Citrus Sinensis ID: 023588

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MNDDNWIFSHLDEFFDDVVDTLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISCHRPQVKQKPSSTDTSSSRSSYVCNKSNDGKYLLLSQTSSPISVLESGGSCSADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETASESGSEMNLTEKPVRKKQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNKGRL
Secondary Structure (PSIPRED)
cccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccEEEccccHHHcccccccHHcccccccccccHHHHHcccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccEEccccccEEEccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccHHHcccEEEccccccccccccccccccccHccccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MNDDNWIFSHLDEFFDDVVDTLEDleacnigvddwnanfealepppfgwtdfpvvptsnhischrpqvkqkpsstdtsssrssyvcnksndgkylllsqtsspisvlesggscsadkhvpinpkLVFAVKRarskrrrpatlnplfiypfisstsstsedyhpetasesgsemnltekpvrkkqkrkkNLTVLSgsrenkklsfqqtdtprkcmhcevaetpqwregpmgpktlcnacgvryrsgrlvpeyrpaasptfvpslhsnSHKRIMEMRNKGRL
Flexible Loop (DISEMBL)
MNDDNWIFSHLDEFFDDVVDTLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHIschrpqvkqkpsstdtsssrssYVCNKSNDGKYLLLSQTSSPISVLESGgscsadkhvpinPKLVFavkrarskrrrpatlnplfiypfisstsstsedyhpetasesgsemnltekpvrkkqkrkknltvlsgsrenkklsfqqtdtprkcmHCEVAetpqwregpmgpKTLCNACGVRYRSGRLVPeyrpaasptfvpslhsnshkrimemrnkgrl
Low Complexity Region (SEG)
MNDDNWIFSHLDEFFDDVVDTLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISCHRPQVKQKPsstdtsssrssYVCNKSNDGKYLLLSQTSSPISVLESGGSCSADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETASESGSEMNLTEkpvrkkqkrkkNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNKGRL
Disordered region (IsUnstruct)
****NWIFSHLDEFFDDVVDTLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHI********************************YLL**********************VPINPKLVFAVK**********TLNPLFIYPF***************************************************************MHCEVA****WR***MGPKTLCNACGVRYRSGRLVPEY*****************************
Disordered Region (DISOPRED)
***DNWIFSHLDEFFDDVVDTLEDLEACNIGVDDWN**********************************************************************************************************************************************************************************HCEVAETPQWREGPMGPKTLCNACGVR***************************************
Disordered Region (DISEMBL)
MNDDNWIFSHLDEFFDDVVDTLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHIS***********************CNKSNDGKYLLLSQTSSPISVLESGGSCSADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISST***********************************LTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNKGRL
Disordered Region (DISPRO)
**DDNWIFSHLDEFFDDVVDTLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISCHR*****************************LLLSQTSSPISVLESGGSCSA**H*P*NPKLVFA*KRARSKRRRPATLNPLFIYP************************************************************PRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVP*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNDDNWIFSHLDEFFDDVVDTLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISCHRPQVKQKPSSTDTSSSRSSYVCNKSNDGKYLLLSQTSSPISVLESGGSCSADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETASESGSEMNLTEKPVRKKQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNKGRL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
Q6DBP8	303	GATA transcription factor	yes	no	0.882	0.815	0.431	1e-44
Q8VZP4	308	GATA transcription factor	no	no	0.882	0.801	0.409	6e-44
Q9SKN6	291	Putative GATA transcripti	no	no	0.871	0.838	0.403	3e-37
Q9SV30	322	GATA transcription factor	no	no	0.239	0.208	0.850	6e-31
P69781	331	GATA transcription factor	no	no	0.532	0.450	0.445	1e-29
Q9FH57	339	GATA transcription factor	no	no	0.328	0.271	0.585	6e-28
O82632	308	GATA transcription factor	no	no	0.342	0.311	0.54	1e-27
Q8LAU9	274	GATA transcription factor	no	no	0.239	0.244	0.746	6e-26
O49743	240	GATA transcription factor	no	no	0.25	0.291	0.7	8e-26
O49741	264	GATA transcription factor	no	no	0.239	0.253	0.701	4e-25

>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/285 (43%), Positives = 162/285 (56%), Gaps = 38/285 (13%)

Query: 13  EFFDDVVD----TLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISC----- 63
           +FFDD+++     L+D++  N G  DW   F+ LEPPP     FP +P S+  SC     
Sbjct: 20  DFFDDLINHLDVPLDDIDTTN-GEGDWVDRFQDLEPPPMDM--FPTLP-SDLTSCGSGMA 75

Query: 64  ---------HRPQVKQKPSSTDTSSSRSSYVCNKSNDGKYLLLSQTSSPISVLE-SGGSC 113
                    + P +KQ  SS   SS+   +  +   + K   L Q+ SP+SVLE S GS 
Sbjct: 76  KAPRVDIQRNIPALKQSYSSEALSSTL--HQSSAPPEIKVSKLFQSLSPVSVLENSYGSL 133

Query: 114 SADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETASESGSEM 173
           S   H   + +L F VK  RSKR+RP TL   +++P        S    PE+     SE 
Sbjct: 134 ST--HNNGSQRLAFPVKGMRSKRKRPTTLRLSYLFPSEPRKPEKSTPGKPESECYFSSEQ 191

Query: 174 NLTEKPVRKKQKRKKNLTVLSGSRENKKLSFQQTD-TPRKCMHCEVAETPQWREGPMGPK 232
           +        K+KRK +LT  + S     L    +D   RKC HCE  +TPQWREGP GPK
Sbjct: 192 H-------AKKKRKIHLTTRTVS---STLEASNSDGIVRKCTHCETTKTPQWREGPSGPK 241

Query: 233 TLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
           TLCNACGVR+RSGRLVPEYRPA+SPTF+P++HSNSH++I+EMR K
Sbjct: 242 TLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRKIIEMRRK 286

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZP4|GAT10_ARATH GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1

 Score =  177 bits (450), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/283 (40%), Positives = 161/283 (56%), Gaps = 36/283 (12%)

Query: 13  EFFDDVVD----TLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISCHR--- 65
           +FFD + +     LED+++ N G  DW A F+ LEPPP     FP +P S+  SC +   
Sbjct: 20  DFFDGLTNHLDCPLEDIDSTN-GEGDWVARFQDLEPPPLDM--FPALP-SDLTSCPKGAA 75

Query: 66  ---------PQVKQKPSSTDTSSSRSS-YVCNKSNDGKYLLLSQTSSPISVLE-SGGSCS 114
                    P +KQ  SS   S   S+ +  +   D K   L Q+ +P+SVLE S GS S
Sbjct: 76  RVRIPNNMIPALKQSCSSEALSGINSTPHQSSAPPDIKVSYLFQSLTPVSVLENSYGSLS 135

Query: 115 ADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETASESGSEMN 174
                  + +L F VK  RSKRRRP T+   +++PF    S         T  ES +E  
Sbjct: 136 TQNSG--SQRLAFPVKGMRSKRRRPTTVRLSYLFPFEPRKS---------TPGESVTEGY 184

Query: 175 LTEKPVRKKQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTL 234
            + +   +  K+K+ + +++ +  +   S +     R C HCE   TPQWR+GP GPKTL
Sbjct: 185 YSSE---QHAKKKRKIHLITHTESSTLESSKSDGIVRICTHCETITTPQWRQGPSGPKTL 241

Query: 235 CNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
           CNACGVR++SGRLVPEYRPA+SPTF+PS+HSNSH++I+EMR K
Sbjct: 242 CNACGVRFKSGRLVPEYRPASSPTFIPSVHSNSHRKIIEMRKK 284

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKN6|GAT13_ARATH Putative GATA transcription factor 13 OS=Arabidopsis thaliana GN=GATA13 PE=3 SV=2

 Score =  155 bits (392), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/290 (40%), Positives = 156/290 (53%), Gaps = 46/290 (15%)

Query: 1   MNDDNWI----FSHL-DEFFDDVVDTLEDLEACNI--GVD--DWNANFEALEPPPFGWTD 51
           MN+D W+    F  L D F D++VD   D+   +I  G D  DW+A F+ L PPP     
Sbjct: 1   MNNDLWLPEEDFKGLPDNFLDNLVDPTNDVSVEDIETGDDEGDWDAKFQKLVPPPLD--- 57

Query: 52  FPVVPTSNHISC--HRPQV-KQKPSSTDTSSSRS-SYVCNKSNDGKYLLLSQTSSPISVL 107
             ++  S   +C   R QV K  P    +SSS   S V N   + K   L Q+ SP+SVL
Sbjct: 58  -ELMSLSYEFTCNGQRVQVQKHVPILKQSSSSEVFSTVDNSPPNVKVSKLLQSLSPVSVL 116

Query: 108 ESGGSCSADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETAS 167
           ++     + ++   + KL F VK  RSKR+RP  L   F+  F+   S   + + P+  S
Sbjct: 117 KNTNGSGSPQNPNGDQKLAFLVKGIRSKRKRPTLLRVTFLKSFLLEMS---QQFAPD-ES 172

Query: 168 ESGSEMNLTEKPVRKKQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREG 227
           ES SE++  +K  + K +R K                        C HCE   TPQWREG
Sbjct: 173 ES-SEISALKKRKKNKSRRLK------------------------CTHCETTTTPQWREG 207

Query: 228 PMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
           P G KTLCNACG+R+RSGRLV EYRPAASPTF+P++HSN HK+I+ MR K
Sbjct: 208 PNGRKTLCNACGIRFRSGRLVLEYRPAASPTFIPTVHSNLHKKIIYMRMK 257

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV30|GATA8_ARATH GATA transcription factor 8 OS=Arabidopsis thaliana GN=GATA8 PE=2 SV=1

 Score =  134 bits (338), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 57/67 (85%), Positives = 62/67 (92%)

Query: 211 RKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKR 270
           RKCMHCEV +TPQWR GPMGPKTLCNACGVRY+SGRL PEYRPAASPTF P+LHSNSHK+
Sbjct: 229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKK 288

Query: 271 IMEMRNK 277
           + EMRNK
Sbjct: 289 VAEMRNK 295

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|P69781|GAT12_ARATH GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 98/173 (56%), Gaps = 24/173 (13%)

Query: 120 PINPKLVFAVKRARSKRRRPATLN---------PLFIYPFISSTSSTSEDY-HPETASES 169
           PI    V    +ARSKR R A  N           +  PF   T  +S+ +  P T+   
Sbjct: 128 PIFTTDVSVPAKARSKRSRAAACNWASRGLLKETFYDSPFTGETILSSQQHLSPPTSPP- 186

Query: 170 GSEMNLTEKPVRKKQKRKKNLTVLSGSRENKKLSFQQTDTP--RKCMHCEVAETPQWREG 227
                L   P+ KKQ       V  G R  K +S  ++     R+C+HC   +TPQWR G
Sbjct: 187 -----LLMAPLGKKQ------AVDGGHRRKKDVSSPESGGAEERRCLHCATDKTPQWRTG 235

Query: 228 PMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNKGRL 280
           PMGPKTLCNACGVRY+SGRLVPEYRPAASPTFV + HSNSH+++ME+R +  +
Sbjct: 236 PMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKEM 288

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH57|GATA5_ARATH GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1

 Score =  124 bits (312), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 68/99 (68%), Gaps = 7/99 (7%)

Query: 179 PVRKKQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTLCNAC 238
           P  KK K++   +V SG         QQ    RKC HC V +TPQWR GPMG KTLCNAC
Sbjct: 224 PFPKKHKKRSAESVFSGE-------LQQLQPQRKCSHCGVQKTPQWRAGPMGAKTLCNAC 276

Query: 239 GVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
           GVRY+SGRL+PEYRPA SPTF   LHSN H++++EMR K
Sbjct: 277 GVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRK 315

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O82632|GATA9_ARATH GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 72/100 (72%), Gaps = 4/100 (4%)

Query: 181 RKKQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTLCNACGV 240
           +KKQ+R K          +  +   ++   R+C+HC   +TPQWR GPMGPKTLCNACGV
Sbjct: 171 KKKQRRVKEQDFAG----DMDVDCGESGGGRRCLHCATEKTPQWRTGPMGPKTLCNACGV 226

Query: 241 RYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNKGRL 280
           RY+SGRLVPEYRPA+SPTFV + HSNSH+++ME+R +  +
Sbjct: 227 RYKSGRLVPEYRPASSPTFVMARHSNSHRKVMELRRQKEM 266

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAU9|GATA1_ARATH GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2

 Score =  117 bits (294), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 56/67 (83%)

Query: 211 RKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKR 270
           RKC HC   +TPQWR GP GPKTLCNACGVRY+SGRLVPEYRPA SPTF   LHSNSH++
Sbjct: 194 RKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRK 253

Query: 271 IMEMRNK 277
           I+EMR +
Sbjct: 254 IVEMRKQ 260

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O49743|GATA4_ARATH GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1

 Score =  117 bits (294), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 60/70 (85%)

Query: 208 DTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNS 267
           D  R+C HC   +TPQWR GP+GPKTLCNACGVRY+SGRLVPEYRPA+SPTFV + HSNS
Sbjct: 155 DGARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNS 214

Query: 268 HKRIMEMRNK 277
           H+++ME+R +
Sbjct: 215 HRKVMELRRQ 224

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O49741|GATA2_ARATH GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 59/67 (88%)

Query: 211 RKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKR 270
           R+C HC   +TPQWR GP+GPKTLCNACGVR++SGRLVPEYRPA+SPTFV + HSNSH++
Sbjct: 179 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRK 238

Query: 271 IMEMRNK 277
           +ME+R +
Sbjct: 239 VMELRRQ 245

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
297826101	320	hypothetical protein ARALYDRAFT_901675 [	0.939	0.821	0.424	9e-48
356543476	326	PREDICTED: GATA transcription factor 10-	0.967	0.831	0.412	7e-46
224132502	301	GATA zinc finger protein regulating nitr	0.921	0.857	0.439	3e-44
12711287	305	GATA-1 zinc finger protein [Nicotiana ta	0.85	0.780	0.431	1e-43
255647858	327	unknown [Glycine max]	0.975	0.834	0.401	6e-43
15223086	303	GATA transcription factor 11 [Arabidopsi	0.882	0.815	0.431	8e-43
15223085	308	GATA transcription factor 10 [Arabidopsi	0.882	0.801	0.409	4e-42
8778844	821	T6D22.9 [Arabidopsis thaliana]	0.882	0.300	0.409	4e-42
356550206	327	PREDICTED: GATA transcription factor 11-	0.975	0.834	0.397	4e-42
297849094	303	zinc finger family protein [Arabidopsis	0.889	0.821	0.434	5e-42

>gi|297826101|ref|XP_002880933.1| hypothetical protein ARALYDRAFT_901675 [Arabidopsis lyrata subsp. lyrata] gi|297326772|gb|EFH57192.1| hypothetical protein ARALYDRAFT_901675 [Arabidopsis lyrata subsp. lyrata]

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 124/292 (42%), Positives = 172/292 (58%), Gaps = 29/292 (9%)

Query: 1   MNDDNWI----FSHL-DEFFDDVVD-----TLEDLEACNIGVDDWNANFEALEPPPFGWT 50
           M++ +W+    F  L D FFD+++D     +LED+E  +    DW+A F+ L PPP    
Sbjct: 1   MSNGSWLPEEDFKGLSDNFFDNLIDPNDDFSLEDIETAD-DEGDWDAGFQNLVPPPLDV- 58

Query: 51  DFPVVPTSNHISCHRPQV---KQKPSSTDTSSSRSSYVCNKSNDGKYLLLSQTSSPISVL 107
              +   S+  SC+  +V   K  PS   + SS  S V N  +D K   L Q+SSP+SVL
Sbjct: 59  ---LTSLSSEFSCNGQRVPVQKPVPSLKQSCSSEVSTVDNSPSDVKVSKLFQSSSPVSVL 115

Query: 108 ES--GGSCSADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPET 165
           E+  G   S + H  +  KL F +K  RSKR+RP  L   F+  F       S+ + P+ 
Sbjct: 116 ENTNGSVSSLNLHRAL--KLAFPLKGIRSKRKRPTLLRVTFLQAF---GFEMSQQFAPD- 169

Query: 166 ASESGSEMNLTEKPVRKKQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWR 225
             ES SE+NL+ + +   +KRK+N +  +    N    F      +KC HCE   TPQWR
Sbjct: 170 --ESESEINLSSE-ISANKKRKRNKSRPTHQVHNTPKPFNSGGRVQKCTHCETTNTPQWR 226

Query: 226 EGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
           EGP GPKTLCNACGVR+RSGRLVPEYRPA+SPTF+P++HSN H++I++MR+K
Sbjct: 227 EGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPTVHSNMHRKIIQMRSK 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543476|ref|XP_003540186.1| PREDICTED: GATA transcription factor 10-like [Glycine max]

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 123/298 (41%), Positives = 166/298 (55%), Gaps = 27/298 (9%)

Query: 4   DNWIFSH-----LDEFFDDVVDT----LEDLEACNIGVDDWNANFEALEPPPFGWTDFPV 54
           D+W F +      DE FDDV++     LED++A  +  +DW+A  + LE P F       
Sbjct: 10  DSWFFDNNFNGLSDEIFDDVINFFDFPLEDVDANGVE-EDWDAQLKCLEDPRFDVYSASS 68

Query: 55  VPTSNHISCHRPQVKQKPSSTDTSSSRSSYVC--------------NKSNDGKYLLLSQT 100
                     +PQ+  K S++    S    +               N +++GK L   QT
Sbjct: 69  AGLCAETQNEKPQLGMKLSASSNGISPIKQLAKAPGPAYGKTIPHQNVTSNGKDLHQFQT 128

Query: 101 SSPISVLESGGSCSADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSED 160
            +   V     S S+        + V  VKRARSKR+RP+  +PLF  P I +  +  +D
Sbjct: 129 YTYSPVSVFESSSSSSVENSNFDRPVIPVKRARSKRQRPSNFSPLFSIPLIVNLPAVRKD 188

Query: 161 YHPETASESGSEMNLTEKPVRK-KQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVA 219
                AS+S    N+      K K++RKK+L++LS   E  + S  ++  PRKCMHCEV 
Sbjct: 189 QR-TAASDSDFGTNVAGNLSNKVKKQRKKDLSLLSDV-EMTRSSSPESGPPRKCMHCEVT 246

Query: 220 ETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
           +TPQWREGPMGPKTLCNACGVRYRSGRL PEYRPAASPTFV SLHSN HK+++EMR++
Sbjct: 247 KTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSR 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132502|ref|XP_002328301.1| GATA zinc finger protein regulating nitrogen assimilation [Populus trichocarpa] gi|222837816|gb|EEE76181.1| GATA zinc finger protein regulating nitrogen assimilation [Populus trichocarpa]

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/289 (43%), Positives = 166/289 (57%), Gaps = 31/289 (10%)

Query: 12  DEFFDDVVDT----LEDLEACNIGVDDWNANFEALEPPPFGW-TDFPVVPTSNHISCHRP 66
           D FF+D +      LED+E      +DW + F  LEPP     T F         S   P
Sbjct: 20  DNFFEDTLGCFDFPLEDVEPNGDDGEDWESKFRHLEPPSSNLLTTFSTALCGEDASSLEP 79

Query: 67  -------------QVKQKPSSTDTSSSRSSYVCNKSNDGKYLLLSQTSSPISVLESGGS- 112
                        Q+K   SS + SSSRS  +  +S+D KY  L Q +SP+SVLES GS 
Sbjct: 80  NYNSCSVLLNGSLQLKHWASSAEASSSRSKPILCRSSDSKYSHLFQATSPVSVLESSGSS 139

Query: 113 CSADKHVPINPKLVFAVKRARSK--RRRPATLNPLFIYPFISSTSSTSEDYHPETASESG 170
           C  +      PK V  VKR RSK  R R  T      +PFI  T+  S+ ++   +S+  
Sbjct: 140 CPTENATTYYPKFVTPVKRPRSKLPRLRRHT------FPFIP-TACASKKFYCSASSDPE 192

Query: 171 SEMNLTEKPV--RKKQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREGP 228
            E    E+ +   +KQ++K+NL +LS + E      Q  +T R+C HC+V +TPQWREGP
Sbjct: 193 LEYYNDEEILDSSRKQQKKRNLMLLSSAVEMAPKMKQPVET-RRCTHCQVTKTPQWREGP 251

Query: 229 MGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
           +GPKTLCNACGVRYRSGRL+PEYRPAASPTFVP LHSNSH++++EMR +
Sbjct: 252 LGPKTLCNACGVRYRSGRLLPEYRPAASPTFVPFLHSNSHRKVLEMRKQ 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12711287|emb|CAC28528.1| GATA-1 zinc finger protein [Nicotiana tabacum]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/278 (43%), Positives = 159/278 (57%), Gaps = 40/278 (14%)

Query: 11  LDEFFDDVVD----TLEDLEACNIGVDDWNAN-FEALEPPPF-GWTDFPVVPTSNHISCH 64
           +DE FDD+++     LE LE    GV+ W+A+  + L P P      FP VP  N     
Sbjct: 20  VDEDFDDILNFLDFPLESLEEDGQGVE-WDASESKFLGPIPMDALMAFPPVPQGN---IG 75

Query: 65  RPQVKQKPSSTDTSSSRSSYVCNKSNDGKYLLLSQTSSPISVLESGGSCSADKHVPINPK 124
             +VK +P+S             K  +G+   + QT SP+SVLES  SCS  K + I   
Sbjct: 76  NGRVKAEPNSNHPI---------KVTEGQGSGIFQTQSPVSVLESSNSCSGGKSISIKHD 126

Query: 125 LVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETASESGSEMNLTEKPVRKKQ 184
           +   V R RSKR R + LNP  + P ISST   S+    +T               RK +
Sbjct: 127 IAIPV-RPRSKRPRSSALNPWILMPPISSTRFASK----KTCD------------ARKGK 169

Query: 185 KRKKNLTVLS----GSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTLCNACGV 240
           ++K+ +++LS         KK +  Q  + +KC HC+V +TPQWREGP+GPKTLCNACGV
Sbjct: 170 EKKRKMSLLSVPQIADVTKKKTTSGQQFSFKKCTHCQVTKTPQWREGPLGPKTLCNACGV 229

Query: 241 RYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNKG 278
           RYRSGRL PEYRPAASPTFVP+LHSNSH++++EMR K 
Sbjct: 230 RYRSGRLFPEYRPAASPTFVPTLHSNSHRKVVEMRKKA 267

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647858|gb|ACU24388.1| unknown [Glycine max]

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 120/299 (40%), Positives = 169/299 (56%), Gaps = 26/299 (8%)

Query: 4   DNWIFSH-----LDEFFDDVVDT----LEDLEACNIGVDDWNANFEALEPPPFGWTDFPV 54
           D+W F +      DE FDDV++     LED+EA  +  +DW+A  + LE P         
Sbjct: 10  DSWFFDNNFNGLSDEIFDDVINFFDFPLEDVEANGV-EEDWDAQLKCLEDPRVDVYTASS 68

Query: 55  VPTSNHISCHRPQ--------------VKQKPSSTDTSSSRSSYVCNKSNDGKYLLLSQT 100
                     +PQ              +KQ   +T     ++    N +++GK L   QT
Sbjct: 69  AGLCAKTQNEKPQLGMKFSASGNGISPIKQLGKATGPVYGKTITHQNVTSNGKDLHQFQT 128

Query: 101 SSPISVLESGGSCSADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSED 160
            +   V     S S+        + V  VKRARSKR+RP++ +PLF  PFI + S   ++
Sbjct: 129 YTYSPVSVFESSSSSSVENSNFDRPVIPVKRARSKRQRPSSFSPLFSIPFILN-SPAMQN 187

Query: 161 YHPETASESGSEMNLT-EKPVRKKQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVA 219
           +    A++S    N+      + K+++KK+ ++LSG  E  + S  ++ +PRKCMHCEV 
Sbjct: 188 HQRIAAADSDFGTNVAGNLSNKLKKQKKKDSSLLSGDVEMMRSSSPESGSPRKCMHCEVT 247

Query: 220 ETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNKG 278
           +TPQWREGP+GPKTLCNACGVRYRSGRL PEYRPAASPTFV SLHSN HK+++EMR++ 
Sbjct: 248 KTPQWREGPVGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSRA 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223086|ref|NP_172279.1| GATA transcription factor 11 [Arabidopsis thaliana] gi|145323792|ref|NP_001077485.1| GATA transcription factor 11 [Arabidopsis thaliana] gi|71660879|sp|Q6DBP8.1|GAT11_ARATH RecName: Full=GATA transcription factor 11 gi|50198783|gb|AAT70425.1| At1g08010 [Arabidopsis thaliana] gi|52421283|gb|AAU45211.1| At1g08010 [Arabidopsis thaliana] gi|110738607|dbj|BAF01229.1| putative GATA transcription factor 3 [Arabidopsis thaliana] gi|225897894|dbj|BAH30279.1| hypothetical protein [Arabidopsis thaliana] gi|332190107|gb|AEE28228.1| GATA transcription factor 11 [Arabidopsis thaliana] gi|332190108|gb|AEE28229.1| GATA transcription factor 11 [Arabidopsis thaliana]

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 123/285 (43%), Positives = 162/285 (56%), Gaps = 38/285 (13%)

Query: 13  EFFDDVVD----TLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISC----- 63
           +FFDD+++     L+D++  N G  DW   F+ LEPPP     FP +P S+  SC     
Sbjct: 20  DFFDDLINHLDVPLDDIDTTN-GEGDWVDRFQDLEPPPMDM--FPTLP-SDLTSCGSGMA 75

Query: 64  ---------HRPQVKQKPSSTDTSSSRSSYVCNKSNDGKYLLLSQTSSPISVLE-SGGSC 113
                    + P +KQ  SS   SS+   +  +   + K   L Q+ SP+SVLE S GS 
Sbjct: 76  KAPRVDIQRNIPALKQSYSSEALSSTL--HQSSAPPEIKVSKLFQSLSPVSVLENSYGSL 133

Query: 114 SADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETASESGSEM 173
           S   H   + +L F VK  RSKR+RP TL   +++P        S    PE+     SE 
Sbjct: 134 ST--HNNGSQRLAFPVKGMRSKRKRPTTLRLSYLFPSEPRKPEKSTPGKPESECYFSSEQ 191

Query: 174 NLTEKPVRKKQKRKKNLTVLSGSRENKKLSFQQTD-TPRKCMHCEVAETPQWREGPMGPK 232
           +        K+KRK +LT  + S     L    +D   RKC HCE  +TPQWREGP GPK
Sbjct: 192 H-------AKKKRKIHLTTRTVS---STLEASNSDGIVRKCTHCETTKTPQWREGPSGPK 241

Query: 233 TLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
           TLCNACGVR+RSGRLVPEYRPA+SPTF+P++HSNSH++I+EMR K
Sbjct: 242 TLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRKIIEMRRK 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223085|ref|NP_172278.1| GATA transcription factor 10 [Arabidopsis thaliana] gi|42571399|ref|NP_973790.1| GATA transcription factor 10 [Arabidopsis thaliana] gi|71660878|sp|Q8VZP4.1|GAT10_ARATH RecName: Full=GATA transcription factor 10 gi|17380994|gb|AAL36309.1| putative GATA transcription factor 3 [Arabidopsis thaliana] gi|20466045|gb|AAM20357.1| putative GATA transcription factor 3 [Arabidopsis thaliana] gi|332190104|gb|AEE28225.1| GATA transcription factor 10 [Arabidopsis thaliana] gi|332190105|gb|AEE28226.1| GATA transcription factor 10 [Arabidopsis thaliana]

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/283 (40%), Positives = 161/283 (56%), Gaps = 36/283 (12%)

Query: 13  EFFDDVVD----TLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISCHR--- 65
           +FFD + +     LED+++ N G  DW A F+ LEPPP     FP +P S+  SC +   
Sbjct: 20  DFFDGLTNHLDCPLEDIDSTN-GEGDWVARFQDLEPPPLDM--FPALP-SDLTSCPKGAA 75

Query: 66  ---------PQVKQKPSSTDTSSSRSS-YVCNKSNDGKYLLLSQTSSPISVLE-SGGSCS 114
                    P +KQ  SS   S   S+ +  +   D K   L Q+ +P+SVLE S GS S
Sbjct: 76  RVRIPNNMIPALKQSCSSEALSGINSTPHQSSAPPDIKVSYLFQSLTPVSVLENSYGSLS 135

Query: 115 ADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETASESGSEMN 174
                  + +L F VK  RSKRRRP T+   +++PF    S         T  ES +E  
Sbjct: 136 TQNSG--SQRLAFPVKGMRSKRRRPTTVRLSYLFPFEPRKS---------TPGESVTEGY 184

Query: 175 LTEKPVRKKQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTL 234
            + +   +  K+K+ + +++ +  +   S +     R C HCE   TPQWR+GP GPKTL
Sbjct: 185 YSSE---QHAKKKRKIHLITHTESSTLESSKSDGIVRICTHCETITTPQWRQGPSGPKTL 241

Query: 235 CNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
           CNACGVR++SGRLVPEYRPA+SPTF+PS+HSNSH++I+EMR K
Sbjct: 242 CNACGVRFKSGRLVPEYRPASSPTFIPSVHSNSHRKIIEMRKK 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778844|gb|AAF79843.1|AC026875_23 T6D22.9 [Arabidopsis thaliana]

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/283 (40%), Positives = 161/283 (56%), Gaps = 36/283 (12%)

Query: 13  EFFDDVVDTL----EDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISCHR--- 65
           +FFD + + L    ED+++ N G  DW A F+ LEPPP     FP +P S+  SC +   
Sbjct: 533 DFFDGLTNHLDCPLEDIDSTN-GEGDWVARFQDLEPPPLDM--FPALP-SDLTSCPKGAA 588

Query: 66  ---------PQVKQKPSSTDTSSSRSS-YVCNKSNDGKYLLLSQTSSPISVLE-SGGSCS 114
                    P +KQ  SS   S   S+ +  +   D K   L Q+ +P+SVLE S GS S
Sbjct: 589 RVRIPNNMIPALKQSCSSEALSGINSTPHQSSAPPDIKVSYLFQSLTPVSVLENSYGSLS 648

Query: 115 ADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETASESGSEMN 174
                  + +L F VK  RSKRRRP T+   +++PF    S         T  ES +E  
Sbjct: 649 TQNSG--SQRLAFPVKGMRSKRRRPTTVRLSYLFPFEPRKS---------TPGESVTEGY 697

Query: 175 LTEKPVRKKQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTL 234
            + +   +  K+K+ + +++ +  +   S +     R C HCE   TPQWR+GP GPKTL
Sbjct: 698 YSSE---QHAKKKRKIHLITHTESSTLESSKSDGIVRICTHCETITTPQWRQGPSGPKTL 754

Query: 235 CNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
           CNACGVR++SGRLVPEYRPA+SPTF+PS+HSNSH++I+EMR K
Sbjct: 755 CNACGVRFKSGRLVPEYRPASSPTFIPSVHSNSHRKIIEMRKK 797

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550206|ref|XP_003543479.1| PREDICTED: GATA transcription factor 11-like [Glycine max]

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/299 (39%), Positives = 168/299 (56%), Gaps = 26/299 (8%)

Query: 4   DNWIFSH-----LDEFFDDVVDT----LEDLEACNIGVDDWNANFEALEPPPFGWTDFPV 54
           D+W F +      DE FDDV++     LED+EA  +  +DW+A  + LE P         
Sbjct: 10  DSWFFDNNFNGLSDEIFDDVINFFDFPLEDVEANGV-EEDWDAQLKCLEDPRVDVYTASS 68

Query: 55  VPTSNHISCHRPQ--------------VKQKPSSTDTSSSRSSYVCNKSNDGKYLLLSQT 100
                     +PQ              +KQ   +T     ++    N +++GK L   QT
Sbjct: 69  AGLCAKTQNEKPQLGMKFSASGNGISPIKQLGKATGPVYGKTITHQNVTSNGKDLHQFQT 128

Query: 101 SSPISVLESGGSCSADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSED 160
            +   V     S S+        + V  VKRARSKR+RP++ +PLF  PFI + S   ++
Sbjct: 129 YTYSPVSVFESSSSSSVENSNFDRPVIPVKRARSKRQRPSSFSPLFSIPFILN-SPAMQN 187

Query: 161 YHPETASESGSEMNLT-EKPVRKKQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVA 219
           +    A++S    N+      + K+++KK+ ++LS   E  + S  ++ +PRKCMHCEV 
Sbjct: 188 HQRIAAADSDFGTNVAGNLSNKLKKQKKKDSSLLSDDVEMMRSSSPESGSPRKCMHCEVT 247

Query: 220 ETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNKG 278
           +TPQWREGP+GPKTLCNACGVRYRSGRL PEYRPAASPTFV SLHSN HK+++EMR++ 
Sbjct: 248 KTPQWREGPVGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSRA 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849094|ref|XP_002892428.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297338270|gb|EFH68687.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/283 (43%), Positives = 163/283 (57%), Gaps = 34/283 (12%)

Query: 13  EFFDDVVD----TLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISCHR--- 65
           +FFDD+++     LED+++ N+   DW A F+ LEPPP     FP +P S  ISC     
Sbjct: 20  DFFDDLINHLDCPLEDIDSTNVE-GDWVARFQDLEPPPMDM--FPSLP-SELISCATGGR 75

Query: 66  --------PQVKQKPSSTDTSSSRSS-YVCNKSNDGKYLLLSQTSSPISVLE-SGGSCSA 115
                   P  KQ  SS   SS  ++ +  +   D K   L Q+ SP+SVLE S GS S 
Sbjct: 76  LGIQRNMIPAFKQSCSSEALSSIDTTLHQSSAPPDIKVSKLFQSLSPVSVLENSYGSLST 135

Query: 116 DKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETASESGSEMNL 175
                 + +L F VK  RSKR+RP TL   +++P        SE   PE ++ + SE   
Sbjct: 136 QNSG--SQRLAFPVKGMRSKRKRPTTLRLSYLFP--------SEPRKPEKSTPAESESES 185

Query: 176 TEKPVR-KKQKRKKNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTL 234
                +  K+KRK +LT  + +  +   +       RKC HCE  +TPQWREGP G KTL
Sbjct: 186 YYSSEQHAKKKRKIHLT--TRTVSSSSEASNSDGIVRKCTHCETTKTPQWREGPKGRKTL 243

Query: 235 CNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
           CNACGVR+RSGRLVPEYRPA+SPTF+PS+HSNSH++I+EMR K
Sbjct: 244 CNACGVRFRSGRLVPEYRPASSPTFIPSVHSNSHRKIVEMRRK 286

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
TAIR|locus:2205100	303	GATA11 "GATA transcription fac	0.892	0.825	0.393	3.2e-42
TAIR|locus:2205090	308	GATA10 "GATA transcription fac	0.882	0.801	0.388	9.6e-41
TAIR|locus:2082637	322	BME3 "BLUE MICROPYLAR END 3" [	0.628	0.546	0.453	4.1e-33
TAIR|locus:2123738	308	GATA9 "GATA transcription fact	0.239	0.217	0.731	5.3e-30
TAIR|locus:2145259	331	GATA12 "GATA transcription fac	0.625	0.528	0.413	1.9e-28
TAIR|locus:2076191	274	GATA1 "GATA transcription fact	0.239	0.244	0.746	4.1e-28
TAIR|locus:2055589	264	GATA2 "GATA transcription fact	0.239	0.253	0.701	1.4e-27
TAIR|locus:2155056	339	GATA5 "GATA transcription fact	0.503	0.415	0.445	1.5e-26
TAIR|locus:2103346	240	GATA4 "GATA transcription fact	0.25	0.291	0.7	5.2e-26
TAIR|locus:2080828	312	GATA6 "GATA transcription fact	0.253	0.227	0.694	5.9e-25

TAIR|locus:2205100 GATA11 "GATA transcription factor 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 111/282 (39%), Positives = 151/282 (53%)

Query:    13 EFFDDVVD----TLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISC----- 63
             +FFDD+++     L+D++  N G  DW   F+ LEPPP     FP +P S+  SC     
Sbjct:    20 DFFDDLINHLDVPLDDIDTTN-GEGDWVDRFQDLEPPPMDM--FPTLP-SDLTSCGSGMA 75

Query:    64 HRPQVK-Q------KPXXXXXXXXXXXYVCNKSNDGKYLLLSQTSSPISVLESG-GSCSA 115
               P+V  Q      K            +  +   + K   L Q+ SP+SVLE+  GS S 
Sbjct:    76 KAPRVDIQRNIPALKQSYSSEALSSTLHQSSAPPEIKVSKLFQSLSPVSVLENSYGSLST 135

Query:   116 DKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETASESGSEMNL 175
               H   + +L F VK  RSKR+RP TL   +++P        S    PE+     SE + 
Sbjct:   136 --HNNGSQRLAFPVKGMRSKRKRPTTLRLSYLFPSEPRKPEKSTPGKPESECYFSSEQHA 193

Query:   176 TEXXXXXXXXXXXNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTLC 235
              +           + T+ + + +            RKC HCE  +TPQWREGP GPKTLC
Sbjct:   194 KKKRKIHLTTRTVSSTLEASNSDG---------IVRKCTHCETTKTPQWREGPSGPKTLC 244

Query:   236 NACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
             NACGVR+RSGRLVPEYRPA+SPTF+P++HSNSH++I+EMR K
Sbjct:   245 NACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRKIIEMRRK 286

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2205090 GATA10 "GATA transcription factor 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 110/283 (38%), Positives = 148/283 (52%)

Query:    13 EFFDDVVD----TLEDLEACNIGVDDWNANFEALEPPPFGWTDFPVVPTSNHISCHR--- 65
             +FFD + +     LED+++ N G  DW A F+ LEPPP     FP +P S+  SC +   
Sbjct:    20 DFFDGLTNHLDCPLEDIDSTN-GEGDWVARFQDLEPPPLDM--FPALP-SDLTSCPKGAA 75

Query:    66 ---------PQVKQKPXXXXXXXXXXX-YVCNKSNDGKYLLLSQTSSPISVLESG-GSCS 114
                      P +KQ              +  +   D K   L Q+ +P+SVLE+  GS S
Sbjct:    76 RVRIPNNMIPALKQSCSSEALSGINSTPHQSSAPPDIKVSYLFQSLTPVSVLENSYGSLS 135

Query:   115 ADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETASESGSEMN 174
                    + +L F VK  RSKRRRP T+   +++PF    S+  E     T     SE +
Sbjct:   136 TQNSG--SQRLAFPVKGMRSKRRRPTTVRLSYLFPFEPRKSTPGESV---TEGYYSSEQH 190

Query:   175 LTEXXXXXXXXXXXNLTVLSGSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTL 234
               +           + T+ S   +            R C HCE   TPQWR+GP GPKTL
Sbjct:   191 AKKKRKIHLITHTESSTLESSKSDG---------IVRICTHCETITTPQWRQGPSGPKTL 241

Query:   235 CNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
             CNACGVR++SGRLVPEYRPA+SPTF+PS+HSNSH++I+EMR K
Sbjct:   242 CNACGVRFKSGRLVPEYRPASSPTFIPSVHSNSHRKIIEMRKK 284

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2082637 BME3 "BLUE MICROPYLAR END 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 83/183 (45%), Positives = 103/183 (56%)

Query:    99 QTSSPISVLESGGSCSADKHVPINPKLVFAVK--RARSKRRRPATLNPLFIYPFISSTSS 156
             ++SSP+SVLES  S S   +      LV   K  R R+KR RP   +   +   +    S
Sbjct:   116 RSSSPVSVLESSSSSSQTTNTT---SLVLPGKHGRPRTKRPRPPVQDKDRVKDNVCGGDS 172

Query:   157 TSEDYHPET-ASESGSEMNLTEXXXXXXXXXXXNLTVLSGSRENKKLSFQQTDTP-RKCM 214
                   P+   S+    +N  +           +  +      N   S+     P RKCM
Sbjct:   173 RLIIRIPKQFLSDHNKMINKKKKKKAKITSSSSSSGIDLEVNGNNVDSYSSEQYPLRKCM 232

Query:   215 HCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEM 274
             HCEV +TPQWR GPMGPKTLCNACGVRY+SGRL PEYRPAASPTF P+LHSNSHK++ EM
Sbjct:   233 HCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKKVAEM 292

Query:   275 RNK 277
             RNK
Sbjct:   293 RNK 295

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2123738 GATA9 "GATA transcription factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
 Identities = 49/67 (73%), Positives = 60/67 (89%)

Query:   211 RKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKR 270
             R+C+HC   +TPQWR GPMGPKTLCNACGVRY+SGRLVPEYRPA+SPTFV + HSNSH++
Sbjct:   197 RRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRK 256

Query:   271 IMEMRNK 277
             +ME+R +
Sbjct:   257 VMELRRQ 263

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2145259 GATA12 "GATA transcription factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 74/179 (41%), Positives = 96/179 (53%)

Query:   101 SSPISVLESGGSCSADKHVPINPKLVFAVKRARSKRRRPATLNPLFIYPFISSTSSTSED 160
             S P    ++G   + +   PI    V    +ARSKR R A  N       +  T   S  
Sbjct:   109 SRPDPKSDTGSPENPNSSSPIFTTDVSVPAKARSKRSRAAACN-WASRGLLKETFYDSP- 166

Query:   161 YHPETASESGSEMNLTEXXXXXXXXXXXNLTVLSGSRENKKLSFQQTD--TPRKCMHCEV 218
             +  ET   S   ++                 V  G R  K +S  ++     R+C+HC  
Sbjct:   167 FTGETILSSQQHLSPPTSPPLLMAPLGKKQAVDGGHRRKKDVSSPESGGAEERRCLHCAT 226

Query:   219 AETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
              +TPQWR GPMGPKTLCNACGVRY+SGRLVPEYRPAASPTFV + HSNSH+++ME+R +
Sbjct:   227 DKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQ 285

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2076191 GATA1 "GATA transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
 Identities = 50/67 (74%), Positives = 56/67 (83%)

Query:   211 RKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKR 270
             RKC HC   +TPQWR GP GPKTLCNACGVRY+SGRLVPEYRPA SPTF   LHSNSH++
Sbjct:   194 RKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRK 253

Query:   271 IMEMRNK 277
             I+EMR +
Sbjct:   254 IVEMRKQ 260

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2055589 GATA2 "GATA transcription factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 47/67 (70%), Positives = 59/67 (88%)

Query:   211 RKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNSHKR 270
             R+C HC   +TPQWR GP+GPKTLCNACGVR++SGRLVPEYRPA+SPTFV + HSNSH++
Sbjct:   179 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRK 238

Query:   271 IMEMRNK 277
             +ME+R +
Sbjct:   239 VMELRRQ 245

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2155056 GATA5 "GATA transcription factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 69/155 (44%), Positives = 85/155 (54%)

Query:   131 RARSKRRRPATLNPLFIYPFISSTSSTSEDYHPETASESGSEMNLTEXXXXXXXXXXXNL 190
             +ARSKR R    N L ++   SS+SS        ++S SG                    
Sbjct:   167 KARSKRNR----NGLKVWSLGSSSSSGPSSSGSTSSSSSGPSSPWFSGAELLEPVVTSER 222

Query:   191 TVLSGSRENKKLS--------FQQTDTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRY 242
                   +++KK S         QQ    RKC HC V +TPQWR GPMG KTLCNACGVRY
Sbjct:   223 PPFP--KKHKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRY 280

Query:   243 RSGRLVPEYRPAASPTFVPSLHSNSHKRIMEMRNK 277
             +SGRL+PEYRPA SPTF   LHSN H++++EMR K
Sbjct:   281 KSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRK 315

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2103346 GATA4 "GATA transcription factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 49/70 (70%), Positives = 60/70 (85%)

Query:   208 DTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHSNS 267
             D  R+C HC   +TPQWR GP+GPKTLCNACGVRY+SGRLVPEYRPA+SPTFV + HSNS
Sbjct:   155 DGARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNS 214

Query:   268 HKRIMEMRNK 277
             H+++ME+R +
Sbjct:   215 HRKVMELRRQ 224

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2080828 GATA6 "GATA transcription factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 50/72 (69%), Positives = 58/72 (80%)

Query:   206 QTDTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHS 265
             QT T R+C HC V +TPQWR GP+G KTLCNACGVRY+SGRL+PEYRPA SPTF   LHS
Sbjct:   217 QTQT-RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHS 275

Query:   266 NSHKRIMEMRNK 277
             N H +++EMR K
Sbjct:   276 NHHSKVIEMRRK 287

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DBP8	GAT11_ARATH	No assigned EC number	0.4315	0.8821	0.8151	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	280
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	1e-13
pfam00320	36	pfam00320, GATA, GATA zinc finger	9e-13
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	5e-12

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 210 PRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTFVP 261
            R C +C   ETP WR GP G KTLCNACG+ Y+    +   RP +      
Sbjct: 3   GRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLK--RPLSLKKDGI 52

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 60.8 bits (148), Expect = 9e-13
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 213 CMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLV 248
           C +C   +TP WR GP G +TLCNACG+ YR   L 
Sbjct: 1   CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 59.3 bits (144), Expect = 5e-12
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 212 KCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPTF 259
            C +C    TP WR GP G  TLCNACG+ ++        RP +    
Sbjct: 1   ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRKK 45

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.52
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.5
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.45
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	99.2
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	97.77
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	94.14

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.52  E-value=9.8e-15  Score=106.21  Aligned_cols=44  Identities=41%  Similarity=0.939  Sum_probs=38.1

Q ss_pred             ccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCCCCCCCCCCCCC
Q 023588          212 KCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAASPT  258 (280)
Q Consensus       212 ~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~~p~yrpa~spt  258 (280)
                      .|+||+++.||+||+||+|..+|||||||+|++++   ..+|...+.
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~---~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRK   44 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC---CCCCcccCc
Confidence            59999999999999999999999999999999976   455655443

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.50  E-value=1.1e-14  Score=104.85  Aligned_cols=40  Identities=50%  Similarity=1.068  Sum_probs=36.3

Q ss_pred             CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCCC
Q 023588          209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLV  248 (280)
Q Consensus       209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~~  248 (280)
                      ..+.|.||+++.||+||+||.|..+|||||||+|++.+.+
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~   41 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGL   41 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCC
Confidence            3578999999999999999999889999999999996554

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.45  E-value=1e-14  Score=98.07  Aligned_cols=35  Identities=54%  Similarity=1.184  Sum_probs=28.3

Q ss_pred             cCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCC
Q 023588          213 CMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRL  247 (280)
Q Consensus       213 C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~  247 (280)
                      |.||++++||+||+||.|..+||||||++|++++.
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            89999999999999999988999999999999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=99.20  E-value=1.5e-11  Score=102.53  Aligned_cols=70  Identities=57%  Similarity=1.131  Sum_probs=61.3

Q ss_pred             CCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhC---CCCCCCCCCCCCC--------------cccccccc------
Q 023588          210 PRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSG---RLVPEYRPAASPT--------------FVPSLHSN------  266 (280)
Q Consensus       210 ~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~---r~~p~yrpa~spt--------------f~p~~~s~------  266 (280)
                      ...|.+|+++.||+||+++.|.+.+|||||++|+++   +.++.++.+..++              +....|.+      
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRPASSPRNVSPKGSGAVKGRTFTKSLHSNSAQLLL  278 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcCccccccccCccccccccCCCccccccCCCCCcccccchhhhhh
Confidence            579999999999999999999999999999999998   7788888888777              56666666      


Q ss_pred             -----------chHHHHHhhhcCC
Q 023588          267 -----------SHKRIMEMRNKGR  279 (280)
Q Consensus       267 -----------~h~kv~~~r~k~~  279 (280)
                                 .|.++.++++..+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~r~~~  302 (340)
T KOG1601|consen  279 APSKSEPPLLSSHQRVAEVRRYRE  302 (340)
T ss_pred             hhcccCccccccchHHHHHhhccC
Confidence                       8899999887654

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=97.77  E-value=9.2e-06  Score=81.58  Aligned_cols=54  Identities=28%  Similarity=0.557  Sum_probs=41.4

Q ss_pred             CCccCcCCCCCCCCcCCCCCC----ChhHhHHhhhHHhhCCCCCCCCCCCCCCccccccc
Q 023588          210 PRKCMHCEVAETPQWREGPMG----PKTLCNACGVRYRSGRLVPEYRPAASPTFVPSLHS  265 (280)
Q Consensus       210 ~~~C~~Cgvt~TP~WR~GP~G----~~tLCNACGL~~kk~r~~p~yrpa~sptf~p~~~s  265 (280)
                      ..+|.+|.++.||+|||+..+    .-.|||||||+|+-.+..-+  |...++.+.+-|.
T Consensus       158 ~~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r~--P~t~ks~~~ks~~  215 (498)
T COG5641         158 PHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPRA--PISLKSDSIKSRS  215 (498)
T ss_pred             cchhccccccCCccccccccccccCCccccccccccccccCCcCC--Ccccccccccccc
Confidence            348999999999999999994    37999999999998766543  5555555444333

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=94.14  E-value=0.094  Score=53.78  Aligned_cols=37  Identities=24%  Similarity=0.602  Sum_probs=31.9

Q ss_pred             CCCCccCcCCCCCCCCc--CCCCCCChhHhHHhhhHHhh
Q 023588          208 DTPRKCMHCEVAETPQW--REGPMGPKTLCNACGVRYRS  244 (280)
Q Consensus       208 ~~~~~C~~Cgvt~TP~W--R~GP~G~~tLCNACGL~~kk  244 (280)
                      ..++.|.+|+++..-+|  +-+|+-...||-.|.++|+|
T Consensus       384 ~~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKK  422 (693)
T KOG3554|consen  384 QDGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKK  422 (693)
T ss_pred             CCCCcccccccccccceeccCCCCccchhhHHHHHHHHH
Confidence            34679999999999999  55666667899999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	280
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	6e-13
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	6e-10
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	1e-08
3dfx_A	63	Trans-acting T-cell-specific transcription factor	4e-06
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	4e-06

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 61.8 bits (150), Expect = 6e-13
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 195 GSRENKKLSFQQTDTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPA 254
           GS  NKK          +C +C V ET +WR         CNAC +     R   + RP 
Sbjct: 1   GSHMNKK--------SFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQ---RKYNKTRPV 49

Query: 255 A 255
            
Sbjct: 50  T 50

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 52.8 bits (127), Expect = 6e-10
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYR 243
             R+C++C    TP WR    G   LCNACG+ ++
Sbjct: 3   EARECVNCGATATPLWRRDRTG-HYLCNACGLYHK 36

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 49.4 bits (118), Expect = 1e-08
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 210 PRKCMHCEVAETPQWREGPMGPKTLCNACGVRYR 243
           P  C +C    TP WR  P G + LCNACG+  +
Sbjct: 1   PTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK 33

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYR 243
               C +C+   T  WR    G   +CNACG+ Y+
Sbjct: 6   AGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYK 39

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYR 243
            P  C +C    TP WR  P G + LCNACG+  +
Sbjct: 8   GPTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	280
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.6
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.58
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.57
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.52
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.5
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.32
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.15

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.60  E-value=3.2e-16  Score=116.88  Aligned_cols=40  Identities=30%  Similarity=0.805  Sum_probs=36.5

Q ss_pred             CCCCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCC
Q 023588          207 TDTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRL  247 (280)
Q Consensus       207 ~~~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~  247 (280)
                      ......|.||+++.||+||+||+|. +|||||||+|++++.
T Consensus         4 ~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~   43 (63)
T 3dfx_A            4 RRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI   43 (63)
T ss_dssp             CCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS
T ss_pred             CCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC
Confidence            4566789999999999999999997 999999999999765

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.58  E-value=4.1e-16  Score=108.49  Aligned_cols=37  Identities=41%  Similarity=0.913  Sum_probs=34.0

Q ss_pred             CccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCCC
Q 023588          211 RKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLV  248 (280)
Q Consensus       211 ~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~~  248 (280)
                      +.|++|+++.||+||+||+|. +|||||||+|++++..
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~   38 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV   38 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence            579999999999999999996 9999999999997653

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.57  E-value=9.9e-16  Score=107.96  Aligned_cols=39  Identities=36%  Similarity=0.823  Sum_probs=35.2

Q ss_pred             CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCCC
Q 023588          209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLV  248 (280)
Q Consensus       209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~~  248 (280)
                      ....|.+|++++||+||+||+|. +|||||||+|++++..
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~   41 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN   41 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC
Confidence            45689999999999999999996 9999999999997653

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.52  E-value=2.4e-15  Score=112.91  Aligned_cols=39  Identities=38%  Similarity=0.911  Sum_probs=35.6

Q ss_pred             CCCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCC
Q 023588          208 DTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRL  247 (280)
Q Consensus       208 ~~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~  247 (280)
                      +....|+||++++||+||+||+|. +|||||||+|++++.
T Consensus         7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~   45 (66)
T 4gat_A            7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV   45 (66)
T ss_dssp             SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC
Confidence            567899999999999999999996 999999999998655

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.50  E-value=4.4e-15  Score=113.01  Aligned_cols=43  Identities=28%  Similarity=0.487  Sum_probs=32.9

Q ss_pred             CCCCCCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCC
Q 023588          205 QQTDTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRL  247 (280)
Q Consensus       205 ~~~~~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~  247 (280)
                      .+......|+||+++.||+||+|+.+..+|||||||+|++++.
T Consensus         3 ~~~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~   45 (71)
T 2kae_A            3 HMNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNK   45 (71)
T ss_dssp             -----CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHS
T ss_pred             CCCCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCC
Confidence            3456678999999999999999654445999999999999654

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.32  E-value=5.3e-13  Score=108.80  Aligned_cols=40  Identities=30%  Similarity=0.815  Sum_probs=36.4

Q ss_pred             CCCCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCC
Q 023588          207 TDTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRL  247 (280)
Q Consensus       207 ~~~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~  247 (280)
                      ......|+||+++.||+||+||+| ++|||||||||++++.
T Consensus        56 ~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~   95 (115)
T 4hc9_A           56 RRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNI   95 (115)
T ss_dssp             CCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred             ccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCC
Confidence            455689999999999999999999 8999999999999655

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.15  E-value=1.4e-11  Score=100.37  Aligned_cols=37  Identities=38%  Similarity=0.891  Sum_probs=32.5

Q ss_pred             CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCC
Q 023588          209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGR  246 (280)
Q Consensus       209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r  246 (280)
                      ..+.|.||+++.||+||+|++| .+|||||||+|+..+
T Consensus         4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G   40 (115)
T 4hc9_A            4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNG   40 (115)
T ss_dssp             --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHS
T ss_pred             CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcc
Confidence            4578999999999999999999 799999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	280
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	3e-12
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	5e-09
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	5e-07

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (139), Expect = 3e-12
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 210 PRKCMHCEVAETPQWREGPMGPKTLCNACGVRYR 243
            R+C++C    TP WR    G   LCNACG+ ++
Sbjct: 2   ARECVNCGATATPLWRRDRTG-HYLCNACGLYHK 34

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 49.0 bits (117), Expect = 5e-09
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 213 CMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYRPAA 255
           C +C    TP WR  P G + LCNACG+     +L    RP +
Sbjct: 3   CTNCFTQTTPLWRRNPEG-QPLCNACGLFL---KLHGVVRPLS 41

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.8 bits (103), Expect = 5e-07
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGR 246
               C +C+ + T  WR  PMG   +CNACG+ Y+  +
Sbjct: 3   AGTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQ 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	280
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.63
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.61
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.52

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2.4e-17  Score=111.56  Aligned_cols=36  Identities=39%  Similarity=0.943  Sum_probs=33.4

Q ss_pred             CCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCC
Q 023588          210 PRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGR  246 (280)
Q Consensus       210 ~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r  246 (280)
                      .+.|.||++++||+||+||+| ++|||||||+|+.++
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~G   37 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNG   37 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHSC
T ss_pred             cCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHhC
Confidence            468999999999999999999 689999999999864

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.61  E-value=8.4e-17  Score=110.39  Aligned_cols=35  Identities=40%  Similarity=0.951  Sum_probs=32.3

Q ss_pred             ccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCC
Q 023588          212 KCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRL  247 (280)
Q Consensus       212 ~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~  247 (280)
                      .|+||++++||+||+||+| ++|||||||||+.++.
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~g~   36 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGV   36 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHHHHSS
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHHHcCC
Confidence            5999999999999999999 7999999999988544

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.52  E-value=1.1e-15  Score=113.22  Aligned_cols=38  Identities=37%  Similarity=0.967  Sum_probs=34.3

Q ss_pred             CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCC
Q 023588          209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRL  247 (280)
Q Consensus       209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~  247 (280)
                      ....|.||+++.||+||+||+| .+|||||||||++++.
T Consensus         3 ~g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~~   40 (66)
T d3gata_           3 AGTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV   40 (66)
T ss_dssp             TTCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhCC
Confidence            3457999999999999999999 7999999999998654