++. .+|+++|+++.|++.|++++..... .....+++++.+|..++. ++||+|++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~--~~~~~rv~~~~~D~~~~~---~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQLLDLDI---KKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHH--HHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhcc--ccCCCeEEEEechHHHHH---hhCCEEEE
Confidence 45799999999999999998775 7899999999999999987653100 001246899999987765 68999998
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.. +++ ..+++.+.++|+|||++++.
T Consensus 146 d~-----~dp--~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 146 LQ-----EPD--IHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp SS-----CCC--HHHHHHHHTTEEEEEEEEEE
T ss_pred CC-----CCh--HHHHHHHHHhcCCCcEEEEE
Confidence 62 222 25999999999999999986
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=117.21 Aligned_cols=99 Identities=10% Similarity=0.067 Sum_probs=82.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CCC-CCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTP-ETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~fDl 233 (280)
++.+|||+| |+|.++..++..+. .+|+++|+|+.|++.|++++...++ . +++++++|+.+ ++. .+++||+
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~-----~-~v~~~~~D~~~~l~~~~~~~fD~ 244 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY-----E-DIEIFTFDLRKPLPDYALHKFDT 244 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC-----C-CEEEECCCTTSCCCTTTSSCBSE
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----C-CEEEEEChhhhhchhhccCCccE
Confidence 467999999 99999999988776 4899999999999999999876543 2 79999999988 553 2468999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (280)
|+++..++.. ....+++++.++|||||.+
T Consensus 245 Vi~~~p~~~~---~~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 245 FITDPPETLE---AIRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp EEECCCSSHH---HHHHHHHHHHHTBCSTTCE
T ss_pred EEECCCCchH---HHHHHHHHHHHHcccCCeE
Confidence 9998655432 3578999999999999944
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.34 E-value=9.9e-13 Score=114.96 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=83.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC----CC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~ 228 (280)
..++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...++ .++++.++|+.+++. ..
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~~~~~~~ 154 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV------LNTIIINADMRKYKDYLLKNE 154 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCHHHHHHHHHHTT
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC------CcEEEEeCChHhcchhhhhcc
Confidence 45677999999999999999987532 4799999999999999999876543 368999999877643 24
Q ss_pred CcEEEEEccc------hhhcC---Ch-------hhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 229 GRYDVIWVQW------CIGHL---TD-------DDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~------~l~~~---~~-------~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++||+|++.- ++.+- +. .....+++.+.++|||||.++++.
T Consensus 155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st 211 (274)
T 3ajd_A 155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST 211 (274)
T ss_dssp CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 6899999862 22110 00 244689999999999999998864
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-12 Score=109.30 Aligned_cols=103 Identities=12% Similarity=-0.060 Sum_probs=86.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+. ....++++|+++.|++.+++++... +.+..+...|+..-+++ ++||+|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~-------g~~~~~~v~D~~~~~~~-~~~DvvL 173 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREK-------DWDFTFALQDVLCAPPA-EAGDLAL 173 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHT-------TCEEEEEECCTTTSCCC-CBCSEEE
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhc-------CCCceEEEeecccCCCC-CCcchHH
Confidence 357799999999999999877 4448999999999999999997654 45788999998877665 6999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+.-++||+.+.+....+ ++...|+++|+++-.+
T Consensus 174 llk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 174 IFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp EESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 99999998765444455 8888999999888777
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.1e-13 Score=129.29 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=88.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++ +...++||+|+
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~----~~~v~~i~~D~~~~l~~~~~~fD~Ii 614 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT----GRAHRLIQADCLAWLREANEQFDLIF 614 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----STTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHhcCCCccEEE
Confidence 45799999999999999998877778999999999999999999876541 14699999998774 22347899999
Q ss_pred ccch-----------hhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWC-----------IGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~-----------l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+.-. +... .++..+++.+.++|+|||+++++-+.
T Consensus 615 ~DPP~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 615 IDPPTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp ECCCSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 8632 1111 36788999999999999999987665
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=120.45 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=87.2
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC----CCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD 232 (280)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++.. ...+||
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~----~~~v~~~~~D~~~~~~~~~~~~~~fD 295 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECCHHHHHHHHHhcCCCCC
Confidence 45799999999999999999887668999999999999999998765320 1268999999877532 136899
Q ss_pred EEEccchh---------hcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 233 VIWVQWCI---------GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 233 lV~~~~~l---------~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+|++.-.. ... ..+..++..+.+.|+|||+++++.+..
T Consensus 296 ~Ii~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 296 VIVMDPPKFVENKSQLMGAC--RGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp EEEECCSSTTTCSSSSSCCC--THHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEEECCCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99987321 111 367789999999999999999986643
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=115.64 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=79.3
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCc--CCCCCCCCCcceeEEEccCCCC-CCCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP--ENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~--~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD 232 (280)
.+.+|||+|||+|..+..++++. ..+|+++|+|+.+++.|++++.. .++ ...+++++.+|+.++ +..+++||
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~----~~~~v~~~~~D~~~~l~~~~~~fD 165 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF----DDPRAEIVIANGAEYVRKFKNEFD 165 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG----GCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc----CCCceEEEECcHHHHHhhCCCCce
Confidence 45799999999999999998763 35899999999999999998743 111 025789999997653 22346899
Q ss_pred EEEccchhhcCCh-h--hHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTD-D--DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~-~--d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++...-..+.+ . ....+++.+.++|+|||++++.
T Consensus 166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9998533210211 1 1268999999999999999986
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=115.54 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=86.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~ 230 (280)
..++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...++ .++.+.++|+.+++ +++++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI------KIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCTTCCSSSSCSSC
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEEEcChhhcchhhccCC
Confidence 45677999999999999999988643 3799999999999999999876543 36899999998875 33368
Q ss_pred EEEEEc------cchhhcCChh-------hH-------HHHHHHHHHcCCCCcEEEEEec
Q 023562 231 YDVIWV------QWCIGHLTDD-------DF-------VSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 231 fDlV~~------~~~l~~~~~~-------d~-------~~~l~~~~r~LkpGG~lii~e~ 270 (280)
||+|++ ..++++.++. ++ ..+++.+.++|||||.+++++.
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999995 2344444421 11 5789999999999999998753
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-12 Score=119.64 Aligned_cols=108 Identities=20% Similarity=0.140 Sum_probs=85.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC----CCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD 232 (280)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++..+++ .+++++++|+.++.. ..++||
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~------~~~~~~~~d~~~~~~~~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CCceEEECCHHHHHHHHHhcCCCee
Confidence 5679999999999999999887 55799999999999999999887654 348999999877532 146899
Q ss_pred EEEccchhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|++.-.....+. ..+..++..+.++|+|||+++++.+.
T Consensus 282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9998532111110 35678999999999999999998764
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.1e-12 Score=111.78 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=77.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++....+. ..+++++++|+.+++.+ +||+|
T Consensus 26 ~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~D~~~~~~~--~fD~v 97 (285)
T 1zq9_A 26 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPV-----ASKLQVLVGDVLKTDLP--FFDTC 97 (285)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEESCTTTSCCC--CCSEE
T ss_pred CCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcceecccch--hhcEE
Confidence 44667999999999999999998865 699999999999999999865432 25799999999887654 79999
Q ss_pred EccchhhcCChhhHHHHH--------------HHH--HHcCCCCcEEE
Q 023562 235 WVQWCIGHLTDDDFVSFF--------------KRA--KVGLKPGGFFV 266 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l--------------~~~--~r~LkpGG~li 266 (280)
+++..++..+ +.+..++ +++ +++|+|||.++
T Consensus 98 v~nlpy~~~~-~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 98 VANLPYQISS-PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp EEECCGGGHH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred EEecCcccch-HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 9975443222 2222332 223 36899999764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.4e-12 Score=114.19 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=82.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++..+.. +|+|+|+|+.|++.|++++...++ ..++++.++|+.+++.++++||+|+
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl-----~~~i~~~~~D~~~~~~~~~~fD~Ii 291 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV-----LDKIKFIQGDATQLSQYVDSVDFAI 291 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC-----GGGCEEEECCGGGGGGTCSCEEEEE
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChhhCCcccCCcCEEE
Confidence 5679999999999999999887653 799999999999999999887654 4579999999999876668999999
Q ss_pred ccchhhcCC-----hhh-HHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLT-----DDD-FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~-----~~d-~~~~l~~~~r~LkpGG~lii~ 268 (280)
++..++.-. -.+ +..+++.+.++| +|+.++++
T Consensus 292 ~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~ 329 (373)
T 3tm4_A 292 SNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT 329 (373)
T ss_dssp EECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEE
T ss_pred ECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 985533211 012 367899999988 44444444
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-12 Score=105.77 Aligned_cols=99 Identities=22% Similarity=0.250 Sum_probs=72.4
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC----------CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEE-EccCCCC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF----------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQDF 224 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~----------~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~-~~d~~~~ 224 (280)
.++.+|||+|||+|.++..+++... .+|+++|+|+.+ . ..++++. .+|+.+.
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~--------~~~~~~~~~~d~~~~ 83 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P--------LEGATFLCPADVTDP 83 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C--------CTTCEEECSCCTTSH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c--------CCCCeEEEeccCCCH
Confidence 4567999999999999999998743 479999999831 0 1347788 8887654
Q ss_pred C--------CCCCcEEEEEccchhhc----CChh-----hHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 225 T--------PETGRYDVIWVQWCIGH----LTDD-----DFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 225 ~--------~~~~~fDlV~~~~~l~~----~~~~-----d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
. .++++||+|++...++. ..+. ....+++++.++|||||.|++....
T Consensus 84 ~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 84 RTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 2 22358999998654432 1211 0147899999999999999998653
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-12 Score=116.84 Aligned_cols=107 Identities=11% Similarity=-0.043 Sum_probs=81.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++..+.. |+++|+|+.|++.|++++..+++ ..++.++|+.++. ...++||+|+
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~-------~~~~~~~D~~~~l~~~~~~fD~Ii 285 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGL-------RVDIRHGEALPTLRGLEGPFHHVL 285 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTC-------CCEEEESCHHHHHHTCCCCEEEEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCC-------CCcEEEccHHHHHHHhcCCCCEEE
Confidence 4789999999999999999988776 99999999999999999877644 2356688876642 1124599999
Q ss_pred ccchhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+.-....-.. .++..++..+.++|+|||++++..+.
T Consensus 286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 8633111000 25578999999999999999977654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.1e-12 Score=113.68 Aligned_cols=100 Identities=9% Similarity=0.047 Sum_probs=83.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++.. +. +..+|+++|+|+.+++.|++++..+++ ..+++++++|+.++. ++||+|++
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l-----~~~v~~~~~D~~~~~---~~fD~Vi~ 264 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKL-----EHKIIPILSDVREVD---VKGNRVIM 264 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCGGGCC---CCEEEEEE
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECChHHhc---CCCcEEEE
Confidence 567999999999999998 75 566899999999999999999887654 347999999998876 78999998
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.... ....++..+.++|+|||++++.++..
T Consensus 265 dpP~------~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 265 NLPK------FAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp CCTT------TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred CCcH------hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 6321 11278999999999999999987643
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.27 E-value=8.4e-12 Score=112.52 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=84.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC------CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG 229 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~------~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 229 (280)
.++.+|||+|||+|.++..+++... .+++|+|+++.+++.|+.+....+ .++++.++|...... .+
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-------~~~~i~~~D~l~~~~-~~ 200 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-------QKMTLLHQDGLANLL-VD 200 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-------CCCEEEESCTTSCCC-CC
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-------CCceEEECCCCCccc-cC
Confidence 3567999999999999998887653 479999999999999999876542 257889998765432 36
Q ss_pred cEEEEEccchhhcCChhhH----------------HHHHHHHHHcCCCCcEEEEEe
Q 023562 230 RYDVIWVQWCIGHLTDDDF----------------VSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~----------------~~~l~~~~r~LkpGG~lii~e 269 (280)
+||+|+++-.+++++.++. ..+++.+.+.|+|||++++.-
T Consensus 201 ~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 201 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 8999999977766653332 268999999999999998875
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=113.85 Aligned_cols=108 Identities=17% Similarity=0.062 Sum_probs=85.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~f 231 (280)
..++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...++ ++.+.++|+.+++ .++++|
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-------~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-------KATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-------CCEEEECCTTCTHHHHTTCCE
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-------CeEEEeCchhhchhhcccCCC
Confidence 45678999999999999999998765 3799999999999999999876532 4788999988775 344689
Q ss_pred EEEEcc------chhhcCChh-------hH-------HHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQ------WCIGHLTDD-------DF-------VSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~------~~l~~~~~~-------d~-------~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|++. .++++.++. ++ ..+++.+.++|||||++++++
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst 374 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 374 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999952 344444421 11 488999999999999999875
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.25 E-value=5.9e-12 Score=104.29 Aligned_cols=97 Identities=15% Similarity=0.034 Sum_probs=71.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC--------
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-------- 227 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-------- 227 (280)
.++.+|||+|||+|.++..++++ ...|+++|+++.. . ..+++++++|+.+....
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~---------~--------~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME---------E--------IAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC---------C--------CTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred CCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc---------c--------CCCeEEEEccccCHHHHHHHHHHhh
Confidence 46789999999999999998877 4479999998741 1 24689999999876411
Q ss_pred ---CCcEEEEEccchhh--------cCCh-hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 228 ---TGRYDVIWVQWCIG--------HLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 228 ---~~~fDlV~~~~~l~--------~~~~-~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.++||+|++..... +... .....+++.+.++|||||.|++...
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 04899999864321 1100 1235789999999999999998654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-11 Score=114.80 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=84.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDl 233 (280)
++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...++ .++.+.++|+.+++. .+++||+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~------~nv~~~~~D~~~~~~~~~~~fD~ 190 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI------SNVALTHFDGRVFGAAVPEMFDA 190 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCCSTTHHHHSTTCEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHhhhhccccCCE
Confidence 678999999999999999998743 3799999999999999999876543 368899999988653 3478999
Q ss_pred EEcc------chhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~------~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~e 269 (280)
|++. .++.+.++ .+ ...+++++.++|||||+++++.
T Consensus 191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT 246 (479)
T 2frx_A 191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST 246 (479)
T ss_dssp EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9972 23333221 11 2478999999999999998864
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-12 Score=113.45 Aligned_cols=104 Identities=10% Similarity=-0.027 Sum_probs=72.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeC----CHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCCCCCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~----S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~ 229 (280)
..++.+|||+|||+|.++..++++ ..|+++|+ ++.+++.++ .... ...++.+.++ |+..++ ++
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~------~~~~v~~~~~~D~~~l~--~~ 147 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTY------GWNLVRLQSGVDVFFIP--PE 147 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCST------TGGGEEEECSCCTTTSC--CC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhc------CCCCeEEEeccccccCC--cC
Confidence 345689999999999999988876 36999999 565442110 1100 0246889988 887765 36
Q ss_pred cEEEEEccchhh---cCChhh-HHHHHHHHHHcCCCCcEEEEEec
Q 023562 230 RYDVIWVQWCIG---HLTDDD-FVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 230 ~fDlV~~~~~l~---~~~~~d-~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+||+|+|..+++ +..+.. ...++..+.++|||||.|++...
T Consensus 148 ~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 148 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 899999976653 211111 12588999999999999998643
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=9.5e-12 Score=116.18 Aligned_cols=108 Identities=14% Similarity=0.065 Sum_probs=83.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~f 231 (280)
..++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...++ . +.+.++|+.++.. .+++|
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~------~-v~~~~~Da~~l~~~~~~~F 171 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA------P-LAVTQAPPRALAEAFGTYF 171 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC------C-CEEECSCHHHHHHHHCSCE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------e-EEEEECCHHHhhhhccccC
Confidence 45678999999999999999997743 2799999999999999999887644 2 7888888876641 24789
Q ss_pred EEEEcc------chhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~------~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|++. .++.+-++ ++ ...+++.+.++|||||+++++.
T Consensus 172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT 229 (464)
T 3m6w_A 172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229 (464)
T ss_dssp EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999952 23333221 11 2679999999999999998863
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=8.1e-11 Score=109.04 Aligned_cols=99 Identities=21% Similarity=0.211 Sum_probs=77.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+ .+|+++|+|+.|++.|++++..+++ . ++|+++|+.++... +||+|++
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl------~-v~~~~~d~~~~~~~--~fD~Vv~ 359 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNV------D-AEFEVASDREVSVK--GFDTVIV 359 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTC------C-EEEEECCTTTCCCT--TCSEEEE
T ss_pred CCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCC------c-EEEEECChHHcCcc--CCCEEEE
Confidence 45799999999999999998764 4799999999999999999876543 2 89999999887533 8999998
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.-....+. ..+++.+. .|+|||+++++-|
T Consensus 360 dPPr~g~~----~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 360 DPPRAGLH----PRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp CCCTTCSC----HHHHHHHH-HHCCSEEEEEESC
T ss_pred cCCccchH----HHHHHHHH-hcCCCcEEEEECC
Confidence 65432222 24555554 4899999999844
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.5e-11 Score=112.16 Aligned_cols=109 Identities=13% Similarity=0.020 Sum_probs=83.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (280)
..++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...++ .++.+.+.|..++. ..+++|
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~------~nv~v~~~Da~~l~~~~~~~F 176 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV------SNAIVTNHAPAELVPHFSGFF 176 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC------SSEEEECCCHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhhhccccC
Confidence 45678999999999999999987633 3799999999999999999887654 35888888887654 124789
Q ss_pred EEEEcc------chhhcCCh-------h-------hHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQ------WCIGHLTD-------D-------DFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~------~~l~~~~~-------~-------d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|++. .++.+-++ + ....+++.+.++|||||.++++.
T Consensus 177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 (456)
T ss_dssp EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999963 22222111 0 12378999999999999998753
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=107.99 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=78.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 230 (280)
..++.+|||+|||+|.++..+++. ..+|+++|+|+.|++.|++++..+++ .+++|+++|+.+.. ..+++
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~------~~v~f~~~d~~~~l~~~~~~~~~ 356 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL------QNVTFYHENLEEDVTKQPWAKNG 356 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCTTSCCSSSGGGTTC
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEECCHHHHhhhhhhhcCC
Confidence 345679999999999999999877 44799999999999999999876543 37999999998732 23468
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
||+|+++-....+ ..+++.+.+ ++|+++++++-|
T Consensus 357 fD~Vv~dPPr~g~-----~~~~~~l~~-~~p~~ivyvsc~ 390 (433)
T 1uwv_A 357 FDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVSCN 390 (433)
T ss_dssp CSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEESC
T ss_pred CCEEEECCCCccH-----HHHHHHHHh-cCCCeEEEEECC
Confidence 9999986442221 245555544 789999988754
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.1e-11 Score=103.82 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=71.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.+++++...++ .+++++++|+.+++. .+||+|
T Consensus 40 ~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~------~~v~~~~~D~~~~~~--~~~D~V 110 (299)
T 2h1r_A 40 IKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGY------NNLEVYEGDAIKTVF--PKFDVC 110 (299)
T ss_dssp CCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTC------CCEEC----CCSSCC--CCCSEE
T ss_pred CCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC------CceEEEECchhhCCc--ccCCEE
Confidence 44667999999999999999987744 799999999999999998754321 468899999988764 489999
Q ss_pred EccchhhcCChhhHHHHH---------------HHHHHcCCCCc
Q 023562 235 WVQWCIGHLTDDDFVSFF---------------KRAKVGLKPGG 263 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l---------------~~~~r~LkpGG 263 (280)
+++...+ +..+.+..++ +.+.|+++|+|
T Consensus 111 v~n~py~-~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 111 TANIPYK-ISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp EEECCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred EEcCCcc-cccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 9975543 3333444444 34667888877
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.7e-10 Score=96.96 Aligned_cols=73 Identities=23% Similarity=0.303 Sum_probs=59.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC-CcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~fDl 233 (280)
..++.+|||+|||+|.++..+++++ .+|+++|+|+.|++.+++++.. ..+++++++|+.++++++ .+|+
T Consensus 28 ~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~--------~~~v~~~~~D~~~~~~~~~~~~~- 97 (244)
T 1qam_A 28 LNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDILQFKFPKNQSYK- 97 (244)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGGGCCCCSSCCCE-
T ss_pred CCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc--------CCCeEEEEChHHhCCcccCCCeE-
Confidence 4466799999999999999999887 4699999999999999998864 246999999998887653 4564
Q ss_pred EEcc
Q 023562 234 IWVQ 237 (280)
Q Consensus 234 V~~~ 237 (280)
|+++
T Consensus 98 vv~n 101 (244)
T 1qam_A 98 IFGN 101 (244)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4444
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=105.06 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=84.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC---------------------------------------CcEEEEeCCHHHHHH
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDA 195 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~---------------------------------------~~v~~vD~S~~~l~~ 195 (280)
..++.+|||.+||+|.+++.++..+. ..|+|+|+|+.|++.
T Consensus 193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~ 272 (385)
T 3ldu_A 193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI 272 (385)
T ss_dssp CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence 44567999999999999998876532 259999999999999
Q ss_pred HHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhh-cCC-hhhHHHHHHHHHHcCCC--CcEEEEE
Q 023562 196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLT-DDDFVSFFKRAKVGLKP--GGFFVLK 268 (280)
Q Consensus 196 A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~-~~~-~~d~~~~l~~~~r~Lkp--GG~lii~ 268 (280)
|++++...++ ..+++|.++|+.+++.+ .+||+|+++-.+. .+. .+++..+++.+.+.||+ ||.+++.
T Consensus 273 Ar~Na~~~gl-----~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 343 (385)
T 3ldu_A 273 ARENAEIAGV-----DEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLI 343 (385)
T ss_dssp HHHHHHHHTC-----GGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEE
T ss_pred HHHHHHHcCC-----CCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 9999887654 34799999999998765 6899999985432 222 24667788888888876 7776664
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-10 Score=104.53 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=82.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC---------------------------------------CcEEEEeCCHHHHHH
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDA 195 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~---------------------------------------~~v~~vD~S~~~l~~ 195 (280)
..++..|||.+||+|.+++..+.... ..|+|+|+|+.|++.
T Consensus 199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~ 278 (393)
T 3k0b_A 199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI 278 (393)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence 34567899999999999988776543 149999999999999
Q ss_pred HHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhh-cCC-hhhHHHHHHHHHHcCCC--CcEEEEE
Q 023562 196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLT-DDDFVSFFKRAKVGLKP--GGFFVLK 268 (280)
Q Consensus 196 A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~-~~~-~~d~~~~l~~~~r~Lkp--GG~lii~ 268 (280)
|++++...++ ..++++.++|+.+++.+ .+||+|+++-.+. .+. ..++..+++.+.+.||+ ||.+++.
T Consensus 279 Ar~Na~~~gl-----~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 349 (393)
T 3k0b_A 279 AKQNAVEAGL-----GDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVL 349 (393)
T ss_dssp HHHHHHHTTC-----TTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred HHHHHHHcCC-----CCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999887655 34689999999998765 5899999994321 122 24566777777777766 8777664
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.7e-10 Score=101.52 Aligned_cols=108 Identities=13% Similarity=0.065 Sum_probs=85.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC---------------------------------------cEEEEeCCHHHHHH
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN---------------------------------------EVDLLEPVSHFLDA 195 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~---------------------------------------~v~~vD~S~~~l~~ 195 (280)
..++..|||.+||+|.+++..+....+ .|+|+|+|+.|++.
T Consensus 192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~ 271 (384)
T 3ldg_A 192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI 271 (384)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence 345678999999999999887765331 49999999999999
Q ss_pred HHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccch--hhcCChhhHHHHHHHHHHcCCC--CcEEEEE
Q 023562 196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC--IGHLTDDDFVSFFKRAKVGLKP--GGFFVLK 268 (280)
Q Consensus 196 A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~--l~~~~~~d~~~~l~~~~r~Lkp--GG~lii~ 268 (280)
|++++...++ ...+++.++|+.+++.+ .+||+|+++-- ...-...++..+++.+.+.||+ ||.+++.
T Consensus 272 Ar~Na~~~gl-----~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 342 (384)
T 3ldg_A 272 ARKNAREVGL-----EDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFIL 342 (384)
T ss_dssp HHHHHHHTTC-----TTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred HHHHHHHcCC-----CCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 9999987655 45699999999998765 58999999933 3222335778888888888877 8877665
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-10 Score=106.61 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=83.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc--------------CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~--------------~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d 220 (280)
+.++.+|||.|||+|.++..+++.. ..+++|+|+++.+++.|+.+....++. ..++++.++|
T Consensus 169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~----~~~~~i~~gD 244 (445)
T 2okc_A 169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----TDRSPIVCED 244 (445)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----SSCCSEEECC
T ss_pred CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC----cCCCCEeeCC
Confidence 3456799999999999998877642 236999999999999999887654331 0157789999
Q ss_pred CCCCCCCCCcEEEEEccchhhcCChhh---------------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 221 LQDFTPETGRYDVIWVQWCIGHLTDDD---------------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 221 ~~~~~~~~~~fDlV~~~~~l~~~~~~d---------------~~~~l~~~~r~LkpGG~lii~e 269 (280)
....+.. .+||+|+++-.+.+..+.+ ...+++.+.+.|+|||.+.+.-
T Consensus 245 ~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 245 SLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp TTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 8776544 4899999996665533211 2479999999999999998764
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.6e-12 Score=107.86 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=76.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC-CcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~fDl 233 (280)
..++.+|||+|||+|.++..+++.+ .+|+++|+|+.|++.++++... ..+++++++|+.+++.+. ++| .
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~--------~~~v~~~~~D~~~~~~~~~~~f-~ 96 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL--------NTRVTLIHQDILQFQFPNKQRY-K 96 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT--------CSEEEECCSCCTTTTCCCSSEE-E
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc--------CCceEEEECChhhcCcccCCCc-E
Confidence 4466799999999999999999886 5799999999999998877652 357899999999887553 689 6
Q ss_pred EEccchhhcCChhhHH----------HHH----HHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFV----------SFF----KRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~----------~~l----~~~~r~LkpGG~lii~ 268 (280)
|+++-.. +.+...+. .++ +.+.++|+|||.+.+.
T Consensus 97 vv~n~Py-~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 97 IVGNIPY-HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp EEEECCS-SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred EEEeCCc-cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 6665221 11111111 334 6799999999987764
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-10 Score=105.97 Aligned_cols=97 Identities=18% Similarity=0.131 Sum_probs=74.4
Q ss_pred CCccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
++.+|||+|||+|.++..++++. ..+++|+|+++.+++.| .+++++++|+.++... ++||+|
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------~~~~~~~~D~~~~~~~-~~fD~I 102 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFLLWEPG-EAFDLI 102 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGGGCCCS-SCEEEE
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------CCCcEEeCChhhcCcc-CCCCEE
Confidence 45699999999999999998763 34899999999999755 2478899998877543 689999
Q ss_pred Eccchhhc----------CChhh-----------------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 235 WVQWCIGH----------LTDDD-----------------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 235 ~~~~~l~~----------~~~~d-----------------~~~~l~~~~r~LkpGG~lii~e 269 (280)
+++-.+.. +.++. ...+++.+.++|+|||.+++.-
T Consensus 103 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~ 164 (421)
T 2ih2_A 103 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 164 (421)
T ss_dssp EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99722211 22211 2367999999999999988863
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.1e-10 Score=98.73 Aligned_cols=77 Identities=13% Similarity=0.057 Sum_probs=65.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+ .+|+++|+++.|++.+++++.. ..+++++++|+.++++++.+||.|
T Consensus 48 ~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~--------~~~v~vi~gD~l~~~~~~~~fD~I 118 (295)
T 3gru_A 48 LTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKEL--------YNNIEIIWGDALKVDLNKLDFNKV 118 (295)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHH--------CSSEEEEESCTTTSCGGGSCCSEE
T ss_pred CCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhcc--------CCCeEEEECchhhCCcccCCccEE
Confidence 4567799999999999999999874 4699999999999999998753 357999999999887666689999
Q ss_pred Eccchh
Q 023562 235 WVQWCI 240 (280)
Q Consensus 235 ~~~~~l 240 (280)
+++..+
T Consensus 119 v~NlPy 124 (295)
T 3gru_A 119 VANLPY 124 (295)
T ss_dssp EEECCG
T ss_pred EEeCcc
Confidence 988554
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-09 Score=95.66 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=68.7
Q ss_pred CCCCccEEEeec------CccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeE-EEccCCCCC
Q 023562 155 NNQHLVALDCGS------GIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF-FCVPLQDFT 225 (280)
Q Consensus 155 ~~~~~~VLDlGc------G~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~-~~~d~~~~~ 225 (280)
..++.+|||+|| |+|. ..+++... ..|+++|+|+. + .++++ +++|+.+++
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v-----------~~v~~~i~gD~~~~~ 119 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V-----------SDADSTLIGDCATVH 119 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B-----------CSSSEEEESCGGGCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C-----------CCCEEEEECccccCC
Confidence 556789999999 5576 33444433 37999999987 1 14778 999998876
Q ss_pred CCCCcEEEEEccchhh--------cCC-hhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 226 PETGRYDVIWVQWCIG--------HLT-DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~--------~~~-~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++ ++||+|+++...+ +.. ...+..+++.+.++|||||.|++....
T Consensus 120 ~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 120 TA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp CS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred cc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 54 6899999874321 111 123468999999999999999997543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-09 Score=93.43 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=69.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC-CcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~fDl 233 (280)
..++ +|||+|||+|.++..+++.+. +|+++|+++.|++.+++++.. .+++++++|+.++++++ ..+|.
T Consensus 45 ~~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~---------~~v~vi~~D~l~~~~~~~~~~~~ 113 (271)
T 3fut_A 45 PFTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG---------LPVRLVFQDALLYPWEEVPQGSL 113 (271)
T ss_dssp CCCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT---------SSEEEEESCGGGSCGGGSCTTEE
T ss_pred CCCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC---------CCEEEEECChhhCChhhccCccE
Confidence 4456 999999999999999998874 699999999999999998763 46899999998887543 26899
Q ss_pred EEccchhhcCChhhHHHHHHH
Q 023562 234 IWVQWCIGHLTDDDFVSFFKR 254 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~ 254 (280)
|+++... +++.+-+..++..
T Consensus 114 iv~NlPy-~iss~il~~ll~~ 133 (271)
T 3fut_A 114 LVANLPY-HIATPLVTRLLKT 133 (271)
T ss_dssp EEEEECS-SCCHHHHHHHHHH
T ss_pred EEecCcc-cccHHHHHHHhcC
Confidence 8888654 4454444455544
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.94 E-value=4.2e-09 Score=93.53 Aligned_cols=107 Identities=10% Similarity=-0.039 Sum_probs=77.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC---C
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---G 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~ 229 (280)
..++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...++ .++.++++|+.++.... .
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 173 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSPSDPRYH 173 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCTTCGGGT
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCChHhcCccccccC
Confidence 4567899999999999999998763 23799999999999999999887543 46899999988765332 4
Q ss_pred cEEEEEcc------chhhcCCh---------hh-------HHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQ------WCIGHLTD---------DD-------FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~------~~l~~~~~---------~d-------~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||.|++. .++..-++ .+ ...+++.+.++|+ ||+++.+
T Consensus 174 ~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYs 233 (309)
T 2b9e_A 174 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYS 233 (309)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEE
T ss_pred CCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEE
Confidence 79999962 22322111 11 1356888888887 8987764
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-09 Score=93.08 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=61.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC----CCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~ 230 (280)
..++.+|||+|||+|.++..+++++ .+|+++|+++.|++.+++++.. ..+++++++|+.+++++ .++
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~~~ 97 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--------QKNITIYQNDALQFDFSSVKTDKP 97 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--------CTTEEEEESCTTTCCGGGSCCSSC
T ss_pred CCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--------CCCcEEEEcchHhCCHHHhccCCC
Confidence 4567799999999999999999876 4799999999999999999865 35799999999988643 257
Q ss_pred EEEEEccch
Q 023562 231 YDVIWVQWC 239 (280)
Q Consensus 231 fDlV~~~~~ 239 (280)
|| |+++.-
T Consensus 98 ~~-vv~NlP 105 (255)
T 3tqs_A 98 LR-VVGNLP 105 (255)
T ss_dssp EE-EEEECC
T ss_pred eE-EEecCC
Confidence 88 666643
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.5e-10 Score=102.17 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=80.8
Q ss_pred CCccEEEeecCccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc-eeEEEccCCCCC--CCCCcE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCVPLQDFT--PETGRY 231 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~--~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~--~~~~~f 231 (280)
++.+|||++||+|.++..++.+ +...|+++|+++.+++.++++++.+++ ..+ ++++++|+.++. ...++|
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl-----~~~~v~v~~~Da~~~l~~~~~~~f 126 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI-----PEDRYEIHGMEANFFLRKEWGFGF 126 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC-----CGGGEEEECSCHHHHHHSCCSSCE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCceEEEEeCCHHHHHHHhhCCCC
Confidence 4579999999999999999886 335799999999999999999988765 334 889999975542 113589
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|++.- .. ....++..+.+.|+|||+++++-
T Consensus 127 D~V~lDP-~g-----~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 127 DYVDLDP-FG-----TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEEEECC-SS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEECC-Cc-----CHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999865 11 12368999999999999888863
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.2e-10 Score=102.09 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=78.6
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcC---------------CCCCCCCCcceeEEEcc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE---------------NHMAPDMHKATNFFCVP 220 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~---------------~~~~~~~~~~i~~~~~d 220 (280)
++.+|||+|||+|..+..++.+. ..+|+++|+++.+++.+++++..+ ++ .++++.++|
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl------~~i~v~~~D 120 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE------KTIVINHDD 120 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS------SEEEEEESC
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC------CceEEEcCc
Confidence 35689999999999999999873 347999999999999999998765 32 238899999
Q ss_pred CCCCCC-CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 221 LQDFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 221 ~~~~~~-~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+.++.. ..++||+|++.- .. ....++..+.+.|+|||+++++
T Consensus 121 a~~~~~~~~~~fD~I~lDP-~~-----~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 121 ANRLMAERHRYFHFIDLDP-FG-----SPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp HHHHHHHSTTCEEEEEECC-SS-----CCHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHhccCCCCEEEeCC-CC-----CHHHHHHHHHHhcCCCCEEEEE
Confidence 866521 125899999542 21 1247899999999999988886
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.5e-10 Score=102.87 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=71.1
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCC-------
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PET------- 228 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~------- 228 (280)
+.+|||+|||+|.++..+++ ...+|+++|+|+.+++.|++++..+++ .+++|+++|+.++. ...
T Consensus 214 ~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~------~~v~~~~~d~~~~~~~~~~~~~~~~l 286 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHI------DNVQIIRMAAEEFTQAMNGVREFNRL 286 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTC------CSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred CCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEECCHHHHHHHHhhccccccc
Confidence 46899999999999998775 455799999999999999999877543 37899999987642 111
Q ss_pred -------CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 229 -------GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 -------~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.+||+|++.-.-. .+..++.+.|+++|.+++..
T Consensus 287 ~~~~~~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 287 QGIDLKSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp GGSCGGGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEE
T ss_pred cccccccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEE
Confidence 3799998753211 12334555566777777653
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.1e-10 Score=96.02 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=76.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCH-------HHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--C
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS-------HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P 226 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~-------~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~ 226 (280)
.++.+|||+|||+|..+..++..+. +|+++|+|+ .+++.|+++...+++ ..+++++++|+.++. .
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~-----~~ri~~~~~d~~~~l~~~ 155 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDT-----AARINLHFGNAAEQMPAL 155 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHH-----HTTEEEEESCHHHHHHHH
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCC-----ccCeEEEECCHHHHHHhh
Confidence 3457999999999999999988765 699999999 999999887654322 234899999987752 2
Q ss_pred CC--CcEEEEEccchhhcCC------------------hhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 227 ET--GRYDVIWVQWCIGHLT------------------DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 227 ~~--~~fDlV~~~~~l~~~~------------------~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++ ++||+|++.-.+.+.. +.+...+++.+.++.+. .+++..+-
T Consensus 156 ~~~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p~ 218 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRPR 218 (258)
T ss_dssp HHHHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEET
T ss_pred hccCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcCC
Confidence 22 5899999975544421 12345677777777643 56665443
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-09 Score=93.64 Aligned_cols=105 Identities=12% Similarity=-0.003 Sum_probs=68.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..++++ +...+.++|++..+... . ........++..+..+++...+.+++||+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~-----p---i~~~~~g~~ii~~~~~~dv~~l~~~~~Dl 143 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEK-----P---MNVQSLGWNIITFKDKTDIHRLEPVKCDT 143 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCC-----C---CCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccc-----c---cccCcCCCCeEEEeccceehhcCCCCccE
Confidence 456779999999999999977765 34478889987443100 0 00011123555666666555555679999
Q ss_pred EEccchhhcCCh---hhH--HHHHHHHHHcCCCC-cEEEEE
Q 023562 234 IWVQWCIGHLTD---DDF--VSFFKRAKVGLKPG-GFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~---~d~--~~~l~~~~r~LkpG-G~lii~ 268 (280)
|+|..+.+ -.. +.. ..+++.+.++|+|| |.|+++
T Consensus 144 VlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 144 LLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp EEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 99986554 111 111 23578889999999 999985
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6e-09 Score=100.33 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=76.2
Q ss_pred CCccEEEeecCccHHHHHHH---HhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcE
Q 023562 157 QHLVALDCGSGIGRITKNLL---IRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~---~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 231 (280)
+...|||+|||+|.++...+ +++.. +|.+||-|+ |...+++....+++ ..+|+++.+|++++.++ +++
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~-----~dkVtVI~gd~eev~LP-EKV 429 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW-----GSQVTVVSSDMREWVAP-EKA 429 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT-----GGGEEEEESCTTTCCCS-SCE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC-----CCeEEEEeCcceeccCC-ccc
Confidence 34579999999998854443 33333 689999997 66678777777665 67899999999999876 799
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
|+|++-+.=..+-.+-...++....+.|||||+++
T Consensus 430 DIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 430 DIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred CEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 99998633111111234468888899999999874
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-08 Score=87.23 Aligned_cols=113 Identities=18% Similarity=0.247 Sum_probs=82.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD 232 (280)
..++.+||-+|.|.|..++.+++.. ..+|+.||+++.+++.+++.+...+. ......+++++.+|...+- ...++||
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~-~~~~dpRv~v~~~Dg~~~l~~~~~~yD 159 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNA-GSYDDPRFKLVIDDGVNFVNQTSQTFD 159 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccc-cccCCCcEEEEechHHHHHhhccccCC
Confidence 3467899999999999999998653 35899999999999999998743110 0011467999999988874 3457999
Q ss_pred EEEccchhhcCChhhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++-..=..-+...+ ..|++.++++|+|||+++.-
T Consensus 160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 9996522100010111 47999999999999999874
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=8.3e-09 Score=88.81 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=58.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC--CcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--GRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~fD 232 (280)
..++.+|||+|||+|.++..+++++..+|+++|+|+.|++.++++ . ..+++++++|+..+++++ +.|
T Consensus 29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~---------~~~v~~i~~D~~~~~~~~~~~~~- 97 (249)
T 3ftd_A 29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G---------DERLEVINEDASKFPFCSLGKEL- 97 (249)
T ss_dssp CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C---------CTTEEEECSCTTTCCGGGSCSSE-
T ss_pred CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c---------CCCeEEEEcchhhCChhHccCCc-
Confidence 446779999999999999999877545899999999999999887 2 256899999999887542 234
Q ss_pred EEEccch
Q 023562 233 VIWVQWC 239 (280)
Q Consensus 233 lV~~~~~ 239 (280)
.|+++..
T Consensus 98 ~vv~NlP 104 (249)
T 3ftd_A 98 KVVGNLP 104 (249)
T ss_dssp EEEEECC
T ss_pred EEEEECc
Confidence 5555543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.9e-08 Score=97.43 Aligned_cols=109 Identities=12% Similarity=0.032 Sum_probs=80.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-------------------------------------------CcEEEEeCCHH
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-------------------------------------------NEVDLLEPVSH 191 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-------------------------------------------~~v~~vD~S~~ 191 (280)
..++..|||.+||+|.+++..+.... ..|+|+|+++.
T Consensus 188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~ 267 (703)
T 3v97_A 188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR 267 (703)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence 34567899999999999887765421 26999999999
Q ss_pred HHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC--CCcEEEEEccchhh--cCChhhHHHHHHHHHHcC---CCCcE
Q 023562 192 FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIG--HLTDDDFVSFFKRAKVGL---KPGGF 264 (280)
Q Consensus 192 ~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fDlV~~~~~l~--~~~~~d~~~~l~~~~r~L---kpGG~ 264 (280)
|++.|+.++...|+ ...++|.++|+.++..+ .++||+|+++--+. .-..+++..+++.+.+.| .|||.
T Consensus 268 av~~A~~N~~~agv-----~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~ 342 (703)
T 3v97_A 268 VIQRARTNARLAGI-----GELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWN 342 (703)
T ss_dssp HHHHHHHHHHHTTC-----GGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHHcCC-----CCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCe
Confidence 99999999988765 45689999999887433 23899999994332 222345556666555554 57998
Q ss_pred EEEE
Q 023562 265 FVLK 268 (280)
Q Consensus 265 lii~ 268 (280)
+++.
T Consensus 343 ~~il 346 (703)
T 3v97_A 343 LSLF 346 (703)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=6.4e-09 Score=91.95 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=62.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--C---CC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P---ET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~---~~ 228 (280)
..++.+|||+|||+|..+..++++.. .+|+++|+|+.|++.|++++... +.+++++++|+.+++ . ..
T Consensus 24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~-------g~~v~~v~~d~~~l~~~l~~~g~ 96 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYREADFLLKTLGI 96 (301)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGGGHHHHHHHTTC
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-------CCcEEEEECCHHHHHHHHHhcCC
Confidence 44677999999999999999998853 47999999999999999998763 247999999988764 1 11
Q ss_pred CcEEEEEcc
Q 023562 229 GRYDVIWVQ 237 (280)
Q Consensus 229 ~~fDlV~~~ 237 (280)
.+||.|++.
T Consensus 97 ~~~D~Vl~D 105 (301)
T 1m6y_A 97 EKVDGILMD 105 (301)
T ss_dssp SCEEEEEEE
T ss_pred CCCCEEEEc
Confidence 579999875
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-08 Score=95.17 Aligned_cols=114 Identities=11% Similarity=-0.007 Sum_probs=80.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-------------------CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCccee
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-------------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-------------------~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~ 215 (280)
+.++.+|||.+||+|.+...+++.. ...++|+|+++.+++.|+.++...+.... .....+
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~-~~~~~~ 245 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN-LDHGGA 245 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB-GGGTBS
T ss_pred cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc-ccccCC
Confidence 4456799999999999988776541 12699999999999999988765433100 001267
Q ss_pred EEEccCCCCC-CCCCcEEEEEccchhhcCCh------------hhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 216 FFCVPLQDFT-PETGRYDVIWVQWCIGHLTD------------DDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 216 ~~~~d~~~~~-~~~~~fDlV~~~~~l~~~~~------------~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+.++|....+ ....+||+|+++-.+....+ .....|+..+.+.|+|||++.+.-
T Consensus 246 I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 246 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 8888865532 22368999999855443221 112379999999999999988863
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-08 Score=88.02 Aligned_cols=74 Identities=8% Similarity=0.063 Sum_probs=57.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC----
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---- 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~--v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---- 228 (280)
..++.+|||+|||+|.++. +. ++ .+ |+++|+++.|++.+++++.. ..+++++++|+.++++++
T Consensus 19 ~~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~ 87 (252)
T 1qyr_A 19 PQKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFL--------GPKLTIYQQDAMTFNFGELAEK 87 (252)
T ss_dssp CCTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTT--------GGGEEEECSCGGGCCHHHHHHH
T ss_pred CCCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhcc--------CCceEEEECchhhCCHHHhhcc
Confidence 4466799999999999999 64 54 45 99999999999999988754 247999999998876431
Q ss_pred -CcEEEEEccch
Q 023562 229 -GRYDVIWVQWC 239 (280)
Q Consensus 229 -~~fDlV~~~~~ 239 (280)
+..|.|+++..
T Consensus 88 ~~~~~~vvsNlP 99 (252)
T 1qyr_A 88 MGQPLRVFGNLP 99 (252)
T ss_dssp HTSCEEEEEECC
T ss_pred cCCceEEEECCC
Confidence 23467777644
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.69 E-value=9.1e-08 Score=79.51 Aligned_cols=103 Identities=16% Similarity=0.042 Sum_probs=73.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC------------
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------------ 224 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~------------ 224 (280)
+..+|||+||| +.+..+++....+|+.+|.+++..+.|+++++..++. ...+++++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~---~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPA---EGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCC---TTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCCceEEEEeCchhhhcccccccchhh
Confidence 34689999985 6777666532248999999999999999999875430 024789999986542
Q ss_pred ---C--------C-CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 225 ---T--------P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 225 ---~--------~-~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+ . ..++||+|++-.-. ....+..+.+.|+|||+| +.+|+.
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~I-v~DNv~ 156 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTL-LFDDYS 156 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEE-EETTGG
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEE-EEeCCc
Confidence 1 1 23689999987532 125566677999999998 667754
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-08 Score=87.26 Aligned_cols=63 Identities=11% Similarity=0.183 Sum_probs=53.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCc---EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~---v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 227 (280)
..++.+|||+|||+|.++..+++++..+ |+++|+|+.|++.++++. . .+++++++|+.+++++
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~---------~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G---------ELLELHAGDALTFDFG 105 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G---------GGEEEEESCGGGCCGG
T ss_pred CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C---------CCcEEEECChhcCChh
Confidence 4467799999999999999999876532 999999999999999884 2 4689999999887643
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.1e-09 Score=89.99 Aligned_cols=106 Identities=14% Similarity=0.019 Sum_probs=67.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||||||+|.++..++++ +...|.++|++..+...+.. ......++.++..++....+...++|+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~--------~~~~g~~ii~~~~~~dv~~l~~~~~Dv 159 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM--------RTTLGWNLIRFKDKTDVFNMEVIPGDT 159 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--------CCBTTGGGEEEECSCCGGGSCCCCCSE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc--------cccCCCceEEeeCCcchhhcCCCCcCE
Confidence 456779999999999999977754 34478999998654221110 011123444444433323344578999
Q ss_pred EEccchhhcCCh---hhH--HHHHHHHHHcCCCC--cEEEEEe
Q 023562 234 IWVQWCIGHLTD---DDF--VSFFKRAKVGLKPG--GFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~---~d~--~~~l~~~~r~LkpG--G~lii~e 269 (280)
|+|..+.. -.. +.. ..+++-+.++|+|| |.|++.=
T Consensus 160 VLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 160 LLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp EEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred EEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 99986654 221 111 24577888999999 9999863
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-07 Score=83.13 Aligned_cols=131 Identities=17% Similarity=0.188 Sum_probs=80.7
Q ss_pred HHHHHHHhccCCCcc-CCCCccEEEeecCccHHHHHHHH--------hc-------CC-cEEEEeCCHHHHHHHHHHcCc
Q 023562 140 AFLQMLLSDRFPNAR-NNQHLVALDCGSGIGRITKNLLI--------RY-------FN-EVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~-~~~~~~VLDlGcG~G~~s~~l~~--------~~-------~~-~v~~vD~S~~~l~~A~~~~~~ 202 (280)
..+...+........ ...+.+|+|+|||+|..+..++. ++ +. +|...|+....-...=+.+..
T Consensus 34 ~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~ 113 (374)
T 3b5i_A 34 HLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPP 113 (374)
T ss_dssp HHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCC
T ss_pred HHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhh
Confidence 455555544322110 12357999999999999887632 21 22 788888777665544444332
Q ss_pred CCC-----C-CCCCCcceeEEEccCCCC---CCCCCcEEEEEccchhhcCCh----------------------------
Q 023562 203 ENH-----M-APDMHKATNFFCVPLQDF---TPETGRYDVIWVQWCIGHLTD---------------------------- 245 (280)
Q Consensus 203 ~~~-----~-~~~~~~~i~~~~~d~~~~---~~~~~~fDlV~~~~~l~~~~~---------------------------- 245 (280)
..- . ......+..|..+.-..+ .+++++||+|+++.+||++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~ 193 (374)
T 3b5i_A 114 LVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTT 193 (374)
T ss_dssp BCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHH
T ss_pred hhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHH
Confidence 100 0 000001123444433332 356689999999999999872
Q ss_pred --------hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 246 --------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 246 --------~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.|+..+|+..++.|+|||.++++-.
T Consensus 194 ~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 194 TAYKRQFQADLAEFLRARAAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 1677789999999999999998743
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-07 Score=85.53 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=74.5
Q ss_pred CccEEEeecCccHHHHHHHHh-----------------cCC-cEEEEeCC-----------HHHHHHHHHHcCcCCCCCC
Q 023562 158 HLVALDCGSGIGRITKNLLIR-----------------YFN-EVDLLEPV-----------SHFLDAARESLAPENHMAP 208 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~-----------------~~~-~v~~vD~S-----------~~~l~~A~~~~~~~~~~~~ 208 (280)
..+|+|+||++|..+..++.. .+. +|...|+. +.+.+.+++....
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~------ 126 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR------ 126 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC------
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC------
Confidence 578999999999999877654 111 68888877 6666555443221
Q ss_pred CCCcceeEEEccCCCC---CCCCCcEEEEEccchhhcCChh-------------------------------------hH
Q 023562 209 DMHKATNFFCVPLQDF---TPETGRYDVIWVQWCIGHLTDD-------------------------------------DF 248 (280)
Q Consensus 209 ~~~~~i~~~~~d~~~~---~~~~~~fDlV~~~~~l~~~~~~-------------------------------------d~ 248 (280)
..+.-|..+....+ .++++++|+|+++.+||++.+. |+
T Consensus 127 --~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~ 204 (384)
T 2efj_A 127 --KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDF 204 (384)
T ss_dssp --CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHH
T ss_pred --CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHH
Confidence 11235566655554 3567899999999999997641 23
Q ss_pred HHHHHHHHHcCCCCcEEEEEecc
Q 023562 249 VSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 249 ~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..||+..++.|+|||.+++.-..
T Consensus 205 ~~FL~~Ra~eL~pGG~mvl~~~g 227 (384)
T 2efj_A 205 TTFLRIHSEELISRGRMLLTFIC 227 (384)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhccCCeEEEEEec
Confidence 34578889999999999987444
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-08 Score=97.07 Aligned_cols=102 Identities=14% Similarity=0.119 Sum_probs=73.4
Q ss_pred CccEEEeecCccHHHHHHHHh----c----------CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC
Q 023562 158 HLVALDCGSGIGRITKNLLIR----Y----------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~----~----------~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~ 223 (280)
...|||+|||+|.++...+.. + ..+|.+||.|+.++...+.+.. +++ ...++++.+|+++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~-----~d~VtVI~gd~ee 483 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW-----KRRVTIIESDMRS 483 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT-----TTCSEEEESCGGG
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC-----CCeEEEEeCchhh
Confidence 457999999999997533221 1 1189999999987766665543 333 4669999999999
Q ss_pred CCCC-----CCcEEEEEccchhhcCCh-hhHHHHHHHHHHcCCCCcEEE
Q 023562 224 FTPE-----TGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 224 ~~~~-----~~~fDlV~~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~li 266 (280)
+..+ ++++|+|++-+. .++.+ +-....+..+.+.|||||+++
T Consensus 484 v~lp~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 484 LPGIAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cccccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 8752 479999998754 33322 223567888889999999865
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-08 Score=94.00 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=60.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcC--CCCCCCCCcceeEEEccCCCC-CC-CCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQDF-TP-ETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~--~~~~~~~~~~i~~~~~d~~~~-~~-~~~~fD 232 (280)
++.+|||+|||+|..+..+++.+ .+|+++|+|+.|++.|++++... ++ .+++++++|+.++ +. .+++||
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl------~~i~~i~~Da~~~L~~~~~~~fD 165 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEG------KDVNILTGDFKEYLPLIKTFHPD 165 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTT------CEEEEEESCGGGSHHHHHHHCCS
T ss_pred CCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCC------CcEEEEECcHHHhhhhccCCCce
Confidence 36799999999999999887665 47999999999999999998753 22 4699999999875 21 125899
Q ss_pred EEEcc
Q 023562 233 VIWVQ 237 (280)
Q Consensus 233 lV~~~ 237 (280)
+|++.
T Consensus 166 vV~lD 170 (410)
T 3ll7_A 166 YIYVD 170 (410)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99985
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-07 Score=82.88 Aligned_cols=105 Identities=12% Similarity=-0.049 Sum_probs=65.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+||++|.++..++++ +...|+++|++..+.... ........++.....++..+.+..+++|+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P--------~~~~~~~~~iv~~~~~~di~~l~~~~~Dl 150 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKP--------IHMQTLGWNIVKFKDKSNVFTMPTEPSDT 150 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCC--------CCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccc--------ccccccCCceEEeecCceeeecCCCCcCE
Confidence 446789999999999999988865 444789999875431100 00000122333333333323334578999
Q ss_pred EEccchhhcCCh---hhH--HHHHHHHHHcCCCC-cEEEEE
Q 023562 234 IWVQWCIGHLTD---DDF--VSFFKRAKVGLKPG-GFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~---~d~--~~~l~~~~r~LkpG-G~lii~ 268 (280)
|+|..+.. -.. +.. ..++.-+.++|+|| |.|++.
T Consensus 151 VlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 151 LLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp EEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred EeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99875544 221 111 34578888999999 999987
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.49 E-value=4.7e-08 Score=84.47 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=58.6
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCC--CCCCC-CCcceeEEEccCCCC-CCCCCcEEEE
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN--HMAPD-MHKATNFFCVPLQDF-TPETGRYDVI 234 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~--~~~~~-~~~~i~~~~~d~~~~-~~~~~~fDlV 234 (280)
.+|||+|||+|..+..++.++. +|+++|+++.+.+.+++++.... ..... ...+++++++|..++ +....+||+|
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV 168 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence 7999999999999999998876 59999999988666665543210 00000 024689999998764 2212479999
Q ss_pred Eccchhhc
Q 023562 235 WVQWCIGH 242 (280)
Q Consensus 235 ~~~~~l~~ 242 (280)
++.-.+.+
T Consensus 169 ~lDP~y~~ 176 (258)
T 2oyr_A 169 YLDPMFPH 176 (258)
T ss_dssp EECCCCCC
T ss_pred EEcCCCCC
Confidence 99765544
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-07 Score=88.38 Aligned_cols=105 Identities=11% Similarity=-0.128 Sum_probs=73.5
Q ss_pred ccEEEeecCccHHHHHHHHhc----------------CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCC
Q 023562 159 LVALDCGSGIGRITKNLLIRY----------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~----------------~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~ 222 (280)
.+|||.+||+|.+...+++.. ...++|+|+++.++..|+.++...++ ..++.+.++|..
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi-----~~~i~i~~gDtL 320 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI-----DFNFGKKNADSF 320 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC-----CCBCCSSSCCTT
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC-----Ccccceeccchh
Confidence 499999999999987765321 22699999999999999988765443 223444667654
Q ss_pred CCC-CCCCcEEEEEccchhhc-------------------------CChh--hHHHHHHHHHHcCCCCcEEEEE
Q 023562 223 DFT-PETGRYDVIWVQWCIGH-------------------------LTDD--DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 223 ~~~-~~~~~fDlV~~~~~l~~-------------------------~~~~--d~~~~l~~~~r~LkpGG~lii~ 268 (280)
..+ ....+||+|+++-.+.. +++. .--.|++.+.+.|+|||++.+.
T Consensus 321 ~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiV 394 (544)
T 3khk_A 321 LDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALL 394 (544)
T ss_dssp TSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEE
Confidence 433 33468999999833321 1110 1126999999999999998776
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.1e-07 Score=83.03 Aligned_cols=112 Identities=12% Similarity=0.049 Sum_probs=79.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCC--CCCCCCcceeEEEccCCCCC----CCCCc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH--MAPDMHKATNFFCVPLQDFT----PETGR 230 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~--~~~~~~~~i~~~~~d~~~~~----~~~~~ 230 (280)
++.+||=+|.|.|..++.+++....+|+.||+++.+++.+++.+....- .......+++++..|...+- ...++
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~ 284 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 284 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence 4679999999999999999977666999999999999999998764211 11111245788888875542 12368
Q ss_pred EEEEEccchh-------hcCChhh-HHHHHHHHHHcCCCCcEEEEE
Q 023562 231 YDVIWVQWCI-------GHLTDDD-FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 231 fDlV~~~~~l-------~~~~~~d-~~~~l~~~~r~LkpGG~lii~ 268 (280)
||+|+.-..- ....... ...+++.++++|+|||+++..
T Consensus 285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 9999965211 1111111 267999999999999999874
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=83.54 Aligned_cols=108 Identities=16% Similarity=0.067 Sum_probs=78.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhc----CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--C-CCC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--T-PET 228 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~----~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~-~~~ 228 (280)
.++.+|+|.+||+|.+...+++.. ...++|+|+++.++..|+.++...+.. ..++.+.++|.... + ...
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~----~~~~~I~~gDtL~~d~p~~~~ 295 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP----IENQFLHNADTLDEDWPTQEP 295 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEESCTTTSCSCCSSC
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC----cCccceEecceeccccccccc
Confidence 356799999999999988887662 237999999999999999887554331 13577889887654 3 234
Q ss_pred CcEEEEEccchhhc-------------------CCh---hhHHHHHHHHHHcCC-CCcEEEEE
Q 023562 229 GRYDVIWVQWCIGH-------------------LTD---DDFVSFFKRAKVGLK-PGGFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~~~~l~~-------------------~~~---~d~~~~l~~~~r~Lk-pGG~lii~ 268 (280)
.+||+|+++--+.. +++ .+ -.|+..+.+.|+ |||++.+.
T Consensus 296 ~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~V 357 (542)
T 3lkd_A 296 TNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIV 357 (542)
T ss_dssp CCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEE
T ss_pred ccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEE
Confidence 78999998722210 110 11 258999999999 99998776
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.42 E-value=1e-06 Score=86.41 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=74.2
Q ss_pred CCccEEEeecCccHHHHHHHHhcC----CcEEEEeCCHHHHHHH--HHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAA--RESLAPENHMAPDMHKATNFFCVPLQDFT-PETG 229 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~----~~v~~vD~S~~~l~~A--~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~ 229 (280)
++.+|||.|||+|.+...++.... .+++|+|+++.+++.| +.++..+++.. +. ....+...|+.+.. ....
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Llh-Gi-~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVS-SN-NAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCB-TT-BCCEEECCCGGGCCGGGGT
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhc-CC-CcceEEecchhcccccccC
Confidence 467999999999999998887653 2799999999999999 55554322210 00 12344555555432 2236
Q ss_pred cEEEEEccchhhc--CCh-------------------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGH--LTD-------------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~--~~~-------------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||+|+++--+.. -.+ +-...|+..+.+.|+|||++.+.
T Consensus 399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfI 464 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAI 464 (878)
T ss_dssp TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEE
Confidence 8999999843311 111 01345889999999999998886
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=8.8e-07 Score=79.95 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=82.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD 232 (280)
+.++.+|||++||+|.-+..+++.+.. .|+++|+|+.-++..++++...+........++.+...|...+. ...++||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 667889999999999999999887554 79999999999999988876544322222356788888877653 2346899
Q ss_pred EEEc----cc---hhhc--------CChhh-------HHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWV----QW---CIGH--------LTDDD-------FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~----~~---~l~~--------~~~~d-------~~~~l~~~~r~LkpGG~lii~ 268 (280)
.|++ +. .+.. ....+ ...+|..+.+.|||||.++.+
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYs 283 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYS 283 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 9983 32 1111 11111 246889999999999998765
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.7e-07 Score=72.04 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=60.7
Q ss_pred CCccEEEeecCcc-HHHHHHHH-hcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC-CcEEE
Q 023562 157 QHLVALDCGSGIG-RITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G-~~s~~l~~-~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~fDl 233 (280)
.+.+|||+|||.| ..+..|++ .++ .|+++|+|+..++ +++.|+.+...+. ..||+
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~---------------------~v~dDiF~P~~~~Y~~~DL 92 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG---------------------IVRDDITSPRMEIYRGAAL 92 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT---------------------EECCCSSSCCHHHHTTEEE
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc---------------------eEEccCCCCcccccCCcCE
Confidence 4579999999999 69999987 566 4999999876553 6778887643221 38999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|++... +.+++..+.++++.. |.-++|.
T Consensus 93 IYsirP-----P~El~~~i~~lA~~v--~adliI~ 120 (153)
T 2k4m_A 93 IYSIRP-----PAEIHSSLMRVADAV--GARLIIK 120 (153)
T ss_dssp EEEESC-----CTTTHHHHHHHHHHH--TCEEEEE
T ss_pred EEEcCC-----CHHHHHHHHHHHHHc--CCCEEEE
Confidence 988655 457878888877754 4445444
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.38 E-value=3.8e-07 Score=82.24 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=78.1
Q ss_pred CCccEEEeecCccHHHHHHHHh------------c---CC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIR------------Y---FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~------------~---~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
...+|+|+||++|..+..+... + .. +|...|........+-+.+.... ...+.-|..+
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-----~~~~~~f~~g 125 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-----DVDGVCFING 125 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-----SCTTCEEEEE
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-----ccCCCEEEEe
Confidence 4578999999999776654332 1 12 79999999988888877765421 0112345555
Q ss_pred cCCCC---CCCCCcEEEEEccchhhcCCh-------------------------------hhHHHHHHHHHHcCCCCcEE
Q 023562 220 PLQDF---TPETGRYDVIWVQWCIGHLTD-------------------------------DDFVSFFKRAKVGLKPGGFF 265 (280)
Q Consensus 220 d~~~~---~~~~~~fDlV~~~~~l~~~~~-------------------------------~d~~~~l~~~~r~LkpGG~l 265 (280)
....+ .++++++|+|+++.++|++.+ .|+..||+..++.|+|||.+
T Consensus 126 vpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~m 205 (359)
T 1m6e_X 126 VPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRM 205 (359)
T ss_dssp EESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEE
T ss_pred cchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 44443 466789999999999999764 15667899999999999999
Q ss_pred EEEe
Q 023562 266 VLKE 269 (280)
Q Consensus 266 ii~e 269 (280)
++.-
T Consensus 206 vl~~ 209 (359)
T 1m6e_X 206 VLTI 209 (359)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9873
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.8e-07 Score=77.33 Aligned_cols=107 Identities=9% Similarity=0.040 Sum_probs=77.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhc------CCcEEEEeCCHH--------------------------HHHHHHHHcCcC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSH--------------------------FLDAARESLAPE 203 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~------~~~v~~vD~S~~--------------------------~l~~A~~~~~~~ 203 (280)
..+++|||+|+..|..+..++... ..+|+++|..+. .++.++++++..
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 356799999999999988775431 237999996421 467788888775
Q ss_pred CCCCCCCCcceeEEEccCCCC-C-CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 204 NHMAPDMHKATNFFCVPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 204 ~~~~~~~~~~i~~~~~d~~~~-~-~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++. ..+++++.+++.+. + .++++||+|++-.-. | ......++.+...|+|||+|++.+.
T Consensus 185 gl~----~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~-y---~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 185 DLL----DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL-Y---ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp TCC----STTEEEEESCHHHHSTTCCCCCEEEEEECCCS-H---HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCC----cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc-c---ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 441 26799999987653 2 234689999986532 1 1345789999999999998887664
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=74.58 Aligned_cols=105 Identities=11% Similarity=-0.053 Sum_probs=61.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc-eeEEEc-cCCCCCCCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCV-PLQDFTPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~-i~~~~~-d~~~~~~~~~~f 231 (280)
.+++.+|||+||++|.++...++. +...|.|.++.... ....+.....+.+ +.|.++ |+.++. +.++
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~--------~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~ 140 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG--------HEEPMLMQSYGWNIVTMKSGVDVFYKP--SEIS 140 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT--------SCCCCCCCSTTGGGEEEECSCCGGGSC--CCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc--------ccCCCcccCCCceEEEeeccCCccCCC--CCCC
Confidence 667899999999999999977764 12234555543220 0000000000111 234446 887644 3589
Q ss_pred EEEEccchhhcCCh--hh---HHHHHHHHHHcCCCCc-EEEEEec
Q 023562 232 DVIWVQWCIGHLTD--DD---FVSFFKRAKVGLKPGG-FFVLKEN 270 (280)
Q Consensus 232 DlV~~~~~l~~~~~--~d---~~~~l~~~~r~LkpGG-~lii~e~ 270 (280)
|+|+|-..-. -.. -| ...++.-+.++|+||| .|++.=.
T Consensus 141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 141 DTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 9999864322 111 11 1126777789999999 8888633
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.25 E-value=8.3e-07 Score=76.57 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=70.7
Q ss_pred CCccEEEeecCccHHHHHHHHh-------cC------CcEEEEeCCH---HHHH-----------HHHHHcCcCCCC---
Q 023562 157 QHLVALDCGSGIGRITKNLLIR-------YF------NEVDLLEPVS---HFLD-----------AARESLAPENHM--- 206 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~-------~~------~~v~~vD~S~---~~l~-----------~A~~~~~~~~~~--- 206 (280)
++.+|||+|+|+|..+..+++. .+ -+++++|..+ +++. .|++.+......
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988876553 33 2699999776 5555 445543321000
Q ss_pred -----CCCCCcceeEEEccCCCC-CCCC----CcEEEEEcc-chhhcCChhh--HHHHHHHHHHcCCCCcEEEE
Q 023562 207 -----APDMHKATNFFCVPLQDF-TPET----GRYDVIWVQ-WCIGHLTDDD--FVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 207 -----~~~~~~~i~~~~~d~~~~-~~~~----~~fDlV~~~-~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii 267 (280)
......+++++.+|+.+. +..+ .+||+|+.- +.-...+ + ...+++.+.++|+|||+|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p--~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNP--DMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCG--GGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccCh--hhcCHHHHHHHHHHcCCCcEEEE
Confidence 001125678899997663 3211 279999985 3332222 3 25899999999999999875
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.9e-06 Score=72.76 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=66.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCC-cceeEEEc-cCCCCCCCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCV-PLQDFTPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~-~~i~~~~~-d~~~~~~~~~~f 231 (280)
..++.+|||+||++|.++.+++.. +...|.++|+...--+ ........+ ..+.|... |+..+++ .++
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he--------~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~ 161 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHE--------EPQLVQSYGWNIVTMKSGVDVFYRPS--ECC 161 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSC--------CCCCCCBTTGGGEEEECSCCTTSSCC--CCC
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCcc--------CcchhhhcCCcceEEEeccCHhhCCC--CCC
Confidence 457779999999999999966654 4458999998543110 000000111 23677776 7766654 579
Q ss_pred EEEEccchhhcCChh--hH---HHHHHHHHHcCCCC-cEEEEE
Q 023562 232 DVIWVQWCIGHLTDD--DF---VSFFKRAKVGLKPG-GFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~~~--d~---~~~l~~~~r~LkpG-G~lii~ 268 (280)
|+|+|--. .--+.+ |- ..+|+-+.++|++| |-|+|.
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~K 203 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVK 203 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEE
Confidence 99998644 222221 11 23777788999999 888885
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-05 Score=72.21 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=67.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+||++|.++..+++++. .|++||+.+ |-.... . ..+++++..|...+.++..+||+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-l~~~l~----~--------~~~V~~~~~d~~~~~~~~~~~D~v 274 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-MAQSLM----D--------TGQVTWLREDGFKFRPTRSNISWM 274 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-CCHHHH----T--------TTCEEEECSCTTTCCCCSSCEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-cChhhc----c--------CCCeEEEeCccccccCCCCCcCEE
Confidence 45788999999999999999998876 599999764 211111 1 356899999998888776789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+|-.+.. +.....++......+..++.|+.
T Consensus 275 vsDm~~~---p~~~~~l~~~wl~~~~~~~aI~~ 304 (375)
T 4auk_A 275 VCDMVEK---PAKVAALMAQWLVNGWCRETIFN 304 (375)
T ss_dssp EECCSSC---HHHHHHHHHHHHHTTSCSEEEEE
T ss_pred EEcCCCC---hHHhHHHHHHHHhccccceEEEE
Confidence 9976642 22333444444444444455443
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.03 E-value=9.5e-06 Score=70.37 Aligned_cols=72 Identities=17% Similarity=0.064 Sum_probs=59.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 229 (280)
..++..++|++||.|..+..++++. .+|+|+|.++.+++.|++ +.. .++.++++++.++. ...+
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~---------~rv~lv~~~f~~l~~~L~~~g~~ 88 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL---------PGLTVVQGNFRHLKRHLAALGVE 88 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC---------TTEEEEESCGGGHHHHHHHTTCS
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc---------CCEEEEECCcchHHHHHHHcCCC
Confidence 4567899999999999999999883 379999999999999998 643 36899999988763 1225
Q ss_pred cEEEEEcc
Q 023562 230 RYDVIWVQ 237 (280)
Q Consensus 230 ~fDlV~~~ 237 (280)
++|.|++.
T Consensus 89 ~vDgIL~D 96 (285)
T 1wg8_A 89 RVDGILAD 96 (285)
T ss_dssp CEEEEEEE
T ss_pred CcCEEEeC
Confidence 79999864
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.6e-05 Score=64.07 Aligned_cols=103 Identities=14% Similarity=0.032 Sum_probs=66.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCC-cceeEEEc-cCCCCCCCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCV-PLQDFTPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~-~~i~~~~~-d~~~~~~~~~~f 231 (280)
..++.+|||+||++|.++...+.. +...|.++|+-..--+ ........+ ..++|.++ |+..+++ .++
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe--------~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~ 145 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE--------EPVPMSTYGWNIVKLMSGKDVFYLPP--EKC 145 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSC--------CCCCCCCTTTTSEEEECSCCGGGCCC--CCC
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCcc--------CcchhhhcCcCceEEEeccceeecCC--ccc
Confidence 567789999999999999977655 4448999997543221 000001111 45788888 8755553 679
Q ss_pred EEEEccchhhcCCh-hhH---HHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIWVQWCIGHLTD-DDF---VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~~-~d~---~~~l~~~~r~LkpGG~lii~ 268 (280)
|.|+|-..=..-.+ .|- ..+|+-+.++|++ |-|+|.
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~K 185 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK 185 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence 99998744322111 121 3377888899999 788774
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00027 Score=66.96 Aligned_cols=108 Identities=17% Similarity=0.050 Sum_probs=71.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc--------------CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~--------------~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d 220 (280)
+.++.+|+|-+||+|.+.....++. -..+.|+|+++.+...|+-+.--.+. ...++..+|
T Consensus 215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~------~~~~I~~~d 288 (530)
T 3ufb_A 215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL------EYPRIDPEN 288 (530)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC------SCCEEECSC
T ss_pred cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC------ccccccccc
Confidence 4566799999999999987665421 12599999999999999877544332 223556666
Q ss_pred CCCCCC----CCCcEEEEEccchhhc---------CC----h-hhHHHHHHHHHHcCC-------CCcEEEEE
Q 023562 221 LQDFTP----ETGRYDVIWVQWCIGH---------LT----D-DDFVSFFKRAKVGLK-------PGGFFVLK 268 (280)
Q Consensus 221 ~~~~~~----~~~~fDlV~~~~~l~~---------~~----~-~d~~~~l~~~~r~Lk-------pGG~lii~ 268 (280)
....+. ...+||+|+++--+.. ++ . +.--.|+..+.+.|| |||++.+.
T Consensus 289 tL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avV 361 (530)
T 3ufb_A 289 SLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVV 361 (530)
T ss_dssp TTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEE
T ss_pred cccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEE
Confidence 544331 2247999999844321 11 0 112357788888876 79988776
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=1.2e-05 Score=88.45 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=55.3
Q ss_pred CCccEEEeecCccHHHHHHHHhc------CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG 229 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~------~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~ 229 (280)
+..+||++|.|+|..+..+++.. +.+++..|+|+...+.|+++++. ..+.....|..+. ++...
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~---------~di~~~~~d~~~~~~~~~~ 1310 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ---------LHVTQGQWDPANPAPGSLG 1310 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH---------HTEEEECCCSSCCCC----
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh---------cccccccccccccccCCCC
Confidence 46799999999998777665542 22689999999988888777643 1122221233221 11346
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+||+|++..++|-.+ ++...++++.++|||||++++.|..
T Consensus 1311 ~ydlvia~~vl~~t~--~~~~~l~~~~~lL~p~G~l~~~e~~ 1350 (2512)
T 2vz8_A 1311 KADLLVCNCALATLG--DPAVAVGNMAATLKEGGFLLLHTLL 1350 (2512)
T ss_dssp -CCEEEEECC----------------------CCEEEEEEC-
T ss_pred ceeEEEEcccccccc--cHHHHHHHHHHhcCCCcEEEEEecc
Confidence 799999999997555 6778999999999999999998743
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0004 Score=61.97 Aligned_cols=115 Identities=9% Similarity=0.090 Sum_probs=83.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCC-------CC--------CCCcceeEEEcc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHM-------AP--------DMHKATNFFCVP 220 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~-------~~--------~~~~~i~~~~~d 220 (280)
+...|+.+|||.......+...+.. .+.=||. |.+++.-++.+...+.. .. -...+..++.+|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3468999999999999988876443 4555555 88887777665542100 00 012467888889
Q ss_pred CCCCC--------C-CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 221 LQDFT--------P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 221 ~~~~~--------~-~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
+.+.. . ......++++-.++.|++++....+++.+.+.. |+|.+++.|.+..
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 88731 1 234678999999999999999999999999987 7888887787765
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00016 Score=63.42 Aligned_cols=58 Identities=19% Similarity=0.020 Sum_probs=45.8
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCc
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
..++..++... ..++..|||++||+|..+..++..+. +++|+|+++.+++.|++++..
T Consensus 222 ~~l~~~~i~~~-----~~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 222 LELAERLVRMF-----SFVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp HHHHHHHHHHH-----CCTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 34555555432 23567999999999999998877665 699999999999999998764
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00052 Score=62.24 Aligned_cols=101 Identities=19% Similarity=0.166 Sum_probs=70.1
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--------CCCc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------ETGR 230 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~ 230 (280)
.+++|+-||.|.++..+.+.++..+.++|+++.+++..+.++.. ..++++|+.++.. ....
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~-----------~~~~~~DI~~~~~~~~~~~~~~~~~ 71 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPR-----------SLHVQEDVSLLNAEIIKGFFKNDMP 71 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTT-----------SEEECCCGGGCCHHHHHHHHCSCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCC-----------CceEecChhhcCHHHHHhhcccCCC
Confidence 47999999999999999999998889999999999999988743 4567788877642 2357
Q ss_pred EEEEEccch---hhc-----CChh--hHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 231 YDVIWVQWC---IGH-----LTDD--DFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 231 fDlV~~~~~---l~~-----~~~~--d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+|+|+...- +.. ..++ .+-.-+-++.+.++| .+++.|||.
T Consensus 72 ~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~ 121 (376)
T 3g7u_A 72 IDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVP 121 (376)
T ss_dssp CCEEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECT
T ss_pred eeEEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecch
Confidence 999985421 111 1111 111122234445688 467789984
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00031 Score=60.86 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=75.9
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-C---CCCCCcEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F---TPETGRYDV 233 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~---~~~~~~fDl 233 (280)
+..+||+=+|+|.++..+++. .++++.+|.++..++..++++.. ..+++++..|... + .++..+||+
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~--------~~~~~V~~~D~~~~L~~l~~~~~~fdL 162 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF--------NKKVYVNHTDGVSKLNALLPPPEKRGL 162 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT--------TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred CCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc--------CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence 357999999999999999874 47899999999999999999865 3568889888533 2 233357999
Q ss_pred EEccchhhcCChhhHHHHHHHHHH--cCCCCcEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVL 267 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii 267 (280)
|++--.+.. ..++..+++.+.+ .+.|+|++++
T Consensus 163 VfiDPPYe~--k~~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 163 IFIDPSYER--KEEYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp EEECCCCCS--TTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred EEECCCCCC--CcHHHHHHHHHHHhCccCCCeEEEE
Confidence 998766543 2366677777665 4678998877
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00048 Score=61.67 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=55.3
Q ss_pred CccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC---CCcEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYD 232 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD 232 (280)
+.+|+|+-||.|.++..+.+.+ +..|.++|+++.+++..+.++.. ..++++|+.++... ...+|
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----------~~~~~~Di~~~~~~~~~~~~~D 70 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------TQLLAKTIEGITLEEFDRLSFD 70 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------SCEECSCGGGCCHHHHHHHCCS
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----------cccccCCHHHccHhHcCcCCcC
Confidence 3589999999999999999888 45899999999999999999754 34677888776421 11589
Q ss_pred EEEcc
Q 023562 233 VIWVQ 237 (280)
Q Consensus 233 lV~~~ 237 (280)
+|+..
T Consensus 71 ~l~~g 75 (343)
T 1g55_A 71 MILMS 75 (343)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99865
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00074 Score=58.58 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=60.4
Q ss_pred CCCCccEEEeec------CccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC
Q 023562 155 NNQHLVALDCGS------GIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (280)
Q Consensus 155 ~~~~~~VLDlGc------G~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 226 (280)
...+.+|||+|+ -+|.+. +.+.+.. .|+++|+.+-.. .. ..++++|......
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~V--Lr~~~p~g~~VVavDL~~~~s-----------------da-~~~IqGD~~~~~~ 166 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTAV--LRQWLPTGTLLVDSDLNDFVS-----------------DA-DSTLIGDCATVHT 166 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHHH--HHHHSCTTCEEEEEESSCCBC-----------------SS-SEEEESCGGGEEE
T ss_pred ecCCCEEEeCCCCCCCCCCCcHHH--HHHhCCCCcEEEEeeCccccc-----------------CC-CeEEEcccccccc
Confidence 556789999995 777742 2222443 699999854221 11 2458888765544
Q ss_pred CCCcEEEEEccch---hhcCChh-----h-HHHHHHHHHHcCCCCcEEEEE
Q 023562 227 ETGRYDVIWVQWC---IGHLTDD-----D-FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 227 ~~~~fDlV~~~~~---l~~~~~~-----d-~~~~l~~~~r~LkpGG~lii~ 268 (280)
. ++||+|+|-.. -.+..-+ . .+.++.-+.+.|+|||.|++.
T Consensus 167 ~-~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 167 A-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp S-SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred C-CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 3 78999997532 2222111 2 356777788899999999997
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.009 Score=52.57 Aligned_cols=105 Identities=10% Similarity=-0.036 Sum_probs=75.9
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---------CCCC
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PETG 229 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~~ 229 (280)
..|+++|||-=.....+.......+.-|| -|..++..++.+...+. ....+..++.+|+.+ . +...
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~---~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGV---TPTADRREVPIDLRQ-DWPPALRSAGFDPS 178 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTC---CCSSEEEEEECCTTS-CHHHHHHHTTCCTT
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCC---CCCCCeEEEecchHh-hHHHHHHhccCCCC
Confidence 46999999987665544311112688888 59999999888864221 113567888889876 2 1123
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.-=++++-.+++|+++++...+++.+...+.||+.+++.
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d 217 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 217 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 445777789999999999999999999999999887765
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0031 Score=55.97 Aligned_cols=100 Identities=16% Similarity=0.077 Sum_probs=67.9
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEEEc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV~~ 236 (280)
+.+++|+.||.|.++..+.+.++..+.++|+++.+++..+.++... . ++|+.++... -..+|+|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~--------~-----~~Di~~~~~~~~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------P-----EGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------C-----BSCGGGSCGGGSCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC--------C-----cCCHHHcCHhhCCCCCEEEE
Confidence 4689999999999999999999988999999999999999998652 1 4666665421 135899985
Q ss_pred cc-----hhhc----CChh--hHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 237 QW-----CIGH----LTDD--DFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 237 ~~-----~l~~----~~~~--d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.. +... +.++ .+-.-+-++.+.++|. +++.|||.
T Consensus 78 gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~ 122 (327)
T 2c7p_A 78 GFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVK 122 (327)
T ss_dssp ECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEG
T ss_pred CCCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcH
Confidence 41 1110 1111 1222223344456884 77889984
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0024 Score=56.67 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=56.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-CC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 227 (280)
..++..++|+.||.|..+..+++.. .. +|+++|.++.+++.|+ ++. ..+++++.+++.++. ..
T Consensus 55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~---------~~Rv~lv~~nF~~l~~~L~~~g 124 (347)
T 3tka_A 55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID---------DPRFSIIHGPFSALGEYVAERD 124 (347)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC---------CTTEEEEESCGGGHHHHHHHTT
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc---------CCcEEEEeCCHHHHHHHHHhcC
Confidence 5677899999999999999999874 32 8999999999999984 442 357899999887763 11
Q ss_pred -CCcEEEEEcc
Q 023562 228 -TGRYDVIWVQ 237 (280)
Q Consensus 228 -~~~fDlV~~~ 237 (280)
.+++|.|+..
T Consensus 125 ~~~~vDgILfD 135 (347)
T 3tka_A 125 LIGKIDGILLD 135 (347)
T ss_dssp CTTCEEEEEEE
T ss_pred CCCcccEEEEC
Confidence 1369999844
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0024 Score=54.68 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=45.9
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcC
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~ 203 (280)
..++..++... ..++..|||..||+|..+....+.+. +++|+|+++.+++.+++++...
T Consensus 199 ~~l~~~~i~~~-----~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~ 257 (260)
T 1g60_A 199 RDLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQL 257 (260)
T ss_dssp HHHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhc
Confidence 35555555432 34667999999999999997776654 6999999999999999998653
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0033 Score=56.39 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=48.8
Q ss_pred CccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC
Q 023562 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 224 (280)
+..|||||.|.|.+|..|++.. ..+|+++|+++.++...++.. . ..+++++.+|+.++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--------~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--------GSPLQILKRDPYDW 117 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--------TSSCEEECSCTTCH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--------CCCEEEEECCccch
Confidence 4789999999999999999863 457999999999999998876 2 24688899988654
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0054 Score=54.42 Aligned_cols=103 Identities=11% Similarity=0.009 Sum_probs=69.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcE-EEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC---CCc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEV-DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGR 230 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v-~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~ 230 (280)
...+++|+-||.|.++..+.+.++ ..+ .++|+++.+++..+.++... ++..|+.++... ...
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------------~~~~DI~~~~~~~i~~~~ 76 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------------VQVKNLDSISIKQIESLN 76 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------------CBCCCTTTCCHHHHHHTC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------------cccCChhhcCHHHhccCC
Confidence 456899999999999999988885 556 79999999999999998641 456788777521 126
Q ss_pred EEEEEccch---h----hc----CChhhHHHHHHHHHH-cCCC---CcEEEEEeccC
Q 023562 231 YDVIWVQWC---I----GH----LTDDDFVSFFKRAKV-GLKP---GGFFVLKENIA 272 (280)
Q Consensus 231 fDlV~~~~~---l----~~----~~~~d~~~~l~~~~r-~Lkp---GG~lii~e~~~ 272 (280)
+|+++...- + .. +.+ ....++.++.+ +++. .-.+++.|||.
T Consensus 77 ~Dil~ggpPCQ~fs~S~ag~~~~~~d-~r~~L~~~~~r~~i~~~~~~P~~~~lENV~ 132 (327)
T 3qv2_A 77 CNTWFMSPPCQPYNNSIMSKHKDIND-PRAKSVLHLYRDILPYLINKPKHIFIENVP 132 (327)
T ss_dssp CCEEEECCCCTTCSHHHHTTTCTTTC-GGGHHHHHHHHTTGGGCSSCCSEEEEEECG
T ss_pred CCEEEecCCccCcccccCCCCCCCcc-ccchhHHHHHHHHHHHhccCCCEEEEEchh
Confidence 899985421 2 11 121 22234555555 4432 23577889984
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.015 Score=50.79 Aligned_cols=106 Identities=17% Similarity=0.095 Sum_probs=71.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCc--EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC----CC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TG 229 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~--v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----~~ 229 (280)
..+.+++|+-||.|.++..+.+.++.. |.++|+++.+++.-+.+... ..++..|+.++... .+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~-----------~~~~~~DI~~i~~~~i~~~~ 82 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQG-----------KIMYVGDVRSVTQKHIQEWG 82 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTT-----------CEEEECCGGGCCHHHHHHTC
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCC-----------CceeCCChHHccHHHhcccC
Confidence 456799999999999999998888874 69999999999988887643 34677888877521 13
Q ss_pred cEEEEEcc-----chhhc-----CChh--hHHHHHHHHHHcCCCC-cE----EEEEeccC
Q 023562 230 RYDVIWVQ-----WCIGH-----LTDD--DFVSFFKRAKVGLKPG-GF----FVLKENIA 272 (280)
Q Consensus 230 ~fDlV~~~-----~~l~~-----~~~~--d~~~~l~~~~r~LkpG-G~----lii~e~~~ 272 (280)
.+|+++.. ++... +.++ .+-.-+-++.+.++|. |. +++.|||.
T Consensus 83 ~~Dll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~rii~~~~P~~~~~~P~~~l~ENV~ 142 (295)
T 2qrv_A 83 PFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVV 142 (295)
T ss_dssp CCSEEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHHHHHHHHSCCTTCCCCCEEEEEEES
T ss_pred CcCEEEecCCCccccccCccccccccccchhHHHHHHHHHHhCcccccCCccEEEEEcCc
Confidence 68999843 22211 2211 2222233344556776 32 77889985
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.088 Score=44.92 Aligned_cols=106 Identities=10% Similarity=0.098 Sum_probs=68.2
Q ss_pred CCccEEEeecCccHHHHHHHHh-------cC-CcEEEEe-----CCH----------------------HHHHHH---HH
Q 023562 157 QHLVALDCGSGIGRITKNLLIR-------YF-NEVDLLE-----PVS----------------------HFLDAA---RE 198 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~-------~~-~~v~~vD-----~S~----------------------~~l~~A---~~ 198 (280)
-++.|+|+||-.|..+..+++. +. .+|.++| +.+ ..++.. .+
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 4579999999999988876542 12 3899998 321 111111 11
Q ss_pred HcCcCCCCCCCCCcceeEEEccCCCCC------CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 199 SLAPENHMAPDMHKATNFFCVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 199 ~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+....+. ...+++++.+++.+.- .+..+||+|+.-.-. | ......++.+...|+|||+|++.+.
T Consensus 149 ~~~~~g~----~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-Y---~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 149 CSDFFGH----VTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-Y---EPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TTSTTTT----SCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-H---HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhcCC----CCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-c---chHHHHHHHHHHHhCCCcEEEEcCC
Confidence 2222111 1367999999886531 223579999986542 1 2345688899999999999998774
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.017 Score=50.89 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=69.6
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEEEcc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQ 237 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV~~~ 237 (280)
++|+|+=||.|.++..+-+.|+..+.++|+++.+++.-+.++.. .++.+|+.++... -..+|+++..
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~------------~~~~~DI~~i~~~~~~~~D~l~gg 68 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA------------KLIKGDISKISSDEFPKCDGIIGG 68 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCS------------EEEESCGGGCCGGGSCCCSEEECC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC------------CcccCChhhCCHhhCCcccEEEec
Confidence 37999999999999999888998889999999999998888643 4577888877522 2468999843
Q ss_pred -----chhh----cCChh--hHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 238 -----WCIG----HLTDD--DFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 238 -----~~l~----~~~~~--d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++.. -+.++ .+-.-+-++.+.++|. +++.|||.
T Consensus 69 pPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~ 112 (331)
T 3ubt_Y 69 PPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVK 112 (331)
T ss_dssp CCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECC
T ss_pred CCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeec
Confidence 1111 12221 2222233445557885 67789984
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.05 Score=43.87 Aligned_cols=92 Identities=12% Similarity=0.010 Sum_probs=59.5
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
..++.+||..|+ |.|..+..++.....+|+++|.+++.++.+++.-. .. . .|..+..
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~-----------~~-~--~d~~~~~~~~~~~~ 101 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV-----------EY-V--GDSRSVDFADEILE 101 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC-----------SE-E--EETTCSTHHHHHHH
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC-----------CE-E--eeCCcHHHHHHHHH
Confidence 456789999994 56766666665433469999999998887754211 01 1 1222110
Q ss_pred -CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.....+|+|+.+-. . ..++.+.+.|+|||.+++.-
T Consensus 102 ~~~~~~~D~vi~~~g----~-----~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 102 LTDGYGVDVVLNSLA----G-----EAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp HTTTCCEEEEEECCC----T-----HHHHHHHHTEEEEEEEEECS
T ss_pred HhCCCCCeEEEECCc----h-----HHHHHHHHHhccCCEEEEEc
Confidence 11236999986532 1 46788889999999998864
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.019 Score=53.63 Aligned_cols=60 Identities=20% Similarity=0.093 Sum_probs=48.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 224 (280)
...+++|+-||.|.++..+.+.++..|.++|+++.+++.-+.++... ....+++.|+.++
T Consensus 87 ~~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~--------p~~~~~~~DI~~i 146 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD--------PATHHFNEDIRDI 146 (482)
T ss_dssp CSEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC--------TTTCEEESCTHHH
T ss_pred ccceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC--------CCcceeccchhhh
Confidence 35789999999999999998888878999999999999988887431 2344566777654
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.096 Score=46.73 Aligned_cols=96 Identities=14% Similarity=-0.004 Sum_probs=64.5
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-----CCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TPE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~ 227 (280)
..++.+||-+|||. |..+..+++.. ...|+++|.++..++.+++.-.. .++...-.++ ...
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~~~~ 255 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT------------HVINSKTQDPVAAIKEIT 255 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC------------EEecCCccCHHHHHHHhc
Confidence 55778999999986 77888787654 43699999999999999765322 1111111111 011
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.+.+|+|+-.-.- ...++.+.+.|+|||.+++.-.
T Consensus 256 ~gg~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 256 DGGVNFALESTGS--------PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp TSCEEEEEECSCC--------HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEeCC
Confidence 1379999865331 1467888999999999988644
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.13 Score=45.93 Aligned_cols=100 Identities=18% Similarity=0.030 Sum_probs=64.9
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC----CCC-CCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDF-TPE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~----~~~-~~~ 227 (280)
..++.+||-.|+|. |..+..+++... ..|+++|.++.-++.+++.-... .+++...|+ .+. ...
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA---------TVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE---------EECTTSSCHHHHHHSTTSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE---------EECCCCcCHHHHHHhhhhcc
Confidence 45678999999875 777777776644 37999999999999988753221 011101111 110 011
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.+.+|+|+-+-.- ...++.+.++|++||.+++.-..
T Consensus 251 ~gg~Dvvid~~G~--------~~~~~~~~~~l~~~G~vv~~G~~ 286 (370)
T 4ej6_A 251 PGGVDVVIECAGV--------AETVKQSTRLAKAGGTVVILGVL 286 (370)
T ss_dssp TTCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECSCC
T ss_pred CCCCCEEEECCCC--------HHHHHHHHHHhccCCEEEEEecc
Confidence 2479999865321 14778889999999999886443
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.029 Score=49.11 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=58.5
Q ss_pred CCccEEEeecCccHHHHHHH----HhcCC---cEEEEeCC------------HHHHHHHHHHcCcCCCCCCCCCcceeEE
Q 023562 157 QHLVALDCGSGIGRITKNLL----IRYFN---EVDLLEPV------------SHFLDAARESLAPENHMAPDMHKATNFF 217 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~----~~~~~---~v~~vD~S------------~~~l~~A~~~~~~~~~~~~~~~~~i~~~ 217 (280)
+..+|||+|-|+|......+ +.... +++.+|.. ....+......... .......++.
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~----~~~~v~L~l~ 171 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEY----EGERLSLKVL 171 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEE----ECSSEEEEEE
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccc----cCCcEEEEEE
Confidence 44689999999998654322 22332 34555531 11111122221110 0112356677
Q ss_pred EccCCCC-C-CCCCcEEEEEccc-hhhcCChhhH--HHHHHHHHHcCCCCcEEE
Q 023562 218 CVPLQDF-T-PETGRYDVIWVQW-CIGHLTDDDF--VSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 218 ~~d~~~~-~-~~~~~fDlV~~~~-~l~~~~~~d~--~~~l~~~~r~LkpGG~li 266 (280)
.+|+.+. + .+..+||+|+.-. +-..- +++ ..+++.++++++|||.+.
T Consensus 172 ~GDa~~~l~~l~~~~~Da~flDgFsP~kN--PeLWs~e~f~~l~~~~~pgg~la 223 (308)
T 3vyw_A 172 LGDARKRIKEVENFKADAVFHDAFSPYKN--PELWTLDFLSLIKERIDEKGYWV 223 (308)
T ss_dssp ESCHHHHGGGCCSCCEEEEEECCSCTTTS--GGGGSHHHHHHHHTTEEEEEEEE
T ss_pred echHHHHHhhhcccceeEEEeCCCCcccC--cccCCHHHHHHHHHHhCCCcEEE
Confidence 7877553 2 3335899998753 22221 233 689999999999999875
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.063 Score=47.31 Aligned_cols=94 Identities=18% Similarity=0.057 Sum_probs=63.8
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~ 229 (280)
..++.+||-.|+|. |..+..+++....+|+++|.+++-++.+++.-.. ..+...-.++. ...+
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~~i~~~~~~~~~~~~~~~g 231 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE------------VAVNARDTDPAAWLQKEIG 231 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHHS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC------------EEEeCCCcCHHHHHHHhCC
Confidence 56778999999975 8888888876555899999999999998775322 11111111110 0013
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+|+|+....- ...++.+.+.|+|+|.+++.
T Consensus 232 ~~d~vid~~g~--------~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 232 GAHGVLVTAVS--------PKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp SEEEEEESSCC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEEeCCC--------HHHHHHHHHHhccCCEEEEe
Confidence 68988765321 15778888999999999875
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.062 Score=48.57 Aligned_cols=99 Identities=10% Similarity=-0.131 Sum_probs=64.5
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C------
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T------ 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~------ 225 (280)
..++.+||-+|||. |.++..+++.... +|+++|.|+..++.+++.- .+.+...-.++ .
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-------------a~~i~~~~~~~~~~~~~~~ 249 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-------------FETIDLRNSAPLRDQIDQI 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-------------CEEEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-------------CcEEcCCCcchHHHHHHHH
Confidence 55778999999987 8888888775443 7999999999999887531 11222111111 0
Q ss_pred CCCCcEEEEEccchhh---------cCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 PETGRYDVIWVQWCIG---------HLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~---------~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.....||+|+-.-.-. |.+ ....++.+.++|++||.+++.-
T Consensus 250 ~~g~g~Dvvid~~g~~~~~~~~~~~~~~---~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 250 LGKPEVDCGVDAVGFEAHGLGDEANTET---PNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp HSSSCEEEEEECSCTTCBCSGGGTTSBC---TTHHHHHHHHHEEEEEEEECCS
T ss_pred hCCCCCCEEEECCCCccccccccccccc---cHHHHHHHHHHHhcCCEEEEec
Confidence 0112699998653321 111 1246888899999999988753
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.025 Score=50.23 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=53.8
Q ss_pred ccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC---CCcEEE
Q 023562 159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYDV 233 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fDl 233 (280)
.+++|+-||.|.++..+.+.++ ..|.++|+++.+++.-+.++.. ..++..|+.++... ...+|+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----------~~~~~~DI~~~~~~~~~~~~~D~ 72 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----------TNLLNRNIQQLTPQVIKKWNVDT 72 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------SCEECCCGGGCCHHHHHHTTCCE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----------CceeccccccCCHHHhccCCCCE
Confidence 5899999999999999988886 5789999999999999998754 33567787776421 136899
Q ss_pred EEcc
Q 023562 234 IWVQ 237 (280)
Q Consensus 234 V~~~ 237 (280)
++..
T Consensus 73 l~gg 76 (333)
T 4h0n_A 73 ILMS 76 (333)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9843
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.056 Score=49.31 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=40.7
Q ss_pred CCCCccEEEeecCccHHHHHHH-HhcC--CcEEEEeCCHHHHHHHHHHcCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLL-IRYF--NEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~-~~~~--~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
..++..|+|+||+.|..+..++ ..+. .+|.++|+++...+..++++..
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 3567899999999999999887 4443 4899999999999999988765
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.16 Score=45.01 Aligned_cols=95 Identities=16% Similarity=-0.002 Sum_probs=63.6
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
..++.+||-+|+|. |..+..+++.... .|+++|.+++-++.+++.-... ++...-.++. .
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~------------vi~~~~~~~~~~v~~~t 231 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD------------IINYKNGDIVEQILKAT 231 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCE------------EECGGGSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCce------------EEcCCCcCHHHHHHHHc
Confidence 56778999999876 7777777766443 7999999999999998764321 1111111110 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
....+|+|+-.-.- + ..++.+.+.|+|||.+++.-
T Consensus 232 ~g~g~D~v~d~~g~-----~---~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 232 DGKGVDKVVIAGGD-----V---HTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp TTCCEEEEEECSSC-----T---THHHHHHHHEEEEEEEEECC
T ss_pred CCCCCCEEEECCCC-----h---HHHHHHHHHHhcCCEEEEec
Confidence 22369999864321 1 46778889999999998764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.054 Score=47.94 Aligned_cols=91 Identities=15% Similarity=0.034 Sum_probs=63.2
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+||-+|+|. |..+..+++....+|++++.+++-++.+++.-.. . ++ .+...+. ..+|+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-----------~-v~-~~~~~~~---~~~D~ 237 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVK-----------H-FY-TDPKQCK---EELDF 237 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCS-----------E-EE-SSGGGCC---SCEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCC-----------e-ec-CCHHHHh---cCCCE
Confidence 56778999999875 7777777776444799999999999988774222 1 11 2222222 27999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+-+-.- + ..++.+.+.|+|+|.+++.-
T Consensus 238 vid~~g~-----~---~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 238 IISTIPT-----H---YDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp EEECCCS-----C---CCHHHHHTTEEEEEEEEECC
T ss_pred EEECCCc-----H---HHHHHHHHHHhcCCEEEEEC
Confidence 9864331 1 25667888999999998863
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.09 Score=46.12 Aligned_cols=93 Identities=9% Similarity=0.030 Sum_probs=61.4
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC---CC----
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FT---- 225 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~---~~---- 225 (280)
..++.+||-.|| |.|..+..++.....+|+++|.++..++.+++. ... ...|..+ +.
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~-g~~-------------~~~d~~~~~~~~~~~~ 208 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI-GFD-------------AAFNYKTVNSLEEALK 208 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TCS-------------EEEETTSCSCHHHHHH
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc-CCc-------------EEEecCCHHHHHHHHH
Confidence 556789999998 677777767665444799999999988888443 110 1112222 10
Q ss_pred -CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
...+.+|+++.+-. . ..++.+.+.|++||.+++.-.
T Consensus 209 ~~~~~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 209 KASPDGYDCYFDNVG-------G--EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp HHCTTCEEEEEESSC-------H--HHHHHHHTTEEEEEEEEECCC
T ss_pred HHhCCCCeEEEECCC-------h--HHHHHHHHHHhcCCEEEEEec
Confidence 01147999986643 1 246778899999999987643
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.13 Score=46.42 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=36.5
Q ss_pred CCccEEEeecCccHHHHHHHHhc------CC--cEEEEeCCHHHHHHHHHHcCc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY------FN--EVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~------~~--~v~~vD~S~~~l~~A~~~~~~ 202 (280)
.+..|+|+|.|.|.++..+++.. +. +++.||+|+...+.=++++..
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 133 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG 133 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence 45689999999999998887531 12 799999999999877777654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.26 Score=43.65 Aligned_cols=98 Identities=16% Similarity=0.082 Sum_probs=62.1
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEE---EccC-CCCC-CC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF---CVPL-QDFT-PE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~---~~d~-~~~~-~~ 227 (280)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.-... -+++. ..++ +.+. ..
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL---------VLQISKESPQEIARKVEGQL 239 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE---------EEECSSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE---------EEcCcccccchHHHHHHHHh
Confidence 55678999999875 7778878775444 7999999999999887642210 01110 0000 0000 00
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
...+|+|+-.-.- . ..+..+.++|+|||.+++.-
T Consensus 240 ~~g~D~vid~~g~------~--~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 240 GCKPEVTIECTGA------E--ASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp TSCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEECS
T ss_pred CCCCCEEEECCCC------h--HHHHHHHHHhcCCCEEEEEe
Confidence 1468998754321 1 46778889999999998763
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.15 Score=44.95 Aligned_cols=95 Identities=14% Similarity=0.004 Sum_probs=61.3
Q ss_pred CCCCccEEEeecC--ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG--~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
..++.+||-.|+| .|..+..+++....+|++++.++.-++.+++.-.. ..+...-.++. .
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~------------~~~~~~~~~~~~~~~~~~ 209 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAA------------YVIDTSTAPLYETVMELT 209 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCc------------EEEeCCcccHHHHHHHHh
Confidence 5677899999987 67777777765444799999999999988875322 11111111110 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
....+|+|+.+-.- +. +....+.|+|||.+++.-.
T Consensus 210 ~~~g~Dvvid~~g~-----~~----~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 210 NGIGADAAIDSIGG-----PD----GNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp TTSCEEEEEESSCH-----HH----HHHHHHTEEEEEEEEECCC
T ss_pred CCCCCcEEEECCCC-----hh----HHHHHHHhcCCCEEEEEee
Confidence 12479999865331 11 2334489999999988644
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.24 Score=43.74 Aligned_cols=95 Identities=15% Similarity=-0.021 Sum_probs=61.7
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-CCCCC------C
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~------~ 226 (280)
..++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.-.. ..+..+ -.++. .
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~~~~~~~~~~~~~~i~~~~ 233 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD------------VTLVVDPAKEEESSIIERI 233 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------------EEEECCTTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC------------EEEcCcccccHHHHHHHHh
Confidence 45678999999875 6777777765444599999999999988764221 111111 01110 0
Q ss_pred C---CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 227 E---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 227 ~---~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
. ...+|+|+-+-.- ...++.+.+.|+|+|.+++.-
T Consensus 234 ~~~~g~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 234 RSAIGDLPNVTIDCSGN--------EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp HHHSSSCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECS
T ss_pred ccccCCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 0 1468998865321 136778889999999998763
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.19 Score=44.11 Aligned_cols=95 Identities=11% Similarity=-0.011 Sum_probs=62.6
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CC
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 227 (280)
..++.+||-.|| |.|..+..+++....+|++++.+++-++.+.+.+... ..+...-.++. ..
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~~~~~~~~~~~ 215 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFD-----------GAIDYKNEDLAAGLKREC 215 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCS-----------EEEETTTSCHHHHHHHHC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCC-----------EEEECCCHHHHHHHHHhc
Confidence 567789999998 6778888777664448999999999888884333211 11111111110 01
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.+.+|+|+.+-. . ..+..+.+.|++||.+++.-
T Consensus 216 ~~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 216 PKGIDVFFDNVG-------G--EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp TTCEEEEEESSC-------H--HHHHHHHTTEEEEEEEEECC
T ss_pred CCCceEEEECCC-------c--chHHHHHHHHhhCCEEEEEe
Confidence 246999986533 1 36788889999999998863
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.28 Score=43.06 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=62.7
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCC---CCC----
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ---DFT---- 225 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~---~~~---- 225 (280)
..++.+||-.|| |.|..+..++.....+|++++.++..++.+++.+... ..+ |.. ++.
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~-----------~~~--d~~~~~~~~~~~~ 219 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFD-----------DAF--NYKEESDLTAALK 219 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCS-----------EEE--ETTSCSCSHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCc-----------eEE--ecCCHHHHHHHHH
Confidence 556789999997 6777777777654447999999999988887443211 011 221 110
Q ss_pred -CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
...+.+|+|+.+-. . ..++.+.+.|++||.+++.-
T Consensus 220 ~~~~~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 220 RCFPNGIDIYFENVG-------G--KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp HHCTTCEEEEEESSC-------H--HHHHHHHTTEEEEEEEEECC
T ss_pred HHhCCCCcEEEECCC-------H--HHHHHHHHHHhcCCEEEEEc
Confidence 01146999986543 1 36778889999999998763
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.25 Score=43.89 Aligned_cols=96 Identities=14% Similarity=-0.052 Sum_probs=64.0
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------CC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~ 227 (280)
..++.+||-+|+|. |..+..+++....+|++++.++.-++.+++.-.. .++..+-.++. ..
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~v~~~~~ 254 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD------------HGINRLEEDWVERVYALTG 254 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC------------EEEcCCcccHHHHHHHHhC
Confidence 56778999999875 7777777766545799999999999998775322 11111111110 11
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
...+|+|+-+-. . ..+..+.+.|+|||.+++.-..
T Consensus 255 g~g~D~vid~~g----~-----~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 255 DRGADHILEIAG----G-----AGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp TCCEEEEEEETT----S-----SCHHHHHHHEEEEEEEEEECCC
T ss_pred CCCceEEEECCC----h-----HHHHHHHHHhhcCCEEEEEecC
Confidence 237999986533 1 2466678899999999987443
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.2 Score=44.51 Aligned_cols=97 Identities=19% Similarity=0.024 Sum_probs=64.2
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE-----ccCCC-CC-
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-----VPLQD-FT- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~-----~d~~~-~~- 225 (280)
..++.+||-+|+|. |..+..+++.... .|.++|.|++-++.+++. ... .+++.. .++.+ +.
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~---------~~~~~~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE---------VVTHKVERLSAEESAKKIVE 246 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT---------CEEEECCSCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh---------cccccccccchHHHHHHHHH
Confidence 55778999999865 7777777766443 599999999999999987 421 122221 11100 00
Q ss_pred -CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.....+|+|+-+-.- . ..++.+.++|++||.+++.-
T Consensus 247 ~t~g~g~Dvvid~~g~------~--~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 247 SFGGIEPAVALECTGV------E--SSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp HTSSCCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEECC
T ss_pred HhCCCCCCEEEECCCC------h--HHHHHHHHHhcCCCEEEEEc
Confidence 112468999865331 1 46788889999999998863
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.39 E-value=0.26 Score=44.37 Aligned_cols=100 Identities=9% Similarity=-0.088 Sum_probs=64.6
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CC------
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT------ 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~------ 225 (280)
..++.+||-+|||. |.++..+++.... .|+++|.++.-++.+++.-. +.+...-.+ +.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa-------------~~i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-------------EIADLSLDTPLHEQIAAL 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-------------EEEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCC-------------cEEccCCcchHHHHHHHH
Confidence 55778999999876 7788888776443 69999999999999976421 112111011 10
Q ss_pred CCCCcEEEEEccchhh---------cCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 PETGRYDVIWVQWCIG---------HLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~---------~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.....+|+|+-+-.-. |.+ +....++.+.++|++||.+++.-
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHGHEGAKHE--APATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSB--CTTHHHHHHHHHEEEEEEEEECS
T ss_pred hCCCCCCEEEECCCCccccccccccccc--chHHHHHHHHHHHhcCCEEEEec
Confidence 0113699998653211 111 12257888899999999998764
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.26 Score=43.36 Aligned_cols=92 Identities=18% Similarity=0.098 Sum_probs=60.8
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC------
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------ 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------ 227 (280)
..++.+||-+|+| .|..+..+++....+|++++.++.-++.+++.-.. ...|..+....
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~--------------~~~d~~~~~~~~~~~~~ 227 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD--------------LVVNPLKEDAAKFMKEK 227 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS--------------EEECTTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCC--------------EEecCCCccHHHHHHHH
Confidence 4567899999986 47777777765444799999999999988753211 11122211100
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+.+|+|+.+-.. ...++.+.+.|+++|.+++.
T Consensus 228 ~~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 228 VGGVHAAVVTAVS--------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp HSSEEEEEESSCC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred hCCCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEe
Confidence 0369999865331 14677888999999998875
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.29 Score=42.82 Aligned_cols=94 Identities=19% Similarity=0.111 Sum_probs=62.6
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
..++.+||-.|+ |.|..+..+++....+|++++.++.-++.+++.-.. ..+...-.++. .
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------------~~~~~~~~~~~~~~~~~~ 213 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAE------------YLINASKEDILRQVLKFT 213 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc------------EEEeCCCchHHHHHHHHh
Confidence 567789999994 667777777766445799999999999988764221 11111111110 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
....+|+|+.+-.- ..++.+.+.|+|||.+++.-
T Consensus 214 ~~~g~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 214 NGKGVDASFDSVGK---------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp TTSCEEEEEECCGG---------GGHHHHHHHEEEEEEEEECC
T ss_pred CCCCceEEEECCCh---------HHHHHHHHHhccCCEEEEEc
Confidence 12469999865431 35667788999999998863
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.28 Score=42.76 Aligned_cols=96 Identities=11% Similarity=0.007 Sum_probs=63.6
Q ss_pred CCCCccEEEee--cCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlG--cG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
..++.+||-.| .|.|..+..+++....+|++++.+++-++.+++.-.. ..+...-.++. .
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~------------~~~~~~~~~~~~~~~~~~ 205 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAW------------ETIDYSHEDVAKRVLELT 205 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC------------EEEeCCCccHHHHHHHHh
Confidence 55778999998 4567888777766444799999999999988865321 11111111110 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
....+|+|+.+-.- ..+..+.+.|++||.+++.-..
T Consensus 206 ~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 206 DGKKCPVVYDGVGQ---------DTWLTSLDSVAPRGLVVSFGNA 241 (325)
T ss_dssp TTCCEEEEEESSCG---------GGHHHHHTTEEEEEEEEECCCT
T ss_pred CCCCceEEEECCCh---------HHHHHHHHHhcCCCEEEEEecC
Confidence 12479999865331 2566778899999999987443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.25 E-value=0.15 Score=45.67 Aligned_cols=95 Identities=17% Similarity=0.028 Sum_probs=61.6
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-CCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~fD 232 (280)
..++.+||-+|+|. |..+..+++....+|++++.|+.-++.+++.-... -++....+ +..+. +.+|
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~~~---~g~D 259 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE---------VVNSRNADEMAAHL---KSFD 259 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE---------EEETTCHHHHHTTT---TCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcE---------EeccccHHHHHHhh---cCCC
Confidence 55778999999985 77777777654446999999999999988642210 01100001 11111 4799
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|+-.-.-. ..++.+.+.|+|+|.+++.-
T Consensus 260 vvid~~g~~--------~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 260 FILNTVAAP--------HNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp EEEECCSSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCCH--------HHHHHHHHHhccCCEEEEec
Confidence 998653311 24566788999999988753
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.19 E-value=0.19 Score=44.12 Aligned_cols=58 Identities=7% Similarity=-0.047 Sum_probs=45.5
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcC
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~ 203 (280)
.++..++... ..++..|||.-||+|..+....+.+. +..|+|+++.+.+.+++++...
T Consensus 240 ~l~~~~i~~~-----~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~ 297 (323)
T 1boo_A 240 KLPEFFIRML-----TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN 297 (323)
T ss_dssp HHHHHHHHHH-----CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred HHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhc
Confidence 4555555432 34677899999999999987665554 6999999999999999998764
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.23 Score=43.84 Aligned_cols=95 Identities=14% Similarity=0.066 Sum_probs=61.6
Q ss_pred CCCCccEEEeecC--ccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-----CC
Q 023562 155 NNQHLVALDCGSG--IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TP 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG--~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~ 226 (280)
..++.+||-.|+| .|..+..++... ..+|.++|.++..++.+++.-.. .++...-.++ ..
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~ 235 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD------------YVINASMQDPLAEIRRI 235 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC------------EEecCCCccHHHHHHHH
Confidence 4567899999998 666666666654 44799999999999988764211 1111110111 00
Q ss_pred CC-CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 227 ET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 227 ~~-~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.. +.+|+|+.+-.- ...++.+.+.|+|+|.+++.-
T Consensus 236 ~~~~~~d~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 236 TESKGVDAVIDLNNS--------EKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp TTTSCEEEEEESCCC--------HHHHTTGGGGEEEEEEEEECC
T ss_pred hcCCCceEEEECCCC--------HHHHHHHHHHHhcCCEEEEEC
Confidence 11 479999865331 146778889999999998754
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.63 Score=41.93 Aligned_cols=100 Identities=12% Similarity=-0.056 Sum_probs=60.2
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
..++.+||-+|+|. |..+..+++.... .|+++|.++.-++.+++.-... ++...-.++. .
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~------------vi~~~~~~~~~~i~~~t 278 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADH------------VIDPTKENFVEAVLDYT 278 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE------------EECTTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE------------EEcCCCCCHHHHHHHHh
Confidence 56778999999864 6667777765443 7999999999999998763321 1111101110 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
....+|+|+-+-.-. ...+..+++.+.+.+++||.+++.-
T Consensus 279 ~g~g~D~vid~~g~~---~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 279 NGLGAKLFLEATGVP---QLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp TTCCCSEEEECSSCH---HHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCCCCCEEEECCCCc---HHHHHHHHHHHHhccCCCcEEEEeC
Confidence 123699998543210 0012234444446669999998863
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.61 Score=41.01 Aligned_cols=93 Identities=16% Similarity=0.051 Sum_probs=60.7
Q ss_pred CCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------CCC
Q 023562 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET 228 (280)
Q Consensus 157 ~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 228 (280)
++.+||-+|+|. |..+..+++.... +|++++.++.-++.+++.-... .+..+-.++. ...
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~------------~~~~~~~~~~~~v~~~~~g 234 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADY------------VINPFEEDVVKEVMDITDG 234 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSE------------EECTTTSCHHHHHHHHTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE------------EECCCCcCHHHHHHHHcCC
Confidence 778999999863 6677777765444 7999999999999887643210 1111101110 112
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
..+|+|+.+-.. ...++.+.+.|+++|.+++.-
T Consensus 235 ~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 235 NGVDVFLEFSGA--------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp SCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence 369999865331 146778889999999998764
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.35 Score=42.51 Aligned_cols=93 Identities=11% Similarity=-0.024 Sum_probs=62.8
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
..++.+||-.|+ |.|..+..++.....+|++++.++..++.+++.-.. ..+ |..+..
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~------------~~~--d~~~~~~~~~~~~ 229 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGAD------------ETV--NYTHPDWPKEVRR 229 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS------------EEE--ETTSTTHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCC------------EEE--cCCcccHHHHHHH
Confidence 556789999998 678888878776444799999999999988753211 111 221110
Q ss_pred -CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.....+|+|+.+-. . ..++.+.+.|+++|.+++.-.
T Consensus 230 ~~~~~~~d~vi~~~g-~--------~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 230 LTGGKGADKVVDHTG-A--------LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp HTTTTCEEEEEESSC-S--------SSHHHHHHHEEEEEEEEESSC
T ss_pred HhCCCCceEEEECCC-H--------HHHHHHHHhhccCCEEEEEec
Confidence 11247999986643 1 246677889999999987643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.39 Score=42.48 Aligned_cols=92 Identities=12% Similarity=0.038 Sum_probs=60.7
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
..++.+||-.|+ |.|..+..++.....+|++++.+++-++.+++.-.. .. .|..+..
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------------~~--~d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH------------EV--FNHREVNYIDKIKK 233 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EE--EETTSTTHHHHHHH
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCC------------EE--EeCCCchHHHHHHH
Confidence 556789999997 667777777765444799999999988877653211 11 1221111
Q ss_pred -CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.....+|+|+.+-. . ..+..+.++|+|+|.+++.-
T Consensus 234 ~~~~~~~D~vi~~~G-------~--~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 234 YVGEKGIDIIIEMLA-------N--VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHCTTCEEEEEESCH-------H--HHHHHHHHHEEEEEEEEECC
T ss_pred HcCCCCcEEEEECCC-------h--HHHHHHHHhccCCCEEEEEe
Confidence 11236999987643 1 24667789999999998753
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.19 Score=44.29 Aligned_cols=95 Identities=15% Similarity=-0.001 Sum_probs=64.4
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
..++.+||-+|+|. |..+..+++.. ..+|+++|.+++-++.+++.-.. .++..+ .++. .
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~------------~~i~~~-~~~~~~v~~~t 235 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD------------AAVKSG-AGAADAIRELT 235 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS------------EEEECS-TTHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC------------EEEcCC-CcHHHHHHHHh
Confidence 45678999999876 77778787664 56899999999999999875322 111111 1110 0
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
....+|+|+-+-.- . ..++.+.+.|++||.+++.-.
T Consensus 236 ~g~g~d~v~d~~G~------~--~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 236 GGQGATAVFDFVGA------Q--STIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp GGGCEEEEEESSCC------H--HHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCCeEEEECCCC------H--HHHHHHHHHHhcCCEEEEECC
Confidence 11369999864331 1 478888999999999988643
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.048 Score=48.20 Aligned_cols=95 Identities=14% Similarity=-0.055 Sum_probs=61.9
Q ss_pred CCccEEEeecCc-cHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE-cc-CCCCCCCCCcE
Q 023562 157 QHLVALDCGSGI-GRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VP-LQDFTPETGRY 231 (280)
Q Consensus 157 ~~~~VLDlGcG~-G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~-~d-~~~~~~~~~~f 231 (280)
++.+||-+|+|. |..+..+++.. ..+|++++.|++-++.+++.-... -++... .+ +..+. ....+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~---------vi~~~~~~~~~~~~~-~g~g~ 239 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADY---------VSEMKDAESLINKLT-DGLGA 239 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSE---------EECHHHHHHHHHHHH-TTCCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCE---------EeccccchHHHHHhh-cCCCc
Confidence 678999999874 67777777665 447999999999999988753221 011101 11 11111 12379
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|+-.-.- ...++.+.+.|+|||.+++.-
T Consensus 240 D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 240 SIAIDLVGT--------EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp EEEEESSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred cEEEECCCC--------hHHHHHHHHHhhcCCEEEEeC
Confidence 999865331 146788889999999998763
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.81 Score=40.60 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=62.4
Q ss_pred CCccEEEee--cCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeE---EEccCCCCCCCCCc
Q 023562 157 QHLVALDCG--SGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF---FCVPLQDFTPETGR 230 (280)
Q Consensus 157 ~~~~VLDlG--cG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~---~~~d~~~~~~~~~~ 230 (280)
++.+||-.| .|.|..+..+++. +..+|++++.+++-++.+++.-... -++. ....+.++ ..+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~---------vi~~~~~~~~~v~~~--~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHH---------VIDHSKPLAAEVAAL--GLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSE---------EECTTSCHHHHHHTT--CSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCE---------EEeCCCCHHHHHHHh--cCCC
Confidence 567899998 3558888888876 4558999999999999987642221 0000 00011111 2357
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|+|+-+-. -...++.+.++|+|+|.+++.
T Consensus 240 ~Dvvid~~g--------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 240 PAFVFSTTH--------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEEEECSC--------HHHHHHHHHHHSCTTCEEEEC
T ss_pred ceEEEECCC--------chhhHHHHHHHhcCCCEEEEE
Confidence 999986432 114778889999999999886
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.75 E-value=0.39 Score=41.79 Aligned_cols=93 Identities=13% Similarity=0.017 Sum_probs=61.4
Q ss_pred CCCCccEEEee--cCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 155 ~~~~~~VLDlG--cG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
..++.+||-.| +|.|..+..++.....+|++++.++..++.+++.-.. .. .|..+..
T Consensus 138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~------------~~--~~~~~~~~~~~~~~ 203 (327)
T 1qor_A 138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW------------QV--INYREEDLVERLKE 203 (327)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS------------EE--EETTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC------------EE--EECCCccHHHHHHH
Confidence 55678999999 5667777766665334799999999988888763211 01 1221110
Q ss_pred -CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.....+|+|+.+-. . ..++.+.+.|++||.+++.-.
T Consensus 204 ~~~~~~~D~vi~~~g----~-----~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 204 ITGGKKVRVVYDSVG----R-----DTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp HTTTCCEEEEEECSC----G-----GGHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCceEEEECCc----h-----HHHHHHHHHhcCCCEEEEEec
Confidence 11236999986643 1 356778899999999987643
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.76 Score=34.68 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=56.3
Q ss_pred CccEEEeecCc-cHH-HHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcE
Q 023562 158 HLVALDCGSGI-GRI-TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (280)
Q Consensus 158 ~~~VLDlGcG~-G~~-s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~f 231 (280)
..+|+=+|||. |.. +..|.+.+. .|+++|.+++.++.+++. .+.++.+|..+.. ..-..+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~-------------g~~~i~gd~~~~~~l~~a~i~~a 72 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRER-------------GVRAVLGNAANEEIMQLAHLECA 72 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-------------TCEEEESCTTSHHHHHHTTGGGC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHc-------------CCCEEECCCCCHHHHHhcCcccC
Confidence 35799999865 332 223333455 599999999999887652 2456777776532 112468
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+|++... ++.....+-...+.+.|+..++..
T Consensus 73 d~vi~~~~-----~~~~n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 73 KWLILTIP-----NGYEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp SEEEECCS-----CHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred CEEEEECC-----ChHHHHHHHHHHHHHCCCCeEEEE
Confidence 88876533 122223344456777888877664
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.54 E-value=0.54 Score=41.79 Aligned_cols=95 Identities=15% Similarity=0.010 Sum_probs=61.6
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-C-CCCC-----
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L-QDFT----- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-~-~~~~----- 225 (280)
..++.+||-+|+|. |..+..+++.... .|+++|.|+.-++.+++.-.. .++... . .++.
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~~~~~~ 257 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT------------DFVNPNDHSEPISQVLSK 257 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc------------eEEeccccchhHHHHHHH
Confidence 55678999999865 6777777765443 799999999999988764221 011111 0 1110
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (280)
...+.+|+|+-+-.- ...++.+.++|+|| |.+++.-
T Consensus 258 ~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 258 MTNGGVDFSLECVGN--------VGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp HHTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HhCCCCCEEEECCCC--------HHHHHHHHHHhhcCCcEEEEEc
Confidence 001368998754321 14678889999999 9998763
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.17 Score=50.01 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=40.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhc------CCcEEEEeCCHHHHHHHHHHcCc
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~------~~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
.+..+|+|+=||.|.++..|.+.+ +..+.++|+++.+++.-+.|+..
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp~ 262 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHPQ 262 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCTT
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCCC
Confidence 445789999999999999887765 55788999999999999888754
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.45 Score=41.87 Aligned_cols=93 Identities=11% Similarity=-0.018 Sum_probs=61.9
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCC---CCC----
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ---DFT---- 225 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~---~~~---- 225 (280)
..++.+||-.|+ |.|..+..++.....+|++++.++..++.+++.-.. ...|.. ++.
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~--------------~~~d~~~~~~~~~~~~ 232 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGE--------------VFIDFTKEKDIVGAVL 232 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCC--------------EEEETTTCSCHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCc--------------eEEecCccHhHHHHHH
Confidence 556789999998 577777777765444799999998888877653111 111322 110
Q ss_pred -CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
...+.+|+|+.+-.. ...++.+.+.|+++|.+++.-
T Consensus 233 ~~~~~~~D~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 233 KATDGGAHGVINVSVS--------EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp HHHTSCEEEEEECSSC--------HHHHHHHTTSEEEEEEEEECC
T ss_pred HHhCCCCCEEEECCCc--------HHHHHHHHHHHhcCCEEEEEe
Confidence 001269999876431 146788899999999998753
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=0.53 Score=41.58 Aligned_cols=95 Identities=17% Similarity=0.038 Sum_probs=60.7
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
..++.+||-.|+ |.|..+..++.....+|++++.+++.++.+++.-.. ..+..+-.++. .
T Consensus 160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~ 227 (354)
T 2j8z_A 160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAA------------AGFNYKKEDFSEATLKFT 227 (354)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCc------------EEEecCChHHHHHHHHHh
Confidence 556789999984 667777777765444799999999999888654211 01111111110 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
....+|+|+.+-.- ..+..+.++|++||.+++.-.
T Consensus 228 ~~~~~d~vi~~~G~---------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 228 KGAGVNLILDCIGG---------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp TTSCEEEEEESSCG---------GGHHHHHHHEEEEEEEEECCC
T ss_pred cCCCceEEEECCCc---------hHHHHHHHhccCCCEEEEEec
Confidence 12469999866431 135667789999999988643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.64 Score=41.27 Aligned_cols=95 Identities=16% Similarity=0.004 Sum_probs=61.6
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cC-CCCC-----
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT----- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~-~~~~----- 225 (280)
..++.+||-+|+|. |..+..+++.. ...|+++|.|+.-++.+++.-... ++.. +. .++.
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~------------vi~~~~~~~~~~~~v~~ 255 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE------------CINPQDFSKPIQEVLIE 255 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE------------EECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce------------EeccccccccHHHHHHH
Confidence 55678999999865 66777777654 437999999999999988653220 1111 10 1110
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (280)
...+.+|+|+-+-.- ...++.+.+.|+|+ |.+++.-
T Consensus 256 ~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 256 MTDGGVDYSFECIGN--------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp HTTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HhCCCCCEEEECCCc--------HHHHHHHHHhhccCCcEEEEEe
Confidence 111368998855321 14678889999999 9998753
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.6 Score=41.51 Aligned_cols=95 Identities=13% Similarity=-0.094 Sum_probs=61.7
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-C-CCCC-----
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L-QDFT----- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-~-~~~~----- 225 (280)
..++.+||-+|+|. |..+..+++.. ...|+++|.++.-++.+++.-.. .++... . .++.
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~i~~ 256 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT------------ECLNPKDYDKPIYEVICE 256 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc------------EEEecccccchHHHHHHH
Confidence 55678999999875 67777777654 43799999999999988764221 011111 0 1110
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (280)
...+.+|+|+-.-.- ...++.+.++|+++ |.+++.-
T Consensus 257 ~t~gg~Dvvid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 257 KTNGGVDYAVECAGR--------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp HTTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred HhCCCCCEEEECCCC--------HHHHHHHHHHHhcCCCEEEEEc
Confidence 011368999854321 14678888999999 9998753
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.18 Score=48.83 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=65.5
Q ss_pred CCccEEEeecCccHHHHHHHHhc-----------CC--cEEEEeC---CHHHHHHHHHHcCc-----------CCCCC--
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-----------FN--EVDLLEP---VSHFLDAARESLAP-----------ENHMA-- 207 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-----------~~--~v~~vD~---S~~~l~~A~~~~~~-----------~~~~~-- 207 (280)
+..+|||+|-|+|......++.. .. +++.+|. +.+.+..+-+.... .....
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34689999999998777665432 11 5888998 77777744332111 10000
Q ss_pred ------CCCCcceeEEEccCCCC-C-CC---CCcEEEEEccchhhcCChhhH-HHHHHHHHHcCCCCcEEEE
Q 023562 208 ------PDMHKATNFFCVPLQDF-T-PE---TGRYDVIWVQWCIGHLTDDDF-VSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 208 ------~~~~~~i~~~~~d~~~~-~-~~---~~~fDlV~~~~~l~~~~~~d~-~~~l~~~~r~LkpGG~lii 267 (280)
..-...++...+|+.+. + .. ...||+|+.-..--...++-+ ..+++.++++++|||.+.-
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 00013455666665442 1 11 367999987532222222222 5899999999999998764
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.5 Score=42.13 Aligned_cols=96 Identities=15% Similarity=-0.008 Sum_probs=62.9
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc--CCCCC-----
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP--LQDFT----- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d--~~~~~----- 225 (280)
..++.+||-+|+|. |..+..+++. +..+|+++|.++.-++.+++.-.. .++... -.++.
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~i~~ 258 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN------------EFVNPKDHDKPIQEVIVD 258 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc------------EEEccccCchhHHHHHHH
Confidence 56778999999874 7777777765 444799999999999988764322 011111 01110
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCC-cEEEEEec
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e~ 270 (280)
...+.+|+|+-+-.- ...+..+.+.|++| |.+++.-.
T Consensus 259 ~~~gg~D~vid~~g~--------~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 259 LTDGGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp HTTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred hcCCCCCEEEECCCC--------HHHHHHHHHHhhccCCEEEEEcc
Confidence 112379999865321 14788889999997 99988643
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=92.01 E-value=0.27 Score=43.23 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=45.5
Q ss_pred hHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCH---HHHHHHHHHcCcC
Q 023562 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS---HFLDAARESLAPE 203 (280)
Q Consensus 138 ~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~---~~l~~A~~~~~~~ 203 (280)
+..++..++... ..++..|||.-||+|..+....+.+. +..|+|+++ ..++.+++++...
T Consensus 228 p~~l~~~~i~~~-----~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 228 PAAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp CHHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHh-----CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHc
Confidence 345666666432 34677999999999999997776655 699999999 9999999998763
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.74 Score=40.93 Aligned_cols=95 Identities=13% Similarity=-0.075 Sum_probs=61.3
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cC-CCCC-----
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT----- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~-~~~~----- 225 (280)
..++.+||-+|+|. |..+..+++.... +|+++|.+++-++.+++.-.. ..+.. +. .++.
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~v~~ 260 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT------------DCLNPRELDKPVQDVITE 260 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc------------EEEccccccchHHHHHHH
Confidence 55678999999874 6777777766444 799999999999988764221 01111 00 1110
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (280)
...+.+|+|+-+-.- ...++.+.+.|++| |.+++.-
T Consensus 261 ~~~~g~Dvvid~~G~--------~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 261 LTAGGVDYSLDCAGT--------AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp HHTSCBSEEEESSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred HhCCCccEEEECCCC--------HHHHHHHHHHhhcCCCEEEEEC
Confidence 001368998754321 14678889999999 9998753
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=91.87 E-value=0.66 Score=41.12 Aligned_cols=95 Identities=12% Similarity=-0.019 Sum_probs=63.3
Q ss_pred CCCCccEEEee--cCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CC
Q 023562 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (280)
Q Consensus 155 ~~~~~~VLDlG--cG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 227 (280)
..++.+||-.| .|.|..+..+++....+|++++.+++-++.+++.-.. ..+..+-.++. ..
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~------------~~~~~~~~~~~~~~~~~~ 228 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCD------------RPINYKTEPVGTVLKQEY 228 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCc------------EEEecCChhHHHHHHHhc
Confidence 45678999999 5778888888776444799999999988888763211 11111111110 01
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
...+|+|+.+-. . ..++.+.+.|+++|.+++.-.
T Consensus 229 ~~g~D~vid~~g-------~--~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 229 PEGVDVVYESVG-------G--AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp TTCEEEEEECSC-------T--HHHHHHHHHEEEEEEEEECCC
T ss_pred CCCCCEEEECCC-------H--HHHHHHHHHHhcCCEEEEEeC
Confidence 246999986533 1 467788899999999988643
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=91.87 E-value=0.29 Score=43.03 Aligned_cols=90 Identities=17% Similarity=0.094 Sum_probs=59.0
Q ss_pred CCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC--CC-----CC
Q 023562 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FT-----PE 227 (280)
Q Consensus 157 ~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~-----~~ 227 (280)
++.+||-+|+|. |..+..+++.... +|++++.+++-++.+++. ... . .|..+ +. ..
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~------------v--~~~~~~~~~~~~~~~~ 228 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADR------------L--VNPLEEDLLEVVRRVT 228 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSE------------E--ECTTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHh------------c--cCcCccCHHHHHHHhc
Confidence 678999999854 6677777765444 799999999888777654 221 1 11111 10 00
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
...+|+|+-.-.- ...++.+.+.|+++|.+++.-
T Consensus 229 ~~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 229 GSGVEVLLEFSGN--------EAAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp SSCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 2469999865331 146778889999999988753
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.87 E-value=0.35 Score=42.60 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=62.8
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
..++.+||-.|+ |.|..+..+++....+|++++.++.-++.+++.-.. .++..+ .++. .
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------------~v~~~~-~~~~~~v~~~~ 223 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGAD------------IVLPLE-EGWAKAVREAT 223 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS------------EEEESS-TTHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc------------EEecCc-hhHHHHHHHHh
Confidence 567789999997 667888888776555799999999999888875322 112222 2211 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
....+|+|+-+-.- ..+..+.+.|++||.+++.-
T Consensus 224 ~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 224 GGAGVDMVVDPIGG---------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp TTSCEEEEEESCC-----------CHHHHHHTEEEEEEEEEC-
T ss_pred CCCCceEEEECCch---------hHHHHHHHhhcCCCEEEEEE
Confidence 12369999865331 24667888999999998863
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=91.86 E-value=0.7 Score=41.06 Aligned_cols=95 Identities=13% Similarity=-0.054 Sum_probs=61.3
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-C-CCCC-----
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L-QDFT----- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-~-~~~~----- 225 (280)
..++.+||-+|+|. |..+..+++.... .|+++|.++.-++.+++.-.. .++... . .++.
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~~~~~~ 256 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT------------ECVNPQDYKKPIQEVLTE 256 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc------------eEecccccchhHHHHHHH
Confidence 55678999999875 6777777765443 799999999999988754221 011111 0 1110
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (280)
...+.+|+|+-+-.- ...++.+.++|+++ |.+++.-
T Consensus 257 ~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 257 MSNGGVDFSFEVIGR--------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp HTTSCBSEEEECSCC--------HHHHHHHHHHBCTTTCEEEECS
T ss_pred HhCCCCcEEEECCCC--------HHHHHHHHHHhhcCCcEEEEec
Confidence 111368998754321 14677888999999 9988753
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.55 Score=40.99 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=61.7
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
..++.+||-.|+ |.|..+..++.....+|++++.+++.++.+++.-.. ...|..+..
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~--------------~~~d~~~~~~~~~i~~ 208 (333)
T 1wly_A 143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCH--------------HTINYSTQDFAEVVRE 208 (333)
T ss_dssp CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS--------------EEEETTTSCHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC--------------EEEECCCHHHHHHHHH
Confidence 456789999995 678777777765444799999999888888763211 111222110
Q ss_pred -CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.....+|+|+.+-.- ..++.+.++|++||.+++.-.
T Consensus 209 ~~~~~~~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 209 ITGGKGVDVVYDSIGK---------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp HHTTCCEEEEEECSCT---------TTHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCCeEEEECCcH---------HHHHHHHHhhccCCEEEEEec
Confidence 112369999865431 356778899999999987643
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=0.34 Score=42.11 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=60.4
Q ss_pred cEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEEEEc
Q 023562 160 VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIWV 236 (280)
Q Consensus 160 ~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDlV~~ 236 (280)
+||-.|+ |.|..+..+++....+|++++.|++-++.+++.-... -++ ..+.... ....+.+|+|+-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~---------vi~--~~~~~~~~~~~~~~~d~v~d 217 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANR---------ILS--RDEFAESRPLEKQLWAGAID 217 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSE---------EEE--GGGSSCCCSSCCCCEEEEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCE---------EEe--cCCHHHHHhhcCCCccEEEE
Confidence 4999996 6788888888765447999999999999998753221 011 1111111 112357999875
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+- . . ..++.+.++|+|+|.+++.-
T Consensus 218 ~~-----g--~--~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 218 TV-----G--D--KVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp SS-----C--H--HHHHHHHHTEEEEEEEEECC
T ss_pred CC-----C--c--HHHHHHHHHHhcCCEEEEEe
Confidence 42 2 2 37888899999999998863
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.27 Score=42.64 Aligned_cols=88 Identities=17% Similarity=0.106 Sum_probs=58.5
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+||-.|+| .|..+..+++....+|++++ |++-++.+++.-.. .++. |.+.+ ...+|+
T Consensus 140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~------------~v~~-d~~~v---~~g~Dv 202 (315)
T 3goh_A 140 LTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVR------------HLYR-EPSQV---TQKYFA 202 (315)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEE------------EEES-SGGGC---CSCEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCC------------EEEc-CHHHh---CCCccE
Confidence 5678899999996 37777777766444799999 99989988775322 1111 32222 368999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+-+-.- ..+..+.++|+|+|.+++.
T Consensus 203 v~d~~g~---------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 203 IFDAVNS---------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp EECC----------------TTGGGEEEEEEEEEE
T ss_pred EEECCCc---------hhHHHHHHHhcCCCEEEEE
Confidence 9865321 1225577899999999886
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=91.38 E-value=0.11 Score=45.17 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=38.6
Q ss_pred ceeEEEccCCCC-C-CCCCcEEEEEccchhhcCC--------------h----hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 213 ATNFFCVPLQDF-T-PETGRYDVIWVQWCIGHLT--------------D----DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 213 ~i~~~~~d~~~~-~-~~~~~fDlV~~~~~l~~~~--------------~----~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+.++++|..+. . .++++||+|+++--..... . ..+..+++++.++|||||.+++.
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 467889987663 2 3457999999883321110 0 12356888999999999998775
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=91.19 E-value=0.89 Score=41.67 Aligned_cols=97 Identities=11% Similarity=0.032 Sum_probs=62.7
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCC----------
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ---------- 222 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~---------- 222 (280)
..++.+||-+|+ |.|..+..+++....++++++.++.-++.+++.-... -++....|+.
T Consensus 226 ~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~---------vi~~~~~d~~~~~~~~~~~~ 296 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEA---------IIDRNAEGYRFWKDENTQDP 296 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCE---------EEETTTTTCCSEEETTEECH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcE---------EEecCcCcccccccccccch
Confidence 567789999997 5678888887765557899999999999997753220 0110001110
Q ss_pred --------CCC--CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 223 --------DFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 223 --------~~~--~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.+. .....+|+|+-+-. . ..+..+.++|++||.+++.-
T Consensus 297 ~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~--~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 297 KEWKRFGKRIRELTGGEDIDIVFEHPG-------R--ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECSC-------H--HHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCC-------c--hhHHHHHHHhhCCcEEEEEe
Confidence 000 11247999976432 2 46777888999999998753
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=91.11 E-value=0.18 Score=48.97 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=64.9
Q ss_pred CCccEEEeecCccHHHHHHHHhc----------C---CcEEEEeC---CHHHHHHHHHHcC-----------cCCCC---
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY----------F---NEVDLLEP---VSHFLDAARESLA-----------PENHM--- 206 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~----------~---~~v~~vD~---S~~~l~~A~~~~~-----------~~~~~--- 206 (280)
+..+|+|+|.|+|.......+.. . -+++.+|. +...+..+-.... .....
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45699999999998877665532 1 16888998 5555554322211 11000
Q ss_pred -----CCCCCcceeEEEccCCCC-C-CC---CCcEEEEEccch-hhcCChhhH-HHHHHHHHHcCCCCcEEEE
Q 023562 207 -----APDMHKATNFFCVPLQDF-T-PE---TGRYDVIWVQWC-IGHLTDDDF-VSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 207 -----~~~~~~~i~~~~~d~~~~-~-~~---~~~fDlV~~~~~-l~~~~~~d~-~~~l~~~~r~LkpGG~lii 267 (280)
...-...+++..+|+.+. + .. ...||+++.-.. -..-+ +-+ ..++..+.++++|||.+.-
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np-~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNP-DMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CC-TTCSHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCCh-hhhhHHHHHHHHHHhCCCCEEEe
Confidence 001123566777777543 1 11 368999987532 22212 111 5899999999999998753
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=91.03 E-value=0.88 Score=40.10 Aligned_cols=93 Identities=8% Similarity=-0.051 Sum_probs=61.2
Q ss_pred CCCC--ccEEEeec--CccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----
Q 023562 155 NNQH--LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (280)
Q Consensus 155 ~~~~--~~VLDlGc--G~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 225 (280)
..++ .+||-.|+ |.|..+..++..... +|++++.++.-++.+++.+... ...|..+..
T Consensus 156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~-------------~~~d~~~~~~~~~ 222 (357)
T 2zb4_A 156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFD-------------AAINYKKDNVAEQ 222 (357)
T ss_dssp CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCS-------------EEEETTTSCHHHH
T ss_pred CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-------------eEEecCchHHHHH
Confidence 4466 89999997 666777767665444 7999999998888877643210 111222110
Q ss_pred ---CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 ---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ---~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
...+.+|+|+.+-. . ..++.+.++|++||.+++.-
T Consensus 223 ~~~~~~~~~d~vi~~~G-------~--~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 223 LRESCPAGVDVYFDNVG-------G--NISDTVISQMNENSHIILCG 260 (357)
T ss_dssp HHHHCTTCEEEEEESCC-------H--HHHHHHHHTEEEEEEEEECC
T ss_pred HHHhcCCCCCEEEECCC-------H--HHHHHHHHHhccCcEEEEEC
Confidence 01126999986643 1 46778889999999998764
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.90 E-value=0.38 Score=41.94 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=59.3
Q ss_pred CCCCc-cEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCc
Q 023562 155 NNQHL-VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGR 230 (280)
Q Consensus 155 ~~~~~-~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~ 230 (280)
..++. +||-.|+ |.|..+..+++....+|++++.+++-++.+++.-.. .-++....+.... ....+.
T Consensus 146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~---------~~i~~~~~~~~~~~~~~~~~ 216 (328)
T 1xa0_A 146 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK---------EVLAREDVMAERIRPLDKQR 216 (328)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS---------EEEECC---------CCSCC
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCc---------EEEecCCcHHHHHHHhcCCc
Confidence 33444 8999997 677888888776444799999998888888763221 0111111110000 111246
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|+|+-+-. . ..+..+.+.|++||.+++.-
T Consensus 217 ~d~vid~~g-------~--~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 217 WAAAVDPVG-------G--RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp EEEEEECST-------T--TTHHHHHHTEEEEEEEEECS
T ss_pred ccEEEECCc-------H--HHHHHHHHhhccCCEEEEEe
Confidence 999986533 1 24667788999999998763
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.78 E-value=0.63 Score=41.58 Aligned_cols=96 Identities=15% Similarity=0.046 Sum_probs=61.4
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc------CC-CCC
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP------LQ-DFT 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d------~~-~~~ 225 (280)
..++.+||-+|+| .|..+..+++... .+|++++.|++-++.+++.-.. .++... +. .+.
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~~~~v~ 260 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD------------LTLNRRETSVEERRKAIM 260 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCc------------EEEeccccCcchHHHHHH
Confidence 3467799999966 3677777776655 4799999999999988854221 111111 00 000
Q ss_pred --CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 226 --PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 --~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.....+|+|+-+-.- . ..++.+.+.|+|+|.+++.-.
T Consensus 261 ~~~~g~g~Dvvid~~g~------~--~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 261 DITHGRGADFILEATGD------S--RALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp HHTTTSCEEEEEECSSC------T--THHHHHHHHEEEEEEEEECCC
T ss_pred HHhCCCCCcEEEECCCC------H--HHHHHHHHHHhcCCEEEEEec
Confidence 111369999865321 1 357778899999999987643
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=3.4 Score=36.35 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=72.6
Q ss_pred CccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCC--------------CCC---CCCCcceeEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPEN--------------HMA---PDMHKATNFFC 218 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~--------------~~~---~~~~~~i~~~~ 218 (280)
...|+-+|||.=.....+...+.. .+.=||. |..++.=++.+...+ ... .-...+..++.
T Consensus 91 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 458999999998887777765322 4666665 344443222222100 000 00124577888
Q ss_pred ccCCCCC----------CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 219 VPLQDFT----------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 219 ~d~~~~~----------~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
+|+.+.. +....--++++-.++.|+++++...+|+.+.+.. |+|.+++.|.+..
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p 233 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNM 233 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCT
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCC
Confidence 8987621 2234456777889999999999999999999877 5566667788753
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=0.56 Score=41.46 Aligned_cols=89 Identities=20% Similarity=0.108 Sum_probs=56.9
Q ss_pred ccEEEeecCc-cHHH-HHHH-HhcCCc-EEEEeCCHH---HHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC----
Q 023562 159 LVALDCGSGI-GRIT-KNLL-IRYFNE-VDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---- 227 (280)
Q Consensus 159 ~~VLDlGcG~-G~~s-~~l~-~~~~~~-v~~vD~S~~---~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---- 227 (280)
.+||-+|+|. |.++ ..++ +....+ |++++.+++ -++.+++.-.. .. |..+-...
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~-------------~v--~~~~~~~~~i~~ 238 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT-------------YV--DSRQTPVEDVPD 238 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCE-------------EE--ETTTSCGGGHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCc-------------cc--CCCccCHHHHHH
Confidence 7999999753 6666 6666 543334 999999988 88888753211 11 21110000
Q ss_pred -CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 228 -TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 228 -~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.+.+|+|+-.-.- . ..++.+.+.|+|+|.+++.-.
T Consensus 239 ~~gg~Dvvid~~g~------~--~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 239 VYEQMDFIYEATGF------P--KHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp HSCCEEEEEECSCC------H--HHHHHHHHHEEEEEEEEECCC
T ss_pred hCCCCCEEEECCCC------h--HHHHHHHHHHhcCCEEEEEeC
Confidence 1379999854321 1 367788899999999988643
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.39 Score=42.47 Aligned_cols=95 Identities=20% Similarity=0.141 Sum_probs=62.3
Q ss_pred CCCCccEEEee--cCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CC
Q 023562 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (280)
Q Consensus 155 ~~~~~~VLDlG--cG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 227 (280)
..++.+||-.| .|.|..+..+++....+|++++.++.-++.+++.-.. ..+...-.++. ..
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~~~~~~~~~~~~~~~~~~ 232 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAK------------RGINYRSEDFAAVIKAET 232 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC------------EEEeCCchHHHHHHHHHh
Confidence 56778999995 4567777777776545799999999999988875322 11111111110 00
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
...+|+|+.+-.- ..+..+.+.|+++|.+++.-.
T Consensus 233 ~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 233 GQGVDIILDMIGA---------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp SSCEEEEEESCCG---------GGHHHHHHTEEEEEEEEECCC
T ss_pred CCCceEEEECCCH---------HHHHHHHHHhccCCEEEEEEe
Confidence 2469999865431 256677889999999987643
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=90.40 E-value=0.84 Score=38.22 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=66.4
Q ss_pred CCccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-------
Q 023562 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (280)
Q Consensus 157 ~~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------- 226 (280)
.++++|=.|++.|. ++..|++++. +|.+++.++..++...+.+ ..++.++.+|+.+...
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~ 75 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF----------GPRVHALRSDIADLNEIAVLGAA 75 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH----------GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh----------CCcceEEEccCCCHHHHHHHHHH
Confidence 34678888876652 4455566666 5999999998887766654 2357888999877531
Q ss_pred ---CCCcEEEEEccchh------hcCChhhHHH-----------HHHHHHHcCCCCcEEEEEecc
Q 023562 227 ---ETGRYDVIWVQWCI------GHLTDDDFVS-----------FFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 227 ---~~~~fDlV~~~~~l------~~~~~~d~~~-----------~l~~~~r~LkpGG~lii~e~~ 271 (280)
..++.|+++.+-.+ ...+++++.. +.+.+...++++|.|++.-.+
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~ 140 (255)
T 4eso_A 76 AGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSV 140 (255)
T ss_dssp HHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence 01378999876332 2234444333 345566667778888776433
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=90.22 E-value=0.46 Score=43.50 Aligned_cols=44 Identities=20% Similarity=0.438 Sum_probs=35.4
Q ss_pred CccEEEeecCccHHHHHHHHhc------CCcEEEEeCCHHHHHHHHHHcC
Q 023562 158 HLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLA 201 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~------~~~v~~vD~S~~~l~~A~~~~~ 201 (280)
+.+|+|+|+|.|.++..+++.. ..+++.||+|+.+.+.-++++.
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 187 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG 187 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence 4689999999999988887531 2379999999998887777664
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.18 E-value=2 Score=37.45 Aligned_cols=97 Identities=14% Similarity=0.030 Sum_probs=60.6
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
..++.+||-.|+|. |.++..+++. +...++++|.+++-++.+++.-... .+...-.+.. .
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~------------~i~~~~~~~~~~~~~~~ 225 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQ------------TFNSSEMSAPQMQSVLR 225 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE------------EEETTTSCHHHHHHHHG
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeE------------EEeCCCCCHHHHHHhhc
Confidence 45678999999875 4455555555 4456789999999999998753321 1111101100 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
....+|+|+..-.- ...++.+.++|++||.+++.-..
T Consensus 226 ~~~g~d~v~d~~G~--------~~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 226 ELRFNQLILETAGV--------PQTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp GGCSSEEEEECSCS--------HHHHHHHHHHCCTTCEEEECCCC
T ss_pred ccCCcccccccccc--------cchhhhhhheecCCeEEEEEecc
Confidence 12357887654321 15677888999999999886443
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=89.84 E-value=0.12 Score=44.71 Aligned_cols=93 Identities=12% Similarity=-0.064 Sum_probs=59.5
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC-CCCCCCCCcE
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~f 231 (280)
..++.+||-.|+ |.|..+..+++....+|++++.++.-++.+++.-.. ..+...- .++...-..+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------------~~~~~~~~~~~~~~~~~~ 190 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE------------EAATYAEVPERAKAWGGL 190 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS------------EEEEGGGHHHHHHHTTSE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCC------------EEEECCcchhHHHHhcCc
Confidence 346789999997 567777777766444799999999988888653211 1111110 0110000469
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|+. -. . ..++.+.+.|+++|.+++.-
T Consensus 191 d~vid-~g-------~--~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 191 DLVLE-VR-------G--KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp EEEEE-CS-------C--TTHHHHHTTEEEEEEEEEC-
T ss_pred eEEEE-CC-------H--HHHHHHHHhhccCCEEEEEe
Confidence 99986 32 1 25677889999999988753
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=89.76 E-value=2.3 Score=33.32 Aligned_cols=92 Identities=15% Similarity=-0.017 Sum_probs=53.2
Q ss_pred CccEEEeecCc-cHH-HHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----C-CCC
Q 023562 158 HLVALDCGSGI-GRI-TKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----P-ETG 229 (280)
Q Consensus 158 ~~~VLDlGcG~-G~~-s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~-~~~ 229 (280)
+.+|+=+|||. |.. +..|.+. +. .|+++|.++..++.+++. .+.++.+|..+.. . .-.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~-------------g~~~~~gd~~~~~~l~~~~~~~ 104 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSE-------------GRNVISGDATDPDFWERILDTG 104 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHT-------------TCCEEECCTTCHHHHHTBCSCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHC-------------CCCEEEcCCCCHHHHHhccCCC
Confidence 45899998864 322 2333344 55 599999999888776542 1334555554321 1 124
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+|+|+.... ++.....+-...+.+.|++.++..
T Consensus 105 ~ad~vi~~~~-----~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 105 HVKLVLLAMP-----HHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp CCCEEEECCS-----SHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCEEEEeCC-----ChHHHHHHHHHHHHHCCCCEEEEE
Confidence 6888887432 122223333456667778877764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.67 E-value=1.9 Score=38.58 Aligned_cols=112 Identities=12% Similarity=0.051 Sum_probs=71.2
Q ss_pred chHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeE
Q 023562 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (280)
Q Consensus 137 ~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~ 216 (280)
...++|.+.+... ..+.+||.++.+.|.++..++.. .++.+.-|--.....+.|+..+++. ...+++
T Consensus 24 a~d~~ll~~~~~~------~~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~----~~~~~~ 90 (375)
T 4dcm_A 24 AADEYLLQQLDDT------EIRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGID----ESSVKF 90 (375)
T ss_dssp HHHHHHHHTTTTC------CCCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCC----GGGSEE
T ss_pred hHHHHHHHhhhhc------cCCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCC----ccceEe
Confidence 3345655554432 13468999999999999988644 3455544655555666777665441 123444
Q ss_pred EEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 217 ~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
... +++. ...||+|+....- + ...+...+..+...|+||+.+++.
T Consensus 91 ~~~-~~~~---~~~~~~v~~~lpk-~--~~~l~~~L~~l~~~l~~~~~i~~~ 135 (375)
T 4dcm_A 91 LDS-TADY---PQQPGVVLIKVPK-T--LALLEQQLRALRKVVTSDTRIIAG 135 (375)
T ss_dssp EET-TSCC---CSSCSEEEEECCS-C--HHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred ccc-cccc---ccCCCEEEEEcCC-C--HHHHHHHHHHHHhhCCCCCEEEEE
Confidence 432 2222 3689998875431 1 246778999999999999999876
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=89.67 E-value=0.32 Score=43.09 Aligned_cols=96 Identities=18% Similarity=0.036 Sum_probs=60.1
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCC-CCC--CCCCc
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFT--PETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~--~~~~~ 230 (280)
..++.+||-+|+|. |..+..+++....+|++++.|+.-++.+++.-.. .++...-. ++. .. +.
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~v~~~~~~~~~~~~~~-~~ 243 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD------------HYIATLEEGDWGEKYF-DT 243 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS------------EEEEGGGTSCHHHHSC-SC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCC------------EEEcCcCchHHHHHhh-cC
Confidence 55778999999854 6777777765444699999999999988874321 11111101 110 11 47
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|+|+..-.-. + ...++.+.++|++||.+++.-
T Consensus 244 ~D~vid~~g~~--~----~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 244 FDLIVVCASSL--T----DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp EEEEEECCSCS--T----TCCTTTGGGGEEEEEEEEECC
T ss_pred CCEEEECCCCC--c----HHHHHHHHHHhcCCCEEEEec
Confidence 99998653320 0 023455678999999998753
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=89.32 E-value=0.46 Score=41.42 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=60.0
Q ss_pred CCCc-cEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcE
Q 023562 156 NQHL-VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRY 231 (280)
Q Consensus 156 ~~~~-~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~f 231 (280)
.++. +||-.|+ |.|..+..+++....+|++++.+++-++.+++.-.. .-++....+.... ....+.+
T Consensus 148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~---------~v~~~~~~~~~~~~~~~~~~~ 218 (330)
T 1tt7_A 148 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS---------EVISREDVYDGTLKALSKQQW 218 (330)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS---------EEEEHHHHCSSCCCSSCCCCE
T ss_pred CCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc---------EEEECCCchHHHHHHhhcCCc
Confidence 3444 8999997 667777777765444699999998888888764221 1111111111111 1122469
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|+-+-. . ..+..+.+.|++||.+++.-
T Consensus 219 d~vid~~g-------~--~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 219 QGAVDPVG-------G--KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp EEEEESCC-------T--HHHHHHHTTEEEEEEEEECC
T ss_pred cEEEECCc-------H--HHHHHHHHhhcCCCEEEEEe
Confidence 99876533 1 35778889999999998753
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=88.71 E-value=0.95 Score=40.08 Aligned_cols=89 Identities=19% Similarity=0.096 Sum_probs=56.2
Q ss_pred CccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCH---HHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CCC----CC
Q 023562 158 HLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVS---HFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTP----ET 228 (280)
Q Consensus 158 ~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~---~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~----~~ 228 (280)
+.+||-+|+|. |..+..+++....+|++++.++ +-++.+++.-. +.. | .+ +.. ..
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga-------------~~v--~-~~~~~~~~~~~~ 244 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKT-------------NYY--N-SSNGYDKLKDSV 244 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTC-------------EEE--E-CTTCSHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCC-------------cee--c-hHHHHHHHHHhC
Confidence 78999999842 4555555554333799999988 77787765421 111 2 22 110 01
Q ss_pred CcEEEEEccchhhcCChhhHHHHH-HHHHHcCCCCcEEEEEec
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l-~~~~r~LkpGG~lii~e~ 270 (280)
+.+|+|+.+-... ..+ +.+.+.|+++|.+++.-.
T Consensus 245 ~~~d~vid~~g~~--------~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 245 GKFDVIIDATGAD--------VNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp CCEEEEEECCCCC--------THHHHHHGGGEEEEEEEEECSC
T ss_pred CCCCEEEECCCCh--------HHHHHHHHHHHhcCCEEEEEec
Confidence 4699998654311 245 788899999999987643
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.70 E-value=1.1 Score=37.90 Aligned_cols=104 Identities=20% Similarity=0.155 Sum_probs=64.4
Q ss_pred CCccEEEeecCcc---HHHHHHHHhcCCcEEEEeCC------------HHHHHHHHHHcCcCCCCCCCCCcceeEEEccC
Q 023562 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPV------------SHFLDAARESLAPENHMAPDMHKATNFFCVPL 221 (280)
Q Consensus 157 ~~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S------------~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~ 221 (280)
.+++||=-|++.| .++..|++++. +|.++|.+ ...++.+...+... ..++.++.+|+
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~D~ 80 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT-------GRKAYTAEVDV 80 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT-------TSCEEEEECCT
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhc-------CCceEEEEccC
Confidence 3457888887665 24555666666 59999987 66666655544332 34688889998
Q ss_pred CCCCC-----C-----CCcEEEEEccchhhc----CChhhHHH-----------HHHHHHHcCCCCcEEEEE
Q 023562 222 QDFTP-----E-----TGRYDVIWVQWCIGH----LTDDDFVS-----------FFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 222 ~~~~~-----~-----~~~fDlV~~~~~l~~----~~~~d~~~-----------~l~~~~r~LkpGG~lii~ 268 (280)
.+... . .++.|+++.+-.+.. .+.+++.. +++.+...|+.+|.|++.
T Consensus 81 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 81 RDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 77420 0 136899987643322 33344333 345666777888888765
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=1.4 Score=36.89 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=66.8
Q ss_pred CCccEEEeecC----ccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-----
Q 023562 157 QHLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----- 226 (280)
Q Consensus 157 ~~~~VLDlGcG----~G~-~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----- 226 (280)
.+.++|=.|++ .|. ++..|++++. +|.+++.++...+.+.+.....+ ..++.++.+|+.+...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLD------RNDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSS------SCCCEEEECCCSSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcC------CCCceEEeCCCCCHHHHHHHH
Confidence 34678888876 332 5566666676 59999988766665555443321 1268889999987531
Q ss_pred C-----CCcEEEEEccchhh----------cCChhhHH-----------HHHHHHHHcCCCCcEEEEEecc
Q 023562 227 E-----TGRYDVIWVQWCIG----------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 227 ~-----~~~fDlV~~~~~l~----------~~~~~d~~-----------~~l~~~~r~LkpGG~lii~e~~ 271 (280)
. .+++|+++.+-.+. ..+.+++. .+++.+...++++|.|++.-.+
T Consensus 79 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~ 149 (266)
T 3oig_A 79 ASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL 149 (266)
T ss_dssp HHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred HHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 0 13689888663322 23333333 2556777788888988876443
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=88.54 E-value=2.9 Score=36.43 Aligned_cols=97 Identities=18% Similarity=-0.006 Sum_probs=60.2
Q ss_pred CCCCccEEEeecCcc-HHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CC--CCCC
Q 023562 155 NNQHLVALDCGSGIG-RITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT--PETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G-~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~ 229 (280)
..++.+||=+|+|.+ ..+..+++. +..+|+++|.+++-++.+++.-... -+++...|..+ .. ....
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~---------~i~~~~~~~~~~v~~~t~g~ 231 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADV---------TINSGDVNPVDEIKKITGGL 231 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSE---------EEEC-CCCHHHHHHHHTTSS
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeE---------EEeCCCCCHHHHhhhhcCCC
Confidence 456789999999875 444444543 4558999999999888888764431 12222212111 00 1123
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+|.++....- ...+....+.|+++|.+++.
T Consensus 232 g~d~~~~~~~~--------~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 232 GVQSAIVCAVA--------RIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp CEEEEEECCSC--------HHHHHHHHHTEEEEEEEEEC
T ss_pred CceEEEEeccC--------cchhheeheeecCCceEEEE
Confidence 56766654321 15678888999999998875
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=88.35 E-value=4.4 Score=29.66 Aligned_cols=89 Identities=8% Similarity=0.005 Sum_probs=50.5
Q ss_pred CccEEEeecCccHHHHHH----HHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCC
Q 023562 158 HLVALDCGSGIGRITKNL----LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l----~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~ 229 (280)
..+|+=+|+| .++..+ .+.+. .|+++|.++..++..++.. .+.++.+|..+.. ....
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~------------~~~~~~~d~~~~~~l~~~~~~ 68 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI------------DALVINGDCTKIKTLEDAGIE 68 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------------SSEEEESCTTSHHHHHHTTTT
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhc------------CcEEEEcCCCCHHHHHHcCcc
Confidence 3578888875 444443 33344 6999999998877665432 1334555544321 1124
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
.+|+|+..-. ++.....+..+.+.+.++-+++
T Consensus 69 ~~d~vi~~~~-----~~~~~~~~~~~~~~~~~~~ii~ 100 (140)
T 1lss_A 69 DADMYIAVTG-----KEEVNLMSSLLAKSYGINKTIA 100 (140)
T ss_dssp TCSEEEECCS-----CHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCCEEEEeeC-----CchHHHHHHHHHHHcCCCEEEE
Confidence 6888887632 2233345556666688764443
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=88.35 E-value=0.96 Score=35.38 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=63.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-----CCc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-----TGR 230 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~ 230 (280)
-.+-|||+|-|+|+.--.|.+..+. .|..+|-.- .. .....+..-+++.+|+.+.-+. ..+
T Consensus 40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~----------~~---hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~ 106 (174)
T 3iht_A 40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAV----------AS---HPDSTPPEAQLILGDIRETLPATLERFGAT 106 (174)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSC----------CC---CGGGCCCGGGEEESCHHHHHHHHHHHHCSC
T ss_pred CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeee----------cc---CCCCCCchHheecccHHHHHHHHHHhcCCc
Confidence 4467999999999999999888776 898888410 00 0111234456777776553100 234
Q ss_pred EEEEEccchhhcCChhh-HHH-HHHHHHHcCCCCcEEEEEeccCCCCCC
Q 023562 231 YDVIWVQWCIGHLTDDD-FVS-FFKRAKVGLKPGGFFVLKENIARSGSE 277 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d-~~~-~l~~~~r~LkpGG~lii~e~~~~~~~~ 277 (280)
.-++..-...++-..++ ... +=--+..+|.|||+++-...+-..++.
T Consensus 107 a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl~~~~l~ 155 (174)
T 3iht_A 107 ASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRMYFEGLE 155 (174)
T ss_dssp EEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCCCCSSCE
T ss_pred eEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccCCCCcc
Confidence 55555544433321111 112 223456889999999887777555543
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=87.85 E-value=0.47 Score=48.04 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=41.1
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCc
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
....+++|+-||.|.++..|.+.|+ ..+.++|+++.+++.-+.|+..
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~ 585 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPG 585 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTT
T ss_pred CCCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC
Confidence 3456899999999999999988887 5788999999999998888754
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=87.37 E-value=1.6 Score=45.52 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=40.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
...+++|+-||.|.++..|.+.|+ ..+.++|+++.+++.-+.++..
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p~ 896 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPG 896 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCTT
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC
Confidence 456899999999999999988886 5688999999999998888754
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=87.35 E-value=3 Score=36.26 Aligned_cols=88 Identities=13% Similarity=-0.008 Sum_probs=56.6
Q ss_pred ccEEEeecCcc--HHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CCCCCCcEEEE
Q 023562 159 LVALDCGSGIG--RITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVI 234 (280)
Q Consensus 159 ~~VLDlGcG~G--~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fDlV 234 (280)
.+|.=||+|.= .++..+.+.++. .|+++|.++..++.+++.-. +.-...++.+ .. ...|+|
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~------------~~~~~~~~~~~~~---~~aDvV 98 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI------------IDEGTTSIAKVED---FSPDFV 98 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS------------CSEEESCTTGGGG---GCCSEE
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC------------cchhcCCHHHHhh---ccCCEE
Confidence 57999998752 344555555653 69999999998888765311 1112233332 11 357888
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
+.+- ++.....+++++...++||.+++
T Consensus 99 ilav-----p~~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 99 MLSS-----PVRTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp EECS-----CGGGHHHHHHHHHHHSCTTCEEE
T ss_pred EEeC-----CHHHHHHHHHHHhhccCCCcEEE
Confidence 8653 33456688899999999987654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=87.12 E-value=2.5 Score=38.32 Aligned_cols=90 Identities=9% Similarity=0.018 Sum_probs=59.6
Q ss_pred CccEEEeecCccHHHHHHH----HhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCC
Q 023562 158 HLVALDCGSGIGRITKNLL----IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~----~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~ 229 (280)
..+|+=+|+|. ++..++ +.+. .|+++|.++..++.+++. .+.++.+|..+.. ..-.
T Consensus 4 ~~~viIiG~Gr--~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~-------------g~~vi~GDat~~~~L~~agi~ 67 (413)
T 3l9w_A 4 GMRVIIAGFGR--FGQITGRLLLSSGV-KMVVLDHDPDHIETLRKF-------------GMKVFYGDATRMDLLESAGAA 67 (413)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHT-------------TCCCEESCTTCHHHHHHTTTT
T ss_pred CCeEEEECCCH--HHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhC-------------CCeEEEcCCCCHHHHHhcCCC
Confidence 35788888865 443333 3344 599999999999988753 1445778877642 2224
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
..|+|++... +++....+-...+.+.|...++..
T Consensus 68 ~A~~viv~~~-----~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 68 KAEVLINAID-----DPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp TCSEEEECCS-----SHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ccCEEEECCC-----ChHHHHHHHHHHHHhCCCCeEEEE
Confidence 6888876543 334456667777888898877764
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=86.85 E-value=3.8 Score=30.43 Aligned_cols=87 Identities=10% Similarity=0.048 Sum_probs=51.3
Q ss_pred ccEEEeecCccHHHHHH----HHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCc
Q 023562 159 LVALDCGSGIGRITKNL----LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l----~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 230 (280)
.+|+=+|||. ++..+ .+.+. .|+++|.+++.++.+++. ...++.+|..+.. .....
T Consensus 7 ~~v~I~G~G~--iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~-------------~~~~~~gd~~~~~~l~~~~~~~ 70 (141)
T 3llv_A 7 YEYIVIGSEA--AGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE-------------GFDAVIADPTDESFYRSLDLEG 70 (141)
T ss_dssp CSEEEECCSH--HHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-------------TCEEEECCTTCHHHHHHSCCTT
T ss_pred CEEEEECCCH--HHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC-------------CCcEEECCCCCHHHHHhCCccc
Confidence 5799999854 44433 33455 599999999988877653 1456777776532 11246
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+|+|+.... +++....+....+.+. ...++.
T Consensus 71 ~d~vi~~~~-----~~~~n~~~~~~a~~~~-~~~iia 101 (141)
T 3llv_A 71 VSAVLITGS-----DDEFNLKILKALRSVS-DVYAIV 101 (141)
T ss_dssp CSEEEECCS-----CHHHHHHHHHHHHHHC-CCCEEE
T ss_pred CCEEEEecC-----CHHHHHHHHHHHHHhC-CceEEE
Confidence 888876533 1233334444444455 444444
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=86.81 E-value=1.2 Score=39.06 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=61.1
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
..++.+||-+|+ |.|..+..+++....+|+++ .++.-++.+++.-.. .+. +-.++. .
T Consensus 148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~-------------~i~-~~~~~~~~~~~~~ 212 (343)
T 3gaz_A 148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGAT-------------PID-ASREPEDYAAEHT 212 (343)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSE-------------EEE-TTSCHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCC-------------Eec-cCCCHHHHHHHHh
Confidence 567789999994 56788887877655579999 889888888765321 111 111111 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
....+|+|+-+-. . ..+..+.+.|+++|.+++.-
T Consensus 213 ~~~g~D~vid~~g-------~--~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 213 AGQGFDLVYDTLG-------G--PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp TTSCEEEEEESSC-------T--HHHHHHHHHEEEEEEEEESC
T ss_pred cCCCceEEEECCC-------c--HHHHHHHHHHhcCCeEEEEc
Confidence 1246999986433 1 36777888999999998753
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=86.66 E-value=1.2 Score=40.51 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=62.2
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
..++.+||-.|+ |.|..+..+++....++++++.++.-++.+++.-.. ..++....++.+..
T Consensus 218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~---------~~i~~~~~~~~~~~~~~~~~~ 288 (447)
T 4a0s_A 218 MKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCD---------LVINRAELGITDDIADDPRRV 288 (447)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC---------CEEEHHHHTCCTTGGGCHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC---------EEEeccccccccccccccccc
Confidence 567789999996 567777777776555799999999999988764221 11111111221110
Q ss_pred -------------CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 -------------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 -------------~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.....+|+|+-+-. . ..++.+.+.|++||.+++.-
T Consensus 289 ~~~~~~~~~~v~~~~g~g~Dvvid~~G-------~--~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 289 VETGRKLAKLVVEKAGREPDIVFEHTG-------R--VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHHSSCCSEEEECSC-------H--HHHHHHHHHSCTTCEEEESC
T ss_pred chhhhHHHHHHHHHhCCCceEEEECCC-------c--hHHHHHHHHHhcCCEEEEEe
Confidence 00246899876533 1 35677788999999998864
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=86.60 E-value=2.2 Score=37.36 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=59.3
Q ss_pred CCccEEEee-c-CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CCCC
Q 023562 157 QHLVALDCG-S-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG 229 (280)
Q Consensus 157 ~~~~VLDlG-c-G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 229 (280)
++.+||-.| + |.|..+..+++....+|++++.++.-++.+++.-... ++..+ .++. ....
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~------------vi~~~-~~~~~~~~~~~~~ 216 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADI------------VLNHK-ESLLNQFKTQGIE 216 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSE------------EECTT-SCHHHHHHHHTCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcE------------EEECC-ccHHHHHHHhCCC
Confidence 677899884 3 4577777777654447999999999999998753221 11110 0110 1124
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+|+|+-+-. -...++.+.++|+++|.++..
T Consensus 217 g~Dvv~d~~g--------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 217 LVDYVFCTFN--------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp CEEEEEESSC--------HHHHHHHHHHHEEEEEEEEES
T ss_pred CccEEEECCC--------chHHHHHHHHHhccCCEEEEE
Confidence 7999986432 124678888999999999764
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=86.54 E-value=3.9 Score=34.15 Aligned_cols=92 Identities=9% Similarity=-0.030 Sum_probs=57.3
Q ss_pred ccEEEeecCccHHHHHHHHh----cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 159 LVALDCGSGIGRITKNLLIR----YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~----~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
++||=.|| |.++..+++. ++ +|++++-++.-.+.... .+++++.+|+.++. ...+|+|
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------------~~~~~~~~D~~d~~--~~~~d~v 67 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA-------------SGAEPLLWPGEEPS--LDGVTHL 67 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH-------------TTEEEEESSSSCCC--CTTCCEE
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh-------------CCCeEEEecccccc--cCCCCEE
Confidence 58999994 8887777654 34 69999988765543322 24788899998866 3578999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+..-......++....+++.+.+.-..-+.|++.
T Consensus 68 i~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~ 101 (286)
T 3ius_A 68 LISTAPDSGGDPVLAALGDQIAARAAQFRWVGYL 101 (286)
T ss_dssp EECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEE
T ss_pred EECCCccccccHHHHHHHHHHHhhcCCceEEEEe
Confidence 8765433322223345555555431222455543
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.04 E-value=2.4 Score=36.68 Aligned_cols=92 Identities=15% Similarity=-0.017 Sum_probs=57.7
Q ss_pred CCCCccEEEee--cCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CCCCCCcE
Q 023562 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlG--cG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~f 231 (280)
..++.+||-+| .|.|..+..+++....+|++++ ++.-++.+++.-.. ..+...-.+ +...-..+
T Consensus 150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~------------~~i~~~~~~~~~~~~~g~ 216 (321)
T 3tqh_A 150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAE------------QCINYHEEDFLLAISTPV 216 (321)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCS------------EEEETTTSCHHHHCCSCE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCC------------EEEeCCCcchhhhhccCC
Confidence 56778999996 4568888888876555788887 55557777764322 112111111 11111469
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+|+-+-. . ..+..+.++|+++|.++..
T Consensus 217 D~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 217 DAVIDLVG-------G--DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEEESSC-------H--HHHHHHGGGEEEEEEEEEC
T ss_pred CEEEECCC-------c--HHHHHHHHhccCCCEEEEe
Confidence 99986432 1 2237788999999999875
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=85.48 E-value=2.8 Score=35.74 Aligned_cols=106 Identities=15% Similarity=0.061 Sum_probs=65.0
Q ss_pred CCccEEEeecC----cc-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-----
Q 023562 157 QHLVALDCGSG----IG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----- 226 (280)
Q Consensus 157 ~~~~VLDlGcG----~G-~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----- 226 (280)
.++++|=.|++ .| .++..|++++. +|.+++.++...+.+++.... ..++.++.+|+.+...
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~ 100 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEE--------LGAFVAGHCDVADAASIDAVF 100 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHH--------HTCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHh--------cCCceEEECCCCCHHHHHHHH
Confidence 35678999976 33 34556666676 499999987665555544333 1246788889877420
Q ss_pred -----CCCcEEEEEccchhh----------cCChhhHH-----------HHHHHHHHcCCCCcEEEEEecc
Q 023562 227 -----ETGRYDVIWVQWCIG----------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 227 -----~~~~fDlV~~~~~l~----------~~~~~d~~-----------~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..++.|+++.+-.+. ..+++++. .+++.+...++.+|.|++.-.+
T Consensus 101 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~ 171 (293)
T 3grk_A 101 ETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYY 171 (293)
T ss_dssp HHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred HHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeh
Confidence 014789998763322 23333332 3455666777888988876443
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=85.21 E-value=0.5 Score=42.00 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=56.2
Q ss_pred CCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-c---CCCCCCCCCcE
Q 023562 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-P---LQDFTPETGRY 231 (280)
Q Consensus 157 ~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d---~~~~~~~~~~f 231 (280)
++.+||-+|+|. |..+..+++....+|++++.++.-++.+++.+... .++.. + +.+. . +.+
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~-----------~v~~~~~~~~~~~~--~-~~~ 252 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD-----------SFLVSRDQEQMQAA--A-GTL 252 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCS-----------EEEETTCHHHHHHT--T-TCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCc-----------eEEeccCHHHHHHh--h-CCC
Confidence 677899999753 55666666554447999999998888877444321 11111 0 1111 1 369
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|+.+-... ..++.+.+.|+++|.++..-
T Consensus 253 D~vid~~g~~--------~~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 253 DGIIDTVSAV--------HPLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp EEEEECCSSC--------CCSHHHHHHEEEEEEEEECC
T ss_pred CEEEECCCcH--------HHHHHHHHHHhcCCEEEEEc
Confidence 9998653311 12445667889999988753
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=85.17 E-value=0.38 Score=42.60 Aligned_cols=94 Identities=13% Similarity=0.037 Sum_probs=56.4
Q ss_pred CCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fDlV 234 (280)
++.+||-+|+|. |..+..+++....+|++++.+++-++.+++.+... .-++.... .+.+. . +.+|+|
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~--------~vi~~~~~~~~~~~--~-~g~D~v 248 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGAD--------DYVIGSDQAKMSEL--A-DSLDYV 248 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCS--------CEEETTCHHHHHHS--T-TTEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCc--------eeeccccHHHHHHh--c-CCCCEE
Confidence 678999999763 55666666553347999999998888877443321 00100000 01111 1 369999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+-.-.-. ..++.+.++|+|||.+++.-
T Consensus 249 id~~g~~--------~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 249 IDTVPVH--------HALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp EECCCSC--------CCSHHHHTTEEEEEEEEECS
T ss_pred EECCCCh--------HHHHHHHHHhccCCEEEEeC
Confidence 8653211 13455678999999998764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=84.94 E-value=0.48 Score=41.57 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=39.3
Q ss_pred cceeEEEccCCC-CC-CCCCcEEEEEccchhhcCC------------hhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 212 KATNFFCVPLQD-FT-PETGRYDVIWVQWCIGHLT------------DDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 212 ~~i~~~~~d~~~-~~-~~~~~fDlV~~~~~l~~~~------------~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
....++++|..+ +. .++++||+|++.--..... ...+..+++.+.++|+|||.+++.
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~ 83 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 83 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence 356788888654 22 4457999999873321110 014678899999999999999885
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.78 E-value=2.2 Score=35.54 Aligned_cols=106 Identities=17% Similarity=-0.010 Sum_probs=63.4
Q ss_pred CCCccEEEeecC--cc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC----
Q 023562 156 NQHLVALDCGSG--IG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---- 226 (280)
Q Consensus 156 ~~~~~VLDlGcG--~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---- 226 (280)
.++++||=.|++ .| .++..|++++. +|.+++.+....+.+++..... ..+.++.+|+.+...
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~ 82 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEF--------GSELVFPCDVADDAQIDAL 82 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHT--------TCCCEEECCTTCHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHc--------CCcEEEECCCCCHHHHHHH
Confidence 356789999965 33 23455555666 5999988866555554443331 236788899877420
Q ss_pred ------CCCcEEEEEccchhhc-----------CChhhHHH-----------HHHHHHHcCCCCcEEEEEec
Q 023562 227 ------ETGRYDVIWVQWCIGH-----------LTDDDFVS-----------FFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 227 ------~~~~fDlV~~~~~l~~-----------~~~~d~~~-----------~l~~~~r~LkpGG~lii~e~ 270 (280)
..++.|+++.+-.+.. .+.+++.. +++.+...++++|.|++.-.
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 154 (271)
T 3ek2_A 83 FASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY 154 (271)
T ss_dssp HHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence 0147899997643321 33344332 34556666777888777543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.23 E-value=1.2 Score=39.48 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=56.2
Q ss_pred CCCCccEEEee--cCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCCC
Q 023562 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (280)
Q Consensus 155 ~~~~~~VLDlG--cG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~ 229 (280)
..++.+||-.| .|.|..+..+++....+|++++ ++.-++.+++.-.. ..+..+-.++. ....
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~------------~v~~~~~~~~~~~~~~~~ 247 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGAD------------DVIDYKSGSVEEQLKSLK 247 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCS------------EEEETTSSCHHHHHHTSC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCC------------EEEECCchHHHHHHhhcC
Confidence 34678999998 4567777777766444798888 77777777543211 11111101110 0113
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+|+|+-+-.- +. ..+....++|++||.+++.
T Consensus 248 g~D~vid~~g~-----~~--~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 248 PFDFILDNVGG-----ST--ETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp CBSEEEESSCT-----TH--HHHGGGGBCSSSCCEEEES
T ss_pred CCCEEEECCCC-----hh--hhhHHHHHhhcCCcEEEEe
Confidence 68998755321 11 2456677899999999875
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=84.20 E-value=2.3 Score=35.45 Aligned_cols=105 Identities=11% Similarity=-0.017 Sum_probs=62.4
Q ss_pred CCccEEEeecCccH---HHHHHHHhcCCcEEEE-eCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-----C
Q 023562 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLL-EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----E 227 (280)
Q Consensus 157 ~~~~VLDlGcG~G~---~s~~l~~~~~~~v~~v-D~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~ 227 (280)
.++++|=.|++.|. ++..|++++. +|.++ +.++...+...+.+... ..++.++.+|+.+... .
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~ 78 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKL-------GRSALAIKADLTNAAEVEAAIS 78 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTT-------TSCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhc-------CCceEEEEcCCCCHHHHHHHHH
Confidence 34678888877662 4555666666 48777 66666666655544332 3457888999887430 0
Q ss_pred -----CCcEEEEEccchh-------hcCChhhHH-----------HHHHHHHHcCCCCcEEEEEe
Q 023562 228 -----TGRYDVIWVQWCI-------GHLTDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 -----~~~fDlV~~~~~l-------~~~~~~d~~-----------~~l~~~~r~LkpGG~lii~e 269 (280)
-++.|+++.+-.. ...+++++. .+.+.+...++++|.|++.-
T Consensus 79 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 79 AAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp HHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 1378999876322 123333332 23445566666778777653
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=83.59 E-value=5.5 Score=33.18 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=55.5
Q ss_pred CccEEEeecCc-cH-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 158 HLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~-G~-~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
..+|.=+|||. |. ++..+.+.++..|.++|.+++.++.+.+... +.. ..+..+.. ...|+|+
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g------------~~~-~~~~~~~~---~~~Dvvi 73 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVE------------AEY-TTDLAEVN---PYAKLYI 73 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTT------------CEE-ESCGGGSC---SCCSEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC------------Cce-eCCHHHHh---cCCCEEE
Confidence 35799999974 32 3344455555448999999988877665432 111 22332221 3578887
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
..-. +.....+++.+...+++|..++-.
T Consensus 74 ~av~-----~~~~~~v~~~l~~~~~~~~ivv~~ 101 (266)
T 3d1l_A 74 VSLK-----DSAFAELLQGIVEGKREEALMVHT 101 (266)
T ss_dssp ECCC-----HHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred EecC-----HHHHHHHHHHHHhhcCCCcEEEEC
Confidence 7533 334567888888888888766544
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=83.58 E-value=1.6 Score=36.92 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=66.9
Q ss_pred CCccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
+++.+|--|++.|. ++..|++.+. +|..+|.+++.++.+.+.+... +.++.++.+|+.+..
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~-------g~~~~~~~~Dv~~~~~v~~~~~~ 79 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRK-------GYDAHGVAFDVTDELAIEAAFSK 79 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHT-------TCCEEECCCCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc-------CCcEEEEEeeCCCHHHHHHHHHH
Confidence 35577777777663 4556666676 5999999999888776666543 345778888887642
Q ss_pred --CCCCcEEEEEccch------hhcCChhhHHHHH-----------HHHHHcC---CCCcEEEEEecc
Q 023562 226 --PETGRYDVIWVQWC------IGHLTDDDFVSFF-----------KRAKVGL---KPGGFFVLKENI 271 (280)
Q Consensus 226 --~~~~~fDlV~~~~~------l~~~~~~d~~~~l-----------~~~~r~L---kpGG~lii~e~~ 271 (280)
..-++.|+++.+-. +..+++++++..+ +.+...| +.+|.|+..--+
T Consensus 80 ~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~ 147 (255)
T 4g81_D 80 LDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSL 147 (255)
T ss_dssp HHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred HHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeeh
Confidence 11257899987632 3344545544332 3444444 256877765433
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=83.09 E-value=3.5 Score=35.06 Aligned_cols=105 Identities=12% Similarity=0.095 Sum_probs=63.0
Q ss_pred CCccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHH-HHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC------
Q 023562 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSH-FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------ 226 (280)
Q Consensus 157 ~~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~-~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------ 226 (280)
++++||=.|++.| .++..|++++. +|.+++.++. ..+...+..... ..++.++.+|+.+...
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~ 117 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKE-------GVKCVLLPGDLSDEQHCKDIVQ 117 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTT-------TCCEEEEESCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhc-------CCcEEEEECCCCCHHHHHHHHH
Confidence 3467888887665 24455566666 5999987754 344444433322 3468888999877420
Q ss_pred ----CCCcEEEEEccch-------hhcCChhhHH-----------HHHHHHHHcCCCCcEEEEEe
Q 023562 227 ----ETGRYDVIWVQWC-------IGHLTDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 227 ----~~~~fDlV~~~~~-------l~~~~~~d~~-----------~~l~~~~r~LkpGG~lii~e 269 (280)
..++.|+++.+-. +..++.+++. .+++.+...++.+|.|++.-
T Consensus 118 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 118 ETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 0136899986632 2223434433 34556677788889887653
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=82.49 E-value=4.6 Score=35.67 Aligned_cols=93 Identities=13% Similarity=0.026 Sum_probs=58.9
Q ss_pred CCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CCC
Q 023562 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (280)
Q Consensus 156 ~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~ 228 (280)
.++.+||=+|+ |.|..+..+++....+|+++. |+.-++.+++.-.. .++...-.++. ..+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~------------~vi~~~~~~~~~~v~~~t~ 229 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAE------------EVFDYRAPNLAQTIRTYTK 229 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCS------------EEEETTSTTHHHHHHHHTT
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCc------------EEEECCCchHHHHHHHHcc
Confidence 56789999998 378888888876555688775 88888888764321 11211111110 112
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcC-CCCcEEEEEe
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~L-kpGG~lii~e 269 (280)
+.+|+|+-+-.- . ..+..+.+.| ++||.+++.-
T Consensus 230 g~~d~v~d~~g~------~--~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 230 NNLRYALDCITN------V--ESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp TCCCEEEESSCS------H--HHHHHHHHHSCTTCEEEEESS
T ss_pred CCccEEEECCCc------h--HHHHHHHHHhhcCCCEEEEEe
Confidence 458998854321 1 4567777888 6999998753
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=80.96 E-value=1.4 Score=36.61 Aligned_cols=102 Identities=22% Similarity=0.101 Sum_probs=59.2
Q ss_pred CccEEEeecCccHHHH----HHHH-hcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-----C
Q 023562 158 HLVALDCGSGIGRITK----NLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----E 227 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~----~l~~-~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~ 227 (280)
+.+||=.|+. |.++. .|++ ++. +|.+++.++..++...+.+... ..++.++.+|+.+... .
T Consensus 4 ~k~vlITGas-ggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dl~~~~~~~~~~~ 74 (276)
T 1wma_A 4 IHVALVTGGN-KGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAE-------GLSPRFHQLDIDDLQSIRALRD 74 (276)
T ss_dssp CCEEEESSCS-SHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHT-------TCCCEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhc-------CCeeEEEECCCCCHHHHHHHHH
Confidence 4567777754 44444 4444 455 6999999887766655554332 2357888899876420 0
Q ss_pred -----CCcEEEEEccchhhcC-----C-hhhHH-----------HHHHHHHHcCCCCcEEEEE
Q 023562 228 -----TGRYDVIWVQWCIGHL-----T-DDDFV-----------SFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 228 -----~~~fDlV~~~~~l~~~-----~-~~d~~-----------~~l~~~~r~LkpGG~lii~ 268 (280)
.+++|+|+.+-..... + .+++. .+++.+...++++|.|++.
T Consensus 75 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~ 137 (276)
T 1wma_A 75 FLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 137 (276)
T ss_dssp HHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence 1278999866332211 1 12222 3445566666777887775
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=80.03 E-value=5.3 Score=33.99 Aligned_cols=102 Identities=22% Similarity=0.252 Sum_probs=66.0
Q ss_pred CCccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
+++.+|--|++.|. ++..|++.+. +|..+|.+++.++.+.+.+. .++.++.+|+.+..
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g----------~~~~~~~~Dv~~~~~v~~~~~~ 96 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIG----------GGAVGIQADSANLAELDRLYEK 96 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC----------TTCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC----------CCeEEEEecCCCHHHHHHHHHH
Confidence 34577877877763 4566666677 59999999998887766553 34667888887642
Q ss_pred --CCCCcEEEEEccch------hhcCChhhHHHH-----------HHHHHHcCCCCcEEEEEe
Q 023562 226 --PETGRYDVIWVQWC------IGHLTDDDFVSF-----------FKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 --~~~~~fDlV~~~~~------l~~~~~~d~~~~-----------l~~~~r~LkpGG~lii~e 269 (280)
..-++.|+++.+-. +.-+++++++.. .+.+...|+.+|.|+..-
T Consensus 97 ~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 97 VKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp HHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 01257999987632 333444444333 345556677888776653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 280 | ||||
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 9e-40 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 3e-20 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 4e-06 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 6e-05 | |
| d1mjfa_ | 276 | c.66.1.17 (A:) Putative spermidine synthetase PF01 | 1e-04 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 2e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-04 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 2e-04 | |
| d2o07a1 | 285 | c.66.1.17 (A:16-300) Spermidine synthase {Human (H | 8e-04 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 0.001 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 0.001 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.001 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.002 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 0.003 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 137 bits (344), Expect = 9e-40
Identities = 77/216 (35%), Positives = 110/216 (50%), Gaps = 18/216 (8%)
Query: 62 KHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVD 121
K S + +SG D++GK +++ +EMW+ ++ D + + WY + + YW V A+V
Sbjct: 8 KEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVS 65
Query: 122 GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181
GVLGG +V++VDI+GS F+ L ALDCG+GIGRITKNLL + +
Sbjct: 66 GVLGGMDHVHDVDIEGSRNFIASLPGHGTSR--------ALDCGAGIGRITKNLLTKLYA 117
Query: 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241
DLLEPV H L+ E F ++ T YD+I +QW
Sbjct: 118 TTDLLEPVKHMLE--------EAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169
Query: 242 HLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGSE 277
+LTD DFV FFK + L P G+ KEN +
Sbjct: 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF 205
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.5 bits (207), Expect = 3e-20
Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 9/176 (5%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L +
Sbjct: 6 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGT---S 62
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F EVD+++ FL + ++ + + N+FC
Sbjct: 63 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLV------QAKTYLGEEGKRVRNYFCC 116
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
LQDFTPE YDVIW+QW IGHLTD F +R K L+P G V+K+N+A+ G
Sbjct: 117 GLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG 172
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 44.2 bits (103), Expect = 4e-06
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 8/107 (7%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR + L ++ D S+A + +
Sbjct: 34 TLDLGCGNGRNSLYLAANGYDV--------TAWDKNPASMANLERIKAAEGLDNLQTDLV 85
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+ G YD I + L + KPGG+ ++
Sbjct: 86 DLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLI 132
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.5 bits (96), Expect = 6e-05
Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 8/113 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL--APENHMAPDMHKATNFFCV 219
LD G G + L+ V ++ L A + + +
Sbjct: 61 LDVACGTGVDSIMLV-EEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTD-----DDFVSFFKRAKVGLKPGGFFVL 267
+D G VI + HL D + K ++PGG V+
Sbjct: 120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 40.1 bits (93), Expect = 1e-04
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 6/122 (4%)
Query: 151 PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM 210
+ + L G G G + +L +EV ++E + +++ + +N + M
Sbjct: 66 AMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAM 125
Query: 211 HKA----TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVS--FFKRAKVGLKPGGF 264
+F +DVI S F++ L G
Sbjct: 126 LNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGI 185
Query: 265 FV 266
+V
Sbjct: 186 YV 187
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 2e-04
Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 8/108 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
L+ G G+ + +E ++E R+ + H +
Sbjct: 58 LEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA--- 114
Query: 222 QDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFV 266
T G +D I F A LKPGG
Sbjct: 115 --PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 160
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 39.2 bits (90), Expect = 2e-04
Identities = 19/117 (16%), Positives = 32/117 (27%), Gaps = 11/117 (9%)
Query: 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213
+ N+ + LD +G G + + +V + L + +
Sbjct: 14 KGNEEV--LDVATGGGHVAN-AFAPFVKKVVAFDLTEDIL--------KVARAFIEGNGH 62
Query: 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270
V V I + SF A LK GG +L +N
Sbjct: 63 QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN 119
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 12/125 (9%)
Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFN-------EVDLLEPVSHFLDAARESLAPENH 205
+ L G G G I +L + +++EP + + +E +A ++
Sbjct: 36 GDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN 95
Query: 206 MAPDMHKATNFFCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG 262
+ Q E ++D I + + ++ D + K L
Sbjct: 96 LENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTN 153
Query: 263 GFFVL 267
++
Sbjct: 154 AKMLI 158
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 8e-04
Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 35/194 (18%)
Query: 102 KTQWYREGISYWEGVEAS--VDGVL---------------GGFGNVNEVDIKGSEAFLQM 144
+ W+RE S W G S V+ +L +GNV +D +Q
Sbjct: 2 REGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLD-----GVIQC 56
Query: 145 LLSDRFPNARNNQHLV---------ALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLD 194
D F +L L G G G + + ++ V E +
Sbjct: 57 TERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQ 116
Query: 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC--IGHLTDDDFVSFF 252
+++ L P + K T + +DVI +G S++
Sbjct: 117 VSKKFL-PGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYY 175
Query: 253 KRAKVGLKPGGFFV 266
+ K LK G
Sbjct: 176 QLMKTALKEDGVLC 189
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 37.6 bits (86), Expect = 0.001
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 9/108 (8%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G+G G Y E ++ ++ + + F
Sbjct: 21 LDIGAGAGHTAL-AFSPYVQECIGVDATKEMVEV------ASSFAQEKGVENVRFQQGTA 73
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
+ +D+I ++ H D + LK G F+L +
Sbjct: 74 ESLPFPDDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVD 119
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.0 bits (84), Expect = 0.001
Identities = 13/64 (20%), Positives = 21/64 (32%)
Query: 204 NHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263
A F + + E +D + I H + FK + LKP G
Sbjct: 76 REYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG 135
Query: 264 FFVL 267
F++
Sbjct: 136 KFIM 139
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.4 bits (86), Expect = 0.001
Identities = 16/123 (13%), Positives = 31/123 (25%), Gaps = 5/123 (4%)
Query: 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218
+D GSG+G + E + D N
Sbjct: 219 TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 278
Query: 219 VPLQDFTPETGRYDVIW----VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274
L+ + R + V L D+D ++ K G + +++
Sbjct: 279 FSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSL 338
Query: 275 GSE 277
+
Sbjct: 339 TYQ 341
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 36.8 bits (84), Expect = 0.002
Identities = 20/139 (14%), Positives = 48/139 (34%), Gaps = 11/139 (7%)
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190
N D+ ++ ++ L++ + + + +D G G G + L+
Sbjct: 4 NTRDLYYNDDYVSFLVNTVWKITKP---VHIVDYGCGYGYLGLVLMPLLPEGSKY----- 55
Query: 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVS 250
+D+ LA + + + F +YD+ + H+T + +
Sbjct: 56 TGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELNDKYDIAICHAFLLHMTTPE--T 112
Query: 251 FFKRAKVGLKPGGFFVLKE 269
++ +K GG + E
Sbjct: 113 MLQKMIHSVKKGGKIICFE 131
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.003
Identities = 22/159 (13%), Positives = 42/159 (26%), Gaps = 35/159 (22%)
Query: 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200
+ L+ F +D GSG +F ++ + + + L
Sbjct: 39 WKLRCLAQTFATGEV-SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWL 97
Query: 201 APENHMAPDMHKATNFFCV-------------------------------PLQDFTPETG 229
E A + + C+ PL +P
Sbjct: 98 QEE-PGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPL 156
Query: 230 RYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFV 266
D + +C+ ++ D F L+PGG +
Sbjct: 157 PADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL 195
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 280 | |||
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 100.0 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.95 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.88 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.88 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.88 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.87 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.86 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.84 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.84 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.83 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.82 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.82 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.82 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.8 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.8 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.8 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.79 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.79 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.78 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.77 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.75 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.74 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.7 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.7 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.69 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.69 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.68 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.67 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.65 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.65 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.65 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.64 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.63 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.6 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.58 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.57 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.56 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.54 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.54 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.53 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.52 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.52 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.49 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.49 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.49 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.48 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.45 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.4 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.37 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.37 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.35 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.35 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.34 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.33 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.31 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.26 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.24 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.24 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.24 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.17 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.17 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.17 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.15 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.14 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.14 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.08 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.08 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.06 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.04 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.03 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.98 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.97 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.94 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.92 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.77 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.77 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.75 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.72 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.67 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.65 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.65 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.63 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.63 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.62 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.54 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.52 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.41 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.39 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.29 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.22 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.2 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.07 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.07 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.04 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.98 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.93 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.92 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.9 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.56 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.83 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.81 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.77 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.76 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.71 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.69 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.52 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.28 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.27 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.13 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.92 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.89 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.79 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.62 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.58 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.49 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.4 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.83 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.63 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.58 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.48 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.43 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 94.36 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 94.23 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.89 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.87 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.83 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.74 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.69 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.64 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.36 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.29 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.18 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.06 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.76 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 92.71 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.2 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.07 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.2 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.55 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 90.34 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 89.59 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.01 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 87.03 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 86.9 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 86.7 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 86.69 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 86.62 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 86.61 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 86.42 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 86.33 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 85.64 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 84.98 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 84.75 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 84.7 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 84.59 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 83.55 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 83.38 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 81.55 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 80.92 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 80.05 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 80.01 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=6e-35 Score=252.18 Aligned_cols=191 Identities=41% Similarity=0.776 Sum_probs=167.1
Q ss_pred CCcccccccccCCCcccccHHHHHHHhhcCCcccchhhhHHHHHHHhhhhcccccccccccCccccccccccchHHHHHH
Q 023562 65 ESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQM 144 (280)
Q Consensus 65 ~~~~~~~~~~~~~g~~~~~~~e~w~~~l~~~~~~~~~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 144 (280)
++..+.+.|.|+.|++|.+++++|++.+..+.. ....+||.++.+||+.++.+.++++++|.+++..++.....+|..
T Consensus 11 ~~~~~~~~g~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~~yW~~~~~t~~~mlgg~~~~~~~d~~~s~~fl~~ 88 (254)
T d1xtpa_ 11 SSRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIAS 88 (254)
T ss_dssp --CCCCCCEEETTSCEESCHHHHHHHHSCSCTT--CTTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHT
T ss_pred ccccccccccCCCCCEeccHHHHHHHHhccccc--ccchhhhhchhhhhhcCchhcccccCCccccchhhHHHHHHHHhh
Confidence 366677999999999999999999999876544 455679999999999999999999999998888787777766654
Q ss_pred HHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC
Q 023562 145 LLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (280)
Q Consensus 145 ~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 224 (280)
+. ..+..+|||+|||+|+++..|+.+++..|++||+|+.|++.|++++.. ..+++|+++|++++
T Consensus 89 l~--------~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~--------~~~~~~~~~d~~~~ 152 (254)
T d1xtpa_ 89 LP--------GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETA 152 (254)
T ss_dssp ST--------TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGGGC
T ss_pred CC--------CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc--------cccceeEEcccccc
Confidence 32 346679999999999999999988888899999999999999999865 35689999999999
Q ss_pred CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 225 TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 225 ~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
++++++||+|+++++++|++++++.++++++.++|+|||+|+|.|++..
T Consensus 153 ~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~ 201 (254)
T d1xtpa_ 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST 201 (254)
T ss_dssp CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred ccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 8888899999999999999988899999999999999999999999865
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.4e-29 Score=211.33 Aligned_cols=166 Identities=45% Similarity=0.910 Sum_probs=141.5
Q ss_pred hhhHHHHHHHhhhhcccccccccccCccccccccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcC
Q 023562 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180 (280)
Q Consensus 101 ~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~ 180 (280)
...+||+++.+||+.++.++++++++|..++..++.....++...+..... ..+..+|||+|||+|.++..++++++
T Consensus 7 ~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~ 83 (222)
T d2ex4a1 7 DEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN---KTGTSCALDCGAGIGRITKRLLLPLF 83 (222)
T ss_dssp CHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTC
T ss_pred hHHHHHHHHHHHHhCCCccccccccCccccchhhHHHHHHHHHHHHHhccC---CCCCCEEEEeccCCCHhhHHHHHhcC
Confidence 456899999999999999999999999888777777767777776654433 44567999999999999998887878
Q ss_pred CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCC
Q 023562 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK 260 (280)
Q Consensus 181 ~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~Lk 260 (280)
.+|+++|+|+.||+.|++++...+. .+++|+++|++++++++++||+|++.++++|++++++..++++++++||
T Consensus 84 ~~v~~vD~s~~~l~~ak~~~~~~~~------~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk 157 (222)
T d2ex4a1 84 REVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLR 157 (222)
T ss_dssp SEEEEEESCHHHHHHHHHHTGGGGG------GEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE
T ss_pred CEEEEeecCHHHhhccccccccccc------cccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcC
Confidence 7899999999999999999876432 4679999999999887789999999999999998888899999999999
Q ss_pred CCcEEEEEeccCCCC
Q 023562 261 PGGFFVLKENIARSG 275 (280)
Q Consensus 261 pGG~lii~e~~~~~~ 275 (280)
|||.+++.+++...+
T Consensus 158 ~~G~~~i~~~~~~~~ 172 (222)
T d2ex4a1 158 PNGIIVIKDNMAQEG 172 (222)
T ss_dssp EEEEEEEEEEEBSSS
T ss_pred CcceEEEEEcccccc
Confidence 999999999886554
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.88 E-value=1.3e-22 Score=176.50 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=101.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||||||+|.++..++++...+|+|+|+|+.|++.|+++....++ ..+++|.++|+.++++++++||+|
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl-----~~~v~~~~~d~~~l~~~~~sfD~V 139 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFLEIPCEDNSYDFI 139 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccc-----cccccccccccccccccccccchh
Confidence 567889999999999999999887555799999999999999999877655 467999999999999888999999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
++..+++|++ +...+++++.++|||||++++.+++...
T Consensus 140 ~~~~~l~h~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~ 177 (282)
T d2o57a1 140 WSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKED 177 (282)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred hccchhhhcc--CHHHHHHHHHHhcCCCcEEEEEEeecCC
Confidence 9999999998 6679999999999999999999887543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=8.5e-23 Score=170.81 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=102.5
Q ss_pred chHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeE
Q 023562 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (280)
Q Consensus 137 ~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~ 216 (280)
.....+..++.+.++ +..+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++.... ..++.+
T Consensus 22 ~~~~~~~~~~~~~l~-----~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~-------~~~~~~ 88 (226)
T d1ve3a1 22 SRIETLEPLLMKYMK-----KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR-------ESNVEF 88 (226)
T ss_dssp HHHHHHHHHHHHSCC-----SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCCEE
T ss_pred HHHHHHHHHHHHhcC-----CCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccc-------cccccc
Confidence 333555666655433 557999999999999999998765 6999999999999999987654 345788
Q ss_pred EEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 217 ~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+++|+.+++.++++||+|+|.++++|+++.++..+++++.++|||||.+++..+
T Consensus 89 ~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 89 IVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp EECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 999999998888999999999999999988899999999999999999988754
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=1.1e-22 Score=172.16 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=98.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.+++.+|||+|||+|.++..+++++. +|+|+|+|+.|++.|++++...++ .++.+.++|++++++++++||+|
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~v 86 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTAESLPFPDDSFDII 86 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBTTBCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccc------cccccccccccccccccccccee
Confidence 67889999999999999999988765 699999999999999999876533 46999999999999888999999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+|..+++|++ +...+++++.++|||||++++.++..
T Consensus 87 ~~~~~l~~~~--d~~~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 87 TCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred eeeceeeccc--CHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence 9999999998 67799999999999999999988754
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.87 E-value=1.9e-22 Score=169.71 Aligned_cols=109 Identities=19% Similarity=0.253 Sum_probs=96.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.+++.+|||||||+|.++..+++++. +|+|+|+|+.|++.|++++...+. .+++|.++|++++++++++||+|
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~------~~i~~~~~d~~~l~~~~~~fD~v 85 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDAEQMPFTDERFHIV 85 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC-CCCSCTTCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccc------ccccccccccccccccccccccc
Confidence 56778999999999999999987765 699999999999999998876543 57999999999999888999999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+|..+++|++ +...+++++.++|||||++++.++..
T Consensus 86 ~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 86 TCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred cccccccccC--CHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9999999998 67799999999999999999988754
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=2.3e-22 Score=171.34 Aligned_cols=118 Identities=21% Similarity=0.309 Sum_probs=99.9
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
.++..++.... ..++.+|||+|||+|..+..|++++. +|+|+|+|+.||+.|++++... ..++++.++
T Consensus 28 ~~~~~~~~~~~----~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~-------~~~i~~~~~ 95 (251)
T d1wzna1 28 DFVEEIFKEDA----KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKER-------NLKIEFLQG 95 (251)
T ss_dssp HHHHHHHHHTC----SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCCEEEES
T ss_pred HHHHHHHHHhc----CCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccc-------cccchheeh
Confidence 45666665432 34567899999999999999998877 5999999999999999998764 346999999
Q ss_pred cCCCCCCCCCcEEEEEcc-chhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 220 PLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 220 d~~~~~~~~~~fDlV~~~-~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|+++++++ ++||+|+|. .+++|++.+++..+|++++++|||||++++..+
T Consensus 96 d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 96 DVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp CGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 99999877 689999987 678898888899999999999999999998643
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=3.2e-21 Score=164.21 Aligned_cols=110 Identities=17% Similarity=0.107 Sum_probs=97.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||||||+|..+..++++...+|+|||+|+.|++.|+++....++ ..+++|..+|+.++. .+++||+|
T Consensus 31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl-----~~~v~~~~~d~~~~~-~~~~fD~v 104 (245)
T d1nkva_ 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFIHNDAAGYV-ANEKCDVA 104 (245)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCCTTCC-CSSCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhc-----cccchhhhhHHhhcc-ccCceeEE
Confidence 667889999999999999999887555799999999999999999877655 467999999999985 45899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++..+++|++ ++..+++++.++|||||++++.+...
T Consensus 105 ~~~~~~~~~~--d~~~~l~~~~r~LkPGG~l~i~~~~~ 140 (245)
T d1nkva_ 105 ACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYW 140 (245)
T ss_dssp EEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred EEEehhhccC--CHHHHHHHHHHHcCcCcEEEEEeccc
Confidence 9999999998 66799999999999999999987653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=3.9e-21 Score=162.55 Aligned_cols=112 Identities=21% Similarity=0.334 Sum_probs=92.7
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~ 218 (280)
..++..++.+.+ .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++... .++.
T Consensus 29 ~~~~~~~~~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~------------~~~~ 90 (246)
T d2avna1 29 HRLIGSFLEEYL-----KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK------------NVVE 90 (246)
T ss_dssp HHHHHHHHHHHC-----CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS------------CEEE
T ss_pred HHHHHHHHHHhc-----CCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccccc------------cccc
Confidence 345555555443 3567999999999999999987766 699999999999999987532 3578
Q ss_pred ccCCCCCCCCCcEEEEEcc-chhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 219 VPLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 219 ~d~~~~~~~~~~fDlV~~~-~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++++++++++++||+|++. .+++|++ +...+++++.++|||||+++++.+
T Consensus 91 ~~~~~l~~~~~~fD~ii~~~~~~~~~~--d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 91 AKAEDLPFPSGAFEAVLALGDVLSYVE--NKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CCTTSCCSCTTCEEEEEECSSHHHHCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccccceeeecchhhhhh--hHHHHHHHHHhhcCcCcEEEEEEC
Confidence 8999998888999999986 6899998 556899999999999999999753
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.83 E-value=1.2e-20 Score=155.68 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=95.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++++|||||||+|..+..++++++ +|+++|+|+.|++.++++....++ .++.+...|+..+.++ ++||+|++
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~d~~~~~~~-~~fD~I~~ 101 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGL------DNLQTDLVDLNTLTFD-GEYDFILS 101 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC------TTEEEEECCTTTCCCC-CCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccc------cchhhhheeccccccc-ccccEEEE
Confidence 456999999999999999998887 599999999999999988776543 4688999999988765 79999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..+++|++++++..+++++.++|+|||++++....
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999999889999999999999999999997654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=3.2e-20 Score=161.22 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=96.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||||||+|.++..++++...+|+|+|+|+.+++.|++++...++ ..++.+...|..+++ ++||.|
T Consensus 50 l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l-----~~~~~~~~~d~~~~~---~~fD~i 121 (280)
T d2fk8a1 50 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----NRSRQVLLQGWEDFA---EPVDRI 121 (280)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhcc-----ccchhhhhhhhhhhc---cchhhh
Confidence 778899999999999999998887666899999999999999999888665 456777777776653 789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++..+++|+++.++..+++++.++|||||.+++.+.+.
T Consensus 122 ~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~ 159 (280)
T d2fk8a1 122 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 159 (280)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred hHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeec
Confidence 99999999998888999999999999999999976544
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.82 E-value=6.1e-20 Score=154.21 Aligned_cols=111 Identities=14% Similarity=0.260 Sum_probs=94.2
Q ss_pred CCCccEEEeecCccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~---~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
.++.+|||+|||+|..+..+++.. ..+|+|+|+|+.||+.|+++.+..+. ..++.+..+|+.+++. ..+|
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~-----~~~~~~~~~d~~~~~~--~~~d 110 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHVEI--KNAS 110 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC-----SSCEEEECSCTTTCCC--CSEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc-----cchhhhccchhhcccc--ccce
Confidence 356799999999999999888752 22799999999999999998765433 4567788888877653 5899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
+|+++.+++|+++++...++++++++|||||.+++.|....
T Consensus 111 ~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 151 (225)
T d1im8a_ 111 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 151 (225)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred eeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccc
Confidence 99999999999988999999999999999999999987643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.82 E-value=1.3e-20 Score=160.31 Aligned_cols=115 Identities=20% Similarity=0.323 Sum_probs=95.4
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
.++...+... ..++.+|||+|||+|.++..+++++. +|+|+|+|+.||+.|+++.... ..+++++++
T Consensus 25 ~~~~~~~~~~-----~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~-------~~~v~~~~~ 91 (246)
T d1y8ca_ 25 DFIIEKCVEN-----NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQ-------GLKPRLACQ 91 (246)
T ss_dssp HHHHHHHHTT-----TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHT-------TCCCEEECC
T ss_pred HHHHHHHHHh-----CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhcccccccc-------Cccceeecc
Confidence 4555555432 23457899999999999999998877 5999999999999999987654 346899999
Q ss_pred cCCCCCCCCCcEEEEEcc-chhhcCC-hhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 220 PLQDFTPETGRYDVIWVQ-WCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 220 d~~~~~~~~~~fDlV~~~-~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+.+++++ ++||+|+|. .+++|+. .+++..++++++++|+|||.|++.
T Consensus 92 d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 92 DISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred chhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 99998765 799999986 6788874 468889999999999999999974
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.80 E-value=9.2e-20 Score=158.42 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=93.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..++..... +|+|+|+|+.|++.|+++.... +.+++|.+.|+.+++++ ++||
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-------~~~~~f~~~d~~~~~~~-~~fD 96 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-------PYDSEFLEGDATEIELN-DKYD 96 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-------SSEEEEEESCTTTCCCS-SCEE
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-------ccccccccccccccccc-CCce
Confidence 457789999999999999988765432 6999999999999999998764 34789999999998765 6899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|+++.+++|++ +...+++++.++|||||.+++.|..
T Consensus 97 ~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 97 IAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp EEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEEehhhhcCC--CHHHHHHHHHHHcCcCcEEEEEECC
Confidence 999999999999 5669999999999999999998853
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.80 E-value=1.1e-19 Score=155.40 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=92.5
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV 234 (280)
.++.+|||+|||+|..+..+++.++.+|+|+|+|+.||+.|+++....+. ..++.|.++|+...+. ..++||+|
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~-----~~~v~f~~~D~~~~~~~~~~~fD~V 97 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDSYGRHMDLGKEFDVI 97 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC-----CcceEEEEcchhhhcccccccceEE
Confidence 46689999999999999999888877899999999999999998765432 4579999999976654 34689999
Q ss_pred EccchhhcCC--hhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~--~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|.+++||+. .+++..+++++.++|||||+++++
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 9999999973 356789999999999999999986
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.80 E-value=1e-19 Score=148.49 Aligned_cols=117 Identities=10% Similarity=-0.030 Sum_probs=96.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCC------CCCCcceeEEEccCCCCCCC-
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA------PDMHKATNFFCVPLQDFTPE- 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~------~~~~~~i~~~~~d~~~~~~~- 227 (280)
..++.+|||+|||+|..+..|+++|+. |+|+|+|+.||+.|+++.+..+... .......+|+++|+.+++..
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHcCCc-eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 557889999999999999999999885 9999999999999999886532110 00123567889998887632
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
..+||+|++..+++|+++++...+++++.++|||||.+++.....
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 368999999999999999889999999999999999988875543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=3.9e-19 Score=154.45 Aligned_cols=127 Identities=16% Similarity=0.182 Sum_probs=106.0
Q ss_pred cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc
Q 023562 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (280)
Q Consensus 134 ~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~ 213 (280)
.+........+.+.+.+. ..++.+|||||||+|..+.++++....+|+|+++|+.+++.|++++...++ ..+
T Consensus 42 tL~eAQ~~k~~~~~~~l~---l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~-----~~~ 113 (285)
T d1kpga_ 42 TLQEAQIAKIDLALGKLG---LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----LRS 113 (285)
T ss_dssp CHHHHHHHHHHHHHTTTT---CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----CSC
T ss_pred CHHHHHHHHHHHHHHHcC---CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhh-----hhh
Confidence 344444444444444554 788999999999999999999888766899999999999999999877655 567
Q ss_pred eeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 214 i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+++..+|..+++ ++||.|++..+++|+....+..+++++.++|||||.+++...+
T Consensus 114 v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 114 KRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp EEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 899999987764 7899999999999998778889999999999999999987654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=4e-19 Score=154.84 Aligned_cols=128 Identities=15% Similarity=0.147 Sum_probs=103.0
Q ss_pred cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc
Q 023562 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (280)
Q Consensus 134 ~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~ 213 (280)
.+........+.+.+.+. ..++.+|||||||+|.++..++++...+|+|+++|+.+++.+++++...++ ...
T Consensus 41 tL~~Aq~~k~~~~~~~l~---l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l-----~~~ 112 (291)
T d1kpia_ 41 TLEEAQYAKRKLALDKLN---LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----PRR 112 (291)
T ss_dssp CHHHHHHHHHHHHHHTTC---CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCC-----SSC
T ss_pred CHHHHHHHHHHHHHHhcC---CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhcc-----chh
Confidence 344444333444444444 788999999999999999999988767899999999999999999887665 456
Q ss_pred eeEEEccCCCCCCCCCcEEEEEccchhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 214 i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+.+...|... .+++||.|+|..+++|+++ +.++.+++++.++|||||.+++...+.
T Consensus 113 v~~~~~d~~~---~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~ 175 (291)
T d1kpia_ 113 KEVRIQGWEE---FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 175 (291)
T ss_dssp EEEEECCGGG---CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred hhhhhhcccc---cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence 7777777543 3479999999999999985 357899999999999999999977653
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.78 E-value=3.2e-19 Score=149.83 Aligned_cols=99 Identities=23% Similarity=0.295 Sum_probs=87.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++.. .++++..+++++++++ ++||+|++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~----------~~~~~~~~~~~~~~~~-~~fD~I~~ 87 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK----------DGITYIHSRFEDAQLP-RRYDNIVL 87 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC----------SCEEEEESCGGGCCCS-SCEEEEEE
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc----------cccccccccccccccc-cccccccc
Confidence 467899999999999999887766 59999999999999998864 3588999999888765 79999999
Q ss_pred cchhhcCChhhHHHHHHHHH-HcCCCCcEEEEEe
Q 023562 237 QWCIGHLTDDDFVSFFKRAK-VGLKPGGFFVLKE 269 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~-r~LkpGG~lii~e 269 (280)
..+++|++ +...+++++. ++|+|||.+++.-
T Consensus 88 ~~vleh~~--d~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 88 THVLEHID--DPVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp ESCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cceeEecC--CHHHHHHHHHHHhcCCCceEEEEe
Confidence 99999998 6669999998 7899999999974
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=6.1e-19 Score=148.55 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=95.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCC-----------CCCCCcceeEEEccCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-----------APDMHKATNFFCVPLQD 223 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~-----------~~~~~~~i~~~~~d~~~ 223 (280)
..++.+|||+|||+|..+..|+++|+ +|+|||+|+.+|+.|+++....+.. ......++++.++|+.+
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 45778999999999999999999988 4999999999999999886542110 01113578999999988
Q ss_pred CC-CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 224 FT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 224 ~~-~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++ ...+.||+|+...+++|+++++...+++++.++|||||.+++...
T Consensus 122 l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 75 445799999999999999999999999999999999998877643
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=1.4e-18 Score=143.70 Aligned_cols=94 Identities=19% Similarity=0.196 Sum_probs=83.5
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
..+|||+|||+|.++..+. .++|+|+|+.|++.|+++ ++.++++|+++++..+++||+|+++
T Consensus 37 ~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-------------~~~~~~~d~~~l~~~~~~fD~I~~~ 98 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDFALMV 98 (208)
T ss_dssp SSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-------------ccccccccccccccccccccccccc
Confidence 4589999999999887662 478999999999999874 3789999999998888999999999
Q ss_pred chhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.+++|++ ++..+++++.++|+|||.+++.+..
T Consensus 99 ~~l~h~~--d~~~~l~~~~~~L~pgG~l~i~~~~ 130 (208)
T d1vlma_ 99 TTICFVD--DPERALKEAYRILKKGGYLIVGIVD 130 (208)
T ss_dssp SCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccc--ccccchhhhhhcCCCCceEEEEecC
Confidence 9999998 6779999999999999999998653
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.74 E-value=6.7e-18 Score=144.25 Aligned_cols=110 Identities=22% Similarity=0.271 Sum_probs=95.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..+..+|||||||+|.++..++++++. .++++|+ +.+++.+++++...++ ..+++++.+|+.+.. +.+||+
T Consensus 78 ~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~rv~~~~~D~~~~~--~~~~D~ 149 (253)
T d1tw3a2 78 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL-----SDRVDVVEGDFFEPL--PRKADA 149 (253)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC-----TTTEEEEECCTTSCC--SSCEEE
T ss_pred CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc-----ccchhhccccchhhc--ccchhh
Confidence 345679999999999999999998766 7899997 6799999999887654 567999999986533 357999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
|++.+++||+++++...+|++++++|||||.++|.|.+.
T Consensus 150 v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~ 188 (253)
T d1tw3a2 150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD 188 (253)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred eeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence 999999999998888899999999999999999998764
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.2e-18 Score=141.98 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=85.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fDl 233 (280)
.++.+|||||||+|..+..+++..+.+|+++|+|+.|++.|+++.... ..++.++..+.... ..++++||.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~fD~ 124 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDG 124 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhc-------ccccccccccccccccccccccccc
Confidence 356799999999999999998776668999999999999999998764 34567777665443 345578999
Q ss_pred EE-----ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IW-----VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~-----~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+ +...++|+. +...+++++.|+|||||+|++.+
T Consensus 125 i~fD~~~~~~~~~~~~--~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 125 ILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp EEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECC
T ss_pred eeeccccccccccccc--CHHHHHHHHHHHcCCCcEEEEEe
Confidence 87 456777766 67799999999999999998854
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.5e-17 Score=143.22 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=83.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..+++.+.. .++|+|+|+.|++.|+++. .++.|.++|+.++++++++||+|
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----------~~~~~~~~d~~~l~~~~~sfD~v 151 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVASSHRLPFSDTSMDAI 151 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTSCSBCTTCEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----------ccccceeeehhhccCCCCCEEEE
Confidence 46679999999999999999988765 7999999999999999874 35889999999999888999999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++.++++| ++++.|+|||||+++++.+
T Consensus 152 ~~~~~~~~---------~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 152 IRIYAPCK---------AEELARVVKPGGWVITATP 178 (268)
T ss_dssp EEESCCCC---------HHHHHHHEEEEEEEEEEEE
T ss_pred eecCCHHH---------HHHHHHHhCCCcEEEEEee
Confidence 99888766 4568999999999999864
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.69 E-value=1.9e-17 Score=135.02 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=89.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
+.++.+|||+|||+|.++..++..+ .+|+++|+|+.|++.|+++++..++ ..+++++++|+.+...+..+||+|
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl-----~~~v~~~~gda~~~~~~~~~~D~v 104 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLMEGDAPEALCKIPDIDIA 104 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEEESCHHHHHTTSCCEEEE
T ss_pred CCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCC-----CcceEEEECchhhcccccCCcCEE
Confidence 6688899999999999999988664 4799999999999999999988765 468999999988776566799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++....++ ...+++.+.+.|||||++++..
T Consensus 105 ~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 105 VVGGSGGE-----LQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp EESCCTTC-----HHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCcccc-----chHHHHHHHHHhCcCCEEEEEe
Confidence 99876554 4578999999999999998864
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.69 E-value=4.8e-17 Score=133.41 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=88.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|++++..+++. ..++++..+|+.+ ..++++||+|
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~----~~~i~~~~~d~~~-~~~~~~fD~I 123 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLD----NYDIRVVHSDLYE-NVKDRKYNKI 123 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCT----TSCEEEEECSTTT-TCTTSCEEEE
T ss_pred cCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCc----cceEEEEEcchhh-hhccCCceEE
Confidence 4567899999999999999887655 47999999999999999988765442 2468899999876 3445899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+++.++++.. +....+++.+.++|+|||.+++.
T Consensus 124 i~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 124 ITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp EECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcccEEecc-hhhhhHHHHHHHhcCcCcEEEEE
Confidence 9998876543 44578999999999999998875
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.68 E-value=9.2e-17 Score=137.40 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=94.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
....+|||||||+|.++..++++++. +++++|+ +.+++.+++++...++ ..++.+...|+.+. . +.+||+|
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~-----~~ri~~~~~d~~~~-~-p~~~D~v 151 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL-----ADRVTVAEGDFFKP-L-PVTADVV 151 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTSC-C-SCCEEEE
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCC-----cceeeeeeeecccc-c-cccchhh
Confidence 45568999999999999999999876 8999997 7899999998877654 46789999988653 2 3579999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++.+++||+++++...+|++++++|||||.++|.|.+.
T Consensus 152 ~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~ 189 (256)
T d1qzza2 152 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRAD 189 (256)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred hccccccccCcHHHHHHHHHHHhhcCCcceeEEEEecc
Confidence 99999999998888999999999999999999999874
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=4.3e-17 Score=141.91 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=87.0
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
.++...+.. .++.+|||+|||+|..+..|++++. +|+|+|+|+.||+.|+++....+.. .......+...
T Consensus 46 ~~l~~~l~~-------~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~--~~~~~~~~~~~ 115 (292)
T d1xvaa_ 46 AWLLGLLRQ-------HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKE--PAFDKWVIEEA 115 (292)
T ss_dssp HHHHHHHHH-------TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCEEEEC
T ss_pred HHHHHHhhh-------cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccc--cccceeeeeec
Confidence 555555543 3456999999999999999998876 5999999999999999886553220 00112334444
Q ss_pred cCCCCC---CCCCcEEEEEcc-chhhcCCh-----hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 220 PLQDFT---PETGRYDVIWVQ-WCIGHLTD-----DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 220 d~~~~~---~~~~~fDlV~~~-~~l~~~~~-----~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++..+. +..++||+|+|. .+++|+++ +++..+++++.++|||||+|++.
T Consensus 116 ~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 116 NWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp CGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 443211 223689999976 58999865 36788999999999999999985
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.7e-17 Score=141.15 Aligned_cols=133 Identities=16% Similarity=0.066 Sum_probs=92.2
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCC--------
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-------- 211 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~-------- 211 (280)
.++.+.+.+.+.. ...++.+|||+|||+|.++..++..++.+|+|+|+|+.||+.|++++...+.......
T Consensus 35 ~~~~~~~~~~~~~-~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 113 (257)
T d2a14a1 35 KFNLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL 113 (257)
T ss_dssp HHHHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHh
Confidence 4444444443331 1345779999999999998877767666899999999999999998765432110000
Q ss_pred ---------------cce-eEEEccC----CCCCCCCCcEEEEEccchhhcCCh--hhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 212 ---------------KAT-NFFCVPL----QDFTPETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 212 ---------------~~i-~~~~~d~----~~~~~~~~~fDlV~~~~~l~~~~~--~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
..+ .....+. ...+.+.++||+|++.++++|++. +++..+++++.++|||||++++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~ 193 (257)
T d2a14a1 114 EGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193 (257)
T ss_dssp TTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEE
Confidence 000 1111111 112345679999999999999864 577899999999999999999987
Q ss_pred ccCC
Q 023562 270 NIAR 273 (280)
Q Consensus 270 ~~~~ 273 (280)
....
T Consensus 194 ~~~~ 197 (257)
T d2a14a1 194 TLRL 197 (257)
T ss_dssp ESSC
T ss_pred eccc
Confidence 7654
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=5.3e-16 Score=133.89 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=82.9
Q ss_pred CCCccEEEeecCccHHHHHHHHh----cCC---cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----
Q 023562 156 NQHLVALDCGSGIGRITKNLLIR----YFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---- 224 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~----~~~---~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~---- 224 (280)
++..+|||+|||+|.++..++.. +.. .++++|+|+.|++.|++++..... ......++.+.+++++
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 115 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN---LENVKFAWHKETSSEYQSRM 115 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS---CTTEEEEEECSCHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc---cccccccchhhhhhhhcchh
Confidence 34458999999999998887654 222 589999999999999998765311 0012334445444321
Q ss_pred --CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 225 --TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 225 --~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+.++++||+|++..+++|++ ++..+++++.++|+|||++++..+
T Consensus 116 ~~~~~~~~fD~I~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 116 LEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp TTSSSCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCCceeEEEEccceecCC--CHHHHHHHHHhhCCCCCEEEEEEe
Confidence 33458999999999999998 677999999999999999988754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.65 E-value=4.8e-16 Score=130.69 Aligned_cols=121 Identities=12% Similarity=-0.021 Sum_probs=95.1
Q ss_pred HHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc
Q 023562 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (280)
Q Consensus 142 l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d 220 (280)
|...+...+.....+++.+|||+|||+|..+..+++.+.. .|+++|+|+.|++.++++... ..++.++..|
T Consensus 59 laA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~--------~~ni~~i~~d 130 (230)
T d1g8sa_ 59 LAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--------RENIIPILGD 130 (230)
T ss_dssp HHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--------CTTEEEEECC
T ss_pred HHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh--------hcccceEEEe
Confidence 4444444444455788999999999999999999987654 799999999999999998776 3567778887
Q ss_pred CCCCC-CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 221 LQDFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 221 ~~~~~-~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
..... ..+..+|++++...+++.. +...+++++.+.|||||.+++++...
T Consensus 131 ~~~~~~~~~~~~~v~~i~~~~~~~~--~~~~~l~~~~r~LKpgG~~~i~~k~~ 181 (230)
T d1g8sa_ 131 ANKPQEYANIVEKVDVIYEDVAQPN--QAEILIKNAKWFLKKGGYGMIAIKAR 181 (230)
T ss_dssp TTCGGGGTTTCCCEEEEEECCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred eccCcccccccceeEEeeccccchH--HHHHHHHHHHHhcccCceEEEEeecc
Confidence 76653 3345677777766677766 77799999999999999999986543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=8.4e-17 Score=137.26 Aligned_cols=103 Identities=17% Similarity=0.111 Sum_probs=84.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++++.++ .++++.++|+.+.. +.++||+|
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~-------~~~~~~~~d~~~~~-~~~~fD~V 188 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNG-------VRPRFLEGSLEAAL-PFGPFDLL 188 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTT-------CCCEEEESCHHHHG-GGCCEEEE
T ss_pred cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcC-------CceeEEeccccccc-cccccchh
Confidence 34678999999999999998887765 69999999999999999988764 35678888876542 34799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+++...+ .+..++..+.++|||||++++++.+
T Consensus 189 ~ani~~~-----~l~~l~~~~~~~LkpGG~lilSgil 220 (254)
T d2nxca1 189 VANLYAE-----LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp EEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhccccc-----cHHHHHHHHHHhcCCCcEEEEEecc
Confidence 9976544 4567899999999999999997643
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.2e-16 Score=137.23 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=86.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCC--C----------------------
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPD--M---------------------- 210 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~--~---------------------- 210 (280)
..++.+|||+|||+|..+...+.+++.+|+++|+|+.|++.+++++........- .
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 3467899999999998876666677778999999999999999987653210000 0
Q ss_pred CcceeEEEccCCCC------CCCCCcEEEEEccchhhcCCh--hhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 211 HKATNFFCVPLQDF------TPETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 211 ~~~i~~~~~d~~~~------~~~~~~fDlV~~~~~l~~~~~--~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
.........|+..- ...+++||+|++.++++|+.+ +++..++++++++|||||++++...+..
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~ 202 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE 202 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence 00112333455331 233468999999999999864 4688999999999999999999866543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=1.3e-15 Score=126.71 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=84.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
.+++.+|||+|||+|..+..+++.... .|+++|+++.+++.|+++++..+. .++.+.++|..+..+..++||
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~------~n~~~~~~d~~~~~~~~~~fD 146 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVCGDGYYGVPEFSPYD 146 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEE
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc------cccccccCchHHccccccchh
Confidence 678899999999999999988876433 799999999999999999876543 578888999877666667999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++..+++++++ .+.+.|||||.+++.
T Consensus 147 ~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 147 VIFVTVGVDEVPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp EEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred hhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence 9999999998872 356779999999884
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.58 E-value=1.8e-15 Score=125.34 Aligned_cols=104 Identities=13% Similarity=0.010 Sum_probs=83.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC---Cc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~ 230 (280)
..++.+|||+|||+|..+..+++.... .|+|+|+|+.|++.|+++... ..++.++..|..+..... ..
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~--------~~ni~~i~~d~~~~~~~~~~~~~ 125 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASKPWKYSGIVEK 125 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTCGGGTTTTCCC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc--------cCCceEEEeeccCccccccccce
Confidence 778899999999999999999877543 799999999999999998766 357899999987754322 34
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|+|+. .+.|.. +...+++++.+.|||||++++.+.
T Consensus 126 vd~v~~--~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 126 VDLIYQ--DIAQKN--QIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp EEEEEE--CCCSTT--HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEe--cccChh--hHHHHHHHHHHHhccCCeEEEEEE
Confidence 565544 244544 667899999999999999998753
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.57 E-value=3.5e-15 Score=123.08 Aligned_cols=105 Identities=12% Similarity=0.235 Sum_probs=88.1
Q ss_pred ccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEEEE
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDlV~ 235 (280)
..|||||||+|..+..+++..++ .++|+|+++.++..|.++....++ .|+.++++|+..+. ++++++|.|+
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l------~Nv~~~~~Da~~l~~~~~~~~~d~v~ 104 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEPGEVKRVY 104 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc------cCchhcccchhhhhcccCchhhhccc
Confidence 37999999999999999998776 899999999999999998877654 58999999987764 5678999999
Q ss_pred ccchhhcCChhh------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~~~d------~~~~l~~~~r~LkpGG~lii~e 269 (280)
+.+...+..... ...+++.+.++|||||.|+|..
T Consensus 105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 887766544321 1479999999999999998863
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=4.5e-15 Score=131.12 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=88.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+...|+++|.|+ +++.|+++....++ ..++.++.+++.+++.++++||+|++
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~-----~~~i~~i~~~~~~l~~~~~~~D~i~s 111 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGF-----SDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCc-----cccceEEEeehhhccCcccceeEEEE
Confidence 5679999999999999988888888999999986 77888888777654 56799999999999877789999999
Q ss_pred cchhhcCCh-hhHHHHHHHHHHcCCCCcEEE
Q 023562 237 QWCIGHLTD-DDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 237 ~~~l~~~~~-~d~~~~l~~~~r~LkpGG~li 266 (280)
....+++.. ..+..++..+.++|||||+++
T Consensus 112 e~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 876655543 356789999999999999986
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=7.7e-15 Score=125.33 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=88.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-CC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..|++.. .. +|+++|+++++++.|++++.... .....++.+.++|+.+.++++++||
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~---~~~~~nv~~~~~d~~~~~~~~~~fD 170 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY---GQPPDNWRLVVSDLADSELPDGSVD 170 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH---TSCCTTEEEECSCGGGCCCCTTCEE
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc---cCCCceEEEEecccccccccCCCcc
Confidence 6788999999999999999999873 33 89999999999999999876421 0113679999999988877778999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.|++ +++ +...++..+.++|||||.+++...+
T Consensus 171 aV~l-----dlp--~P~~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 171 RAVL-----DML--APWEVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp EEEE-----ESS--CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred eEEE-----ecC--CHHHHHHHHHhccCCCCEEEEEeCc
Confidence 9975 566 4448999999999999999986544
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=7.8e-15 Score=128.93 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=86.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+..+|+++|.|+.+ ..+++++..+++ ..++.++++++.+++.+.++||+|++
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~-----~~~v~~~~~~~~~~~~~~~~~D~ivs 106 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKL-----DHVVTIIKGKVEEVELPVEKVDIIIS 106 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTC-----TTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCC-----ccccceEeccHHHcccccceeEEEee
Confidence 457899999999999998888887789999999865 556666555544 56799999999999877789999999
Q ss_pred cchhhcCCh-hhHHHHHHHHHHcCCCCcEEEE
Q 023562 237 QWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 237 ~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii 267 (280)
....+++.. ..+..++..+.++|||||.++-
T Consensus 107 ~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 107 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 877666544 3578999999999999999873
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.53 E-value=1.1e-14 Score=123.60 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=85.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-CC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++.. .. +|+++|+++.+++.|+++++..+. ..++++...|+.+... +++||
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~-----~~nv~~~~~Di~~~~~-~~~fD 156 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGNVRTSRSDIADFIS-DQMYD 156 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTTEEEECSCTTTCCC-SCCEE
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC-----CCceEEEEeeeecccc-cceee
Confidence 6788999999999999999998763 32 799999999999999999876432 4689999999988744 47899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.|++. ++ +...++..+.++|||||++++...
T Consensus 157 ~V~ld-----~p--~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 157 AVIAD-----IP--DPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp EEEEC-----CS--CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred eeeec-----CC--chHHHHHHHHHhcCCCceEEEEeC
Confidence 99863 44 334799999999999999998644
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.1e-14 Score=128.55 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=91.6
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCC---CCCCCccee
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHM---APDMHKATN 215 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~---~~~~~~~i~ 215 (280)
..+..++.. +. .+++.+|||+|||+|.++..++..... .++|+|+|+.|++.|+++....... ......+++
T Consensus 138 ~~~~~~~~~-~~---l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~ 213 (328)
T d1nw3a_ 138 DLVAQMIDE-IK---MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT 213 (328)
T ss_dssp HHHHHHHHH-SC---CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHHHHHH-cC---CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence 445555543 22 567889999999999999988876544 7999999999999998765431000 000134699
Q ss_pred EEEccCCCCCCCCC--cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 216 FFCVPLQDFTPETG--RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 216 ~~~~d~~~~~~~~~--~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
|+++|+.+.+..+. .+|+|+++. +.|.+ ++...++++.+.|||||.|++.+....
T Consensus 214 ~~~gd~~~~~~~~~~~~advi~~~~-~~f~~--~~~~~l~e~~r~LKpGg~iv~~~~~~~ 270 (328)
T d1nw3a_ 214 LERGDFLSEEWRERIANTSVIFVNN-FAFGP--EVDHQLKERFANMKEGGRIVSSKPFAP 270 (328)
T ss_dssp EEECCTTSHHHHHHHHHCSEEEECC-TTTCH--HHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred EEECcccccccccccCcceEEEEcc-eecch--HHHHHHHHHHHhCCCCcEEEEecccCC
Confidence 99999988654332 347777654 44543 778999999999999999999876644
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.7e-14 Score=125.07 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=85.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+++.+..+|+++|.|+.|+. +++.....+. ..+++++.+++.+++.++.+||+|+
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~-----~~~i~~~~~~~~~l~~~~~~~D~Iv 107 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKL-----EDTITLIKGKIEEVHLPVEKVDVII 107 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTC-----TTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCC-----CccceEEEeeHHHhcCccccceEEE
Confidence 356789999999999999999888889999999999875 4444444333 5679999999999987778999999
Q ss_pred ccchhhcCChh-hHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~l~~~~~~-d~~~~l~~~~r~LkpGG~lii 267 (280)
+....+++..+ .+..++....+.|||||.++-
T Consensus 108 se~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 108 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 98776665443 456788888999999999873
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.5e-14 Score=120.99 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=83.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-C-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
.+++.+|||+|||+|+.+..+++... . +|+++|+++++++.|++++...++.+.. ..++.+..+|.....++.++||
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~-~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS-SGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHH-TSSEEEEESCGGGCCGGGCCEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccccc-ccceEEEEeecccccchhhhhh
Confidence 56788999999999999987776532 2 7999999999999999988754321111 1467889999877666668999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++..+++++++ .+.+.|||||++++.
T Consensus 153 ~I~~~~~~~~ip~--------~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 153 AIHVGAAAPVVPQ--------ALIDQLKPGGRLILP 180 (224)
T ss_dssp EEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred hhhhhcchhhcCH--------HHHhhcCCCcEEEEE
Confidence 9999999988772 367889999999984
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.49 E-value=7.2e-14 Score=115.05 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=84.9
Q ss_pred ccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEEEE
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDlV~ 235 (280)
..|||||||+|.++..+++..++ .++|+|+++.++..|.+++...++ .|+.+..+|+.++. +++.++|.|+
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l------~Ni~~~~~da~~l~~~~~~~~~~~i~ 106 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDLTDYFEDGEIDRLY 106 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc------ccceeeecCHHHHhhhccCCceehhc
Confidence 37999999999999999998776 899999999999999988876544 58999999988764 5568999998
Q ss_pred ccchhhcCChhh------HHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~~d------~~~~l~~~~r~LkpGG~lii~ 268 (280)
+.+.-.+..... -..+++.+.++|||||.|+|.
T Consensus 107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred ccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 776543222111 158999999999999999885
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.49 E-value=1e-13 Score=115.93 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=89.0
Q ss_pred HHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhc-CC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 142 l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~-~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
|...+...+.....+++.+|||+|||+|..+..+++.. .. .|+++|+|+.|++.++++++. ..++..+..
T Consensus 58 laa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~--------~~~~~~i~~ 129 (227)
T d1g8aa_ 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILG 129 (227)
T ss_dssp HHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEEC
T ss_pred HHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh--------cCCceEEEE
Confidence 33344444554558889999999999999999999874 33 799999999999999999876 345777777
Q ss_pred cCCCC---CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 220 PLQDF---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 220 d~~~~---~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|.... ......+|+|++. +.|.. +...+++++.+.|||||+++++.
T Consensus 130 d~~~~~~~~~~~~~vD~i~~d--~~~~~--~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 130 DATKPEEYRALVPKVDVIFED--VAQPT--QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CTTCGGGGTTTCCCEEEEEEC--CCSTT--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCcccccccccceEEEEEE--ccccc--hHHHHHHHHHHhcccCCeEEEEE
Confidence 76543 3344689998764 33433 66789999999999999999874
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.48 E-value=7.5e-14 Score=116.46 Aligned_cols=97 Identities=21% Similarity=0.136 Sum_probs=80.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|+.+..+++.. .+|+++|+++.+++.|++++.. ..++.+..+|.....++.++||.|
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~--------~~nv~~~~~d~~~g~~~~~pfD~I 138 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSY--------YNNIKLILGDGTLGYEEEKPYDRV 138 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTT--------CSSEEEEESCGGGCCGGGCCEEEE
T ss_pred hcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhc--------ccccccccCchhhcchhhhhHHHH
Confidence 6788899999999999999777654 5799999999999999998775 367999999976644445789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++..++.++++ .+.+.|+|||++++.
T Consensus 139 iv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 139 VVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred HhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 99988888772 245789999999884
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=9.6e-14 Score=118.84 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=84.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-C-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++... . +|+++|+|+.+++.|+++++..++ ..++.+...|+... +....||
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~-----~~~v~~~~~d~~~~-~~~~~~D 174 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIKVRDISEG-FDEKDVD 174 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEECCCGGGC-CSCCSEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc-----ccCcEEEecccccc-cccccee
Confidence 67889999999999999999987643 2 799999999999999999987654 46778888886443 2346899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.|+. +++ +...+++++.++|||||.+++..++
T Consensus 175 ~V~~-----d~p--~p~~~l~~~~~~LKpGG~lv~~~P~ 206 (266)
T d1o54a_ 175 ALFL-----DVP--DPWNYIDKCWEALKGGGRFATVCPT 206 (266)
T ss_dssp EEEE-----CCS--CGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred eeEe-----cCC--CHHHHHHHHHhhcCCCCEEEEEeCc
Confidence 8864 566 4558999999999999999986443
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=5.7e-13 Score=114.19 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=83.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..+.+|||+|||+|.++..++...+. .|+++|+|+.+++.|++|+...++ .+++|+++|+.+.. ..++||+|
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~------~~v~~~~~d~~~~~-~~~~fDlI 179 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSDWFSAL-AGQQFAMI 179 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCSTTGGG-TTCCEEEE
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc------ccceeeeccccccc-CCCceeEE
Confidence 45678999999999999999887765 899999999999999999887643 36999999986643 33699999
Q ss_pred Eccch-------------hhcCCh----------hhHHHHHHHHHHcCCCCcEEEE
Q 023562 235 WVQWC-------------IGHLTD----------DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 235 ~~~~~-------------l~~~~~----------~d~~~~l~~~~r~LkpGG~lii 267 (280)
+|+-. +.|-+. ..+..+++.+.+.|+|||.+++
T Consensus 180 vsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l 235 (274)
T d2b3ta1 180 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL 235 (274)
T ss_dssp EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence 99832 111111 1356799999999999999988
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.37 E-value=8e-13 Score=109.44 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=83.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|+.+..++.....+|+++|.++.+++.|++++...+. .|+.+.++|...-.+..++||.|
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~------~nv~~~~gd~~~g~~~~~pfD~I 149 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------KNVHVILGDGSKGFPPKAPYDVI 149 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEE
T ss_pred cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC------ceeEEEECccccCCcccCcceeE
Confidence 678889999999999999977655334699999999999999999987654 68999999987765556899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++..++.++++ . +.+.|+|||++++.
T Consensus 150 iv~~a~~~ip~----~----l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 150 IVTAGAPKIPE----P----LIEQLKIGGKLIIP 175 (215)
T ss_dssp EECSBBSSCCH----H----HHHTEEEEEEEEEE
T ss_pred EeecccccCCH----H----HHHhcCCCCEEEEE
Confidence 99999888772 2 45679999999885
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.37 E-value=3.7e-13 Score=114.80 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=87.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..++.++..+|+++|+|+.+++.+++++..+++ ..+++++++|+.++... +.||.|+
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l-----~~~v~~~~~D~~~~~~~-~~~D~Ii 179 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFPGE-NIADRIL 179 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCCCC-SCEEEEE
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCC-----CceEEEEEcchHHhccC-CCCCEEE
Confidence 46789999999999999999988766899999999999999999988766 56799999999988755 7899998
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+...- .-..++..+.+.|+|||++.+.+++.
T Consensus 180 ~~~p~------~~~~~l~~a~~~l~~gG~lh~~~~~~ 210 (260)
T d2frna1 180 MGYVV------RTHEFIPKALSIAKDGAIIHYHNTVP 210 (260)
T ss_dssp ECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ECCCC------chHHHHHHHHhhcCCCCEEEEEeccc
Confidence 76331 12357888889999999998776653
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=3.7e-13 Score=121.21 Aligned_cols=126 Identities=14% Similarity=0.054 Sum_probs=84.8
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCC----CCCCCCcce
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENH----MAPDMHKAT 214 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~----~~~~~~~~i 214 (280)
.++..++.. +. .+++.+|||||||+|.++..++.... .+++|+|+|+.|++.|+++....+. .... ....
T Consensus 203 ~~i~~Il~~-l~---Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~-~~~~ 277 (406)
T d1u2za_ 203 NFLSDVYQQ-CQ---LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNNV 277 (406)
T ss_dssp HHHHHHHHH-TT---CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCCE
T ss_pred HHHHHHHHH-hC---CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccc-cccc
Confidence 455565554 22 67888999999999999999987754 4799999999999999988754210 0000 0112
Q ss_pred eE-EEccCCCCCC---CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 215 NF-FCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 215 ~~-~~~d~~~~~~---~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
.+ ..+++.+.+. .-..+|+|+++. ++|. +++...++++.+.|||||.|++.+....
T Consensus 278 ~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~--~~l~~~L~ei~r~LKPGGrIVs~~~~~~ 337 (406)
T d1u2za_ 278 EFSLKKSFVDNNRVAELIPQCDVILVNN-FLFD--EDLNKKVEKILQTAKVGCKIISLKSLRS 337 (406)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECC-TTCC--HHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred eeeeeechhhccccccccccceEEEEec-ccCc--hHHHHHHHHHHHhcCCCcEEEEecccCC
Confidence 22 2233322210 013578888764 3343 4888999999999999999999876543
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.5e-12 Score=114.26 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=81.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-C-cEEEEeCCHHHHHHHHHHcCcCCCC-----CCCCCcceeEEEccCCCCC--
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHM-----APDMHKATNFFCVPLQDFT-- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~-~v~~vD~S~~~l~~A~~~~~~~~~~-----~~~~~~~i~~~~~d~~~~~-- 225 (280)
..++.+|||+|||+|.++..|++... . +|+++|+++.+++.|+++++..+.. ......++++...|+.+..
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 67889999999999999999987633 3 7999999999999999987642100 1112467999999998764
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
....+||.|++ .++ +...++.++.++|||||++++.-+
T Consensus 176 ~~~~~fD~V~L-----D~p--~P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 176 IKSLTFDAVAL-----DML--NPHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp -----EEEEEE-----CSS--STTTTHHHHGGGEEEEEEEEEEES
T ss_pred cCCCCcceEee-----cCc--CHHHHHHHHHHhccCCCEEEEEeC
Confidence 34568999975 344 333689999999999999998544
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.34 E-value=4.8e-12 Score=103.08 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=81.8
Q ss_pred CCCccEEEeecCccHH----HHHHHHhcC----C-cEEEEeCCHHHHHHHHHHcCcC------------------CCC--
Q 023562 156 NQHLVALDCGSGIGRI----TKNLLIRYF----N-EVDLLEPVSHFLDAARESLAPE------------------NHM-- 206 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~----s~~l~~~~~----~-~v~~vD~S~~~l~~A~~~~~~~------------------~~~-- 206 (280)
.++.||+++|||+|.- ++.+.+... . +|+++|+|+.+|+.|++..-.. +..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 4567999999999974 333333211 1 6999999999999998532110 000
Q ss_pred -----CCCCCcceeEEEccCCCCC-CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--eccC
Q 023562 207 -----APDMHKATNFFCVPLQDFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (280)
Q Consensus 207 -----~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (280)
.......+.+...++.+.. ...++||+|+|.++|+|++++....+++++++.|+|||++++- |.+.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~sE~l~ 176 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENFS 176 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCCCT
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecCcccc
Confidence 0000122445555554432 3347899999999999999988899999999999999999885 6654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.33 E-value=7.6e-13 Score=116.38 Aligned_cols=111 Identities=13% Similarity=0.057 Sum_probs=88.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~f 231 (280)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++ ..++++.++|+.++. ....+|
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl-----~~~~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCC-----CccceeeechhhhhhHHHHhccCCC
Confidence 35789999999999999999988877899999999999999999988766 567899999976531 234689
Q ss_pred EEEEccchhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 232 DVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 232 DlV~~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+|++.-....-.. .++..++..+.++|+|||+|+++.+.
T Consensus 219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 99998532111111 14567889999999999999987654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.31 E-value=1e-12 Score=103.07 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=82.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDlV~ 235 (280)
.+.+|||+|||+|.++...+.++..+|+++|.++.+++.+++++...+. ..+++++++|+..+ ....++||+|+
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~-----~~~~~ii~~D~~~~l~~~~~~fDiIf 88 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEAERAIDCLTGRFDLVF 88 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhccc-----ccchhhhcccccccccccccccceeE
Confidence 4679999999999999999999988999999999999999999987654 56799999998764 23347899999
Q ss_pred ccchhhcCChhhHHHHHHHHH--HcCCCCcEEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~--r~LkpGG~lii~ 268 (280)
+.-... .......+..+. +.|+|||++++.
T Consensus 89 ~DPPy~---~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 89 LDPPYA---KETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp ECCSSH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred echhhc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 864321 123455666654 579999999874
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.26 E-value=2e-12 Score=113.36 Aligned_cols=107 Identities=21% Similarity=0.156 Sum_probs=83.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CCCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD 232 (280)
++.+|||++||+|.++..++. +..+|+++|+|+.+++.|++++..+++ .+++++++|+.++ ....++||
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl------~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCC------CCcceeeccHHHHhhhhHhhhcCCC
Confidence 578999999999999998874 555799999999999999999988765 4688999987664 23346899
Q ss_pred EEEccch-hhcCC------hhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWC-IGHLT------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~-l~~~~------~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++.-. +..-. ..++..++..+.++|+|||+|+++.+
T Consensus 218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9997622 11101 02456789999999999999988755
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.24 E-value=1.6e-12 Score=108.24 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=79.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc----C---CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY----F---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~----~---~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 227 (280)
..++.+|||+|||+|+.+..+++.. . .+|+++|+++.+++.|++++...++.... ..++.+..+|..+..++
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~-~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLD-SGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHH-HTSEEEEESCGGGCCGG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcC-ccEEEEEeccccccccc
Confidence 5578899999999999988666431 1 26999999999999999876432110000 14689999998776555
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.++||.|++..++.+++ + .+.+.|||||++++.
T Consensus 157 ~~~fD~Iiv~~a~~~~p--~------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 157 NAPYNAIHVGAAAPDTP--T------ELINQLASGGRLIVP 189 (223)
T ss_dssp GCSEEEEEECSCBSSCC--H------HHHHTEEEEEEEEEE
T ss_pred ccceeeEEEEeechhch--H------HHHHhcCCCcEEEEE
Confidence 67999999999988877 2 256899999999885
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.24 E-value=1.5e-11 Score=103.70 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=84.2
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
....+|||||||+|.++..++++++. +++.+|. |..++. ... ..++++..+|+.+.. ...|+|
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~----~~~--------~~ri~~~~gd~~~~~---p~~D~~ 143 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN----APP--------LSGIEHVGGDMFASV---PQGDAM 143 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT----CCC--------CTTEEEEECCTTTCC---CCEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc----cCC--------CCCeEEecCCccccc---ccceEE
Confidence 34578999999999999999999887 8999996 444431 111 367999999986532 246999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
++.+++|+.++++...+|+++++.|+|||.++|.|.+..
T Consensus 144 ~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~ 182 (244)
T d1fp1d2 144 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182 (244)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred EEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEec
Confidence 999999999999999999999999999999999998753
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.24 E-value=8e-12 Score=101.81 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=60.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.+.+|||+|||+|.++..++..+..+|+++|+++.+++.|+++.. ++++.++|+.+++ ++||+|++
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~-----------~~~~~~~D~~~l~---~~fD~Vi~ 113 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSEIS---GKYDTWIM 113 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGGCC---CCEEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc-----------cccEEEEehhhcC---CcceEEEe
Confidence 467999999999999998888888789999999999999999864 3789999998764 78999999
Q ss_pred cch
Q 023562 237 QWC 239 (280)
Q Consensus 237 ~~~ 239 (280)
+-.
T Consensus 114 NPP 116 (197)
T d1ne2a_ 114 NPP 116 (197)
T ss_dssp CCC
T ss_pred Ccc
Confidence 843
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.17 E-value=3.4e-11 Score=98.52 Aligned_cols=73 Identities=22% Similarity=0.230 Sum_probs=63.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..++.++...|+++|+|+.+++.+++++... ..+.++..+|+..+. ++||+|++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~-------~~~~~~~~~d~~~~~---~~fD~Vi~ 115 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF-------KGKFKVFIGDVSEFN---SRVDIVIM 115 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG-------TTSEEEEESCGGGCC---CCCSEEEE
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc-------CCCceEEECchhhhC---CcCcEEEE
Confidence 56799999999999999888888778999999999999999998765 356788999987764 68999998
Q ss_pred cch
Q 023562 237 QWC 239 (280)
Q Consensus 237 ~~~ 239 (280)
+-.
T Consensus 116 nPP 118 (201)
T d1wy7a1 116 NPP 118 (201)
T ss_dssp CCC
T ss_pred cCc
Confidence 844
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.17 E-value=1.5e-11 Score=106.61 Aligned_cols=123 Identities=14% Similarity=0.134 Sum_probs=89.7
Q ss_pred hHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEE
Q 023562 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (280)
Q Consensus 138 ~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~ 217 (280)
...++...+.. ..++.+|||++||+|.++..++..+. +|++||.|+.+++.|++|+..+++. ..+++|+
T Consensus 119 nr~~~~~~~~~------~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~----~~~~~~i 187 (309)
T d2igta1 119 HWEWLKNAVET------ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLE----QAPIRWI 187 (309)
T ss_dssp HHHHHHHHHHH------SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCT----TSCEEEE
T ss_pred HHHHHHHHHhh------ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhccc----CCcEEEE
Confidence 34566666653 34677999999999999999887776 6999999999999999998876541 2368999
Q ss_pred EccCCCCC----CCCCcEEEEEcc---chhhc-----CChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 218 CVPLQDFT----PETGRYDVIWVQ---WCIGH-----LTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 218 ~~d~~~~~----~~~~~fDlV~~~---~~l~~-----~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++|+.++- ....+||+|++. +.... --.+++..++..+.++|+|||.+++...+
T Consensus 188 ~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 188 CEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp CSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred eCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 99986652 123689999975 21110 00134567888899999999976665443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.17 E-value=1.5e-11 Score=107.46 Aligned_cols=112 Identities=9% Similarity=0.066 Sum_probs=86.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~f 231 (280)
.++.+|||+.||+|.++..++..+...|++||+|+.+++.+++++..+++. ..+++++++|+.++- ....+|
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~----~~~~~~i~~d~~~~l~~~~~~~~~f 218 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD----MANHQLVVMDVFDYFKYARRHHLTY 218 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----CTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc----CcceEEEEccHHHHHHHHHhhcCCC
Confidence 356799999999999999888777778999999999999999999876551 246899999986541 234689
Q ss_pred EEEEccch-hh----cCC--hhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 232 DVIWVQWC-IG----HLT--DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 232 DlV~~~~~-l~----~~~--~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+|++.-- +. ... ..++..+++.+.++|+|||+|+++-+.
T Consensus 219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99997511 10 000 125678999999999999999997653
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.15 E-value=3.3e-11 Score=97.78 Aligned_cols=110 Identities=22% Similarity=0.292 Sum_probs=86.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~ 228 (280)
+.++..+||++||+|..+..+++.... .|+++|.++.|++.|++++... ..++.++.+++.++. ...
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-------~~r~~~~~~~f~~~~~~~~~~~~ 93 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYREADFLLKTLGI 93 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGGGHHHHHHHTTC
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-------cccccchhHHHhhHHHHHHHcCC
Confidence 567789999999999999999988644 8999999999999999998763 457899998876642 334
Q ss_pred CcEEEEEccchhh--cCC-----hhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 229 GRYDVIWVQWCIG--HLT-----DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 229 ~~fDlV~~~~~l~--~~~-----~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++||.|+....+. ++. .......+..+.++|+|||.+++....
T Consensus 94 ~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 94 EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 7899997553221 111 124578999999999999999987654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.14 E-value=7.5e-11 Score=99.32 Aligned_cols=100 Identities=12% Similarity=0.225 Sum_probs=83.4
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
..+|||||||+|.++..++++++. ++++.|. +..++.+ .. ..++++..+|+.+-. ..+|++++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~~--------~~rv~~~~gD~f~~~---p~aD~~~l 144 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----SG--------SNNLTYVGGDMFTSI---PNADAVLL 144 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----CC--------BTTEEEEECCTTTCC---CCCSEEEE
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----cc--------cCceEEEecCcccCC---CCCcEEEE
Confidence 358999999999999999999887 8999997 4444322 11 467999999987532 25799999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCC---cEEEEEeccCC
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPG---GFFVLKENIAR 273 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpG---G~lii~e~~~~ 273 (280)
.+++|+.++++...+|+++++.|+|| |.++|.|.+..
T Consensus 145 ~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~ 184 (244)
T d1fp2a2 145 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID 184 (244)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred EeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecC
Confidence 99999999999999999999999999 88999988764
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.14 E-value=1.3e-11 Score=98.45 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=70.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC--CCCCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~fDl 233 (280)
.++.+|||+|||+|.++...+.++. +++++|.|+.+++.+++++...++ ..++....+|... ......+||+
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~fD~ 113 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL-----GARVVALPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC-----CCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhcc-----ccceeeeehhcccccccccCCccce
Confidence 3567999999999999999888887 599999999999999999887644 2233333333211 1123468999
Q ss_pred EEccchhhcCChhhHHHHHHHH--HHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRA--KVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~--~r~LkpGG~lii~ 268 (280)
|++.--++. ++...+..+ ..+|+|||++++.
T Consensus 114 If~DPPY~~----~~~~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 114 AFMAPPYAM----DLAALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp EEECCCTTS----CTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred eEEcccccc----CHHHHHHHHHHcCCcCCCeEEEEE
Confidence 998643322 111223332 3579999988874
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.2e-10 Score=96.38 Aligned_cols=106 Identities=20% Similarity=0.218 Sum_probs=84.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------CC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~ 227 (280)
.++.+|||+|||+|..+..+++... .+|+.+|.++...+.|++++...++ ..+++++.+|..+.. ..
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~-----~~~i~~~~Gda~e~l~~~~~~~~ 132 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDLRLKPALETLDELLAAGE 132 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTTC
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc-----cceEEEEEeehhhcchhhhhhcc
Confidence 3567999999999999999986533 2899999999999999999988765 567999999864421 23
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.++||+|+...- .......+..+.+.|+|||+|++....
T Consensus 133 ~~~fD~ifiD~d-----k~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 133 AGTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp TTCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred cCCccEEEEeCC-----HHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 468999998533 235677889999999999999875443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=7.5e-11 Score=95.01 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=81.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDlV~ 235 (280)
.+.+|||++||+|.++...+.+++.+|++||.++.+++.+++++...+. .+..++..|+..+ .....+||+|+
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~------~~~~ii~~d~~~~l~~~~~~fDlIf 116 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNAMSFLAQKGTPHNIVF 116 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc------cceeeeeecccccccccccccCEEE
Confidence 3468999999999999999999999999999999999999999876432 4578888887654 23347899999
Q ss_pred ccchhhcCChhhHHHHHHHHHH--cCCCCcEEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii~ 268 (280)
+.-.... .....++..+.+ +|+|+|++++-
T Consensus 117 ~DPPY~~---~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 117 VDPPFRR---GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ECCSSST---TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EcCcccc---chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 9754322 244567777665 69999999884
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=8.2e-11 Score=97.13 Aligned_cols=117 Identities=9% Similarity=0.115 Sum_probs=85.2
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEE
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~ 217 (280)
.+|..++.. .++.+|||+|||+|..+..+++... .+|+++|+++.+++.|++++...|+ ..+++++
T Consensus 46 ~lL~~lv~~-------~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl-----~~~i~l~ 113 (214)
T d2cl5a1 46 QIMDAVIRE-------YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL-----QDKVTIL 113 (214)
T ss_dssp HHHHHHHHH-------HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEE
T ss_pred HHHHHHHHh-------hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC-----Cccceee
Confidence 566666653 3567999999999999999886532 2799999999999999999887665 5679999
Q ss_pred EccCCCCC------CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 218 CVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 218 ~~d~~~~~------~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.+|..+.- ...++||+|++...-... .....+.+..++|||||+|++ ||+.
T Consensus 114 ~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~---~~~~~l~~~~~lLkpGGvIv~-Ddvl 170 (214)
T d2cl5a1 114 NGASQDLIPQLKKKYDVDTLDMVFLDHWKDRY---LPDTLLLEKCGLLRKGTVLLA-DNVI 170 (214)
T ss_dssp ESCHHHHGGGHHHHSCCCCEEEEEECSCGGGH---HHHHHHHHHTTCEEEEEEEEE-SCCC
T ss_pred eccccccccchhhcccccccceeeeccccccc---ccHHHHHHHhCccCCCcEEEE-eCcC
Confidence 99876531 233689999976321110 112346677889999997654 5554
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.04 E-value=5e-10 Score=94.07 Aligned_cols=101 Identities=15% Similarity=0.243 Sum_probs=82.2
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
...+|||||||+|.++..++++++. +++++|..+. ++.+ ....++.+...|+.+-. + ..|+++
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~------------~~~~r~~~~~~d~~~~~-P--~ad~~~ 144 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA------------PSYPGVEHVGGDMFVSI-P--KADAVF 144 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC------------CCCTTEEEEECCTTTCC-C--CCSCEE
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc------------ccCCceEEecccccccC-C--CcceEE
Confidence 3468999999999999999999887 8999997542 3211 11467999999986532 2 357788
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
+.+++|..++++...+|+++++.|+|||.++|.|.+..
T Consensus 145 l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~ 182 (243)
T d1kyza2 145 MKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILP 182 (243)
T ss_dssp CSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEEC
T ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEec
Confidence 89999999999999999999999999999999998754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.03 E-value=1.1e-10 Score=93.98 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=81.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD 232 (280)
.+.+|||++||+|.++...+.+|...|++||.++.+++.+++++...+. ..++++++.|+..+- ....+||
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~-----~~~~~i~~~D~~~~l~~~~~~~~~fD 115 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMDANRALEQFYEEKLQFD 115 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc-----ccccccccccchhhhhhhcccCCCcc
Confidence 5679999999999999999999999999999999999999999876543 457899999976531 2335899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHH--cCCCCcEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVL 267 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii 267 (280)
+|++.--.. ..+....+..+.+ +|+|+|++++
T Consensus 116 lIflDPPY~---~~~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 116 LVLLDPPYA---KQEIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp EEEECCCGG---GCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eEEechhhh---hhHHHHHHHHHHHCCCCCCCEEEEE
Confidence 999874432 1245567777754 6999998876
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.98 E-value=6.7e-10 Score=94.55 Aligned_cols=106 Identities=13% Similarity=-0.004 Sum_probs=74.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~ 235 (280)
+..+|+|+|||+|..+..++.....+|+++|+|+.+++.|++|++..++ ..++.+...|+.+.. ...++||+|+
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~-----~~~~~i~~~~~~~~~~~~~~~fDlIV 184 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-----SDRFFVRKGEFLEPFKEKFASIEMIL 184 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTSEEEEESSTTGGGGGGTTTCCEEE
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCC-----CceeEEeecccccccccccCcccEEE
Confidence 3458999999999999988755334899999999999999999987655 456778888886643 2236899999
Q ss_pred ccch--h--hcCCh--------------hhHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWC--I--GHLTD--------------DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~--l--~~~~~--------------~d~~~~l~~~~r~LkpGG~lii 267 (280)
++-- - ..++. +-+.-+-+-+.+.|+|||++++
T Consensus 185 sNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~ 234 (271)
T d1nv8a_ 185 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 234 (271)
T ss_dssp ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred EcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE
Confidence 8822 0 01110 0011122225678999998877
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.1e-09 Score=92.44 Aligned_cols=107 Identities=12% Similarity=-0.013 Sum_probs=77.1
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------CCC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET 228 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 228 (280)
.+..++||+|||+|.++..++.+.+. +++++|+|+.+++.|++++..+++ ..++.+...+..+.. ...
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l-----~~~~~~~~~~~~~~~~~~~~~~~~ 134 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----SDLIKVVKVPQKTLLMDALKEESE 134 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTCSSTTTSTTCCS
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC-----CcceeeeeeccHHhhhhhhhhccc
Confidence 34568999999999999988887554 899999999999999999988765 456777765543321 234
Q ss_pred CcEEEEEccchhhcCCh---------------------------------hhHHHHHHHHHHcCCCCcEEEE
Q 023562 229 GRYDVIWVQWCIGHLTD---------------------------------DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~---------------------------------~d~~~~l~~~~r~LkpGG~lii 267 (280)
++||+|+|+--+..-.+ .-+..++++....++..|++.+
T Consensus 135 ~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~ 206 (250)
T d2h00a1 135 IIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSC 206 (250)
T ss_dssp CCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEE
T ss_pred CceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEE
Confidence 68999999844332110 0145566777788898888754
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.94 E-value=4e-10 Score=93.66 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=84.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------CC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------PE 227 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~ 227 (280)
++.+|||+|+++|..+..+++.... +|+.+|.++...+.|++++...|+ ..+++++.++..+.- ..
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~-----~~~i~~~~g~a~~~L~~l~~~~~~ 133 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPALPVLDEMIKDEKN 133 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHCGGG
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc-----ccceeeeehHHHHHHHHHHhcccc
Confidence 5679999999999999999876432 899999999999999999988765 578999999876531 12
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.++||+|+.-.- .......++.+.++|+|||+|++. |+
T Consensus 134 ~~~fD~iFiDa~-----k~~y~~~~e~~~~ll~~gGiii~D-Nv 171 (227)
T d1susa1 134 HGSYDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYD-NT 171 (227)
T ss_dssp TTCBSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEE-TT
T ss_pred CCceeEEEeccc-----hhhhHHHHHHHHhhcCCCcEEEEc-cC
Confidence 368999998532 235678999999999999998775 54
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.92 E-value=4e-10 Score=96.44 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=82.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCC----CCCCCcceeEEEccCCCCCCCCCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM----APDMHKATNFFCVPLQDFTPETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~----~~~~~~~i~~~~~d~~~~~~~~~~ 230 (280)
..++.+||.+|+|.|..+..++++...+|++||+++.+++.|++.+...... ......+++++.+|...+-...++
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 3467899999999999999888766668999999999999999877542110 001246789999988665323478
Q ss_pred EEEEEccchhhcCChhhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 231 YDVIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
||+|++-..-..-+...+ .+|++.+++.|+|||++++-
T Consensus 150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 999996432111111111 58999999999999998874
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=2.1e-08 Score=81.76 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=82.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|+|+|+|.|.-+..++-..++ +++.+|.+..=+...++.....++ .++++++..++++... .+||+|+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~~~~~-~~fD~V~ 137 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSRVEEFPSE-PPFDGVI 137 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECCTTTSCCC-SCEEEEE
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC------cceeeeccchhhhccc-cccceeh
Confidence 3468999999999999988877776 899999999998888887766544 5799999999987644 6899998
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+..+- .+..++.-+...+++||.+++.
T Consensus 138 sRA~~------~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 138 SRAFA------SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CSCSS------SHHHHHHHHTTSEEEEEEEEEE
T ss_pred hhhhc------CHHHHHHHHHHhcCCCcEEEEE
Confidence 87552 4568999999999999999886
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.77 E-value=2.2e-09 Score=93.26 Aligned_cols=112 Identities=16% Similarity=0.285 Sum_probs=80.5
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDl 233 (280)
..+.+||.+|+|.|..+..+++.. ..+|++||+++.+++.|++.+...+. ......+++++.+|...+- ..+.+||+
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccccc-CccCCCceEEEEchHHHHhhhcCCcccE
Confidence 467899999999999999888664 34899999999999999998743110 0011357899999987752 22368999
Q ss_pred EEccch--hhcC-ChhhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWC--IGHL-TDDDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~--l~~~-~~~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
|++-.. ...- +...+ .+|++.+++.|+|||++++-
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 995421 1110 11112 57999999999999999873
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.75 E-value=9.1e-09 Score=89.75 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=81.7
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhc----CC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY----FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~----~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~ 213 (280)
.++..++...+. ..++.+|||.|||+|.+...+..+. .. .++|+|+++.+++.|+.+.... ...
T Consensus 103 ~~m~~l~~~~~~---~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~-------~~~ 172 (328)
T d2f8la1 103 FIVAYLLEKVIQ---KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-------RQK 172 (328)
T ss_dssp HHHHHHHHHHHT---TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-------TCC
T ss_pred HHHHHHHHHHhC---CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh-------hhh
Confidence 344444443322 4566799999999999998876542 11 6999999999999999876543 234
Q ss_pred eeEEEccCCCCCCCCCcEEEEEccchhhcCChh----------------hHHHHHHHHHHcCCCCcEEEEE
Q 023562 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDD----------------DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 214 i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~----------------d~~~~l~~~~r~LkpGG~lii~ 268 (280)
..+...|...... ..+||+|+++-.+...... -...|+..+.+.|+|||++++.
T Consensus 173 ~~~~~~d~~~~~~-~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I 242 (328)
T d2f8la1 173 MTLLHQDGLANLL-VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL 242 (328)
T ss_dssp CEEEESCTTSCCC-CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhhhccccccccc-cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEE
Confidence 5667776544433 3689999998544321111 1235899999999999987665
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.72 E-value=1.2e-08 Score=81.72 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=77.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC---CCCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~fDl 233 (280)
.+.+|||+.||+|.++...+.+|...|+.||.+...++..+++++..+.. .....+...|..++ .....+||+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~----~~~~~~~~~d~~~~l~~~~~~~~fDl 118 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVINQSSLDFLKQPQNQPHFDV 118 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc----ccccccccccccccccccccCCcccE
Confidence 34689999999999999999999999999999999999999998764331 22355555554332 233457999
Q ss_pred EEccchhhcCChhhHHHHHHHHHH--cCCCCcEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVL 267 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii 267 (280)
|++.--... ......+..+.. +|+++|++++
T Consensus 119 IFlDPPY~~---~~~~~~l~~l~~~~~L~~~~liii 151 (183)
T d2ifta1 119 VFLDPPFHF---NLAEQAISLLCENNWLKPNALIYV 151 (183)
T ss_dssp EEECCCSSS---CHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEechhHhh---hhHHHHHHHHHHhCCcCCCcEEEE
Confidence 998754332 245577777765 7999998887
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.67 E-value=1.8e-08 Score=86.48 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=79.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDl 233 (280)
..+.+||-+|.|.|..+..++++. ..+|++||+++.+++.+++.+..... .-...+++++.+|...+- ..+++||+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~--~~~d~rv~v~~~Da~~~l~~~~~~yDv 165 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVRKFKNEFDV 165 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcc--cccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence 457899999999999999998664 34899999999999999997753210 011367889999876653 23468999
Q ss_pred EEccchhhc-CChhh--HHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGH-LTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~-~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (280)
|++-..-.. .+... -.++++.+++.|+|||++++-
T Consensus 166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 996532111 11111 158999999999999999875
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.65 E-value=1.5e-08 Score=87.43 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=79.4
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDl 233 (280)
..+.+||-+|.|.|..+..++++.. .+|+.||+++.+++.+++.+....- .....+++++..|...+- ....+||+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~--~~~dprv~i~i~Da~~~l~~~~~~yDv 182 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSHPKLDLFCGDGFEFLKNHKNEFDV 182 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG--GGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcc--ccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence 4577999999999999999986543 4899999999999999998764311 112467888888876652 23478999
Q ss_pred EEccchhhcCChhh--HHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (280)
|++-..-..-+... -..|++.+++.|+|||+++.-
T Consensus 183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp EEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 99753211111112 257999999999999999885
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.65 E-value=3.5e-08 Score=84.54 Aligned_cols=112 Identities=17% Similarity=0.210 Sum_probs=81.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~f 231 (280)
..++.+||-+|.|.|..+..+++... .+|++||+++.+++.+++.+..... .....+++++..|...+- ...++|
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~--~~~~~r~~i~~~Da~~~l~~~~~~~y 155 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI--GYEDPRVNLVIGDGVAFLKNAAEGSY 155 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhc--cccCCCcEEEEccHHHHHhhccccCc
Confidence 34678999999999999999886633 4899999999999999997743110 111467888988865542 334689
Q ss_pred EEEEccchhhcCChhhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
|+|++-..-..-....+ ..|++.+++.|+|||++++-
T Consensus 156 DvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 156 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 99996422111111122 57999999999999999885
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.63 E-value=3.8e-08 Score=81.87 Aligned_cols=74 Identities=20% Similarity=0.216 Sum_probs=61.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.+|..|++.+. +|+++|+++.+++..+++... ..+++++.+|+.+++.+......|
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~--------~~n~~i~~~D~l~~~~~~~~~~~v 89 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDILQFKFPKNQSYKI 89 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGGGCCCCSSCCCEE
T ss_pred CCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhc--------ccchhhhhhhhhhcccccccccee
Confidence 56788999999999999999998754 699999999999999998866 468999999999887553333345
Q ss_pred Ecc
Q 023562 235 WVQ 237 (280)
Q Consensus 235 ~~~ 237 (280)
+++
T Consensus 90 v~N 92 (235)
T d1qama_ 90 FGN 92 (235)
T ss_dssp EEE
T ss_pred eee
Confidence 554
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.63 E-value=1.8e-08 Score=85.82 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=81.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDl 233 (280)
.++.+||-+|.|.|..+..++++. ..+|+.||+++.+++.|++.+..... .....+++++.+|...+- ....+||+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~--~~~d~r~~i~~~D~~~~l~~~~~~yDv 151 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG--KLDDPRVDVQVDDGFMHIAKSENQYDV 151 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT--TTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcc--cccCCCeEEEechHHHHHhhcCCCCCE
Confidence 456899999999999999988653 45899999999999999998743210 112467899999976652 23478999
Q ss_pred EEccchhhcCChhh--HHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (280)
|++-..-..-.... -.+|++.+++.|+|||+++.-
T Consensus 152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 99653211000011 247999999999999999874
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.7e-08 Score=86.37 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=80.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD 232 (280)
...+.+||-+|.|.|..+..+++.. ..+|+.||+++.+++.|++.+..... .....+++++..|...+- ...++||
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~--~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI--GYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcc--ccCCCCceEEEccHHHHHhcCCCCCC
Confidence 3467899999999999999998653 45899999999999999998743100 011467899999876652 2346899
Q ss_pred EEEccchhhcCChhhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++-..-..-....+ ..|++.+++.|+|||++++-
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 9997522111011111 47999999999999999875
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.54 E-value=6.3e-08 Score=79.03 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=70.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||.|||+|.++..+.+.... .++++|+++.+++.+ ....+.++|....... .+||
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------------~~~~~~~~~~~~~~~~-~~fd 80 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFLLWEPG-EAFD 80 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGGGCCCS-SCEE
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------------ccceeeeeehhccccc-cccc
Confidence 456789999999999999888776444 699999988654321 2356677776655543 6899
Q ss_pred EEEccchhhcCCh--------------------------h-hHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTD--------------------------D-DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~--------------------------~-d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|+++..+..... . -...|+..+.+.|+|||++.+.
T Consensus 81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I 143 (223)
T d2ih2a1 81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV 143 (223)
T ss_dssp EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEE
Confidence 9998854322110 0 1346788999999999998776
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.52 E-value=1.3e-08 Score=85.15 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=69.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..+..+|||||||+|.+|..|++.+. +|+++|+++.+++.+++++.. ..+++++++|+.+++.+...++.|
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~--------~~n~~ii~~D~l~~~~~~~~~~~v 97 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL--------NTRVTLIHQDILQFQFPNKQRYKI 97 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT--------CSEEEECCSCCTTTTCCCSSEEEE
T ss_pred CCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhh--------ccchhhhhhhhhccccccceeeeE
Confidence 45678999999999999999998755 699999999999988877654 468999999999988776677777
Q ss_pred EccchhhcCChhhHHHHH
Q 023562 235 WVQWCIGHLTDDDFVSFF 252 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l 252 (280)
+++... |++.+-+..++
T Consensus 98 v~NLPY-~Ist~il~~~l 114 (245)
T d1yuba_ 98 VGNIPY-HLSTQIIKKVV 114 (245)
T ss_dssp EEECCS-SSCHHHHHHHH
T ss_pred eeeeeh-hhhHHHHHHHh
Confidence 776554 66644444444
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=5.7e-07 Score=78.92 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=74.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 230 (280)
..++.+|||+-||+|.++..|+++ +.+|+++|.++.+++.|++++..+++ .|+.|+.++.++.. ....+
T Consensus 210 ~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i------~n~~~~~~~~~~~~~~~~~~~~~ 282 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL------QNVTFYHENLEEDVTKQPWAKNG 282 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCTTSCCSSSGGGTTC
T ss_pred cCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhccc------ccceeeecchhhhhhhhhhhhcc
Confidence 456679999999999999988755 45799999999999999999887765 67899999887643 12357
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
||+|+..--=.- +.++++.+.+. +|.-+++++
T Consensus 283 ~d~vilDPPR~G-----~~~~~~~l~~~-~~~~ivYVS 314 (358)
T d1uwva2 283 FDKVLLDPARAG-----AAGVMQQIIKL-EPIRIVYVS 314 (358)
T ss_dssp CSEEEECCCTTC-----CHHHHHHHHHH-CCSEEEEEE
T ss_pred CceEEeCCCCcc-----HHHHHHHHHHc-CCCEEEEEe
Confidence 899987522111 12455555553 677777776
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.39 E-value=4.4e-07 Score=72.26 Aligned_cols=105 Identities=20% Similarity=0.145 Sum_probs=80.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 229 (280)
+.++..++|+.||.|..+..++++.. +|.++|..+.+++.++... ..++.+++.+..++. ...+
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~----------~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLH----------LPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC----------CTTEEEEESCGGGHHHHHHHTTCS
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhcc----------ccceeEeehHHHHHHHHHHHcCCC
Confidence 56788999999999999999998865 6999999999999998753 246888888776653 2336
Q ss_pred cEEEEEccchh--hcCCh-----hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 230 RYDVIWVQWCI--GHLTD-----DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 230 ~fDlV~~~~~l--~~~~~-----~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++|.|+....+ .++.+ ..+...|....+.|+|||.+++...
T Consensus 85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 79999864221 11111 2345688899999999999998754
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.29 E-value=4.8e-07 Score=74.99 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=78.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC---CCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~fD 232 (280)
...+|+|+|+|.|.-+..++-..++ +++.+|.+..=+.+.+......++ .++.+++..++++.. ..++||
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L------~n~~i~~~R~E~~~~~~~~~~~~D 143 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAETFGQRKDVRESYD 143 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHHHTTCTTTTTCEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC------CCcEEEeehhhhccccccccccce
Confidence 4568999999999999988765554 899999999988887776665544 567888887765532 236899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++.-+- .+..++.-+...+++||.+++.
T Consensus 144 ~v~sRAva------~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 144 IVTARAVA------RLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp EEEEECCS------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEhhhh------CHHHHHHHHhhhcccCCEEEEE
Confidence 99997552 5668999999999999999885
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.22 E-value=1.9e-05 Score=65.04 Aligned_cols=104 Identities=13% Similarity=-0.069 Sum_probs=61.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc-eeEEEc-cCCCCCCCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCV-PLQDFTPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~-i~~~~~-d~~~~~~~~~~f 231 (280)
..+..+|+|+|||+|.++..++.+.. ..|.++++--.. ............+ +++... |+.. .+++++
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~--------~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~ 133 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG--------HEEPIPMSTYGWNLVRLQSGVDVFF--IPPERC 133 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT--------SCCCCCCCSTTGGGEEEECSCCTTT--SCCCCC
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc--------ccCCccccccccccccchhhhhHHh--cCCCcC
Confidence 45677999999999999998876532 257777763110 0000111111122 233332 3322 334789
Q ss_pred EEEEccchhhcCCh----hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIWVQWCIGHLTD----DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~~----~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+|+|-.+-..-.+ .....+++-+.+.|+|||.|++.
T Consensus 134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 99998754321111 11236788888999999998885
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=1.9e-06 Score=68.41 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=69.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
.+++.+|||+||++|.++..+.+... ..+.++|+.+. .. ..++.++.+|+.+..
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~--------i~~~~~~~~d~~~~~~~~~~~~ 82 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DP--------IVGVDFLQGDFRDELVMKALLE 82 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CC--------CTTEEEEESCTTSHHHHHHHHH
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cc--------cCCceEeecccccchhhhhhhh
Confidence 35677999999999999998887633 27999997541 11 356889999987642
Q ss_pred -CCCCcEEEEEccchhhcCCh--------hh-HHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 -PETGRYDVIWVQWCIGHLTD--------DD-FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~~~~~--------~d-~~~~l~~~~r~LkpGG~lii~e 269 (280)
....+||+|++-.+..--.. -+ ....+.-+.+.|++||.|++.=
T Consensus 83 ~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 22368999998754322111 11 2467778889999999999974
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.07 E-value=6.5e-06 Score=73.78 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=77.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--------------CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--------------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--------------~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d 220 (280)
+..+.+|+|-.||+|.+...+.++.. ..+.|+|+++.+...|+.+..-.+.. ....++...|
T Consensus 160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~----~~~~~i~~~d 235 (425)
T d2okca1 160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----TDRSPIVCED 235 (425)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----SSCCSEEECC
T ss_pred CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc----cccceeecCc
Confidence 45668999999999999887765421 15999999999999998876543321 2245667777
Q ss_pred CCCCCCCCCcEEEEEccchhhcCCh---------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 221 LQDFTPETGRYDVIWVQWCIGHLTD---------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 221 ~~~~~~~~~~fDlV~~~~~l~~~~~---------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
...... ..+||+|+++--+..-.. ..-..|+..+.+.|+|||.+.+.
T Consensus 236 ~l~~~~-~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI 297 (425)
T d2okca1 236 SLEKEP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 297 (425)
T ss_dssp TTTSCC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhc-ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEE
Confidence 655443 368999999854432111 11246999999999999987765
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.07 E-value=7.3e-06 Score=70.52 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=78.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
+.++.+|||++||+|.=+..+++.... .++++|.++.-+...++++...+. .++.....|...++.....||
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~------~~i~~~~~d~~~~~~~~~~fD 187 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIGELNVEFD 187 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGGGGCCCEE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh------hcccccccccccccccccccc
Confidence 567789999999999999888766443 699999999999999988877543 456666666665554457899
Q ss_pred EEEc----c--chhhcCC-------hhh-------HHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWV----Q--WCIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~----~--~~l~~~~-------~~d-------~~~~l~~~~r~LkpGG~lii~ 268 (280)
.|++ + .++..-+ ..+ ...++.++.+.|||||.++.+
T Consensus 188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYs 243 (313)
T d1ixka_ 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 243 (313)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEe
Confidence 9984 2 2232221 111 356888999999999988765
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=8.3e-06 Score=68.89 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=61.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++..|||+|+|+|.+|..|++++. +|+++|+++.+++..++.+..... ..+++++.+|+..+..+ .++.|
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~-----~~~~~~i~~D~l~~~~~--~~~~v 90 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPV-----ASKLQVLVGDVLKTDLP--FFDTC 90 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEESCTTTSCCC--CCSEE
T ss_pred CCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhcc-----ccchhhhHHHHhhhhhh--hhhhh
Confidence 45677999999999999999998865 799999999999999998865322 46799999999887654 34566
Q ss_pred Eccch
Q 023562 235 WVQWC 239 (280)
Q Consensus 235 ~~~~~ 239 (280)
+++--
T Consensus 91 V~NLP 95 (278)
T d1zq9a1 91 VANLP 95 (278)
T ss_dssp EEECC
T ss_pred hcchH
Confidence 66643
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.98 E-value=4.7e-06 Score=68.62 Aligned_cols=110 Identities=12% Similarity=0.070 Sum_probs=70.6
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHh----cC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcce
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR----YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~----~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i 214 (280)
..++.++.+. +|.+|||+|++.|..+..++.. +. .+|+++|+.+........ ...++
T Consensus 70 ~~~~eli~~~-------KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~-----------~~~~I 131 (232)
T d2bm8a1 70 AVYHDMLWEL-------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----------DMENI 131 (232)
T ss_dssp HHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----------GCTTE
T ss_pred HHHHHHHHHh-------CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc-----------cccce
Confidence 4455566542 5679999999999877755532 22 279999997654322111 13679
Q ss_pred eEEEccCCCCC----CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 215 NFFCVPLQDFT----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 215 ~~~~~d~~~~~----~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+++.+|..+.. .....+|+|+.-.. |.....+..+ .+...|+|||+++|-|++
T Consensus 132 ~~i~gDs~~~~~~~~l~~~~~dlIfID~~--H~~~~v~~~~--~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 132 TLHQGDCSDLTTFEHLREMAHPLIFIDNA--HANTFNIMKW--AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp EEEECCSSCSGGGGGGSSSCSSEEEEESS--CSSHHHHHHH--HHHHTCCTTCEEEECSCH
T ss_pred eeeecccccHHHHHHHHhcCCCEEEEcCC--cchHHHHHHH--HHhcccCcCCEEEEEcCC
Confidence 99999876542 22346788876543 3332233333 356899999999998875
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=2.1e-05 Score=66.69 Aligned_cols=108 Identities=19% Similarity=0.073 Sum_probs=76.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD 232 (280)
+.++.+|||+++|+|.-+..+++.... .|+++|+++.-+...++++...|. .++.....+..... ...+.||
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~------~~~~~~~~~~~~~~~~~~~~fd 173 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM------KATVKQGDGRYPSQWCGEQQFD 173 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC------CCEEEECCTTCTHHHHTTCCEE
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc------cceeeeccccccchhccccccc
Confidence 567789999999999999999876554 799999999999999999887643 22333333322211 2236899
Q ss_pred EEEc----c--chhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWV----Q--WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~----~--~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~ 268 (280)
.|++ + .++..-++ .+ ...++.++.+.|||||.++.+
T Consensus 174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYs 229 (284)
T d1sqga2 174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA 229 (284)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 9983 2 33433222 11 357889999999999988775
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.92 E-value=6.5e-06 Score=68.63 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=53.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 225 (280)
..++..|||+|||+|.+|..|++.+ .+|+++|+++.+++..+++... ..+++++.+|+..++
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~--------~~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFL--------GPKLTIYQQDAMTFN 80 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTT--------GGGEEEECSCGGGCC
T ss_pred CCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhh--------ccchhHHhhhhhhhc
Confidence 4567799999999999999999765 4699999999999999886654 468999999998765
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.90 E-value=6.2e-06 Score=72.66 Aligned_cols=106 Identities=12% Similarity=0.028 Sum_probs=76.1
Q ss_pred CCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCC---------CCcceeEEEccCCCCC-
Q 023562 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPD---------MHKATNFFCVPLQDFT- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~---------~~~~i~~~~~d~~~~~- 225 (280)
++.+|||..||+|..++..+.. +...|+++|+|+..++.+++|++.++..... ....+.+.+.|+..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 4568999999999999976654 5558999999999999999998766442211 0123455555543332
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.....||+|.+-- +. ....|+..+.+.++.||++.++
T Consensus 125 ~~~~~fDvIDiDP----fG--s~~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 125 ERHRYFHFIDLDP----FG--SPMEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp HSTTCEEEEEECC----SS--CCHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCcCCcccCCC----CC--CcHHHHHHHHHHhccCCEEEEE
Confidence 1235799987653 12 2237999999999999999997
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=8.7e-05 Score=62.97 Aligned_cols=76 Identities=12% Similarity=0.046 Sum_probs=60.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC---CC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~ 229 (280)
+.++.+|||++||+|.-+..+++... ..|+++|+++.-++..++++...|. .++.+...|...+... .+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~------~~~~~~~~d~~~~~~~~~~~~ 165 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSPSDPRYH 165 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCTTCGGGT
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc------cceeeeehhhhhhcccccccc
Confidence 55778999999999999998876532 2799999999999999999887654 5678888887766432 25
Q ss_pred cEEEEEc
Q 023562 230 RYDVIWV 236 (280)
Q Consensus 230 ~fDlV~~ 236 (280)
+||.|++
T Consensus 166 ~fD~VL~ 172 (293)
T d2b9ea1 166 EVHYILL 172 (293)
T ss_dssp TEEEEEE
T ss_pred eeeEEee
Confidence 7999983
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=6.8e-05 Score=68.78 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=71.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-------------------CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCccee
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-------------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-------------------~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~ 215 (280)
+.++.+|+|-.||+|.+.....+.. ...+.|+|+++.+...|+-+.--.+.. ........
T Consensus 162 ~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~-~~i~~~~~ 240 (524)
T d2ar0a1 162 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGA 240 (524)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC-CBGGGTBS
T ss_pred CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc-ccccccch
Confidence 4566799999999999987665431 115899999999999998776443221 01111223
Q ss_pred EEEccCCCCC-CCCCcEEEEEccchhhcCCh------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 216 FFCVPLQDFT-PETGRYDVIWVQWCIGHLTD------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 216 ~~~~d~~~~~-~~~~~fDlV~~~~~l~~~~~------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+...+....+ ....+||+|+++--+..-.+ ..--.|+..+.+.|+|||++.+.
T Consensus 241 ~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiI 306 (524)
T d2ar0a1 241 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 306 (524)
T ss_dssp EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEE
Confidence 3444332211 12357999999844321110 01235999999999999987776
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.83 E-value=0.002 Score=50.83 Aligned_cols=103 Identities=8% Similarity=-0.157 Sum_probs=66.3
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
.+++.+||-+|||. |..+..+++. +...|.++|.++.-++.|++.-... ++...-+++. .
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~------------~~~~~~~~~~~~i~~~t 90 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEI------------ADLSLDTPLHEQIAALL 90 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEE------------EETTSSSCHHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccE------------EEeCCCcCHHHHHHHHh
Confidence 56788999999998 6566666654 5558999999999999998864321 1110001110 1
Q ss_pred CCCcEEEEEccchh-------hcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 227 ETGRYDVIWVQWCI-------GHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 227 ~~~~fDlV~~~~~l-------~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
....+|+++-.-.. +.+........++.+.+.++|||.+++.-
T Consensus 91 ~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 91 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 12468998843211 11111122468999999999999998874
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.81 E-value=0.0052 Score=46.81 Aligned_cols=96 Identities=16% Similarity=0.032 Sum_probs=63.8
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C-------
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T------- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~------- 225 (280)
.+++.+||-+||| .|.++..+++....+|+++|.++.-++.|++.... ..+...+..+. .
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~-----------~~~~~~~~~~~~~~~~~~~~ 92 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD-----------VTLVVDPAKEEESSIIERIR 92 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-----------EEEECCTTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc-----------EEEeccccccccchhhhhhh
Confidence 5567899999998 56677777766555899999999999999886433 11111111110 0
Q ss_pred -CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.....+|+|+-.-.- ...+..+.++|+|+|.+++.-
T Consensus 93 ~~~g~g~D~vid~~g~--------~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 93 SAIGDLPNVTIDCSGN--------EKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp HHSSSCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECS
T ss_pred cccccCCceeeecCCC--------hHHHHHHHHHHhcCCceEEEe
Confidence 012457888754221 157888889999999999864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.77 E-value=0.0035 Score=48.52 Aligned_cols=97 Identities=16% Similarity=0.051 Sum_probs=63.0
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC-------CCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-------QDFT 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~-------~~~~ 225 (280)
.+++.+||-+|||. |..+..+++... .+|+++|.++.-++.+++.-... -++....+. .+.
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~~~~i~~~- 95 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL---------TLNRRETSVEERRKAIMDI- 95 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE---------EEETTTSCHHHHHHHHHHH-
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceE---------EEeccccchHHHHHHHHHh-
Confidence 45678999999984 667777776644 47999999999999998763221 010001111 111
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.....+|+|+-.-.- ...++.+.+.|+|||.+++.-
T Consensus 96 ~~~~g~Dvvid~vG~--------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 96 THGRGADFILEATGD--------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp TTTSCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECC
T ss_pred hCCCCceEEeecCCc--------hhHHHHHHHHhcCCCEEEEEe
Confidence 112469998854221 146778889999999998764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.00038 Score=53.67 Aligned_cols=97 Identities=19% Similarity=0.090 Sum_probs=63.4
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE-ccCCCC-CCCCCcE
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDF-TPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~-~d~~~~-~~~~~~f 231 (280)
..++.+||-+|+| .|.++..+++....+|+++|.|+.-++.+++.-... ++. .+-.++ ....+.|
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~------------~i~~~~~~~~~~~~~~~~ 92 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADH------------YIATLEEGDWGEKYFDTF 92 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSE------------EEEGGGTSCHHHHSCSCE
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcE------------EeeccchHHHHHhhhccc
Confidence 5678899999998 677777777654457999999999999998864321 111 111111 1123579
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|+..-.-.+ + ..+..+.+.|+|+|.+++.-
T Consensus 93 d~vi~~~~~~~----~--~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 93 DLIVVCASSLT----D--IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EEEEECCSCST----T--CCTTTGGGGEEEEEEEEECC
T ss_pred ceEEEEecCCc----c--chHHHHHHHhhccceEEEec
Confidence 99886532211 1 12445788999999998863
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.71 E-value=0.0015 Score=55.80 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=48.5
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~ 223 (280)
+...|||+|.|.|.+|..|++.+ +.+|+++|+++...+..++.+.. .+++++.+|+..
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~---------~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG---------SPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT---------SSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC---------CCcEEEeCchhh
Confidence 45689999999999999999874 45899999999999999988753 457788887754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.69 E-value=0.004 Score=48.03 Aligned_cols=95 Identities=13% Similarity=-0.014 Sum_probs=64.3
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
.+++.+||=+|||. |..+..+++... .+|+++|.+++-++.+++.-.. .++...-+++. .
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~------------~~i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT------------DILNYKNGHIEDQVMKLT 92 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS------------EEECGGGSCHHHHHHHHT
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc------------ccccccchhHHHHHHHHh
Confidence 56778999999997 778887877644 4799999999999999876332 11111111110 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
....+|+|+-+-.- . ..++...+.++|+|.+++.-
T Consensus 93 ~g~G~D~vid~~g~------~--~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 93 NGKGVDRVIMAGGG------S--ETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TTSCEEEEEECSSC------T--THHHHHHHHEEEEEEEEECC
T ss_pred hccCcceEEEccCC------H--HHHHHHHHHHhcCCEEEEEe
Confidence 22459998765321 1 46777889999999999853
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.0055 Score=46.94 Aligned_cols=93 Identities=13% Similarity=0.050 Sum_probs=63.7
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
..++.+||-.|+ |.|..+..+++....+|++++.|++-++.+++.-.. .++...-.++. .
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~------------~vi~~~~~~~~~~i~~~t 93 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH------------EVFNHREVNYIDKIKKYV 93 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEEETTSTTHHHHHHHHH
T ss_pred CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcc------------cccccccccHHHHhhhhh
Confidence 557789999996 677888888877555799999899888888875322 11111111110 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
....+|+|+.+-. . ..++...++|+|+|.++..
T Consensus 94 ~~~g~d~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 94 GEKGIDIIIEMLA-------N--VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp CTTCEEEEEESCH-------H--HHHHHHHHHEEEEEEEEEC
T ss_pred ccCCceEEeeccc-------H--HHHHHHHhccCCCCEEEEE
Confidence 2357999987533 2 4677788999999999885
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.28 E-value=0.0075 Score=51.94 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=72.8
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHH-------H-h----c--CC---cEEEEeCCHHHHHHHHHHcC
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL-------I-R----Y--FN---EVDLLEPVSHFLDAARESLA 201 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~-------~-~----~--~~---~v~~vD~S~~~l~~A~~~~~ 201 (280)
..++...+...+.........+|+|+||..|..+..+. + . + .. +|..-|.-..=-...=+.+.
T Consensus 33 kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~ 112 (359)
T d1m6ex_ 33 KPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP 112 (359)
T ss_dssp HHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTT
T ss_pred HHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcc
Confidence 34555555544321112344789999999998764222 1 1 1 11 66777744332222222222
Q ss_pred cCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCCh-------------------------------hhHHH
Q 023562 202 PENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------DDFVS 250 (280)
Q Consensus 202 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~-------------------------------~d~~~ 250 (280)
...- .....-+..+.+.+-.--+++++.++++|++++|+++. .|+..
T Consensus 113 ~~~~--~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~ 190 (359)
T d1m6ex_ 113 IEND--VDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHAL 190 (359)
T ss_dssp TSCS--CTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHH
T ss_pred cccc--CCCCeEEEecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 1100 00000111222344333356689999999999999752 15778
Q ss_pred HHHHHHHcCCCCcEEEEEe
Q 023562 251 FFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 251 ~l~~~~r~LkpGG~lii~e 269 (280)
||+.=++-|+|||.++++=
T Consensus 191 FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 191 FLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp HHHHHHHHBCTTCEEEEEE
T ss_pred HHHHHHHHhcCCcEEEEEE
Confidence 9999999999999999863
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.27 E-value=0.00078 Score=55.39 Aligned_cols=83 Identities=17% Similarity=0.067 Sum_probs=56.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCC---CCCcceeEEEccCCCCC-CCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP---DMHKATNFFCVPLQDFT-PETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~---~~~~~i~~~~~d~~~~~-~~~~~fD 232 (280)
...+|||+-||.|..+..++..+. +|+++|-|+.+....+..+........ ....+++++++|..++- ....+||
T Consensus 88 ~~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 88 YLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp BCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 345899999999999999887776 599999999876665544332110000 01247899999865542 2236799
Q ss_pred EEEccchh
Q 023562 233 VIWVQWCI 240 (280)
Q Consensus 233 lV~~~~~l 240 (280)
+|+.--.+
T Consensus 167 vIYlDPMF 174 (250)
T d2oyra1 167 VVYLDPMF 174 (250)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99965444
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.13 E-value=0.011 Score=49.18 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=69.1
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEEEcc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQ 237 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV~~~ 237 (280)
++|||+=||.|.++..+-+.++..+.++|+++.+.+.-+.++.. .....|+.++... -...|+++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~------------~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA------------KLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCS------------EEEESCTTTSCGGGSCCCSEEEEC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC------------CCccCChhhCCHhHcccccEEeec
Confidence 37999999999999999888988888999999999988888643 3567888887532 2468999843
Q ss_pred c---hhhc------CChh--hHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 238 W---CIGH------LTDD--DFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 238 ~---~l~~------~~~~--d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
. .+.- ..++ .+---+-++.+.++|. +++.|||.
T Consensus 69 ~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk--~~~lENV~ 112 (324)
T d1dcta_ 69 PPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVK 112 (324)
T ss_dssp CCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCS--EEEEEEEG
T ss_pred ccccccccccccccccccccchHHHHHHHHHhhCCc--eeeccccc
Confidence 1 1111 1111 1212233355667885 67789984
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.92 E-value=0.017 Score=43.65 Aligned_cols=93 Identities=18% Similarity=0.053 Sum_probs=59.4
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~ 228 (280)
.+++.+||=+|||. |..+..+++....+|.++|.++.-++.+++.-.. .++...-++.. ...
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~------------~~i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS------------LTVNARQEDPVEAIQRDIG 92 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHHS
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc------------ccccccchhHHHHHHHhhc
Confidence 55678899999875 4555556655545899999999999999875432 11222111110 111
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+.+|.|++... . ..++...+.|+|||.+++.
T Consensus 93 g~~~~i~~~~~-------~--~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 93 GAHGVLVTAVS-------N--SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp SEEEEEECCSC-------H--HHHHHHHTTEEEEEEEEEC
T ss_pred CCccccccccc-------c--hHHHHHHHHhcCCcEEEEE
Confidence 33455554333 1 4677888999999999885
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.027 Score=42.65 Aligned_cols=97 Identities=15% Similarity=0.025 Sum_probs=62.8
Q ss_pred CCCCccEEEeecCccH-HHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 155 NNQHLVALDCGSGIGR-ITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~-~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
..++.+||=+|||+.. .+..++.. +..+|+++|.++.-++.|++.-... +...+-++..
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~------------~~~~~~~~~~~~~~~~~ 91 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL------------VLQISKESPQEIARKVE 91 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE------------EEECSSCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcc------------ccccccccccccccccc
Confidence 5567899999997654 44444544 4447999999999999998763321 1111111110
Q ss_pred -CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.....+|+|+-.-.- . ..++.+.+.++|||.+++.-..
T Consensus 92 ~~~g~g~Dvvid~~G~------~--~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 92 GQLGCKPEVTIECTGA------E--ASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp HHHTSCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEECSCC
T ss_pred ccCCCCceEEEeccCC------c--hhHHHHHHHhcCCCEEEEEecC
Confidence 012467888764331 2 5788899999999999987543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.79 E-value=0.011 Score=49.58 Aligned_cols=101 Identities=16% Similarity=0.065 Sum_probs=69.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV~ 235 (280)
.+.+|||+=||.|.++..|-+.++..+.++|+++.+++.-+.++... .+.|+.++... ...+|+++
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-------------~~~Di~~~~~~~~~~~Dll~ 76 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-------------PEGDITQVNEKTIPDHDILC 76 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-------------CBSCGGGSCGGGSCCCSEEE
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-------------CcCchhcCchhhcceeeeee
Confidence 56899999999999999998888887888999999999999998652 23566665422 23689998
Q ss_pred ccc-----hhhc----CCh--hhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 236 VQW-----CIGH----LTD--DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 236 ~~~-----~l~~----~~~--~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
... +... ..+ ..+-..+-++.+.++|. +++.|||.
T Consensus 77 ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~--~~~lENV~ 122 (327)
T d2c7pa1 77 AGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVK 122 (327)
T ss_dssp EECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEG
T ss_pred cccccchhhhhhhhcCCcccchhHHHHHHHHHhccCCc--EEecccch
Confidence 431 1111 111 12333334455667885 66789984
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.62 E-value=0.022 Score=43.09 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=63.3
Q ss_pred CCCCccEEEeec--CccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------ 225 (280)
..++.+||=+|| |.|..+..+++. +...|+++|.++.-++.+++.-.. .++..+-.++.
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~------------~~i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD------------YVINASMQDPLAEIRRI 92 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc------------eeeccCCcCHHHHHHHH
Confidence 567789999997 355666656554 556899999999999999876322 11222212210
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
...+.||+|+-...- . ..++.+.+.++|||.+++.-
T Consensus 93 ~~~~~~d~vid~~g~------~--~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 93 TESKGVDAVIDLNNS------E--KTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp TTTSCEEEEEESCCC------H--HHHTTGGGGEEEEEEEEECC
T ss_pred hhcccchhhhccccc------c--hHHHhhhhhcccCCEEEEec
Confidence 123569999865331 1 56677889999999998873
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.58 E-value=0.021 Score=43.82 Aligned_cols=94 Identities=13% Similarity=-0.100 Sum_probs=64.1
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CC------
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT------ 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~------ 225 (280)
..++.+||=+|||. |..+..+++... ..|+.+|.++.-++.|++.-... ++...-.+ ..
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~------------~i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATD------------CLNPRELDKPVQDVITE 93 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE------------EECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCc------------ccCCccchhhhhhhHhh
Confidence 56778999999998 777887776644 47999999999999998864321 11111111 00
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCC-cEEEEE
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLK 268 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~ 268 (280)
...+.+|+|+-+-.- . ..+....+.++|| |.+++.
T Consensus 94 ~~~~G~d~vie~~G~------~--~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 94 LTAGGVDYSLDCAGT------A--QTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHTSCBSEEEESSCC------H--HHHHHHHHTBCTTTCEEEEC
T ss_pred hhcCCCcEEEEeccc------c--hHHHHHHHHhhcCCeEEEec
Confidence 112468888754221 2 5788999999996 999885
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.0062 Score=51.40 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=52.6
Q ss_pred CccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC---CCcEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYD 232 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD 232 (280)
+.+|+|+-||.|.++..|-..|+. -+.++|+++.+++..+.++.. ..+++.|+.++... ...+|
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~-----------~~~~~~di~~~~~~~~~~~~~D 70 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------TQLLAKTIEGITLEEFDRLSFD 70 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------SCEECSCGGGCCHHHHHHHCCS
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC-----------CCcccCchhhCCHhHcCCCCcc
Confidence 578999999999999988777774 477899999999999988754 34566777766421 13679
Q ss_pred EEEcc
Q 023562 233 VIWVQ 237 (280)
Q Consensus 233 lV~~~ 237 (280)
+++..
T Consensus 71 ll~gg 75 (343)
T d1g55a_ 71 MILMS 75 (343)
T ss_dssp EEEEC
T ss_pred EEEee
Confidence 88843
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.40 E-value=0.078 Score=40.17 Aligned_cols=94 Identities=13% Similarity=-0.039 Sum_probs=62.1
Q ss_pred CCCCccEEEeecCccH-HHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CC
Q 023562 155 NNQHLVALDCGSGIGR-ITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~-~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 227 (280)
..++.+||=+|||.-. .+..+++. +...|.++|.++.-++.+++.-.. .++..+-+++. ..
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~------------~~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT------------HVINSKTQDPVAAIKEIT 93 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCe------------EEEeCCCcCHHHHHHHHc
Confidence 5678899999998543 34444443 555788999999999999876322 12222212211 12
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++.||+|+-+-.- . ..++.+.++++|+|.+++.
T Consensus 94 ~gg~D~vid~~G~------~--~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 94 DGGVNFALESTGS------P--EILKQGVDALGILGKIAVV 126 (174)
T ss_dssp TSCEEEEEECSCC------H--HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCcEEEEcCCc------H--HHHHHHHhcccCceEEEEE
Confidence 3579998854221 1 5778889999999999885
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.83 E-value=0.041 Score=47.21 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=51.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcC------C--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF------N--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET 228 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~------~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 228 (280)
+..+|+|+|+|.|.++..++.... . .+..+|+|+.+.+.-++++... .++.++ .++++++.
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~--------~~i~w~-~~~~~~~~-- 147 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--------RNIHWH-DSFEDVPE-- 147 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--------SSEEEE-SSGGGSCC--
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc--------ccceec-cChhhccc--
Confidence 456899999999999988765421 1 5899999999888888877642 234332 33443331
Q ss_pred CcEEEEEccchhhcCC
Q 023562 229 GRYDVIWVQWCIGHLT 244 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~ 244 (280)
..-+|+++..+.-+|
T Consensus 148 -~~g~iiaNE~fDAlP 162 (365)
T d1zkda1 148 -GPAVILANEYFDVLP 162 (365)
T ss_dssp -SSEEEEEESSGGGSC
T ss_pred -CCeEEEecccCcccc
Confidence 225677777766665
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.045 Score=41.28 Aligned_cols=95 Identities=17% Similarity=0.020 Sum_probs=61.5
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEE
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD 232 (280)
.+++.+||=+|||. |.++..+++....+++++|.+++-++.+++.-... ++...-.+. ....+.+|
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~------------~i~~~~~~~~~~~~~~~D 95 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE------------VVNSRNADEMAAHLKSFD 95 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE------------EEETTCHHHHHTTTTCEE
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcE------------EEECchhhHHHHhcCCCc
Confidence 56788999999874 56677777665556889999999888888764331 111111110 11225799
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+++-.-.-. ..++...++++|+|.+++.-
T Consensus 96 ~vid~~g~~--------~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 96 FILNTVAAP--------HNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEEECCSSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred eeeeeeecc--------hhHHHHHHHHhcCCEEEEec
Confidence 987653211 24566778999999999863
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.58 E-value=0.074 Score=39.79 Aligned_cols=87 Identities=11% Similarity=-0.010 Sum_probs=58.0
Q ss_pred cEEEeecCc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 160 ~VLDlGcG~--G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
+|.=+|+|. +.++..|.+.++ +|++.|.+++.++.+++... +.....+++.. ...|+|+.+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~------------~~~~~~~~~~~----~~~DiIila 64 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL------------VDEAGQDLSLL----QTAKIIFLC 64 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS------------CSEEESCGGGG----TTCSEEEEC
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhc------------cceeeeecccc----ccccccccc
Confidence 567788873 345566666666 59999999999998876431 11122222222 357888764
Q ss_pred chhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
- ++.....+++++...|+++-+++-.
T Consensus 65 v-----p~~~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 65 T-----PIQLILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp S-----CHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred C-----cHhhhhhhhhhhhhhcccccceeec
Confidence 3 3456778999999999999877543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.48 E-value=0.033 Score=46.04 Aligned_cols=57 Identities=7% Similarity=-0.053 Sum_probs=46.3
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
.++.+++... ..++..|||.=||+|..+....+.+. +..|+|++++.++.|++++..
T Consensus 238 ~L~~rlI~~~-----s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 238 KLPEFFIRML-----TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHHH-----CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHhhhhc-----ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence 5666666543 34678999999999999997766554 699999999999999999876
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.43 E-value=0.079 Score=40.19 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=61.8
Q ss_pred CCCCccEEEee--cCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlG--cG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
.+++.+||=.| .|.|.++..+++.....+.++.-+++-.+.+++.-.. ..+...-.++. .
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~------------~vi~~~~~~~~~~v~~~t 90 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVE------------YVGDSRSVDFADEILELT 90 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCS------------EEEETTCSTHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccccccc------------ccccCCccCHHHHHHHHh
Confidence 45677899877 4567788888877656788888888888888764322 11111111211 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
....||+|+..-. . ..++.+.++|+|+|.++..
T Consensus 91 ~~~g~d~v~d~~g-------~--~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 91 DGYGVDVVLNSLA-------G--EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp TTCCEEEEEECCC-------T--HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCEEEEEeccc-------c--hHHHHHHHHhcCCCEEEEE
Confidence 2357999997543 1 3567778999999999885
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=94.36 E-value=0.13 Score=42.78 Aligned_cols=104 Identities=11% Similarity=-0.006 Sum_probs=70.2
Q ss_pred ccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C-------CCC
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-------PET 228 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-------~~~ 228 (280)
..|+.+|||-=.-...+ .... .+.=+| -+.+++.-++.+...+. ....+..+...|+.+- . +.+
T Consensus 91 ~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD-~p~vi~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~~~~~L~~~g~d~ 164 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRL--DWPTGTTVYEID-QPKVLAYKSTTLAEHGV---TPTADRREVPIDLRQDWPPALRSAGFDP 164 (297)
T ss_dssp CEEEEETCTTCCHHHHS--CCCTTCEEEEEE-CHHHHHHHHHHHHHTTC---CCSSEEEEEECCTTSCHHHHHHHTTCCT
T ss_pred CeEEEeCcccCChhhhc--CCCcCceEEEcC-ChHHHHHHHHHHHhcCC---CCCceEEEecccccchHHHHHHhcCCCC
Confidence 35777999886655443 2233 455555 37788776666654322 1134566777777642 1 122
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
..--++++-.++.|+++++...+++.+.+...||+.+++.
T Consensus 165 ~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 165 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 3445667778999999999999999999999999998875
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=94.23 E-value=0.029 Score=45.60 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=79.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhc--------------------------------------C---CcEEEEeCCHHHHH
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY--------------------------------------F---NEVDLLEPVSHFLD 194 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~--------------------------------------~---~~v~~vD~S~~~l~ 194 (280)
..+..++|--||+|.+.+..+-.. . ..+.+.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 445679999999999887654310 0 03678999999999
Q ss_pred HHH---HHcCcCCCCCCCCCcceeEEEccCCCCCC-----CCCcEEEEEccchhh-cC------ChhhHHHHHHHHHHcC
Q 023562 195 AAR---ESLAPENHMAPDMHKATNFFCVPLQDFTP-----ETGRYDVIWVQWCIG-HL------TDDDFVSFFKRAKVGL 259 (280)
Q Consensus 195 ~A~---~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~fDlV~~~~~l~-~~------~~~d~~~~l~~~~r~L 259 (280)
.|+ +++...++ ...+.+...|+.+... .+..+++|++|--.. .+ ..+.+..+...+.+.+
T Consensus 129 ~A~~~r~n~~~Agl-----~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~ 203 (249)
T d1o9ga_ 129 AARRLRERLTAEGG-----ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL 203 (249)
T ss_dssp HHHHHHHHHHHTTS-----SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCC-----CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccC
Confidence 884 56666555 5678888888865431 235679999983322 22 2234678888999999
Q ss_pred CCCcEEEEEeccCC
Q 023562 260 KPGGFFVLKENIAR 273 (280)
Q Consensus 260 kpGG~lii~e~~~~ 273 (280)
.....++++.+...
T Consensus 204 p~~s~~~it~~~~k 217 (249)
T d1o9ga_ 204 PAHAVIAVTDRSRK 217 (249)
T ss_dssp CTTCEEEEEESSSC
T ss_pred CCCcEEEEeCchhh
Confidence 88888888877643
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.89 E-value=0.15 Score=37.87 Aligned_cols=93 Identities=18% Similarity=0.085 Sum_probs=58.5
Q ss_pred CCCCccEEEeecCccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCC-CCC-----CC
Q 023562 155 NNQHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFT-----PE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~-~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~-----~~ 227 (280)
..++.+||=.|||.-. .+..+++....+|.+++.++.-++.+++.-.. .....-. ++. ..
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~-------------~~~~~~~~~~~~~~~~~~ 91 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD-------------LVVNPLKEDAAKFMKEKV 91 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS-------------EEECTTTSCHHHHHHHHH
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc-------------eecccccchhhhhccccc
Confidence 4567889999988754 44444555445799999999999999885322 1111111 110 11
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.+.+|+|+.... . ..+....+.|+|||.+++.-
T Consensus 92 ~~~~~~v~~~~~-------~--~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 92 GGVHAAVVTAVS-------K--PAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp SSEEEEEESSCC-------H--HHHHHHHHHEEEEEEEEECC
T ss_pred CCCceEEeecCC-------H--HHHHHHHHHhccCCceEecc
Confidence 234555544322 2 57888999999999999863
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.87 E-value=0.19 Score=37.84 Aligned_cols=96 Identities=13% Similarity=-0.015 Sum_probs=64.3
Q ss_pred CCCCccEEEeecC--ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG--~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
..++.+||=.|+| .|..+..+++....+|++++.|++-++.+++.-.. .++...-.++. .
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~------------~vi~~~~~d~~~~v~~~t 93 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW------------QVINYREEDLVERLKEIT 93 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe------------EEEECCCCCHHHHHHHHh
Confidence 4567789888665 56788888877666899999999999999876432 11111111211 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
....+|+|+..-.- ..+......++|+|.+++.-..
T Consensus 94 ~g~g~d~v~d~~g~---------~~~~~~~~~l~~~G~~v~~g~~ 129 (179)
T d1qora2 94 GGKKVRVVYDSVGR---------DTWERSLDCLQRRGLMVSFGNS 129 (179)
T ss_dssp TTCCEEEEEECSCG---------GGHHHHHHTEEEEEEEEECCCT
T ss_pred CCCCeEEEEeCccH---------HHHHHHHHHHhcCCeeeecccc
Confidence 23579988765331 2466788899999998875443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.83 E-value=0.011 Score=45.18 Aligned_cols=99 Identities=8% Similarity=0.066 Sum_probs=63.9
Q ss_pred CCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
-++.+|+=+|+|. |..+...+......|+.+|.++..++..+..+.. ++++...+-+.+...-...|+|
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~----------~~~~~~~~~~~l~~~~~~aDiv 99 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----------RVELLYSNSAEIETAVAEADLL 99 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----------GSEEEECCHHHHHHHHHTCSEE
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc----------cceeehhhhhhHHHhhccCcEE
Confidence 3578999999997 4555656656556899999999999988887643 3444443322221111368999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
+..-.+---. -..-+-+++.+.+|||..++
T Consensus 100 I~aalipG~~--aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 100 IGAVLVPGRR--APILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp EECCCCTTSS--CCCCBCHHHHTTSCTTCEEE
T ss_pred EEeeecCCcc--cCeeecHHHHhhcCCCcEEE
Confidence 9763322111 11134567888999999865
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.74 E-value=0.055 Score=43.20 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=44.6
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcC
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~ 201 (280)
..++..++... ..++..|||.=||+|..+....+.+ .+..|+|++++.++.|++++.
T Consensus 199 ~~L~~~lI~~~-----s~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHh-----CCCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence 35556665433 3467899999999999998666554 469999999999999999864
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.69 E-value=0.044 Score=42.04 Aligned_cols=100 Identities=14% Similarity=0.049 Sum_probs=65.3
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcE
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~f 231 (280)
..++.+||=-|+ |.|.++..+++....+|+++--|++-.+.+++.-.+. .++....+.+.. ....+.|
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~---------vi~~~~~~~~~~~~~~~~gv 99 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE---------VLAREDVMAERIRPLDKQRW 99 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE---------EEECC---------CCSCCE
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce---------eeecchhHHHHHHHhhccCc
Confidence 345678998884 6668888888776667999999999999998764432 121111111111 1234689
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
|+|+-+-. . ..+....++|+|||.++..-...
T Consensus 100 D~vid~vg-------g--~~~~~~l~~l~~~Griv~~G~~~ 131 (176)
T d1xa0a2 100 AAAVDPVG-------G--RTLATVLSRMRYGGAVAVSGLTG 131 (176)
T ss_dssp EEEEECST-------T--TTHHHHHHTEEEEEEEEECSCCS
T ss_pred CEEEEcCC-------c--hhHHHHHHHhCCCceEEEeeccc
Confidence 98876432 1 35778899999999999875553
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.64 E-value=0.18 Score=37.90 Aligned_cols=95 Identities=13% Similarity=-0.105 Sum_probs=61.9
Q ss_pred CCCCccEEEeecCccHH-HHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CC
Q 023562 155 NNQHLVALDCGSGIGRI-TKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~-s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 227 (280)
..++.+||-+|||.... +..+++. +...|.++|.+++-++.+++.... .++..+-+... ..
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~------------~~i~~~~~~~~~~~~~~~ 97 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD------------HVVDARRDPVKQVMELTR 97 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS------------EEEETTSCHHHHHHHHTT
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc------------eeecCcccHHHHHHHhhC
Confidence 34667899999986544 3455543 556899999999999999876433 11221111000 12
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
...+|+|+-.-.- . ..++...+.|++||.+++.-
T Consensus 98 ~~g~d~vid~~g~------~--~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 98 GRGVNVAMDFVGS------Q--ATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp TCCEEEEEESSCC------H--HHHHHGGGGEEEEEEEEECC
T ss_pred CCCceEEEEecCc------c--hHHHHHHHHHhCCCEEEEEe
Confidence 2469988865331 1 46888899999999999863
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.36 E-value=0.021 Score=43.50 Aligned_cols=94 Identities=14% Similarity=0.014 Sum_probs=59.8
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+||=.|+ |.|..+..+++....+|++++.+++-++.+++.-.+. .+++ .+..........+|
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~---------~i~~--~~~~~~~~~~~g~D 93 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEE---------AATY--AEVPERAKAWGGLD 93 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSE---------EEEG--GGHHHHHHHTTSEE
T ss_pred CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccce---------eeeh--hhhhhhhhcccccc
Confidence 457788999884 4467788788775557999999998888888753321 1111 11100001125699
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|+-.- . ..+....+.|+|+|.+++.-
T Consensus 94 ~v~d~~-----G-----~~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 94 LVLEVR-----G-----KEVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp EEEECS-----C-----TTHHHHHTTEEEEEEEEEC-
T ss_pred cccccc-----c-----hhHHHHHHHHhcCCcEEEEe
Confidence 988632 1 12456778999999998753
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.29 E-value=0.18 Score=37.67 Aligned_cols=88 Identities=15% Similarity=0.045 Sum_probs=57.6
Q ss_pred cEEEeecCc-c-HHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 160 VALDCGSGI-G-RITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 160 ~VLDlGcG~-G-~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+|+=+|||. | .++..|.+.++. +|+++|.+++.++.+++.... .....+.... .....|+|+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~------------~~~~~~~~~~--~~~~~dlIil 68 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII------------DEGTTSIAKV--EDFSPDFVML 68 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC------------SEEESCGGGG--GGTCCSEEEE
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc------------hhhhhhhhhh--hccccccccc
Confidence 577899986 3 345556556654 799999999999999876321 1112222111 1135688876
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
+-- +.....++.++...++++..++
T Consensus 69 a~p-----~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 69 SSP-----VRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp CSC-----HHHHHHHHHHHHHHSCTTCEEE
T ss_pred cCC-----chhhhhhhhhhhcccccccccc
Confidence 544 3466789999999999887654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.18 E-value=0.2 Score=37.91 Aligned_cols=48 Identities=8% Similarity=-0.162 Sum_probs=36.6
Q ss_pred CCCCccEEEeecCccHH-HHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCc
Q 023562 155 NNQHLVALDCGSGIGRI-TKNLLIR-YFNEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~-s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
.+++.+||=+|||.... +..+++. +..+|+++|.+++-++.|++.-..
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT 76 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence 56778999999986543 4444444 445899999999999999998654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.06 E-value=0.24 Score=37.45 Aligned_cols=95 Identities=9% Similarity=-0.009 Sum_probs=65.3
Q ss_pred CCCCccEEEeecC--ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG--~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
.+++.+||=.|++ .|..+..+++....+|.++.-+++-++.+++.-... .+..+-+++. .
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~------------vi~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDA------------AFNYKTVNSLEEALKKA 94 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE------------EEETTSCSCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhh------------hcccccccHHHHHHHHh
Confidence 5678899988874 467777788776668999999999998888764331 1111111110 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
....+|+|+-+-. . +.++...++|+|+|.+++.=+
T Consensus 95 ~~~Gvd~v~D~vG-------~--~~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 95 SPDGYDCYFDNVG-------G--EFLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp CTTCEEEEEESSC-------H--HHHHHHGGGEEEEEEEEECCC
T ss_pred hcCCCceeEEecC-------c--hhhhhhhhhccCCCeEEeecc
Confidence 2356999875432 2 477889999999999998643
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.76 E-value=0.28 Score=37.00 Aligned_cols=98 Identities=12% Similarity=-0.145 Sum_probs=57.7
Q ss_pred CCCCccEEEeecCccHH-HHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC--CCC--CCCC
Q 023562 155 NNQHLVALDCGSGIGRI-TKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL--QDF--TPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~-s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~--~~~--~~~~ 228 (280)
.+++.+||=+|||.... +..+++. +...|.++|.++.-++.|++.-... .+++...|. ... ....
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~---------~i~~~~~d~~~~~~~~~~~~ 95 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE---------CLNPKDYDKPIYEVICEKTN 95 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE---------EECGGGCSSCHHHHHHHHTT
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE---------EEcCCCchhHHHHHHHHhcC
Confidence 56788999999986544 3444443 5568999999999999998864331 111111110 000 0112
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCC-CCcEEEEEe
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK-PGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~Lk-pGG~lii~e 269 (280)
+.+|+|+-.-.. ...+......++ ++|.+++.-
T Consensus 96 ~G~d~vid~~g~--------~~~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 96 GGVDYAVECAGR--------IETMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp SCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred CCCcEEEEcCCC--------chHHHHHHHHHHHhcCceEEEE
Confidence 457887754321 145555666555 568888754
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.71 E-value=0.47 Score=39.72 Aligned_cols=114 Identities=9% Similarity=0.107 Sum_probs=71.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCC-HHHHHHHHHHcCcC-------C-----CCC---CCCCcceeEEEcc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPE-------N-----HMA---PDMHKATNFFCVP 220 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S-~~~l~~A~~~~~~~-------~-----~~~---~~~~~~i~~~~~d 220 (280)
+...|+-+|||.=.....+.+... ++..+|++ |.+++.=++.+... + ... .....+...+.+|
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCccchHHHHhhccCC-CcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 345799999999888777776654 36666655 33333222221110 0 000 0002356677778
Q ss_pred CCCCC---------CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 221 LQDFT---------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 221 ~~~~~---------~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+.+.. .....--++++-.++.|+++++..++++.+.+... +|.+++-|.+.
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~ 234 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIG 234 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECC
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCC
Confidence 87642 11223457778899999999999999999998885 56677779884
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.20 E-value=0.12 Score=41.74 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=46.3
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCc
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
..++..++... ..++..|||.=||+|..+......+- +..|+|+++...+.|++++..
T Consensus 194 ~~L~~~~I~~~-----s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 194 AAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHH
T ss_pred hhHHHHHHHhh-----cCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 35666666543 34678999999999999987665554 699999999999999998864
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.07 E-value=0.47 Score=33.72 Aligned_cols=89 Identities=8% Similarity=-0.021 Sum_probs=56.3
Q ss_pred cEEEeecCccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcEE
Q 023562 160 VALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~---~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD 232 (280)
+|+=+|+ |.++..+++. ....|+.+|.+++.++.+++.+ ...++.+|..+.. ..-..+|
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~------------~~~vi~Gd~~~~~~l~~~~i~~a~ 67 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI------------DALVINGDCTKIKTLEDAGIEDAD 67 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------------SSEEEESCTTSHHHHHHTTTTTCS
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh------------hhhhccCcccchhhhhhcChhhhh
Confidence 4666665 6666666543 2236999999999999887653 2457788877642 2224678
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
.+++... +++..-++....+.+.+.-.+..
T Consensus 68 ~vv~~t~-----~d~~N~~~~~~~k~~~~~~iI~~ 97 (132)
T d1lssa_ 68 MYIAVTG-----KEEVNLMSSLLAKSYGINKTIAR 97 (132)
T ss_dssp EEEECCS-----CHHHHHHHHHHHHHTTCCCEEEE
T ss_pred hhcccCC-----cHHHHHHHHHHHHHcCCceEEEE
Confidence 8776422 23334455666677888755543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.31 Score=39.16 Aligned_cols=75 Identities=11% Similarity=0.049 Sum_probs=53.1
Q ss_pred CCccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
+++.+|=-|++.|. ++..|+++|. +|.+++.++..++.+.+.+...+. ..++.++.+|+.+..
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~-----~~~~~~~~~Dls~~~~v~~~v~~ 82 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGY-----PGTLIPYRCDLSNEEDILSMFSA 82 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-----SSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CceEEEEEccCCCHHHHHHHHHH
Confidence 35678999988873 4556666777 599999999999988776655322 346778899997642
Q ss_pred --CCCCcEEEEEcc
Q 023562 226 --PETGRYDVIWVQ 237 (280)
Q Consensus 226 --~~~~~fDlV~~~ 237 (280)
...++.|+++.+
T Consensus 83 ~~~~~g~iD~lVnn 96 (257)
T d1xg5a_ 83 IRSQHSGVDICINN 96 (257)
T ss_dssp HHHHHCCCSEEEEC
T ss_pred HHHhcCCCCEEEec
Confidence 012478988866
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.55 E-value=0.099 Score=40.22 Aligned_cols=45 Identities=11% Similarity=-0.082 Sum_probs=35.5
Q ss_pred CCccEEEeecCcc-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcC
Q 023562 157 QHLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (280)
Q Consensus 157 ~~~~VLDlGcG~G-~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~ 201 (280)
++.+|+-+|+|.- ..+...+......|+++|.++..++..+....
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~ 73 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG 73 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence 5679999999975 44555555555589999999999999988754
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.34 E-value=0.63 Score=36.93 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=50.4
Q ss_pred CCccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------CC
Q 023562 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (280)
Q Consensus 157 ~~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~ 227 (280)
+++++|=-|++.| .++..|++.+. +|.++|.++.-++...+... ++.+++.|+.+.. ..
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~d~~~v~~~~~~ 73 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP-----------GIEPVCVDLGDWEATERALGS 73 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHH
Confidence 4678899998877 45666777777 59999999998887766543 3667888887642 12
Q ss_pred CCcEEEEEcc
Q 023562 228 TGRYDVIWVQ 237 (280)
Q Consensus 228 ~~~fDlV~~~ 237 (280)
-++.|+++.+
T Consensus 74 ~g~iDilVnn 83 (244)
T d1pr9a_ 74 VGPVDLLVNN 83 (244)
T ss_dssp CCCCCEEEEC
T ss_pred hCCceEEEec
Confidence 3689999866
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=89.59 E-value=0.23 Score=37.32 Aligned_cols=98 Identities=13% Similarity=0.005 Sum_probs=63.7
Q ss_pred CCccEEEee--cCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEE
Q 023562 157 QHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlG--cG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDl 233 (280)
++.+||=-| .|.|..+..+++....+|+++.-|++-.+.+++.-.+. .++....+.+.. ....+.+|+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~---------vi~~~~~~~~~~~~~~~~gvd~ 93 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASE---------VISREDVYDGTLKALSKQQWQG 93 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSE---------EEEHHHHCSSCCCSSCCCCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccc---------eEeccchhchhhhcccCCCceE
Confidence 345688766 46667888888776667999999988888888765431 111111111111 123467999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
|+-.-. . ..+.+..+.|+|+|.+++.-...
T Consensus 94 vid~vg-------g--~~~~~~~~~l~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 94 AVDPVG-------G--KQLASLLSKIQYGGSVAVSGLTG 123 (167)
T ss_dssp EEESCC-------T--HHHHHHHTTEEEEEEEEECCCSS
T ss_pred EEecCc-------H--HHHHHHHHHhccCceEEEeeccC
Confidence 865422 2 57788999999999998865443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=89.01 E-value=0.52 Score=37.81 Aligned_cols=73 Identities=18% Similarity=0.037 Sum_probs=53.4
Q ss_pred CCccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
+++++|=.|+..| .++..|++.+. +|..++.++.-++.+.+.+... ..++.++.+|+.+..
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~-------~~~~~~~~~D~s~~~~~~~~~~~ 76 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREK-------GLNVEGSVCDLLSRTERDKLMQT 76 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc-------CCCceEEEeecCCHHHHHHHHHH
Confidence 4678999998877 35666777777 5999999999888887776553 356778889987642
Q ss_pred ---CCCCcEEEEEcc
Q 023562 226 ---PETGRYDVIWVQ 237 (280)
Q Consensus 226 ---~~~~~fDlV~~~ 237 (280)
...+..|+++.+
T Consensus 77 ~~~~~~g~idilinn 91 (258)
T d1ae1a_ 77 VAHVFDGKLNILVNN 91 (258)
T ss_dssp HHHHTTSCCCEEEEC
T ss_pred HHHHhCCCcEEEecc
Confidence 112568888865
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.03 E-value=1.3 Score=34.86 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=48.2
Q ss_pred CCccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------CC
Q 023562 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (280)
Q Consensus 157 ~~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~ 227 (280)
+++++|=-|++.|. ++..|++.+. +|.++|.+++-++...+... .+.++.+|+.+.. ..
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~ 71 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECP-----------GIEPVCVDLGDWDATEKALGG 71 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHH
Confidence 35678888887763 4556666676 59999999888877666543 3667888887642 12
Q ss_pred CCcEEEEEcc
Q 023562 228 TGRYDVIWVQ 237 (280)
Q Consensus 228 ~~~fDlV~~~ 237 (280)
-++.|+++.+
T Consensus 72 ~g~iDilVnn 81 (242)
T d1cyda_ 72 IGPVDLLVNN 81 (242)
T ss_dssp CCCCSEEEEC
T ss_pred cCCCeEEEEC
Confidence 2678998865
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.90 E-value=0.66 Score=37.34 Aligned_cols=105 Identities=20% Similarity=0.141 Sum_probs=67.0
Q ss_pred CccEE-EeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 158 HLVAL-DCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 158 ~~~VL-DlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
++||. ==|++.|. ++..|++.+...|..++.+++-++.+.+.+... ..++.++.+|+.+..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dvs~~~sv~~~~~~ 74 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE-------GLSPRFHQLDIDDLQSIRALRDF 74 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT-------TCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-------CCcEEEEEEecCCHHHHHHHHHH
Confidence 45674 44555442 344556554457999999999998888777653 346788999998753
Q ss_pred --CCCCcEEEEEccchhhcCC------hhhHH-----------HHHHHHHHcCCCCcEEEEEe
Q 023562 226 --PETGRYDVIWVQWCIGHLT------DDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 --~~~~~fDlV~~~~~l~~~~------~~d~~-----------~~l~~~~r~LkpGG~lii~e 269 (280)
...++.|+++.+-.+.+.. ++++. .+.+.+...|+++|.++..-
T Consensus 75 ~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 75 LRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp HHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 1125799999874332211 12222 34566677788999887654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=86.70 E-value=0.86 Score=32.14 Aligned_cols=87 Identities=11% Similarity=-0.042 Sum_probs=48.5
Q ss_pred EEEeecCccHHHHHHHH----hcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcEE
Q 023562 161 ALDCGSGIGRITKNLLI----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (280)
Q Consensus 161 VLDlGcG~G~~s~~l~~----~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD 232 (280)
++=+|+ |.++..+++ .+. .|+++|.+++.++.++... ...+.+|..+.. ..-...|
T Consensus 3 ~iIiG~--G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~-------------~~~~~gd~~~~~~l~~a~i~~a~ 66 (134)
T d2hmva1 3 FAVIGL--GRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYA-------------THAVIANATEENELLSLGIRNFE 66 (134)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTC-------------SEEEECCTTCTTHHHHHTGGGCS
T ss_pred EEEECC--CHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhC-------------CcceeeecccchhhhccCCcccc
Confidence 444555 566555543 344 5999999999998775332 345667776643 1113567
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+++... +++-...+-.+.+.+.|...++..
T Consensus 67 ~vi~~~~-----~~~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 67 YVIVAIG-----ANIQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp EEEECCC-----SCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEcC-----chHHhHHHHHHHHHHcCCCcEEee
Confidence 6665433 222233444444445566666553
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=86.69 E-value=1.1 Score=33.28 Aligned_cols=95 Identities=13% Similarity=-0.125 Sum_probs=57.8
Q ss_pred CCCCccEEEeecCccH-HHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------C
Q 023562 155 NNQHLVALDCGSGIGR-ITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~-~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~ 226 (280)
.+++.+||=+|||.+. .+..+++. +...|.++|.+++-++.+++.-... .+...+-.+.. .
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~-----------~i~~~~~~~~~~~~~~~~ 94 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE-----------CVNPQDYKKPIQEVLTEM 94 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE-----------EECGGGCSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCee-----------EEecCCchhHHHHHHHHH
Confidence 5678899999997554 34444444 4458999999999999998875431 11111111110 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCC-cEEEEE
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLK 268 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~ 268 (280)
..+.+|+|+-..... ..++.+...+++| |.+++.
T Consensus 95 ~~~G~D~vid~~G~~--------~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 95 SNGGVDFSFEVIGRL--------DTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp TTSCBSEEEECSCCH--------HHHHHHHHHBCTTTCEEEEC
T ss_pred hcCCCCEEEecCCch--------hHHHHHHHHHhcCCcceEEe
Confidence 225689887654421 4556666777776 566654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=86.62 E-value=0.96 Score=31.81 Aligned_cols=85 Identities=13% Similarity=0.013 Sum_probs=56.0
Q ss_pred cCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcEEEEEccchh
Q 023562 166 SGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDVIWVQWCI 240 (280)
Q Consensus 166 cG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fDlV~~~~~l 240 (280)
||.|..+..+++..-. .+..+|.++...+..+.. .+.++.+|..+-. ..-.+.+.+++...
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-------------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~- 71 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-------------GANFVHGDPTRVSDLEKANVRGARAVIVNLE- 71 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-------------TCEEEESCTTSHHHHHHTTCTTCSEEEECCS-
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-------------CccccccccCCHHHHHHhhhhcCcEEEEecc-
Confidence 6778899988876322 799999999988876542 3667888876632 22245677765322
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 241 ~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++...-++-...+.+.|...++..
T Consensus 72 ----~d~~n~~~~~~~r~~~~~~~iia~ 95 (129)
T d2fy8a1 72 ----SDSETIHCILGIRKIDESVRIIAE 95 (129)
T ss_dssp ----SHHHHHHHHHHHHHHCSSSCEEEE
T ss_pred ----chhhhHHHHHHHHHHCCCceEEEE
Confidence 233344556667778888776654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=86.61 E-value=2 Score=31.52 Aligned_cols=94 Identities=13% Similarity=-0.101 Sum_probs=59.6
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCCC------C
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF------T 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~~------~ 225 (280)
.+++.+||=.|||. |.++..+++. +...|.++|.++.-++.+++.-... ++.. +-.+. .
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~------------~i~~~~~~~~~~~~~~~ 93 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE------------CINPQDFSKPIQEVLIE 93 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE------------EECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcE------------EEeCCchhhHHHHHHHH
Confidence 56788999998873 2344445544 5568999999999999998764331 1111 10111 0
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
...+.+|+|+-.-.- . ..++.+..++++||.+++.
T Consensus 94 ~~~~g~D~vid~~G~------~--~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 94 MTDGGVDYSFECIGN------V--KVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HTTSCBSEEEECSCC------H--HHHHHHHHTBCTTTCEEEE
T ss_pred HcCCCCcEeeecCCC------H--HHHHHHHHhhcCCceeEEE
Confidence 112468988865321 2 5778889999999877664
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=86.42 E-value=0.63 Score=34.55 Aligned_cols=101 Identities=12% Similarity=0.007 Sum_probs=58.6
Q ss_pred ccEEEeecCccHH--HHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCC-CCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 159 LVALDCGSGIGRI--TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 159 ~~VLDlGcG~G~~--s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++|.=+|+|.-.. +..|++.+. +|.++|.++.-++..++.-...... .............|+.+. -..+|+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVIL 77 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---hcCCCEEE
Confidence 4678889987643 444555565 6999999999888877653211000 000000111111121110 13578887
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+.- +......+++++...|+++-.+++.
T Consensus 78 i~v-----~~~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 78 IVV-----PAIHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp ECS-----CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred EEE-----chhHHHHHHHHhhhccCCCCEEEEe
Confidence 642 2335678999999999999877654
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.33 E-value=2.3 Score=31.77 Aligned_cols=91 Identities=9% Similarity=-0.015 Sum_probs=57.4
Q ss_pred CccEEEee--cCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CCCC
Q 023562 158 HLVALDCG--SGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG 229 (280)
Q Consensus 158 ~~~VLDlG--cG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 229 (280)
+..||=.| .|.|..+..+++... ..|.++..+++........+... ..+...-+++. ..+.
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad-----------~vi~~~~~~~~~~~~~~~~~ 99 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD-----------AAVNYKTGNVAEQLREACPG 99 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS-----------EEEETTSSCHHHHHHHHCTT
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce-----------EEeeccchhHHHHHHHHhcc
Confidence 36788876 688999999998654 46777777776666554443321 11111111111 1124
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+|+|+-+-. . ..++...++|+|+|.++..
T Consensus 100 GvDvv~D~vG-------g--~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 100 GVDVYFDNVG-------G--DISNTVISQMNENSHIILC 129 (187)
T ss_dssp CEEEEEESSC-------H--HHHHHHHTTEEEEEEEEEC
T ss_pred CceEEEecCC-------c--hhHHHHhhhccccccEEEe
Confidence 6999974432 1 4678899999999999875
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=85.64 E-value=0.59 Score=40.12 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=39.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHHHcCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~---~~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
..+...++|+|+-.|..+..++... ..+|.++|+++...+..++++..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~ 260 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 260 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4566789999999999988777643 23799999999999999887654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.98 E-value=0.86 Score=36.26 Aligned_cols=69 Identities=23% Similarity=0.229 Sum_probs=47.8
Q ss_pred EEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----------CC
Q 023562 161 ALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----------PE 227 (280)
Q Consensus 161 VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 227 (280)
+|=-|++.| .++..|++++. +|.++|.+++-++...+.+... +.++.++.+|+.+.. ..
T Consensus 4 alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~-------g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQA-------GGHAVAVKVDVSDRDQVFAAVEQARKT 75 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc-------CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 355676655 24555666676 5999999999998887766543 346788889997642 11
Q ss_pred CCcEEEEEcc
Q 023562 228 TGRYDVIWVQ 237 (280)
Q Consensus 228 ~~~fDlV~~~ 237 (280)
-++.|+++.+
T Consensus 76 ~g~iDilVnn 85 (255)
T d1gega_ 76 LGGFDVIVNN 85 (255)
T ss_dssp TTCCCEEEEC
T ss_pred hCCccEEEec
Confidence 2579999865
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=84.75 E-value=1.3 Score=33.23 Aligned_cols=94 Identities=12% Similarity=0.008 Sum_probs=61.3
Q ss_pred CccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEEE
Q 023562 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (280)
Q Consensus 158 ~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fDl 233 (280)
+.+||=.|+ |.|..+..+++....+|+++.-+++..+.+++.-.+. ++.-+-.++ ......+|.
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~------------vi~~~~~~~~~~l~~~~~~~ 99 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASR------------VLPRDEFAESRPLEKQVWAG 99 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEE------------EEEGGGSSSCCSSCCCCEEE
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcccc------------ccccccHHHHHHHHhhcCCe
Confidence 346776553 4667788888776657999999999998888764331 111111111 233456888
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
|+- .+. . ..+....+.|+++|.+++.-+..
T Consensus 100 vvD-----~Vg--g--~~~~~~l~~l~~~Griv~~G~~~ 129 (177)
T d1o89a2 100 AID-----TVG--D--KVLAKVLAQMNYGGCVAACGLAG 129 (177)
T ss_dssp EEE-----SSC--H--HHHHHHHHTEEEEEEEEECCCTT
T ss_pred eEE-----Ecc--h--HHHHHHHHHhccccceEeecccC
Confidence 752 222 2 57889999999999999875554
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.70 E-value=0.73 Score=36.66 Aligned_cols=73 Identities=18% Similarity=0.118 Sum_probs=49.1
Q ss_pred CccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---------
Q 023562 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--------- 225 (280)
Q Consensus 158 ~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------- 225 (280)
++.+|=-|++.|. ++..|++.+. +|.++|.+++.++.+.+.+... +.++.++.+|+.+..
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~-------g~~~~~~~~Dvt~~~~v~~~~~~~ 81 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSF-------GYESSGYAGDVSKKEEISEVINKI 81 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTT-------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhc-------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 4566777766552 2334444455 6999999999998888777553 346788899997642
Q ss_pred -CCCCcEEEEEccc
Q 023562 226 -PETGRYDVIWVQW 238 (280)
Q Consensus 226 -~~~~~fDlV~~~~ 238 (280)
...++.|+++.+-
T Consensus 82 ~~~~g~iDilvnna 95 (251)
T d2c07a1 82 LTEHKNVDILVNNA 95 (251)
T ss_dssp HHHCSCCCEEEECC
T ss_pred HHhcCCceeeeecc
Confidence 1125789888663
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.59 E-value=1.4 Score=35.23 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=66.2
Q ss_pred CCccEEEeecCccH---HHHHHHHhcCCcEEEEeCC-HHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S-~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
+++++|=-|++.|. ++..|++++.. |.+++.+ ++.++...+.+... ..++.++.+|+.+..
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~D~~~~~~v~~~~~ 88 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTESAEEVVAAIKKN-------GSDAACVKANVGVVEDIVRMFE 88 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHT-------TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCchHHHHHHHHHHHhh-------CCceeeEeCCCCCHHHHHHHHH
Confidence 45688888888773 56667777775 9888876 55666665555443 346788888987642
Q ss_pred ---CCCCcEEEEEccchh------hcCChhhHHH-----------HHHHHHHcCCCCcEEEEEe
Q 023562 226 ---PETGRYDVIWVQWCI------GHLTDDDFVS-----------FFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ---~~~~~fDlV~~~~~l------~~~~~~d~~~-----------~l~~~~r~LkpGG~lii~e 269 (280)
...++.|+++.+-.. +..+++++.. +.+.+...|+.+|.+++.-
T Consensus 89 ~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 89 EAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred HHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 112468988866332 2333333333 3566777788887776653
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.55 E-value=1.2 Score=35.37 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=65.7
Q ss_pred CCccEEEeecCcc---HHHHHHHHhcCCcEEE-EeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDL-LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G---~~s~~l~~~~~~~v~~-vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
.++.||=.|++.| .++..|++.++. |.. ...++..++.+.+.+... +.++.++.+|+.+..
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~D~~~~~~v~~~~~ 76 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKL-------GAQGVAIQADISKPSEVVALFD 76 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHT-------TCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcCCChHHHHHHHHHHHHc-------CCCceEecCCCCCHHHHHHHHH
Confidence 4678898887766 566667777775 665 467777788777776553 346888999987642
Q ss_pred ---CCCCcEEEEEccchhhcC------ChhhH-----------HHHHHHHHHcCCCCcEEEEE
Q 023562 226 ---PETGRYDVIWVQWCIGHL------TDDDF-----------VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 226 ---~~~~~fDlV~~~~~l~~~------~~~d~-----------~~~l~~~~r~LkpGG~lii~ 268 (280)
...+..|+++.+-.+.+. +.+++ -.+.+.+...|+.+|.+++.
T Consensus 77 ~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 77 KAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp HHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 112579999977443332 22222 23445555666777766554
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=83.38 E-value=1.1 Score=35.58 Aligned_cols=70 Identities=19% Similarity=0.098 Sum_probs=48.6
Q ss_pred cEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----------C
Q 023562 160 VALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----------P 226 (280)
Q Consensus 160 ~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 226 (280)
.+|=-|++.|. ++..|++.++ +|.++|.+++.++.+.+.+... +.++.++.+|+.+.. .
T Consensus 4 ValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~-------g~~~~~~~~Dvs~~~~v~~~~~~~~~ 75 (257)
T d2rhca1 4 VALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREA-------GVEADGRTCDVRSVPEIEALVAAVVE 75 (257)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc-------CCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 34666766552 4555666677 5999999999998887776543 346888999997652 1
Q ss_pred CCCcEEEEEcc
Q 023562 227 ETGRYDVIWVQ 237 (280)
Q Consensus 227 ~~~~fDlV~~~ 237 (280)
.-++.|+++.+
T Consensus 76 ~~g~iDilVnn 86 (257)
T d2rhca1 76 RYGPVDVLVNN 86 (257)
T ss_dssp HTCSCSEEEEC
T ss_pred HhCCCCEEEec
Confidence 12578988865
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=81.55 E-value=2.1 Score=34.12 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=52.0
Q ss_pred CCccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
+++.+|=-|++.|. ++..|++.+. +|.++|.+++-++.+.+.+.. ...+.++.+|+.+..
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~--------~~~~~~~~~Dv~~~~~v~~~~~~ 75 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGS--------PDVISFVHCDVTKDEDVRNLVDT 75 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC--------TTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC--------CCceEEEEccCCCHHHHHHHHHH
Confidence 45678888887773 4555666676 599999999999988877765 245778888987642
Q ss_pred --CCCCcEEEEEccc
Q 023562 226 --PETGRYDVIWVQW 238 (280)
Q Consensus 226 --~~~~~fDlV~~~~ 238 (280)
...++.|+++.+-
T Consensus 76 ~~~~~g~iD~lVnnA 90 (268)
T d2bgka1 76 TIAKHGKLDIMFGNV 90 (268)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCcceecccc
Confidence 0114789998663
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.92 E-value=0.2 Score=40.25 Aligned_cols=53 Identities=15% Similarity=0.060 Sum_probs=33.9
Q ss_pred EEEccCCCC--CCCCCcEEEEEccch--hh------cCCh-hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 216 FFCVPLQDF--TPETGRYDVIWVQWC--IG------HLTD-DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 216 ~~~~d~~~~--~~~~~~fDlV~~~~~--l~------~~~~-~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+.+|..+. .++++++|+|+..-- +. +..- +.+..++.++.|+|||||.+++.
T Consensus 7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~ 70 (279)
T d1eg2a_ 7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 70 (279)
T ss_dssp EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence 455554332 245689999997622 11 0010 23467889999999999998885
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=80.05 E-value=0.58 Score=35.48 Aligned_cols=97 Identities=8% Similarity=-0.039 Sum_probs=51.8
Q ss_pred CCCCccEEEeecC---ccHHHHHHHHhcCCcEEEEe----CCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--
Q 023562 155 NNQHLVALDCGSG---IGRITKNLLIRYFNEVDLLE----PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG---~G~~s~~l~~~~~~~v~~vD----~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-- 225 (280)
..++.+||=+.+| .|..+..+++....+|.++- -+++.++.+++.-.. ..++....+..++.
T Consensus 26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad---------~vi~~~~~~~~~~~~~ 96 (189)
T d1gu7a2 26 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---------QVITEDQNNSREFGPT 96 (189)
T ss_dssp CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---------EEEEHHHHHCGGGHHH
T ss_pred CCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc---------EEEeccccchhHHHHH
Confidence 4566778877333 46677777766444576663 223344444443222 11111111222211
Q ss_pred ------CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 ------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ------~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
...+.+|+|+-+ +. . ..+....+.|+|+|.++..=
T Consensus 97 v~~~~~~~g~~vdvv~D~-----vg--~--~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 97 IKEWIKQSGGEAKLALNC-----VG--G--KSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp HHHHHHHHTCCEEEEEES-----SC--H--HHHHHHHHTSCTTCEEEECC
T ss_pred HHHHHhhccCCceEEEEC-----CC--c--chhhhhhhhhcCCcEEEEEC
Confidence 012468998743 22 1 35567789999999998753
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=80.01 E-value=2.1 Score=34.01 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=52.5
Q ss_pred CCccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
+++.+|=-|++.|. ++..|++.+. +|..+|.+++.++.+.+.+... +.++.++.+|+.+..
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~-------g~~~~~~~~Dv~~~~~v~~~~~~ 75 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREK-------GVEARSYVCDVTSEEAVIGTVDS 75 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTT-------TSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc-------CCcEEEEEccCCCHHHHHHHHHH
Confidence 35678888877663 5666677777 5999999999999888777653 346788889987642
Q ss_pred --CCCCcEEEEEcc
Q 023562 226 --PETGRYDVIWVQ 237 (280)
Q Consensus 226 --~~~~~fDlV~~~ 237 (280)
...+..|+++.+
T Consensus 76 ~~~~~g~iDilVnn 89 (260)
T d1zema1 76 VVRDFGKIDFLFNN 89 (260)
T ss_dssp HHHHHSCCCEEEEC
T ss_pred HHHHhCCCCeehhh
Confidence 011478988865
|