Citrus Sinensis ID: 023575

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
MTSWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASLPSIC
cccccccccEEEEEEEEccccEEcHHHHHHHHccccccEEEEccccEEccccccccHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccHHHHHHHHHHHcccccEEEEcHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccEEEEEEcccccEEEEEccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccHHHHHHHHHHHHHHHHcccccccc
cccccccccEEEEEEEEcccccccHHHHHHHcccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccHHHcEEEEEccHHHHccHHHHHHHHHHHHcccccccEEEEccccccccHHHHHHHHHHHHHcccccccEEEEEEccHEEEccccccccccHHHHHHHEcccccEEEcccccEcEHHccHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHccEEEEcccHHHHHHHHHHHHHHHHHHccccccccc
mtswhpknvgilaldiyfpptcVLQEALevhdgvskgkytvglgQDCMAFCSEVEDVISMSLTVVTSLLEkykidptqigrlevgsetvidKSKSIKTFLMQIFEKYgntdiegvdstnacyggtaALFNCVNWvesaswdgryglvvctdsavyaegparptgGAAAVAMLigpdapiafesklrgshmshaydfykpnlaseypvvdgklsqTCYLMALDSCYKYFCQKFEKLegrqfsmldvdyfvfhspynkLVQKSFARLFFNDFlrnaslpsic
MTSWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEkykidptqigrlevgsetvidkskSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASLPSIC
MTSWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASLPSIC
******KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGP******************YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRN*******
*****PK**GILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNA******
MTSWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASLPSIC
****HPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNAS*****
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MTSWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASLPSIC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query280 2.2.26 [Sep-21-2011]
P54873 461 Hydroxymethylglutaryl-CoA yes no 0.960 0.583 0.866 1e-143
P54872 482 Hydroxymethylglutaryl-CoA yes no 0.957 0.556 0.619 1e-102
Q5R7Z9 520 Hydroxymethylglutaryl-CoA yes no 0.964 0.519 0.618 3e-99
Q01581 520 Hydroxymethylglutaryl-CoA yes no 0.964 0.519 0.618 4e-99
P23228 522 Hydroxymethylglutaryl-CoA yes no 0.957 0.513 0.633 1e-98
Q8JZK9 520 Hydroxymethylglutaryl-CoA yes no 0.957 0.515 0.622 3e-98
P17425 520 Hydroxymethylglutaryl-CoA yes no 0.957 0.515 0.619 7e-98
P54868 508 Hydroxymethylglutaryl-CoA no no 0.971 0.535 0.611 1e-97
P54869 508 Hydroxymethylglutaryl-CoA no no 0.971 0.535 0.607 6e-97
Q2KIE6 508 Hydroxymethylglutaryl-CoA no no 0.957 0.527 0.609 7e-97
>sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=1 SV=2 Back     alignment and function desciption
 Score =  507 bits (1305), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 233/269 (86%), Positives = 249/269 (92%)

Query: 7   KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
           KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS   VT
Sbjct: 3   KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 62

Query: 67  SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
           SL EKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTA
Sbjct: 63  SLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 122

Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
           AL NCVNWVES SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+AMLIGPDAPI FESKLR
Sbjct: 123 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 182

Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
            SHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEK+EG++FS+ D D
Sbjct: 183 ASHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSINDAD 242

Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNAS 275
           Y VFHSPYNKLVQKSFARL +NDFLRNAS
Sbjct: 243 YIVFHSPYNKLVQKSFARLLYNDFLRNAS 271
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Devoided of acetoacetyl-CoA thiolase (AACT) activity. Required for the development of both tapetosomes and elaioplasts in tapetal cells and for pollen viability during pollen tube elongation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 1EC: 0
>sp|P54872|HMCSA_DICDI Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=1 SV=2 Back     alignment and function description
>sp|Q5R7Z9|HMCS1_PONAB Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q01581|HMCS1_HUMAN Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2 Back     alignment and function description
>sp|P23228|HMCS1_CHICK Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Gallus gallus GN=HMGCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8JZK9|HMCS1_MOUSE Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Mus musculus GN=Hmgcs1 PE=1 SV=1 Back     alignment and function description
>sp|P17425|HMCS1_RAT Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Rattus norvegicus GN=Hmgcs1 PE=1 SV=1 Back     alignment and function description
>sp|P54868|HMCS2_HUMAN Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens GN=HMGCS2 PE=1 SV=1 Back     alignment and function description
>sp|P54869|HMCS2_MOUSE Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Mus musculus GN=Hmgcs2 PE=1 SV=2 Back     alignment and function description
>sp|Q2KIE6|HMCS2_BOVIN Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Bos taurus GN=HMGCS2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
357500885 459 Hydroxymethylglutaryl-CoA synthase [Medi 0.985 0.601 0.884 1e-147
356529306 457 PREDICTED: hydroxymethylglutaryl-CoA syn 0.985 0.603 0.887 1e-146
356497206 471 PREDICTED: hydroxymethylglutaryl-CoA syn 0.960 0.571 0.899 1e-146
42795470 464 HMG-CoA synthase 2 [Hevea brasiliensis] 0.960 0.579 0.903 1e-145
255537251 464 hydroxymethylglutaryl-CoA synthase, puta 0.960 0.579 0.899 1e-145
225426749 464 PREDICTED: hydroxymethylglutaryl-CoA syn 0.960 0.579 0.910 1e-145
164604966 464 hydroxymethylglutaryl-CoA synthase [Heve 0.960 0.579 0.899 1e-145
298370745 468 3-hydroxy-3-methylglutaryl coenzyme A sy 0.960 0.574 0.899 1e-145
16417956 464 hydroxymethylglutaryl coenzyme A synthas 0.960 0.579 0.895 1e-145
343466153 465 hydroxymethylglutaryl-CoA synthase [Sira 0.960 0.578 0.903 1e-145
>gi|357500885|ref|XP_003620731.1| Hydroxymethylglutaryl-CoA synthase [Medicago truncatula] gi|355495746|gb|AES76949.1| Hydroxymethylglutaryl-CoA synthase [Medicago truncatula] Back     alignment and taxonomy information
 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 244/276 (88%), Positives = 259/276 (93%)

Query: 1   MTSWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISM 60
           M S HP NVGILA+DIYFPPTCV QEALE HDGVSKGKYT+GLGQDCMAFC+EVED+ISM
Sbjct: 1   MASSHPNNVGILAIDIYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTEVEDIISM 60

Query: 61  SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNA 120
           S+TVV+SLLEKY IDP +IGRLEVGSET+IDKSKSIKTFLMQIFE  GNTDIEGVDSTNA
Sbjct: 61  SMTVVSSLLEKYNIDPKKIGRLEVGSETMIDKSKSIKTFLMQIFEDSGNTDIEGVDSTNA 120

Query: 121 CYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIA 180
           CYGGTAALFNCVNWVES+SWDGRYGLVVCTDSAVYAEGPARPTGGAAA+AML+GPDAPIA
Sbjct: 121 CYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPIA 180

Query: 181 FESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQF 240
           FESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCY+ FC+KFEK EG+ F
Sbjct: 181 FESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYRVFCEKFEKSEGKHF 240

Query: 241 SMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASL 276
           SM D DYFVFHSPYNKLVQKSF RL+FNDFLRN S 
Sbjct: 241 SMADSDYFVFHSPYNKLVQKSFGRLYFNDFLRNPSF 276

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356529306|ref|XP_003533236.1| PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] Back     alignment and taxonomy information
>gi|356497206|ref|XP_003517453.1| PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] Back     alignment and taxonomy information
>gi|42795470|gb|AAS46245.1| HMG-CoA synthase 2 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|255537251|ref|XP_002509692.1| hydroxymethylglutaryl-CoA synthase, putative [Ricinus communis] gi|223549591|gb|EEF51079.1| hydroxymethylglutaryl-CoA synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225426749|ref|XP_002282434.1| PREDICTED: hydroxymethylglutaryl-CoA synthase [Vitis vinifera] gi|297742614|emb|CBI34763.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|164604966|dbj|BAF98279.1| hydroxymethylglutaryl-CoA synthase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|298370745|gb|ADI80347.1| 3-hydroxy-3-methylglutaryl coenzyme A synthase [Panax ginseng] Back     alignment and taxonomy information
>gi|16417956|gb|AAL18930.1|AF429389_1 hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|343466153|gb|AEM42970.1| hydroxymethylglutaryl-CoA synthase [Siraitia grosvenorii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
TAIR|locus:2137015 461 HMGS "HYDROXYMETHYLGLUTARYL-CO 0.960 0.583 0.866 1.2e-129
DICTYBASE|DDB_G0288461 482 hgsA "hydroxymethylglutaryl-Co 0.957 0.556 0.619 2.4e-92
UNIPROTKB|F1N9T0 522 HMGCS1 "Hydroxymethylglutaryl- 0.953 0.511 0.641 1.7e-91
UNIPROTKB|F1NTT0 525 HMGCS1 "Hydroxymethylglutaryl- 0.953 0.508 0.641 1.7e-91
UNIPROTKB|Q01581 520 HMGCS1 "Hydroxymethylglutaryl- 0.960 0.517 0.621 1.2e-90
ZFIN|ZDB-GENE-040426-1042 519 hmgcs1 "3-hydroxy-3-methylglut 0.964 0.520 0.643 1.5e-90
UNIPROTKB|P23228 522 HMGCS1 "Hydroxymethylglutaryl- 0.953 0.511 0.637 2.5e-90
UNIPROTKB|F6RJG0 565 HMGCS1 "Uncharacterized protei 0.960 0.476 0.625 5.1e-90
MGI|MGI:107592 520 Hmgcs1 "3-hydroxy-3-methylglut 0.960 0.517 0.621 6.5e-90
UNIPROTKB|E2QX73 520 HMGCS1 "Uncharacterized protei 0.960 0.517 0.618 1.1e-89
TAIR|locus:2137015 HMGS "HYDROXYMETHYLGLUTARYL-COA SYNTHASE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
 Identities = 233/269 (86%), Positives = 249/269 (92%)

Query:     7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
             KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS   VT
Sbjct:     3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 62

Query:    67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
             SL EKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTA
Sbjct:    63 SLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 122

Query:   127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
             AL NCVNWVES SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+AMLIGPDAPI FESKLR
Sbjct:   123 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 182

Query:   187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
              SHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEK+EG++FS+ D D
Sbjct:   183 ASHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSINDAD 242

Query:   247 YFVFHSPYNKLVQKSFARLFFNDFLRNAS 275
             Y VFHSPYNKLVQKSFARL +NDFLRNAS
Sbjct:   243 YIVFHSPYNKLVQKSFARLLYNDFLRNAS 271
GO:0003824 "catalytic activity" evidence=IEA
GO:0004421 "hydroxymethylglutaryl-CoA synthase activity" evidence=IEA;IGI;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA
GO:0008299 "isoprenoid biosynthetic process" evidence=IEA
GO:0019287 "isopentenyl diphosphate biosynthetic process, mevalonate pathway" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0003985 "acetyl-CoA C-acetyltransferase activity" evidence=IGI
DICTYBASE|DDB_G0288461 hgsA "hydroxymethylglutaryl-CoA synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1N9T0 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NTT0 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1042 hmgcs1 "3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P23228 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F6RJG0 HMGCS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:107592 Hmgcs1 "3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2QX73 HMGCS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P54873HMCS_ARATH2, ., 3, ., 3, ., 1, 00.86610.96070.5835yesno
P54874HMCS_SCHPO2, ., 3, ., 3, ., 1, 00.53400.98210.6152yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.30.963
3rd Layer2.3.3.100.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
PLN02577 459 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synt 0.0
TIGR01833 457 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutar 0.0
pfam01154171 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-c 6e-95
COG3425 377 COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synt 2e-79
cd00827324 cd00827, init_cond_enzymes, "initiating" condensin 4e-68
pfam08540 282 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-c 6e-58
TIGR01835 379 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylgluta 3e-37
PRK04262347 PRK04262, PRK04262, hypothetical protein; Provisio 1e-12
TIGR00748345 TIGR00748, HMG_CoA_syn_Arc, hydroxymethylglutaryl- 3e-12
>gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase Back     alignment and domain information 
 Score =  597 bits (1540), Expect = 0.0
 Identities = 233/270 (86%), Positives = 252/270 (93%)

Query: 6   PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
           PKNVGILA+++YFPPTCV QEALE HDGVSKGKYT+GLGQDCMAFC++VEDVISMSLTVV
Sbjct: 2   PKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVV 61

Query: 66  TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
            SLLEKY IDP QIGRLEVGSETVIDKSKSIKTFLMQ+FE+ GNTDIEGVDSTNACYGGT
Sbjct: 62  KSLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGGT 121

Query: 126 AALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKL 185
           AAL NCVNWVES+SWDGRYGLVV  DSAVYAEGPARPTGGA AVAML+GP+API FESK 
Sbjct: 122 AALLNCVNWVESSSWDGRYGLVVAADSAVYAEGPARPTGGAGAVAMLVGPNAPIVFESKY 181

Query: 186 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 245
           RGSHM+H YDFYKP+LASEYPVVDGKLSQTCYLMALDSCYK FC+K+EKLEG+QFS+ D 
Sbjct: 182 RGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEKYEKLEGKQFSISDA 241

Query: 246 DYFVFHSPYNKLVQKSFARLFFNDFLRNAS 275
           DYFVFH+PYNKLVQKSFARL +NDF RNAS
Sbjct: 242 DYFVFHAPYNKLVQKSFARLVYNDFQRNAS 271

Length = 459
>gnl|CDD|233591 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade Back     alignment and domain information
>gnl|CDD|110176 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase N terminal Back     alignment and domain information
>gnl|CDD|225959 COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|238423 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes Back     alignment and domain information
>gnl|CDD|219892 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A synthase C terminal Back     alignment and domain information
>gnl|CDD|213655 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade Back     alignment and domain information
>gnl|CDD|235266 PRK04262, PRK04262, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|129831 TIGR00748, HMG_CoA_syn_Arc, hydroxymethylglutaryl-CoA synthase, putative Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 280
COG0332323 FabH 3-oxoacyl-[acyl-carrier-protein] 100.0
PLN02577 459 hydroxymethylglutaryl-CoA synthase 100.0
PRK12880353 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
TIGR01833 454 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth 100.0
PRK05963326 3-oxoacyl-(acyl carrier protein) synthase II; Revi 100.0
PRK07204329 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
TIGR01835 379 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt 100.0
COG3425 377 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi 100.0
PRK04262347 hypothetical protein; Provisional 100.0
TIGR00748345 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase 100.0
CHL00203326 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr 100.0
PLN02326379 3-oxoacyl-[acyl-carrier-protein] synthase III 100.0
PRK12879325 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
PRK06840339 hypothetical protein; Validated 100.0
PRK09258338 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
cd00830320 KAS_III Ketoacyl-acyl carrier protein synthase III 100.0
PLN03169391 chalcone synthase family protein; Provisional 100.0
PRK06816378 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
TIGR00747318 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III 100.0
cd00831361 CHS_like Chalcone and stilbene synthases; plant-sp 100.0
PLN03171399 chalcone synthase-like protein; Provisional 100.0
PRK09352319 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
PLN03168389 chalcone synthase; Provisional 100.0
PRK07515372 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
PLN03172393 chalcone synthase family protein; Provisional 100.0
PLN03173391 chalcone synthase; Provisional 100.0
PLN03170401 chalcone synthase; Provisional 100.0
cd00827324 init_cond_enzymes "initiating" condensing enzymes 100.0
PLN02377502 3-ketoacyl-CoA synthase 100.0
PLN02932478 3-ketoacyl-CoA synthase 100.0
PLN02854521 3-ketoacyl-CoA synthase 100.0
KOG1393 462 consensus Hydroxymethylglutaryl-CoA synthase [Lipi 100.0
COG3424356 BcsA Predicted naringenin-chalcone synthase [Secon 100.0
PLN02192 511 3-ketoacyl-CoA synthase 100.0
PF01154174 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s 99.98
PLN00415 466 3-ketoacyl-CoA synthase 99.97
PF00195226 Chal_sti_synt_N: Chalcone and stilbene synthases, 99.94
cd00327254 cond_enzymes Condensing enzymes; Family of enzymes 99.91
PF08392290 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase- 99.87
cd00825332 decarbox_cond_enzymes decarboxylating condensing e 99.87
TIGR02845327 spore_V_AD stage V sporulation protein AD. Bacillu 99.82
PRK06147348 3-oxoacyl-(acyl carrier protein) synthase; Validat 99.78
PRK08304337 stage V sporulation protein AD; Validated 99.75
cd00834406 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) 99.62
PF0854580 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP) 99.57
cd00829 375 SCP-x_thiolase Thiolase domain associated with ste 99.55
PRK06064 389 acetyl-CoA acetyltransferase; Provisional 99.53
smart00825424 PKS_KS Beta-ketoacyl synthase. The structure of be 99.52
PRK12404334 stage V sporulation protein AD; Provisional 99.52
PRK06501425 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.49
PRK06158 384 thiolase; Provisional 99.47
cd00751 386 thiolase Thiolase are ubiquitous enzymes that cata 99.45
TIGR01930 386 AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi 99.42
cd00833421 PKS polyketide synthases (PKSs) polymerize simple 99.39
PRK05656 393 acetyl-CoA acetyltransferase; Provisional 99.38
PRK12578 385 acetyl-CoA acetyltransferase; Provisional 99.37
PRK09051 394 beta-ketothiolase; Provisional 99.37
PRK08313 386 acetyl-CoA acetyltransferase; Provisional 99.36
PRK09052 399 acetyl-CoA acetyltransferase; Provisional 99.36
PRK06205 404 acetyl-CoA acetyltransferase; Provisional 99.33
PRK07108 392 acetyl-CoA acetyltransferase; Provisional 99.33
PRK08235 393 acetyl-CoA acetyltransferase; Provisional 99.33
PRK08242 402 acetyl-CoA acetyltransferase; Validated 99.31
PRK06289 403 acetyl-CoA acetyltransferase; Provisional 99.29
cd00826 393 nondecarbox_cond_enzymes nondecarboxylating conden 99.29
PRK06059 399 lipid-transfer protein; Provisional 99.28
cd00828407 elong_cond_enzymes "elongating" condensing enzymes 99.27
TIGR03150407 fabF beta-ketoacyl-acyl-carrier-protein synthase I 99.27
PRK05790 393 putative acyltransferase; Provisional 99.25
PRK06954 397 acetyl-CoA acetyltransferase; Provisional 99.24
PRK08170 426 acetyl-CoA acetyltransferase; Provisional 99.24
PRK07103410 polyketide beta-ketoacyl:acyl carrier protein synt 99.23
PRK06065 392 acetyl-CoA acetyltransferase; Provisional 99.22
PRK07516 389 acetyl-CoA acetyltransferase; Provisional 99.2
PRK06445 394 acetyl-CoA acetyltransferase; Provisional 99.19
PRK06333424 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.17
PRK07314411 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.14
PF00108264 Thiolase_N: Thiolase, N-terminal domain; InterPro: 99.13
PLN02287 452 3-ketoacyl-CoA thiolase 99.13
PRK05952381 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.09
PRK08439406 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.07
PRK07661 391 acetyl-CoA acetyltransferase; Provisional 99.07
PRK08256 391 lipid-transfer protein; Provisional 99.04
PLN02836437 3-oxoacyl-[acyl-carrier-protein] synthase 99.03
PRK06066 385 acetyl-CoA acetyltransferase; Provisional 99.03
PRK08722414 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.02
PRK07851 406 acetyl-CoA acetyltransferase; Provisional 99.02
PRK09185392 3-oxoacyl-(acyl carrier protein) synthase I; Revie 99.02
PTZ00050421 3-oxoacyl-acyl carrier protein synthase; Provision 99.0
PRK09116405 3-oxoacyl-(acyl carrier protein) synthase II; Revi 98.98
PLN02787540 3-oxoacyl-[acyl-carrier-protein] synthase II 98.97
PTZ00455 438 3-ketoacyl-CoA thiolase; Provisional 98.95
PRK06157 398 acetyl-CoA acetyltransferase; Validated 98.94
PRK14691342 3-oxoacyl-(acyl carrier protein) synthase II; Prov 98.93
PRK08131 401 acetyl-CoA acetyltransferase; Provisional 98.9
PRK06365 430 acetyl-CoA acetyltransferase; Provisional 98.9
PRK08963 428 fadI 3-ketoacyl-CoA thiolase; Reviewed 98.89
cd00832399 CLF Chain-length factor (CLF) is a factor required 98.89
PRK07850 387 acetyl-CoA acetyltransferase; Provisional 98.87
PF00109254 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal 98.87
TIGR02446 430 FadI fatty oxidation complex, beta subunit FadI. T 98.86
PRK06633 392 acetyl-CoA acetyltransferase; Provisional 98.84
PRK06366 388 acetyl-CoA acetyltransferase; Provisional 98.84
PLN02644 394 acetyl-CoA C-acetyltransferase 98.83
PRK09050 401 beta-ketoadipyl CoA thiolase; Validated 98.83
PRK06504 390 acetyl-CoA acetyltransferase; Provisional 98.83
PRK06519398 3-oxoacyl-(acyl carrier protein) synthase II; Revi 98.82
PRK13359 400 beta-ketoadipyl CoA thiolase; Provisional 98.8
TIGR02430 400 pcaF beta-ketoadipyl CoA thiolase. Members of this 98.77
PRK07910418 3-oxoacyl-(acyl carrier protein) synthase II; Revi 98.77
PF08540 282 HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A s 98.74
PRK07801 382 acetyl-CoA acetyltransferase; Provisional 98.72
PRK08947 387 fadA 3-ketoacyl-CoA thiolase; Reviewed 98.71
TIGR02445 385 fadA fatty oxidation complex, beta subunit FadA. T 98.68
PRK08142 388 acetyl-CoA acetyltransferase; Provisional 98.68
PRK09268 427 acetyl-CoA acetyltransferase; Provisional 98.68
PF0854190 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC 98.66
PRK07967406 3-oxoacyl-(acyl carrier protein) synthase I; Revie 98.66
PF07451329 SpoVAD: Stage V sporulation protein AD (SpoVAD); I 98.65
PRK08257 498 acetyl-CoA acetyltransferase; Validated 98.56
COG0304412 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li 98.54
PRK07855 386 lipid-transfer protein; Provisional 98.52
PRK06025 417 acetyl-CoA acetyltransferase; Provisional 98.43
COG3321 1061 Polyketide synthase modules and related proteins [ 98.43
TIGR02813 2582 omega_3_PfaA polyketide-type polyunsaturated fatty 98.39
PRK06690 361 acetyl-CoA acetyltransferase; Provisional 98.3
PRK07937 352 lipid-transfer protein; Provisional 98.26
PF02797151 Chal_sti_synt_C: Chalcone and stilbene synthases, 98.21
KOG1406 408 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44 98.2
COG0183 392 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis 97.65
KOG1394440 consensus 3-oxoacyl-(acyl-carrier-protein) synthas 97.55
KOG1390 396 consensus Acetyl-CoA acetyltransferase [Lipid tran 97.0
KOG1391 396 consensus Acetyl-CoA acetyltransferase [Lipid tran 96.42
PF13723218 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina 95.87
KOG1392 465 consensus Acetyl-CoA acetyltransferase [Lipid tran 95.48
KOG1389 435 consensus 3-oxoacyl CoA thiolase [Lipid transport 95.27
PRK06025417 acetyl-CoA acetyltransferase; Provisional 95.22
PRK06690361 acetyl-CoA acetyltransferase; Provisional 95.09
PF0854190 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC 94.25
PRK06147348 3-oxoacyl-(acyl carrier protein) synthase; Validat 94.24
PRK06816378 3-oxoacyl-(acyl carrier protein) synthase III; Rev 93.47
PRK12578385 acetyl-CoA acetyltransferase; Provisional 92.9
TIGR00748345 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase 92.84
PRK05656393 acetyl-CoA acetyltransferase; Provisional 92.13
cd00751386 thiolase Thiolase are ubiquitous enzymes that cata 91.74
PRK07516389 acetyl-CoA acetyltransferase; Provisional 91.46
PRK08256391 lipid-transfer protein; Provisional 91.39
PF02801119 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-termina 91.24
PRK04262347 hypothetical protein; Provisional 91.03
PRK05790393 putative acyltransferase; Provisional 90.51
PRK09051394 beta-ketothiolase; Provisional 90.29
PRK09258338 3-oxoacyl-(acyl carrier protein) synthase III; Rev 90.06
cd00825332 decarbox_cond_enzymes decarboxylating condensing e 90.05
PLN02287452 3-ketoacyl-CoA thiolase 89.99
cd00327254 cond_enzymes Condensing enzymes; Family of enzymes 89.94
PRK08257498 acetyl-CoA acetyltransferase; Validated 89.8
PRK08242402 acetyl-CoA acetyltransferase; Validated 89.78
PRK08947387 fadA 3-ketoacyl-CoA thiolase; Reviewed 89.74
PRK07661391 acetyl-CoA acetyltransferase; Provisional 89.71
PRK06954397 acetyl-CoA acetyltransferase; Provisional 89.58
PRK07515372 3-oxoacyl-(acyl carrier protein) synthase III; Rev 89.43
TIGR02445385 fadA fatty oxidation complex, beta subunit FadA. T 88.99
PRK06504390 acetyl-CoA acetyltransferase; Provisional 88.76
CHL00203326 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr 88.62
PRK06840339 hypothetical protein; Validated 87.94
PRK12879325 3-oxoacyl-(acyl carrier protein) synthase III; Rev 87.76
cd00826393 nondecarbox_cond_enzymes nondecarboxylating conden 87.73
PRK08235393 acetyl-CoA acetyltransferase; Provisional 87.69
PLN02326379 3-oxoacyl-[acyl-carrier-protein] synthase III 87.68
PRK06445394 acetyl-CoA acetyltransferase; Provisional 87.66
PRK06205404 acetyl-CoA acetyltransferase; Provisional 87.56
PRK06366388 acetyl-CoA acetyltransferase; Provisional 86.61
TIGR01930386 AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi 85.58
COG0304412 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li 85.52
PRK07937352 lipid-transfer protein; Provisional 85.03
PRK09050401 beta-ketoadipyl CoA thiolase; Validated 84.09
PRK09052399 acetyl-CoA acetyltransferase; Provisional 84.04
PRK07204329 3-oxoacyl-(acyl carrier protein) synthase III; Rev 83.82
KOG1202 2376 consensus Animal-type fatty acid synthase and rela 83.66
TIGR00747318 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III 82.96
cd00831361 CHS_like Chalcone and stilbene synthases; plant-sp 82.45
PRK05963326 3-oxoacyl-(acyl carrier protein) synthase II; Revi 82.24
PRK07850387 acetyl-CoA acetyltransferase; Provisional 81.86
PLN02644394 acetyl-CoA C-acetyltransferase 80.86
PRK06158384 thiolase; Provisional 80.85
cd00828407 elong_cond_enzymes "elongating" condensing enzymes 80.41
PTZ00455438 3-ketoacyl-CoA thiolase; Provisional 80.24
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] Back     alignment and domain information 
Probab=100.00  E-value=1e-57  Score=404.59  Aligned_cols=263  Identities=21%  Similarity=0.206  Sum_probs=230.8

Q ss_pred             ceeEEeEEEEecCCccccHHHHHHhhCCCCCeeeeccCceeeecCCCCCCHHHHHHHHHHHHHHHcCCCCCCccEEEEec
Q 023575            7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGS   86 (280)
Q Consensus         7 ~~~~I~~ig~~lP~~~v~~~~~~~~~g~~~~~~~~~ig~r~~~~~~~~e~~~~la~~Aa~~aL~~agi~~~~Id~li~~t   86 (280)
                      ++++|.++|.|+|++.++|+++++..+++++||.+.+|.|+||++.++|+.++|+++|+++||+++|++|+|||+||++|
T Consensus         2 ~~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rtGir~R~~a~~~e~~s~la~~Aa~~AL~~Agi~~~dIDlII~aT   81 (323)
T COG0332           2 MNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIAADDETTSDLAVEAARKALEDAGISPDDIDLIIVAT   81 (323)
T ss_pred             CcceEEEEEeecCCcccChHHHHhccCCCcceeeeecCCceeeecCCCccHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence            57899999999999999999999999999999998888888899999999999999999999999999999999999999


Q ss_pred             ccCCCCCCchHHHHHHHHHhcCCCCeeeeeccccCchHHHHHHHHHHHHHhcCCCCCeEEEEEecccc----ccCCCCCc
Q 023575           87 ETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAV----YAEGPARP  162 (280)
Q Consensus        87 ~t~~~~~p~~a~~l~~~l~~~g~~~~~~~dv~~~C~g~~~aL~~A~~~l~~g~~~~~~vLvv~~e~~s----~~~~~~~~  162 (280)
                      +||++..|++|+.||..|+   ++++.+||++.+|+||++||.+|..++++|.+  ++||||++|.+|    +.++.+..
T Consensus        82 ~tpd~~~Ps~A~~vq~~LG---~~~~~afDl~aaCsgf~yaL~~A~~~i~sG~~--k~vLVVg~e~~S~~ld~~dR~t~v  156 (323)
T COG0332          82 STPDHLFPSTACLVQARLG---LGGAPAFDLQAACSGFLYALSVADGLIRSGGY--KNVLVVGAETLSRILDWTDRDTCV  156 (323)
T ss_pred             CCcccCCChHHHHHHHHhC---CCCcceeechhhhHHHHHHHHHHHHHHHcCCC--CEEEEEehhHhhccCCHhhccceE
Confidence            9999999999999887775   46689999999999999999999999999977  999999999997    34677899


Q ss_pred             ccCCceEEEEECCCC-CceeeccccccccccccccccCCCCCcc---------cccCCcchHHHHHHHHHHHHHHHHHHH
Q 023575          163 TGGAAAVAMLIGPDA-PIAFESKLRGSHMSHAYDFYKPNLASEY---------PVVDGKLSQTCYLMALDSCYKYFCQKF  232 (280)
Q Consensus       163 ~fGDgAaA~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~  232 (280)
                      +|||||+|+||++.+ ..+++...+++++......+.+.++...         ..++|   .++|.++++.+.+.+.   
T Consensus       157 lFgDGAgAvvl~~~~~~~~i~~~~l~sdg~~~~~l~~~~~~~~~~~~~~~~~~~~m~G---r~vfk~av~~~~~~~~---  230 (323)
T COG0332         157 LFGDGAGAVVLEATEDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDG---REVFKFAVRAMPKAIE---  230 (323)
T ss_pred             EEcCCceEEEEecCCCCcCeeeeeeeccccCCCeeeccCCCCccccccccccceeecc---HHHHHHHHHHHHHHHH---
Confidence            999999999999986 5678877778888876555555442211         11222   4788888888888875   


Q ss_pred             HhhhcCCCCccCccEEecCCCChHHHHHHHHHhhh------hhhhc--cCCCCCCC
Q 023575          233 EKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFF------NDFLR--NASLPSIC  280 (280)
Q Consensus       233 ~~L~~~gl~~~dId~~v~Hq~n~~~~~~~~~~l~~------~~~~~--NtssasI~  280 (280)
                      +.|+++|++++|||||+|||+|.+|++.+.++|++      .++++  ||||||||
T Consensus       231 ~~L~~~~l~~~dId~~vpHQan~ri~~~i~~~l~~~~~k~~~~~~~yGNtsaAsip  286 (323)
T COG0332         231 EVLEKAGLTPEDIDWFVPHQANLRIIEAIAKKLGIPEEKVVVTVDKYGNTSAASIP  286 (323)
T ss_pred             HHHHHcCCCHHHCCEEccccccHHHHHHHHHHcCCCHHHHhhHHHHhcccccchHH
Confidence            45999999999999999999999999999999987      34566  99999997

>PLN02577 hydroxymethylglutaryl-CoA synthase Back     alignment and domain information
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade Back     alignment and domain information
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade Back     alignment and domain information
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] Back     alignment and domain information
>PRK04262 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative Back     alignment and domain information
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional Back     alignment and domain information
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III Back     alignment and domain information
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PRK06840 hypothetical protein; Validated Back     alignment and domain information
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems Back     alignment and domain information
>PLN03169 chalcone synthase family protein; Provisional Back     alignment and domain information
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III Back     alignment and domain information
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs Back     alignment and domain information
>PLN03171 chalcone synthase-like protein; Provisional Back     alignment and domain information
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PLN03168 chalcone synthase; Provisional Back     alignment and domain information
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PLN03172 chalcone synthase family protein; Provisional Back     alignment and domain information
>PLN03173 chalcone synthase; Provisional Back     alignment and domain information
>PLN03170 chalcone synthase; Provisional Back     alignment and domain information
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes Back     alignment and domain information
>PLN02377 3-ketoacyl-CoA synthase Back     alignment and domain information
>PLN02932 3-ketoacyl-CoA synthase Back     alignment and domain information
>PLN02854 3-ketoacyl-CoA synthase Back     alignment and domain information
>KOG1393 consensus Hydroxymethylglutaryl-CoA synthase [Lipid transport and metabolism] Back     alignment and domain information
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02192 3-ketoacyl-CoA synthase Back     alignment and domain information
>PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase Back     alignment and domain information
>PLN00415 3-ketoacyl-CoA synthase Back     alignment and domain information
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 Back     alignment and domain information
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction Back     alignment and domain information
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species Back     alignment and domain information
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction Back     alignment and domain information
>TIGR02845 spore_V_AD stage V sporulation protein AD Back     alignment and domain information
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated Back     alignment and domain information
>PRK08304 stage V sporulation protein AD; Validated Back     alignment and domain information
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II Back     alignment and domain information
>PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways Back     alignment and domain information
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism Back     alignment and domain information
>PRK06064 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>smart00825 PKS_KS Beta-ketoacyl synthase Back     alignment and domain information
>PRK12404 stage V sporulation protein AD; Provisional Back     alignment and domain information
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK06158 thiolase; Provisional Back     alignment and domain information
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine Back     alignment and domain information
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases Back     alignment and domain information
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations Back     alignment and domain information
>PRK05656 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK12578 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK09051 beta-ketothiolase; Provisional Back     alignment and domain information
>PRK08313 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK09052 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06205 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK07108 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK08235 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK08242 acetyl-CoA acetyltransferase; Validated Back     alignment and domain information
>PRK06289 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine Back     alignment and domain information
>PRK06059 lipid-transfer protein; Provisional Back     alignment and domain information
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases Back     alignment and domain information
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II Back     alignment and domain information
>PRK05790 putative acyltransferase; Provisional Back     alignment and domain information
>PRK06954 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK08170 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated Back     alignment and domain information
>PRK06065 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK07516 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06445 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 Back     alignment and domain information
>PLN02287 3-ketoacyl-CoA thiolase Back     alignment and domain information
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK07661 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK08256 lipid-transfer protein; Provisional Back     alignment and domain information
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase Back     alignment and domain information
>PRK06066 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK07851 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed Back     alignment and domain information
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional Back     alignment and domain information
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II Back     alignment and domain information
>PTZ00455 3-ketoacyl-CoA thiolase; Provisional Back     alignment and domain information
>PRK06157 acetyl-CoA acetyltransferase; Validated Back     alignment and domain information
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional Back     alignment and domain information
>PRK08131 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06365 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed Back     alignment and domain information
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria Back     alignment and domain information
>PRK07850 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 Back     alignment and domain information
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI Back     alignment and domain information
>PRK06633 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06366 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PLN02644 acetyl-CoA C-acetyltransferase Back     alignment and domain information
>PRK09050 beta-ketoadipyl CoA thiolase; Validated Back     alignment and domain information
>PRK06504 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional Back     alignment and domain information
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase Back     alignment and domain information
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PF08540 HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A synthase C terminal; InterPro: IPR013746 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase Back     alignment and domain information
>PRK07801 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed Back     alignment and domain information
>TIGR02445 fadA fatty oxidation complex, beta subunit FadA Back     alignment and domain information
>PRK08142 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK09268 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 Back     alignment and domain information
>PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed Back     alignment and domain information
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long Back     alignment and domain information
>PRK08257 acetyl-CoA acetyltransferase; Validated Back     alignment and domain information
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK07855 lipid-transfer protein; Provisional Back     alignment and domain information
>PRK06025 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>PRK06690 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK07937 lipid-transfer protein; Provisional Back     alignment and domain information
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 Back     alignment and domain information
>KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism] Back     alignment and domain information
>COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism] Back     alignment and domain information
>KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] Back     alignment and domain information
>KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] Back     alignment and domain information
>PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain Back     alignment and domain information
>KOG1392 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] Back     alignment and domain information
>KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism] Back     alignment and domain information
>PRK06025 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06690 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 Back     alignment and domain information
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated Back     alignment and domain information
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PRK12578 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative Back     alignment and domain information
>PRK05656 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine Back     alignment and domain information
>PRK07516 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK08256 lipid-transfer protein; Provisional Back     alignment and domain information
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2 Back     alignment and domain information
>PRK04262 hypothetical protein; Provisional Back     alignment and domain information
>PRK05790 putative acyltransferase; Provisional Back     alignment and domain information
>PRK09051 beta-ketothiolase; Provisional Back     alignment and domain information
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction Back     alignment and domain information
>PLN02287 3-ketoacyl-CoA thiolase Back     alignment and domain information
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction Back     alignment and domain information
>PRK08257 acetyl-CoA acetyltransferase; Validated Back     alignment and domain information
>PRK08242 acetyl-CoA acetyltransferase; Validated Back     alignment and domain information
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed Back     alignment and domain information
>PRK07661 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06954 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>TIGR02445 fadA fatty oxidation complex, beta subunit FadA Back     alignment and domain information
>PRK06504 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional Back     alignment and domain information
>PRK06840 hypothetical protein; Validated Back     alignment and domain information
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine Back     alignment and domain information
>PRK08235 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III Back     alignment and domain information
>PRK06445 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06205 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06366 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases Back     alignment and domain information
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK07937 lipid-transfer protein; Provisional Back     alignment and domain information
>PRK09050 beta-ketoadipyl CoA thiolase; Validated Back     alignment and domain information
>PRK09052 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III Back     alignment and domain information
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs Back     alignment and domain information
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK07850 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PLN02644 acetyl-CoA C-acetyltransferase Back     alignment and domain information
>PRK06158 thiolase; Provisional Back     alignment and domain information
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases Back     alignment and domain information
>PTZ00455 3-ketoacyl-CoA thiolase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
2f82_A 450 Hmg-Coa Synthase From Brassica Juncea In The Apo-Fo 1e-146
2fa3_A 450 Hmg-Coa Synthase From Brassica Juncea In Complex Wi 1e-145
2wya_A 460 Crystal Structure Of Human Mitochondrial 3-Hydroxy- 2e-98
2p8u_A 478 Crystal Structure Of Human 3-Hydroxy-3-Methylglutar 6e-98
1x9e_A 383 Crystal Structure Of Hmg-Coa Synthase From Enteroco 4e-21
3v4x_A 388 The Biochemical And Structural Basis For Inhibition 5e-21
2hdb_A 383 Hmg-coa Synthase From Enterococcus Faecalis. Mutati 1e-20
1ysl_A 402 Crystal Structure Of Hmg-Coa Synthase From Enteroco 5e-20
3v4n_A 388 The Biochemical And Structural Basis For Inhibition 7e-20
1ysl_B 384 Crystal Structure Of Hmg-Coa Synthase From Enteroco 9e-20
1xpk_C 388 Crystal Structure Of Staphylococcus Aureus Hmg-Coa 7e-16
1xpl_B 390 Crystal Structure Of Staphylococcus Aureus Hmg-coa 8e-15
1xpk_D 388 Crystal Structure Of Staphylococcus Aureus Hmg-Coa 8e-15
1tvz_A 388 Crystal Structure Of 3-hydroxy-3-methylglutaryl-coe 1e-14
1xpk_B 388 Crystal Structure Of Staphylococcus Aureus Hmg-Coa 1e-14
3leh_A 425 The Crystal Structure Of Smu.943c From Streptococcu 2e-12
3sqz_A 389 Crystal Structure Of Hmg_coa Synthase Complexed Wit 3e-11
>pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form Length = 450 Back     alignment and structure 
Iteration: 1

 Score =  514 bits (1323), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 237/269 (88%), Positives = 252/269 (93%)
Query: 7   KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
           KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS   VT
Sbjct: 2   KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61
Query: 67  SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
           SLLEKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTA
Sbjct: 62  SLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 121
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
           AL NCVNWVES SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+AMLIGPDAPI FESKLR
Sbjct: 122 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 181
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
           GSHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEKLEG++FS+ D D
Sbjct: 182 GSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDAD 241
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNAS 275
           YFVFHSPYNKLVQKSFARL +NDFLRNAS
Sbjct: 242 YFVFHSPYNKLVQKSFARLLYNDFLRNAS 270
>pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With Acetyl-Coa And Acetyl-Cys117 Length = 450 Back     alignment and structure
>pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3- Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2) Length = 460 Back     alignment and structure
>pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa Synthase I Length = 478 Back     alignment and structure
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus Faecalis Length = 383 Back     alignment and structure
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By Hymeglusin Length = 388 Back     alignment and structure
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation Alanine 110 To Glycine Length = 383 Back     alignment and structure
>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus Faecalis With Acetoacetyl-Coa Ligand Length = 402 Back     alignment and structure
>pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By Hymeglusin Length = 388 Back     alignment and structure
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388 Back     alignment and structure
>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A Synthase From Staphylococcus Aureus Length = 388 Back     alignment and structure
>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388 Back     alignment and structure
>pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus Mutans Ua159 Length = 425 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
2f82_A 450 HMG-COA synthase; HMGS1, transferase; 2.10A {Brass 1e-105
2p8u_A 478 Hydroxymethylglutaryl-COA synthase, cytoplasmic; h 1e-103
1xpm_A 396 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s 1e-101
2v4w_A 460 Hydroxymethylglutaryl-COA synthase, mitochondrial; 1e-100
3v4n_A 388 HMG-COA synthase; hydroxymethylglutaryl-COA syntha 1e-88
3sqz_A 425 Putative hydroxymethylglutaryl-COA synthase; thiol 2e-88
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Length = 450 Back     alignment and structure
 Score =  313 bits (802), Expect = e-105
 Identities = 236/268 (88%), Positives = 251/268 (93%)

Query: 7   KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
           KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS   VT
Sbjct: 2   KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61

Query: 67  SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
           SLLEKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTA
Sbjct: 62  SLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 121

Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
           AL NCVNWVES SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+AMLIGPDAPI FESKLR
Sbjct: 122 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 181

Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
           GSHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEKLEG++FS+ D D
Sbjct: 182 GSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDAD 241

Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNA 274
           YFVFHSPYNKLVQKSFARL +NDFLRNA
Sbjct: 242 YFVFHSPYNKLVQKSFARLLYNDFLRNA 269
>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Length = 478 Back     alignment and structure
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Length = 396 Back     alignment and structure
>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* Length = 388 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
2v4w_A 460 Hydroxymethylglutaryl-COA synthase, mitochondrial; 100.0
4ewp_A350 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans 100.0
2wya_A 460 Hydroxymethylglutaryl-COA synthase, mitochondrial; 100.0
2p8u_A 478 Hydroxymethylglutaryl-COA synthase, cytoplasmic; h 100.0
3il3_A323 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 100.0
2f82_A 450 HMG-COA synthase; HMGS1, transferase; 2.10A {Brass 100.0
3gwa_A365 3-oxoacyl-(acyl-carrier-protein) synthase III; str 100.0
4efi_A354 3-oxoacyl-(acyl-carrier protein) synthase; structu 100.0
3il6_A321 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 100.0
3h78_A359 PQS biosynthetic enzyme; PQSD, anthranilic acid, a 100.0
4dfe_A333 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci 100.0
3v4n_A 388 HMG-COA synthase; hydroxymethylglutaryl-COA syntha 100.0
3sqz_A 425 Putative hydroxymethylglutaryl-COA synthase; thiol 100.0
3led_A392 3-oxoacyl-acyl carrier protein synthase III; struc 100.0
3s21_A345 3-oxoacyl-[ACP] synthase III; non-decarboxylative 100.0
1xpm_A 396 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s 100.0
3ov2_A393 Curcumin synthase; type III polyketide synthase, t 100.0
3s3l_A357 CERJ; acyltransferase, FABH homologue, KS III homo 100.0
3euo_A379 Type III pentaketide synthase; alpha helix, acyltr 100.0
3e1h_A465 PKSIIINC, putative uncharacterized protein; resorc 100.0
2x3e_A331 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, 100.0
1mzj_A339 Beta-ketoacylsynthase III; beta-ketosynthase, arom 100.0
3oit_A387 OS07G0271500 protein; type III polyketide synthase 100.0
1hnj_A317 Beta-ketoacyl-acyl carrier protein synthase III; F 100.0
1u6e_A335 3-oxoacyl-[acyl-carrier-protein] synthase III; tra 100.0
1ub7_A322 3-oxoacyl-[acyl-carrier protein] synthase; fatty a 100.0
1zow_A313 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB 100.0
2ebd_A309 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 100.0
1i88_A389 CHS2, chalcone synthase 2; polyketide synthase, tr 100.0
1ee0_A402 2-pyrone synthase; polyketide synthase, thiolase f 100.0
2p0u_A413 Stilbenecarboxylate synthase 2; polyketide synthas 100.0
1ted_A393 PKS18; thiolase fold, substrate binding tunnel, tr 100.0
3awk_A402 Chalcone synthase-like polyketide synthase; type I 100.0
3a5r_A387 Benzalacetone synthase; chalcone synthase, type II 100.0
2d3m_A406 Pentaketide chromone synthase; chalcone synthase, 100.0
3tsy_A979 Fusion protein 4-coumarate--COA ligase 1, resvera 100.0
1xes_A413 Dihydropinosylvin synthase; native structure, tran 100.0
1u0m_A382 Putative polyketide synthase; type III polyketide 100.0
2h84_A374 Steely1; thiolase-fold, type III polyketide syntha 100.0
3v7i_A413 Putative polyketide synthase; type III polyketide 100.0
3lma_A347 Stage V sporulation protein AD (spovad); NESG, str 99.94
4e1l_A 395 Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, 99.81
4dd5_A 396 Acetyl-COA acetyltransferase; structural genomics, 99.81
3ss6_A 394 Acetyl-COA acetyltransferase; structural genomics, 99.8
2iik_A 418 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m 99.8
3o04_A413 LMO2201 protein, beta-keto-acyl carrier protein sy 99.78
2gqd_A437 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli 99.76
1ox0_A430 Beta ketoacyl-acyl carrier protein synthase; trans 99.75
3goa_A 387 3-ketoacyl-COA thiolase; metabolism, fatty acid, p 99.75
1e5m_A416 KAS II, beta ketoacyl acyl carrier protein synthas 99.75
1tqy_A424 Beta-ketoacyl synthase/acyl transferase; alpha-bet 99.73
3svk_A 407 Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, 99.73
3kzu_A428 3-oxoacyl-(acyl-carrier-protein) synthase II; seat 99.72
3ho9_A427 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, 99.72
1j3n_A408 3-oxoacyl-(acyl-carrier protein) synthase II; cond 99.72
4ewg_A412 Beta-ketoacyl synthase; ssgcid, structural genomic 99.71
4ddo_A451 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci 99.7
2iwz_A438 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho 99.69
1tqy_B415 Actinorhodin polyketide putative beta-ketoacyl SY; 99.67
1ulq_A 401 Putative acetyl-COA acetyltransferase; structural 99.66
1wl4_A 397 Acetyl-coenzyme A acetyltransferase 2; thiolase fo 99.65
3mqd_A428 Beta-ketoacyl synthase; ssgcid, ALS collaborative 99.65
2ix4_A431 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke 99.65
2gp6_A434 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol 99.64
2vu1_A 392 Acetyl-COA acetyltransferase; acyltransferase, PHB 99.63
1afw_A 393 3-ketoacetyl-COA thiolase; fatty acid metabolism; 99.62
1wdk_C 390 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame 99.62
2ib8_A 395 Acetyl-COA acetyltransferase; thiolase fold, potas 99.6
2wu9_A 442 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o 99.59
2qo3_A 915 Eryaii erythromycin polyketide synthase modules 3; 99.59
2wge_A416 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta 99.58
2vba_A406 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop 99.55
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 99.55
2hg4_A 917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 99.54
4egv_A 520 Acetyl-COA acetyltransferase; NEW SUB-family, thio 99.15
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 98.95
2pff_A 1688 Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl 98.75
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 98.62
2uv8_A 1887 Fatty acid synthase subunit alpha (FAS2); fatty ac 98.4
2uv9_A 1878 Fatty acid synthase alpha subunits; fungal, dehydr 98.36
3lma_A347 Stage V sporulation protein AD (spovad); NESG, str 95.0
1mzj_A339 Beta-ketoacylsynthase III; beta-ketosynthase, arom 92.54
4ewp_A350 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans 92.3
3gwa_A365 3-oxoacyl-(acyl-carrier-protein) synthase III; str 91.95
3s21_A345 3-oxoacyl-[ACP] synthase III; non-decarboxylative 91.52
1u6e_A335 3-oxoacyl-[acyl-carrier-protein] synthase III; tra 91.46
4dfe_A333 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci 91.38
3h78_A359 PQS biosynthetic enzyme; PQSD, anthranilic acid, a 91.25
1hnj_A317 Beta-ketoacyl-acyl carrier protein synthase III; F 91.12
4efi_A354 3-oxoacyl-(acyl-carrier protein) synthase; structu 90.62
3il3_A323 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 90.34
2x3e_A331 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, 89.29
1zow_A313 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB 89.04
4egv_A520 Acetyl-COA acetyltransferase; NEW SUB-family, thio 88.77
1ted_A393 PKS18; thiolase fold, substrate binding tunnel, tr 88.33
3s3l_A357 CERJ; acyltransferase, FABH homologue, KS III homo 88.15
4dd5_A396 Acetyl-COA acetyltransferase; structural genomics, 87.29
4e1l_A395 Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, 87.19
1u0m_A382 Putative polyketide synthase; type III polyketide 86.87
2ebd_A309 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 86.77
3led_A392 3-oxoacyl-acyl carrier protein synthase III; struc 85.89
1ub7_A322 3-oxoacyl-[acyl-carrier protein] synthase; fatty a 85.54
3svk_A407 Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, 85.39
3tsy_A979 Fusion protein 4-coumarate--COA ligase 1, resvera 84.89
3ho9_A427 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, 82.16
3ss6_A394 Acetyl-COA acetyltransferase; structural genomics, 80.82
>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} Back     alignment and structure
>2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens} Back     alignment and structure
>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Back     alignment and structure
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} Back     alignment and structure
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Back     alignment and structure
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A Back     alignment and structure
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} Back     alignment and structure
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* Back     alignment and structure
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* Back     alignment and structure
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} Back     alignment and structure
>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* Back     alignment and structure
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} Back     alignment and structure
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A Back     alignment and structure
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Back     alignment and structure
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A Back     alignment and structure
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* Back     alignment and structure
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} Back     alignment and structure
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} Back     alignment and structure
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A Back     alignment and structure
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* Back     alignment and structure
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A Back     alignment and structure
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A Back     alignment and structure
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} Back     alignment and structure
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A Back     alignment and structure
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Back     alignment and structure
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A Back     alignment and structure
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} Back     alignment and structure
>3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} Back     alignment and structure
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A Back     alignment and structure
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} Back     alignment and structure
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} Back     alignment and structure
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} Back     alignment and structure
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} Back     alignment and structure
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} Back     alignment and structure
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} Back     alignment and structure
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A Back     alignment and structure
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} Back     alignment and structure
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} Back     alignment and structure
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A Back     alignment and structure
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Back     alignment and structure
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} Back     alignment and structure
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* Back     alignment and structure
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A Back     alignment and structure
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A Back     alignment and structure
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* Back     alignment and structure
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A Back     alignment and structure
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... Back     alignment and structure
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A Back     alignment and structure
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* Back     alignment and structure
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* Back     alignment and structure
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Back     alignment and structure
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* Back     alignment and structure
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Back     alignment and structure
>4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Back     alignment and structure
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Back     alignment and structure
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Back     alignment and structure
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A Back     alignment and structure
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} Back     alignment and structure
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A Back     alignment and structure
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A Back     alignment and structure
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A Back     alignment and structure
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} Back     alignment and structure
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* Back     alignment and structure
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* Back     alignment and structure
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} Back     alignment and structure
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} Back     alignment and structure
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} Back     alignment and structure
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A Back     alignment and structure
>4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} Back     alignment and structure
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A Back     alignment and structure
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* Back     alignment and structure
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} Back     alignment and structure
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} Back     alignment and structure
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} Back     alignment and structure
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} Back     alignment and structure
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Back     alignment and structure
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Back     alignment and structure
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 280
d1xpma1166 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA 6e-30
d1xpma2 221 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl Co 6e-29
d1u6ea1184 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (Fa 6e-09
>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 166 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

 Score =  108 bits (271), Expect = 6e-30
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 7/169 (4%)

Query: 9   VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
           +GI  ++ Y P   V    L     V   K+ +G+GQ  MA     +D++SM       +
Sbjct: 2   IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61

Query: 69  LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAAL 128
           +         IG + V +E+ +D +K+    +  +            +   ACY  T A+
Sbjct: 62  ITDEDKKK--IGMVIVATESAVDAAKAAAVQIHNLLGIQPF--ARCFEMKEACYAATPAI 117

Query: 129 FNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPD 176
               +++   +      LV+ TD+A Y       PT GA AVAM+I  +
Sbjct: 118 QLAKDYLA--TRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHN 164
>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 221 Back     information, alignment and structure
>d1u6ea1 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
d1teda_372 Polyketide synthase PKS18 {Mycobacterium tuberculo 100.0
d1hnja1174 Ketoacyl-ACP synthase III (FabH) {Escherichia coli 100.0
d1u6ea1184 Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu 100.0
d1mzja1181 Priming beta-ketosynthase from the r1128 polyketid 100.0
d1ub7a1172 Ketoacyl-ACP synthase III (FabH) {Thermus thermoph 100.0
d1xpma1166 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap 100.0
d1u0ma1200 Putative polyketide synthase SCO1206 {Streptomyces 99.97
d1bi5a1235 Chalcone synthase {Alfalfa (Medicago sativa) [TaxI 99.97
d1hnja2143 Ketoacyl-ACP synthase III (FabH) {Escherichia coli 99.48
d1mzja2153 Priming beta-ketosynthase from the r1128 polyketid 99.44
d1ub7a2149 Ketoacyl-ACP synthase III (FabH) {Thermus thermoph 99.42
d1u6ea2148 Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu 99.34
d1ee0a2160 Pyrone synthase (PyS, chalcone synthase 2) {Gerber 99.08
d1u0ua2156 Dihydropinosylvin synthase {Scots pine (Pinus sylv 99.07
d1j3na1249 Beta-ketoacyl-ACP synthase II {Thermus thermophilu 99.06
d1bi5a2154 Chalcone synthase {Alfalfa (Medicago sativa) [TaxI 99.05
d1ulqa1273 Beta-ketoadipyl CoA thiolase {Thermus thermophilus 99.04
d1ox0a1256 Beta-ketoacyl-ACP synthase II {Streptococcus pneum 99.02
d1m3ka1268 Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 98.99
d2gfva1250 Beta-ketoacyl-ACP synthase II {Escherichia coli [T 98.92
d1xpma2 221 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap 98.84
d1u0ma2148 Putative polyketide synthase SCO1206 {Streptomyces 98.8
d1wdkc1262 Fatty oxidation complex beta subunit (3-ketoacyl-C 98.79
d1e5ma1250 Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ 98.75
d1afwa1269 Thiolase {Baker's yeast (Saccharomyces cerevisiae) 98.69
d2ix4a1270 Beta-ketoacyl-ACP synthase II {Thale cress (Arabid 98.44
d1tqya1216 Actinorhodin polyketide putative beta-ketoacyl syn 98.26
d2vbaa1253 Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta 98.12
d1tqyb1208 Actinorhodin polyketide putative beta-ketoacyl syn 97.86
d1u6ea2148 Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu 95.64
d1hnja2143 Ketoacyl-ACP synthase III (FabH) {Escherichia coli 95.28
d1ub7a2149 Ketoacyl-ACP synthase III (FabH) {Thermus thermoph 95.07
d1mzja2153 Priming beta-ketosynthase from the r1128 polyketid 94.48
d1wdkc2128 Fatty oxidation complex beta subunit (3-ketoacyl-C 90.92
d1u0ma2148 Putative polyketide synthase SCO1206 {Streptomyces 89.77
d1tqyb2194 Actinorhodin polyketide putative beta-ketoacyl syn 88.02
d1tqya2205 Actinorhodin polyketide putative beta-ketoacyl syn 87.6
d1m3ka2124 Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 86.06
d1teda_372 Polyketide synthase PKS18 {Mycobacterium tuberculo 86.03
d1afwa2124 Thiolase {Baker's yeast (Saccharomyces cerevisiae) 84.87
d1wdkc2128 Fatty oxidation complex beta subunit (3-ketoacyl-C 84.79
d1m3ka2124 Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 82.92
d1j3na2159 Beta-ketoacyl-ACP synthase II {Thermus thermophilu 82.46
d1tqyb2194 Actinorhodin polyketide putative beta-ketoacyl syn 82.0
d1ulqa2125 Beta-ketoadipyl CoA thiolase {Thermus thermophilus 80.25
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Polyketide synthase PKS18
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.1e-42  Score=316.33  Aligned_cols=261  Identities=16%  Similarity=0.124  Sum_probs=183.9

Q ss_pred             eeEEeEEEEecCCccccHHHHHHhhCC---CC---Ce---eeeccCceeeecCCC-----------------------CC
Q 023575            8 NVGILALDIYFPPTCVLQEALEVHDGV---SK---GK---YTVGLGQDCMAFCSE-----------------------VE   55 (280)
Q Consensus         8 ~~~I~~ig~~lP~~~v~~~~~~~~~g~---~~---~~---~~~~ig~r~~~~~~~-----------------------~e   55 (280)
                      ..+|.|+|+|+|+++|+|+|+.+.++.   .+   ++   +....|.++||++.+                       +|
T Consensus        11 ~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e   90 (372)
T d1teda_          11 VAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLFYE   90 (372)
T ss_dssp             EEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHHHHH
T ss_pred             eEEEEEEEEeCCCeEEcHHHHHHHHHhhcCChHHHHHHHHHHHccCCcccceeccccccchhhhhhcCCCHHHHHHHHHh
Confidence            478999999999999999999887531   11   12   222334445555532                       25


Q ss_pred             CHHHHHHHHHHHHHHHcCCCCCCccEEEEecccCCCCCCchHHHHHHHHHhcCCCCeeeeecc-ccCchHHHHHHHHHHH
Q 023575           56 DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNW  134 (280)
Q Consensus        56 ~~~~la~~Aa~~aL~~agi~~~~Id~li~~t~t~~~~~p~~a~~l~~~l~~~g~~~~~~~dv~-~~C~g~~~aL~~A~~~  134 (280)
                      ++.+|+++|+++||+++|++|+|||+||++|+| ++..|+++++|++.|++.  +.+..++++ .||+||++||++|.++
T Consensus        91 ~~~~la~~Aa~~aL~~ag~~~~dId~lI~~t~t-~~~~P~~a~~v~~~LGl~--~~~~~~~~~~~gC~g~~~aL~~A~~~  167 (372)
T d1teda_          91 HAVPLAVDVSKRALAGLPYRAAEIGLLVLATST-GFIAPGVDVAIVKELGLS--PSISRVVVNFMGCAAAMNALGTATNY  167 (372)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESS-CCCSSCHHHHHHHHHTCC--TTCEEEEEESCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccC-CCCCchHHHHHHhhhccC--CceeEeeccccCccHHHHHHHHHHHH
Confidence            678999999999999999999999999999987 568999999998888653  346678886 5999999999999999


Q ss_pred             HHhcCCCCCeEEEEEecccccc----CC----CCCcccCCceEEEEECCCCCc-eeeccccccccccccccccCC-CCC-
Q 023575          135 VESASWDGRYGLVVCTDSAVYA----EG----PARPTGGAAAVAMLIGPDAPI-AFESKLRGSHMSHAYDFYKPN-LAS-  203 (280)
Q Consensus       135 l~~g~~~~~~vLvv~~e~~s~~----~~----~~~~~fGDgAaA~ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~-  203 (280)
                      +++|++  ++||||++|.++..    +.    ....+|||||+|+||++++.. .+........+... ..+... .+. 
T Consensus       168 l~sg~~--~~~LVV~~E~~s~~~~~~d~~~~~~~~~lfGDGAaA~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  244 (372)
T d1teda_         168 VRAHPA--MKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFS-QLLDNTEDGIV  244 (372)
T ss_dssp             HHHSTT--CEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEE-EECTTCTTSEE
T ss_pred             HhcCCC--ccceeeeehhhcccccCCCcchhhhhhhhhcccceeEEeccCCcccccCCceeEEecccc-cccCCCccccc
Confidence            999954  99999999998732    11    134689999999999987542 22211111111100 001100 000 


Q ss_pred             ------cccccCCcchHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCccEEecCCCChHHHHHHHHHhhhh--------h
Q 023575          204 ------EYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFN--------D  269 (280)
Q Consensus       204 ------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~dId~~v~Hq~n~~~~~~~~~~l~~~--------~  269 (280)
                            .+..+++.   +++......+.+.+.   ++|+++|++++|||+|++||+|.++++.+.++|++.        +
T Consensus       245 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~---~~L~~~gl~~~did~~i~Hq~~~~i~~~i~~~Lgl~~ek~~~s~~  318 (372)
T d1teda_         245 LGVNHNGITCELSE---NLPGYIFSGVAPVVT---EMLWDNGLQISDIDLWAIHPGGPKIIEQSVRSLGISAELAAQSWD  318 (372)
T ss_dssp             EEEETTEEEEEECT---THHHHHHHHHHHHHH---HHHHHTTCCGGGCSCEEECCSCHHHHHHHHHHHTCCGGGGHHHHH
T ss_pred             cCCCCCcceeechH---HHHHHHHHHHHHHHH---HHHHhcCCCHHHhhhhhccCccHHHHHHHHHHcCCCHHHhhhhHH
Confidence                  11111121   233333344444443   349999999999999999999999999999999872        1


Q ss_pred             -hhc--cCCCCCCC
Q 023575          270 -FLR--NASLPSIC  280 (280)
Q Consensus       270 -~~~--NtssasI~  280 (280)
                       +.+  ||+|||||
T Consensus       319 ~l~~~GN~~sasip  332 (372)
T d1teda_         319 VLARFGNMLSVSLI  332 (372)
T ss_dssp             HHHHHCBCTHHHHH
T ss_pred             HHhccCCcHHHHHH
Confidence             233  99999985
>d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} Back     information, alignment and structure
>d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} Back     information, alignment and structure
>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]} Back     information, alignment and structure
>d1u0ua2 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {Scots pine (Pinus sylvestris) [TaxId: 3349]} Back     information, alignment and structure
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} Back     information, alignment and structure
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} Back     information, alignment and structure
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Back     information, alignment and structure
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Back     information, alignment and structure
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} Back     information, alignment and structure
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} Back     information, alignment and structure
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} Back     information, alignment and structure
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} Back     information, alignment and structure
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} Back     information, alignment and structure
>d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure