Citrus Sinensis ID: 023645

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Secondary Structure (PSIPRED)
ccccccccccHHHHccccccccccccccccHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccEEEEEccHHcHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHEEEEEEEcccEEcccccccccccccEcccccEEcEcccccccEEEEccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHEEEEccccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHHccccEEEEEccccccEEcccccccHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEcc
Coil and Loop (DISEMBL)
MASSLVANRFAFVLLKTEKTVAkfhsfplserlrlrpckfktknqfttnccvssahdekysnkqvisvtpplydyiLRNVREPEILRQLREEtagmrgsqmqvsPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVlpesgclvaCERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILngeassydfaFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKnlmedervsismvpigdgmticqkr
Flexible Loop (DISEMBL)
MASSLVANRFAFVLlktektvakfhsfplserlrlrpckfktknqfttnccvssahdekysnkqvisvtppLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYyeragvshkvkiKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNfnknlmedervsismvpigdgmticqkr
Low Complexity Region (SEG)
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Disordered region (IsUnstruct)
****LVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEIL*********************AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGM******
Disordered Region (DISOPRED)
*********FAFVLLKTEKTVAKFHSFPLSERLR***********************************PPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Disordered Region (DISEMBL)
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREET***********PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Disordered Region (DISPRO)
*ASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q9XGP7	252	Tricin synthase 1 OS=Oryz	no	no	0.813	0.900	0.429	9e-46
Q9C5D7	232	Probable caffeoyl-CoA O-m	no	no	0.731	0.879	0.433	2e-41
Q00719	221	O-methyltransferase MdmC	N/A	no	0.759	0.959	0.379	6e-41
Q9XGD5	264	Caffeoyl-CoA O-methyltran	N/A	no	0.734	0.776	0.429	3e-40
Q9C9W3	232	Putative caffeoyl-CoA O-m	no	no	0.691	0.831	0.427	9e-39
Q86IC9	230	Probable caffeoyl-CoA O-m	yes	no	0.637	0.773	0.430	1e-38
P28034	241	Caffeoyl-CoA O-methyltran	N/A	no	0.738	0.854	0.389	1e-38
Q86IC8	231	Probable caffeoyl-CoA O-m	yes	no	0.637	0.770	0.430	1e-38
Q9C9W4	233	Tapetum-specific methyltr	no	no	0.777	0.931	0.391	2e-38
Q43237	242	Caffeoyl-CoA O-methyltran	no	no	0.734	0.847	0.410	2e-38

>sp|Q9XGP7|OMT15_ORYSJ Tricin synthase 1 OS=Oryza sativa subsp. japonica GN=ROMT-15 PE=1 SV=1

 Score =  183 bits (465), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 103/240 (42%), Positives = 146/240 (60%), Gaps = 13/240 (5%)

Query: 52  VSSAHDEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQA 108
           + +AH +  S  + +  +  LY Y+L      REPE +R LR  T   +   MQ S D+A
Sbjct: 11  IKNAHSDIDSTNKTLLKSDALYKYVLDTTVLPREPECMRDLRLITDKHQWGFMQSSADEA 70

Query: 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG 168
           QLL ML+++ GA+R IEVGV+TGYS LA AL LPE G +VA + D  S E+ + + E+AG
Sbjct: 71  QLLGMLLKMAGAKRTIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIGRPFLEKAG 130

Query: 169 VSHKVKIKHGLAADSLKALI----LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI 224
           V+HKV  + G   + L  L+      G  +++DFAFVDA+K  Y +Y E LLQL+RVGG 
Sbjct: 131 VAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFVDADKPNYVKYHEQLLQLVRVGGH 190

Query: 225 IVIDNVLWHGKVA---DQMVNDAK---TISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
           IV DN LW G VA   D  ++D     +++IR+ N  L  D R+ +  + I DG+TIC++
Sbjct: 191 IVYDNTLWAGTVALPPDTPLSDLDRRFSVAIRDLNSRLAADPRIDVCQLAIADGITICRR 250

Catalyzes the stepwise methylation of tricetin to its 3'-mono- and 3',5'-dimethyl ethers. No 3',4',5'-trimethylated ester derivatives are produced. Can use caffeoyl-CoA, 5-hydroxyferulic acid, luteolin, tricetin, quercetin, myrcetin and 7,8-dihydroxyflavone as substrates, but not naringenin, apigenin or kaempferol. The 2,3-double bond and the O-dihydroxyl group of the substrate are both required for catalytic activity of the enzyme.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7EC: 5

>sp|Q9C5D7|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/219 (43%), Positives = 128/219 (58%), Gaps = 15/219 (6%)

Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE+LR+LR  T     + M  +PD  QL+ ML+ ++ A++ IEVGV
Sbjct: 15  LYKYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVNARKTIEVGV 74

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           +TGYS L  AL LPE G ++A + +  S E+     ++AGV HK+  K   A  +L  L+
Sbjct: 75  FTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEALPALDELL 134

Query: 189 LNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI 247
            N      +DFAFVDA+K  Y  Y E L++LI+VGGIIV DN LW G VA+    D+ T 
Sbjct: 135 NNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEP---DSSTP 191

Query: 248 SIR--------NFNKNLMEDERVSISMVPIGDGMTICQK 278
             R          NK L  D+RV IS   +GDG+TIC++
Sbjct: 192 EWRIEVKKATLELNKKLSADQRVQISQAALGDGITICRR 230

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q00719|MDMC_STRMY O-methyltransferase MdmC OS=Streptomyces mycarofaciens GN=mdmC PE=3 SV=1

 Score =  167 bits (424), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 138/216 (63%), Gaps = 4/216 (1%)

Query: 67  SVTPPLYDYILRNV--REPEILRQLREETAGMRGSQ-MQVSPDQAQLLAMLVQILGAQRC 123
           +++P L DY  R+V  RE  +LR+L + TA + G + MQ+ P++AQ L +L++++GA+R 
Sbjct: 6   TLSPALLDYA-RSVALREDGLLRELHDMTAQLPGGRAMQIMPEEAQFLGLLIRLVGARRV 64

Query: 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183
           +E+G +TGYS+L +A  LP  G +V C+   +   +   +++RAGV   + ++ G AA +
Sbjct: 65  LEIGTFTGYSTLCMARALPAGGRIVTCDISDKWPGIGAPFWQRAGVDGLIDLRIGDAART 124

Query: 184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVND 243
           L  L       ++D  FVDA+K  Y  Y+E  L L+R GG++ IDN L+ G+VAD   +D
Sbjct: 125 LAELRERDGDGAFDLVFVDADKAGYLHYYEQALALVRPGGLVAIDNTLFFGRVADPAADD 184

Query: 244 AKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
             T+++R  N  L +DERV I+++ + DG+T+ ++R
Sbjct: 185 PDTVAVRTLNDLLRDDERVDIALLTVADGITLARRR 220

4-O-methyltransferase for the lactone ring of midecamycin and other macrolide antibiotics.

Streptomyces mycarofaciens (taxid: 1949)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9XGD5|CAMT2_MAIZE Caffeoyl-CoA O-methyltransferase 2 OS=Zea mays GN=CCOAOMT2 PE=2 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/219 (42%), Positives = 134/219 (61%), Gaps = 14/219 (6%)

Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++GA++ +E+GV
Sbjct: 46  LYQYILDTSVYPREPESMKELREITAKHPWNLMTTSADEGQFLNMLIKLIGAKKTMEIGV 105

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL LPE G ++A + +  + E+      +AGV HK+  + G A   L  L+
Sbjct: 106 YTGYSLLATALALPEDGTILAMDINRENYELGLPCINKAGVGHKIDFREGPALPVLDDLV 165

Query: 189 LNGEA-SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA--- 244
            + E   S+DFAFVDA+K  Y  Y E LL+L+R GG+I  DN LW+G V   + +DA   
Sbjct: 166 ADKEQHGSFDFAFVDADKDNYLNYHERLLKLVRPGGLIGYDNTLWNGSVV--LPDDAPMR 223

Query: 245 KTISI-RNF----NKNLMEDERVSISMVPIGDGMTICQK 278
           K I   R+F    N  L  D+RV I  +P+GDG+T+C++
Sbjct: 224 KYIRFYRDFVLALNSALAADDRVEICQLPVGDGVTLCRR 262

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W3|CAMT1_ARATH Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1

 Score =  160 bits (405), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/208 (42%), Positives = 126/208 (60%), Gaps = 15/208 (7%)

Query: 81  REPEILRQLREETAGMRG--SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIA 138
           RE E+L++LR+ T    G  S+M+V  D+   L+MLV+I+ A+  IE+GV+TGYS L  A
Sbjct: 28  REHELLKELRKATVQKYGNLSEMEVPVDEGHFLSMLVKIMNAKNTIEIGVFTGYSLLTTA 87

Query: 139 LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI-LNGEASSYD 197
           L LPE G + A + D  + EV  ++ ++AGV HK+   H   +D LKAL  L  +   +D
Sbjct: 88  LALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIH---SDGLKALDQLVNDKCEFD 144

Query: 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIR------- 250
           FAF DA+K  Y  + E LL+L++VGGII  DN LW G VA+    D     +R       
Sbjct: 145 FAFADADKSSYVNFHERLLKLVKVGGIIAFDNTLWFGFVAED--EDGVPEHMREYRAALI 202

Query: 251 NFNKNLMEDERVSISMVPIGDGMTICQK 278
            FNK L  D RV +S + IGDG+T+C++
Sbjct: 203 EFNKKLALDPRVEVSQISIGDGITLCRR 230

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q86IC9|CAMT1_DICDI Probable caffeoyl-CoA O-methyltransferase 1 OS=Dictyostelium discoideum GN=omt5 PE=3 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 117/179 (65%), Gaps = 1/179 (0%)

Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M    +Q     +L+Q+L A++ I++GV+TG SSL  AL + + G +VAC+      + A
Sbjct: 50  MLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTDYTQHA 109

Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIR 220
            K++ +AGV HK+ +K   A+ +L+ LI  GE ++YDF F+DA+K  Y  Y+EL L+LIR
Sbjct: 110 LKFWAKAGVDHKINLKIQPASKTLQELIDQGEENTYDFVFIDADKTGYDTYYELSLKLIR 169

Query: 221 VGGIIVIDNVLWHGKVADQMVN-DAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
            GGII IDNVL HG+VAD   N +   ++IR  N  ++ D+RV+ +M+PI DG+T+  K
Sbjct: 170 KGGIIAIDNVLQHGRVADPNANVEPNLVAIRALNDKILADKRVTKTMLPIADGITLVTK 228

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|P28034|CAMT_PETCR Caffeoyl-CoA O-methyltransferase OS=Petroselinum crispum PE=1 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/218 (38%), Positives = 131/218 (60%), Gaps = 12/218 (5%)

Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++ A+  +E+GV
Sbjct: 23  LYQYILETSVYPREPEAMKELREVTAKHPWNLMTTSADEGQFLNMLLKLINAKNTMEIGV 82

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL LP+ G ++A + +  + E+     E+AGV HK+  + G A   L  ++
Sbjct: 83  YTGYSLLATALALPDDGKILAMDINRENYEIGLPIIEKAGVGHKIDFREGPALPVLDHML 142

Query: 189 LNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI 247
            +G+   ++DF FVDA+K  Y  Y + L+ L+++GG+I  DN LW+G VA Q  +     
Sbjct: 143 EDGKYHGTFDFVFVDADKDNYINYHKRLIDLVKIGGLIGYDNTLWNGSVA-QPADAPMRK 201

Query: 248 SIRNF-------NKNLMEDERVSISMVPIGDGMTICQK 278
            +R +       NK L  D R+ I M+P+GDG+T+C++
Sbjct: 202 YVRYYRDFVIELNKALAADPRIEICMLPVGDGVTLCRR 239

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Petroselinum crispum (taxid: 4043)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q86IC8|CAMT2_DICDI Probable caffeoyl-CoA O-methyltransferase 2 OS=Dictyostelium discoideum GN=omt6 PE=1 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 117/179 (65%), Gaps = 1/179 (0%)

Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M    +Q     +L+Q+L A++ I++GV+TG SSL  AL + + G +VAC+      + A
Sbjct: 51  MLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTEYTQHA 110

Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIR 220
            K++ +AGV HK+ +K   A+ +L+ LI  GE ++YDF F+DA+K  Y  Y+EL L+LIR
Sbjct: 111 LKFWAKAGVDHKINLKIQPASKTLQELIDQGEENTYDFVFIDADKTGYDTYYELSLKLIR 170

Query: 221 VGGIIVIDNVLWHGKVADQMVN-DAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
            GGII IDNVL HG+VAD   N +   ++IR  N  ++ D+RV+ S++PI DG+T+  K
Sbjct: 171 KGGIIAIDNVLQHGRVADPNANVEPNLVAIRALNDKILADKRVTKSLLPIADGITLITK 229

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W4|TSM1_ARATH Tapetum-specific methyltransferase 1 OS=Arabidopsis thaliana GN=TSM1 PE=1 SV=2

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/235 (39%), Positives = 140/235 (59%), Gaps = 18/235 (7%)

Query: 57  DEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRG--SQMQVSPDQAQLL 111
           D +  +K ++  +  L  YI+      RE E+L++LRE T    G  S+M V  D++  L
Sbjct: 2   DGRLPDKGILK-SEALKQYIMETTAYPREHELLKELREATIQRYGNLSEMGVPVDESLFL 60

Query: 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 171
           +MLV+I+ A+  IE+GV+TGYS   +AL LPE G + A + D     +  ++ ++AGV H
Sbjct: 61  SMLVKIINAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLGLEFMKKAGVDH 120

Query: 172 KVKIKHGLAADSLKAL--ILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229
           K+     + +D+++ L  +LNGE   YDFAFVDA+K  Y  + E LL+L++VGGII  DN
Sbjct: 121 KINF---IQSDAVRGLDQLLNGEKQEYDFAFVDADKTNYVYFLEKLLKLVKVGGIIAFDN 177

Query: 230 VLWHGKVADQMVND------AKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
            LW G +  Q  N+      A   ++  FNK L  D RV I+ + IGDG+T+C++
Sbjct: 178 TLWFGTLI-QKENEVPGHMRAYREALLEFNKILARDPRVEIAQISIGDGLTLCRR 231

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43237|CAMT_VITVI Caffeoyl-CoA O-methyltransferase OS=Vitis vinifera PE=2 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/219 (41%), Positives = 131/219 (59%), Gaps = 14/219 (6%)

Query: 72  LYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++ A+  +E+GV
Sbjct: 24  LYQYILETSVYPREPESMKELRELTAQHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGV 83

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL LP+ G ++A + +  + E+     ++AGV+HK+  K G A   L  +I
Sbjct: 84  YTGYSLLATALALPDDGKILAMDINKENYELGLPVIQKAGVAHKIDFKEGPALPVLDQMI 143

Query: 189 LNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI 247
            +G+   S+DF FVDA+K  Y  Y + L+ L++VGGII  DN LW+G V      DA   
Sbjct: 144 EDGKYHGSFDFIFVDADKDNYLNYHKRLIDLVKVGGIIGYDNTLWNGSVV--APPDAPLR 201

Query: 248 S----IRNF----NKNLMEDERVSISMVPIGDGMTICQK 278
                 R+F    NK L  D R+ I M+P+GDG+T+C++
Sbjct: 202 KYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRR 240

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Vitis vinifera (taxid: 29760)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
255548155	290	o-methyltransferase, putative [Ricinus c	0.996	0.958	0.700	1e-111
297821086	278	O-methyltransferase family 3 protein [Ar	0.974	0.978	0.691	1e-111
15228652	278	S-adenosyl-L-methionine-dependent methyl	0.974	0.978	0.694	1e-110
225453692	280	PREDICTED: probable caffeoyl-CoA O-methy	0.806	0.803	0.835	1e-109
356525835	311	PREDICTED: O-methyltransferase mdmC-like	0.881	0.790	0.772	1e-109
388521881	314	unknown [Lotus japonicus]	0.935	0.831	0.691	1e-109
224068269	352	trans-caffeoyl-coa 3-o-methyltransferase	0.810	0.642	0.778	1e-103
356555143	242	PREDICTED: LOW QUALITY PROTEIN: probable	0.838	0.966	0.773	1e-102
334186194	352	S-adenosyl-L-methionine-dependent methyl	0.931	0.738	0.673	1e-102
449460066	293	PREDICTED: tricin synthase 1-like [Cucum	0.921	0.877	0.677	1e-101

>gi|255548155|ref|XP_002515134.1| o-methyltransferase, putative [Ricinus communis] gi|223545614|gb|EEF47118.1| o-methyltransferase, putative [Ricinus communis]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/287 (70%), Positives = 232/287 (80%), Gaps = 9/287 (3%)

Query: 2   ASSLVANRFAFVLLKTEKTVAK-FHSFPLSERLRLRPCK--------FKTKNQFTTNCCV 52
           A +   NR +F+  +     A      PL   +  R CK          + +  +++  V
Sbjct: 4   ACAWAVNRCSFLACQRATFAATVIRGRPLRIAISFRECKSIRFARNCCCSSSSTSSDLAV 63

Query: 53  SSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLA 112
             A+D+KY NKQ+IS+TP LYDYIL NVREPEILRQLREETA M GSQMQVSPDQAQLLA
Sbjct: 64  VVANDDKYGNKQIISLTPCLYDYILSNVREPEILRQLREETAAMPGSQMQVSPDQAQLLA 123

Query: 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172
           MLVQILGA+RCIE+GVYTGYSSLA+ALVLPESGCLVACERDA SL VA+KYYERAGVSHK
Sbjct: 124 MLVQILGAKRCIELGVYTGYSSLAVALVLPESGCLVACERDANSLNVAQKYYERAGVSHK 183

Query: 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 232
           V +KHG+AADSLK+LILNGE SSYDFAFVDAEK+M QEYFELLLQL+RVGG+IV+DNVLW
Sbjct: 184 VHVKHGMAADSLKSLILNGEESSYDFAFVDAEKKMNQEYFELLLQLVRVGGVIVVDNVLW 243

Query: 233 HGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           HGKVAD ++NDA+T+SIRNFNK LMED RVSISMV IGDGMTIC+K+
Sbjct: 244 HGKVADPLINDARTVSIRNFNKTLMEDNRVSISMVSIGDGMTICRKK 290

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821086|ref|XP_002878426.1| O-methyltransferase family 3 protein [Arabidopsis lyrata subsp. lyrata] gi|297324264|gb|EFH54685.1| O-methyltransferase family 3 protein [Arabidopsis lyrata subsp. lyrata]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/285 (69%), Positives = 235/285 (82%), Gaps = 13/285 (4%)

Query: 1   MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSA----- 55
           M++ L  NR +  + +T  T+    +  +     +R  KF   ++   NC ++ A     
Sbjct: 1   MSTGLALNRCSISVCRTAGTLLNRPTVSV-----VRSLKFS--HRLIGNCSIAPADPVVV 53

Query: 56  -HDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
             D KY NK+VIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQLLAML
Sbjct: 54  AEDVKYGNKEVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAML 113

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQ+LGA+RCIEVGVYTGYSSLA+ALVLPESGCLVACERD+ SLEVAK+YY+ AGVSHKV 
Sbjct: 114 VQLLGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYKLAGVSHKVN 173

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           +KHGLAA+SLK++I NGE SSYDFAFVDA+KRMYQ+YFELLLQL+RVGG+IV+DNVLWHG
Sbjct: 174 VKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHG 233

Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           +V D +VNDAKTISIRNFNK LM+D+RVSISMVPIGDGMTIC+KR
Sbjct: 234 RVTDPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228652|ref|NP_191759.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|6899898|emb|CAB71907.1| putative protein [Arabidopsis thaliana] gi|17979264|gb|AAL49948.1| AT3g62000/F21F14_170 [Arabidopsis thaliana] gi|20334816|gb|AAM16164.1| AT3g62000/F21F14_170 [Arabidopsis thaliana] gi|332646770|gb|AEE80291.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/285 (69%), Positives = 232/285 (81%), Gaps = 13/285 (4%)

Query: 1   MASSLVANRFAFVLLKT------EKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSS 54
           M++ L  NR +  + +T        TV+   S   S RL +  C     + +        
Sbjct: 1   MSTGLALNRCSVSVCRTAVTLLNRPTVSVARSLKFSRRL-IGNCSIAPADPYVV------ 53

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           A D+KY NKQVIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQLLAML
Sbjct: 54  ADDDKYGNKQVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAML 113

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQ+L A+RCIEVGVYTGYSSLA+ALVLPESGCLVACERD+ SLEVAK+YYE AGVSHKV 
Sbjct: 114 VQMLAAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVN 173

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           +K GLAA+SLK++I NGE +SYDFAFVDA+KRMYQ+YFELLLQL+RVGG+IV+DNVLWHG
Sbjct: 174 VKQGLAAESLKSMIQNGEGASYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHG 233

Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           +V+D MVNDAKTISIRNFNK LM+D+RVSISMVPIGDGMTIC+KR
Sbjct: 234 RVSDPMVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453692|ref|XP_002269070.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Vitis vinifera] gi|296089045|emb|CBI38748.3| unnamed protein product [Vitis vinifera]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/225 (83%), Positives = 212/225 (94%)

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           + D KY NKQVI++TP LYDYIL NVREPEILRQLREETA MRGSQMQVSP+QAQLLAML
Sbjct: 56  SDDPKYGNKQVITITPRLYDYILTNVREPEILRQLREETANMRGSQMQVSPEQAQLLAML 115

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQILGA+RCIEVGVYTGYSSLAIALVLPESG LVACERD++SLEVAK+YY++AGVSHKV 
Sbjct: 116 VQILGAERCIEVGVYTGYSSLAIALVLPESGYLVACERDSKSLEVAKRYYKQAGVSHKVD 175

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           +KHGLA+D+LK+LILNGE+ SYDFAFVDAEKRM QEYFELLLQL+R  G+IVIDNVLWHG
Sbjct: 176 VKHGLASDALKSLILNGESGSYDFAFVDAEKRMNQEYFELLLQLVRTRGVIVIDNVLWHG 235

Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           KVAD +VNDA+T+SIRNFNKN+MED+RVSISMVPIGDG+TIC+KR
Sbjct: 236 KVADPLVNDARTVSIRNFNKNIMEDKRVSISMVPIGDGITICRKR 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525835|ref|XP_003531527.1| PREDICTED: O-methyltransferase mdmC-like [Glycine max]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/250 (77%), Positives = 222/250 (88%), Gaps = 4/250 (1%)

Query: 33  LRLRPCKFKTKNQFTTNCCVSS---AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQL 89
            R R C+ + K +   +C  S    ++DE YSNKQV+S+TP LYDY+L+NVREPEILRQL
Sbjct: 63  FRFRECRCRWK-RIVRSCSTSEFVISNDENYSNKQVVSLTPRLYDYVLKNVREPEILRQL 121

Query: 90  REETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVA 149
           R+ETA MRGSQMQVSPDQAQLLAMLVQILGA+RCIEVGVYTGYSSLAIALVLPESG LVA
Sbjct: 122 RQETASMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAIALVLPESGHLVA 181

Query: 150 CERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ 209
           CERDA+SL+VAKKYY+ AGVSHKV +K GLA DSL++LILNGEA SYDFAF+DAEK+M +
Sbjct: 182 CERDAKSLDVAKKYYQLAGVSHKVDVKLGLAMDSLESLILNGEAGSYDFAFIDAEKKMNE 241

Query: 210 EYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPI 269
           +YFELLLQL+RVGG+IVIDNVLWHGKV+D +VND KTISIRNFN+ LMED+RVSISMVPI
Sbjct: 242 KYFELLLQLVRVGGLIVIDNVLWHGKVSDPLVNDPKTISIRNFNEKLMEDKRVSISMVPI 301

Query: 270 GDGMTICQKR 279
           GDGMTIC+KR
Sbjct: 302 GDGMTICRKR 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521881|gb|AFK49002.1| unknown [Lotus japonicus]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/292 (69%), Positives = 228/292 (78%), Gaps = 31/292 (10%)

Query: 15  LKTEKTVAKFHSFPLS-------------------------ERLRLRPCKFKTKNQFTTN 49
           L+  K    FHSFP S                            RLR CK+K   Q   +
Sbjct: 25  LRPVKVFTSFHSFPSSCTVNHRSLHVSTARWCCSASSCSSRCCFRLRGCKWK---QVVRS 81

Query: 50  CCVSS---AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPD 106
           C ++    A DE Y NKQV+S+TP LY Y+L+NVREPEILRQLREETA MRGSQMQVSPD
Sbjct: 82  CSITDIVIASDESYGNKQVVSLTPRLYGYVLKNVREPEILRQLREETASMRGSQMQVSPD 141

Query: 107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 166
           QAQLLAMLVQILGA+RCIEVGVYTGYSSLAIALVLPESG LVA ERD +SL+VAKKYY+ 
Sbjct: 142 QAQLLAMLVQILGAERCIEVGVYTGYSSLAIALVLPESGRLVARERDPKSLDVAKKYYQL 201

Query: 167 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV 226
           AGVSHKV +K GLA DSL++LILNGEA SYDFAF+DAEKRM Q+YFELLLQL+RVGG+IV
Sbjct: 202 AGVSHKVDVKLGLAEDSLESLILNGEAGSYDFAFIDAEKRMTQKYFELLLQLVRVGGVIV 261

Query: 227 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
           IDNVLWHGKVAD +V+D+KTISIRNFN+ LMED+RVSISMVPIGDGMTIC+K
Sbjct: 262 IDNVLWHGKVADPLVSDSKTISIRNFNQQLMEDKRVSISMVPIGDGMTICRK 313

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068269|ref|XP_002302692.1| trans-caffeoyl-coa 3-o-methyltransferase-like protein [Populus trichocarpa] gi|222844418|gb|EEE81965.1| trans-caffeoyl-coa 3-o-methyltransferase-like protein [Populus trichocarpa]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/239 (77%), Positives = 204/239 (85%), Gaps = 13/239 (5%)

Query: 45  QFTTNCCVSS-------------AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLRE 91
           +   NCC  S             A+DEKY NKQ IS+TP LYDYIL NVREPEILRQLRE
Sbjct: 44  RLARNCCSYSCSYPNPNDSAFVVANDEKYGNKQNISLTPRLYDYILSNVREPEILRQLRE 103

Query: 92  ETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACE 151
           ETA MRGSQMQVSPDQAQLLAMLVQILGA+RCIE+GVYTGYSSLA+ALVLP+S CLVACE
Sbjct: 104 ETASMRGSQMQVSPDQAQLLAMLVQILGAKRCIELGVYTGYSSLAVALVLPDSACLVACE 163

Query: 152 RDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEY 211
           RDA+SLEVAKKYYE AGVSHKV +KHG+AAD LK+LILNGE+ SYDFAFVDAEKRM QEY
Sbjct: 164 RDAKSLEVAKKYYELAGVSHKVDVKHGMAADILKSLILNGESCSYDFAFVDAEKRMNQEY 223

Query: 212 FELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIG 270
           FELLLQL+RV G+IVIDNVLWHGKVAD +VNDAKT+SIR+FNKN+MED RVSISM   G
Sbjct: 224 FELLLQLVRVDGVIVIDNVLWHGKVADPLVNDAKTVSIRSFNKNIMEDPRVSISMTQAG 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555143|ref|XP_003545896.1| PREDICTED: LOW QUALITY PROTEIN: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Glycine max]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/234 (77%), Positives = 205/234 (87%)

Query: 46  FTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSP 105
           F T      A D+ Y  KQV+S+TP LYDY+L+NVREPEILRQLR+ET  M GSQM VSP
Sbjct: 9   FITTTEFVIASDDNYGKKQVVSLTPFLYDYVLKNVREPEILRQLRQETTSMLGSQMXVSP 68

Query: 106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 165
           D AQLLAMLVQILGA++CIEVGVYTGYSSLA+ALVLPESG LVACERDA+SL+VAKKYY+
Sbjct: 69  DLAQLLAMLVQILGAEQCIEVGVYTGYSSLALALVLPESGRLVACERDAKSLDVAKKYYQ 128

Query: 166 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGII 225
            AGVSHKV +K GLA DSL++LILNGEA SYDFAF DAEK+M ++YFELLLQL+RVGG+I
Sbjct: 129 LAGVSHKVDVKVGLAMDSLESLILNGEAGSYDFAFTDAEKKMNEKYFELLLQLVRVGGLI 188

Query: 226 VIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           VIDNVLWHGKVAD +VND KT SIRNFN+ LMED+RVSISMVPIGDGMTIC+KR
Sbjct: 189 VIDNVLWHGKVADPLVNDPKTFSIRNFNQKLMEDKRVSISMVPIGDGMTICRKR 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186194|ref|NP_001190157.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|332646771|gb|AEE80292.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/273 (67%), Positives = 221/273 (80%), Gaps = 13/273 (4%)

Query: 1   MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAH---- 56
           M++ L  NR +  + +T  T+    +  ++  L+          +   NC ++ A     
Sbjct: 1   MSTGLALNRCSVSVCRTAVTLLNRPTVSVARSLKF-------SRRLIGNCSIAPADPYVV 53

Query: 57  --DEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
             D+KY NKQVIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQLLAML
Sbjct: 54  ADDDKYGNKQVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAML 113

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQ+L A+RCIEVGVYTGYSSLA+ALVLPESGCLVACERD+ SLEVAK+YYE AGVSHKV 
Sbjct: 114 VQMLAAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVN 173

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           +K GLAA+SLK++I NGE +SYDFAFVDA+KRMYQ+YFELLLQL+RVGG+IV+DNVLWHG
Sbjct: 174 VKQGLAAESLKSMIQNGEGASYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHG 233

Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMV 267
           +V+D MVNDAKTISIRNFNK LM+D+RVSISMV
Sbjct: 234 RVSDPMVNDAKTISIRNFNKKLMDDKRVSISMV 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460066|ref|XP_004147767.1| PREDICTED: tricin synthase 1-like [Cucumis sativus]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/285 (67%), Positives = 219/285 (76%), Gaps = 28/285 (9%)

Query: 23  KFHSFP---LSERLRLRPC----KFKT-KNQFTTNCCV--------------------SS 54
           +F S+P   L++   L P       KT K  F+ +CCV                    S+
Sbjct: 9   RFMSYPQNLLTKFSSLSPVTAFPSIKTVKGAFSCSCCVVCQFNLDDFSSKKRHLERVYST 68

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
             + K+SNKQ ISV   LYDYIL NVREPEIL QLREETA MRGS+MQVSPDQAQLLAML
Sbjct: 69  NSNGKFSNKQFISVDSELYDYILSNVREPEILAQLREETASMRGSKMQVSPDQAQLLAML 128

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQILGA+RCIEVGVYTGYSSLA+ALVLPESG LVAC+RD   LEVAK+YYE AGVSHKV 
Sbjct: 129 VQILGAKRCIEVGVYTGYSSLAVALVLPESGRLVACDRDLECLEVAKRYYELAGVSHKVD 188

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           ++HGLAAD+LK+LI NGEASSYDFAF+DAEKRM +EYFELLLQL+RV G+IVIDNVLW+G
Sbjct: 189 VRHGLAADTLKSLIANGEASSYDFAFIDAEKRMNEEYFELLLQLVRVRGLIVIDNVLWYG 248

Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           KVAD MV+D  T SIR  NK +MED+RV ISMVPIGDGMTICQKR
Sbjct: 249 KVADPMVDDKMTDSIRRLNKKIMEDDRVGISMVPIGDGMTICQKR 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.874	0.841	0.729	2.8e-89
TIGR_CMR|CBU_0924	222	CBU_0924 "O-methyltransferase"	0.759	0.954	0.434	1e-45
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.777	0.812	0.444	5.6e-45
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.749	0.730	0.428	2.4e-44
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.813	0.900	0.429	1e-43
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.741	0.892	0.430	6.1e-39
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.777	0.931	0.391	1.5e-37
UNIPROTKB|A4IFU3	262	COMTD1 "COMTD1 protein" [Bos t	0.745	0.793	0.387	2.4e-37
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.695	0.836	0.425	3.9e-37
UNIPROTKB|Q86VU5	262	COMTD1 "Catechol O-methyltrans	0.741	0.790	0.394	8e-37

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 181/248 (72%), Positives = 208/248 (83%)

Query:    33 LRL-RPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLRE 91
             +RL RP      N  T    +  A DEKY NK VIS+TP LYDY+L NVRE EIL+QLRE
Sbjct:    46 IRLNRPTDSVVGNCPTEASPLVMADDEKYGNKMVISLTPRLYDYVLNNVREHEILKQLRE 105

Query:    92 ETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACE 151
             ETA    SQ+QVSPDQAQLLAMLV+ILGA+RCIEVGVYTGYSSLA+ALVLPESG LVAC+
Sbjct:   106 ETAI---SQIQVSPDQAQLLAMLVEILGAKRCIEVGVYTGYSSLAVALVLPESGRLVACD 162

Query:   152 RDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEY 211
             +DA +LEVAK+YYE AGVSHKV +KHGLAA+SL ++I NGE SSYDFAF+DA+K MYQEY
Sbjct:   163 KDANALEVAKRYYELAGVSHKVTVKHGLAAESLMSMIQNGEESSYDFAFLDADKAMYQEY 222

Query:   212 FELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGD 271
             FE LL+L+RVGG+IVIDNVLWHG VAD  VND +TIS+RNFNK LM+D+RVSISMV IGD
Sbjct:   223 FESLLRLVRVGGVIVIDNVLWHGWVADSTVNDERTISLRNFNKKLMDDQRVSISMVSIGD 282

Query:   272 GMTICQKR 279
             GMTIC+KR
Sbjct:   283 GMTICRKR 290

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

TIGR_CMR|CBU_0924 CBU_0924 "O-methyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 93/214 (43%), Positives = 149/214 (69%)

Query:    68 VTPPLYDYILR-NVREPEILRQLREETAGMRGSQ-MQVSPDQAQLLAMLVQILGAQRCIE 125
             +TP LY Y+L+ ++REP +L +LREET     +  MQ +P+QAQLLA+LV+++ A++ I+
Sbjct:     8 LTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVID 67

Query:   126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185
             +G +TGYS++A+ L LP+ G L+ C+ D +S  +AK+Y+E+AG+S K+ ++   A D+L 
Sbjct:    68 IGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA 127

Query:   186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK 245
              LI  G+A  YD  ++DA+K     Y+E  L+L+R GG+I +DNVL  G+VAD+      
Sbjct:   128 ELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSEN 187

Query:   246 TISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
                IR FN+ + +DERV + ++PIGDG+T+ +K+
Sbjct:   188 NQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK 221

GO:0008171 "O-methyltransferase activity" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 97/218 (44%), Positives = 148/218 (67%)

Query:    62 NKQVISVTPPLYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
             +K +I  + PL+ YIL  ++RE  IL++LR  TA     +M VS DQAQL+A L++++ A
Sbjct:    49 HKSIIGKSSPLWQYILDHSLREHPILKKLRLLTAEYPWGKMMVSCDQAQLMANLIKLIKA 108

Query:   121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
             ++ IEVGV TGY++L++AL LP++G ++AC+ +    ++ K  ++ AGV HK+ ++   A
Sbjct:   109 KKVIEVGVLTGYNALSMALALPDNGRVIACDINEDYAKIGKPLWKEAGVDHKIDLRIKPA 168

Query:   181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQM 240
               +L  L+  GEA ++DFAF+DA+K  Y EY+E  L+LI+ GGII IDNVL  G V    
Sbjct:   169 TQTLDELLAGGEAETFDFAFIDADKESYNEYYEKCLRLIKKGGIIAIDNVLRCGMVLKPR 228

Query:   241 VNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
              +D  T SI + N+ L+ D RV+ISM+P+GDG+T+  K
Sbjct:   229 KDDLATQSIHHLNEKLVRDARVNISMIPMGDGVTLVFK 266

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 90/210 (42%), Positives = 143/210 (68%)

Query:    71 PLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
             PL  Y++ N +RE  +L +LR  T     + M V+ +QAQL+A L +++ A + IE+G+Y
Sbjct:    77 PLLQYVVNNSLREHPVLTKLRLRTMEDARNVMMVASEQAQLMANLAKLIEANKTIEIGLY 136

Query:   130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
             TGY++L++ALV+PE+G +VACE +   +++ K ++  AGV +K+ I+   A ++L  L+ 
Sbjct:   137 TGYNALSLALVVPENGRVVACEINEDYVKIGKPFFAEAGVENKIDIRLKPAVETLDELLS 196

Query:   190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISI 249
              GEA  YDF F+DA+K+ Y+ Y+E  LQL+R GGI+ IDNVLW G+V +   +D  + +I
Sbjct:   197 AGEAGMYDFVFIDADKKNYETYYEKSLQLVRKGGIVAIDNVLWGGRVINPAEDDLSSQAI 256

Query:   250 RNFNKNLMEDERVSISMVPIGDGMTICQKR 279
                NK L +DER+ +SM+ +GDG+T+  KR
Sbjct:   257 DKLNKKLHKDERIDLSMLTVGDGLTLAIKR 286

GO:0008171 "O-methyltransferase activity" evidence=IEA

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 103/240 (42%), Positives = 146/240 (60%)

Query:    52 VSSAHDEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQA 108
             + +AH +  S  + +  +  LY Y+L      REPE +R LR  T   +   MQ S D+A
Sbjct:    11 IKNAHSDIDSTNKTLLKSDALYKYVLDTTVLPREPECMRDLRLITDKHQWGFMQSSADEA 70

Query:   109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG 168
             QLL ML+++ GA+R IEVGV+TGYS LA AL LPE G +VA + D  S E+ + + E+AG
Sbjct:    71 QLLGMLLKMAGAKRTIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIGRPFLEKAG 130

Query:   169 VSHKVKIKHGLAADSLKALILN----GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI 224
             V+HKV  + G   + L  L+      G  +++DFAFVDA+K  Y +Y E LLQL+RVGG 
Sbjct:   131 VAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFVDADKPNYVKYHEQLLQLVRVGGH 190

Query:   225 IVIDNVLWHGKVA---DQMVNDAK---TISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
             IV DN LW G VA   D  ++D     +++IR+ N  L  D R+ +  + I DG+TIC++
Sbjct:   191 IVYDNTLWAGTVALPPDTPLSDLDRRFSVAIRDLNSRLAADPRIDVCQLAIADGITICRR 250

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 93/216 (43%), Positives = 129/216 (59%)

Query:    72 LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
             LY YIL      REPE+LR+LR  T     + M  +PD  QL+ ML+ ++ A++ IEVGV
Sbjct:    15 LYKYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVNARKTIEVGV 74

Query:   129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
             +TGYS L  AL LPE G ++A + +  S E+     ++AGV HK+  K   A  +L  L+
Sbjct:    75 FTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEALPALDELL 134

Query:   189 LNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK-T 246
              N      +DFAFVDA+K  Y  Y E L++LI+VGGIIV DN LW G VA+   +  +  
Sbjct:   135 NNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEPDSSTPEWR 194

Query:   247 ISIRN----FNKNLMEDERVSISMVPIGDGMTICQK 278
             I ++      NK L  D+RV IS   +GDG+TIC++
Sbjct:   195 IEVKKATLELNKKLSADQRVQISQAALGDGITICRR 230

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 92/235 (39%), Positives = 140/235 (59%)

Query:    57 DEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRG--SQMQVSPDQAQLL 111
             D +  +K ++  +  L  YI+      RE E+L++LRE T    G  S+M V  D++  L
Sbjct:     2 DGRLPDKGILK-SEALKQYIMETTAYPREHELLKELREATIQRYGNLSEMGVPVDESLFL 60

Query:   112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 171
             +MLV+I+ A+  IE+GV+TGYS   +AL LPE G + A + D     +  ++ ++AGV H
Sbjct:    61 SMLVKIINAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLGLEFMKKAGVDH 120

Query:   172 KVKIKHGLAADSLKAL--ILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229
             K+     + +D+++ L  +LNGE   YDFAFVDA+K  Y  + E LL+L++VGGII  DN
Sbjct:   121 KINF---IQSDAVRGLDQLLNGEKQEYDFAFVDADKTNYVYFLEKLLKLVKVGGIIAFDN 177

Query:   230 VLWHGKVADQMVND------AKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
              LW G +  Q  N+      A   ++  FNK L  D RV I+ + IGDG+T+C++
Sbjct:   178 TLWFGTLI-QKENEVPGHMRAYREALLEFNKILARDPRVEIAQISIGDGLTLCRR 231

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|A4IFU3 COMTD1 "COMTD1 protein" [Bos taurus (taxid:9913)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 81/209 (38%), Positives = 130/209 (62%)

Query:    71 PLYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
             PL+ Y+L R++RE   LR LR  T         ++ +QAQLLA L +++ A++ +++G +
Sbjct:    53 PLWQYLLSRSIREHPALRSLRLLTLEQPQGDSMMTREQAQLLANLARLIKAKKALDLGTF 112

Query:   130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
             TGYS+LA+AL LP +GC+V CE DA   E+ +  + +A   HK+ ++   A ++L  L+ 
Sbjct:   113 TGYSALALALALPPAGCVVTCEVDAGPPELGRPLWRQAEEEHKIDLRLKPALETLDELLA 172

Query:   190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISI 249
              GEA ++D A VDA+K     Y+E  LQL+R GG++ + +VL  G+V      D     +
Sbjct:   173 AGEAGTFDVAVVDADKENCTAYYERCLQLLRPGGVLAVLSVLCQGEVLQPKPQDKAAQCV 232

Query:   250 RNFNKNLMEDERVSISMVPIGDGMTICQK 278
             RN N+ ++ D RV IS++P+GDG+T+  K
Sbjct:   233 RNLNERILRDARVHISLLPLGDGLTLAFK 261

GO:0005739 "mitochondrion" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 88/207 (42%), Positives = 128/207 (61%)

Query:    81 REPEILRQLREETAGMRG--SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIA 138
             RE E+L++LR+ T    G  S+M+V  D+   L+MLV+I+ A+  IE+GV+TGYS L  A
Sbjct:    28 REHELLKELRKATVQKYGNLSEMEVPVDEGHFLSMLVKIMNAKNTIEIGVFTGYSLLTTA 87

Query:   139 LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI-LNGEASSYD 197
             L LPE G + A + D  + EV  ++ ++AGV HK+   H   +D LKAL  L  +   +D
Sbjct:    88 LALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIH---SDGLKALDQLVNDKCEFD 144

Query:   198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD------QMVNDAKTISIRN 251
             FAF DA+K  Y  + E LL+L++VGGII  DN LW G VA+      + + + +   I  
Sbjct:   145 FAFADADKSSYVNFHERLLKLVKVGGIIAFDNTLWFGFVAEDEDGVPEHMREYRAALIE- 203

Query:   252 FNKNLMEDERVSISMVPIGDGMTICQK 278
             FNK L  D RV +S + IGDG+T+C++
Sbjct:   204 FNKKLALDPRVEVSQISIGDGITLCRR 230

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

UNIPROTKB|Q86VU5 COMTD1 "Catechol O-methyltransferase domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 82/208 (39%), Positives = 127/208 (61%)

Query:    72 LYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYT 130
             L+ Y+L R++RE   LR LR  T         ++ +QAQLLA L +++ A++ +++G +T
Sbjct:    54 LWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFT 113

Query:   131 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190
             GYS+LA+AL LP  G +V CE DA+  E+ +  + +A   HK+ ++   A ++L  L+  
Sbjct:   114 GYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA 173

Query:   191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIR 250
             GEA ++D A VDA+K     Y+E  LQL+R GGI+ +  VLW GKV      D     +R
Sbjct:   174 GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVR 233

Query:   251 NFNKNLMEDERVSISMVPIGDGMTICQK 278
             N N+ +  D RV IS++P+GDG+T+  K
Sbjct:   234 NLNERIRRDVRVYISLLPLGDGLTLAFK 261

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BIG7	CMTD1_MOUSE	2, ., 1, ., 1, ., -	0.3502	0.8351	0.8893	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766
4th Layer	2.1.1.6	LOW CONFIDENCE prediction!
3rd Layer	2.1.1.33	0.737

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	1e-155
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	3e-85
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	2e-59
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	6e-54
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	3e-48
pfam13578	105	pfam13578, Methyltransf_24, Methyltransferase doma	5e-16
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	1e-07
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-07
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	2e-07
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-06
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	4e-04
PRK13943	322	PRK13943, PRK13943, protein-L-isoaspartate O-methy	4e-04
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	6e-04

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score =  434 bits (1117), Expect = e-155
 Identities = 199/289 (68%), Positives = 234/289 (80%), Gaps = 21/289 (7%)

Query: 1   MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSS------ 54
           M++ L  NR +F + +T  T+    +  +   L+           F+     +       
Sbjct: 1   MSTGLALNRCSFSVCRTATTLLNRPTVSVCRSLK-----------FSRRLIGNCSIAPAD 49

Query: 55  ----AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQL 110
               A+D+KY NKQVIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQL
Sbjct: 50  PVVVANDDKYGNKQVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQL 109

Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
           LAMLVQILGA+RCIEVGVYTGYSSLA+ALVLPESGCLVACERD+ SLEVAK+YYE AGVS
Sbjct: 110 LAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS 169

Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230
           HKV +KHGLAA+SLK++I NGE SSYDFAFVDA+KRMYQ+YFELLLQL+RVGG+IV+DNV
Sbjct: 170 HKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNV 229

Query: 231 LWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           LWHG+VAD +VNDAKTISIRNFNK LM+D+RVSISMVPIGDGMTIC+KR
Sbjct: 230 LWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278

Length = 278

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  253 bits (648), Expect = 3e-85
 Identities = 95/200 (47%), Positives = 140/200 (70%)

Query: 80  VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIAL 139
           VRE EIL++LRE TA +  S MQ+SP++ Q L+ML++++GA+R +E+GV+TGYS LA AL
Sbjct: 5   VREHEILKELREATAKLPLSPMQISPEEGQFLSMLLKLIGAKRTLEIGVFTGYSLLATAL 64

Query: 140 VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199
            LPE G + AC+ D  + E+   + ++AGV+ K+  + G A  +L+ L+ +     +DF 
Sbjct: 65  ALPEDGKITACDIDPEAYEIGLPFIQKAGVADKISFRLGDALPTLEELVKDKPLGEFDFI 124

Query: 200 FVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMED 259
           FVDA+K  Y  Y+E LL+L++VGG+I IDN LW GKVA+      KT+ +R  NK L  D
Sbjct: 125 FVDADKSNYPNYYERLLELVKVGGLIAIDNTLWFGKVAEPDDEVPKTVRVRELNKLLASD 184

Query: 260 ERVSISMVPIGDGMTICQKR 279
           ERV ISM+P+GDG+T+C++ 
Sbjct: 185 ERVEISMLPVGDGITLCRRI 204

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score =  187 bits (478), Expect = 2e-59
 Identities = 83/222 (37%), Positives = 125/222 (56%), Gaps = 9/222 (4%)

Query: 62  NKQVISVTPPLYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
            +++ ++   LYDY+      EP  L    EE A   G  +   P+   LL +L ++ G 
Sbjct: 2   TQRMPNMDEDLYDYLEALIPGEPPALLAELEEFARENGVPIID-PETGALLRLLARLSGP 60

Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL- 179
           +R +E+G   GYS+L +AL LP+ G L   ERD    E+A++    AGV  ++++  G  
Sbjct: 61  KRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD 120

Query: 180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQ 239
           A D L  L       S+D  F+DA+K  Y EY E  L L+R GG+IV DNVL+ G+VAD 
Sbjct: 121 ALDVLSRL----LDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADP 176

Query: 240 MVNDAKTI--SIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
            + DA+T    +R+FN  L+ED R    ++P+GDG+ + +KR
Sbjct: 177 SIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKR 218

Length = 219

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  174 bits (443), Expect = 6e-54
 Identities = 87/205 (42%), Positives = 126/205 (61%), Gaps = 7/205 (3%)

Query: 81  REPEILRQLREETAGMRG--SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIA 138
           RE E+L++LRE T    G  S+M+V  D+   L+MLV+I+ A+  +E+GV+TGYS L  A
Sbjct: 28  REHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTA 87

Query: 139 LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198
           L LPE G + A + D  + EV  ++ ++AGV HK+      A  +L  L+ N     +DF
Sbjct: 88  LALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147

Query: 199 AFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVA---DQMVNDAKTI--SIRNFN 253
           AFVDA+K  Y  + E LL+L++VGGII  DN LW G VA   D++    +    ++  FN
Sbjct: 148 AFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFN 207

Query: 254 KNLMEDERVSISMVPIGDGMTICQK 278
           K L  D RV IS + IGDG+T+C++
Sbjct: 208 KLLASDPRVEISQISIGDGVTLCRR 232

Length = 234

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  160 bits (406), Expect = 3e-48
 Identities = 89/219 (40%), Positives = 133/219 (60%), Gaps = 14/219 (6%)

Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++ A+  +E+GV
Sbjct: 29  LYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGV 88

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL LPE G ++A + +  + E+     ++AGV+HK+  + G A   L  +I
Sbjct: 89  YTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI 148

Query: 189 LNGEA-SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA--- 244
            +G+   ++DF FVDA+K  Y  Y + L+ L++VGG+I  DN LW+G V      DA   
Sbjct: 149 EDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAP--PDAPMR 206

Query: 245 KTIS-IRNF----NKNLMEDERVSISMVPIGDGMTICQK 278
           K +   R+F    NK L  D R+ I M+P+GDG+T+C++
Sbjct: 207 KYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRR 245

Length = 247

>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain

 Score = 71.5 bits (176), Expect = 5e-16
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 124 IEVGVYTGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181
           +E+GVY+G S+L +A  L ++G   L + +        A     +AG++ +V++  G + 
Sbjct: 1   VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPG--AEAGANLRKAGLADRVRLLRGDSL 58

Query: 182 DSLKALILNGEASSYDFAFVDA--EKRMYQEYFELLLQLIRVGGIIVIDNV 230
           ++L  L       S D  F+D            EL L L+  GGIIV  ++
Sbjct: 59  EALARL----PDGSIDLLFIDGDHTYEAVLADLELWLPLLAPGGIIVFHDI 105

This family appears to be a methyltransferase domain. Length = 105

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 5/108 (4%)

Query: 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183
           +++G  TG  ++  +L++ E+G + A ++D +++ + ++  E+ GV + + +  G A + 
Sbjct: 45  LDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE- 103

Query: 184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231
               IL      +D  F+       +E      ++I+ GG IVID +L
Sbjct: 104 ----ILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAIL 147

Length = 198

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181
           R +++G  TG  +LA+A        +   +    +LE+A+K    A ++  V++  G   
Sbjct: 1   RVLDLGCGTGALALALASGPGAR--VTGVDISPVALELARK-AAAALLADNVEVLKG--- 54

Query: 182 DSLKALILNGEASSYDFAFVD----AEKRMYQEYFELLLQLIRVGGIIVI 227
           D+ +      E  S+D    D            + E   +L++ GG++V+
Sbjct: 55  DAEELPPEADE--SFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 14/133 (10%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           R +Q+ + P  A  +   + I    R +E G  +G  +  +A  +   G +   E     
Sbjct: 73  RRTQI-IYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDF 131

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ--EYFEL 214
            + A++     G+  +V +K G   +         +    D  F+D    +       E 
Sbjct: 132 AKTARENLSEFGLGDRVTLKLGDVREG-------IDEEDVDAVFLD----LPDPWNVLEH 180

Query: 215 LLQLIRVGGIIVI 227
           +   ++ GG++V+
Sbjct: 181 VSDALKPGGVVVV 193

Length = 256

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 124 IEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182
           +++G  TG  ++ +A + P  G  +   +     LE+A++  +   +  ++    G A D
Sbjct: 6   LDIGCGTGSLAIELARLFP--GARVTGVDLSPEMLELARENAKL-ALGPRITFVQGDAPD 62

Query: 183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
           +L  L        +D  F+        E  + L  L++ GG +V+
Sbjct: 63  ALDLL------EGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 21/125 (16%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183
           +++G  TGY +  +A  L     +V  +    ++E AK+  ++ G    V+   G   D 
Sbjct: 8   LDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYE-NVEFIQG---DI 63

Query: 184 LKALILNGEASSYDFAFVDAEK-RMY--QEYFELLLQLIRVGGIIVIDNVLWHGKVADQM 240
            +   L  E +S+D    +     +    +  E ++++++ GG++++ + +   ++   +
Sbjct: 64  EELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSELPALL 123

Query: 241 VNDAK 245
            +  +
Sbjct: 124 EDLER 128

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 107 QAQLLAMLVQILG---AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY 163
           Q  L+A+ ++ +G     R +E+G  TGY++  ++ V+ E G +V+ E   +  E+AK+ 
Sbjct: 65  QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN 124

Query: 164 YERAGVSHKV 173
             R G+ + +
Sbjct: 125 VRRLGIENVI 134

Length = 322

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 8/124 (6%)

Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
           A  L+ L ++       ++G  TG  ++  A ++P  G + A ER+  +L++ ++   R 
Sbjct: 9   ALTLSKL-RLRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPEALDLIERNLRRF 66

Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
           GVS+ V ++ G A ++ + L         D  FV     + QE  E + + +R GG IV+
Sbjct: 67  GVSNIVIVE-GDAPEAPEDL-----LPDPDAVFVGGSGGLLQEILEAVERRLRPGGRIVL 120

Query: 228 DNVL 231
           + + 
Sbjct: 121 NAIT 124

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
PLN02476	278	O-methyltransferase	100.0
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	100.0
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	100.0
PLN02589	247	caffeoyl-CoA O-methyltransferase	100.0
COG4122	219	Predicted O-methyltransferase [General function pr	100.0
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	100.0
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.77
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.75
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.75
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.72
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.7
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.69
PRK04457	262	spermidine synthase; Provisional	99.68
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.68
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.67
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.66
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.66
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.66
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.66
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.66
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.65
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.64
PLN03075	296	nicotianamine synthase; Provisional	99.63
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.63
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.62
PRK07402	196	precorrin-6B methylase; Provisional	99.62
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.61
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.6
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.6
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.6
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.59
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.59
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.58
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.58
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.57
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.57
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.57
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.56
COG4123	248	Predicted O-methyltransferase [General function pr	99.55
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.55
PLN02244	340	tocopherol O-methyltransferase	99.55
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.55
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.54
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.53
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.53
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.53
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.53
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.53
PRK11207	197	tellurite resistance protein TehB; Provisional	99.53
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.53
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.52
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.52
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.52
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.52
PRK00811	283	spermidine synthase; Provisional	99.51
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.51
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.51
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.51
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.5
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.5
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.5
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.5
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.49
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.49
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.49
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.49
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.49
PRK01581	374	speE spermidine synthase; Validated	99.48
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.48
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.48
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.48
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.47
PRK04266	226	fibrillarin; Provisional	99.47
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.46
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.46
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.45
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.45
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.45
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.44
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.44
PRK08317	241	hypothetical protein; Provisional	99.44
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.44
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.44
PRK14968	188	putative methyltransferase; Provisional	99.44
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.44
PLN02366	308	spermidine synthase	99.42
PRK12335	287	tellurite resistance protein TehB; Provisional	99.41
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.41
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.41
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.41
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.4
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.4
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.4
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.4
PLN02336	475	phosphoethanolamine N-methyltransferase	99.38
PRK06922	677	hypothetical protein; Provisional	99.38
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.38
PRK14967	223	putative methyltransferase; Provisional	99.38
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.38
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.38
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.38
COG2890	280	HemK Methylase of polypeptide chain release factor	99.38
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.37
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	99.37
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.37
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.37
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.37
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.36
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.36
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.35
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.34
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.34
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.32
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.32
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.31
PLN02490	340	MPBQ/MSBQ methyltransferase	99.3
KOG2904	328	consensus Predicted methyltransferase [General fun	99.3
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.3
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.3
TIGR03438	301	probable methyltransferase. This model represents	99.29
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.29
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.29
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.29
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.29
PTZ00146	293	fibrillarin; Provisional	99.28
PLN02823	336	spermine synthase	99.28
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.28
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.28
KOG1271	227	consensus Methyltransferases [General function pre	99.27
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.26
PLN02336	475	phosphoethanolamine N-methyltransferase	99.26
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.25
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.25
PRK03612	521	spermidine synthase; Provisional	99.25
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.24
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.24
TIGR00438	188	rrmJ cell division protein FtsJ.	99.23
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.23
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.22
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.22
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.21
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.21
KOG4300	252	consensus Predicted methyltransferase [General fun	99.21
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.2
PRK06202	232	hypothetical protein; Provisional	99.2
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.18
PHA03412	241	putative methyltransferase; Provisional	99.18
PLN02672	1082	methionine S-methyltransferase	99.16
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.15
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	99.15
PRK05785	226	hypothetical protein; Provisional	99.14
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	99.14
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.13
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.12
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.11
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.1
PHA03411	279	putative methyltransferase; Provisional	99.06
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.06
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.06
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.06
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.05
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.04
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	99.04
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.04
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.04
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.03
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.03
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.01
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.01
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.99
COG2521	287	Predicted archaeal methyltransferase [General func	98.96
KOG2899	288	consensus Predicted methyltransferase [General fun	98.96
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.96
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.94
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.94
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.94
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.93
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.92
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.91
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.91
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.9
COG2520	341	Predicted methyltransferase [General function pred	98.9
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.9
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.89
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.87
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.85
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.84
KOG2361	264	consensus Predicted methyltransferase [General fun	98.83
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.82
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.81
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.8
PRK00536	262	speE spermidine synthase; Provisional	98.77
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.76
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.75
KOG2730	263	consensus Methylase [General function prediction o	98.75
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.73
KOG3010	261	consensus Methyltransferase [General function pred	98.73
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.72
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.68
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.67
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.64
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.63
PRK04148	134	hypothetical protein; Provisional	98.61
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.57
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.57
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.55
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	98.53
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.53
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.5
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.45
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.45
PRK10742	250	putative methyltransferase; Provisional	98.44
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.43
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.43
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.4
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.39
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.39
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.38
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.38
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.36
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.36
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.35
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.35
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.35
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.22
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.21
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.19
COG4076	252	Predicted RNA methylase [General function predicti	98.19
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.18
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.17
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.15
PF13679	141	Methyltransf_32: Methyltransferase domain	98.13
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.11
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.11
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	98.06
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.04
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.03
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.0
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.99
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.96
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.92
KOG3115	249	consensus Methyltransferase-like protein [General	97.91
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.9
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.88
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.84
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.8
COG3897	218	Predicted methyltransferase [General function pred	97.71
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.7
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.69
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.67
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.67
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.63
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.61
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.59
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.58
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.55
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.54
COG0286	489	HsdM Type I restriction-modification system methyl	97.51
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.49
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.48
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.46
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.45
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.43
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.42
KOG2940	325	consensus Predicted methyltransferase [General fun	97.36
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.29
COG4798	238	Predicted methyltransferase [General function pred	97.22
PHA01634	156	hypothetical protein	97.08
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.07
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.96
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.94
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.89
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.81
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.73
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.71
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.67
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.63
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.58
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.47
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.46
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.36
COG4301	321	Uncharacterized conserved protein [Function unknow	96.34
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.19
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.09
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.07
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.79
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.76
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.68
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.66
PRK13699	227	putative methylase; Provisional	95.49
KOG1227	351	consensus Putative methyltransferase [General func	95.43
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.4
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	95.38
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.34
KOG1331	293	consensus Predicted methyltransferase [General fun	95.31
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.28
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	95.28
PRK11524	284	putative methyltransferase; Provisional	95.06
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.01
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.72
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	94.66
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.63
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	94.63
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	94.53
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	94.51
PRK11524	284	putative methyltransferase; Provisional	94.5
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.5
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	94.37
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	93.85
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	93.68
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.66
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	93.58
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.52
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.5
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.49
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.42
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	93.35
PRK13699	227	putative methylase; Provisional	93.34
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	93.28
COG1565	370	Uncharacterized conserved protein [Function unknow	93.16
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	93.02
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	92.65
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	92.63
KOG2352	482	consensus Predicted spermine/spermidine synthase [	92.36
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	92.3
COG1568	354	Predicted methyltransferases [General function pre	92.26
KOG2912	419	consensus Predicted DNA methylase [Function unknow	92.25
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	92.24
PLN02740	381	Alcohol dehydrogenase-like	92.21
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	92.0
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	91.99
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	91.96
KOG2360	413	consensus Proliferation-associated nucleolar prote	91.82
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	91.8
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	91.77
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	91.65
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	91.63
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	91.61
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	91.48
PTZ00357	1072	methyltransferase; Provisional	91.45
PLN02827	378	Alcohol dehydrogenase-like	91.41
KOG2078	495	consensus tRNA modification enzyme [RNA processing	91.36
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	91.3
COG2961	279	ComJ Protein involved in catabolism of external DN	91.3
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	91.14
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	91.13
KOG3924	419	consensus Putative protein methyltransferase invol	91.09
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	90.91
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	90.88
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	90.66
COG3315	297	O-Methyltransferase involved in polyketide biosynt	90.57
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	90.54
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	90.54
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	90.52
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	90.43
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	89.83
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	89.81
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	89.78
PLN02353	473	probable UDP-glucose 6-dehydrogenase	89.7
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	89.6
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	89.56
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	89.33
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	89.23
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.2
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	89.08
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	88.9
PRK08114	395	cystathionine beta-lyase; Provisional	88.6
COG1255	129	Uncharacterized protein conserved in archaea [Func	88.4
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	88.39
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	88.25
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.16
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	88.13
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	88.01
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	87.93
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	87.85
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	87.75
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	87.69
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	87.69
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	87.61
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	87.59
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	87.57
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	87.37
PRK06940	275	short chain dehydrogenase; Provisional	87.3
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	87.28
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	87.15
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	86.89
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	86.84
COG4017	254	Uncharacterized protein conserved in archaea [Func	86.45
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	86.34
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	86.29
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	86.28
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	86.15
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	85.89
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	85.87
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	85.75
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	85.74
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	85.69
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	85.46
PLN02586	360	probable cinnamyl alcohol dehydrogenase	85.41
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	85.32
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	85.16
PRK08324	681	short chain dehydrogenase; Validated	85.14
PRK07417	279	arogenate dehydrogenase; Reviewed	85.0
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	84.96
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	84.72
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	84.52
TIGR00497	501	hsdM type I restriction system adenine methylase (	84.48
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	84.46
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	84.3
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	84.14
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	84.14
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	84.1
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	83.97
PLN02256	304	arogenate dehydrogenase	83.91
PRK09028	394	cystathionine beta-lyase; Provisional	83.88
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	83.69
PRK10669	558	putative cation:proton antiport protein; Provision	83.68
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	83.62
PRK08306	296	dipicolinate synthase subunit A; Reviewed	83.54
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	83.5
PF03269	177	DUF268: Caenorhabditis protein of unknown function	83.42
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	83.34
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	83.29
COG4121	252	Uncharacterized conserved protein [Function unknow	83.22
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.22
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	83.2
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	82.71
PRK05225	487	ketol-acid reductoisomerase; Validated	82.63
PRK07582	366	cystathionine gamma-lyase; Validated	82.46
PRK03659	601	glutathione-regulated potassium-efflux system prot	82.29
PRK08655	437	prephenate dehydrogenase; Provisional	82.26
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	82.22
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	82.17
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	82.16
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	82.1
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	82.0
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	81.95
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	81.92
PRK08507	275	prephenate dehydrogenase; Validated	81.82
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	81.81
TIGR00853	95	pts-lac PTS system, lactose/cellobiose family IIB	81.78
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	81.73
KOG2920	282	consensus Predicted methyltransferase [General fun	81.61
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	81.25
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	81.13
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	81.13
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	81.02
PRK09496	453	trkA potassium transporter peripheral membrane com	80.72
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	80.68
PLN02494	477	adenosylhomocysteinase	80.6
PRK07063	260	short chain dehydrogenase; Provisional	80.58
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	80.48
PRK06914	280	short chain dehydrogenase; Provisional	80.42
PRK05939	397	hypothetical protein; Provisional	80.42
PRK10083	339	putative oxidoreductase; Provisional	80.25
PRK09496	453	trkA potassium transporter peripheral membrane com	80.15

>PLN02476 O-methyltransferase

Probab=100.00  E-value=2e-45  Score=320.35  Aligned_cols=272  Identities=74%  Similarity=1.114  Sum_probs=234.4

Q ss_pred             Ccccccccceeeeeec------ccchhhhhhccchhhhhhcCCcccCccCCCCceeeeeccccccccccccCCCChhHHH
Q 023645            1 MASSLVANRFAFVLLK------TEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYD   74 (279)
Q Consensus         1 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   74 (279)
                      |+..++-||-.|+--+      +++++..-++..++    +..|..|+.++   +...+++..|+|++++..+.++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~   73 (278)
T PLN02476          1 MSTGLALNRCSFSVCRTATTLLNRPTVSVCRSLKFS----RRLIGNCSIAP---ADPVVVANDDKYGNKQVISLTPRLYD   73 (278)
T ss_pred             CcchhhhhhhhhhhhhhhheeecCCccchhhhhHHH----HHhhcCCCCCC---CCceEEecchhhcccCcccchHHHHH
Confidence            3445556665554433      23333333333332    33344454332   23678999999999999999999999


Q ss_pred             HHHhccCChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCCh
Q 023645           75 YILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA  154 (279)
Q Consensus        75 Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~  154 (279)
                      |+.+..++++.+.++++++.....+.|.+++++++++..++...++++|||||||+|+++++++..++++++|+++|.++
T Consensus        74 Y~~~~~~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~  153 (278)
T PLN02476         74 YVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS  153 (278)
T ss_pred             HHHhcCCCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH
Confidence            99998888999999999998887778999999999999999999999999999999999999999998789999999999


Q ss_pred             hHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          155 RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       155 ~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      +..+.|+++++++|+.++++++.||+.+.++.+..++..++||+||+|+++..|..+++.+.++|+|||+|++||++|+|
T Consensus       154 e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G  233 (278)
T PLN02476        154 NSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHG  233 (278)
T ss_pred             HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCC
Confidence            99999999999999999999999999999987654433468999999999999999999999999999999999999999


Q ss_pred             cccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      .+.++...+..+.++++|++++.++++++++++|+|||+++++|+
T Consensus       234 ~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~  278 (278)
T PLN02476        234 RVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR  278 (278)
T ss_pred             cccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence            999987777888999999999999999999999999999999996

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=100.00  E-value=1.5e-41  Score=285.55  Aligned_cols=200  Identities=45%  Similarity=0.784  Sum_probs=184.7

Q ss_pred             cCChHHHHHHHHHHHccC-CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHH
Q 023645           80 VREPEILRQLREETAGMR-GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE  158 (279)
Q Consensus        80 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~  158 (279)
                      ..+++.|.++++.+.... .+.|.+++.+++++..+++..++++||||||++|++++++++++|++++|+++|.+++..+
T Consensus         5 ~~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~   84 (205)
T PF01596_consen    5 VREPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE   84 (205)
T ss_dssp             TCSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH
T ss_pred             cCCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH
Confidence            457899999999997765 5678899999999999999999999999999999999999999998899999999999999


Q ss_pred             HHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccC
Q 023645          159 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD  238 (279)
Q Consensus       159 ~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~  238 (279)
                      .|+++++++|+.++|+++.||+.+.++.+...+..++||+||+|+++..|..+++.+.++|+|||+|++||++|+|.+.+
T Consensus        85 ~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~  164 (205)
T PF01596_consen   85 IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVAD  164 (205)
T ss_dssp             HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGS
T ss_pred             HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecC
Confidence            99999999999999999999999999988765434689999999999999999999999999999999999999999999


Q ss_pred             cccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          239 QMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      +...++.+.++++|++++.++|+++++++|+|||+++|+||
T Consensus       165 ~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~  205 (205)
T PF01596_consen  165 PDDEDPKTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR  205 (205)
T ss_dssp             TTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred             ccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence            98788888899999999999999999999999999999997

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.9e-39  Score=268.28  Aligned_cols=219  Identities=53%  Similarity=0.891  Sum_probs=204.7

Q ss_pred             cccccCCCChhHHHHHHhc---cCChHHHHHHHHHHHcc--CCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHH
Q 023645           61 SNKQVISVTPPLYDYILRN---VREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSL  135 (279)
Q Consensus        61 ~~~~~~~~~~~l~~Y~~~~---~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~  135 (279)
                      ..++....++.+++|+...   .++++.+.++++.+...  +.+.|.+.+++++++..+++...++++||||+.||++++
T Consensus        10 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL   89 (237)
T KOG1663|consen   10 PDKRLILSDPRLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSAL   89 (237)
T ss_pred             cchhcccccchhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHH
Confidence            3344677888889999876   57899999999999887  578999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHH
Q 023645          136 AIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELL  215 (279)
Q Consensus       136 ~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~  215 (279)
                      .+|.++|++|+|+++|++++..+.+.+.++.+|..++|+++++++.+.++++...++.+.||++|+|+++..|..+++++
T Consensus        90 ~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~  169 (237)
T KOG1663|consen   90 AVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVDADKDNYSNYYERL  169 (237)
T ss_pred             HHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888889999999999999999999999


Q ss_pred             HccCCCCcEEEEeCCCCCCcccCcccCCh-hhHHHH---HHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          216 LQLIRVGGIIVIDNVLWHGKVADQMVNDA-KTISIR---NFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       216 ~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      .+++|+||+|++||++|+|.+++|..... .+..++   ++++.|..||+++++++|+|||+++|+|+
T Consensus       170 l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG~~i~~k~  237 (237)
T KOG1663|consen  170 LRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREALNLNKKLARDPRVYISLLPIGDGITICRKR  237 (237)
T ss_pred             HhhcccccEEEEeccccCCcccCcccCCCcchhhhhhhhhhhhHhccCcceeeEeeeccCceeeeccC
Confidence            99999999999999999998888876554 888899   99999999999999999999999999986

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=7.5e-39  Score=275.91  Aligned_cols=214  Identities=40%  Similarity=0.697  Sum_probs=192.6

Q ss_pred             CCCChhHHHHHHhc---cCChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC
Q 023645           66 ISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP  142 (279)
Q Consensus        66 ~~~~~~l~~Y~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~  142 (279)
                      ...++.+++|+.++   .++++.+.++++++.....+.|.+++.+++++..+++..++++|||||+++|+++++++++++
T Consensus        23 ~~~~~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~  102 (247)
T PLN02589         23 LLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALP  102 (247)
T ss_pred             ccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCC
Confidence            34568899999774   367889999999998887778899999999999999999999999999999999999999998


Q ss_pred             CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC-CCcEEEEEEeCCccchHHHHHHHHccCCC
Q 023645          143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRV  221 (279)
Q Consensus       143 ~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~-~~~fDlI~id~~~~~~~~~l~~~~~~Lk~  221 (279)
                      ++++|+++|.+++..+.|+++++.+|+.++|+++.|++.+.++.+...+. .++||+||+|+++..|..+++.+.++|+|
T Consensus       103 ~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~  182 (247)
T PLN02589        103 EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKV  182 (247)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCC
Confidence            88999999999999999999999999999999999999999988754321 36899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCcccCcccCC-hh-----hHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          222 GGIIVIDNVLWHGKVADQMVND-AK-----TISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       222 gG~lv~dd~~~~g~~~~~~~~~-~~-----~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      ||+|++||++|+|.+.++.... ..     ..++++|++.+.++++++++++|+|||+++++|+
T Consensus       183 GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k~  246 (247)
T PLN02589        183 GGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI  246 (247)
T ss_pred             CeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence            9999999999999998875322 11     1368899999999999999999999999999985

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=100.00  E-value=1e-37  Score=262.24  Aligned_cols=208  Identities=38%  Similarity=0.670  Sum_probs=184.0

Q ss_pred             CCCChhHHHHHHhccC--ChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC
Q 023645           66 ISVTPPLYDYILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE  143 (279)
Q Consensus        66 ~~~~~~l~~Y~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~  143 (279)
                      ..+.+.+.+|+.+..+  .+..+.++++.+.....+  .+.++++++|..++...++++|||||++.|+++++|+..+|.
T Consensus         6 ~~~~~~l~~y~~~~~~~~~~~~~~~~~e~a~~~~~p--i~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~   83 (219)
T COG4122           6 PNMDEDLYDYLEALIPGEPPALLAELEEFARENGVP--IIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPD   83 (219)
T ss_pred             ccchHHHHHHHHhhcccCCchHHHHHHHHhHhcCCC--CCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCC
Confidence            3467889999999874  455667777666654333  334999999999999999999999999999999999999998


Q ss_pred             CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE-cChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCC
Q 023645          144 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG  222 (279)
Q Consensus       144 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g  222 (279)
                      ++++|+||.++++.+.|+++++++|+.++++++. +|+.+.+...    ..++||+||+|+++..|+++|+.+.++|+||
T Consensus        84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~----~~~~fDliFIDadK~~yp~~le~~~~lLr~G  159 (219)
T COG4122          84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL----LDGSFDLVFIDADKADYPEYLERALPLLRPG  159 (219)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc----cCCCccEEEEeCChhhCHHHHHHHHHHhCCC
Confidence            8999999999999999999999999999999999 6998887752    1689999999999999999999999999999


Q ss_pred             cEEEEeCCCCCCcccCcccCChhhH--HHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          223 GIIVIDNVLWHGKVADQMVNDAKTI--SIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       223 G~lv~dd~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      |++++||++|+|.+.++..++..+.  ++++|++++.++|+++++++|+|||+++++|+
T Consensus       160 Gliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~  218 (219)
T COG4122         160 GLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKR  218 (219)
T ss_pred             cEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCceEEEeec
Confidence            9999999999999999865554444  59999999999999999999999999999985

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=2.5e-37  Score=266.24  Aligned_cols=213  Identities=42%  Similarity=0.681  Sum_probs=190.1

Q ss_pred             CCChhHHHHHHhc---cCChHHHHHHHHHHHcc--CCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC
Q 023645           67 SVTPPLYDYILRN---VREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL  141 (279)
Q Consensus        67 ~~~~~l~~Y~~~~---~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~  141 (279)
                      ..++.+++|+.++   .++++.+.++++++...  ..+.|.+.+.+++++..++...++++|||||||+|+++++++..+
T Consensus        11 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~   90 (234)
T PLN02781         11 LKSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALAL   90 (234)
T ss_pred             CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhC
Confidence            3457889999764   46889999999999765  235688999999999999999999999999999999999999998


Q ss_pred             CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCC
Q 023645          142 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRV  221 (279)
Q Consensus       142 ~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~  221 (279)
                      +++++|+++|+++++++.|+++++.+|+.++++++.+|+.+.++.+...+..++||+||+|+.+..|..+++.+.++|+|
T Consensus        91 ~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~  170 (234)
T PLN02781         91 PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKV  170 (234)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCC
Confidence            87889999999999999999999999999999999999999888765443346899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCcccCcccCC-----hhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          222 GGIIVIDNVLWHGKVADQMVND-----AKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       222 gG~lv~dd~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      ||+|++||++|+|.+.++....     ..+.++++|++++.++++++++++|+|||+++++|+
T Consensus       171 GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~  233 (234)
T PLN02781        171 GGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGDGVTLCRRL  233 (234)
T ss_pred             CeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEe
Confidence            9999999999999998875422     135689999999999999999999999999999984

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.77  E-value=1.7e-18  Score=150.61  Aligned_cols=162  Identities=14%  Similarity=0.214  Sum_probs=137.7

Q ss_pred             CceeeeeccccccccccccCCCChhHHHHHHhccCChH-HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEE
Q 023645           47 TTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPE-ILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIE  125 (279)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLE  125 (279)
                      .....++.+|||..+..+.+.+++.. .|.++..++++ .|.+.+......              +...+.+.++++|||
T Consensus        14 ~~~~~~i~~HYDl~n~fy~l~Ld~~~-~Yscayf~~~~~tL~eAQ~~k~~~--------------~~~kl~L~~G~~lLD   78 (283)
T COG2230          14 RRAAENIQAHYDLSNDFYRLFLDPSM-TYSCAYFEDPDMTLEEAQRAKLDL--------------ILEKLGLKPGMTLLD   78 (283)
T ss_pred             cchhhhhhhHhhcchHHHHHhcCCCC-ceeeEEeCCCCCChHHHHHHHHHH--------------HHHhcCCCCCCEEEE
Confidence            35677899999999999999999985 99999877654 566666555432              445566788999999


Q ss_pred             EcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeC--
Q 023645          126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA--  203 (279)
Q Consensus       126 iG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~--  203 (279)
                      ||||+|..++++|+..  +.+|+|+++|+++.+.+++.+...|++.+++++..|..+.         .++||-|+.-.  
T Consensus        79 iGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---------~e~fDrIvSvgmf  147 (283)
T COG2230          79 IGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---------EEPFDRIVSVGMF  147 (283)
T ss_pred             eCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---------ccccceeeehhhH
Confidence            9999999999999987  5899999999999999999999999998899999998755         46699998754  


Q ss_pred             ---CccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          204 ---EKRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       204 ---~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                         ..+.+..||+.+.++|+|||.++++.+..+.
T Consensus       148 Ehvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         148 EHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             HHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence               3677999999999999999999999988655

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.75  E-value=6.9e-18  Score=128.54  Aligned_cols=104  Identities=22%  Similarity=0.391  Sum_probs=87.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||||||+|..+..+++..+ +++|+++|+++++++.|++++...+..++++++++|+ ......     .++||+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~-----~~~~D~   73 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF-----LEPFDL   73 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-----SSCEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-----CCCCCE
Confidence            467999999999999999999655 7899999999999999999998788888999999999 332222     468999


Q ss_pred             EEEeC-Cc------cchHHHHHHHHccCCCCcEEEEeC
Q 023645          199 AFVDA-EK------RMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       199 I~id~-~~------~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |++.. ..      +....+++.+.+.|+|||+++++.
T Consensus        74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99988 32      234567999999999999999974

...

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.75  E-value=3.9e-18  Score=149.86  Aligned_cols=164  Identities=15%  Similarity=0.216  Sum_probs=116.2

Q ss_pred             CceeeeeccccccccccccCCCChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEE
Q 023645           47 TTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIE  125 (279)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLE  125 (279)
                      .....++.+|||.....+.+.+++.+ .|.+...+ +.+.|++++......              +...+.+.++.+|||
T Consensus         4 ~~~~~~i~~hYDl~ndfy~l~Ld~~m-~YS~~~~~~~~~~Le~AQ~~k~~~--------------~~~~~~l~~G~~vLD   68 (273)
T PF02353_consen    4 KQSRENISAHYDLGNDFYRLFLDPTM-KYSCAYFDEGDDTLEEAQERKLDL--------------LCEKLGLKPGDRVLD   68 (273)
T ss_dssp             ---HHHHHHHHTS-HHHHTTTS-TT----S----SSTT--HHHHHHHHHHH--------------HHTTTT--TT-EEEE
T ss_pred             chHHHHHHHHcCCcHHHHHHhcCCCC-CCCCeecCCchhhHHHHHHHHHHH--------------HHHHhCCCCCCEEEE
Confidence            34567788999998888889999985 88888754 456677777665432              444456778999999


Q ss_pred             EcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-
Q 023645          126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-  204 (279)
Q Consensus       126 iG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-  204 (279)
                      ||||+|..+.++++..  +++|+|+++|++..+.+++.++..|+.+++++..+|..+.         ..+||.|+.-.. 
T Consensus        69 iGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~---------~~~fD~IvSi~~~  137 (273)
T PF02353_consen   69 IGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL---------PGKFDRIVSIEMF  137 (273)
T ss_dssp             ES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------S-SEEEEESEG
T ss_pred             eCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc---------CCCCCEEEEEech
Confidence            9999999999999986  5899999999999999999999999999999999998754         459999987543 


Q ss_pred             ----ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 023645          205 ----KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (279)
Q Consensus       205 ----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~  236 (279)
                          ...+..+|+.+.++|+|||.++++.+......
T Consensus       138 Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~  173 (273)
T PF02353_consen  138 EHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPP  173 (273)
T ss_dssp             GGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HH
T ss_pred             hhcChhHHHHHHHHHHHhcCCCcEEEEEeccccccc
Confidence                46788999999999999999999988765543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.72  E-value=4.2e-16  Score=127.05  Aligned_cols=150  Identities=24%  Similarity=0.298  Sum_probs=117.6

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .+.++.-.+....+...++.+++|||||+|..++.++...| .++++++|.++++++..++|.++.|.+ +++++.|++.
T Consensus        17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap   94 (187)
T COG2242          17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAP   94 (187)
T ss_pred             CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccch
Confidence            44555555555666777889999999999999999995554 899999999999999999999999965 5999999999


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCC
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDER  261 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (279)
                      +.++.+      .+||.||+.+. ......++.++..|||||.||++-+.....              ....+.+.+...
T Consensus        95 ~~L~~~------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~--------------~~a~~~~~~~g~  153 (187)
T COG2242          95 EALPDL------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETL--------------AKALEALEQLGG  153 (187)
T ss_pred             HhhcCC------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHH--------------HHHHHHHHHcCC
Confidence            988753      38999999998 888999999999999999999987654322              223334433333


Q ss_pred             eEEEEeecCCceE
Q 023645          262 VSISMVPIGDGMT  274 (279)
Q Consensus       262 ~~~~~lp~~~G~~  274 (279)
                      .+++.+-+..|.-
T Consensus       154 ~ei~~v~is~~~~  166 (187)
T COG2242         154 REIVQVQISRGKP  166 (187)
T ss_pred             ceEEEEEeeccee
Confidence            3666666655543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.70  E-value=1.4e-15  Score=128.06  Aligned_cols=112  Identities=21%  Similarity=0.429  Sum_probs=96.4

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      .....++.+|||+|||+|..+..+++..++.++|+++|+++++++.++++++..++.++++++.+|+.+.++..     .
T Consensus        35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~-----~  109 (198)
T PRK00377         35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI-----N  109 (198)
T ss_pred             HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc-----C
Confidence            34456778999999999999999998776568999999999999999999999886667999999998766543     4


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ++||.||++.....+..+++.+.+.|+|||.++++.+
T Consensus       110 ~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        110 EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence            6899999987777788899999999999999998655

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.69  E-value=1.8e-15  Score=126.19  Aligned_cols=118  Identities=25%  Similarity=0.319  Sum_probs=96.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +.+.....+...+...++.+|||+|||+|..+..+++..+ +++|+++|+++++++.++++++..++. +++++.+|+..
T Consensus        15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~   92 (187)
T PRK08287         15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI   92 (187)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh
Confidence            3444444444455556778999999999999999998876 689999999999999999999988875 59999998742


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .   +     .++||+|+++.....+..+++.+.+.|+|||++++..+
T Consensus        93 ~---~-----~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287         93 E---L-----PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             h---c-----CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence            2   1     36899999987766778889999999999999999654

>PRK04457 spermidine synthase; Provisional

Probab=99.68  E-value=3e-15  Score=131.16  Aligned_cols=112  Identities=20%  Similarity=0.258  Sum_probs=93.3

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (279)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~  190 (279)
                      +..+....++++|||||||+|.++.++++..| +.+++++|+++++++.|++++...+..++++++.+|+.+.++..   
T Consensus        58 ~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~---  133 (262)
T PRK04457         58 MGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH---  133 (262)
T ss_pred             HHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC---
Confidence            33333345678999999999999999999887 78999999999999999999876555568999999999887654   


Q ss_pred             CCCCcEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 023645          191 GEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                        .++||+|++|....       ...++++.+.+.|+|||+++++
T Consensus       134 --~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        134 --RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             --CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence              46899999986422       1368999999999999999995

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.68  E-value=1e-15  Score=118.32  Aligned_cols=109  Identities=25%  Similarity=0.401  Sum_probs=91.7

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      .....+..+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..+.. +++++.+|+.+.++..     .
T Consensus        14 ~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~   86 (124)
T TIGR02469        14 KLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS-----L   86 (124)
T ss_pred             HcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh-----c
Confidence            33444567999999999999999999887 589999999999999999999988776 5899999876433332     4


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ++||.|+++........+++.+.+.|+|||.+++.-
T Consensus        87 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        87 PEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            689999998877777889999999999999999863

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.67  E-value=1.2e-15  Score=129.83  Aligned_cols=118  Identities=24%  Similarity=0.361  Sum_probs=97.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ..+.|.....+...+...++.+|||||||+|+.+..+++..+.+++|+++|+++++++.++++++..+.. +++++++|+
T Consensus        58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~  136 (212)
T PRK13942         58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDG  136 (212)
T ss_pred             EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCc
Confidence            3466777777777777888899999999999999999988765689999999999999999999988875 599999998


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .+..+.      .++||+|++++......   +.+.+.|+|||.+++.
T Consensus       137 ~~~~~~------~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        137 TLGYEE------NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             ccCCCc------CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence            754321      47899999987655443   4567789999999884

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.66  E-value=2e-15  Score=125.10  Aligned_cols=102  Identities=23%  Similarity=0.389  Sum_probs=87.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||+|||+|..+..++...+ +++|+++|.++++++.++++.++.++.+ ++++++|+.+...       .++|
T Consensus        40 ~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~-------~~~f  110 (181)
T TIGR00138        40 YLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQH-------EEQF  110 (181)
T ss_pred             hcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccc-------cCCc
Confidence            34578999999999999999987665 6899999999999999999999988864 9999999976421       4789


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+|++++ ..++..+++.+.++|+|||.+++.
T Consensus       111 D~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       111 DVITSRA-LASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             cEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence            9999987 566778899999999999999974

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.66  E-value=7.6e-16  Score=131.71  Aligned_cols=113  Identities=19%  Similarity=0.263  Sum_probs=97.6

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ......++.+|||+|||||..+..+++..+ .++|+++|+|+.|++.|++.....+..+ ++++++|+.+. |.     +
T Consensus        45 ~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-Pf-----~  116 (238)
T COG2226          45 SLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-PF-----P  116 (238)
T ss_pred             HhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-CC-----C
Confidence            333334789999999999999999999988 8999999999999999999999988877 99999999754 32     2


Q ss_pred             CCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          193 ASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       193 ~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      +.+||+|.+...   ..+....|+++.|+|||||.+++-+..-+
T Consensus       117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p  160 (238)
T COG2226         117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            789999998765   56788999999999999999998777654

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.66  E-value=1.4e-15  Score=129.62  Aligned_cols=116  Identities=22%  Similarity=0.404  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      ..|.....+...+...++.+|||||||+|+.+..+++..+.+++|+++|+++++++.|+++++..++. +++++++|+.+
T Consensus        61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~  139 (215)
T TIGR00080        61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQ  139 (215)
T ss_pred             chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCccc
Confidence            44555555666667778899999999999999999998765678999999999999999999999884 59999999876


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .++.      ..+||+|++++.....   .+.+.+.|+|||.+++.
T Consensus       140 ~~~~------~~~fD~Ii~~~~~~~~---~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       140 GWEP------LAPYDRIYVTAAGPKI---PEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCcc------cCCCCEEEEcCCcccc---cHHHHHhcCcCcEEEEE
Confidence            4332      3689999998765544   34577889999999984

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.66  E-value=1.4e-15  Score=128.76  Aligned_cols=116  Identities=22%  Similarity=0.308  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH
Q 023645          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (279)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (279)
                      +.....+...+...++.+|||||||+|+.+..+++.++..++|+++|+++++++.|+++++..++.++++++.+|+.+.+
T Consensus        58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~  137 (205)
T PRK13944         58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL  137 (205)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence            44444444445556678999999999999999999876568999999999999999999999888777999999997644


Q ss_pred             HHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       185 ~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +.      .++||+|+++......   .+.+.+.|+|||.|++..
T Consensus       138 ~~------~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        138 EK------HAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             cc------CCCccEEEEccCcchh---hHHHHHhcCcCcEEEEEE
Confidence            32      4689999999775543   356788999999999854

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=1.1e-15  Score=129.89  Aligned_cols=138  Identities=20%  Similarity=0.318  Sum_probs=118.7

Q ss_pred             CChhHHHHHHhccCChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEE
Q 023645           68 VTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCL  147 (279)
Q Consensus        68 ~~~~l~~Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v  147 (279)
                      +.+.+.+|++.                 +++....+.|....++.....+.++.+|+|.|+|+|..+.+|+.++.+.++|
T Consensus        60 l~p~~~d~~~~-----------------~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v  122 (256)
T COG2519          60 LKPTPEDYLLS-----------------MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHV  122 (256)
T ss_pred             eCCCHHHHHHh-----------------CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceE
Confidence            55566677765                 4555556788888888899999999999999999999999999998878999


Q ss_pred             EEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          148 VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       148 ~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +++|+.++.++.|++|++..++.+++++..+|..+...       +..||.||+|.+.  ..++++.+...|+|||.+++
T Consensus       123 ~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~vDav~LDmp~--PW~~le~~~~~Lkpgg~~~~  193 (256)
T COG2519         123 TTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDVDAVFLDLPD--PWNVLEHVSDALKPGGVVVV  193 (256)
T ss_pred             EEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------ccccCEEEEcCCC--hHHHHHHHHHHhCCCcEEEE
Confidence            99999999999999999999999999999999987654       4599999999764  44889999999999999998


Q ss_pred             eCCC
Q 023645          228 DNVL  231 (279)
Q Consensus       228 dd~~  231 (279)
                      -...
T Consensus       194 y~P~  197 (256)
T COG2519         194 YSPT  197 (256)
T ss_pred             EcCC
Confidence            5444

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.65  E-value=8.5e-16  Score=132.19  Aligned_cols=115  Identities=21%  Similarity=0.246  Sum_probs=84.1

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .+....++.+|||+|||||..+..+++..++.++|+++|+|++|++.|++..+..+.. +++++++|+.+. +.-     
T Consensus        41 ~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p~~-----  113 (233)
T PF01209_consen   41 KLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-PFP-----  113 (233)
T ss_dssp             HHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S------
T ss_pred             hccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-cCC-----
Confidence            3445567789999999999999999998876789999999999999999999988876 699999999764 322     


Q ss_pred             CCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          193 ASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       193 ~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      +++||.|++...   ..+....+++++++|||||.+++-+...+.
T Consensus       114 d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~  158 (233)
T PF01209_consen  114 DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR  158 (233)
T ss_dssp             TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred             CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence            689999998765   456788999999999999999987665443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.64  E-value=2.8e-15  Score=124.70  Aligned_cols=100  Identities=20%  Similarity=0.368  Sum_probs=87.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||+|||+|..++.++...+ +++|+++|.++++++.|+++.+..++++ ++++++|+.+...       .++||+
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-------~~~fDl  115 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-------EEKFDV  115 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-------CCCccE
Confidence            368999999999999999998766 7899999999999999999999999876 9999999976321       368999


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+++. ...+..+++.+.+.|+|||.+++-
T Consensus       116 V~~~~-~~~~~~~l~~~~~~LkpGG~lv~~  144 (187)
T PRK00107        116 VTSRA-VASLSDLVELCLPLLKPGGRFLAL  144 (187)
T ss_pred             EEEcc-ccCHHHHHHHHHHhcCCCeEEEEE
Confidence            99976 356778999999999999999985

>PLN03075 nicotianamine synthase; Provisional

Probab=99.63  E-value=3.3e-15  Score=131.46  Aligned_cols=119  Identities=18%  Similarity=0.195  Sum_probs=95.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccC-HHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH-hCCCCcEEEEEcChh
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYER-AGVSHKVKIKHGLAA  181 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G-~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~g~~~~v~~~~gd~~  181 (279)
                      .+-++.++..+... ++++|+|||||.| ++++.++....++++++++|.++++++.|++.++. .++.++++|+.+|+.
T Consensus       109 ~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~  187 (296)
T PLN03075        109 SKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM  187 (296)
T ss_pred             HHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence            34455555555554 8899999999955 55666665544488999999999999999999965 889889999999998


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeC----CccchHHHHHHHHccCCCCcEEEEeC
Q 023645          182 DSLKALILNGEASSYDFAFVDA----EKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~----~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +..+.      .++||+||+++    .+.....+++.+.+.|+|||++++..
T Consensus       188 ~~~~~------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        188 DVTES------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             hcccc------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            74322      37899999985    25788899999999999999999976

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.63  E-value=2.9e-15  Score=120.64  Aligned_cols=109  Identities=17%  Similarity=0.320  Sum_probs=91.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      +..+|||+|||+|..+..+++...++++++|+|+++++++.|++.++..+.. +++++++|+.+ ++...    .++||+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~----~~~~D~   76 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL----EEKFDI   76 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS----STTEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc----CCCeeE
Confidence            4679999999999999999965555789999999999999999999999987 69999999987 43210    268999


Q ss_pred             EEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       199 I~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      |++...   ..+....++.+.+.|++||.+++.+..+.
T Consensus        77 I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~  114 (152)
T PF13847_consen   77 IISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHN  114 (152)
T ss_dssp             EEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHS
T ss_pred             EEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChH
Confidence            999865   34456789999999999999999887643

...

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.62  E-value=4.9e-15  Score=121.68  Aligned_cols=109  Identities=22%  Similarity=0.361  Sum_probs=89.6

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHh
Q 023645          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (279)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~  189 (279)
                      +|...+...+..+|||+|||+|..++.+++..+ ..+|+++|+++.+++.++++++.+++.+ ++++.+|..+.++    
T Consensus        22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~----   95 (170)
T PF05175_consen   22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP----   95 (170)
T ss_dssp             HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC----
T ss_pred             HHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc----
Confidence            444545545788999999999999999999876 6689999999999999999999999987 9999999876543    


Q ss_pred             CCCCCcEEEEEEeCCcc--------chHHHHHHHHccCCCCcEEEE
Q 023645          190 NGEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       190 ~~~~~~fDlI~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                         .++||+|+++++..        ....+++.+.++|+|||.+++
T Consensus        96 ---~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen   96 ---DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             ---TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence               48999999997621        256778888999999998865

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.62  E-value=2.5e-14  Score=120.10  Aligned_cols=123  Identities=23%  Similarity=0.349  Sum_probs=99.5

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      .+.+.++...++...+...++.+|||+|||+|..+..+++..+ +++|+++|+++++++.++++++..+.. +++++.+|
T Consensus        21 ~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d   98 (196)
T PRK07402         21 IPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGS   98 (196)
T ss_pred             CCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECc
Confidence            3455666666666666666778999999999999999987665 689999999999999999999988875 59999999


Q ss_pred             hhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       180 ~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +.+.++.+     ...+|.++++.. .....+++.+.+.|+|||.+++...
T Consensus        99 ~~~~~~~~-----~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402         99 APECLAQL-----APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             hHHHHhhC-----CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            97655433     345788888764 3457889999999999999999754

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.61  E-value=1e-14  Score=125.73  Aligned_cols=132  Identities=21%  Similarity=0.255  Sum_probs=101.7

Q ss_pred             HHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC
Q 023645           92 ETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH  171 (279)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~  171 (279)
                      .+..+++....+.+....++...+.+.++.+|||.|+|+|..|.++++.+.+.|+|+++|.+++.++.|+++++.+|+.+
T Consensus        13 ~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~   92 (247)
T PF08704_consen   13 WTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDD   92 (247)
T ss_dssp             HHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred             HHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCC
Confidence            34446666667889999999999999999999999999999999999998878999999999999999999999999998


Q ss_pred             cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccC-CCCcEEEEe
Q 023645          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI-RVGGIIVID  228 (279)
Q Consensus       172 ~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~L-k~gG~lv~d  228 (279)
                      ++++.++|+.+.-.   ..+.+..+|.||+|-+..+  .++..+.+.| ++||.|++-
T Consensus        93 ~v~~~~~Dv~~~g~---~~~~~~~~DavfLDlp~Pw--~~i~~~~~~L~~~gG~i~~f  145 (247)
T PF08704_consen   93 NVTVHHRDVCEEGF---DEELESDFDAVFLDLPDPW--EAIPHAKRALKKPGGRICCF  145 (247)
T ss_dssp             TEEEEES-GGCG-----STT-TTSEEEEEEESSSGG--GGHHHHHHHE-EEEEEEEEE
T ss_pred             CceeEecceecccc---cccccCcccEEEEeCCCHH--HHHHHHHHHHhcCCceEEEE
Confidence            99999999964211   0001468999999987544  6678888999 899999983

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.60  E-value=1.1e-14  Score=122.88  Aligned_cols=122  Identities=19%  Similarity=0.263  Sum_probs=95.9

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      .+.+++....+...+..  ++.+|||+|||+|..+..+++..+ +.+|+++|+++++++.|++++...++. +++++++|
T Consensus        23 ~~~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d   98 (202)
T PRK00121         23 WPRLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGD   98 (202)
T ss_pred             chhhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecC
Confidence            34555666666666655  667999999999999999998876 679999999999999999999888874 59999999


Q ss_pred             hhhHHHHHHhCCCCCcEEEEEEeCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 023645          180 AADSLKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       180 ~~~~l~~~~~~~~~~~fDlI~id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +.+.++...   .+++||.|++.....           ....+++.+.++|+|||++++.
T Consensus        99 ~~~~l~~~~---~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121         99 AVEVLLDMF---PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             HHHHHHHHc---CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence            944444221   146899999864211           1567899999999999999984

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=8.8e-15  Score=121.83  Aligned_cols=118  Identities=26%  Similarity=0.412  Sum_probs=99.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE
Q 023645           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (279)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~  177 (279)
                      .+.....|.....+.+++...++.+|||||||+||.+..|++..   ++|+++|..++..+.|+++++..|+.+ |.+++
T Consensus        51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~  126 (209)
T COG2518          51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRH  126 (209)
T ss_pred             CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEE
Confidence            33445677777778888888999999999999999999999875   499999999999999999999999987 99999


Q ss_pred             cChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          178 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       178 gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +|...-.+.      ..+||.|++.+.....+.   .+...|++||.+++-
T Consensus       127 gDG~~G~~~------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P  168 (209)
T COG2518         127 GDGSKGWPE------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP  168 (209)
T ss_pred             CCcccCCCC------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence            999765543      489999999987655444   456778999999983

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.60  E-value=3.2e-14  Score=133.32  Aligned_cols=158  Identities=22%  Similarity=0.250  Sum_probs=116.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHH
Q 023645          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (279)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (279)
                      ...++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.++++++..|+.+ ++++++|+.+....
T Consensus       240 ~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~  318 (434)
T PRK14901        240 SAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLEL  318 (434)
T ss_pred             HHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccc
Confidence            34445555566678899999999999999999987656899999999999999999999999875 99999998754321


Q ss_pred             HHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCCCcccCccc
Q 023645          187 LILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV  241 (279)
Q Consensus       187 ~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~  241 (279)
                      ...  ..++||.|++|++...                         ....++.+.++|||||.|+...+.......    
T Consensus       319 ~~~--~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~En----  392 (434)
T PRK14901        319 KPQ--WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAEN----  392 (434)
T ss_pred             ccc--ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhH----
Confidence            100  0368999999975211                         246788889999999999987765443211    


Q ss_pred             CChhhHHHHHHHHHhhhCCCeEEE-----Eeec---CCceEEEEE
Q 023645          242 NDAKTISIRNFNKNLMEDERVSIS-----MVPI---GDGMTICQK  278 (279)
Q Consensus       242 ~~~~~~~~~~~~~~l~~~~~~~~~-----~lp~---~~G~~i~~~  278 (279)
                             .......+..+|+++..     ++|-   .||+-+|+.
T Consensus       393 -------e~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l  430 (434)
T PRK14901        393 -------EAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVL  430 (434)
T ss_pred             -------HHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEE
Confidence                   12233444567777654     4554   599999975

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.59  E-value=1.5e-14  Score=126.37  Aligned_cols=102  Identities=22%  Similarity=0.326  Sum_probs=87.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++++++.|+++.+..++.++++++++|+.+..+..     +++||+
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-----~~~fD~  115 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-----ETPVDL  115 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-----CCCCCE
Confidence            4679999999999999999985   46999999999999999999998888778999999997754332     578999


Q ss_pred             EEEeCC---ccchHHHHHHHHccCCCCcEEEEe
Q 023645          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       199 I~id~~---~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |++...   ..+...+++.+.++|||||++++-
T Consensus       116 V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        116 ILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             EEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            998764   345678899999999999999874

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.59  E-value=2.5e-14  Score=122.98  Aligned_cols=113  Identities=19%  Similarity=0.312  Sum_probs=92.1

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (279)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~  190 (279)
                      +...+...++.+|||+|||+|..+..+++..+++++|+++|+++++++.++++++..++ ++++++++|+.+..  .   
T Consensus        37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~---  110 (231)
T TIGR02752        37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP--F---  110 (231)
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC--C---
Confidence            33444555678999999999999999999876578999999999999999999987777 46999999986532  1   


Q ss_pred             CCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          191 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       191 ~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                       .+++||+|++...   ..++...++.+.++|+|||.+++.+.
T Consensus       111 -~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       111 -DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             -CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence             1578999998653   44567889999999999999987554

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.58  E-value=2.7e-14  Score=125.21  Aligned_cols=114  Identities=11%  Similarity=0.090  Sum_probs=89.7

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH--hCCCCcEEEEEcChhhHHHHHHhCC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGVSHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g~~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      .....++.+|||+|||+|..+..+++..++.++|+|+|+|++|++.|+++...  .+...+++++++|+.+. +.     
T Consensus        68 ~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~-----  141 (261)
T PLN02233         68 WSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PF-----  141 (261)
T ss_pred             HhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CC-----
Confidence            34455678999999999999999998765567999999999999999876542  22334699999998653 21     


Q ss_pred             CCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          192 EASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       192 ~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      .+++||+|++...   ..+...+++++.+.|||||.+++-+...+
T Consensus       142 ~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~  186 (261)
T PLN02233        142 DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS  186 (261)
T ss_pred             CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence            1578999988643   44677899999999999999998776543

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.58  E-value=8.9e-14  Score=123.29  Aligned_cols=118  Identities=17%  Similarity=0.245  Sum_probs=94.3

Q ss_pred             CCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645          103 VSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (279)
Q Consensus       103 ~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (279)
                      ..+++..++...+.    ..++.+|||+|||+|..+..+++..+ +.+|+++|+|+.+++.|+++++..++.++++++++
T Consensus       101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~  179 (284)
T TIGR03533       101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS  179 (284)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            45566666665443    12457999999999999999999876 68999999999999999999999998878999999


Q ss_pred             ChhhHHHHHHhCCCCCcEEEEEEeCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 023645          179 LAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       179 d~~~~l~~~~~~~~~~~fDlI~id~~~----------------------------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+.+.++       .++||+|+++++.                            ..+..++..+.+.|+|||.++++
T Consensus       180 D~~~~~~-------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e  250 (284)
T TIGR03533       180 DLFAALP-------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE  250 (284)
T ss_pred             chhhccC-------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9865432       3579999998641                            11345677778999999999985

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.57  E-value=1.3e-14  Score=122.67  Aligned_cols=117  Identities=23%  Similarity=0.377  Sum_probs=91.3

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ....|..-..+..++...++.+|||||||+|+.+..++....+.++|+++|.++...+.|+++++..+.. +++++++|.
T Consensus        54 ~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg  132 (209)
T PF01135_consen   54 TISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDG  132 (209)
T ss_dssp             EE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-G
T ss_pred             echHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcch
Confidence            3455666666666777888999999999999999999998776789999999999999999999999987 599999998


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ....+.      .++||.|++.+.....+.   .+...|++||.||+
T Consensus       133 ~~g~~~------~apfD~I~v~~a~~~ip~---~l~~qL~~gGrLV~  170 (209)
T PF01135_consen  133 SEGWPE------EAPFDRIIVTAAVPEIPE---ALLEQLKPGGRLVA  170 (209)
T ss_dssp             GGTTGG------G-SEEEEEESSBBSS--H---HHHHTEEEEEEEEE
T ss_pred             hhcccc------CCCcCEEEEeeccchHHH---HHHHhcCCCcEEEE
Confidence            765443      478999999987665443   46678999999998

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.57  E-value=1.1e-13  Score=129.32  Aligned_cols=126  Identities=19%  Similarity=0.292  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +.....+++..++...++.+|||+|||+|..|..++..++.+++|+++|+++.+++.+++++++.|+.+ ++++++|+.+
T Consensus       221 ~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~  299 (431)
T PRK14903        221 VQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAER  299 (431)
T ss_pred             EECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhh
Confidence            344445566666677788899999999999999999988667899999999999999999999999864 9999999875


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          183 SLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      .....     .++||.|++|++..                         ...+.++.+.++|||||.+++..+.+.-
T Consensus       300 l~~~~-----~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  371 (431)
T PRK14903        300 LTEYV-----QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK  371 (431)
T ss_pred             hhhhh-----hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence            43222     46899999997521                         1245688889999999999998776543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.57  E-value=7.8e-14  Score=131.17  Aligned_cols=124  Identities=22%  Similarity=0.291  Sum_probs=99.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +......++...+...++.+|||+|||+|..+..+++.+++.++|+++|+++++++.+++++++.|+.+ ++++++|+.+
T Consensus       234 ~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~  312 (444)
T PRK14902        234 IQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARK  312 (444)
T ss_pred             EEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCccc
Confidence            344455566666666778899999999999999999987546899999999999999999999999875 9999999976


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      ....+     .++||+|++|++...                         ...+++.+.++|||||.++...+.+
T Consensus       313 ~~~~~-----~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        313 VHEKF-----AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             ccchh-----cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            54333     368999999975211                         1356888899999999999876654

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.56  E-value=3.2e-14  Score=109.14  Aligned_cols=101  Identities=22%  Similarity=0.402  Sum_probs=85.1

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      .+|||+|||+|..+..+++..  ..+++++|+++..++.+++++...++.++++++++|+.+..+..    ..++||+|+
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~~~~D~Iv   75 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL----PDGKFDLIV   75 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC----TTT-EEEEE
T ss_pred             CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc----cCceeEEEE
Confidence            489999999999999999886  47999999999999999999999999888999999998765332    268999999


Q ss_pred             EeCCcc-----------chHHHHHHHHccCCCCcEEEE
Q 023645          201 VDAEKR-----------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       201 id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .+.+..           .+..+++.+.++|+|||++++
T Consensus        76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence            997622           246789999999999999886

...

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.55  E-value=4e-14  Score=121.30  Aligned_cols=116  Identities=19%  Similarity=0.288  Sum_probs=98.9

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHH
Q 023645          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (279)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (279)
                      .+-+|...+......+|||+|||+|..++.+++..+ ..++++||+++++.+.|+++++.+++.++++++++|+.++.+.
T Consensus        32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~  110 (248)
T COG4123          32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA  110 (248)
T ss_pred             HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence            455677777777788999999999999999999877 4899999999999999999999999999999999999887765


Q ss_pred             HHhCCCCCcEEEEEEeCCc---------------------cchHHHHHHHHccCCCCcEEEE
Q 023645          187 LILNGEASSYDFAFVDAEK---------------------RMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       187 ~~~~~~~~~fDlI~id~~~---------------------~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ..    ..+||+|+++++.                     ....++++.+.++||+||.+.+
T Consensus       111 ~~----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~  168 (248)
T COG4123         111 LV----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF  168 (248)
T ss_pred             cc----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence            52    3579999998751                     1245677888899999999988

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.55  E-value=1.2e-13  Score=117.44  Aligned_cols=114  Identities=23%  Similarity=0.334  Sum_probs=93.9

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      ...+.....+..++...++.+|||+|||+|+.+..+++..   ++++++|.++++++.++++++..++.+ ++++++|+.
T Consensus        61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~  136 (212)
T PRK00312         61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGW  136 (212)
T ss_pred             eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcc
Confidence            4567777777777777788999999999999999888764   489999999999999999999988865 999999986


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +.++.      .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       137 ~~~~~------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        137 KGWPA------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP  174 (212)
T ss_pred             cCCCc------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence            54321      3789999998865544   45678899999999985

>PLN02244 tocopherol O-methyltransferase

Probab=99.55  E-value=5.8e-14  Score=127.61  Aligned_cols=107  Identities=19%  Similarity=0.175  Sum_probs=90.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++..  +++|+|+|+++.+++.++++.+..++.++++++++|+.+.. .     .+++||
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~-----~~~~FD  188 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-F-----EDGQFD  188 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-C-----CCCCcc
Confidence            456799999999999999999876  47999999999999999999998888778999999987531 1     157999


Q ss_pred             EEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       198 lI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      +|++...   ..+...+++++.++|||||.+++.+...
T Consensus       189 ~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~  226 (340)
T PLN02244        189 LVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCH  226 (340)
T ss_pred             EEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            9998543   3456789999999999999999976543

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.55  E-value=9.3e-14  Score=124.35  Aligned_cols=118  Identities=17%  Similarity=0.240  Sum_probs=93.4

Q ss_pred             CCHHHHHHHHHHHh-h-c--CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645          103 VSPDQAQLLAMLVQ-I-L--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (279)
Q Consensus       103 ~~~~~~~~l~~l~~-~-~--~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (279)
                      ..+++..++...+. . .  ++.+|||+|||+|.+++.++...+ +.+|+++|+|+.+++.|+++++..++.++++++++
T Consensus       113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~  191 (307)
T PRK11805        113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIES  191 (307)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence            44556666555443 1 1  236899999999999999999876 68999999999999999999999998878999999


Q ss_pred             ChhhHHHHHHhCCCCCcEEEEEEeCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 023645          179 LAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       179 d~~~~l~~~~~~~~~~~fDlI~id~~~----------------------------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+.+.++       .++||+|+++++.                            ..+..+++.+.+.|+|||.+++.
T Consensus       192 D~~~~l~-------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        192 DLFAALP-------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             chhhhCC-------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9865432       3579999998541                            11345678888999999999985

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.54  E-value=3.8e-14  Score=119.66  Aligned_cols=122  Identities=18%  Similarity=0.295  Sum_probs=96.8

Q ss_pred             CCHHHHHHHHHHHhh---cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          103 VSPDQAQLLAMLVQI---LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~---~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      +.+....++...+..   .++.+|||||||.|..+..||+.   ++.|+|+|+++++++.|+....+.++.  +++.+..
T Consensus        40 ~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~  114 (243)
T COG2227          40 INPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQAT  114 (243)
T ss_pred             eccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhh
Confidence            344444444444443   57889999999999999999986   589999999999999999999988875  7788777


Q ss_pred             hhhHHHHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          180 AADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       180 ~~~~l~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      +.+....      .++||+|++-..   ..+...++..+.+++||||.+++..+..+-.
T Consensus       115 ~edl~~~------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k  167 (243)
T COG2227         115 VEDLASA------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK  167 (243)
T ss_pred             HHHHHhc------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence            7655432      379999998643   4556789999999999999999988875443

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.53  E-value=1.1e-13  Score=118.53  Aligned_cols=103  Identities=17%  Similarity=0.247  Sum_probs=88.1

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      ++|||||||+|..+..+++..+ +++++++|+++++++.++++++..|+.++++++.+|+.+...       .++||+|+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------~~~fD~I~   72 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------PDTYDLVF   72 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------CCCCCEee
Confidence            4799999999999999998876 679999999999999999999999998899999999854311       36899998


Q ss_pred             EeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          201 VDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       201 id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +...   ..+...+++.+.++|+|||.+++.++.
T Consensus        73 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       73 GFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             hHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            6432   345678999999999999999998875

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.53  E-value=3.4e-14  Score=130.85  Aligned_cols=161  Identities=16%  Similarity=0.206  Sum_probs=115.5

Q ss_pred             cCCCCceeeeeccccccccccccCCCChhHHHHHHhccCChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCE
Q 023645           43 KNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQR  122 (279)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  122 (279)
                      .|+......++..|||.....+.+.+++.+ .|.+....+.+.+.+.+.....              .+...+...++.+
T Consensus       106 ~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m-~ys~g~~~~~~~L~~Aq~~k~~--------------~l~~~l~l~~g~r  170 (383)
T PRK11705        106 LQSKKRAWIVGKEHYDLGNDLFEAMLDPRM-QYSCGYWKDADTLEEAQEAKLD--------------LICRKLQLKPGMR  170 (383)
T ss_pred             cCChhhHHHhhhhhcCCcHHHHHHhcCCCC-cccccccCCCCCHHHHHHHHHH--------------HHHHHhCCCCCCE
Confidence            455666788888999877666666676654 5555444333334443333221              1223334557789


Q ss_pred             EEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEe
Q 023645          123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD  202 (279)
Q Consensus       123 VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id  202 (279)
                      |||||||+|..+..+++..  +++|+++|+|+++++.|+++.+  ++  .+++..+|..+.         +++||.|++.
T Consensus       171 VLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---------~~~fD~Ivs~  235 (383)
T PRK11705        171 VLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---------NGQFDRIVSV  235 (383)
T ss_pred             EEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---------CCCCCEEEEe
Confidence            9999999999999999875  4799999999999999999874  33  378888887532         4689999865


Q ss_pred             CC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          203 AE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       203 ~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ..     ...+..+++.+.++|||||.+++..+..+
T Consensus       236 ~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~  271 (383)
T PRK11705        236 GMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN  271 (383)
T ss_pred             CchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            43     34467899999999999999999876543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.53  E-value=2.5e-13  Score=127.75  Aligned_cols=123  Identities=18%  Similarity=0.236  Sum_probs=97.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +......+...++...++.+|||+|||+|..+..+++.++..++|+++|+++++++.++++++..|+. +++++++|+.+
T Consensus       234 vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~  312 (445)
T PRK14904        234 VQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARS  312 (445)
T ss_pred             EeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccc
Confidence            33344445555556667789999999999999999988765679999999999999999999999986 59999999876


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          183 SLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ..+       ..+||.|++|++..                         .....+..+.++|+|||.+++..+...
T Consensus       313 ~~~-------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        313 FSP-------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             ccc-------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            432       46899999986421                         123478888999999999999876554

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.53  E-value=3.1e-13  Score=118.64  Aligned_cols=121  Identities=16%  Similarity=0.224  Sum_probs=95.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHH
Q 023645          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (279)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (279)
                      ...+...++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.|+.+ ++++++|+..... 
T Consensus        59 ~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~-  136 (264)
T TIGR00446        59 SSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGA-  136 (264)
T ss_pred             HHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhh-
Confidence            33344445555677899999999999999999988756899999999999999999999999864 9999999865422 


Q ss_pred             HHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          187 LILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       187 ~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      .     .+.||.|++|++..                         ...+.++.+.++|||||+|+...+....
T Consensus       137 ~-----~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       137 A-----VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             h-----ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            1     35699999997521                         1235788888999999999987665433

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.53  E-value=1.4e-13  Score=121.32  Aligned_cols=114  Identities=16%  Similarity=0.298  Sum_probs=93.0

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ....++.+|||||||+|..+..+++..+..++|+++|+++++++.|+++....+.. +++++.+|+.+. +.     .++
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~~-----~~~  145 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-PV-----ADN  145 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-CC-----CCC
Confidence            34567889999999999999888877665679999999999999999999888875 689999998643 11     146


Q ss_pred             cEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          195 SYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       195 ~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      .||+|+++..   ..+....++++.++|||||.+++.++...+.
T Consensus       146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~  189 (272)
T PRK11873        146 SVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE  189 (272)
T ss_pred             ceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC
Confidence            8999998754   3355678999999999999999988765543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.53  E-value=8.2e-14  Score=117.14  Aligned_cols=100  Identities=13%  Similarity=0.198  Sum_probs=81.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||+|||+|..+.++++.   +.+|+++|+|+++++.+++..+..++. ++++..+|+.+..  +     .++|
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~--~-----~~~f   96 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT--F-----DGEY   96 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC--c-----CCCc
Confidence            446689999999999999999975   469999999999999999999888875 4888888876431  1     3679


Q ss_pred             EEEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |+|++...     ......+++.+.++|+|||++++
T Consensus        97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            99997644     23467889999999999998544

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.53  E-value=3.7e-13  Score=125.93  Aligned_cols=122  Identities=23%  Similarity=0.307  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH
Q 023645          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (279)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (279)
                      .....++..++...++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..|+.  ++++++|+.+..
T Consensus       230 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~  306 (427)
T PRK10901        230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPA  306 (427)
T ss_pred             CHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccch
Confidence            34444555566667788999999999999999999876 479999999999999999999998874  689999987542


Q ss_pred             HHHHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          185 KALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       185 ~~~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ...    ..++||.|++|++...                         ....++.+.++|||||.+++..+.+.
T Consensus       307 ~~~----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~  376 (427)
T PRK10901        307 QWW----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL  376 (427)
T ss_pred             hhc----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            211    1367999999875211                         23578888999999999998776443

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.52  E-value=8.1e-14  Score=125.14  Aligned_cols=104  Identities=13%  Similarity=0.144  Sum_probs=86.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||||||+|..+..+++.   +++|+|||+++++++.|+++....+...+++++++++.+.. ..     +++||+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~-----~~~FD~  201 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DE-----GRKFDA  201 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hc-----cCCCCE
Confidence            4569999999999999988863   57999999999999999988776555567999999986542 21     578999


Q ss_pred             EEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       199 I~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      |++...   ..+...+++.+.++|||||.+++..+.
T Consensus       202 Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        202 VLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             EEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            998653   445778999999999999999998654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.52  E-value=1.9e-13  Score=114.68  Aligned_cols=105  Identities=16%  Similarity=0.246  Sum_probs=87.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ...+|||||||+|.++..++...| +.+++++|+++++++.|+++....++. +++++++|+.+.++....   ++.+|.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~---~~~~d~   90 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFP---DGSLSK   90 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCC---CCceeE
Confidence            455899999999999999999887 789999999999999999999988886 699999999876543321   358999


Q ss_pred             EEEeCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 023645          199 AFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       199 I~id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+++.+..           ....+++.+.+.|||||.|++.
T Consensus        91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091        91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence            99875311           1257899999999999999873

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.52  E-value=3.4e-13  Score=126.19  Aligned_cols=124  Identities=19%  Similarity=0.227  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645          106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (279)
Q Consensus       106 ~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (279)
                      ....++...+...++.+|||+|||+|+.+..+++.++ .++|+++|+++++++.+++++++.|+..++++..+|......
T Consensus       225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~  303 (426)
T TIGR00563       225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ  303 (426)
T ss_pred             HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence            4455566666667788999999999999999999887 789999999999999999999999987445557777643211


Q ss_pred             HHHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          186 ALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       186 ~~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      ..    ..++||.|++|++...                         ....++.+.++|||||.+++..+.+..
T Consensus       304 ~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~  373 (426)
T TIGR00563       304 WA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP  373 (426)
T ss_pred             cc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence            00    1468999999864111                         246788889999999999998776644

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.52  E-value=1.7e-13  Score=119.28  Aligned_cols=106  Identities=12%  Similarity=0.215  Sum_probs=86.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .++.+|||||||+|..+..+++.+ .++++++++|+|+.+++.|+++++..+...+++++++|+.+..        ...+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~  126 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------IENA  126 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC--------CCCC
Confidence            356799999999999999988854 2378999999999999999999998888778999999986542        2458


Q ss_pred             EEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       197 DlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      |+|++...     ......+++++.+.|+|||.+++.+..
T Consensus       127 D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        127 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             CEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            99887533     223467899999999999999997754

>PRK00811 spermidine synthase; Provisional

Probab=99.51  E-value=7e-13  Score=117.49  Aligned_cols=105  Identities=20%  Similarity=0.290  Sum_probs=85.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--C--CCcEEEEEcChhhHHHHHHhCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V--SHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~--~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ..+++||+||||.|..+..+++..+ ..+|+++|+++++++.|++++...+  .  ..+++++.+|+.++++..     .
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----~  148 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-----E  148 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----C
Confidence            4578999999999999999987532 5699999999999999999987532  2  467999999999877652     5


Q ss_pred             CcEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 023645          194 SSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       194 ~~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++||+|++|....       ...++++.+.+.|+|||++++.
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             CcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            7899999986311       1357889999999999999974

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.51  E-value=1.9e-13  Score=124.98  Aligned_cols=102  Identities=11%  Similarity=0.138  Sum_probs=84.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC--CcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ...+|||+|||+|.+++.+++..| ..+|+++|.|+.+++.|+++++.++..  .+++++.+|..+.++       .++|
T Consensus       228 ~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~-------~~~f  299 (378)
T PRK15001        228 LEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE-------PFRF  299 (378)
T ss_pred             cCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC-------CCCE
Confidence            346999999999999999999887 789999999999999999999887653  368999988865332       4589


Q ss_pred             EEEEEeCCcc--------chHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+|+++++.+        ....++..+.+.|+|||.+++-
T Consensus       300 DlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        300 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             EEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            9999987632        2346788889999999998885

>TIGR00740 methyltransferase, putative

Probab=99.51  E-value=3.6e-13  Score=116.51  Aligned_cols=106  Identities=8%  Similarity=0.085  Sum_probs=87.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ++.+|||||||+|..+..+++.++ ++++++++|+++++++.|+++++..+...+++++++|+.+..        ...+|
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~d  124 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--------IKNAS  124 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--------CCCCC
Confidence            567999999999999999998753 378999999999999999999987776667999999997542        24588


Q ss_pred             EEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       198 lI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      +|++...     ..+...+++.+.+.|+|||.+++.+..+
T Consensus       125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence            8877543     2235678999999999999999988654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.51  E-value=2.3e-14  Score=108.39  Aligned_cols=102  Identities=30%  Similarity=0.489  Sum_probs=52.3

Q ss_pred             EEEcCccCHHHHHHHHHCCCCC--EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645          124 IEVGVYTGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (279)
Q Consensus       124 LEiG~G~G~~t~~la~~~~~~~--~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i  201 (279)
                      ||||++.|.++.++++.+++.+  +++++|..+. .+.+++.+++.++.++++++.++..+.++.+.    .++||+|++
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~----~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP----DGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH----H--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC----CCCEEEEEE
Confidence            7999999999999999887554  7999999986 44556666667788889999999999888773    379999999


Q ss_pred             eCCc--cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          202 DAEK--RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       202 d~~~--~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |+.+  +.....++.+.+.|+|||+|++||+
T Consensus        76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~dD~  106 (106)
T PF13578_consen   76 DGDHSYEAVLRDLENALPRLAPGGVIVFDDY  106 (106)
T ss_dssp             ES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence            9874  5677889999999999999999985

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.50  E-value=1.2e-12  Score=114.01  Aligned_cols=109  Identities=22%  Similarity=0.321  Sum_probs=84.2

Q ss_pred             HHHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645          107 QAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (279)
Q Consensus       107 ~~~~l~~l~~-~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (279)
                      ....+..+.. ..++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|+++++.+++.+++.+..+       
T Consensus       106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-------  176 (250)
T PRK00517        106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-------  176 (250)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-------
Confidence            3334444433 246789999999999999887764 3 24799999999999999999998887554544322       


Q ss_pred             HHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       186 ~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                             +.+||+|+++........+++.+.+.|+|||.+++.++.
T Consensus       177 -------~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        177 -------DLKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             -------CCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence                   227999999877666778889999999999999997664

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.50  E-value=2.1e-13  Score=114.53  Aligned_cols=100  Identities=18%  Similarity=0.247  Sum_probs=79.6

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++.+|||+|||+|..+.++++.   +.+|+++|+++.+++.+++..+..++.  +++..+|.... + +     .++
T Consensus        27 ~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~-----~~~   94 (195)
T TIGR00477        27 KTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-L-----NED   94 (195)
T ss_pred             ccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-c-----cCC
Confidence            3445779999999999999999974   579999999999999999988877774  77777776432 1 1     367


Q ss_pred             EEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645          196 YDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       196 fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ||+|++...     ......+++.+.++|+|||++++
T Consensus        95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477        95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            999987643     23456889999999999998555

Part of a tellurite-reducing operon tehA and tehB

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.50  E-value=3.8e-13  Score=119.39  Aligned_cols=120  Identities=18%  Similarity=0.313  Sum_probs=93.5

Q ss_pred             CCHHHHHHHHHHHhh---cCC-CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645          103 VSPDQAQLLAMLVQI---LGA-QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~---~~~-~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (279)
                      ..+++..++......   ..+ .+|||+|||+|..++.++...+ +.+|+++|+++++++.|+++.+..++.++++++++
T Consensus        94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~  172 (284)
T TIGR00536        94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS  172 (284)
T ss_pred             CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            344555555554432   223 6899999999999999999876 67999999999999999999999998777999999


Q ss_pred             ChhhHHHHHHhCCCCCcEEEEEEeCCc----------------------------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          179 LAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       179 d~~~~l~~~~~~~~~~~fDlI~id~~~----------------------------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |..+.++       ..+||+|+++++.                            ..+..+++.+.++|+|||++++.--
T Consensus       173 d~~~~~~-------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g  245 (284)
T TIGR00536       173 NLFEPLA-------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG  245 (284)
T ss_pred             chhccCc-------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence            9875432       3489999987531                            1245677788899999999998643

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.50  E-value=1.3e-13  Score=103.25  Aligned_cols=93  Identities=23%  Similarity=0.336  Sum_probs=74.5

Q ss_pred             EEEEcCccCHHHHHHHHHCCC--CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          123 CIEVGVYTGYSSLAIALVLPE--SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       123 VLEiG~G~G~~t~~la~~~~~--~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      |||+|||+|..+..+++.++.  ..+++++|+++++++.+++.....+.  +++++++|+.+. +..     +++||+|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~-----~~~~D~v~   72 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS-----DGKFDLVV   72 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH-----SSSEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc-----CCCeeEEE
Confidence            799999999999999998732  37999999999999999999988666  589999999774 333     67999999


Q ss_pred             EeCC------ccchHHHHHHHHccCCCCc
Q 023645          201 VDAE------KRMYQEYFELLLQLIRVGG  223 (279)
Q Consensus       201 id~~------~~~~~~~l~~~~~~Lk~gG  223 (279)
                      +...      .+....+++.+.++|+|||
T Consensus        73 ~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   73 CSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             E-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             EcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            9432      3456788999999999998

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.49  E-value=1.7e-13  Score=119.65  Aligned_cols=96  Identities=16%  Similarity=0.185  Sum_probs=80.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++..| +++|+|+|+++.+++.|++.        +++++++|+.+..+       .++|
T Consensus        27 ~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~-------~~~f   90 (255)
T PRK14103         27 AERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP-------KPDT   90 (255)
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC-------CCCc
Confidence            34678999999999999999999876 68999999999999998752        37889999865421       4789


Q ss_pred             EEEEEeCC---ccchHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+|++...   ..+....++.+.+.|||||.+++.
T Consensus        91 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         91 DVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             eEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            99998764   345678899999999999999985

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.49  E-value=9.7e-13  Score=116.95  Aligned_cols=104  Identities=21%  Similarity=0.338  Sum_probs=86.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++++|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++..+++.+++.+..++....   .     .++||
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~-----~~~fD  227 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---I-----EGKAD  227 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---c-----CCCce
Confidence            46789999999999999888764 3 3699999999999999999999988887788877763221   1     46899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +|+++........++..+.+.|+|||.+++..+.
T Consensus       228 lVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       228 VIVANILAEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             EEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            9999887666778899999999999999997764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.49  E-value=1.1e-12  Score=108.62  Aligned_cols=109  Identities=12%  Similarity=0.232  Sum_probs=86.5

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~  188 (279)
                      .++.......++.+|||+|||+|..+..++...   .+|+++|+++++++.++++++..+.  +++++.+|..+..    
T Consensus         9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~----   79 (179)
T TIGR00537         9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV----   79 (179)
T ss_pred             HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence            445555556677899999999999999999864   3899999999999999999987775  4889999986532    


Q ss_pred             hCCCCCcEEEEEEeCCcc------------------------chHHHHHHHHccCCCCcEEEEeCC
Q 023645          189 LNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~~~------------------------~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                          .++||+|+++.+..                        .+..+++.+.++|+|||.+++-..
T Consensus        80 ----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~  141 (179)
T TIGR00537        80 ----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS  141 (179)
T ss_pred             ----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence                35899999885421                        135678888999999999888543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.49  E-value=1.1e-12  Score=121.10  Aligned_cols=111  Identities=19%  Similarity=0.291  Sum_probs=89.8

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++++|||+|||+|.+++.++..  ...+|+++|+++.+++.|+++++.+++. ++++++++|+.+.+..+...  .+
T Consensus       217 ~~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~--~~  292 (396)
T PRK15128        217 RYVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR--GE  292 (396)
T ss_pred             HhcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc--CC
Confidence            3456789999999999998876643  2459999999999999999999999986 47999999999887665322  35


Q ss_pred             cEEEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +||+||+|++.            ..+..++..+.++|+|||+|+.-.+
T Consensus       293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            89999999772            2466667778899999999997543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.49  E-value=1.5e-12  Score=109.30  Aligned_cols=114  Identities=16%  Similarity=0.185  Sum_probs=86.4

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      ..++..+.....+.+|||+|||+|.+++.++...  ..+|+++|.++++++.++++++.++.. +++++++|+.+.++..
T Consensus        42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~  118 (199)
T PRK10909         42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQP  118 (199)
T ss_pred             HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhc
Confidence            3344444444556799999999999998755443  369999999999999999999999875 5999999998766432


Q ss_pred             HhCCCCCcEEEEEEeCC-ccc-hHHHHHHHH--ccCCCCcEEEEeC
Q 023645          188 ILNGEASSYDFAFVDAE-KRM-YQEYFELLL--QLIRVGGIIVIDN  229 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~-~~~-~~~~l~~~~--~~Lk~gG~lv~dd  229 (279)
                           ..+||+||+|++ ... ....++.+.  .+|+|+|++++..
T Consensus       119 -----~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~  159 (199)
T PRK10909        119 -----GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES  159 (199)
T ss_pred             -----CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence                 357999999998 333 444455554  3478999999863

>PRK01581 speE spermidine synthase; Validated

Probab=99.48  E-value=1.2e-12  Score=117.90  Aligned_cols=106  Identities=15%  Similarity=0.226  Sum_probs=84.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHH-----HHhCC-CCcEEEEEcChhhHHHHHHhC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-----ERAGV-SHKVKIKHGLAADSLKALILN  190 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-----~~~g~-~~~v~~~~gd~~~~l~~~~~~  190 (279)
                      ...+++||+||||.|..+..+++. ++..+|+++|+++++++.|++..     ....+ .++++++.+|+.++++..   
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---  223 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---  223 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc---
Confidence            457889999999999988888875 33579999999999999999732     11222 468999999999888654   


Q ss_pred             CCCCcEEEEEEeCCcc--------chHHHHHHHHccCCCCcEEEEe
Q 023645          191 GEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                        .++||+||+|....        ...++++.+.+.|+|||++++.
T Consensus       224 --~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        224 --SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             --CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence              57899999996421        1256899999999999999886

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.48  E-value=2.5e-13  Score=118.77  Aligned_cols=99  Identities=16%  Similarity=0.249  Sum_probs=82.4

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++.+|||||||+|..+..+++..+ +++|+++|+++.+++.|++++      .+++++.+|+.+..+       ..+
T Consensus        28 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~-------~~~   93 (258)
T PRK01683         28 PLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP-------PQA   93 (258)
T ss_pred             CCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC-------CCC
Confidence            345678999999999999999998876 689999999999999998764      247899999865422       468


Q ss_pred             EEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEe
Q 023645          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       196 fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ||+|++...   ..+...+++.+.+.|+|||.+++.
T Consensus        94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            999998765   345678999999999999999985

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=9.3e-13  Score=115.76  Aligned_cols=119  Identities=19%  Similarity=0.277  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          105 PDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       105 ~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      |.+...+..+-.. .++++|||+|||+|..++..++..  ..+++|+|++|.+++.|++|.+.+++...++....+..+.
T Consensus       147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~  224 (300)
T COG2264         147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV  224 (300)
T ss_pred             hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence            3444444444432 478899999999999999988753  3689999999999999999999998875333333333322


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      ..       .++||+|+.+--.+-...+...+.+.|+|||.+++..++-
T Consensus       225 ~~-------~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~  266 (300)
T COG2264         225 PE-------NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILE  266 (300)
T ss_pred             cc-------cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehH
Confidence            21       4699999998766666788889999999999999987653

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.48  E-value=6.4e-14  Score=102.74  Aligned_cols=92  Identities=22%  Similarity=0.313  Sum_probs=74.3

Q ss_pred             EEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeC
Q 023645          124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA  203 (279)
Q Consensus       124 LEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~  203 (279)
                      ||+|||+|..+..+++. + ..+|+++|+++++++.+++....    ..+.++++|+.+. +..     +++||+|++..
T Consensus         1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~~~-----~~sfD~v~~~~   68 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDL-PFP-----DNSFDVVFSNS   68 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSS-SS------TT-EEEEEEES
T ss_pred             CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhC-ccc-----ccccccccccc
Confidence            89999999999999987 3 68999999999999999997763    3466999998765 221     68999999875


Q ss_pred             C---ccchHHHHHHHHccCCCCcEEEE
Q 023645          204 E---KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       204 ~---~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .   .++...+++++.+.|||||.+++
T Consensus        69 ~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   69 VLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            4   35678899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.47  E-value=1.3e-12  Score=119.45  Aligned_cols=118  Identities=23%  Similarity=0.319  Sum_probs=99.5

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhHHHHHHhC
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILN  190 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~~~~~  190 (279)
                      .+.....+++||++.|+||.+++..+..   ++ +||+||.|...++.|++|++.+|+. .++.++++|+++++......
T Consensus       211 ~l~~~~~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~  287 (393)
T COG1092         211 ALGELAAGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR  287 (393)
T ss_pred             HHhhhccCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc
Confidence            3444556899999999999999998875   44 9999999999999999999999984 56899999999999887543


Q ss_pred             CCCCcEEEEEEeCC------------ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          191 GEASSYDFAFVDAE------------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       191 ~~~~~fDlI~id~~------------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                        ..+||+|++|++            ..+|...+..+.++|+|||++++-++...-.
T Consensus       288 --g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~  342 (393)
T COG1092         288 --GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS  342 (393)
T ss_pred             --CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence              359999999986            3457778888899999999999987765544

>PRK04266 fibrillarin; Provisional

Probab=99.47  E-value=2.2e-12  Score=110.51  Aligned_cols=109  Identities=12%  Similarity=0.151  Sum_probs=84.3

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH--HHHHhCCC
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~~~~~~~  192 (279)
                      +...++.+|||+|||+|..+..+++..+ .++|+++|+++++++.+.+..+..   .++.++.+|+.+..  ..+     
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l-----  138 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV-----  138 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-----
Confidence            4556778999999999999999999886 689999999999998877766542   35899999986421  112     


Q ss_pred             CCcEEEEEEeCCcc-chHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          193 ASSYDFAFVDAEKR-MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       193 ~~~fDlI~id~~~~-~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      .++||+|+++.... .....++.+.+.|||||.+++. +.|+
T Consensus       139 ~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~-v~~~  179 (226)
T PRK04266        139 VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA-IKAR  179 (226)
T ss_pred             cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE-Eecc
Confidence            35699999876533 2234588999999999999996 5453

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.46  E-value=6.9e-13  Score=119.55  Aligned_cols=111  Identities=14%  Similarity=0.156  Sum_probs=85.3

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ....+++|||||||+|+.+..++...+  ..|+|+|+++.++..++......+...++.++.+++.+...       .++
T Consensus       119 ~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~  189 (322)
T PRK15068        119 SPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKA  189 (322)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCC
Confidence            335678999999999999999998743  47999999999887655443333334569999998865421       478


Q ss_pred             EEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       196 fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      ||+|++.+.   ..+....++.+.+.|+|||.++++.....+.
T Consensus       190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~  232 (322)
T PRK15068        190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGD  232 (322)
T ss_pred             cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCC
Confidence            999998654   3457789999999999999999987665543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.46  E-value=1.1e-13  Score=114.40  Aligned_cols=102  Identities=16%  Similarity=0.211  Sum_probs=87.0

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      .+....+.+|.|+|||+|.+|..+++++| ++.|+|+|.|++|++.|++...      +++|..+|..++-+       +
T Consensus        25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w~p-------~   90 (257)
T COG4106          25 RVPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTWKP-------E   90 (257)
T ss_pred             hCCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCC------CCceecccHhhcCC-------C
Confidence            34456778999999999999999999999 8999999999999999977543      48999999987644       5


Q ss_pred             CcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .++|++|.++.   ..+....|..+...|.|||+|.++-
T Consensus        91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm  129 (257)
T COG4106          91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQM  129 (257)
T ss_pred             CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence            78999999875   5566788999999999999999863

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.45  E-value=1.5e-12  Score=115.26  Aligned_cols=146  Identities=18%  Similarity=0.295  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          105 PDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       105 ~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      +.+...+..+... .++++|||+|||+|..++..++. + ..+|+++|++|.+++.|++|++.+++.+++.+.  ...+.
T Consensus       146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~  221 (295)
T PF06325_consen  146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL  221 (295)
T ss_dssp             HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc
Confidence            4455555555554 45689999999999999988875 3 358999999999999999999999999877663  11111


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeE
Q 023645          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS  263 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  263 (279)
                      .        .++||+|+.+-...-.......+.++|+|||.+++..++-..              ..++.+.+. . ++.
T Consensus       222 ~--------~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~--------------~~~v~~a~~-~-g~~  277 (295)
T PF06325_consen  222 V--------EGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQ--------------EDEVIEAYK-Q-GFE  277 (295)
T ss_dssp             C--------CS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG--------------HHHHHHHHH-T-TEE
T ss_pred             c--------cccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHH--------------HHHHHHHHH-C-CCE
Confidence            1        489999999988777778888889999999999998776432              245555553 4 777


Q ss_pred             EEE-eecCCceEEEEE
Q 023645          264 ISM-VPIGDGMTICQK  278 (279)
Q Consensus       264 ~~~-lp~~~G~~i~~~  278 (279)
                      ... ..-++...+.-|
T Consensus       278 ~~~~~~~~~W~~l~~~  293 (295)
T PF06325_consen  278 LVEEREEGEWVALVFK  293 (295)
T ss_dssp             EEEEEEETTEEEEEEE
T ss_pred             EEEEEEECCEEEEEEE
Confidence            654 345666666554

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.45  E-value=7.2e-13  Score=116.27  Aligned_cols=108  Identities=11%  Similarity=0.185  Sum_probs=86.2

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      +...++.+|||||||+|..+..++...  +++|+++|+++.+++.|+++...   .+++.++++|+.+..  +    .++
T Consensus        48 l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~--~----~~~  116 (263)
T PTZ00098         48 IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKD--F----PEN  116 (263)
T ss_pred             CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCC--C----CCC
Confidence            355677899999999999999998764  47999999999999999987653   356999999986421  1    157


Q ss_pred             cEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       195 ~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      +||+|++...     ..+...+++.+.++|||||.+++.+....
T Consensus       117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~  160 (263)
T PTZ00098        117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD  160 (263)
T ss_pred             CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence            8999998421     23667899999999999999999887543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.45  E-value=1.3e-12  Score=117.40  Aligned_cols=115  Identities=24%  Similarity=0.359  Sum_probs=90.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      .|.....+...+...++.+|||||||+|+.+..+++..+..++|+++|.++++++.|+++++..|.. ++.++++|+.+.
T Consensus        65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~  143 (322)
T PRK13943         65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYG  143 (322)
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhc
Confidence            4444444444445567789999999999999999998764578999999999999999999988885 599999998765


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++.      .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       144 ~~~------~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        144 VPE------FAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP  179 (322)
T ss_pred             ccc------cCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence            432      3679999998764443   34567889999998874

>TIGR00417 speE spermidine synthase

Probab=99.44  E-value=5e-12  Score=111.38  Aligned_cols=105  Identities=17%  Similarity=0.248  Sum_probs=85.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--C-CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~-~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..+++||+||||+|..+..+++..+ ..+++++|+++++++.+++++...+  . ..+++++.+|+.+.+...     .+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-----~~  144 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-----EN  144 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-----CC
Confidence            4567999999999999988887643 4689999999999999999886542  1 356899999998877654     57


Q ss_pred             cEEEEEEeCCcc-----c--hHHHHHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAEKR-----M--YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~~~-----~--~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +||+|++|....     .  ..++++.+.+.|+|||++++.
T Consensus       145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       145 TFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            999999987511     1  457889999999999999985

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.44  E-value=1.3e-12  Score=117.18  Aligned_cols=114  Identities=14%  Similarity=0.124  Sum_probs=92.7

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (279)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~  190 (279)
                      +.......+..+|||||||+|..+..+++..| +.+++++|. |.+++.++++++..|+.++++++.+|+.+..      
T Consensus       141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~------  212 (306)
T TIGR02716       141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES------  212 (306)
T ss_pred             HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC------
Confidence            33344455678999999999999999999987 689999998 7899999999999999889999999987421      


Q ss_pred             CCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          191 GEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       191 ~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                        ...+|+|++...     .+.....++++.+.|+|||.+++.|+.++.
T Consensus       213 --~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~  259 (306)
T TIGR02716       213 --YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD  259 (306)
T ss_pred             --CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence              134699876542     223456899999999999999999987754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK08317 hypothetical protein; Provisional

Probab=99.44  E-value=3.3e-12  Score=109.57  Aligned_cols=115  Identities=21%  Similarity=0.289  Sum_probs=90.8

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ..+...++.+|||+|||+|.++..++..+++.++++++|+++.+++.++++..  ....+++++.+|+.+..  +    .
T Consensus        13 ~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~--~----~   84 (241)
T PRK08317         13 ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP--F----P   84 (241)
T ss_pred             HHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC--C----C
Confidence            34455667899999999999999999987446899999999999999998733  23346899998875431  1    1


Q ss_pred             CCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          193 ASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       193 ~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      .++||+|++...   ..+...+++.+.++|+|||.+++.+..|...
T Consensus        85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  130 (241)
T PRK08317         85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTL  130 (241)
T ss_pred             CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCce
Confidence            478999998754   3457789999999999999999987766543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.44  E-value=1.7e-12  Score=128.22  Aligned_cols=111  Identities=21%  Similarity=0.273  Sum_probs=92.6

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhHHHHHHhCCC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      +....++++|||+|||+|.++++++..-  ..+|+++|+|+.+++.|++|++.+++. ++++++++|+.+.++..     
T Consensus       533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-----  605 (702)
T PRK11783        533 IGQMAKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-----  605 (702)
T ss_pred             HHHhcCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence            3444568899999999999999999752  247999999999999999999999986 67999999999877654     


Q ss_pred             CCcEEEEEEeCCc--------------cchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          193 ASSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       193 ~~~fDlI~id~~~--------------~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ..+||+|++|++.              .++...+..+.++|+|||++++....
T Consensus       606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            4689999999762              13566788888999999999987553

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.44  E-value=2.4e-12  Score=111.76  Aligned_cols=116  Identities=22%  Similarity=0.387  Sum_probs=90.7

Q ss_pred             CHHHHHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          104 SPDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~--~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .+....++..+....  .+.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...++. +++++++|+.
T Consensus        70 ~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~  147 (251)
T TIGR03534        70 RPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWF  147 (251)
T ss_pred             CCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence            344445555444432  345999999999999999999876 679999999999999999999988886 5999999987


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccc-----------------------------hHHHHHHHHccCCCCcEEEEe
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRM-----------------------------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~-----------------------------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +..+       .++||+|+++.+...                             +..+++.+.++|+|||.+++.
T Consensus       148 ~~~~-------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~  216 (251)
T TIGR03534       148 EPLP-------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE  216 (251)
T ss_pred             ccCc-------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            6332       478999998754110                             235678888999999999985

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14968 putative methyltransferase; Provisional

Probab=99.44  E-value=2.6e-12  Score=106.61  Aligned_cols=110  Identities=16%  Similarity=0.237  Sum_probs=86.4

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc-EEEEEcChhhHHHHH
Q 023645          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLKAL  187 (279)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~~~  187 (279)
                      .++.......++++|||+|||+|..+..++..   +.+++++|.++++++.+++++...++.++ +.++++|..+.+.  
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--   87 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--   87 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence            33344444467789999999999999999886   47999999999999999999988887654 8899998865432  


Q ss_pred             HhCCCCCcEEEEEEeCCcc------------------------chHHHHHHHHccCCCCcEEEEe
Q 023645          188 ILNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~~~------------------------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                           ..+||+|+.+.+..                        ....+++.+.++|+|||.+++-
T Consensus        88 -----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~  147 (188)
T PRK14968         88 -----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL  147 (188)
T ss_pred             -----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                 34899999875421                        1355789999999999988764

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.44  E-value=1.5e-12  Score=124.01  Aligned_cols=101  Identities=20%  Similarity=0.333  Sum_probs=83.9

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      +.+|||+|||+|.+++.++...+ +.+|+++|+|+.+++.|+++++..++.++++++++|+.+.++       .++||+|
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-------~~~fDlI  210 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-------KQKFDFI  210 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-------CCCccEE
Confidence            46899999999999999998876 689999999999999999999998888889999999865432       4689999


Q ss_pred             EEeCCc-----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 023645          200 FVDAEK-----------------------------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       200 ~id~~~-----------------------------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +++++.                             ..+..+++.+.++|+|||.+++.
T Consensus       211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            987541                             11334566777899999999985

>PLN02366 spermidine synthase

Probab=99.42  E-value=8.7e-12  Score=111.38  Aligned_cols=106  Identities=23%  Similarity=0.365  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--C-CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~-~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      .++++||+||||.|..+..+++. +...+|+.+|+++++++.+++.+...+  + +++++++.+|+.+.+....    ++
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~----~~  164 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP----EG  164 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc----CC
Confidence            46789999999999999999876 435699999999999999999987532  3 4589999999988776431    36


Q ss_pred             cEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +||+|++|....       ...++++.+.+.|+|||+++..
T Consensus       165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        165 TYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            899999986532       1457899999999999999875

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.41  E-value=1.9e-12  Score=115.03  Aligned_cols=99  Identities=17%  Similarity=0.256  Sum_probs=81.3

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||+|||+|..+.++++.   +.+|+++|+|+.+++.++++.+..++  ++++..+|..+..  +     +++|
T Consensus       118 ~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~-----~~~f  185 (287)
T PRK12335        118 TVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I-----QEEY  185 (287)
T ss_pred             ccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c-----cCCc
Confidence            345679999999999999999874   57999999999999999999988887  4888888875421  1     4789


Q ss_pred             EEEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |+|++...     ......+++.+.+.|+|||++++
T Consensus       186 D~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        186 DFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             cEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            99987643     24567889999999999999665

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.41  E-value=1.1e-11  Score=103.39  Aligned_cols=116  Identities=14%  Similarity=0.103  Sum_probs=89.7

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHh
Q 023645          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (279)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~  189 (279)
                      ++..+.....+.+|||++||+|..++.+++...  .+|+++|.++.+++.++++++..+..++++++.+|+.+.+..+..
T Consensus        40 ~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~  117 (189)
T TIGR00095        40 FFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK  117 (189)
T ss_pred             HHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc
Confidence            333333345678999999999999999998743  489999999999999999999999877899999999877654321


Q ss_pred             CCCCCcEEEEEEeCCcc--chHHHHHHHH--ccCCCCcEEEEeC
Q 023645          190 NGEASSYDFAFVDAEKR--MYQEYFELLL--QLIRVGGIIVIDN  229 (279)
Q Consensus       190 ~~~~~~fDlI~id~~~~--~~~~~l~~~~--~~Lk~gG~lv~dd  229 (279)
                      .  ...||+||.|++..  .+...++.+.  .+|+++|++++..
T Consensus       118 ~--~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       118 K--PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             c--CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            1  23589999998743  3455555553  5799999999864

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR00452 methyltransferase, putative

Probab=99.41  E-value=2.4e-12  Score=115.21  Aligned_cols=110  Identities=14%  Similarity=0.130  Sum_probs=83.1

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++++|||||||+|+.+..++...+  ..|+|+|+|+.++..++..-+..+...++.+..+++.+...       ..+|
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~F  189 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAF  189 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCc
Confidence            35678999999999999988887533  47999999999987654433333334568888888754321       3589


Q ss_pred             EEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       197 DlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      |+||+.+.   ..+....+.++.+.|+|||.|++......|.
T Consensus       190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~  231 (314)
T TIGR00452       190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGD  231 (314)
T ss_pred             CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCc
Confidence            99998764   4456789999999999999999987765553

Known examples to date are restricted to the proteobacteria.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.41  E-value=4.1e-12  Score=115.88  Aligned_cols=103  Identities=21%  Similarity=0.234  Sum_probs=87.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ....+||||||+|..+..+|...| +..++|+|+++.+++.|.+.+...++.+ +.++++|+...+..+    .++++|.
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~----~~~s~D~  195 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELL----PSNSVEK  195 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhC----CCCceeE
Confidence            456899999999999999999987 7899999999999999999999988875 999999997655433    2579999


Q ss_pred             EEEeCCcc---------chHHHHHHHHccCCCCcEEEE
Q 023645          199 AFVDAEKR---------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       199 I~id~~~~---------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |+++.+..         ....+++.+.++|+|||.+.+
T Consensus       196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l  233 (390)
T PRK14121        196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL  233 (390)
T ss_pred             EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence            99875421         126789999999999999887

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.40  E-value=3.3e-12  Score=115.92  Aligned_cols=98  Identities=16%  Similarity=0.204  Sum_probs=81.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ...+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++++.+++.  .+++.+|..+.   .     .++||+
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~---~-----~~~fDl  264 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD---I-----KGRFDM  264 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc---c-----CCCccE
Confidence            345899999999999999998876 679999999999999999999988875  46777777542   1     478999


Q ss_pred             EEEeCCcc--------chHHHHHHHHccCCCCcEEEE
Q 023645          199 AFVDAEKR--------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       199 I~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |+++.+.+        ....++..+.+.|+|||.+++
T Consensus       265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i  301 (342)
T PRK09489        265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI  301 (342)
T ss_pred             EEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence            99987632        246788999999999999876

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.40  E-value=6.3e-12  Score=104.26  Aligned_cols=126  Identities=23%  Similarity=0.371  Sum_probs=95.7

Q ss_pred             CCCCCHHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645          100 QMQVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (279)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (279)
                      ++..+.....++..+... ..+.+|||+.||+|..++..+++-  ..+|+.||.++..+...++|++..+..++++++.+
T Consensus        22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~   99 (183)
T PF03602_consen   22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG   99 (183)
T ss_dssp             -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred             CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence            445555566666666666 788999999999999999877763  25999999999999999999999999888999999


Q ss_pred             ChhhHHHHHHhCCCCCcEEEEEEeCCccc---hHHHHHHHH--ccCCCCcEEEEeC
Q 023645          179 LAADSLKALILNGEASSYDFAFVDAEKRM---YQEYFELLL--QLIRVGGIIVIDN  229 (279)
Q Consensus       179 d~~~~l~~~~~~~~~~~fDlI~id~~~~~---~~~~l~~~~--~~Lk~gG~lv~dd  229 (279)
                      |+...+......  ..+||+||+|++...   +...++.+.  .+|+++|+|++.-
T Consensus       100 d~~~~l~~~~~~--~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen  100 DAFKFLLKLAKK--GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             SHHHHHHHHHHC--TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CHHHHHHhhccc--CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            998887665332  479999999998432   366777776  8999999999964

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.40  E-value=4.5e-12  Score=107.08  Aligned_cols=103  Identities=17%  Similarity=0.255  Sum_probs=79.0

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++.+|||+|||+|..+..+++..+ +.+++|+|+|+++++.|++++.      ++.+.++|+.+..       .+++
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~~~-------~~~s  105 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFDPF-------KDNF  105 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccCCC-------CCCC
Confidence            344667999999999999999998765 6799999999999999988642      3678888876521       1579


Q ss_pred             EEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          196 YDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       196 fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      ||+|++...     .......++++.+.+  ++++++.++.-+.
T Consensus       106 fD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~  147 (204)
T TIGR03587       106 FDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS  147 (204)
T ss_pred             EEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence            999998664     233567788888876  5688887775444

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.40  E-value=5e-12  Score=108.70  Aligned_cols=109  Identities=17%  Similarity=0.235  Sum_probs=89.4

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+...+++++.+|+.+...      +.++|
T Consensus        49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~  122 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSF  122 (239)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCc
Confidence            345679999999999999999998765689999999999999999998876666679999999865421      14689


Q ss_pred             EEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       197 DlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      |+|++...   ..+....++.+.++|+|||.+++-+..
T Consensus       123 D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~  160 (239)
T PRK00216        123 DAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS  160 (239)
T ss_pred             cEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence            99987643   445778899999999999999875543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.38  E-value=3.8e-12  Score=120.80  Aligned_cols=108  Identities=14%  Similarity=0.207  Sum_probs=87.5

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++.+|||||||+|..+..+++..  +++|+|+|+|+++++.|+++..  +...++++.++|+.+..  +    .+++
T Consensus       263 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~----~~~~  332 (475)
T PLN02336        263 DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--Y----PDNS  332 (475)
T ss_pred             CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--C----CCCC
Confidence            34567799999999999999999875  4799999999999999998765  44557999999986531  1    1468


Q ss_pred             EEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       196 fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ||+|++...   ..+...+++.+.+.|+|||.+++.+....
T Consensus       333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  373 (475)
T PLN02336        333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRS  373 (475)
T ss_pred             EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            999998644   34567899999999999999999876543

>PRK06922 hypothetical protein; Provisional

Probab=99.38  E-value=5.6e-12  Score=120.81  Aligned_cols=114  Identities=14%  Similarity=0.201  Sum_probs=88.9

Q ss_pred             HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645          112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       112 ~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      ..+....++.+|||||||+|..+..+++..| +++++|+|+++.+++.|+++....+  .++.++++|+.+....+    
T Consensus       411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f----  483 (677)
T PRK06922        411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF----  483 (677)
T ss_pred             HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc----
Confidence            3445556788999999999999999998876 7899999999999999998876544  35888999987532112    


Q ss_pred             CCCcEEEEEEeCC----------------ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          192 EASSYDFAFVDAE----------------KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       192 ~~~~fDlI~id~~----------------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      ++++||+|++...                ......+++.+.+.|||||.+++.|..+
T Consensus       484 edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~  540 (677)
T PRK06922        484 EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM  540 (677)
T ss_pred             CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence            1578999987532                1245678999999999999999976543

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.38  E-value=7.9e-12  Score=108.90  Aligned_cols=100  Identities=17%  Similarity=0.188  Sum_probs=79.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      +.+|||+|||+|..++.++...+ +.+|+++|+++.+++.|+++++.++    ++++++|+.+.++...    .++||+|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~----~~~fDlV  157 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL----RGRVDIL  157 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc----CCCEeEE
Confidence            45899999999999999998876 5799999999999999999998755    4789999876543221    3579999


Q ss_pred             EEeCCccc-----------------------------hHHHHHHHHccCCCCcEEEEe
Q 023645          200 FVDAEKRM-----------------------------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       200 ~id~~~~~-----------------------------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++|++...                             +..+++.+.++|+|||.+++.
T Consensus       158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            99875210                             235666677999999999985

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14967 putative methyltransferase; Provisional

Probab=99.38  E-value=9.6e-12  Score=106.54  Aligned_cols=99  Identities=18%  Similarity=0.271  Sum_probs=80.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.++++++..+.  +++++.+|+.+.++       +++||
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~-------~~~fD  103 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE-------FRPFD  103 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc-------CCCee
Confidence            45679999999999999998875 3 35999999999999999999988776  48899999865432       47899


Q ss_pred             EEEEeCCcc------------------------chHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~~------------------------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +|+++.+..                        .+..+++.+.++|+|||.+++
T Consensus       104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~  157 (223)
T PRK14967        104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL  157 (223)
T ss_pred             EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            999985411                        134567788999999999986

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.38  E-value=4.9e-12  Score=114.58  Aligned_cols=117  Identities=20%  Similarity=0.280  Sum_probs=95.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .+.+..+..+..++...++.+|||+|||+|..++.++..   +.+++|+|+++.+++.++++++..|+.+ +++.++|+.
T Consensus       165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~  240 (329)
T TIGR01177       165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDAT  240 (329)
T ss_pred             CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchh
Confidence            456677777777777778889999999999998876653   5799999999999999999999999876 899999997


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEe
Q 023645          182 DSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +. +..     +++||+|++|++.            ..+..+++.+.+.|+|||.+++-
T Consensus       241 ~l-~~~-----~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       241 KL-PLS-----SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             cC-Ccc-----cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence            64 211     4789999998652            12577889999999999998873

This family is found exclusively in the Archaea.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.38  E-value=7.2e-12  Score=115.03  Aligned_cols=118  Identities=18%  Similarity=0.260  Sum_probs=90.5

Q ss_pred             CCCHHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          102 QVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ...+++..++..+... .+..+|||+|||+|..++.++...+ +.+++++|+|+++++.|+++++..+.  +++++++|.
T Consensus       233 IPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl  309 (423)
T PRK14966        233 IPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSW  309 (423)
T ss_pred             CCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch
Confidence            3456667777766553 3456999999999999999998766 68999999999999999999988764  699999998


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCcc----------------------------chHHHHHHHHccCCCCcEEEE
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEKR----------------------------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~~----------------------------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .+.....     .++||+|+++++.-                            .+..+++.+.+.|+|||.+++
T Consensus       310 ~e~~l~~-----~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil  379 (423)
T PRK14966        310 FDTDMPS-----EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL  379 (423)
T ss_pred             hcccccc-----CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence            6531111     35799999987520                            133455666689999999887

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.38  E-value=5.7e-12  Score=111.04  Aligned_cols=116  Identities=19%  Similarity=0.374  Sum_probs=88.9

Q ss_pred             CHHHHHHHHHHH---hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          104 SPDQAQLLAMLV---QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       104 ~~~~~~~l~~l~---~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      .+++..++..+.   ...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.|+++++ .+...++.++++|+
T Consensus        90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~  167 (275)
T PRK09328         90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDW  167 (275)
T ss_pred             CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccc
Confidence            344444455444   234567999999999999999999886 6899999999999999999988 44455799999998


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCc-----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEK-----------------------------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~-----------------------------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .+.++       .++||+|+++.+.                             ..+..+++.+.++|+|||.+++.
T Consensus       168 ~~~~~-------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        168 FEPLP-------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             cCcCC-------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            54322       3689999987541                             11345677778999999999983

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=5.3e-12  Score=111.54  Aligned_cols=117  Identities=18%  Similarity=0.362  Sum_probs=90.8

Q ss_pred             CCCHHHHHHHHHHH-hh-cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          102 QVSPDQAQLLAMLV-QI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       102 ~~~~~~~~~l~~l~-~~-~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      ...+++..++..+. .. ..+.+|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|...+|+ .++.++.+|
T Consensus        91 iPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~d  168 (280)
T COG2890          91 IPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSD  168 (280)
T ss_pred             ecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeee
Confidence            34566776777643 11 1222799999999999999999987 68999999999999999999999998 557777777


Q ss_pred             hhhHHHHHHhCCCCCcEEEEEEeCC---cc-------------------------chHHHHHHHHccCCCCcEEEEe
Q 023645          180 AADSLKALILNGEASSYDFAFVDAE---KR-------------------------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       180 ~~~~l~~~~~~~~~~~fDlI~id~~---~~-------------------------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .++.+        .++||+|+++++   .+                         .+..++..+...|+|||++++.
T Consensus       169 lf~~~--------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le  237 (280)
T COG2890         169 LFEPL--------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE  237 (280)
T ss_pred             ccccc--------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence            66543        469999998865   11                         1345667777999999999985

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.37  E-value=6.2e-12  Score=104.41  Aligned_cols=104  Identities=18%  Similarity=0.266  Sum_probs=81.6

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ++..++.++||+|||.|..++++|+.   +..|+++|.|+..++.+++..+..+++  ++..+.|..+...       .+
T Consensus        26 ~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~-------~~   93 (192)
T PF03848_consen   26 VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF-------PE   93 (192)
T ss_dssp             CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS--------TT
T ss_pred             HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc-------cC
Confidence            44556789999999999999999986   679999999999999999988888875  8999998865422       46


Q ss_pred             cEEEEEEeC-----CccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~-----~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .||+|++..     ..+..+..++.+...++|||++++...
T Consensus        94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   94 EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            899998753     255567789999999999999888443

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=99.37  E-value=4.8e-11  Score=99.28  Aligned_cols=156  Identities=23%  Similarity=0.320  Sum_probs=120.2

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCH--HHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGY--SSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~--~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      .|..++||..++.-...+.++|+.|+.|.  +|+.|+-+. .-+++++||-.+++.....++.+...++.+.++|+.|+.
T Consensus        26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~  105 (218)
T PF07279_consen   26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA  105 (218)
T ss_pred             CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence            56789999999999999999999877553  345544332 236899999999998888889998889888789999985


Q ss_pred             h-hHHHHHHhCCCCCcEEEEEEeCCccchH-HHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhh
Q 023645          181 A-DSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLME  258 (279)
Q Consensus       181 ~-~~l~~~~~~~~~~~fDlI~id~~~~~~~-~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  258 (279)
                      . +.++.+      ...|++++|+..+++. .+|+. .++=++|.++|..|.+..+. ..           ..|...+..
T Consensus       106 ~e~~~~~~------~~iDF~vVDc~~~d~~~~vl~~-~~~~~~GaVVV~~Na~~r~~-~~-----------~~w~~~~~~  166 (218)
T PF07279_consen  106 PEEVMPGL------KGIDFVVVDCKREDFAARVLRA-AKLSPRGAVVVCYNAFSRST-NG-----------FSWRSVLRG  166 (218)
T ss_pred             HHHHHhhc------cCCCEEEEeCCchhHHHHHHHH-hccCCCceEEEEeccccCCc-CC-----------ccHHHhcCC
Confidence            4 456654      6899999999988877 66665 34445677888888765432 10           235666778


Q ss_pred             CCCeEEEEeecCCceEEEEE
Q 023645          259 DERVSISMVPIGDGMTICQK  278 (279)
Q Consensus       259 ~~~~~~~~lp~~~G~~i~~~  278 (279)
                      .+.+.++.||||.||.+++-
T Consensus       167 ~r~Vrsv~LPIG~GleVt~i  186 (218)
T PF07279_consen  167 RRVVRSVFLPIGKGLEVTRI  186 (218)
T ss_pred             CCceeEEEeccCCCeEEEEE
Confidence            88899999999999999873

The function of this family is unknown.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.37  E-value=8.7e-12  Score=109.80  Aligned_cols=109  Identities=23%  Similarity=0.332  Sum_probs=84.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...+++||++.|+||.+++..+..-  ..+|++||.|..+++.+++|++.+|++ ++++++.+|+.+.+..+..   .++
T Consensus       121 ~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~---~~~  195 (286)
T PF10672_consen  121 YAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK---GGR  195 (286)
T ss_dssp             HCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH---TT-
T ss_pred             HcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc---CCC
Confidence            3457899999999999999877642  248999999999999999999999986 6799999999998876533   469


Q ss_pred             EEEEEEeCC---------ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          196 YDFAFVDAE---------KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       196 fDlI~id~~---------~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ||+|++|++         ..+|...+..+.++|+|||+|++-..
T Consensus       196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            999999987         34577788888999999999886443

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=6.9e-12  Score=109.77  Aligned_cols=113  Identities=21%  Similarity=0.300  Sum_probs=89.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      .....-++..+..... .+|||+|||.|..++.+++..| ..+++.+|+|..+++.|+++++.++.++. .+...|..+.
T Consensus       144 D~GS~lLl~~l~~~~~-~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~  220 (300)
T COG2813         144 DKGSRLLLETLPPDLG-GKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEP  220 (300)
T ss_pred             ChHHHHHHHhCCccCC-CcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccccc
Confidence            3344444444444434 4999999999999999999988 88999999999999999999999988764 6777777654


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCccc----h----HHHHHHHHccCCCCcEEEE
Q 023645          184 LKALILNGEASSYDFAFVDAEKRM----Y----QEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~~----~----~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .        .++||+|+++++.+.    .    .++++.+.+.|++||.|.+
T Consensus       221 v--------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         221 V--------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             c--------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence            3        359999999987332    2    3778888999999998765

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.37  E-value=1.5e-11  Score=110.71  Aligned_cols=122  Identities=19%  Similarity=0.094  Sum_probs=91.1

Q ss_pred             CCCCCCCHHHHHHHHH----HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcE
Q 023645           98 GSQMQVSPDQAQLLAM----LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  173 (279)
Q Consensus        98 ~~~~~~~~~~~~~l~~----l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v  173 (279)
                      .++.++++...+.+..    ++...++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.|+++++.+++ +++
T Consensus       148 ~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v  223 (315)
T PRK03522        148 QSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNV  223 (315)
T ss_pred             CeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-Cce
Confidence            4455666655444432    222235689999999999999999984   46999999999999999999999998 469


Q ss_pred             EEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       174 ~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +++++|+.+.....     .++||+|++|++.......+..+...++|++++++.
T Consensus       224 ~~~~~D~~~~~~~~-----~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs  273 (315)
T PRK03522        224 QFQALDSTQFATAQ-----GEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSS  273 (315)
T ss_pred             EEEEcCHHHHHHhc-----CCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence            99999998765432     357999999988665444444444557788777763

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.36  E-value=1.8e-13  Score=102.05  Aligned_cols=96  Identities=18%  Similarity=0.218  Sum_probs=62.6

Q ss_pred             EEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeC
Q 023645          124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA  203 (279)
Q Consensus       124 LEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~  203 (279)
                      ||||||+|..+..++..++ ..+++++|+|+.+++.+++.+...+... ......+..+.....    ..++||+|++..
T Consensus         1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~fD~V~~~~   74 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD----PPESFDLVVASN   74 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC----C----SEEEEE-
T ss_pred             CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc----cccccceehhhh
Confidence            7999999999999999985 7899999999999999999888766543 333333333322211    025999999865


Q ss_pred             C---ccchHHHHHHHHccCCCCcEE
Q 023645          204 E---KRMYQEYFELLLQLIRVGGII  225 (279)
Q Consensus       204 ~---~~~~~~~l~~~~~~Lk~gG~l  225 (279)
                      .   .++...+++.+.++|+|||+|
T Consensus        75 vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   75 VLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            4   356778999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.36  E-value=3.3e-12  Score=111.23  Aligned_cols=101  Identities=13%  Similarity=0.160  Sum_probs=79.3

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++.+|||+|||+|..+..++..   +.+++++|+++++++.++++..      ...++++|+.+. +.     .+++
T Consensus        39 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~~-----~~~~  103 (251)
T PRK10258         39 PQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-PL-----ATAT  103 (251)
T ss_pred             CccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-cC-----CCCc
Confidence            3345679999999999999888763   5799999999999999987643      246788888653 21     1568


Q ss_pred             EEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       196 fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ||+|+++..   ..+....+.++.++|+|||.+++....
T Consensus       104 fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258        104 FDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             EEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            999998754   456778899999999999999986543

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.35  E-value=1.8e-11  Score=103.83  Aligned_cols=105  Identities=15%  Similarity=0.149  Sum_probs=88.3

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCC-----CEEEEEeCChhHHHHHHHHHHHhCCCCc--EEEEEcChhhHHHHHHh
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPES-----GCLVACERDARSLEVAKKYYERAGVSHK--VKIKHGLAADSLKALIL  189 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~-----~~v~~iD~s~~~~~~a~~~~~~~g~~~~--v~~~~gd~~~~l~~~~~  189 (279)
                      .....++||++||||..+..+.+..+..     ++|+.+|++|+|+..+++...+.++...  +.++++|+.+. | +  
T Consensus        98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F--  173 (296)
T KOG1540|consen   98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F--  173 (296)
T ss_pred             CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C--
Confidence            3455799999999999999999987632     7999999999999999999988777655  89999999754 3 2  


Q ss_pred             CCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEE
Q 023645          190 NGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       190 ~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                        ++.+||...+...   ..+....+++++++|||||.+.+
T Consensus       174 --dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c  212 (296)
T KOG1540|consen  174 --DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC  212 (296)
T ss_pred             --CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence              2689999887765   55678899999999999999875

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.34  E-value=1.6e-12  Score=110.75  Aligned_cols=101  Identities=16%  Similarity=0.203  Sum_probs=80.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-----cEEEEEcChhhHHHHHHhCCCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-----~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      -+++|||+|||+|..+..|++.   ++.|+|||+++++++.|++........+     ++++.+.++.+.         .
T Consensus        89 ~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---------~  156 (282)
T KOG1270|consen   89 LGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---------T  156 (282)
T ss_pred             CCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---------c
Confidence            3578999999999999999986   5799999999999999999854433333     255666665432         4


Q ss_pred             CcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          194 SSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       194 ~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ++||.|++.-.   ..+..++++.+.++|||||.+++..+.
T Consensus       157 ~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin  197 (282)
T KOG1270|consen  157 GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN  197 (282)
T ss_pred             cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence            67999998654   345678899999999999999998876

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.34  E-value=1.1e-11  Score=106.51  Aligned_cols=102  Identities=21%  Similarity=0.253  Sum_probs=82.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      .+.+|||+|||+|.++..+++..+ ..+++++|++++++..+++...     .+++++.+|+.+...      .+++||+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~------~~~~fD~  101 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL------EDSSFDL  101 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC------CCCceeE
Confidence            457999999999999999999876 6789999999999998887654     258899999865421      1578999


Q ss_pred             EEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       199 I~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      |++...   ..+....++.+.++|+|||.+++.....
T Consensus       102 vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~  138 (240)
T TIGR02072       102 IVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP  138 (240)
T ss_pred             EEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            998754   3356788999999999999999975543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.32  E-value=5.9e-11  Score=102.14  Aligned_cols=116  Identities=16%  Similarity=0.222  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH
Q 023645          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (279)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (279)
                      +....++.......++.+|||||||+|..+..+++.   +.+++++|+++.+++.+++++...+.  .++++.++..+..
T Consensus        34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~  108 (233)
T PRK05134         34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELA  108 (233)
T ss_pred             HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhh
Confidence            333445555555556789999999999999888875   46899999999999999998877665  4788888886654


Q ss_pred             HHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          185 KALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       185 ~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ...     .++||+|++...   ..+....++.+.+.|+|||.+++...
T Consensus       109 ~~~-----~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        109 AEH-----PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             hhc-----CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence            322     478999988643   33566788999999999999998754

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.32  E-value=2.5e-11  Score=103.23  Aligned_cols=106  Identities=22%  Similarity=0.262  Sum_probs=85.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++.   ...+++++.+|+.+...      ..++||
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~------~~~~~D  108 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF------EDNSFD  108 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC------CCCcEE
Confidence            367899999999999999999988744799999999999999998875   34568999999876431      146899


Q ss_pred             EEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       198 lI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      +|++...   ..+....++.+.+.|+|||.+++.+...
T Consensus       109 ~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  146 (223)
T TIGR01934       109 AVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK  146 (223)
T ss_pred             EEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            9987643   4557788999999999999999866543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.31  E-value=1.7e-11  Score=104.22  Aligned_cols=102  Identities=16%  Similarity=0.066  Sum_probs=76.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC--------------CCcEEEEEcChhhHH
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------------SHKVKIKHGLAADSL  184 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--------------~~~v~~~~gd~~~~l  184 (279)
                      ++.+|||+|||.|..+.+||+.   +.+|+|+|+|+.+++.+.+   ++++              ..+++++++|+.+..
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  107 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT  107 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence            5569999999999999999975   6799999999999997633   2222              235899999998653


Q ss_pred             HHHHhCCCCCcEEEEEEe-----CCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          185 KALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       185 ~~~~~~~~~~~fDlI~id-----~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ...     .++||.|+-.     .+.+....+++.+.++|+|||++++....
T Consensus       108 ~~~-----~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       108 AAD-----LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             ccc-----CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            321     2568877642     23455677999999999999986665443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.30  E-value=1.9e-11  Score=110.32  Aligned_cols=100  Identities=18%  Similarity=0.176  Sum_probs=80.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||||||+|..+..+++..+ +.+++++|.++++++.|+++...    .+++++.+|+.+. +.     .+++||+
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p~-----~~~sFDv  181 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-PF-----PTDYADR  181 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-CC-----CCCceeE
Confidence            457999999999999999998775 57999999999999999987642    3478899998653 11     1578999


Q ss_pred             EEEeCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       199 I~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |++...   ..+....++++.+.|+|||.+++-+
T Consensus       182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            998653   3345678999999999999987743

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.30  E-value=2.7e-11  Score=103.66  Aligned_cols=125  Identities=17%  Similarity=0.301  Sum_probs=97.7

Q ss_pred             CCCCHHHHHHHHHHHhh------cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE
Q 023645          101 MQVSPDQAQLLAMLVQI------LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  174 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~------~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~  174 (279)
                      ....+++.+++...++.      ..+..+||+|||+|..++.++..+| .++|+++|.|+.++..|.+|..++++.+++.
T Consensus       124 lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~  202 (328)
T KOG2904|consen  124 LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIE  202 (328)
T ss_pred             eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence            34567888888877664      2455899999999999999999998 8999999999999999999999999999999


Q ss_pred             EEEcCh----hhHHHHHHhCCCCCcEEEEEEeCCc-----------------------------cchHHHHHHHHccCCC
Q 023645          175 IKHGLA----ADSLKALILNGEASSYDFAFVDAEK-----------------------------RMYQEYFELLLQLIRV  221 (279)
Q Consensus       175 ~~~gd~----~~~l~~~~~~~~~~~fDlI~id~~~-----------------------------~~~~~~l~~~~~~Lk~  221 (279)
                      +++-+.    .+..+.+     .+++|+++++++.                             +.+..++..+.++|+|
T Consensus       203 v~~~~me~d~~~~~~l~-----~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~  277 (328)
T KOG2904|consen  203 VIHNIMESDASDEHPLL-----EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP  277 (328)
T ss_pred             EEecccccccccccccc-----cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc
Confidence            885533    3222222     5899999887540                             1123456666799999


Q ss_pred             CcEEEEeCCC
Q 023645          222 GGIIVIDNVL  231 (279)
Q Consensus       222 gG~lv~dd~~  231 (279)
                      ||.+.+.-+.
T Consensus       278 gg~~~le~~~  287 (328)
T KOG2904|consen  278 GGFEQLELVE  287 (328)
T ss_pred             CCeEEEEecc
Confidence            9999997553

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.30  E-value=6.7e-11  Score=108.89  Aligned_cols=122  Identities=17%  Similarity=0.106  Sum_probs=94.0

Q ss_pred             CCCCCCCCHHHHHHHHHHH-h---hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc
Q 023645           97 RGSQMQVSPDQAQLLAMLV-Q---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  172 (279)
Q Consensus        97 ~~~~~~~~~~~~~~l~~l~-~---~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~  172 (279)
                      +.++.++++...+.+...+ .   ..++.+|||+|||+|..++.++..   +.+|+++|+++.+++.|+++.+.++.. +
T Consensus       207 ~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~  282 (374)
T TIGR02085       207 PQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-N  282 (374)
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-c
Confidence            4556777777766654433 2   235679999999999999999864   468999999999999999999998885 6


Q ss_pred             EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccch-HHHHHHHHccCCCCcEEEEe
Q 023645          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY-QEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~-~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++++.+|+.+.+...     ..+||+|++|++.... ...++.+. .++|++++++.
T Consensus       283 ~~~~~~d~~~~~~~~-----~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       283 LSFAALDSAKFATAQ-----MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             EEEEECCHHHHHHhc-----CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence            999999998766432     3569999999986653 34445554 57898888874

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.30  E-value=1.2e-10  Score=95.61  Aligned_cols=127  Identities=18%  Similarity=0.305  Sum_probs=100.1

Q ss_pred             CCCCCCCHHHHHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEE
Q 023645           98 GSQMQVSPDQAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK  176 (279)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~-~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~  176 (279)
                      ..++..+.....+...+.. ...+.++||+.+|+|..++..+++.  ..+++.||.+.......++|++..++..+++++
T Consensus        21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~   98 (187)
T COG0742          21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVL   98 (187)
T ss_pred             CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEE
Confidence            3455666666777777777 4888999999999999999988764  268999999999999999999999988889999


Q ss_pred             EcChhhHHHHHHhCCCCCcEEEEEEeCCcc--chHHHHHHH----HccCCCCcEEEEeC
Q 023645          177 HGLAADSLKALILNGEASSYDFAFVDAEKR--MYQEYFELL----LQLIRVGGIIVIDN  229 (279)
Q Consensus       177 ~gd~~~~l~~~~~~~~~~~fDlI~id~~~~--~~~~~l~~~----~~~Lk~gG~lv~dd  229 (279)
                      ..|+...++....   .++||+||+|++..  ........+    ..+|+|+|.+++..
T Consensus        99 ~~da~~~L~~~~~---~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~  154 (187)
T COG0742          99 RNDALRALKQLGT---REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH  154 (187)
T ss_pred             eecHHHHHHhcCC---CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence            9999877766521   23599999999855  232233333    37899999999964

>TIGR03438 probable methyltransferase

Probab=99.29  E-value=5e-11  Score=106.63  Aligned_cols=110  Identities=14%  Similarity=0.047  Sum_probs=80.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||+|||+|..+..+++.++.+.+|+++|+|++|++.+++++......-++.++++|+.+.++.. .........+
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-~~~~~~~~~~  141 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-PEPAAGRRLG  141 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh-cccccCCeEE
Confidence            457999999999999999999876457999999999999999998876443335788999997643322 1000113344


Q ss_pred             EEEeCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          199 AFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       199 I~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ++++..     ......+++.+.+.|+|||.++++-
T Consensus       142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            554432     3445678999999999999998743

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.29  E-value=3.3e-11  Score=97.05  Aligned_cols=106  Identities=22%  Similarity=0.243  Sum_probs=77.8

Q ss_pred             HHHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645          107 QAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (279)
Q Consensus       107 ~~~~l~~l~~-~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (279)
                      ....+..+.. ..++.+|||||||+|..+..+++.   +.+++++|+++.+++.           ..+....-+..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~   74 (161)
T PF13489_consen    9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPF   74 (161)
T ss_dssp             HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHC
T ss_pred             HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhc
Confidence            3445555554 567789999999999999999765   3599999999999877           112232222222111


Q ss_pred             HHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          186 ALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       186 ~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                       .     +++||+|++...   ..+...+++.+.++|||||++++.....
T Consensus        75 -~-----~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   75 -P-----DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             -H-----SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             -c-----ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence             1     689999999865   3457789999999999999999988764

...

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.29  E-value=3.1e-11  Score=102.38  Aligned_cols=99  Identities=18%  Similarity=0.227  Sum_probs=74.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCc
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~  195 (279)
                      .++.+|||||||+|.++..+++..++.++|+++|+++.           .+.. .++++++|+.+.  ++.+......++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~  117 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIV-GVDFLQGDFRDELVLKALLERVGDSK  117 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCC-CcEEEecCCCChHHHHHHHHHhCCCC
Confidence            45679999999999999999998865689999999981           1222 489999998763  333222222578


Q ss_pred             EEEEEEeCCcc-------c-------hHHHHHHHHccCCCCcEEEEe
Q 023645          196 YDFAFVDAEKR-------M-------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       196 fDlI~id~~~~-------~-------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ||+|+++....       +       ....++.+.++|+|||.+++.
T Consensus       118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            99999875311       1       135788889999999999995

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.29  E-value=1.6e-11  Score=101.12  Aligned_cols=141  Identities=16%  Similarity=0.204  Sum_probs=90.1

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      .++||+|||.|.+|..|+...   .+++++|+++.+++.|++....  .. +|++++++..+..+       .++||+|+
T Consensus        45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~-~V~~~~~dvp~~~P-------~~~FDLIV  111 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LP-HVEWIQADVPEFWP-------EGRFDLIV  111 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT----------SS-EEEEE
T ss_pred             ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CC-CeEEEECcCCCCCC-------CCCeeEEE
Confidence            589999999999999999875   4999999999999999998864  33 59999999987655       68999999


Q ss_pred             EeCC------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCccc-CChhhHH-HHHHHHHhhhCCCeEEEEeecCCc
Q 023645          201 VDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV-NDAKTIS-IRNFNKNLMEDERVSISMVPIGDG  272 (279)
Q Consensus       201 id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~-~~~~~~~-~~~~~~~l~~~~~~~~~~lp~~~G  272 (279)
                      +...      ......++..+...|+|||.+|+-...  ..... .+ +...... +.-|.+.+.+=.++++---..+..
T Consensus       112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r--d~~c~-~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~  188 (201)
T PF05401_consen  112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR--DANCR-RWGHAAGAETVLEMLQEHLTEVERVECRGGSPNED  188 (201)
T ss_dssp             EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE---HHHHH-HTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSE
T ss_pred             EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CCccc-ccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCc
Confidence            8743      234566888899999999999994431  11110 11 1112222 244566665555555444444445


Q ss_pred             eEEEE
Q 023645          273 MTICQ  277 (279)
Q Consensus       273 ~~i~~  277 (279)
                      -.+++
T Consensus       189 ~~~~~  193 (201)
T PF05401_consen  189 CLLAR  193 (201)
T ss_dssp             EEEEE
T ss_pred             eEeee
Confidence            45554

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.29  E-value=7.6e-11  Score=110.93  Aligned_cols=123  Identities=16%  Similarity=0.191  Sum_probs=93.2

Q ss_pred             CCCCCCHHHHHHHH-HHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE
Q 023645           99 SQMQVSPDQAQLLA-MLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  174 (279)
Q Consensus        99 ~~~~~~~~~~~~l~-~l~~---~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~  174 (279)
                      .+.++++...+.+. .+..   ..++.+|||+|||+|..++.+++..   .+|+++|+|+++++.|+++++.+++. +++
T Consensus       273 ~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~  348 (443)
T PRK13168        273 DFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVT  348 (443)
T ss_pred             CeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceE
Confidence            34466666544333 3332   3456799999999999999999874   59999999999999999999988886 499


Q ss_pred             EEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       175 ~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++++|+.+.+.....  .+++||+|++|++.......++.+.+ ++|++++++.
T Consensus       349 ~~~~d~~~~l~~~~~--~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        349 FYHANLEEDFTDQPW--ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             EEEeChHHhhhhhhh--hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence            999999875532110  13579999999987776677766655 6888888874

>PTZ00146 fibrillarin; Provisional

Probab=99.28  E-value=8.4e-11  Score=103.37  Aligned_cols=104  Identities=15%  Similarity=0.129  Sum_probs=78.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH--HHHHhCCCCC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEAS  194 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~~~~~~~~~  194 (279)
                      +.+..+|||+|||+|+++..++..+.+.++|+++|+++.+.+...+..+.   ..++.++.+|+....  ...     .+
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~---r~NI~~I~~Da~~p~~y~~~-----~~  201 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK---RPNIVPIIEDARYPQKYRML-----VP  201 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh---cCCCEEEECCccChhhhhcc-----cC
Confidence            45678999999999999999999987678999999998766444443332   135888999986421  111     35


Q ss_pred             cEEEEEEeCCccch-HHHHHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAEKRMY-QEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~~~~~-~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .||+||+|....+. ..++..+.++|||||.+++.
T Consensus       202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence            79999999864443 34556788999999999993

>PLN02823 spermine synthase

Probab=99.28  E-value=3.6e-11  Score=108.57  Aligned_cols=105  Identities=14%  Similarity=0.234  Sum_probs=85.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC---CCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..+++||.||+|.|..+.++++..+ ..+|+.+|++++.++.|++++...+   ..++++++.+|+..++...     .+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-----~~  175 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-----DE  175 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-----CC
Confidence            3678999999999999998887543 4689999999999999999986432   2468999999999988653     57


Q ss_pred             cEEEEEEeCCcc---------chHHHHH-HHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAEKR---------MYQEYFE-LLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~~~---------~~~~~l~-~~~~~Lk~gG~lv~d  228 (279)
                      +||+||+|....         ...++++ .+.+.|+|||++++.
T Consensus       176 ~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        176 KFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             CccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            899999995321         1346787 889999999999885

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.28  E-value=3.5e-11  Score=106.11  Aligned_cols=94  Identities=22%  Similarity=0.226  Sum_probs=73.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCC--CEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPES--GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ...+|||+|||+|..+..+++.++..  ..++|+|+|+.+++.|++..      .++.+.++|+.+. +.     .+++|
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p~-----~~~sf  152 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-PF-----ADQSL  152 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-CC-----cCCce
Confidence            44689999999999999999877532  47999999999999987653      2478888888653 21     15789


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+|+.....    ..++++.+.|||||.+++-
T Consensus       153 D~I~~~~~~----~~~~e~~rvLkpgG~li~~  180 (272)
T PRK11088        153 DAIIRIYAP----CKAEELARVVKPGGIVITV  180 (272)
T ss_pred             eEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence            999975443    2357889999999999974

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.28  E-value=5.1e-11  Score=104.57  Aligned_cols=105  Identities=16%  Similarity=0.254  Sum_probs=77.5

Q ss_pred             CCCEEEEEcCccCH----HHHHHHHHCCC----CCEEEEEeCChhHHHHHHHHHH----HhC------------------
Q 023645          119 GAQRCIEVGVYTGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYE----RAG------------------  168 (279)
Q Consensus       119 ~~~~VLEiG~G~G~----~t~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~----~~g------------------  168 (279)
                      ++.+|+|+|||+|.    .++.+++..+.    +.+|+|+|+|+.+++.|++..-    ..+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45699999999996    45556665442    4689999999999999987531    001                  


Q ss_pred             ----CCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          169 ----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       169 ----~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                          +.++|+|.++|..+....      .++||+|++...     .......++.+.+.|+|||++++-.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~------~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPP------LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCc------cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                224689999998764221      478999998643     2345578999999999999999853

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.27  E-value=5.7e-11  Score=95.97  Aligned_cols=108  Identities=20%  Similarity=0.332  Sum_probs=85.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      +.+|||+|||.|.....+++.-= .+.++|+|.++++++.|+...++.++.+.|+|.+.|..+. ...     .++||+|
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~-----~~qfdlv  140 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFL-----SGQFDLV  140 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-ccc-----ccceeEE
Confidence            34999999999999999887522 3569999999999999999999999999999999998753 122     5778877


Q ss_pred             EE---------eCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          200 FV---------DAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       200 ~i---------d~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      .-         .+.  ......|+..+.++|+|||+++|..+.|.-
T Consensus       141 lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~  186 (227)
T KOG1271|consen  141 LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK  186 (227)
T ss_pred             eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH
Confidence            52         111  222356788888999999999999998864

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.26  E-value=9.4e-11  Score=100.06  Aligned_cols=100  Identities=15%  Similarity=0.167  Sum_probs=80.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||+|||+|..+..++..   +.+|+|+|+++++++.|++++...+..+++++.++|+.+.         .++|
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~f  120 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEF  120 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCc
Confidence            345789999999999999999874   4699999999999999999998777666799999998643         3689


Q ss_pred             EEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+|++...     .......+..+.+++++++++.+.
T Consensus       121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       121 DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            99986432     233556788888888887777764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.26  E-value=4e-11  Score=113.83  Aligned_cols=110  Identities=18%  Similarity=0.249  Sum_probs=83.2

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH-HHHHHhCC
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNG  191 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~~~~~~  191 (279)
                      ..+...++.+|||||||+|..+..+++..   .+|+++|+++++++.+++.   .+...+++++++|+.+. ++ +    
T Consensus        31 ~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~-~----   99 (475)
T PLN02336         31 SLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLN-I----   99 (475)
T ss_pred             hhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccC-C----
Confidence            33344456799999999999999999863   5999999999999877653   23334689999998532 11 1    


Q ss_pred             CCCcEEEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          192 EASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       192 ~~~~fDlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      .+++||+|++....     .....+++.+.+.|+|||++++.+..+.
T Consensus       100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~  146 (475)
T PLN02336        100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH  146 (475)
T ss_pred             CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence            14789999987542     2256789999999999999999876654

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.25  E-value=1e-10  Score=99.72  Aligned_cols=114  Identities=16%  Similarity=0.123  Sum_probs=81.8

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC------------
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------------  169 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~------------  169 (279)
                      ..++...+++..+ ...++.+|||+|||.|..+++||+.   +.+|+|+|+++.+++.+.+   +.++            
T Consensus        21 ~p~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~   93 (218)
T PRK13255         21 EVNPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEH   93 (218)
T ss_pred             CCCHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccc
Confidence            3444444444332 1234569999999999999999975   6799999999999987642   2222            


Q ss_pred             --CCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE-----eCCccchHHHHHHHHccCCCCcEEEE
Q 023645          170 --SHKVKIKHGLAADSLKALILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       170 --~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i-----d~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                        ..+|++.++|+.+..+..     .+.||+|+-     ..+.+....+++.+.++|+|||++++
T Consensus        94 ~~~~~v~~~~~D~~~l~~~~-----~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255         94 YQAGEITIYCGDFFALTAAD-----LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             cccCceEEEECcccCCCccc-----CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence              246899999998753321     368999983     33455677899999999999986444

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.25  E-value=1.8e-10  Score=108.10  Aligned_cols=121  Identities=18%  Similarity=0.217  Sum_probs=91.3

Q ss_pred             CCCCCHHHHHHHH-HHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEE
Q 023645          100 QMQVSPDQAQLLA-MLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (279)
Q Consensus       100 ~~~~~~~~~~~l~-~l~~---~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~  175 (279)
                      +.+.++...+.+. .+..   ..++.+|||+|||+|..++.+++..   .+|+++|+++++++.|+++++.+++. ++++
T Consensus       269 F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~  344 (431)
T TIGR00479       269 FFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIA-NVEF  344 (431)
T ss_pred             eeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEE
Confidence            4455555544333 2222   3456799999999999999999863   58999999999999999999998875 5999


Q ss_pred             EEcChhhHHHHHHhCCCCCcEEEEEEeCCccc-hHHHHHHHHccCCCCcEEEE
Q 023645          176 KHGLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       176 ~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~-~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +.+|+.+.++.+...  ..+||+|++|++... ...+++.+. .++|++++++
T Consensus       345 ~~~d~~~~l~~~~~~--~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyv  394 (431)
T TIGR00479       345 LAGTLETVLPKQPWA--GQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYV  394 (431)
T ss_pred             EeCCHHHHHHHHHhc--CCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEE
Confidence            999998766543211  357999999998655 566666655 4789888776

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK03612 spermidine synthase; Provisional

Probab=99.25  E-value=3.8e-11  Score=114.94  Aligned_cols=106  Identities=19%  Similarity=0.300  Sum_probs=84.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHH--HHHh---CC-CCcEEEEEcChhhHHHHHHhCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERA---GV-SHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~---g~-~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      .++++|||||||+|..+..+++. +...+++++|+++++++.++++  +...   .+ +++++++.+|+.+.+...    
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~----  370 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL----  370 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC----
Confidence            46789999999999999998874 4237999999999999999994  3321   12 357999999999877654    


Q ss_pred             CCCcEEEEEEeCCccc--------hHHHHHHHHccCCCCcEEEEeC
Q 023645          192 EASSYDFAFVDAEKRM--------YQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~--------~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                       .++||+|++|.....        ..++++.+.+.|+|||++++..
T Consensus       371 -~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        371 -AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             -CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence             578999999965221        3468899999999999999864

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.24  E-value=1.7e-10  Score=98.61  Aligned_cols=103  Identities=20%  Similarity=0.245  Sum_probs=83.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      .+.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++...+.. ++++..+|+.+.....     .++||+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~-----~~~~D~  115 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG-----AKSFDV  115 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC-----CCCccE
Confidence            4679999999999999988875   357999999999999999998876653 4889989887654321     368999


Q ss_pred             EEEeCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       199 I~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |++...   ..+....++.+.+.|+|||++++...
T Consensus       116 i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       116 VTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             EEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            998643   44567889999999999999998654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.24  E-value=1.1e-10  Score=97.80  Aligned_cols=101  Identities=23%  Similarity=0.355  Sum_probs=84.9

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i  201 (279)
                      .+||||||.|.+.+.+|...| +..++|+|+....+..+.+.+...++.+ +.++++|+...+..+..   ++++|.|++
T Consensus        20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~---~~~v~~i~i   94 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFP---PGSVDRIYI   94 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHST---TTSEEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhccc---CCchheEEE
Confidence            899999999999999999988 7899999999999999999999999875 99999999988877753   478999988


Q ss_pred             eCC---c--c------chHHHHHHHHccCCCCcEEEE
Q 023645          202 DAE---K--R------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       202 d~~---~--~------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ..+   .  .      -...+++.+.+.|+|||.|.+
T Consensus        95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~  131 (195)
T PF02390_consen   95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF  131 (195)
T ss_dssp             ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred             eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence            643   1  1      257899999999999999877

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.23  E-value=1.2e-10  Score=97.00  Aligned_cols=103  Identities=15%  Similarity=0.196  Sum_probs=74.4

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG  191 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~  191 (279)
                      +....++.+|||+|||+|..+..++......++|+++|+++.+           .. .+++++++|+.+.  ++.+....
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~   94 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERV   94 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHh
Confidence            3444677899999999999999999887546799999999864           12 2478888887542  12221111


Q ss_pred             CCCcEEEEEEeCCc--------c------chHHHHHHHHccCCCCcEEEEe
Q 023645          192 EASSYDFAFVDAEK--------R------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       192 ~~~~fDlI~id~~~--------~------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..++||+|+++...        .      .....++.+.+.|+|||.+++.
T Consensus        95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            24689999997531        0      1256788899999999999985

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.23  E-value=2.2e-10  Score=107.68  Aligned_cols=128  Identities=22%  Similarity=0.277  Sum_probs=101.2

Q ss_pred             CCCHHHHHHHHHHH--hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          102 QVSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       102 ~~~~~~~~~l~~l~--~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      .++.....+...++  ...++.+|||+++|.|.-|..++..++..+.|+++|+++..++..++++++.|+.+ +.+...|
T Consensus        94 yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D  172 (470)
T PRK11933         94 YIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFD  172 (470)
T ss_pred             EEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCc
Confidence            34444555555555  55678899999999999999999998767899999999999999999999999975 8888899


Q ss_pred             hhhHHHHHHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          180 AADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       180 ~~~~l~~~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      +.......     .+.||.|++|++...                         ..+.++.+.++|||||+||...+.+.-
T Consensus       173 ~~~~~~~~-----~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~  247 (470)
T PRK11933        173 GRVFGAAL-----PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR  247 (470)
T ss_pred             hhhhhhhc-----hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence            86543333     467999999976220                         245777888999999999998776654


Q ss_pred             c
Q 023645          235 K  235 (279)
Q Consensus       235 ~  235 (279)
                      .
T Consensus       248 e  248 (470)
T PRK11933        248 E  248 (470)
T ss_pred             H
Confidence            3

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.22  E-value=1.4e-10  Score=95.09  Aligned_cols=113  Identities=12%  Similarity=0.047  Sum_probs=85.6

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++.+|||||||+|..+..+++.   .++++++|+++.+++.+++++..   .++++++++|+.+....      +.+
T Consensus        10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~------~~~   77 (169)
T smart00650       10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP------KLQ   77 (169)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc------ccC
Confidence            3445679999999999999999986   46999999999999999998853   34699999999875321      346


Q ss_pred             EEEEEEeCCccchHHHHHHHHcc--CCCCcEEEEeCCCCCCcccCcc
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQL--IRVGGIIVIDNVLWHGKVADQM  240 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~--Lk~gG~lv~dd~~~~g~~~~~~  240 (279)
                      ||.|+.+.+.......+..+...  +.++|++++..-........|.
T Consensus        78 ~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~  124 (169)
T smart00650       78 PYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPG  124 (169)
T ss_pred             CCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCC
Confidence            99999998766555666666533  4588999987665544444443

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.22  E-value=2.5e-10  Score=97.84  Aligned_cols=98  Identities=20%  Similarity=0.222  Sum_probs=75.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...+..+++++..+|.. .   .     .++||
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-~---~-----~~~fD  129 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE-S---L-----LGRFD  129 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch-h---c-----cCCcC
Confidence            45679999999999999999875   35799999999999999999988877667999999842 1   1     47899


Q ss_pred             EEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +|++...     .......++.+.+.+++++++.+
T Consensus       130 ~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        130 TVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             EEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence            9987543     22345567777776655555443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.21  E-value=1.5e-10  Score=101.38  Aligned_cols=117  Identities=17%  Similarity=0.211  Sum_probs=84.7

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (279)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~  190 (279)
                      +...+....+++|||||||.|+.+..|+..-+  ..|+|+|.++...-..+-.-+-.|....+.+. ....+.++.    
T Consensus       107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~----  179 (315)
T PF08003_consen  107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN----  179 (315)
T ss_pred             HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc----
Confidence            33344456789999999999999999998743  57999999998765544433333444333333 223334443    


Q ss_pred             CCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 023645          191 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (279)
Q Consensus       191 ~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~  236 (279)
                        .+.||+||+-+.   ..+....+..+...|++||.+|++..+..|.-
T Consensus       180 --~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~  226 (315)
T PF08003_consen  180 --LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDE  226 (315)
T ss_pred             --cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCC
Confidence              378999998775   56678889999999999999999988877754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.21  E-value=2.1e-10  Score=97.93  Aligned_cols=102  Identities=20%  Similarity=0.297  Sum_probs=88.2

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      ..+||||||.|.+...+|...| +..++|||+....+..|.+.+.+.++. ++.++++|+.+.+..+..   +++.|-|+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~---~~sl~~I~  124 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP---DGSLDKIY  124 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC---CCCeeEEE
Confidence            4799999999999999999988 679999999999999999999999997 599999999998888753   34788887


Q ss_pred             Ee---CCcc--------chHHHHHHHHccCCCCcEEEE
Q 023645          201 VD---AEKR--------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       201 id---~~~~--------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +.   +++.        -+..+++.+.+.|+|||.|.+
T Consensus       125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~  162 (227)
T COG0220         125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF  162 (227)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence            64   4411        167899999999999999987

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.21  E-value=1e-10  Score=96.43  Aligned_cols=101  Identities=19%  Similarity=0.179  Sum_probs=79.7

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE-EEEcChhhHHHHHHhCCCCCcEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~-~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ...|||+|||||..-.+.--  .+..+||++|.++.|-+.+.+.+.+....+ +. |++++..+ ++++.    ++++|.
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~-l~~l~----d~s~Dt  148 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGEN-LPQLA----DGSYDT  148 (252)
T ss_pred             ccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhc-Ccccc----cCCeee
Confidence            34689999999976543321  147899999999999999999988875544 65 99998864 44442    789999


Q ss_pred             EEEe---CCccchHHHHHHHHccCCCCcEEEEe
Q 023645          199 AFVD---AEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       199 I~id---~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |++.   +..++..+.++++.++|||||.+++=
T Consensus       149 VV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  149 VVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             EEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            9754   56788889999999999999999873

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.20  E-value=2.7e-10  Score=83.54  Aligned_cols=99  Identities=22%  Similarity=0.338  Sum_probs=78.5

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i  201 (279)
                      +|+|+|||.|..+..++. . ...+++++|.+++....+++..... ...++++..+|..+.....     .++||+|++
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~d~i~~   72 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEA-----DESFDVIIS   72 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcccc-----CCceEEEEE
Confidence            489999999999999887 2 3679999999999999988644433 3346899999987764311     478999999


Q ss_pred             eCCcc----chHHHHHHHHccCCCCcEEEEe
Q 023645          202 DAEKR----MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       202 d~~~~----~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +....    ....+++.+.+.|++||.+++.
T Consensus        73 ~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          73 DPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            87633    4677889999999999999885

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK06202 hypothetical protein; Provisional

Probab=99.20  E-value=1.6e-10  Score=99.48  Aligned_cols=113  Identities=13%  Similarity=0.141  Sum_probs=78.0

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC---CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (279)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (279)
                      ..+.......++.+|||||||+|..+..+++..+   .+.+|+++|+++++++.|++.....    ++++..+++.+. +
T Consensus        50 ~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~  124 (232)
T PRK06202         50 RLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-V  124 (232)
T ss_pred             HHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-c
Confidence            3333333445677999999999999998886532   2459999999999999998876533    245555544322 2


Q ss_pred             HHHhCCCCCcEEEEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          186 ALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       186 ~~~~~~~~~~fDlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ..     +++||+|++....+     ....+++++.++++  |.+++.+...+
T Consensus       125 ~~-----~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        125 AE-----GERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             cc-----CCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence            11     57899999875422     23468889989887  56677676654

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.18  E-value=7.2e-10  Score=101.62  Aligned_cols=125  Identities=19%  Similarity=0.153  Sum_probs=92.0

Q ss_pred             CCCCCCCCHHHHHHHHHHH-hhcC--CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcE
Q 023645           97 RGSQMQVSPDQAQLLAMLV-QILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  173 (279)
Q Consensus        97 ~~~~~~~~~~~~~~l~~l~-~~~~--~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v  173 (279)
                      +.++.++++.+.+.+...+ ....  +.+|||++||+|.+++.+++..   .+|+++|.++.+++.|++|++.+++. ++
T Consensus       181 ~~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v  256 (362)
T PRK05031        181 ENSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NV  256 (362)
T ss_pred             CCCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cE
Confidence            3556777777665555443 3222  3579999999999999999874   48999999999999999999998886 59


Q ss_pred             EEEEcChhhHHHHHHhCCC----------CCcEEEEEEeCCccc-hHHHHHHHHccCCCCcEEEEe
Q 023645          174 KIKHGLAADSLKALILNGE----------ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       174 ~~~~gd~~~~l~~~~~~~~----------~~~fDlI~id~~~~~-~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +++.+|+.+.++.+.....          ..+||+||+|++... ....++.+.+   +++++++.
T Consensus       257 ~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS  319 (362)
T PRK05031        257 QIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS  319 (362)
T ss_pred             EEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence            9999999887765432110          125899999998655 3445555544   67777663

>PHA03412 putative methyltransferase; Provisional

Probab=99.18  E-value=4.9e-10  Score=95.50  Aligned_cols=123  Identities=13%  Similarity=0.117  Sum_probs=86.3

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC--CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE
Q 023645          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (279)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~  177 (279)
                      ...++...+..+.  .....+.+|||+|||+|..++.+++.++  +..+|+++|+++.+++.|+++..      ++.+++
T Consensus        32 qFfTP~~iAr~~~--i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~  103 (241)
T PHA03412         32 AFFTPIGLARDFT--IDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWIN  103 (241)
T ss_pred             ccCCCHHHHHHHH--HhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEE
Confidence            3444555544432  2233467999999999999999988653  24699999999999999998753      378999


Q ss_pred             cChhhHHHHHHhCCCCCcEEEEEEeCCcc-----c----------hHHHHHHHHccCCCCcEEEEeCCC---CCCccc
Q 023645          178 GLAADSLKALILNGEASSYDFAFVDAEKR-----M----------YQEYFELLLQLIRVGGIIVIDNVL---WHGKVA  237 (279)
Q Consensus       178 gd~~~~l~~~~~~~~~~~fDlI~id~~~~-----~----------~~~~l~~~~~~Lk~gG~lv~dd~~---~~g~~~  237 (279)
                      +|+....  .     +++||+|+.+++..     +          ...+++.+.+++++|+.|+=.+++   ++|...
T Consensus       104 ~D~~~~~--~-----~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~  174 (241)
T PHA03412        104 ADALTTE--F-----DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHY  174 (241)
T ss_pred             cchhccc--c-----cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccc
Confidence            9986532  1     46899999987611     1          334677778888888875544443   555543

>PLN02672 methionine S-methyltransferase

Probab=99.16  E-value=5.4e-10  Score=113.34  Aligned_cols=103  Identities=16%  Similarity=0.122  Sum_probs=81.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC---------------CCcEEEEEcChhhHH
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---------------SHKVKIKHGLAADSL  184 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~---------------~~~v~~~~gd~~~~l  184 (279)
                      +.+|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|.+.+++               .++++++++|..+.+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            46899999999999999999876 57999999999999999999987643               257999999998655


Q ss_pred             HHHHhCCCCCcEEEEEEeCCc----------------c---------------------c----hHHHHHHHHccCCCCc
Q 023645          185 KALILNGEASSYDFAFVDAEK----------------R---------------------M----YQEYFELLLQLIRVGG  223 (279)
Q Consensus       185 ~~~~~~~~~~~fDlI~id~~~----------------~---------------------~----~~~~l~~~~~~Lk~gG  223 (279)
                      ...     ..+||+|+.+.+.                +                     +    +...++.+.++|+|||
T Consensus       198 ~~~-----~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG  272 (1082)
T PLN02672        198 RDN-----NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMG  272 (1082)
T ss_pred             ccc-----CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCC
Confidence            321     2479999987540                0                     0    1345566668999999


Q ss_pred             EEEEe
Q 023645          224 IIVID  228 (279)
Q Consensus       224 ~lv~d  228 (279)
                      .+++.
T Consensus       273 ~l~lE  277 (1082)
T PLN02672        273 IMIFN  277 (1082)
T ss_pred             EEEEE
Confidence            99985

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.15  E-value=1.9e-09  Score=94.94  Aligned_cols=104  Identities=21%  Similarity=0.316  Sum_probs=89.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--C-CCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~-~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      .+++||-||-|.|..+..+++..+ -.+++.+|+++..++.+++.+....  . ..|++++.+|..+++...     ..+
T Consensus        76 ~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-----~~~  149 (282)
T COG0421          76 NPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-----EEK  149 (282)
T ss_pred             CCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-----CCc
Confidence            447999999999999999998765 5799999999999999999987543  2 378999999999998875     458


Q ss_pred             EEEEEEeCCcc-c------hHHHHHHHHccCCCCcEEEEe
Q 023645          196 YDFAFVDAEKR-M------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       196 fDlI~id~~~~-~------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ||+|++|.... .      ..++++.+.+.|+++|+++..
T Consensus       150 fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         150 FDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            99999997522 2      478999999999999999996

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=99.15  E-value=3e-10  Score=94.77  Aligned_cols=159  Identities=16%  Similarity=0.172  Sum_probs=89.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHH---CCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      -.|...-.+..++...+|+.|+|+|...|.+++++|+.   +...++|+|||++.....  ++.++...+.++|++++||
T Consensus        16 q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gd   93 (206)
T PF04989_consen   16 QYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGD   93 (206)
T ss_dssp             S-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-
T ss_pred             cCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECC
Confidence            35666667778888889999999999999999998764   444789999999654321  2333445667899999999


Q ss_pred             hhhH--HHHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccC----cccCChhhHHHHH
Q 023645          180 AADS--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD----QMVNDAKTISIRN  251 (279)
Q Consensus       180 ~~~~--l~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~----~~~~~~~~~~~~~  251 (279)
                      ..+.  +......-......+|+.|+.  +.+....|+...+++++|+++|+.|..+......    +.+.. .......
T Consensus        94 s~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~-g~~p~~a  172 (206)
T PF04989_consen   94 SIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGP-GNNPKTA  172 (206)
T ss_dssp             SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS--------------HHH
T ss_pred             CCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhh-hhHHHHH
Confidence            8653  222211111345678888876  5667888889999999999999999875443322    12211 1112344


Q ss_pred             HHHHhhhCCCeEE
Q 023645          252 FNKNLMEDERVSI  264 (279)
Q Consensus       252 ~~~~l~~~~~~~~  264 (279)
                      ..++|.++++|+.
T Consensus       173 v~~fL~~~~~f~i  185 (206)
T PF04989_consen  173 VKEFLAEHPDFEI  185 (206)
T ss_dssp             HHHHHHTTTTEEE
T ss_pred             HHHHHHHCCCcEe
Confidence            4455567787654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK05785 hypothetical protein; Provisional

Probab=99.14  E-value=3.3e-10  Score=97.24  Aligned_cols=88  Identities=13%  Similarity=0.061  Sum_probs=70.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||+|||+|..+..+++..  +++|+|+|+|++|++.|++.         ..++++|+.+. +.     .+++||+
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p~-----~d~sfD~  113 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-PF-----RDKSFDV  113 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-CC-----CCCCEEE
Confidence            46799999999999999998875  46999999999999998763         13467787643 21     2689999


Q ss_pred             EEEeCC---ccchHHHHHHHHccCCCCc
Q 023645          199 AFVDAE---KRMYQEYFELLLQLIRVGG  223 (279)
Q Consensus       199 I~id~~---~~~~~~~l~~~~~~Lk~gG  223 (279)
                      |++...   ..+....++++.+.|||.+
T Consensus       114 v~~~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        114 VMSSFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             EEecChhhccCCHHHHHHHHHHHhcCce
Confidence            998654   4567789999999999953

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=3.8e-10  Score=96.64  Aligned_cols=123  Identities=18%  Similarity=0.196  Sum_probs=98.4

Q ss_pred             cCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEE
Q 023645           96 MRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (279)
Q Consensus        96 ~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~  175 (279)
                      +++....+......++.+.++..++.+|+|-|+|+|..+.++++++.+.|+++.+|.++...+.|.+.+++.++.+++++
T Consensus        82 LphRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~  161 (314)
T KOG2915|consen   82 LPHRTQILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTV  161 (314)
T ss_pred             ccCcceEEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEE
Confidence            45444455666667778888999999999999999999999999998899999999999999999999999999999999


Q ss_pred             EEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcE
Q 023645          176 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI  224 (279)
Q Consensus       176 ~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~  224 (279)
                      .+.|+...-...    .+..+|.||+|.+..+  ..+..+.+.||.+|.
T Consensus       162 ~hrDVc~~GF~~----ks~~aDaVFLDlPaPw--~AiPha~~~lk~~g~  204 (314)
T KOG2915|consen  162 THRDVCGSGFLI----KSLKADAVFLDLPAPW--EAIPHAAKILKDEGG  204 (314)
T ss_pred             EEeecccCCccc----cccccceEEEcCCChh--hhhhhhHHHhhhcCc
Confidence            999987531111    1478999999976443  344455567777663

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.13  E-value=1.3e-09  Score=100.26  Aligned_cols=100  Identities=15%  Similarity=0.232  Sum_probs=84.9

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      ..+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++.+ +++.++|+.+.+..      ..+||+|
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~------~~~fD~V  129 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHE------ERKFDVV  129 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhh------cCCCCEE
Confidence            35899999999999999988765 4589999999999999999999998864 78999999766542      2579999


Q ss_pred             EEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          200 FVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++|+. .....+++.+...+++||++.+.
T Consensus       130 ~lDP~-Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        130 DIDPF-GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             EECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence            99975 44567888888889999999996

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=4.2e-09  Score=86.06  Aligned_cols=115  Identities=18%  Similarity=0.281  Sum_probs=83.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ..+++|+|+|||||.+++..+..-+  .+|+|+|+++++++.+++|.++  +..++.|+.+|+.+.         .+++|
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~---------~~~~d  110 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDF---------RGKFD  110 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhc---------CCccc
Confidence            4677999999999999998776533  6999999999999999999998  445699999999765         68899


Q ss_pred             EEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEE
Q 023645          198 FAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSI  264 (279)
Q Consensus       198 lI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  264 (279)
                      .+++|++.     +.-..+++.+++.-  ..+.-+++.   |              .++|.+....+-+..+
T Consensus       111 tvimNPPFG~~~rhaDr~Fl~~Ale~s--~vVYsiH~a---~--------------~~~f~~~~~~~~G~~v  163 (198)
T COG2263         111 TVIMNPPFGSQRRHADRPFLLKALEIS--DVVYSIHKA---G--------------SRDFVEKFAADLGGTV  163 (198)
T ss_pred             eEEECCCCccccccCCHHHHHHHHHhh--heEEEeecc---c--------------cHHHHHHHHHhcCCeE
Confidence            99999872     22234566665542  122222222   1              3678777766666443

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.11  E-value=2.3e-09  Score=97.95  Aligned_cols=124  Identities=19%  Similarity=0.135  Sum_probs=90.1

Q ss_pred             CCCCCCCHHHHHHHH-HHHhhcC--CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE
Q 023645           98 GSQMQVSPDQAQLLA-MLVQILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  174 (279)
Q Consensus        98 ~~~~~~~~~~~~~l~-~l~~~~~--~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~  174 (279)
                      .++.+++....+.+. .+.+...  +.+|||+|||+|.+++.+++..   .+|+++|+++++++.|+++++.+++.+ ++
T Consensus       173 ~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~-v~  248 (353)
T TIGR02143       173 NSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDN-VQ  248 (353)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCc-EE
Confidence            445667776655444 3334332  3579999999999999999875   489999999999999999999998864 99


Q ss_pred             EEEcChhhHHHHHHhC-------C-C--CCcEEEEEEeCCccc-hHHHHHHHHccCCCCcEEEEe
Q 023645          175 IKHGLAADSLKALILN-------G-E--ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       175 ~~~gd~~~~l~~~~~~-------~-~--~~~fDlI~id~~~~~-~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++.+|+.+.++.....       + .  ...||+||+|++... ....++.+.+   |++++++.
T Consensus       249 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs  310 (353)
T TIGR02143       249 IIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS  310 (353)
T ss_pred             EEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence            9999998877542110       0 0  124899999998555 3455565544   67777773

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.10  E-value=8.9e-10  Score=92.39  Aligned_cols=100  Identities=20%  Similarity=0.265  Sum_probs=77.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++..|+|+.||.|.+++.+++..+ ..+|+++|++|.+++..+++++.+++.+++.++++|+.+.++       ...||
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-------~~~~d  171 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-------EGKFD  171 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT-EE
T ss_pred             CcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-------ccccC
Confidence            4577999999999999999998543 579999999999999999999999999999999999988776       47899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      -|+++.+.... .++..+..++++||++-
T Consensus       172 rvim~lp~~~~-~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  172 RVIMNLPESSL-EFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEEE--TSSGG-GGHHHHHHHEEEEEEEE
T ss_pred             EEEECChHHHH-HHHHHHHHHhcCCcEEE
Confidence            99998764443 68889999999999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PHA03411 putative methyltransferase; Provisional

Probab=99.06  E-value=1.5e-09  Score=94.64  Aligned_cols=97  Identities=9%  Similarity=0.038  Sum_probs=74.3

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .....+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++.      +++++++|+.+...       ..+|
T Consensus        62 ~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~~-------~~kF  127 (279)
T PHA03411         62 AHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFES-------NEKF  127 (279)
T ss_pred             cccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhcc-------cCCC
Confidence            33456999999999999998887654 4699999999999999988642      48899999986532       4689


Q ss_pred             EEEEEeCCccc-----------------------hHHHHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAEKRM-----------------------YQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~~~~-----------------------~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |+|+++++...                       ...++.....+|+|+|.+.+
T Consensus       128 DlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~  181 (279)
T PHA03411        128 DVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF  181 (279)
T ss_pred             cEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence            99999875211                       13455555688999997655

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.06  E-value=1.1e-09  Score=95.07  Aligned_cols=106  Identities=21%  Similarity=0.344  Sum_probs=84.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC---CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---SHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~---~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..+++||-||-|.|..+..+.+.. +..+++.+|+++..++.+++.+.....   ++|++++.+|+..++...     .+
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-----~~  148 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-----QE  148 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----SS
T ss_pred             CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----cC
Confidence            368899999999999999888653 357999999999999999998875432   468999999999888765     45


Q ss_pred             -cEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEeC
Q 023645          195 -SYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       195 -~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                       +||+|++|....       ...++++.+.+.|+|||++++..
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence             899999986521       24689999999999999999864

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=3.5e-09  Score=96.73  Aligned_cols=131  Identities=19%  Similarity=0.296  Sum_probs=103.3

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      ..++....++...++...++.+|||+.++.|.=|..++..+.. +..|+++|.++..++..++++++.|..+ +.+++.|
T Consensus       138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d  216 (355)
T COG0144         138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKD  216 (355)
T ss_pred             EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecc
Confidence            3455666777777888888999999999999999999999874 3456999999999999999999999987 8888888


Q ss_pred             hhhHHHHHHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          180 AADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       180 ~~~~l~~~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      +........   ..++||.|++|++..                         ...+.++.++++|||||+|+...+...-
T Consensus       217 ~~~~~~~~~---~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~  293 (355)
T COG0144         217 ARRLAELLP---GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP  293 (355)
T ss_pred             ccccccccc---ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence            754332221   023699999997511                         1355788888999999999999887665


Q ss_pred             c
Q 023645          235 K  235 (279)
Q Consensus       235 ~  235 (279)
                      .
T Consensus       294 e  294 (355)
T COG0144         294 E  294 (355)
T ss_pred             h
Confidence            4

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.06  E-value=2.7e-09  Score=87.83  Aligned_cols=112  Identities=20%  Similarity=0.377  Sum_probs=74.1

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--CCCcEEEEEcChhhHH-HHHHhCCC
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHGLAADSL-KALILNGE  192 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~v~~~~gd~~~~l-~~~~~~~~  192 (279)
                      ....+++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++.++  ...++.+..-|..+.. +...   +
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~---~  116 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL---E  116 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH---S
T ss_pred             hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc---c
Confidence            356788999999999999999998743 57999999998 9999999999876  5567888877764422 2221   1


Q ss_pred             CCcEEEEEEeC---CccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          193 ASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       193 ~~~fDlI~id~---~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      ..+||+|+...   ..+.+..+++.+.++|+++|.+++-...+
T Consensus       117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            46899998642   35667888999999999998866654433

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.05  E-value=3.4e-09  Score=97.09  Aligned_cols=101  Identities=13%  Similarity=0.162  Sum_probs=87.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      .+|||+.||+|..++.++...+...+|+++|+++++++.+++|++.++.. ++++.++|+...+...     ..+||+|+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~-----~~~fDvId  119 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR-----NRKFHVID  119 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh-----CCCCCEEE
Confidence            48999999999999999987542358999999999999999999988876 4899999998877654     46799999


Q ss_pred             EeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          201 VDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       201 id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +|+ ......+++.+.+.+++||+|.+.
T Consensus       120 lDP-fGs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       120 IDP-FGTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             eCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence            998 555568999999999999999986

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.04  E-value=6e-09  Score=92.71  Aligned_cols=99  Identities=16%  Similarity=0.197  Sum_probs=76.2

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .+++.....+...+...++.+|||||||+|..|..++..   ..+|+++|+++.+++.+++++...+..++++++++|+.
T Consensus        19 L~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal   95 (294)
T PTZ00338         19 LKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDAL   95 (294)
T ss_pred             cCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHh
Confidence            345555444555555566789999999999999999886   35899999999999999999987776567999999997


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccchHHH
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRMYQEY  211 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~  211 (279)
                      +..        ...||.|+.+.+..-....
T Consensus        96 ~~~--------~~~~d~VvaNlPY~Istpi  117 (294)
T PTZ00338         96 KTE--------FPYFDVCVANVPYQISSPL  117 (294)
T ss_pred             hhc--------ccccCEEEecCCcccCcHH
Confidence            642        2568999988775443333

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=99.04  E-value=1e-08  Score=90.94  Aligned_cols=149  Identities=19%  Similarity=0.247  Sum_probs=110.9

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .+......+...++...++..|||+.++.|.-|..++..+...+.|++.|+++..+...++++++.|..+ +.+...|+.
T Consensus        68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~  146 (283)
T PF01189_consen   68 YVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADAR  146 (283)
T ss_dssp             EEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHH
T ss_pred             EecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccc
Confidence            3444555556666677788899999999999999999999878999999999999999999999999875 777778887


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccC----CCCcEEEEeCCCC
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLI----RVGGIIVIDNVLW  232 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~L----k~gG~lv~dd~~~  232 (279)
                      ...+...    ...||.|++|++..                         ...+.++.+.+++    ||||++|..-+-.
T Consensus       147 ~~~~~~~----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~  222 (283)
T PF01189_consen  147 KLDPKKP----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL  222 (283)
T ss_dssp             HHHHHHH----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred             ccccccc----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence            7654442    34699999997511                         1245678888999    9999999977654


Q ss_pred             CCcccCcccCChhhHHHHHHHHHhhhCCCeEEEE
Q 023645          233 HGKVADQMVNDAKTISIRNFNKNLMEDERVSISM  266 (279)
Q Consensus       233 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  266 (279)
                      .-...+        .-++.|++   ..++++.+-
T Consensus       223 ~~eENE--------~vV~~fl~---~~~~~~l~~  245 (283)
T PF01189_consen  223 SPEENE--------EVVEKFLK---RHPDFELVP  245 (283)
T ss_dssp             HGGGTH--------HHHHHHHH---HSTSEEEEC
T ss_pred             HHHHHH--------HHHHHHHH---hCCCcEEEe
Confidence            433221        13455554   567776553

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.04  E-value=7.3e-09  Score=92.90  Aligned_cols=142  Identities=16%  Similarity=0.291  Sum_probs=93.6

Q ss_pred             ccccccCCCChhHHHHHHhc--------cCChHHHHHHHHHHHc---------cCCCCC-CCCHHHHHHHHHHHhhc---
Q 023645           60 YSNKQVISVTPPLYDYILRN--------VREPEILRQLREETAG---------MRGSQM-QVSPDQAQLLAMLVQIL---  118 (279)
Q Consensus        60 ~~~~~~~~~~~~l~~Y~~~~--------~~~~~~l~~~~~~~~~---------~~~~~~-~~~~~~~~~l~~l~~~~---  118 (279)
                      |.........|++..|+...        ...++.+.++-+.-..         .|.... ..-|.-..++..+.+..   
T Consensus        26 ~df~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~  105 (321)
T PRK11727         26 YDFAALIQSHPELKPFVILNPYGEQSIDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAED  105 (321)
T ss_pred             CCHHHHHHhChhHHHHhccCCCCCeeeeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhccc
Confidence            44444556678888888753        2345555444443321         222221 12233455555444431   


Q ss_pred             --------CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-CCCCcEEEEEc-ChhhHHHHHH
Q 023645          119 --------GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHG-LAADSLKALI  188 (279)
Q Consensus       119 --------~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~g-d~~~~l~~~~  188 (279)
                              ...++||||||+|.....++...+ +.+++++|+++.+++.|+++++.+ ++.+++++++. +..+....+.
T Consensus       106 ~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~  184 (321)
T PRK11727        106 NGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII  184 (321)
T ss_pred             ccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc
Confidence                    357999999999999888887766 689999999999999999999999 79888998753 4333332221


Q ss_pred             hCCCCCcEEEEEEeCC
Q 023645          189 LNGEASSYDFAFVDAE  204 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~  204 (279)
                      .  ..+.||+|+++++
T Consensus       185 ~--~~~~fDlivcNPP  198 (321)
T PRK11727        185 H--KNERFDATLCNPP  198 (321)
T ss_pred             c--cCCceEEEEeCCC
Confidence            1  1468999999987

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.04  E-value=2.9e-09  Score=90.70  Aligned_cols=156  Identities=14%  Similarity=0.142  Sum_probs=99.0

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH-hC--------
Q 023645           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-AG--------  168 (279)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~g--------  168 (279)
                      ...-.++|...+++.. ....++.+||..|||.|.-..+|++.   +.+|+|+|+++.+++.+.+.... ..        
T Consensus        17 w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~   92 (218)
T PF05724_consen   17 WDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFK   92 (218)
T ss_dssp             T--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEE
T ss_pred             CCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCccccccee
Confidence            3334567777777666 34456679999999999999999986   57999999999999887432211 00        


Q ss_pred             --CCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeC-----CccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCccc
Q 023645          169 --VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV  241 (279)
Q Consensus       169 --~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~-----~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~  241 (279)
                        ...+|++.+||+++..+..     .++||+|+=-+     +......|.+.+.++|+|||.+++--+.++....   .
T Consensus        93 ~~~~~~i~~~~gDfF~l~~~~-----~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~---~  164 (218)
T PF05724_consen   93 RYQAGRITIYCGDFFELPPED-----VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM---E  164 (218)
T ss_dssp             EETTSSEEEEES-TTTGGGSC-----HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS---S
T ss_pred             eecCCceEEEEcccccCChhh-----cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC---C
Confidence              1236899999998754321     25899998432     3667889999999999999995443343432211   1


Q ss_pred             CChhhHHHHHHHHHhhhCCCeEEEEe
Q 023645          242 NDAKTISIRNFNKNLMEDERVSISMV  267 (279)
Q Consensus       242 ~~~~~~~~~~~~~~l~~~~~~~~~~l  267 (279)
                      ..+-.....++.+.+.  +.+++..+
T Consensus       165 GPPf~v~~~ev~~l~~--~~f~i~~l  188 (218)
T PF05724_consen  165 GPPFSVTEEEVRELFG--PGFEIEEL  188 (218)
T ss_dssp             SSS----HHHHHHHHT--TTEEEEEE
T ss_pred             CcCCCCCHHHHHHHhc--CCcEEEEE
Confidence            2233333444555544  66665543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=4.1e-09  Score=98.18  Aligned_cols=124  Identities=21%  Similarity=0.229  Sum_probs=99.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc
Q 023645           97 RGSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  172 (279)
Q Consensus        97 ~~~~~~~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~  172 (279)
                      ++++.++++...+-|...+.    ..+.+++||+-||.|.+++.+|+..   .+|+|+|+++++++.|+++++.++..+ 
T Consensus       267 ~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N-  342 (432)
T COG2265         267 PRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDN-  342 (432)
T ss_pred             CCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCc-
Confidence            34678888888777766543    3456799999999999999999653   599999999999999999999999987 


Q ss_pred             EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchH-HHHHHHHccCCCCcEEEEe
Q 023645          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~-~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++|..+++.+..+...   +...+|.|++|++..... .+++.+ ..++|..++.+.
T Consensus       343 ~~f~~~~ae~~~~~~~---~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS  395 (432)
T COG2265         343 VEFIAGDAEEFTPAWW---EGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS  395 (432)
T ss_pred             EEEEeCCHHHHhhhcc---ccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence            9999999998876642   135889999999977776 445544 556777777763

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.03  E-value=3.8e-09  Score=87.41  Aligned_cols=121  Identities=14%  Similarity=0.179  Sum_probs=89.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCC--------EEEEEeCChhHHHHHHHHHHHhCCCCcE
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESG--------CLVACERDARSLEVAKKYYERAGVSHKV  173 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~--------~v~~iD~s~~~~~~a~~~~~~~g~~~~v  173 (279)
                      .+.+..+..|..++...++..|||--||+|.+.+..+.......        +++|.|+++++++.|++|++.+|+.+.+
T Consensus        11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i   90 (179)
T PF01170_consen   11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI   90 (179)
T ss_dssp             SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred             CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence            56778888888888888889999999999999988776544222        4999999999999999999999999899


Q ss_pred             EEEEcChhhHHHHHHhCCCCCcEEEEEEeCCc-----------cchHHHHHHHHccCCCCcEEEEe
Q 023645          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       174 ~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~-----------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .+.++|+.+.. ..     .+.+|.|+.|.+.           .-|..+++.+.+.|++..++++.
T Consensus        91 ~~~~~D~~~l~-~~-----~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen   91 DFIQWDARELP-LP-----DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             EEEE--GGGGG-GT-----TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred             EEEecchhhcc-cc-----cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence            99999998654 11     5799999999862           22566788888999996666664

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.01  E-value=5e-09  Score=83.71  Aligned_cols=123  Identities=22%  Similarity=0.155  Sum_probs=98.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE
Q 023645           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (279)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~  177 (279)
                      ++....++-.++.+...+....+..|||+|.|+|.+|..+++..-+...++++|.+++......+.+.      .+.++.
T Consensus        27 GaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~  100 (194)
T COG3963          27 GAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIIN  100 (194)
T ss_pred             eeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------Cccccc
Confidence            44556778888888888888888899999999999999998876556789999999999988877664      367999


Q ss_pred             cChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645          178 GLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       178 gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ||+.+.-..+.+.. +..||.|++.-+     .+...++++.+...|+.||.++-
T Consensus       101 gda~~l~~~l~e~~-gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963         101 GDAFDLRTTLGEHK-GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             cchhhHHHHHhhcC-CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence            99987543343322 567999998654     44567889999999999999886

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.01  E-value=6.7e-09  Score=93.19  Aligned_cols=96  Identities=15%  Similarity=0.081  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC----CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----SHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++++..+.    ..++++..+|..+.         ++
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---------~~  211 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---------SG  211 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---------CC
Confidence            5679999999999999999975   56999999999999999999876522    23578888886432         47


Q ss_pred             cEEEEEEeCCcc-----chHHHHHHHHccCCCCcEEEE
Q 023645          195 SYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       195 ~fDlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +||+|++.....     .....++.+.+ +.+||+++.
T Consensus       212 ~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        212 KYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             CcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence            899998654321     22234555543 466777664

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.99  E-value=1.2e-09  Score=88.39  Aligned_cols=78  Identities=22%  Similarity=0.262  Sum_probs=59.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      +.|+|+.||.|..++.+|+.+.   +|++||+++..++.|+.|.+-.|+.++|+++++|+.+.++.+..   ...||+||
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~---~~~~D~vF   74 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS---NKIFDVVF   74 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------SEEE
T ss_pred             CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc---cccccEEE
Confidence            3699999999999999999854   89999999999999999999999999999999999986654311   11289999


Q ss_pred             EeCC
Q 023645          201 VDAE  204 (279)
Q Consensus       201 id~~  204 (279)
                      ++++
T Consensus        75 lSPP   78 (163)
T PF09445_consen   75 LSPP   78 (163)
T ss_dssp             E---
T ss_pred             ECCC
Confidence            9976

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.96  E-value=2.8e-09  Score=89.51  Aligned_cols=104  Identities=20%  Similarity=0.340  Sum_probs=83.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCC-CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~-~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...+.+|||.++|-|+.++..+++   ++ +|+++|.+|..++.|+-|--..++ +..++++.||+.+..+.+    +++
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~----~D~  204 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF----DDE  204 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC----Ccc
Confidence            346789999999999999988876   45 999999999999888755332233 234899999999988877    367


Q ss_pred             cEEEEEEeCCc-----c-chHHHHHHHHccCCCCcEEEE
Q 023645          195 SYDFAFVDAEK-----R-MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       195 ~fDlI~id~~~-----~-~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +||+|+.|++.     + ...++++++++.|+|||.++-
T Consensus       205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH  243 (287)
T COG2521         205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH  243 (287)
T ss_pred             ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence            89999999761     1 245788999999999999875

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.96  E-value=5.1e-09  Score=88.42  Aligned_cols=111  Identities=17%  Similarity=0.319  Sum_probs=79.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC-C--------------------------
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-S--------------------------  170 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-~--------------------------  170 (279)
                      ..++.+|||||-+|..|+.+++.+. .-.|.|+|+++..++.|+++++..-- .                          
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~  135 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR  135 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence            3567899999999999999999986 45799999999999999998763210 0                          


Q ss_pred             -------CcEEEEEcCh----hhHHHHHHhCCCCCcEEEEEEe---------CCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          171 -------HKVKIKHGLA----ADSLKALILNGEASSYDFAFVD---------AEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       171 -------~~v~~~~gd~----~~~l~~~~~~~~~~~fDlI~id---------~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                             +++.+...+.    -+++. +    ....||+|++-         ..-+....+|..++++|.|||+||+.-=
T Consensus       136 a~t~~~p~n~~f~~~n~vle~~dfl~-~----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ  210 (288)
T KOG2899|consen  136 AFTTDFPDNVWFQKENYVLESDDFLD-M----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ  210 (288)
T ss_pred             cccccCCcchhcccccEEEecchhhh-h----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence                   0111111111    11221 1    25789999863         2345688999999999999999999766


Q ss_pred             CCCC
Q 023645          231 LWHG  234 (279)
Q Consensus       231 ~~~g  234 (279)
                      -|..
T Consensus       211 pWks  214 (288)
T KOG2899|consen  211 PWKS  214 (288)
T ss_pred             chHH
Confidence            5654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.96  E-value=1.7e-09  Score=90.62  Aligned_cols=144  Identities=17%  Similarity=0.199  Sum_probs=96.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      -+++||+|||||..+..+-...   .+++|+|+|+.|++.|.+.    |+-+  ++.++++..+++..    +.++||+|
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~----~~er~DLi  192 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDL----TQERFDLI  192 (287)
T ss_pred             cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhc----cCCcccch
Confidence            5799999999999998887764   4899999999999888663    2222  44555665555433    26899999


Q ss_pred             EEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC---CCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEE-------
Q 023645          200 FVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL---WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM-------  266 (279)
Q Consensus       200 ~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~---~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------  266 (279)
                      .....   ......+|-.+..+|+|||.+.+.-=.   |.|-+..|..+-.   --+.+.+.+.+..+++++.       
T Consensus       193 ~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyA---H~~~YVr~~l~~~Gl~~i~~~~ttiR  269 (287)
T COG4976         193 VAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYA---HSESYVRALLAASGLEVIAIEDTTIR  269 (287)
T ss_pred             hhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhc---cchHHHHHHHHhcCceEEEeecccch
Confidence            75322   344566777778999999999985322   2222222221111   1244566666777887654       


Q ss_pred             ----eecCCceEEEEEC
Q 023645          267 ----VPIGDGMTICQKR  279 (279)
Q Consensus       267 ----lp~~~G~~i~~~~  279 (279)
                          -|+..++.|+||+
T Consensus       270 ~d~g~pv~G~L~iark~  286 (287)
T COG4976         270 RDAGEPVPGILVIARKK  286 (287)
T ss_pred             hhcCCCCCCceEEEecC
Confidence                4667788888874

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.94  E-value=5.2e-09  Score=90.60  Aligned_cols=107  Identities=18%  Similarity=0.211  Sum_probs=84.0

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (279)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~  190 (279)
                      +.......+.++|+|||+|.|..+..++++.| +.+++.+|. |+.++.+++       .++++++.||+.+.+      
T Consensus        92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~------  156 (241)
T PF00891_consen   92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL------  156 (241)
T ss_dssp             HHHHSTTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC------
T ss_pred             hhccccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhhh------
Confidence            33344445667999999999999999999998 889999999 888888887       568999999998543      


Q ss_pred             CCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCC--cEEEEeCCCCCCc
Q 023645          191 GEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVG--GIIVIDNVLWHGK  235 (279)
Q Consensus       191 ~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~g--G~lv~dd~~~~g~  235 (279)
                        .. +|++++...     .+.....|+.+.+.|+||  |.|++.+.+.+..
T Consensus       157 --P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~  205 (241)
T PF00891_consen  157 --PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD  205 (241)
T ss_dssp             --SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred             --cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence              24 999998654     344667899999999999  9999988876544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.94  E-value=1.6e-08  Score=94.81  Aligned_cols=102  Identities=16%  Similarity=0.205  Sum_probs=78.5

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC---CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .+.|+|+|||+|..+...+++.   ....+|++||.++.+....++.++..++.++|+++++|+.+.-.       ..+.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv  259 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV  259 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence            5689999999999998877664   11369999999999988888888889999999999999987633       4799


Q ss_pred             EEEEEeC-----CccchHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~-----~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+|+.-.     ..+..++.+....+.|||||+++=+
T Consensus       260 DIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~  296 (448)
T PF05185_consen  260 DIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPS  296 (448)
T ss_dssp             EEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred             eEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCc
Confidence            9998642     2445667788888999999998743

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.94  E-value=5.2e-09  Score=93.48  Aligned_cols=119  Identities=21%  Similarity=0.222  Sum_probs=98.4

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ..+.|..+..+-++++..++..|||--||||.+.+.....   +++++|+|++..|++-|+.|++..++.+-..+..+|+
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da  255 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDA  255 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccc
Confidence            4788999999999999999999999999999999887754   6899999999999999999999998776333444488


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEe
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ... + +.    +..+|.|..|++.            +-+.++++.+...|++||++++-
T Consensus       256 ~~l-p-l~----~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~  309 (347)
T COG1041         256 TNL-P-LR----DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA  309 (347)
T ss_pred             ccC-C-CC----CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence            643 3 31    3469999999861            22778899999999999999884

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.93  E-value=1.2e-08  Score=87.18  Aligned_cols=128  Identities=9%  Similarity=-0.003  Sum_probs=88.5

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHH------H-----hCC
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE------R-----AGV  169 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~------~-----~g~  169 (279)
                      ..+++...+.+..+.. .++.+||..|||.|.-..+|++.   +.+|+|+|+|+.+++.+.+...      .     .-.
T Consensus        26 ~~pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~  101 (226)
T PRK13256         26 ESPNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK  101 (226)
T ss_pred             CCCCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence            3455555455444322 24579999999999999999986   5789999999999988755210      0     001


Q ss_pred             CCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEe-----CCccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          170 SHKVKIKHGLAADSLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       170 ~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id-----~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      ...+++.++|+++..+..   ...++||+|+--     -+.+....|.+.+.++|+|||.+++-..-+.+.
T Consensus       102 ~~~i~~~~gD~f~l~~~~---~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~  169 (226)
T PRK13256        102 GDDIEIYVADIFNLPKIA---NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKK  169 (226)
T ss_pred             cCceEEEEccCcCCCccc---cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCC
Confidence            236899999998753200   003689998643     345667889999999999999888765544443

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=6.3e-09  Score=86.10  Aligned_cols=102  Identities=21%  Similarity=0.285  Sum_probs=80.3

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCC---------CCcEEEEEcChhhHHHH
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGV---------SHKVKIKHGLAADSLKA  186 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~---------~~~v~~~~gd~~~~l~~  186 (279)
                      ..++-+.||+|+|+|+.+.+++..+...+ ..+|||..++.++.+++++.+.--         ..++.++.||.....+.
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e  159 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE  159 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence            45778999999999999999997765444 459999999999999999886541         23578899998765443


Q ss_pred             HHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          187 LILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       187 ~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                            ..+||.|++.+....   ..+.+...|++||.|++
T Consensus       160 ------~a~YDaIhvGAaa~~---~pq~l~dqL~~gGrlli  191 (237)
T KOG1661|consen  160 ------QAPYDAIHVGAAASE---LPQELLDQLKPGGRLLI  191 (237)
T ss_pred             ------cCCcceEEEccCccc---cHHHHHHhhccCCeEEE
Confidence                  589999999876443   34466778899999887

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=4.1e-08  Score=79.59  Aligned_cols=105  Identities=14%  Similarity=0.214  Sum_probs=83.2

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      ++-++|||||+|..+.++++.+.+...+.++|++|++.+..++..+.++..  +..++.|..+.+.       .++.|++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~-------~~~VDvL  114 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLR-------NESVDVL  114 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhc-------cCCccEE
Confidence            678999999999999999999877789999999999999999998877653  7889888887665       5899999


Q ss_pred             EEeCCc------------------------cchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          200 FVDAEK------------------------RMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       200 ~id~~~------------------------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      +.+.+.                        +-...++..+-.+|.|.|++.+--+..+
T Consensus       115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N  172 (209)
T KOG3191|consen  115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN  172 (209)
T ss_pred             EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence            877541                        0123455555678899999988544433

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.91  E-value=5.1e-09  Score=93.11  Aligned_cols=103  Identities=20%  Similarity=0.304  Sum_probs=80.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ....+.|||+|||+|..+++.|++..  .+|+++|.+. +++.|++.+..+++.+.+++++|.+.+.  .++    .++.
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP----~eKV  128 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDI--ELP----VEKV  128 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEE--ecC----ccce
Confidence            56789999999999999999999853  6999999985 4599999999999999999999999875  221    3799


Q ss_pred             EEEEEeCC--ccchHHHHHHHH----ccCCCCcEEEEe
Q 023645          197 DFAFVDAE--KRMYQEYFELLL----QLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~--~~~~~~~l~~~~----~~Lk~gG~lv~d  228 (279)
                      |+|+....  .--+...++.++    +.|+|||+++=+
T Consensus       129 DiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~  166 (346)
T KOG1499|consen  129 DIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD  166 (346)
T ss_pred             eEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence            99986532  112233444443    889999998654

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.90  E-value=3.1e-09  Score=88.51  Aligned_cols=95  Identities=15%  Similarity=0.178  Sum_probs=71.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      +.-|||||||+|.++..+...   +...+|+|+|+.|++.|.+.-    ++  -.++.+|.-+-+|.-     .+.||-+
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e----~e--gdlil~DMG~Glpfr-----pGtFDg~  116 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE----LE--GDLILCDMGEGLPFR-----PGTFDGV  116 (270)
T ss_pred             CcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh----hh--cCeeeeecCCCCCCC-----CCccceE
Confidence            678999999999999887753   467899999999999998621    11  257777776655543     6899998


Q ss_pred             EEe--------CC------ccchHHHHHHHHccCCCCcEEEEe
Q 023645          200 FVD--------AE------KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       200 ~id--------~~------~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++-        +.      +.....||..++..|++|+..|+.
T Consensus       117 ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  117 ISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             EEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence            742        22      223456788899999999988774

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.90  E-value=1.4e-08  Score=91.32  Aligned_cols=110  Identities=20%  Similarity=0.180  Sum_probs=94.4

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|+|.-+|.|++++.+|..-.  ..|+++|++|.+++..++|++.+++.++++.++||+.+..+..      +.+
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~------~~a  257 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL------GVA  257 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc------ccC
Confidence            34588999999999999999998743  3499999999999999999999999999999999999887743      789


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      |-|++..+.. ..+++..+...+++||++.++...-...
T Consensus       258 DrIim~~p~~-a~~fl~~A~~~~k~~g~iHyy~~~~e~~  295 (341)
T COG2520         258 DRIIMGLPKS-AHEFLPLALELLKDGGIIHYYEFVPEDD  295 (341)
T ss_pred             CEEEeCCCCc-chhhHHHHHHHhhcCcEEEEEeccchhh
Confidence            9999987653 3478888999999999999987765443

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.90  E-value=3e-08  Score=87.48  Aligned_cols=104  Identities=11%  Similarity=0.023  Sum_probs=75.8

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ..+++.....+...+...++.+|||||||+|..+..+++..   .+|+++|+++++++.+++++..    .+++++++|+
T Consensus        24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~   96 (272)
T PRK00274         24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDA   96 (272)
T ss_pred             cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChh
Confidence            34555555555555556677899999999999999999874   3999999999999999887642    4699999999


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHc
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ  217 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~  217 (279)
                      .+....      +-.+|.|+.+.+..-....+..+..
T Consensus        97 ~~~~~~------~~~~~~vv~NlPY~iss~ii~~~l~  127 (272)
T PRK00274         97 LKVDLS------ELQPLKVVANLPYNITTPLLFHLLE  127 (272)
T ss_pred             hcCCHH------HcCcceEEEeCCccchHHHHHHHHh
Confidence            864211      1115888888775554555555543

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.89  E-value=2.2e-08  Score=87.63  Aligned_cols=92  Identities=14%  Similarity=0.084  Sum_probs=72.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      +.+++.....+...+...++.+|||||||+|..|..+++.   ..+|+++|+++.+++.+++++..   .++++++++|+
T Consensus        11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~   84 (258)
T PRK14896         11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDA   84 (258)
T ss_pred             ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecc
Confidence            4456666666666666667789999999999999999987   35899999999999999988754   34699999999


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCcc
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEKR  206 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~~  206 (279)
                      .+..        ...||.|+.+.+..
T Consensus        85 ~~~~--------~~~~d~Vv~NlPy~  102 (258)
T PRK14896         85 LKVD--------LPEFNKVVSNLPYQ  102 (258)
T ss_pred             ccCC--------chhceEEEEcCCcc
Confidence            7642        23589999887644

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.87  E-value=2.8e-08  Score=82.39  Aligned_cols=96  Identities=20%  Similarity=0.377  Sum_probs=81.1

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i  201 (279)
                      +++|||+|.|.-++.++-..| +.+++.+|.....+...+......|+++ ++++++.+.+  +..     ..+||+|++
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~--~~~-----~~~fd~v~a  121 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE--PEY-----RESFDVVTA  121 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH--TTT-----TT-EEEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc--ccc-----CCCccEEEe
Confidence            899999999999999999887 7899999999999999999999999975 9999999976  111     689999998


Q ss_pred             eCCccchHHHHHHHHccCCCCcEEEE
Q 023645          202 DAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       202 d~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      -+.. ....+++.+.++|++||.+++
T Consensus       122 RAv~-~l~~l~~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen  122 RAVA-PLDKLLELARPLLKPGGRLLA  146 (184)
T ss_dssp             ESSS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred             ehhc-CHHHHHHHHHHhcCCCCEEEE
Confidence            7754 355788899999999999987

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.85  E-value=1.9e-08  Score=83.93  Aligned_cols=114  Identities=17%  Similarity=0.158  Sum_probs=84.7

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH--hCCCCCcEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI--LNGEASSYDFA  199 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~--~~~~~~~fDlI  199 (279)
                      +|||||||||--+.++++.+| ..+...-|.++......+..+...++.+-..-+.-|+.+......  .....+.||.|
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i  106 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI  106 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence            599999999999999999998 688889999999988888888888776533444445543211110  00014689999


Q ss_pred             EEeC-----CccchHHHHHHHHccCCCCcEEEEeCCCC-CCcc
Q 023645          200 FVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLW-HGKV  236 (279)
Q Consensus       200 ~id~-----~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~-~g~~  236 (279)
                      |+-.     +......+|+.+.++|++||.|++-..+. +|..
T Consensus       107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~  149 (204)
T PF06080_consen  107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKF  149 (204)
T ss_pred             eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEe
Confidence            9754     35567788999999999999999988764 4544

The function of this family is unknown.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.84  E-value=5e-08  Score=85.17  Aligned_cols=103  Identities=15%  Similarity=0.129  Sum_probs=74.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ..+++.....+...+...++.+|||||||+|..+..+++..+   +++++|+++.+++.+++++..   ..+++++++|+
T Consensus        11 fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~   84 (253)
T TIGR00755        11 FLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDA   84 (253)
T ss_pred             cCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECch
Confidence            345555555555555556778999999999999999998754   699999999999999887743   34699999999


Q ss_pred             hhHHHHHHhCCCCCcEE---EEEEeCCccchHHHHHHHHc
Q 023645          181 ADSLKALILNGEASSYD---FAFVDAEKRMYQEYFELLLQ  217 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fD---lI~id~~~~~~~~~l~~~~~  217 (279)
                      .+...        ..||   +|+.+.+.......+..+..
T Consensus        85 ~~~~~--------~~~d~~~~vvsNlPy~i~~~il~~ll~  116 (253)
T TIGR00755        85 LKVDL--------PDFPKQLKVVSNLPYNISSPLIFKLLE  116 (253)
T ss_pred             hcCCh--------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence            76422        1344   77777665555555555554

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.83  E-value=5.1e-09  Score=88.45  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=79.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      .+|||||||.|.....+.+..+. +-.|+++|.+|.+++..+++.....  .++.....|...  +.+....+.+++|+|
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~--~~~~~~~~~~svD~i  148 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTS--PSLKEPPEEGSVDII  148 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccc--hhccCCCCcCccceE
Confidence            37999999999999999987762 2689999999999999988766433  345444445432  222222246788876


Q ss_pred             EE-----eCCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          200 FV-----DAEKRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       200 ~i-----d~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      .+     ...++.....++.+.++|||||.|++.|...
T Consensus       149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~  186 (264)
T KOG2361|consen  149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR  186 (264)
T ss_pred             EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence            43     2346667789999999999999999988753

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.82  E-value=1.3e-08  Score=85.15  Aligned_cols=89  Identities=17%  Similarity=0.191  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||||||+|..+..+++..  ...++++|+++++++.+++        .+++++++|+.+.++..    .+++||+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~----~~~sfD~   78 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAF----PDKSFDY   78 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhccccc----CCCCcCE
Confidence            46699999999999998887653  4678999999999888754        13678888886533212    1578999


Q ss_pred             EEEeCC---ccchHHHHHHHHccCCC
Q 023645          199 AFVDAE---KRMYQEYFELLLQLIRV  221 (279)
Q Consensus       199 I~id~~---~~~~~~~l~~~~~~Lk~  221 (279)
                      |++...   ..+....++++.+.+++
T Consensus        79 Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        79 VILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             EEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            998764   34456677777776554

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.81  E-value=2.1e-08  Score=82.61  Aligned_cols=132  Identities=17%  Similarity=0.190  Sum_probs=88.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||.|....++.+.  .+.+.+|+|++++.+..+.+        ..+.++++|+.+.+....    +++||
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~----d~sFD   77 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFP----DQSFD   77 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCC----CCCcc
Confidence            45679999999999998888775  26899999999987655433        237899999988776653    78999


Q ss_pred             EEEEeCCc---cchHHHHHHHHccCCCCcEEEEeCCC---------CCCcccCc-----cc---CChhhHHHHHHHHHhh
Q 023645          198 FAFVDAEK---RMYQEYFELLLQLIRVGGIIVIDNVL---------WHGKVADQ-----MV---NDAKTISIRNFNKNLM  257 (279)
Q Consensus       198 lI~id~~~---~~~~~~l~~~~~~Lk~gG~lv~dd~~---------~~g~~~~~-----~~---~~~~~~~~~~~~~~l~  257 (279)
                      .|++....   ......++++.+.-| .+++-+-|.-         +.|+|.-.     .|   ...+-..+++|.+.-.
T Consensus        78 ~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~  156 (193)
T PF07021_consen   78 YVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR  156 (193)
T ss_pred             EEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence            99987653   334556666655433 3566666652         46655321     11   1223446888876654


Q ss_pred             hCCCeEEE
Q 023645          258 EDERVSIS  265 (279)
Q Consensus       258 ~~~~~~~~  265 (279)
                      + .++.+.
T Consensus       157 ~-~~i~I~  163 (193)
T PF07021_consen  157 E-LGIRIE  163 (193)
T ss_pred             H-CCCEEE
Confidence            4 455543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.80  E-value=1.1e-08  Score=85.96  Aligned_cols=137  Identities=18%  Similarity=0.175  Sum_probs=87.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ...+.||+|+|.|..|..++...  -.+|..+|..+.+++.|++.+... .....++.+....++.|.      .++||+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~------~~~YDl  125 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE------EGKYDL  125 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----------TT-EEE
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC------CCcEeE
Confidence            35699999999999998765433  359999999999999999876541 123357777777777664      479999


Q ss_pred             EEEeCC-----ccchHHHHHHHHccCCCCcEEEEe-CCCCCCc-ccCcccCChhhHHHHHHHHHhhhCCCeEEEE
Q 023645          199 AFVDAE-----KRMYQEYFELLLQLIRVGGIIVID-NVLWHGK-VADQMVNDAKTISIRNFNKNLMEDERVSISM  266 (279)
Q Consensus       199 I~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~d-d~~~~g~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  266 (279)
                      |++.-.     -.+...+|+.+...|+|+|+|++. |+.-.|. +.|+.... -|.. .+..+.|....++.++.
T Consensus       126 IW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsS-vTRs-~~~~~~lF~~AGl~~v~  198 (218)
T PF05891_consen  126 IWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSS-VTRS-DEHFRELFKQAGLRLVK  198 (218)
T ss_dssp             EEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTE-EEEE-HHHHHHHHHHCT-EEEE
T ss_pred             EEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCe-eecC-HHHHHHHHHHcCCEEEE
Confidence            998643     456788999999999999999995 4555554 55544321 1111 22334444556666553

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.77  E-value=2.1e-07  Score=81.16  Aligned_cols=99  Identities=10%  Similarity=0.087  Sum_probs=77.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--CC-CCcEEEEEcChhhHHHHHHhCCCC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~-~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...|++||=||.|-|..+..+++. +  .+|+.||++++.++.+++.+...  ++ +.|++++..     ....    ..
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-----~~~~----~~  137 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-----LLDL----DI  137 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-----hhhc----cC
Confidence            456899999999999999999986 3  39999999999999999966542  22 457888751     1111    13


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ++||+|++|...  ..++++.+.+.|+|||+++...
T Consensus       138 ~~fDVIIvDs~~--~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        138 KKYDLIICLQEP--DIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CcCCEEEEcCCC--ChHHHHHHHHhcCCCcEEEECC
Confidence            689999999653  3578899999999999999964

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.76  E-value=8.8e-08  Score=91.50  Aligned_cols=102  Identities=15%  Similarity=0.146  Sum_probs=82.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      ...+||||||.|.++..+|...| +..++|+|+....+..+.+.....++.+ +.++++|+......+    .++++|.|
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~----~~~sv~~i  421 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDL----PNNSLDGI  421 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhc----CcccccEE
Confidence            45899999999999999999988 7899999999999988888888888865 888888875433333    15779999


Q ss_pred             EEeC---Ccc--------chHHHHHHHHccCCCCcEEEE
Q 023645          200 FVDA---EKR--------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       200 ~id~---~~~--------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ++..   ++.        -...+++.+.+.|+|||.|.+
T Consensus       422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~  460 (506)
T PRK01544        422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF  460 (506)
T ss_pred             EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence            8864   311        157799999999999998877

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.75  E-value=5.7e-08  Score=86.14  Aligned_cols=82  Identities=22%  Similarity=0.184  Sum_probs=68.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++..+||.+||.|..|..+++.+++.++|+|+|.++++++.|++.+..   .++++++++++.+....+.. + ..++|
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~-~-~~~vD   92 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE-G-LGKVD   92 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc-C-CCccC
Confidence            4567999999999999999999987679999999999999999988764   45799999999887555421 1 23799


Q ss_pred             EEEEeCC
Q 023645          198 FAFVDAE  204 (279)
Q Consensus       198 lI~id~~  204 (279)
                      .|++|.+
T Consensus        93 gIl~DLG   99 (296)
T PRK00050         93 GILLDLG   99 (296)
T ss_pred             EEEECCC
Confidence            9998865

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.75  E-value=2.4e-08  Score=83.16  Aligned_cols=84  Identities=19%  Similarity=0.216  Sum_probs=71.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ......|+|..||.|+.++.++...   ..|++||++|..+..|+.|++-.|..++|+|++||+++....+..  +...+
T Consensus        92 ~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~--~K~~~  166 (263)
T KOG2730|consen   92 CMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKA--DKIKY  166 (263)
T ss_pred             hcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhh--hhhee
Confidence            3367789999999999999998875   499999999999999999999999999999999999998766532  24568


Q ss_pred             EEEEEeCCc
Q 023645          197 DFAFVDAEK  205 (279)
Q Consensus       197 DlI~id~~~  205 (279)
                      |+||..++.
T Consensus       167 ~~vf~sppw  175 (263)
T KOG2730|consen  167 DCVFLSPPW  175 (263)
T ss_pred             eeeecCCCC
Confidence            899987653

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.73  E-value=8.7e-08  Score=87.57  Aligned_cols=115  Identities=24%  Similarity=0.256  Sum_probs=73.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHh-hcC--CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcE
Q 023645           97 RGSQMQVSPDQAQLLAMLVQ-ILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  173 (279)
Q Consensus        97 ~~~~~~~~~~~~~~l~~l~~-~~~--~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v  173 (279)
                      ++++.++++.+.+.+...+. ..+  +..|||+.||.|.+++.+|...   .+|+|||.++++++.|+++++.+++.+ +
T Consensus       171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n-~  246 (352)
T PF05958_consen  171 PGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDN-V  246 (352)
T ss_dssp             TTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--S-E
T ss_pred             CCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCc-c
Confidence            56778888887766555443 222  2389999999999999999875   599999999999999999999999975 9


Q ss_pred             EEEEcChhhHHHHHHhC----------CCCCcEEEEEEeCCccchHH-HHHHH
Q 023645          174 KIKHGLAADSLKALILN----------GEASSYDFAFVDAEKRMYQE-YFELL  215 (279)
Q Consensus       174 ~~~~gd~~~~l~~~~~~----------~~~~~fDlI~id~~~~~~~~-~l~~~  215 (279)
                      +|+.+++.+....+...          .....+|+|++|++...... .++.+
T Consensus       247 ~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~  299 (352)
T PF05958_consen  247 EFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI  299 (352)
T ss_dssp             EEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred             eEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence            99999886643322100          01236899999998665443 44444

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.73  E-value=1.5e-08  Score=85.69  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=71.2

Q ss_pred             HHHHHHhhcCCC-EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645          110 LLAMLVQILGAQ-RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       110 ~l~~l~~~~~~~-~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~  188 (279)
                      ++..++...+.. .++|+|||+|..+..++....   +|+++|+++.|++.|++.....-..-..++...+..+.+    
T Consensus        23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~----   95 (261)
T KOG3010|consen   23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL----   95 (261)
T ss_pred             HHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCcccccccccccc----
Confidence            344444444333 799999999977777887754   899999999999988875432111111122211221111    


Q ss_pred             hCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCc-EEEE
Q 023645          189 LNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGG-IIVI  227 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG-~lv~  227 (279)
                        |.+++.|+|.+.-.  .=+...+++.+.++||+.| ++.+
T Consensus        96 --g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   96 --GGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             --CCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence              12689999987543  2346789999999999877 6666

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.72  E-value=8.7e-08  Score=86.58  Aligned_cols=107  Identities=10%  Similarity=0.131  Sum_probs=72.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC---------CCCcEEEEEcChhhH-HHHHH
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---------VSHKVKIKHGLAADS-LKALI  188 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---------~~~~v~~~~gd~~~~-l~~~~  188 (279)
                      ++.+|||+|||-|.-..-+..+-  -.+++|+|++++.++.|++.++...         ..-...++.+|.... +....
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            56799999999888666666542  3699999999999999999984321         112367788887642 22211


Q ss_pred             hCCCCCcEEEEEEeCC-------ccchHHHHHHHHccCCCCcEEEEe
Q 023645          189 LNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~-------~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .. ...+||+|-+-..       .+....+++.+...|+|||+++..
T Consensus       140 ~~-~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  140 PP-RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             SS-TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cc-cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            11 1359999977643       334566899999999999999973

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.68  E-value=4.3e-07  Score=79.15  Aligned_cols=118  Identities=18%  Similarity=0.265  Sum_probs=95.4

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN  190 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~  190 (279)
                      +.....+-+||||.||.|...+-.....|. ...|...|.++..++..++.+++.|+.+.++|.++|+++.  +..+   
T Consensus       130 L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l---  206 (311)
T PF12147_consen  130 LREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAAL---  206 (311)
T ss_pred             HHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhcc---
Confidence            333456789999999999999888888774 3589999999999999999999999998779999999874  3333   


Q ss_pred             CCCCcEEEEEEeCCcc------chHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 023645          191 GEASSYDFAFVDAEKR------MYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~  236 (279)
                        ....+++++.+-.+      .....+.-+...+.|||++|..+--|+-..
T Consensus       207 --~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl  256 (311)
T PF12147_consen  207 --DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL  256 (311)
T ss_pred             --CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch
Confidence              45679998876532      244467778899999999999987777654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.67  E-value=1.3e-07  Score=79.82  Aligned_cols=98  Identities=23%  Similarity=0.408  Sum_probs=82.7

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc-EEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS-YDF  198 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~-fDl  198 (279)
                      +++++|||+|.|.-++.++-..| +.+||-+|.....+...++...+.++++ ++++++.+.+.-+       ..+ ||+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~-------~~~~~D~  138 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQ-------EKKQYDV  138 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhccc-------ccccCcE
Confidence            68999999999999999997777 6779999999999999999999999975 9999999976543       223 999


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |.+-+.. ......+.+.+++++||.+++
T Consensus       139 vtsRAva-~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         139 VTSRAVA-SLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             EEeehcc-chHHHHHHHHHhcccCCcchh
Confidence            9886643 345678888999999988765

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.64  E-value=1.2e-07  Score=83.59  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=78.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ..++.|||+|||+|..+.+.+++.  ..+|+++|.+ +|.+.|++.++.+.+.++++++.|...+.-  +     .++.|
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--L-----PEk~D  245 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--L-----PEKVD  245 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc--C-----chhcc
Confidence            357899999999999999988874  3699999997 789999999999999999999999987651  2     47899


Q ss_pred             EEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +|+..+-     .+...+-.-.+.+.|+|.|.+.-
T Consensus       246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             EEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence            9987643     12222223344699999998763

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=8.2e-07  Score=76.99  Aligned_cols=103  Identities=16%  Similarity=0.113  Sum_probs=75.9

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .++....+-+-..+...++.+|||||+|.|..|..+++..   .+|+++|+++.+++..++.+.   ..++++++++|+.
T Consensus        13 L~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaL   86 (259)
T COG0030          13 LIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDAL   86 (259)
T ss_pred             ccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchh
Confidence            3444444444455555667899999999999999999974   589999999999999988775   3457999999998


Q ss_pred             hH-HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHH
Q 023645          182 DS-LKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (279)
Q Consensus       182 ~~-l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~  216 (279)
                      .. ++.+      .+++.|+.+-+..-....+..+.
T Consensus        87 k~d~~~l------~~~~~vVaNlPY~Isspii~kll  116 (259)
T COG0030          87 KFDFPSL------AQPYKVVANLPYNISSPILFKLL  116 (259)
T ss_pred             cCcchhh------cCCCEEEEcCCCcccHHHHHHHH
Confidence            74 2221      16789998877555445544444

>PRK04148 hypothetical protein; Provisional

Probab=98.61  E-value=4.6e-07  Score=70.80  Aligned_cols=100  Identities=12%  Similarity=0.076  Sum_probs=69.4

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCH-HHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645          110 LLAMLVQILGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~-~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~  188 (279)
                      ++.......++++|||||||+|. .+..|++.   +..|+++|++++.++.++++        .+.++.+|.++.-..+ 
T Consensus         7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~-   74 (134)
T PRK04148          7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI-   74 (134)
T ss_pred             HHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH-
Confidence            33333333445789999999997 66666653   57999999999988877664        2688999998754444 


Q ss_pred             hCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                          -..+|+|+.--+.......+-.+.+.+  |.-+++
T Consensus        75 ----y~~a~liysirpp~el~~~~~~la~~~--~~~~~i  107 (134)
T PRK04148         75 ----YKNAKLIYSIRPPRDLQPFILELAKKI--NVPLII  107 (134)
T ss_pred             ----HhcCCEEEEeCCCHHHHHHHHHHHHHc--CCCEEE
Confidence                468999998776666555555555533  334444

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.57  E-value=3.3e-07  Score=72.06  Aligned_cols=111  Identities=18%  Similarity=0.296  Sum_probs=78.1

Q ss_pred             EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC------------ccchHHHHH
Q 023645          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------------KRMYQEYFE  213 (279)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~------------~~~~~~~l~  213 (279)
                      +|+++|+.+++++.+++.+++.++.+++++++.+-......+.    .+++|+++.+-+            .+.....++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP----EGPVDAAIFNLGYLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence            6899999999999999999999998899999887765443331    248999987632            233567899


Q ss_pred             HHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEe
Q 023645          214 LLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMV  267 (279)
Q Consensus       214 ~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  267 (279)
                      .+..+|+|||+|++  ++++|+..    +..+..++.+|.+.| +...|.+...
T Consensus        77 ~al~lL~~gG~i~i--v~Y~GH~g----G~eE~~av~~~~~~L-~~~~~~V~~~  123 (140)
T PF06962_consen   77 AALELLKPGGIITI--VVYPGHPG----GKEESEAVEEFLASL-DQKEFNVLKY  123 (140)
T ss_dssp             HHHHHEEEEEEEEE--EE--STCH----HHHHHHHHHHHHHTS--TTTEEEEEE
T ss_pred             HHHHhhccCCEEEE--EEeCCCCC----CHHHHHHHHHHHHhC-CcceEEEEEE
Confidence            99999999999999  67888732    234566788888777 4456766543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.57  E-value=3.4e-07  Score=80.24  Aligned_cols=103  Identities=18%  Similarity=0.216  Sum_probs=68.5

Q ss_pred             CCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHH-HhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          120 AQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-RAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       120 ~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      |++|+=||||. -.+++.+++....+..|+++|+++++.+.+++.++ ..|+..+++|+.+|..+....      -..||
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d------l~~~D  194 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD------LKEYD  194 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------S
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc------cccCC
Confidence            46999999995 44556666554336789999999999999999888 668888999999999765433      26899


Q ss_pred             EEEEeCCcc----chHHHHHHHHccCCCCcEEEEe
Q 023645          198 FAFVDAEKR----MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       198 lI~id~~~~----~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +||+.+-..    .-.+.++.+.+.++||+.+++.
T Consensus       195 vV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  195 VVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             EEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             EEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            999976543    6678999999999999999986

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=4.2e-07  Score=71.11  Aligned_cols=77  Identities=17%  Similarity=0.290  Sum_probs=63.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ..++.++|+|||+|..+...+  ++..-.|+|+|++|++++.+.+|.++..++  +.+.++|..+....      .+.||
T Consensus        47 iEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~------~g~fD  116 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK------GGIFD  116 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc------CCeEe
Confidence            468899999999999884433  444568999999999999999999987775  68999998765443      48899


Q ss_pred             EEEEeCC
Q 023645          198 FAFVDAE  204 (279)
Q Consensus       198 lI~id~~  204 (279)
                      .++++.+
T Consensus       117 taviNpp  123 (185)
T KOG3420|consen  117 TAVINPP  123 (185)
T ss_pred             eEEecCC
Confidence            9999976

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=98.53  E-value=2.7e-07  Score=79.79  Aligned_cols=149  Identities=21%  Similarity=0.304  Sum_probs=89.3

Q ss_pred             CCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHC---C-CCCEEEEEeCCh--------------------
Q 023645          103 VSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVL---P-ESGCLVACERDA--------------------  154 (279)
Q Consensus       103 ~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~t~~la~~~---~-~~~~v~~iD~s~--------------------  154 (279)
                      +.......|..+++    ..-+..|+|+||..|.+++.++..+   . .+-+++++|.=+                    
T Consensus        54 ~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~  133 (248)
T PF05711_consen   54 IGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHE  133 (248)
T ss_dssp             SHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCG
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhh
Confidence            44444444444444    2346799999999999887765432   2 234688888411                    


Q ss_pred             ------hHHHHHHHHHHHhCC-CCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-ccchHHHHHHHHccCCCCcEEE
Q 023645          155 ------RSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-KRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       155 ------~~~~~a~~~~~~~g~-~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                            ...+..++++...|+ .++++++.|.+.+.++...    ..++-++.+|.+ .+.....|+.+++.|.|||+|+
T Consensus       134 ~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p----~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi  209 (248)
T PF05711_consen  134 YNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAP----IERIALLHLDCDLYESTKDALEFLYPRLSPGGIII  209 (248)
T ss_dssp             CCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-T----T--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             cccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCC----CccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEE
Confidence                  123445555655554 4579999999998877542    467888889987 5667788999999999999999


Q ss_pred             EeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeec
Q 023645          227 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPI  269 (279)
Q Consensus       227 ~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~  269 (279)
                      +||..++|          ...|+.+|.+.    .++...+.++
T Consensus       210 ~DDY~~~g----------cr~AvdeF~~~----~gi~~~l~~i  238 (248)
T PF05711_consen  210 FDDYGHPG----------CRKAVDEFRAE----HGITDPLHPI  238 (248)
T ss_dssp             ESSTTTHH----------HHHHHHHHHHH----TT--S--EE-
T ss_pred             EeCCCChH----------HHHHHHHHHHH----cCCCCccEEe
Confidence            99987743          24577777543    3444445565

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.53  E-value=2.2e-07  Score=75.51  Aligned_cols=78  Identities=12%  Similarity=0.077  Sum_probs=60.8

Q ss_pred             EEEeCChhHHHHHHHHHHHh--CCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCC
Q 023645          148 VACERDARSLEVAKKYYERA--GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVG  222 (279)
Q Consensus       148 ~~iD~s~~~~~~a~~~~~~~--g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~g  222 (279)
                      +|+|+|++|++.|++..+..  +..++++++++|+.+. +.     .+++||+|++...   ..+....++++.++||||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~-----~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG   74 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF-----DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG   74 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC-----CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence            48999999999998776532  2234699999999754 22     1578999988653   456788999999999999


Q ss_pred             cEEEEeCCC
Q 023645          223 GIIVIDNVL  231 (279)
Q Consensus       223 G~lv~dd~~  231 (279)
                      |.+++.+..
T Consensus        75 G~l~i~d~~   83 (160)
T PLN02232         75 SRVSILDFN   83 (160)
T ss_pred             eEEEEEECC
Confidence            999987764

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.50  E-value=8.4e-07  Score=76.40  Aligned_cols=79  Identities=20%  Similarity=0.190  Sum_probs=66.5

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      +...++..|||||.|||..|..+.++   +.+|+++|++|.++....+.++....+++.++++||+....        ..
T Consensus        54 a~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d--------~P  122 (315)
T KOG0820|consen   54 ADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD--------LP  122 (315)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC--------Cc
Confidence            33456779999999999999999987   56999999999999999999887666789999999997541        35


Q ss_pred             cEEEEEEeCC
Q 023645          195 SYDFAFVDAE  204 (279)
Q Consensus       195 ~fDlI~id~~  204 (279)
                      .||.++.+-+
T Consensus       123 ~fd~cVsNlP  132 (315)
T KOG0820|consen  123 RFDGCVSNLP  132 (315)
T ss_pred             ccceeeccCC
Confidence            7899988655

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.45  E-value=9.3e-07  Score=77.83  Aligned_cols=107  Identities=12%  Similarity=0.120  Sum_probs=77.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-----cEEEEEcChhh-HHHHHHhCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGLAAD-SLKALILNG  191 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-----~v~~~~gd~~~-~l~~~~~~~  191 (279)
                      .+...++++|||-|.-.+-+-++-  -+.++|+|+.+..++.|++.++...-..     .+.|+.+|... .+..+.+. 
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~-  192 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF-  192 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC-
Confidence            456789999999999888777653  3689999999999999999887542222     37888888754 34443321 


Q ss_pred             CCCcEEEEEEeCC-------ccchHHHHHHHHccCCCCcEEEE
Q 023645          192 EASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       192 ~~~~fDlI~id~~-------~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .+.+||+|-+.-.       .+...-++..+...|+|||++|-
T Consensus       193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg  235 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG  235 (389)
T ss_pred             CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence            1334999954321       33345678889999999999996

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=1.1e-06  Score=81.85  Aligned_cols=126  Identities=19%  Similarity=0.210  Sum_probs=92.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc
Q 023645           97 RGSQMQVSPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  172 (279)
Q Consensus        97 ~~~~~~~~~~~~~~l~~l~~~----~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~  172 (279)
                      ++.+.+++...++.++..+..    ...+.++|+.||||.+++.+++..   .+|+|||++++.++-|+++...+|.++ 
T Consensus       357 p~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisN-  432 (534)
T KOG2187|consen  357 PGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISN-  432 (534)
T ss_pred             CchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccc-
Confidence            456778888888888877653    456789999999999999999875   599999999999999999999999986 


Q ss_pred             EEEEEcChhhHHHHHHhCCCCCcEE-EEEEeCCccchHHHHHHHHccCC-CCcEEEE
Q 023645          173 VKIKHGLAADSLKALILNGEASSYD-FAFVDAEKRMYQEYFELLLQLIR-VGGIIVI  227 (279)
Q Consensus       173 v~~~~gd~~~~l~~~~~~~~~~~fD-lI~id~~~~~~~~~l~~~~~~Lk-~gG~lv~  227 (279)
                      .+|++|-+++..+.+.... .+.-+ ++++|.+.......+....+..+ +--.+.+
T Consensus       433 a~Fi~gqaE~~~~sl~~~~-~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyv  488 (534)
T KOG2187|consen  433 ATFIVGQAEDLFPSLLTPC-CDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYV  488 (534)
T ss_pred             eeeeecchhhccchhcccC-CCCCceEEEECCCcccccHHHHHHHHhccCccceEEE
Confidence            9999998888777764322 12334 67788876554443333333333 4433333

>PRK10742 putative methyltransferase; Provisional

Probab=98.44  E-value=1.8e-06  Score=74.26  Aligned_cols=88  Identities=16%  Similarity=0.248  Sum_probs=72.4

Q ss_pred             HHHHHHHhhcCCC--EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh------C--CCCcEEEEEc
Q 023645          109 QLLAMLVQILGAQ--RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA------G--VSHKVKIKHG  178 (279)
Q Consensus       109 ~~l~~l~~~~~~~--~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------g--~~~~v~~~~g  178 (279)
                      +.+...+...++.  +|||+-+|+|..++.++..   +++|+++|.++......+++++.+      +  +..+++++++
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            3455555555655  8999999999999999976   678999999999999999999875      2  2257999999


Q ss_pred             ChhhHHHHHHhCCCCCcEEEEEEeCC
Q 023645          179 LAADSLKALILNGEASSYDFAFVDAE  204 (279)
Q Consensus       179 d~~~~l~~~~~~~~~~~fDlI~id~~  204 (279)
                      |+.+++...     ...||+||+|+.
T Consensus       153 da~~~L~~~-----~~~fDVVYlDPM  173 (250)
T PRK10742        153 SSLTALTDI-----TPRPQVVYLDPM  173 (250)
T ss_pred             cHHHHHhhC-----CCCCcEEEECCC
Confidence            999998764     457999999986

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.43  E-value=2.5e-06  Score=76.57  Aligned_cols=125  Identities=16%  Similarity=0.190  Sum_probs=84.8

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC------CCCCEEEEEeCChhHHHHHHHHHHHhCCCCc
Q 023645           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL------PESGCLVACERDARSLEVAKKYYERAGVSHK  172 (279)
Q Consensus        99 ~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~------~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~  172 (279)
                      +...++.....++..++...++.+|+|-+||+|.+...+.+.+      ....+++|+|+++.++..|+-++.-.+....
T Consensus        26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~  105 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS  105 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred             ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence            3456778888899999887888899999999999998887743      1257999999999999999988776665332


Q ss_pred             -EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccc------------------------hHHHHHHHHccCCCCcEEEE
Q 023645          173 -VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM------------------------YQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       173 -v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~------------------------~~~~l~~~~~~Lk~gG~lv~  227 (279)
                       ..+..+|........    ...+||+|+.+++...                        ...++..+...|++||.+++
T Consensus       106 ~~~i~~~d~l~~~~~~----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~  181 (311)
T PF02384_consen  106 NINIIQGDSLENDKFI----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI  181 (311)
T ss_dssp             GCEEEES-TTTSHSCT----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cccccccccccccccc----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence             468888876542210    1368999998865111                        12477888999999997544

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=4.4e-06  Score=69.83  Aligned_cols=101  Identities=20%  Similarity=0.191  Sum_probs=74.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh--HHHHHHhCCCCCc
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASS  195 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~~~~~~~~~~  195 (279)
                      .++..|+|+|+..|.|+..+++.++.+++|+++|+.|-.            .-..|.++++|+.+  .+..+...-...+
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~  111 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGAP  111 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCCC
Confidence            456899999999999999999998877889999998832            11238999999865  3333332222456


Q ss_pred             EEEEEEeCCc--------cc------hHHHHHHHHccCCCCcEEEEeCC
Q 023645          196 YDFAFVDAEK--------RM------YQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       196 fDlI~id~~~--------~~------~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +|+|++|..+        ++      ....++.+...|+|||.+++...
T Consensus       112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f  160 (205)
T COG0293         112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF  160 (205)
T ss_pred             cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence            7999998653        11      22345666789999999999754

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.40  E-value=5.3e-06  Score=74.27  Aligned_cols=106  Identities=20%  Similarity=0.308  Sum_probs=83.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHH--HHHhC---C-CCcEEEEEcChhhHHHHHHhCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERAG---V-SHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~g---~-~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      ...++||-+|.|-|.-...+.+ .|.-.+|+-+|++|++++.++.+  +...+   + +.|++++..|+..++..-    
T Consensus       288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a----  362 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA----  362 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence            3567999999999988888876 46467999999999999999843  33222   2 468999999999998875    


Q ss_pred             CCCcEEEEEEeCCcc--------chHHHHHHHHccCCCCcEEEEeC
Q 023645          192 EASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       192 ~~~~fDlI~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                       .+.||+|++|-...        ...++...+.+.|+++|.+|+..
T Consensus       363 -~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         363 -ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             -cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence             57999999985421        23567888889999999999863

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.39  E-value=3.7e-06  Score=72.44  Aligned_cols=149  Identities=13%  Similarity=0.106  Sum_probs=95.4

Q ss_pred             CCCCCCCHHHHHHHHHHH-----hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc
Q 023645           98 GSQMQVSPDQAQLLAMLV-----QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  172 (279)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~-----~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~  172 (279)
                      +..+..+.++.+-+....     ......++||||+|.|..|..++..+.   +|++.|.|+.|..    .+++.|.   
T Consensus        68 G~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~----rL~~kg~---  137 (265)
T PF05219_consen   68 GSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRW----RLSKKGF---  137 (265)
T ss_pred             CcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHH----HHHhCCC---
Confidence            334466666654444433     122456899999999999999998875   7999999998853    3444443   


Q ss_pred             EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC-------CC-cccCcc-
Q 023645          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW-------HG-KVADQM-  240 (279)
Q Consensus       173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~-------~g-~~~~~~-  240 (279)
                       +++.  ..+. ...     +.+||+|.+-..   ...+...++.+.+.|+|+|.+++.=++-       .+ .-..|. 
T Consensus       138 -~vl~--~~~w-~~~-----~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e  208 (265)
T PF05219_consen  138 -TVLD--IDDW-QQT-----DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE  208 (265)
T ss_pred             -eEEe--hhhh-hcc-----CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh
Confidence             3332  2222 111     468999987543   4557788999999999999999876652       11 111111 


Q ss_pred             ----cCChhhHHHHHHHHHhhhCCCeEEEE
Q 023645          241 ----VNDAKTISIRNFNKNLMEDERVSISM  266 (279)
Q Consensus       241 ----~~~~~~~~~~~~~~~l~~~~~~~~~~  266 (279)
                          .+......+..|. .+...-+|++..
T Consensus       209 ~l~~~g~~~E~~v~~l~-~v~~p~GF~v~~  237 (265)
T PF05219_consen  209 LLPVKGATFEEQVSSLV-NVFEPAGFEVER  237 (265)
T ss_pred             hcCCCCCcHHHHHHHHH-HHHHhcCCEEEE
Confidence                1112233567777 566788887653

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.39  E-value=2.7e-06  Score=71.72  Aligned_cols=98  Identities=15%  Similarity=0.238  Sum_probs=66.9

Q ss_pred             EEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEe
Q 023645          123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD  202 (279)
Q Consensus       123 VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id  202 (279)
                      |.||||-.|+..+++.+... ..+++++|+++..++.|+++++..|+.++++++.+|.++.++.      .+..|.|++.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~------~e~~d~ivIA   73 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP------GEDVDTIVIA   73 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G------GG---EEEEE
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC------CCCCCEEEEe
Confidence            68999999999999998743 4589999999999999999999999999999999999887653      2337888775


Q ss_pred             CC-ccchHHHHHHHHccCCCCcEEEE
Q 023645          203 AE-KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       203 ~~-~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +. -....+.++.....++....+|+
T Consensus        74 GMGG~lI~~ILe~~~~~~~~~~~lIL   99 (205)
T PF04816_consen   74 GMGGELIIEILEAGPEKLSSAKRLIL   99 (205)
T ss_dssp             EE-HHHHHHHHHHTGGGGTT--EEEE
T ss_pred             cCCHHHHHHHHHhhHHHhccCCeEEE
Confidence            42 22333444444444444444444

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.38  E-value=7.3e-07  Score=73.71  Aligned_cols=98  Identities=19%  Similarity=0.266  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh--HHHHHHhCC--CCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNG--EAS  194 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~~~~~~--~~~  194 (279)
                      ++.+|||+||++|.++..+++...+.++|+++|+.+.           ... ..+..+++|..+  ....+....  ..+
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence            3479999999999999999998744689999999986           112 236666666643  112221110  126


Q ss_pred             cEEEEEEeCCc--------------cchHHHHHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~~--------------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +||+|++|...              ......+..+...|+|||.+|+.
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K  138 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK  138 (181)
T ss_dssp             SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence            89999999831              11223455556889999988875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.38  E-value=1.7e-06  Score=76.56  Aligned_cols=105  Identities=18%  Similarity=0.207  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCccCHHHHH----HHHHCC---CCCEEEEEeCChhHHHHHHHHH------------------HH-------
Q 023645          119 GAQRCIEVGVYTGYSSLA----IALVLP---ESGCLVACERDARSLEVAKKYY------------------ER-------  166 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~----la~~~~---~~~~v~~iD~s~~~~~~a~~~~------------------~~-------  166 (279)
                      ++-+|+-.||.+|--...    +.+..+   .+.+|+|+|+|+.+++.|++..                  ..       
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            346999999999974333    333332   1358999999999999988741                  11       


Q ss_pred             -----hCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 023645          167 -----AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       167 -----~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                           ..+.+.|+|...|..+.....     .+.||+|||-..     .+.....++.+.+.|+|||+|++-
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~-----~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAV-----PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCcc-----CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                 012245777777776521111     478999998543     455678899999999999999884

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.36  E-value=3.8e-06  Score=83.51  Aligned_cols=99  Identities=14%  Similarity=0.156  Sum_probs=75.7

Q ss_pred             CCCHHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHC---CC----------------------------------
Q 023645          102 QVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVL---PE----------------------------------  143 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~t~~la~~~---~~----------------------------------  143 (279)
                      .+.+..+..+..++.. .++..++|-+||+|.+.+..+...   ++                                  
T Consensus       172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~  251 (702)
T PRK11783        172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG  251 (702)
T ss_pred             CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence            3455555555566654 456799999999999998876531   11                                  


Q ss_pred             ----CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC
Q 023645          144 ----SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  204 (279)
Q Consensus       144 ----~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~  204 (279)
                          ..+++|+|+++++++.|++|+..+|+.+.+++.++|+.+.....    ..++||+|+++++
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPP  312 (702)
T PRK11783        252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPP  312 (702)
T ss_pred             ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCC
Confidence                23799999999999999999999999988999999997653211    1257999999977

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.36  E-value=5.4e-06  Score=79.86  Aligned_cols=84  Identities=13%  Similarity=0.034  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC-------CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      ...+|||.|||+|.+...++..++.       ..+++|+|+++..+..++.++...+. ..+.+..+|.......... .
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~-~  108 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIE-S  108 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccc-c
Confidence            3458999999999999998876631       24789999999999999999887652 2356676665532111100 0


Q ss_pred             CCCcEEEEEEeCC
Q 023645          192 EASSYDFAFVDAE  204 (279)
Q Consensus       192 ~~~~fDlI~id~~  204 (279)
                      ..++||+|+.+++
T Consensus       109 ~~~~fD~IIgNPP  121 (524)
T TIGR02987       109 YLDLFDIVITNPP  121 (524)
T ss_pred             ccCcccEEEeCCC
Confidence            1368999998876

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.35  E-value=2.3e-06  Score=73.30  Aligned_cols=95  Identities=14%  Similarity=0.128  Sum_probs=58.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE-EEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~-~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .++++|||+|||+|.++..+++. + ..+|+++|++++++..   .+..   ..++. +...|+......... .+-..+
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~---~l~~---~~~v~~~~~~ni~~~~~~~~~-~d~~~~  144 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE---KLRQ---DERVKVLERTNIRYVTPADIF-PDFATF  144 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH---HHhc---CCCeeEeecCCcccCCHhHcC-CCceee
Confidence            35679999999999999999986 2 3689999999987754   1111   12222 222233211111000 012467


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |++|+...     ..+..+.++|++ |.+++
T Consensus       145 DvsfiS~~-----~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       145 DVSFISLI-----SILPELDLLLNP-NDLTL  169 (228)
T ss_pred             eEEEeehH-----hHHHHHHHHhCc-CeEEE
Confidence            77776533     357788888999 66654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.35  E-value=4.1e-06  Score=70.68  Aligned_cols=113  Identities=20%  Similarity=0.196  Sum_probs=68.4

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHH-------HhCC-CCcEEEEEcChhhH--H
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-------RAGV-SHKVKIKHGLAADS--L  184 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-------~~g~-~~~v~~~~gd~~~~--l  184 (279)
                      +...+....+|||||.|...+..+...+ -.+.+|||+.+...+.|+...+       ..|. ..++++.++|+.+.  .
T Consensus        38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~  116 (205)
T PF08123_consen   38 LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV  116 (205)
T ss_dssp             TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred             hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence            3455667999999999999888876654 3469999999998887765433       2233 34688999998753  2


Q ss_pred             HHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          185 KALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       185 ~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ..+     -..-|+||++..  .+.....+......||+|..||--.-+.+
T Consensus       117 ~~~-----~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~~~  162 (205)
T PF08123_consen  117 KDI-----WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPFCP  162 (205)
T ss_dssp             HHH-----GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-SS-
T ss_pred             hhh-----hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCcCC
Confidence            222     145789999875  34455666777788999988886444433

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.35  E-value=8.3e-06  Score=71.39  Aligned_cols=104  Identities=15%  Similarity=0.223  Sum_probs=74.1

Q ss_pred             CCCEEEEEcCccCH----HHHHHHHHCCC----CCEEEEEeCChhHHHHHHHHHHH-----hCCC---------------
Q 023645          119 GAQRCIEVGVYTGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYER-----AGVS---------------  170 (279)
Q Consensus       119 ~~~~VLEiG~G~G~----~t~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~~-----~g~~---------------  170 (279)
                      .+-+|+-.||++|-    .++.+.+.++.    ..+|+|.|+|...++.|+...=.     .++.               
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            36799999999996    44445555542    46899999999999988752110     1111               


Q ss_pred             --------CcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 023645          171 --------HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       171 --------~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                              ..|+|...|..+..+ .     .+.||+|||-..     .+.....++..+..|+|||+|++-
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~-~-----~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP-F-----LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc-c-----cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                    346677776655332 2     578999998654     455677899999999999999984

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.22  E-value=2.8e-06  Score=71.23  Aligned_cols=105  Identities=18%  Similarity=0.230  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCccCHHHHHH----HHHC----CCCCEEEEEeCChhHHHHHHHH--------------HHHh-----C---
Q 023645          119 GAQRCIEVGVYTGYSSLAI----ALVL----PESGCLVACERDARSLEVAKKY--------------YERA-----G---  168 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~l----a~~~----~~~~~v~~iD~s~~~~~~a~~~--------------~~~~-----g---  168 (279)
                      ++-+|+-.||++|.-...+    .+..    +...+|+|.|+|+.+++.|++.              .++.     +   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            4559999999999743332    3311    1135899999999999998762              1110     0   


Q ss_pred             -----CCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          169 -----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       169 -----~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                           +.+.|+|...|..+..+.      .+.||+|||-..     .+.....++.+...|+|||+|++-.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPP------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCcc------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence                 114689999998872222      589999999765     4445678999999999999999843

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.21  E-value=1.5e-05  Score=72.55  Aligned_cols=121  Identities=18%  Similarity=0.204  Sum_probs=92.0

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC---C----------------------------CC-----
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP---E----------------------------SG-----  145 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~---~----------------------------~~-----  145 (279)
                      .+.+..+.-|..++.-.+...++|-=||+|.+.+..|...+   +                            .+     
T Consensus       174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~  253 (381)
T COG0116         174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE  253 (381)
T ss_pred             CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence            34555556666666666778999999999999988776542   1                            11     


Q ss_pred             --EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc-----------chHHHH
Q 023645          146 --CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------MYQEYF  212 (279)
Q Consensus       146 --~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~-----------~~~~~l  212 (279)
                        .++|+|+++.+++.|+.|.+.+|+.+.|+|.++|+...-+.      .+.+|+|+++++..           -|..+.
T Consensus       254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg  327 (381)
T COG0116         254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP------LEEYGVVISNPPYGERLGSEALVAKLYREFG  327 (381)
T ss_pred             cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------CCcCCEEEeCCCcchhcCChhhHHHHHHHHH
Confidence              37899999999999999999999999999999999754321      16899999998721           355566


Q ss_pred             HHHHccCCCCcEEEEe
Q 023645          213 ELLLQLIRVGGIIVID  228 (279)
Q Consensus       213 ~~~~~~Lk~gG~lv~d  228 (279)
                      +.+.+.++..+..|+.
T Consensus       328 ~~lk~~~~~ws~~v~t  343 (381)
T COG0116         328 RTLKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHHHhcCCceEEEE
Confidence            6666778887777763

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.19  E-value=7.1e-06  Score=74.73  Aligned_cols=111  Identities=18%  Similarity=0.268  Sum_probs=88.4

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||+.+..|.-|.++|..+...|.|++.|.+...+...+.++.+.|+.+ ..+...|..++.....    .++|
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~----~~~f  313 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEF----PGSF  313 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccccccccc----Cccc
Confidence            3467899999999999999999998878999999999999999999999999876 5666677765432221    3489


Q ss_pred             EEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          197 DFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       197 DlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      |-|++|++...                         ..+.|..+..++++||+||...+-.
T Consensus       314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI  374 (460)
T KOG1122|consen  314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI  374 (460)
T ss_pred             ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence            99999976211                         2456777789999999999876643

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.19  E-value=3.5e-06  Score=68.84  Aligned_cols=98  Identities=17%  Similarity=0.207  Sum_probs=77.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      ..+.|+|+|+|..+...+.+.   .+|++||.+|...+.|++|+.-.|.. +++++.||+.+.-        -+.-|+|+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~--------fe~ADvvi  101 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYD--------FENADVVI  101 (252)
T ss_pred             hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccccccc--------ccccceeH
Confidence            589999999999999888873   49999999999999999999777775 4999999998652        24678887


Q ss_pred             EeCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          201 VDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       201 id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |..-     .+.....+..+...||..+.++-..+
T Consensus       102 cEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v  136 (252)
T COG4076         102 CEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEV  136 (252)
T ss_pred             HHHhhHHhhcccccHHHHHHHHHhhcCCccccHHH
Confidence            6421     33445677788889999988875444

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.18  E-value=2.2e-05  Score=65.60  Aligned_cols=106  Identities=19%  Similarity=0.188  Sum_probs=82.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+||++|-|.|.....+-++-|  .+-+-||.+|+.++..+..--  .-.++|.+..|...+.++.+.    ++.||
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw--~ek~nViil~g~WeDvl~~L~----d~~FD  171 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGW--REKENVIILEGRWEDVLNTLP----DKHFD  171 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhccc--ccccceEEEecchHhhhcccc----ccCcc
Confidence            5788999999999998888777644  456778999998866655322  234678999999988887774    56799


Q ss_pred             EEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      -|+-|.-   .++...+.+.+.++|||+|++-+-|-+
T Consensus       172 GI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~  208 (271)
T KOG1709|consen  172 GIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL  208 (271)
T ss_pred             eeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence            9999975   445566788889999999999875544

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.17  E-value=2.9e-05  Score=68.14  Aligned_cols=120  Identities=14%  Similarity=0.132  Sum_probs=84.2

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ..+++...+-+...+...++..|||||+|.|.+|..+++..   .+++++|+++.+.+..++.+.   ...+++++.+|+
T Consensus        12 FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~   85 (262)
T PF00398_consen   12 FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDF   85 (262)
T ss_dssp             EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-T
T ss_pred             eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecch
Confidence            34566666666666676788899999999999999999885   699999999999988888665   345799999999


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCC---CcEEEEeC
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRV---GGIIVIDN  229 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~---gG~lv~dd  229 (279)
                      .++-.....   ......|+.+-+..-....+..+...-+.   ..++++..
T Consensus        86 l~~~~~~~~---~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~  134 (262)
T PF00398_consen   86 LKWDLYDLL---KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQK  134 (262)
T ss_dssp             TTSCGGGHC---SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred             hccccHHhh---cCCceEEEEEecccchHHHHHHHhhcccccccceEEEEeh
Confidence            874221000   23566777776665555666666653333   35555543

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.15  E-value=4e-05  Score=68.90  Aligned_cols=109  Identities=14%  Similarity=0.014  Sum_probs=76.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC---CCEEEEEeCChhHHHHHHHHHHHhCCCC-cEEEEEcChhhHHHHHHhCCCCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ++..++|+|||.|.-+..+++++.+   ..+++++|+|.++++.+.+.+....... .+.-++||+.+.+..+.......
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~  155 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS  155 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence            4458999999999999888887642   3579999999999999999887333322 24448999977654332110023


Q ss_pred             cEEEEEEeC------CccchHHHHHHHHc-cCCCCcEEEE
Q 023645          195 SYDFAFVDA------EKRMYQEYFELLLQ-LIRVGGIIVI  227 (279)
Q Consensus       195 ~fDlI~id~------~~~~~~~~l~~~~~-~Lk~gG~lv~  227 (279)
                      ...+++.-+      .......+++.+.+ .|+|||.+++
T Consensus       156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence            355665433      24456678889988 9999998887

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.13  E-value=2e-05  Score=62.58  Aligned_cols=64  Identities=20%  Similarity=0.287  Sum_probs=51.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC---CCCCEEEEEeCChhHHHHHHHHHHHhC--CCCcEEEEEcChh
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHGLAA  181 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~v~~~~gd~~  181 (279)
                      .+..+|+|+|||.|+.+..++..+   ..+.+|+++|.++...+.+.+..+..+  +..++++..++..
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   92 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIA   92 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchh
Confidence            567899999999999999999833   136799999999999999999888777  4455666666554

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.11  E-value=1.1e-05  Score=63.74  Aligned_cols=58  Identities=21%  Similarity=0.231  Sum_probs=50.5

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      +++|||||.|..+.++++..+ .++++++|++|.+.+.++++++.+++.+ ++++.....
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeee
Confidence            489999999999999998876 5699999999999999999999888764 888776654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.11  E-value=4.9e-05  Score=67.71  Aligned_cols=84  Identities=24%  Similarity=0.171  Sum_probs=68.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++..++|.-+|.|.-|..+++.++ .++|+|+|.++.+++.+++.++..  .++++++++++.+....+...+ ..++
T Consensus        18 ~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~-~~~v   93 (305)
T TIGR00006        18 IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELL-VTKI   93 (305)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcC-CCcc
Confidence            34567999999999999999999987 499999999999999999988753  4689999999987655443222 3579


Q ss_pred             EEEEEeCC
Q 023645          197 DFAFVDAE  204 (279)
Q Consensus       197 DlI~id~~  204 (279)
                      |.|+.|-+
T Consensus        94 DgIl~DLG  101 (305)
T TIGR00006        94 DGILVDLG  101 (305)
T ss_pred             cEEEEecc
Confidence            99998855

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=98.06  E-value=8.9e-05  Score=60.89  Aligned_cols=146  Identities=16%  Similarity=0.182  Sum_probs=96.2

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC---CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      +|...-.++.++-...|..|+|+|+-.|.+++++|...   +...+|.++|++-..+.-+...      ..+|.|+.|+.
T Consensus        54 ~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss  127 (237)
T COG3510          54 SPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSS  127 (237)
T ss_pred             CHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCC
Confidence            45555566777778899999999999999999988753   3336899999987654332221      34699999998


Q ss_pred             hhH--HHHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccC--cc-cCChhhHHHHHHH
Q 023645          181 ADS--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD--QM-VNDAKTISIRNFN  253 (279)
Q Consensus       181 ~~~--l~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~--~~-~~~~~~~~~~~~~  253 (279)
                      .+.  ..+.......-+-=+|+.|.+  .++....++...++|.-|-++++.|....+....  |. .......++.+|+
T Consensus       128 ~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~yl  207 (237)
T COG3510         128 TDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYL  207 (237)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHH
Confidence            652  111110000112223445544  5567777888889999999999999888776642  22 2344455676666


Q ss_pred             HH
Q 023645          254 KN  255 (279)
Q Consensus       254 ~~  255 (279)
                      +.
T Consensus       208 r~  209 (237)
T COG3510         208 RE  209 (237)
T ss_pred             Hh
Confidence            54

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.04  E-value=2.1e-05  Score=72.32  Aligned_cols=105  Identities=16%  Similarity=0.238  Sum_probs=80.9

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-cEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      +.+|||.=+|+|.=++..+..++...+|+.-|+|+++++..++|++.+++.+ ++++.+.|+...+...     ...||+
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~-----~~~fD~  124 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR-----QERFDV  124 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS-----TT-EEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc-----cccCCE
Confidence            4589999999999999999887645699999999999999999999999987 7999999998766322     589999


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |=+|+- .....|++.+.+.++.||+|.+...
T Consensus       125 IDlDPf-GSp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  125 IDLDPF-GSPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             EEE--S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             EEeCCC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence            988863 4456899999999999999999543

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.03  E-value=5.3e-05  Score=63.94  Aligned_cols=105  Identities=15%  Similarity=0.143  Sum_probs=72.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      +.++.+||=+|.++|...-.++.-.+++|.|+++|.++...+..-...++   ..++-.+.+|+........   --+..
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~~Y~~---lv~~V  144 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPEKYRM---LVEMV  144 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGGGGTT---TS--E
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccCCChHHhhc---ccccc
Confidence            45678999999999999999999988789999999999765444333332   3458888899864211100   03689


Q ss_pred             EEEEEeCCccchHH-HHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAEKRMYQE-YFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~~~~~~~-~l~~~~~~Lk~gG~lv~  227 (279)
                      |+||.|....+..+ +...+...||+||.+++
T Consensus       145 DvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i  176 (229)
T PF01269_consen  145 DVIFQDVAQPDQARIAALNARHFLKPGGHLII  176 (229)
T ss_dssp             EEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cEEEecCCChHHHHHHHHHHHhhccCCcEEEE
Confidence            99999987655444 55666689999998886

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.00  E-value=9.2e-05  Score=66.35  Aligned_cols=98  Identities=14%  Similarity=0.099  Sum_probs=76.5

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      -...+|+|.|.|..+..+...+|   +|-+++.+...+..++.++. .|    |+.+.||.+...|         +-|+|
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P---------~~daI  240 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP---------KGDAI  240 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC---------CcCeE
Confidence            36899999999999999998776   68999999988888777775 44    7888888876543         33588


Q ss_pred             EEe-----CCccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          200 FVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       200 ~id-----~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      |+-     ..-++...+|+.++..|+|||.|++-+.+.+.
T Consensus       241 ~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~  280 (342)
T KOG3178|consen  241 WMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE  280 (342)
T ss_pred             EEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence            763     23556788999999999999987776665443

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.99  E-value=9e-05  Score=64.79  Aligned_cols=142  Identities=20%  Similarity=0.301  Sum_probs=106.4

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--CC-CCcEEEEEcChhhHHHHHHhCCC
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~-~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ++..+++||-||-|-|.......+. +.-..++-+|++...++..++++...  |. ..+|.++.||...+++...    
T Consensus       118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~----  192 (337)
T KOG1562|consen  118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK----  192 (337)
T ss_pred             cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----
Confidence            3567899999999999887776655 33468999999999999999988753  33 3579999999998887663    


Q ss_pred             CCcEEEEEEeCCc-------cchHHHHHHHHccCCCCcEEEEeC-CCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEE
Q 023645          193 ASSYDFAFVDAEK-------RMYQEYFELLLQLIRVGGIIVIDN-VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSI  264 (279)
Q Consensus       193 ~~~fDlI~id~~~-------~~~~~~l~~~~~~Lk~gG~lv~dd-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  264 (279)
                      .++||+|+.|.+.       -....+++.+.+.||+||+++... ..|-        .......+++|-+.+...-.+-.
T Consensus       193 ~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl--------~~~~i~e~r~~~~~~f~~t~ya~  264 (337)
T KOG1562|consen  193 ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWL--------HLDYIKEGRSFCYVIFDLTAYAI  264 (337)
T ss_pred             cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehH--------HHHHHHHHHHhHHHhcCccceee
Confidence            5899999998651       124568888899999999998742 3331        11223346778888877777888


Q ss_pred             EEeecC
Q 023645          265 SMVPIG  270 (279)
Q Consensus       265 ~~lp~~  270 (279)
                      +..|..
T Consensus       265 ttvPTy  270 (337)
T KOG1562|consen  265 TTVPTY  270 (337)
T ss_pred             ecCCCC
Confidence            888863

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.96  E-value=2.4e-05  Score=65.38  Aligned_cols=120  Identities=14%  Similarity=0.149  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHH
Q 023645          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (279)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (279)
                      ...++..+....+...|-|+|||-+..+.    .++....|...|+...              ++  .++.+|.... |-
T Consensus        60 vd~iI~~l~~~~~~~viaD~GCGdA~la~----~~~~~~~V~SfDLva~--------------n~--~Vtacdia~v-PL  118 (219)
T PF05148_consen   60 VDVIIEWLKKRPKSLVIADFGCGDAKLAK----AVPNKHKVHSFDLVAP--------------NP--RVTACDIANV-PL  118 (219)
T ss_dssp             HHHHHHHHCTS-TTS-EEEES-TT-HHHH----H--S---EEEEESS-S--------------ST--TEEES-TTS--S-
T ss_pred             HHHHHHHHHhcCCCEEEEECCCchHHHHH----hcccCceEEEeeccCC--------------CC--CEEEecCccC-cC
Confidence            34556666666556799999999998764    3443457999999752              22  3566777543 22


Q ss_pred             HHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEE
Q 023645          187 LILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSI  264 (279)
Q Consensus       187 ~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  264 (279)
                           +++..|+++..-.  -.++..++.++.|.||+||.|.|..+..+=.            .+.+|.+.+. .=+|..
T Consensus       119 -----~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~------------~~~~F~~~~~-~~GF~~  180 (219)
T PF05148_consen  119 -----EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFE------------NVKQFIKALK-KLGFKL  180 (219)
T ss_dssp             ------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-------------HHHHHHHHH-CTTEEE
T ss_pred             -----CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCc------------CHHHHHHHHH-HCCCeE
Confidence                 1689999876544  5578899999999999999999987753211            3577877764 335554


Q ss_pred             E
Q 023645          265 S  265 (279)
Q Consensus       265 ~  265 (279)
                      .
T Consensus       181 ~  181 (219)
T PF05148_consen  181 K  181 (219)
T ss_dssp             E
T ss_pred             E
Confidence            3

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.92  E-value=0.00017  Score=60.67  Aligned_cols=101  Identities=16%  Similarity=0.216  Sum_probs=79.3

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      +.++.||||-.|+...++.+..+ ..++++.|+++..++.|.++++.+++.+++++..+|.+..+..      ++.+|.|
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~------~d~~d~i   89 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL------EDEIDVI   89 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc------cCCcCEE
Confidence            44599999999999999998766 6789999999999999999999999999999999999765432      4589999


Q ss_pred             EEeCC-ccchHHHHHHHHccCCCCcEEEE
Q 023645          200 FVDAE-KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       200 ~id~~-~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ++.+- -.-....+++-...|+.--.+|+
T Consensus        90 vIAGMGG~lI~~ILee~~~~l~~~~rlIL  118 (226)
T COG2384          90 VIAGMGGTLIREILEEGKEKLKGVERLIL  118 (226)
T ss_pred             EEeCCcHHHHHHHHHHhhhhhcCcceEEE
Confidence            88654 33344566666555554334554

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.91  E-value=3.3e-05  Score=63.95  Aligned_cols=105  Identities=16%  Similarity=0.211  Sum_probs=77.1

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC------CCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------SHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~------~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      .+.|||||.|...+.++..+| +.-+.|+|+-....+..++.+...+.      -.++.+...++..+++.+...|+-.+
T Consensus        63 efaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk  141 (249)
T KOG3115|consen   63 EFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK  141 (249)
T ss_pred             eEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence            689999999999999999998 67899999999999999988886651      23478888888888888776543222


Q ss_pred             EEEEEEeCC--------ccchHHHHHHHHccCCCCcEEEE
Q 023645          196 YDFAFVDAE--------KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       196 fDlI~id~~--------~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      -=+.|-|..        .-....++.+..=+|++||.++.
T Consensus       142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt  181 (249)
T KOG3115|consen  142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT  181 (249)
T ss_pred             ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence            112222322        11134567777788999998765

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.90  E-value=1.2e-05  Score=74.96  Aligned_cols=158  Identities=11%  Similarity=0.136  Sum_probs=81.2

Q ss_pred             cCCCCCCCCHHHHHHHHHHHhhc-------CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeC---ChhHHHHHHHHHH
Q 023645           96 MRGSQMQVSPDQAQLLAMLVQIL-------GAQRCIEVGVYTGYSSLAIALVLPESGCLVACER---DARSLEVAKKYYE  165 (279)
Q Consensus        96 ~~~~~~~~~~~~~~~l~~l~~~~-------~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~---s~~~~~~a~~~~~  165 (279)
                      +|+..-+.......++..+.+..       .-+.+||+|||+|.++.+|.+.   +..+.++-.   .+..++.|-    
T Consensus        87 FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfal----  159 (506)
T PF03141_consen   87 FPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFAL----  159 (506)
T ss_pred             eCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhh----
Confidence            34443333444455555544433       2247899999999999999875   223333322   222333332    


Q ss_pred             HhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeC----CccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCccc
Q 023645          166 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA----EKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV  241 (279)
Q Consensus       166 ~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~----~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~  241 (279)
                      +-|+..-+.+.   ...-+|..     +..||+|-+..    +...-.-+|-++-++|||||+++....-....  .+..
T Consensus       160 eRGvpa~~~~~---~s~rLPfp-----~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r--~~~~  229 (506)
T PF03141_consen  160 ERGVPAMIGVL---GSQRLPFP-----SNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQR--TDED  229 (506)
T ss_pred             hcCcchhhhhh---ccccccCC-----ccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccccc--chHH
Confidence            22332211111   11223322     68999997643    22222346777889999999999765433200  0000


Q ss_pred             CChhhHHHHHH-----HHHhhhCCCeEEEEeecC
Q 023645          242 NDAKTISIRNF-----NKNLMEDERVSISMVPIG  270 (279)
Q Consensus       242 ~~~~~~~~~~~-----~~~l~~~~~~~~~~lp~~  270 (279)
                      ....-.+|.++     ++.+....++-+..=|..
T Consensus       230 ~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~  263 (506)
T PF03141_consen  230 LEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTN  263 (506)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCC
Confidence            11122245555     445556666655555543

; GO: 0008168 methyltransferase activity

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.88  E-value=6.2e-05  Score=66.74  Aligned_cols=81  Identities=20%  Similarity=0.343  Sum_probs=49.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-CCCCcEEEEEcChhh-HHHHHHhCCCCCcEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAAD-SLKALILNGEASSYDF  198 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd~~~-~l~~~~~~~~~~~fDl  198 (279)
                      .++||||||...+=-.|+.... +.+++|.|+++..++.|+++++.+ ++.++|+++...-.. .+..+..  ..+.||+
T Consensus       104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~--~~e~~df  180 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ--PNERFDF  180 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT----S-EEE
T ss_pred             eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc--ccceeeE
Confidence            4799999987654333333332 589999999999999999999999 999999998764322 2222221  1468999


Q ss_pred             EEEeCC
Q 023645          199 AFVDAE  204 (279)
Q Consensus       199 I~id~~  204 (279)
                      .+|+++
T Consensus       181 tmCNPP  186 (299)
T PF05971_consen  181 TMCNPP  186 (299)
T ss_dssp             EEE---
T ss_pred             EecCCc
Confidence            999987

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.84  E-value=7.1e-05  Score=66.11  Aligned_cols=97  Identities=13%  Similarity=0.145  Sum_probs=61.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ..|++|||+|||.|..+..+...++.-.+++++|.|+.+.+.++..++.......... ..+..   ....   +..+.|
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~~~---~~~~---~~~~~D  104 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRVLY---RDFL---PFPPDD  104 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhhhh---cccc---cCCCCc
Confidence            4678999999999987777777777446899999999999999997764322111111 11111   0000   123449


Q ss_pred             EEEEeCC-----ccchHHHHHHHHccCCC
Q 023645          198 FAFVDAE-----KRMYQEYFELLLQLIRV  221 (279)
Q Consensus       198 lI~id~~-----~~~~~~~l~~~~~~Lk~  221 (279)
                      +|++...     ......+++.++..+.+
T Consensus       105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~~  133 (274)
T PF09243_consen  105 LVIASYVLNELPSAARAELVRSLWNKTAP  133 (274)
T ss_pred             EEEEehhhhcCCchHHHHHHHHHHHhccC
Confidence            9987643     23455667777776666

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.80  E-value=0.00025  Score=54.78  Aligned_cols=105  Identities=21%  Similarity=0.274  Sum_probs=68.9

Q ss_pred             EEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH-HHHHHhCCCC-CcEEEEE
Q 023645          123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNGEA-SSYDFAF  200 (279)
Q Consensus       123 VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~~~~~~~~-~~fDlI~  200 (279)
                      ++|+|||+|..+ .+....+....++++|.++.++..++......+.. .+.+..++.... ++..     . ..||++.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~d~~~  124 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFE-----DSASFDLVI  124 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCC-----CCCceeEEe
Confidence            999999999987 44443332248999999999988855444321111 157777776542 2211     2 3799993


Q ss_pred             EeCCcc--chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          201 VDAEKR--MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       201 id~~~~--~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      ......  .....+..+.+.++|+|.+++.......
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            333211  1467888999999999999987766544

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.71  E-value=0.00014  Score=60.08  Aligned_cols=98  Identities=15%  Similarity=0.213  Sum_probs=70.2

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      +...+++|||+|+|+|..++..++..  ...|++.|+.|......+-|.+.+|..  +.+...|...  .       +..
T Consensus        76 etVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~-------~~~  142 (218)
T COG3897          76 ETVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--S-------PPA  142 (218)
T ss_pred             cccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--C-------Ccc
Confidence            34568999999999999999888764  358999999999988888899888864  7888777653  1       678


Q ss_pred             EEEEEEeCC---ccchHHHHHHHHccCCCCcEEEE
Q 023645          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       196 fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ||+++....   +......+. +...|+..|.-|+
T Consensus       143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             eeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence            999986432   333334444 4444444444444

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.70  E-value=0.00066  Score=58.09  Aligned_cols=98  Identities=20%  Similarity=0.254  Sum_probs=62.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ..+++||-+|=.--. ++.++.... ..+|+.+|+++..++..++..++.|+.  ++.++.|..+.+|.-.    .++||
T Consensus        43 L~gk~il~lGDDDLt-SlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~----~~~fD  114 (243)
T PF01861_consen   43 LEGKRILFLGDDDLT-SLALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL----RGKFD  114 (243)
T ss_dssp             STT-EEEEES-TT-H-HHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT----SS-BS
T ss_pred             ccCCEEEEEcCCcHH-HHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH----hcCCC
Confidence            468899999965443 444443332 479999999999999999999999986  9999999988776432    58999


Q ss_pred             EEEEeCC--ccchHHHHHHHHccCCCCc
Q 023645          198 FAFVDAE--KRMYQEYFELLLQLIRVGG  223 (279)
Q Consensus       198 lI~id~~--~~~~~~~l~~~~~~Lk~gG  223 (279)
                      ++|.|++  .+...-++......||.-|
T Consensus       115 ~f~TDPPyT~~G~~LFlsRgi~~Lk~~g  142 (243)
T PF01861_consen  115 VFFTDPPYTPEGLKLFLSRGIEALKGEG  142 (243)
T ss_dssp             EEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence            9999987  5667788889988998776

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.69  E-value=0.00058  Score=56.02  Aligned_cols=104  Identities=16%  Similarity=0.194  Sum_probs=69.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhH--HHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADS--LKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~--l~~~~~~~~~~  194 (279)
                      .+..+|||+||..|.|+...-+...+.+.|.|||+-+-.           .. ..++++.+ |+.+.  ...+.+.-...
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~r  135 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PP-EGATIIQGNDVTDPETYRKIFEALPNR  135 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CC-CCcccccccccCCHHHHHHHHHhCCCC
Confidence            457799999999999999998888668999999985421           12 23566666 55432  22222222357


Q ss_pred             cEEEEEEeCCc-------cchH-------HHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          195 SYDFAFVDAEK-------RMYQ-------EYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       195 ~fDlI~id~~~-------~~~~-------~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      +.|+|+.|..+       .+..       ..+..+...++|+|.+++.  +|.|.
T Consensus       136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g~  188 (232)
T KOG4589|consen  136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDGS  188 (232)
T ss_pred             cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecCC
Confidence            89999998531       1112       2333445788999999996  67775

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=0.00018  Score=61.19  Aligned_cols=98  Identities=14%  Similarity=0.102  Sum_probs=72.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE-cChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~~~~~~~~~~f  196 (279)
                      .+++.+||||+-||.+|..+++.-  ..+|+++|..-..+..-   +   ..+.++.... .++....+...    .+..
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k---L---R~d~rV~~~E~tN~r~l~~~~~----~~~~  145 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK---L---RNDPRVIVLERTNVRYLTPEDF----TEKP  145 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh---H---hcCCcEEEEecCChhhCCHHHc----ccCC
Confidence            467899999999999999999863  35999999988665432   1   1234555443 34443322221    3578


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |++++|.........+..+..+++++|.++.
T Consensus       146 d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         146 DLIVIDVSFISLKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             CeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence            9999999988888899999999999987775

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.67  E-value=0.00065  Score=59.24  Aligned_cols=164  Identities=12%  Similarity=0.121  Sum_probs=86.4

Q ss_pred             CCChhHHHHHHhccCChHHHHHHHHHHHc-cCCCCCCCCHHHHHH----HHHHHhhcCCCEEEEEcCcc--CHHHHHHHH
Q 023645           67 SVTPPLYDYILRNVREPEILRQLREETAG-MRGSQMQVSPDQAQL----LAMLVQILGAQRCIEVGVYT--GYSSLAIAL  139 (279)
Q Consensus        67 ~~~~~l~~Y~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~----l~~l~~~~~~~~VLEiG~G~--G~~t~~la~  139 (279)
                      ....++++|+...-...+.=+++-+.... .|. ...+-...-.|    +..++....-...||||||-  -..+..+++
T Consensus        12 P~~ARvYDy~LGGkdnf~vDR~~a~~~~~~~P~-~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq   90 (267)
T PF04672_consen   12 PSPARVYDYLLGGKDNFAVDREAAERLLAAAPE-IREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQ   90 (267)
T ss_dssp             --HHHHHHHHCT-SS--HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHH
T ss_pred             CcHHHHHHHHhCCccCCHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHH
Confidence            34467888888754443333333322221 221 11111222223    33344444667999999993  346777888


Q ss_pred             HCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC------C-CCcEEEEEEe-----CCccc
Q 023645          140 VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------E-ASSYDFAFVD-----AEKRM  207 (279)
Q Consensus       140 ~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~------~-~~~fDlI~id-----~~~~~  207 (279)
                      ...++++|+-+|.+|-.+..++..+....- .+..++++|..+.-.-+ ...      + +.+.=++++.     .+.++
T Consensus        91 ~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL-~~p~~~~~lD~~rPVavll~~vLh~v~D~~d  168 (267)
T PF04672_consen   91 RVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAIL-AHPEVRGLLDFDRPVAVLLVAVLHFVPDDDD  168 (267)
T ss_dssp             HH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHH-CSHHHHCC--TTS--EEEECT-GGGS-CGCT
T ss_pred             hhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHh-cCHHHHhcCCCCCCeeeeeeeeeccCCCccC
Confidence            776689999999999999999998875432 24899999997632221 100      0 2233333332     12456


Q ss_pred             hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          208 YQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       208 ~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ....+..+...|.||.+|++......
T Consensus       169 p~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  169 PAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             HHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             HHHHHHHHHHhCCCCceEEEEecCCC
Confidence            77899999999999999999776543

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.63  E-value=0.00082  Score=59.23  Aligned_cols=85  Identities=26%  Similarity=0.262  Sum_probs=71.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..+....+|.--|.|+.+..+++.+++.++++++|.++.+++.|++.+...+  ++++++++++.+....+...+ .+++
T Consensus        21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~-i~~v   97 (314)
T COG0275          21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELG-IGKV   97 (314)
T ss_pred             cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcC-CCce
Confidence            3455799999999999999999999878899999999999999999988644  689999999877655543333 5789


Q ss_pred             EEEEEeCC
Q 023645          197 DFAFVDAE  204 (279)
Q Consensus       197 DlI~id~~  204 (279)
                      |-|+.|-+
T Consensus        98 DGiL~DLG  105 (314)
T COG0275          98 DGILLDLG  105 (314)
T ss_pred             eEEEEecc
Confidence            99998854

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.61  E-value=0.00014  Score=65.39  Aligned_cols=100  Identities=14%  Similarity=0.056  Sum_probs=68.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .+++++|||||++|.+|..+++.   +++|++||..+-.     ..+.   -..+|+...+|.....+.      .+.+|
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~---~~~~V~h~~~d~fr~~p~------~~~vD  272 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLM---DTGQVEHLRADGFKFRPP------RKNVD  272 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----Hhhh---CCCCEEEEeccCcccCCC------CCCCC
Confidence            46789999999999999999986   5699999966522     1122   235699999998766542      36899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCC-cEEEEeCCCCCCc
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNVLWHGK  235 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~~~~g~  235 (279)
                      ++++|... .+....+.+.++|..| ..-.+=|+-.+++
T Consensus       273 wvVcDmve-~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk  310 (357)
T PRK11760        273 WLVCDMVE-KPARVAELMAQWLVNGWCREAIFNLKLPMK  310 (357)
T ss_pred             EEEEeccc-CHHHHHHHHHHHHhcCcccEEEEEEEcCCC
Confidence            99999752 2335566667777776 2223334445443

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.59  E-value=0.00079  Score=60.82  Aligned_cols=102  Identities=16%  Similarity=0.218  Sum_probs=83.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      +.+|+|-=+|+|.=++.++...+ ..+++.-|++|++++.+++|++.+...+ ..++..|+...+...     ...||+|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~-----~~~fd~I  125 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHEL-----HRAFDVI  125 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhc-----CCCccEE
Confidence            78999999999999999998876 3389999999999999999999874433 555558887666543     4789988


Q ss_pred             EEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          200 FVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      =+|+ ......|++.+.+.++.||++.+..
T Consensus       126 DiDP-FGSPaPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         126 DIDP-FGSPAPFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             ecCC-CCCCchHHHHHHHHhhcCCEEEEEe
Confidence            7765 3445688999999999999999854

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.58  E-value=0.00057  Score=59.92  Aligned_cols=105  Identities=17%  Similarity=0.153  Sum_probs=71.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC------------------------------
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------------------------------  169 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~------------------------------  169 (279)
                      ..+||--|||.|..+..+|..   +..+.|.|.|--|+-..+-.+.....                              
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            468999999999999999986   57999999999886444333221100                              


Q ss_pred             ---------CCcEEEEEcChhhHHHHHHhCCCCCcEEEEE----EeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          170 ---------SHKVKIKHGLAADSLKALILNGEASSYDFAF----VDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       170 ---------~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~----id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                               ..++.+..||+.+....-   ...++||.|+    +|. .++..+|++.+.++|||||+-|=-..+
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~---~~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~~lLkpgG~WIN~GPL  204 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPD---ENKGSFDVVVTCFFIDT-AENIIEYIETIEHLLKPGGYWINFGPL  204 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCc---ccCCcccEEEEEEEeec-hHHHHHHHHHHHHHhccCCEEEecCCc
Confidence                     123555666665543210   0136899884    443 566789999999999999976644433

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.55  E-value=0.00042  Score=61.82  Aligned_cols=86  Identities=22%  Similarity=0.179  Sum_probs=62.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++..++|.-.|.|+.|..+++.+++ ++++|+|.++++++.|++.+..  ..+++.++++++.+....+.......++
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~--~~~r~~~~~~~F~~l~~~l~~~~~~~~~   94 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK--FDDRFIFIHGNFSNLDEYLKELNGINKV   94 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC--CCTTEEEEES-GGGHHHHHHHTTTTS-E
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh--ccceEEEEeccHHHHHHHHHHccCCCcc
Confidence            456679999999999999999999984 9999999999999999887764  3678999999997765555433125689


Q ss_pred             EEEEEeCCc
Q 023645          197 DFAFVDAEK  205 (279)
Q Consensus       197 DlI~id~~~  205 (279)
                      |.|++|-+.
T Consensus        95 dgiL~DLGv  103 (310)
T PF01795_consen   95 DGILFDLGV  103 (310)
T ss_dssp             EEEEEE-S-
T ss_pred             CEEEEcccc
Confidence            999999663

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.54  E-value=0.00014  Score=66.56  Aligned_cols=107  Identities=14%  Similarity=0.198  Sum_probs=84.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++..++++|||.|.....++..-  .+.+++++.++..+..+.......++.++..++.+|+.....      ++..|
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f------edn~f  179 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF------EDNTF  179 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC------Ccccc
Confidence            3455689999999999999998753  579999999999998888888888887777777666654322      36889


Q ss_pred             EEEEE-eCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          197 DFAFV-DAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       197 DlI~i-d~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      |.+.. +..  .......++++++.++|||+.+.-...
T Consensus       180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i  217 (364)
T KOG1269|consen  180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI  217 (364)
T ss_pred             CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence            99854 433  556778899999999999999985544

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.51  E-value=0.0028  Score=60.58  Aligned_cols=136  Identities=18%  Similarity=0.245  Sum_probs=99.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC---CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEE
Q 023645           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (279)
Q Consensus        99 ~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~  175 (279)
                      +..-++....+++..++...+..+|.|-.||+|.......+.+..   ...++|.|+++.....++-++--+|....+..
T Consensus       166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i  245 (489)
T COG0286         166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI  245 (489)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence            456678888888888888766679999999999988887777642   26799999999999999999988888644667


Q ss_pred             EEcChhhHHHHHHhCCCCCcEEEEEEeCCc----------------------------cchHHHHHHHHccCCCCc---E
Q 023645          176 KHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGG---I  224 (279)
Q Consensus       176 ~~gd~~~~l~~~~~~~~~~~fDlI~id~~~----------------------------~~~~~~l~~~~~~Lk~gG---~  224 (279)
                      .++|........ .+.+.+.||+|+.+++.                            .....+++.+...|+|||   +
T Consensus       246 ~~~dtl~~~~~~-~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai  324 (489)
T COG0286         246 RHGDTLSNPKHD-DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI  324 (489)
T ss_pred             cccccccCCccc-ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence            777765443221 01124779998865431                            112567888889999865   5


Q ss_pred             EEEeCCCCCCc
Q 023645          225 IVIDNVLWHGK  235 (279)
Q Consensus       225 lv~dd~~~~g~  235 (279)
                      ++.+++++.|.
T Consensus       325 vl~~gvlfr~~  335 (489)
T COG0286         325 VLPDGVLFRGG  335 (489)
T ss_pred             EecCCcCcCCC
Confidence            66677777765

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=0.00058  Score=54.71  Aligned_cols=107  Identities=17%  Similarity=0.209  Sum_probs=69.5

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC--cEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH--KVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~--~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..+++|||+|.| +|..++++|...+ ...|...|-+++.++..++....+-...  ++.+..-+...  ...  +.+..
T Consensus        28 ~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~--aqs--q~eq~  102 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG--AQS--QQEQH  102 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh--hHH--HHhhC
Confidence            345789999988 5667788887766 6789999999999998888766432111  12111111110  111  11246


Q ss_pred             cEEEEEEe-CC--ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          195 SYDFAFVD-AE--KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       195 ~fDlI~id-~~--~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +||+|++. ..  .+......+.+..+|+|.|.-++-.
T Consensus       103 tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fs  140 (201)
T KOG3201|consen  103 TFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFS  140 (201)
T ss_pred             cccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEec
Confidence            89999864 32  4556677888899999999855533

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.48  E-value=0.00034  Score=60.18  Aligned_cols=96  Identities=11%  Similarity=0.077  Sum_probs=69.0

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      ..++..+-.......|-|+|||-+.++.    ..  .-.|+++|+.+              ..  -+++.+|.... |- 
T Consensus       169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~~--~~kV~SfDL~a--------------~~--~~V~~cDm~~v-Pl-  224 (325)
T KOG3045|consen  169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----SE--RHKVHSFDLVA--------------VN--ERVIACDMRNV-PL-  224 (325)
T ss_pred             HHHHHHHHhCcCceEEEecccchhhhhh----cc--ccceeeeeeec--------------CC--CceeeccccCC-cC-
Confidence            4455666555566789999999987654    22  35799999865              22  35666777653 21 


Q ss_pred             HhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          188 ILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                          ++++.|+++..-.  -.+...++.++.+.|++||.+.|..|-
T Consensus       225 ----~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  225 ----EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK  266 (325)
T ss_pred             ----ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence                2789999876543  456788999999999999999998774

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.46  E-value=0.00086  Score=66.53  Aligned_cols=102  Identities=22%  Similarity=0.239  Sum_probs=71.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHC-------CC----CCEEEEEeCChhH--------------HHHHHHHHHH-----hCC-
Q 023645          121 QRCIEVGVYTGYSSLAIALVL-------PE----SGCLVACERDARS--------------LEVAKKYYER-----AGV-  169 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~-------~~----~~~v~~iD~s~~~--------------~~~a~~~~~~-----~g~-  169 (279)
                      -+|+|+|-|+|...+...+.+       ++    .-+++++|..|-.              .+.+++..+.     .|+ 
T Consensus        59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~  138 (662)
T PRK01747         59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH  138 (662)
T ss_pred             EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence            489999999999887776544       21    2489999986522              2222222221     122 


Q ss_pred             -----CC--cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC------ccchHHHHHHHHccCCCCcEEEE
Q 023645          170 -----SH--KVKIKHGLAADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       170 -----~~--~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                           .+  .+++..||+.+.++.+     ...||++|.|+-      .-...++|..+.++++|||.++-
T Consensus       139 ~~~~~~~~~~l~l~~gd~~~~~~~~-----~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t  204 (662)
T PRK01747        139 RLLFDDGRVTLDLWFGDANELLPQL-----DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT  204 (662)
T ss_pred             EEEecCCcEEEEEEecCHHHHHHhc-----cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence                 11  3567889999988876     467999999963      12356899999999999999985

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.45  E-value=0.0013  Score=54.72  Aligned_cols=102  Identities=17%  Similarity=0.196  Sum_probs=76.3

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEAS  194 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~  194 (279)
                      +.++.+||=+|..+|...-.++.-.+ .+.++++|.++......-...+   -.+++-.+.+|+..-  ...+     -+
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~---~R~Ni~PIL~DA~~P~~Y~~~-----Ve  144 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAE---KRPNIIPILEDARKPEKYRHL-----VE  144 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHH---hCCCceeeecccCCcHHhhhh-----cc
Confidence            45788999999999999999999887 8999999999987654444333   234578888888532  2222     36


Q ss_pred             cEEEEEEeCCccchHH-HHHHHHccCCCCcEEEE
Q 023645          195 SYDFAFVDAEKRMYQE-YFELLLQLIRVGGIIVI  227 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~-~l~~~~~~Lk~gG~lv~  227 (279)
                      ..|+|+.|....+..+ +...+...|++||.+++
T Consensus       145 ~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         145 KVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             cccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence            7999999988665544 45666889999995554

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.43  E-value=0.00024  Score=66.21  Aligned_cols=117  Identities=21%  Similarity=0.239  Sum_probs=90.1

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC-CCCcEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDF  198 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~-~~~~fDl  198 (279)
                      +..+|-+|-|.|....++...+| ..++++++++|++++.|++++....-. +..++..|..+.+....... ++..||+
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv  373 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV  373 (482)
T ss_pred             cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence            45788888888999998888887 689999999999999999998754332 56777788888877776542 4678999


Q ss_pred             EEEeCCccc------------hHHHHHHHHccCCCCcEEEEeCCCCCCcccC
Q 023645          199 AFVDAEKRM------------YQEYFELLLQLIRVGGIIVIDNVLWHGKVAD  238 (279)
Q Consensus       199 I~id~~~~~------------~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~  238 (279)
                      +++|.+-.+            ...++..+...|.|.|+++++-+..+....+
T Consensus       374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~  425 (482)
T KOG2352|consen  374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKD  425 (482)
T ss_pred             EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhH
Confidence            999854111            2345666778999999999988877766543

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.42  E-value=0.00067  Score=58.42  Aligned_cols=87  Identities=11%  Similarity=0.136  Sum_probs=61.5

Q ss_pred             HHHHHHHHHhhc-CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645          107 QAQLLAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (279)
Q Consensus       107 ~~~~l~~l~~~~-~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (279)
                      ...++..+.... .+.+|+|||||.--.++.+....+ +..++|+|++..+++.....+...+..  .++...|.....+
T Consensus        92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~  168 (251)
T PF07091_consen   92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP  168 (251)
T ss_dssp             HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT
T ss_pred             HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC
Confidence            444555555443 478999999999998887775433 679999999999999999999998875  5666667765443


Q ss_pred             HHHhCCCCCcEEEEEEeC
Q 023645          186 ALILNGEASSYDFAFVDA  203 (279)
Q Consensus       186 ~~~~~~~~~~fDlI~id~  203 (279)
                             ....|+.++--
T Consensus       169 -------~~~~DlaLllK  179 (251)
T PF07091_consen  169 -------KEPADLALLLK  179 (251)
T ss_dssp             -------TSEESEEEEET
T ss_pred             -------CCCcchhhHHH
Confidence                   57789988753

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.36  E-value=0.00012  Score=61.83  Aligned_cols=97  Identities=8%  Similarity=0.045  Sum_probs=71.7

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      -..++||||+.|.....+....  -.+++-+|.|-.|++.++..-. .++  .+....+|- ++++.-     +.++|+|
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p~i--~~~~~v~DE-E~Ldf~-----ens~DLi  141 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-PSI--ETSYFVGDE-EFLDFK-----ENSVDLI  141 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-Cce--EEEEEecch-hccccc-----ccchhhh
Confidence            3479999999999988776542  2589999999999988765321 222  245556664 344422     6899999


Q ss_pred             EEe---CCccchHHHHHHHHccCCCCcEEEE
Q 023645          200 FVD---AEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       200 ~id---~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +..   ++..+.+..+.++...|||+|.++.
T Consensus       142 isSlslHW~NdLPg~m~~ck~~lKPDg~Fia  172 (325)
T KOG2940|consen  142 ISSLSLHWTNDLPGSMIQCKLALKPDGLFIA  172 (325)
T ss_pred             hhhhhhhhhccCchHHHHHHHhcCCCccchh
Confidence            865   4566778889999999999999886

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.29  E-value=0.00025  Score=60.72  Aligned_cols=86  Identities=20%  Similarity=0.260  Sum_probs=53.6

Q ss_pred             HHHHHhhcCC--CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh---CC-----CCcEEEEEcCh
Q 023645          111 LAMLVQILGA--QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---GV-----SHKVKIKHGLA  180 (279)
Q Consensus       111 l~~l~~~~~~--~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---g~-----~~~v~~~~gd~  180 (279)
                      +...+...++  .+|||.-+|.|.-++.++..   +++|+++|.||-.....+.-++.+   ..     ..+++++++|+
T Consensus        65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~  141 (234)
T PF04445_consen   65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA  141 (234)
T ss_dssp             HHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred             HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence            3344444443  38999999999999999864   579999999998877766554432   11     14799999999


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCC
Q 023645          181 ADSLKALILNGEASSYDFAFVDAE  204 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~  204 (279)
                      .+++...     +.+||+|++|+-
T Consensus       142 ~~~L~~~-----~~s~DVVY~DPM  160 (234)
T PF04445_consen  142 LEYLRQP-----DNSFDVVYFDPM  160 (234)
T ss_dssp             CCHCCCH-----SS--SEEEE--S
T ss_pred             HHHHhhc-----CCCCCEEEECCC
Confidence            9887622     689999999975

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.22  E-value=0.00066  Score=56.03  Aligned_cols=113  Identities=9%  Similarity=0.050  Sum_probs=68.4

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHH------HHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSL------EVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~------~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      +....++.+|+|+-.|.|++|..++....+.+.|+++-..+...      ...+....+.... +++.+-.+.....+  
T Consensus        43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~~--  119 (238)
T COG4798          43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALGA--  119 (238)
T ss_pred             EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccCC--
Confidence            34556788999999999999999999998888999876654311      1111111122222 23333333222111  


Q ss_pred             HhCCCCCcEEEEEEeCC----------ccchHHHHHHHHccCCCCcEEEEeCCC-CCC
Q 023645          188 ILNGEASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVL-WHG  234 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~----------~~~~~~~l~~~~~~Lk~gG~lv~dd~~-~~g  234 (279)
                           .+..|+++....          ......+...+++.|||||++++.|-. .+|
T Consensus       120 -----pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG  172 (238)
T COG4798         120 -----PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPG  172 (238)
T ss_pred             -----CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCC
Confidence                 355666654211          223456778889999999998876643 344

>PHA01634 hypothetical protein

Probab=97.08  E-value=0.0019  Score=49.73  Aligned_cols=75  Identities=21%  Similarity=0.216  Sum_probs=55.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ...++|+|||.+.|.++++++..-  ...|+++|.++...+..+++.+....-++..-. +   ++.      ++-++||
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~---eW~------~~Y~~~D   94 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G---EWN------GEYEDVD   94 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeec-c---ccc------ccCCCcc
Confidence            457899999999999999998763  358999999999999999988765433222221 1   111      1247899


Q ss_pred             EEEEeCC
Q 023645          198 FAFVDAE  204 (279)
Q Consensus       198 lI~id~~  204 (279)
                      +..+|..
T Consensus        95 i~~iDCe  101 (156)
T PHA01634         95 IFVMDCE  101 (156)
T ss_pred             eEEEEcc
Confidence            9999875

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.07  E-value=0.00054  Score=63.91  Aligned_cols=115  Identities=23%  Similarity=0.226  Sum_probs=92.4

Q ss_pred             HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645          112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       112 ~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      ....+..++-+|||.=|++|.-++..+..++.-.+|++-|.++..++..+++.+.++..+.++..+.|+.-..-..  ..
T Consensus       102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~--~~  179 (525)
T KOG1253|consen  102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH--PM  179 (525)
T ss_pred             chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc--cc
Confidence            3444556777999999999999999999998556899999999999999999999999888999999986432221  00


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ....||+|=+|+- .....|++.+.+.++.||+|.+.-
T Consensus       180 ~~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  180 VAKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             cccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEEe
Confidence            1478999988753 334578999999999999999853

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.96  E-value=0.0017  Score=58.12  Aligned_cols=119  Identities=13%  Similarity=0.134  Sum_probs=88.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHH-------HHHHHHHHhCCCC-c
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE-------VAKKYYERAGVSH-K  172 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~-------~a~~~~~~~g~~~-~  172 (279)
                      -.+.++..-+++.++...+++-|.|--.|||+.....+.-   ++.|+|.|++-.++.       ..+.|+++.|..+ -
T Consensus       190 TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~f  266 (421)
T KOG2671|consen  190 TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQF  266 (421)
T ss_pred             cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchh
Confidence            3566777788888888899999999999999988877764   589999999987765       4577899888643 3


Q ss_pred             EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc------------------------------------chHHHHHHHH
Q 023645          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------------------------MYQEYFELLL  216 (279)
Q Consensus       173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~------------------------------------~~~~~l~~~~  216 (279)
                      +.+..+|...-.-.     ....||.|++|++..                                    .+...+....
T Consensus       267 ldvl~~D~sn~~~r-----sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss  341 (421)
T KOG2671|consen  267 LDVLTADFSNPPLR-----SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSS  341 (421)
T ss_pred             hheeeecccCcchh-----hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhH
Confidence            57777887542111     157899999997510                                    0123455567


Q ss_pred             ccCCCCcEEEE
Q 023645          217 QLIRVGGIIVI  227 (279)
Q Consensus       217 ~~Lk~gG~lv~  227 (279)
                      +.|..||.+++
T Consensus       342 ~~L~~ggrlv~  352 (421)
T KOG2671|consen  342 RRLVDGGRLVF  352 (421)
T ss_pred             hhhhcCceEEE
Confidence            99999999997

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.94  E-value=0.0012  Score=57.54  Aligned_cols=111  Identities=12%  Similarity=0.135  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC---------------------------C
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS---------------------------H  171 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~---------------------------~  171 (279)
                      ++.++||||||.-..-  +..+.+.--+|+..|..+...+..++.++..+--                           .
T Consensus        56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            4569999999874432  2222221248999999998888777766543210                           1


Q ss_pred             cE-EEEEcChhhHHHHHHhCCCCCcEEEEEEeC-------CccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          172 KV-KIKHGLAADSLKALILNGEASSYDFAFVDA-------EKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       172 ~v-~~~~gd~~~~l~~~~~~~~~~~fDlI~id~-------~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      .| .++.+|.....+-.....-..+||+|+.-.       ..+.|...++.+.++|||||.|++-.++
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l  201 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL  201 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence            13 356666654221100000023599998643       3667888899999999999999997765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.89  E-value=0.0073  Score=54.62  Aligned_cols=99  Identities=21%  Similarity=0.235  Sum_probs=69.5

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ....++++|+-+|+| .|..+..+|+++.  ++|+++|.+++..+.|++.-.       -.++...-.+..+..     .
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~-----~  227 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAV-----K  227 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHh-----H
Confidence            345678899888887 4557778888774  899999999999888877432       133332222334443     2


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +.||+|+.-..    ...++...+.|++||.+++-...
T Consensus       228 ~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         228 EIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             hhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence            45999987665    35577888999999999985554

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.81  E-value=0.0068  Score=54.90  Aligned_cols=118  Identities=16%  Similarity=0.213  Sum_probs=78.9

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCC---CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH-hC
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI-LN  190 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~-~~  190 (279)
                      +...++.+|||+.+..|.-|+.+.+.+-   ..+.|++=|.++..+...........-. .+.+...++........ ..
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~  229 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDG  229 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccC
Confidence            4566888999999999999999888763   2358999999999888877776544332 24444444432211100 11


Q ss_pred             C--CCCcEEEEEEeCCc--------------c------------chHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          191 G--EASSYDFAFVDAEK--------------R------------MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       191 ~--~~~~fDlI~id~~~--------------~------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      +  +...||-|++|.+.              .            -....+...+++||+||.+|...+-.+
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn  300 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN  300 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence            1  23689999998541              0            023456666799999999999876544

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.73  E-value=0.0032  Score=58.05  Aligned_cols=58  Identities=21%  Similarity=0.333  Sum_probs=51.5

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .|||||+|||..+++.+++..  -.||++|.-..|.+.|++...++|++++|+++.....
T Consensus        69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSt  126 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRST  126 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccc
Confidence            689999999999999888764  4699999999999999999999999999988765554

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.71  E-value=0.0051  Score=52.53  Aligned_cols=105  Identities=17%  Similarity=0.142  Sum_probs=73.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      +.++.+||=+|+++|.+.-..+.-..+.+-|+++|.++..-...-...   ....+|..+..|+...-....   .-+-.
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmA---kkRtNiiPIiEDArhP~KYRm---lVgmV  227 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMA---KKRTNIIPIIEDARHPAKYRM---LVGMV  227 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHh---hccCCceeeeccCCCchheee---eeeeE
Confidence            457889999999999999999998888899999999986543322222   223346667777754221100   02578


Q ss_pred             EEEEEeCCccchHHHH-HHHHccCCCCcEEEE
Q 023645          197 DFAFVDAEKRMYQEYF-ELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~~~~~~~~l-~~~~~~Lk~gG~lv~  227 (279)
                      |+||.|....+....+ -.+...||+||-+++
T Consensus       228 DvIFaDvaqpdq~RivaLNA~~FLk~gGhfvi  259 (317)
T KOG1596|consen  228 DVIFADVAQPDQARIVALNAQYFLKNGGHFVI  259 (317)
T ss_pred             EEEeccCCCchhhhhhhhhhhhhhccCCeEEE
Confidence            9999998766654433 345678999998876

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.67  E-value=0.015  Score=51.90  Aligned_cols=119  Identities=20%  Similarity=0.259  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHHH---------hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc
Q 023645          103 VSPDQAQLLAMLV---------QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  172 (279)
Q Consensus       103 ~~~~~~~~l~~l~---------~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~  172 (279)
                      ++-+.+.++..|.         ....+.+||-+|+| .|..+...|++++ ..+|+.+|+++..++.|++ +   |...-
T Consensus       144 vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~  218 (354)
T KOG0024|consen  144 VSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVT  218 (354)
T ss_pred             CchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEE
Confidence            4455555555443         34567899999999 4888888899987 6799999999999999998 4   33321


Q ss_pred             EEEEEcChhhHHHHHHhCC-CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          173 VKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       173 v~~~~gd~~~~l~~~~~~~-~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ...-+.+..+.+....++. +...+|+.|--...   ..-++.+...++.||.+++-.
T Consensus       219 ~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~---~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  219 DPSSHKSSPQELAELVEKALGKKQPDVTFDCSGA---EVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             eeccccccHHHHHHHHHhhccccCCCeEEEccCc---hHHHHHHHHHhccCCEEEEec
Confidence            1122222223333333332 23568998854433   345667788899999987743

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.63  E-value=0.002  Score=57.86  Aligned_cols=106  Identities=23%  Similarity=0.269  Sum_probs=65.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ..+++|||+|.|.|.....+-..+|.-..++-++.|+..-++.....+..... .......|+....-.+   +..+.|+
T Consensus       112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~-~td~r~s~vt~dRl~l---p~ad~yt  187 (484)
T COG5459         112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE-KTDWRASDVTEDRLSL---PAADLYT  187 (484)
T ss_pred             cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc-cCCCCCCccchhccCC---Cccceee
Confidence            46789999999999776666666774457888888886655544433322221 2223333333221111   1146788


Q ss_pred             EEEEeC------CccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDA------EKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~------~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ++++-.      .......+++.++.++.|||.||+
T Consensus       188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi  223 (484)
T COG5459         188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVI  223 (484)
T ss_pred             hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence            877532      222344589999999999999998

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.58  E-value=0.01  Score=50.36  Aligned_cols=97  Identities=19%  Similarity=0.226  Sum_probs=66.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCC----CC----EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh--HHHHHHh
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPE----SG----CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALIL  189 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~----~~----~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~~~~  189 (279)
                      -++++|+....|.|+..+++.+-.    .+    .|++||+.+-+           ... .|.-+++|...  .+..++.
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii~  109 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAIIE  109 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHHH
Confidence            468999999999999999987632    21    39999997632           232 36677788753  3344443


Q ss_pred             CCCCCcEEEEEEeCC-----ccchHH---------HHHHHHccCCCCcEEEEe
Q 023645          190 NGEASSYDFAFVDAE-----KRMYQE---------YFELLLQLIRVGGIIVID  228 (279)
Q Consensus       190 ~~~~~~fDlI~id~~-----~~~~~~---------~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..+.++-|+|++|+.     .++..+         .|......|+|||.+|..
T Consensus       110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen  110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence            334579999999975     233333         344445889999999874

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.47  E-value=0.031  Score=51.18  Aligned_cols=103  Identities=20%  Similarity=0.235  Sum_probs=69.8

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCCCCCcE
Q 023645          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASSY  196 (279)
Q Consensus       119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~~~~~f  196 (279)
                      .+.+|+-+|||. |..+..+++..+ ..+|+.+|.+++.++.|++....    +.+..... +........   .....+
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~---t~g~g~  239 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILEL---TGGRGA  239 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHH---hCCCCC
Confidence            344899999985 777777888776 57999999999999999885531    11111111 222222121   112379


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      |++|--..   ....++.+...++|||.+++-.+.-
T Consensus       240 D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         240 DVVIEAVG---SPPALDQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             CEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccC
Confidence            99997655   4457889999999999999866543

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.46  E-value=0.01  Score=55.99  Aligned_cols=118  Identities=13%  Similarity=0.096  Sum_probs=83.0

Q ss_pred             CHHHHHHHHHHHhhcC------CCEEEEEcCccCHHHHHHHHH---CCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE
Q 023645          104 SPDQAQLLAMLVQILG------AQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVK  174 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~------~~~VLEiG~G~G~~t~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~  174 (279)
                      ...+..++..|.+..+      ...|+-+|.|.|-..-...++   ..+..+++++|.+|.++...+. .+.....++|+
T Consensus       346 ~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vt  424 (649)
T KOG0822|consen  346 DQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVT  424 (649)
T ss_pred             HHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeE
Confidence            3444555555555421      346788999999877665443   3345789999999999876654 44446778999


Q ss_pred             EEEcChhhHHHHHHhCCCCCcEEEEEEe-----CCccchHHHHHHHHccCCCCcEEEEe
Q 023645          175 IKHGLAADSLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       175 ~~~gd~~~~l~~~~~~~~~~~fDlI~id-----~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++.+|..++.+.      ..+.|+++..     ++-+--++.+.-+.+.|||.|+.|=.
T Consensus       425 ii~~DMR~w~ap------~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  425 IISSDMRKWNAP------REQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             EEeccccccCCc------hhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence            999999876532      2678988642     33455678899999999999887643

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.027  Score=44.64  Aligned_cols=113  Identities=13%  Similarity=0.073  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH
Q 023645          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (279)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (279)
                      .++-+-+..++...+..+.+|+|+|-|...+..++..-  -.-+|+|++|-.+..++-..-++|+..+..|...|.... 
T Consensus        58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~-  134 (199)
T KOG4058|consen   58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV-  134 (199)
T ss_pred             HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc-
Confidence            34434444455555667999999999999998887531  367999999999999988888889988888887776543 


Q ss_pred             HHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       185 ~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                       +      -..|..+.+-+........-.++..-+..+..++.
T Consensus       135 -d------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva  170 (199)
T KOG4058|consen  135 -D------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA  170 (199)
T ss_pred             -c------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence             1      23444444444433344444455556777777665

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.099  Score=45.06  Aligned_cols=112  Identities=17%  Similarity=0.128  Sum_probs=79.5

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCC---CEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHh
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~  189 (279)
                      .++.+..+...+|+|+|+-.-+..+..++...   .+++.||++...++...+.+...-..-.+.-+++|....+..+..
T Consensus        72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~  151 (321)
T COG4301          72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPR  151 (321)
T ss_pred             HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccC
Confidence            34556778899999999999999998887532   589999999998876555554433333477788888776665531


Q ss_pred             CCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645          190 NGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       190 ~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                         .+.==++|+...     +.....++..+...|+||-++++
T Consensus       152 ---~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll  191 (321)
T COG4301         152 ---GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL  191 (321)
T ss_pred             ---CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence               122234454432     55567899999999999988776

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.19  E-value=0.016  Score=48.93  Aligned_cols=80  Identities=13%  Similarity=0.143  Sum_probs=54.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH-HHHHHhCCCCCcEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNGEASSYDFA  199 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~~~~~~~~~~fDlI  199 (279)
                      .++|||||-+......-..    --.|+.||+++..                -.+.++|+.+. +|.    .+.++||+|
T Consensus        53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rplp~----~~~e~FdvI  108 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERPLPK----NESEKFDVI  108 (219)
T ss_pred             ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCCCCC----CcccceeEE
Confidence            5999999986654433222    2369999998732                24556666653 221    125799999


Q ss_pred             EEeC------CccchHHHHHHHHccCCCCcE
Q 023645          200 FVDA------EKRMYQEYFELLLQLIRVGGI  224 (279)
Q Consensus       200 ~id~------~~~~~~~~l~~~~~~Lk~gG~  224 (279)
                      .+.-      .....-+.+..+.++|+|+|.
T Consensus       109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen  109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            7542      355566889999999999999

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.09  E-value=0.00097  Score=55.61  Aligned_cols=114  Identities=16%  Similarity=0.094  Sum_probs=72.3

Q ss_pred             CCCCCCHHHHHHHHHHH-h--hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEE
Q 023645           99 SQMQVSPDQAQLLAMLV-Q--ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (279)
Q Consensus        99 ~~~~~~~~~~~~l~~l~-~--~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~  175 (279)
                      +....++++-+-+..+- .  ...+.++||+|+|.|-.+..++..+.   +|++.|.|..|....++    .+.    .+
T Consensus        89 sMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~k----k~y----nV  157 (288)
T KOG3987|consen   89 SMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKK----KNY----NV  157 (288)
T ss_pred             ceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhh----cCC----ce
Confidence            33455666643333222 1  23467999999999999999987664   68999999888655443    222    11


Q ss_pred             EEcChhhHHHHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCC-CcEEEEeCCC
Q 023645          176 KHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRV-GGIIVIDNVL  231 (279)
Q Consensus       176 ~~gd~~~~l~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~-gG~lv~dd~~  231 (279)
                      +  ...+.+..      +-+||+|.+-.-   .-+.-..++.++..|+| +|.+|+.=++
T Consensus       158 l--~~~ew~~t------~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL  209 (288)
T KOG3987|consen  158 L--TEIEWLQT------DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL  209 (288)
T ss_pred             e--eehhhhhc------CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence            1  11233221      457999876432   33455788899999999 7887775444

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.07  E-value=0.11  Score=43.91  Aligned_cols=107  Identities=16%  Similarity=0.167  Sum_probs=64.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCC-CEEEEEeCChhHHHHHHHHHHHh---CC-------------------------
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPES-GCLVACERDARSLEVAKKYYERA---GV-------------------------  169 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~-~~v~~iD~s~~~~~~a~~~~~~~---g~-------------------------  169 (279)
                      .+-++.|-.||.|+....+.-..++. .+|++-|+++++++.|++|+...   |+                         
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            45699999999999877766543322 48999999999999998875421   11                         


Q ss_pred             -------------CCcEEEEEcChhhHH--HHHHhCCCCCcEEEEEEeCCc------------cchHHHHHHHHccCCCC
Q 023645          170 -------------SHKVKIKHGLAADSL--KALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVG  222 (279)
Q Consensus       170 -------------~~~v~~~~gd~~~~l--~~~~~~~~~~~fDlI~id~~~------------~~~~~~l~~~~~~Lk~g  222 (279)
                                   .....+.+.|+++.-  ... ..  ....|+|+.|-+.            .....+|+.+.+.|.++
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~-~~--~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~  207 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVL-DA--GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPER  207 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHH-HT--T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhh-cc--CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCC
Confidence                         123567777776632  122 11  2446999998541            12567899999999777


Q ss_pred             cEEEEe
Q 023645          223 GIIVID  228 (279)
Q Consensus       223 G~lv~d  228 (279)
                      +++++.
T Consensus       208 sVV~v~  213 (246)
T PF11599_consen  208 SVVAVS  213 (246)
T ss_dssp             -EEEEE
T ss_pred             cEEEEe
Confidence            888873

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.79  E-value=0.084  Score=48.75  Aligned_cols=108  Identities=18%  Similarity=0.214  Sum_probs=68.7

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC-hhhHHHHHHhCC
Q 023645          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNG  191 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd-~~~~l~~~~~~~  191 (279)
                      +....++.+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++..   +. ..+.....+ ..+.+..+.   
T Consensus       179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~---  250 (386)
T cd08283         179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT---  250 (386)
T ss_pred             hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc---
Confidence            34455678999999987 888888888875 246999999999888877743   22 112222221 222222221   


Q ss_pred             CCCcEEEEEEeCCc------------------cchHHHHHHHHccCCCCcEEEEeC
Q 023645          192 EASSYDFAFVDAEK------------------RMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       192 ~~~~fDlI~id~~~------------------~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ....+|+||-....                  .+....++.+.+.|+++|.++.-.
T Consensus       251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            12468988753321                  112456788899999999988754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.76  E-value=0.044  Score=48.40  Aligned_cols=95  Identities=16%  Similarity=0.084  Sum_probs=63.1

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i  201 (279)
                      +|+|+.||.|..+..+..+.  -..+.++|+++.+.+..+.++..       .++++|..+......    ...+|+++.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~----~~~~D~l~~   68 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDF----IPDIDLLTG   68 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhc----CCCCCEEEe
Confidence            69999999999988887652  23678999999999888877642       155677765433210    256999987


Q ss_pred             eCCc------------cc-----hHHHHHHHHccCCCCcEEEEeCCC
Q 023645          202 DAEK------------RM-----YQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       202 d~~~------------~~-----~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +.+.            .+     ...++ .+.+.++|. ++++.||.
T Consensus        69 gpPCq~fS~ag~~~~~~d~r~~L~~~~~-~~i~~~~P~-~~v~ENV~  113 (275)
T cd00315          69 GFPCQPFSIAGKRKGFEDTRGTLFFEII-RILKEKKPK-YFLLENVK  113 (275)
T ss_pred             CCCChhhhHHhhcCCCCCchHHHHHHHH-HHHHhcCCC-EEEEEcCc
Confidence            6531            11     12233 334556775 88888884

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.68  E-value=0.04  Score=42.31  Aligned_cols=92  Identities=21%  Similarity=0.318  Sum_probs=61.7

Q ss_pred             ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccch
Q 023645          129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY  208 (279)
Q Consensus       129 G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~  208 (279)
                      |.|..+..+++..+  ++|+++|.+++..+.+++    .|...-+.....|..+.+..+.   ....+|+||-....   
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~---~~~~~d~vid~~g~---   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELT---GGRGVDVVIDCVGS---   68 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHT---TTSSEEEEEESSSS---
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccccccccccccccccccccc---ccccceEEEEecCc---
Confidence            45888999999875  899999999988777765    3422111112222333443331   12479999866552   


Q ss_pred             HHHHHHHHccCCCCcEEEEeCCCC
Q 023645          209 QEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       209 ~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      ...++....+|+++|.+++-...-
T Consensus        69 ~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   69 GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             HHHHHHHHHHhccCCEEEEEEccC
Confidence            357888999999999999865543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.66  E-value=0.033  Score=52.55  Aligned_cols=130  Identities=13%  Similarity=0.142  Sum_probs=75.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      .-++|+|..+|.|.++..|.+.     .|+.+-..|..-.-.-..+-.-|+-.    +..|..+.++..     ..+||+
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGLIG----~yhDWCE~fsTY-----PRTYDL  430 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGLIG----VYHDWCEAFSTY-----PRTYDL  430 (506)
T ss_pred             ceeeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhcccch----hccchhhccCCC-----Ccchhh
Confidence            3468999999999999888753     24333333321111111122223321    111333322222     578999


Q ss_pred             EEEeCC------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecC--
Q 023645          199 AFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIG--  270 (279)
Q Consensus       199 I~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~--  270 (279)
                      |-.++-      .-.....+-++-+.|||||.+++.|-.                .+-+-.+.+...=++++.+.-..  
T Consensus       431 lHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~----------------~vl~~v~~i~~~lrW~~~~~d~e~g  494 (506)
T PF03141_consen  431 LHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV----------------DVLEKVKKIAKSLRWEVRIHDTEDG  494 (506)
T ss_pred             eehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH----------------HHHHHHHHHHHhCcceEEEEecCCC
Confidence            977653      233556777788999999999996542                12223444556666777666553  


Q ss_pred             ----CceEEEEE
Q 023645          271 ----DGMTICQK  278 (279)
Q Consensus       271 ----~G~~i~~~  278 (279)
                          ..+++|+|
T Consensus       495 ~~~~EkiL~~~K  506 (506)
T PF03141_consen  495 PDGPEKILICQK  506 (506)
T ss_pred             CCCCceEEEEEC
Confidence                46888876

; GO: 0008168 methyltransferase activity

>PRK13699 putative methylase; Provisional

Probab=95.49  E-value=0.023  Score=48.79  Aligned_cols=51  Identities=14%  Similarity=0.226  Sum_probs=40.1

Q ss_pred             EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc------------------chHHHHHHHHccCCCCcEEEE
Q 023645          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~------------------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +++++||+.+.+..+.    ++++|+||.|++..                  .....+.++.++|||||.+++
T Consensus         2 ~~l~~gD~le~l~~lp----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARFP----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhCC----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3688999999888774    68999999997631                  124567888899999998875

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.43  E-value=0.01  Score=52.34  Aligned_cols=103  Identities=16%  Similarity=0.208  Sum_probs=70.2

Q ss_pred             CCCEEEEEcCccCHHHH-HHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          119 GAQRCIEVGVYTGYSSL-AIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~-~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .+..|+|+-+|-||+|+ .+..+ + ...|+++|.+|..++..+++++.+++.++..++.||-...-+       ....|
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~a-g-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~-------~~~Ad  264 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTA-G-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP-------RLRAD  264 (351)
T ss_pred             ccchhhhhhcccceEEeehhhcc-C-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc-------cccch
Confidence            34789999999999999 55544 2 368999999999999999999998888777777777643211       35667


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCC-c-EEEEeCCC
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVG-G-IIVIDNVL  231 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~g-G-~lv~dd~~  231 (279)
                      -|.+.--+..- +-.-.+.+.|||. | ++=++..+
T Consensus       265 rVnLGLlPSse-~~W~~A~k~Lk~eggsilHIHenV  299 (351)
T KOG1227|consen  265 RVNLGLLPSSE-QGWPTAIKALKPEGGSILHIHENV  299 (351)
T ss_pred             heeeccccccc-cchHHHHHHhhhcCCcEEEEeccc
Confidence            77665322211 1223345666664 4 56555443

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.40  E-value=0.076  Score=45.30  Aligned_cols=89  Identities=17%  Similarity=0.191  Sum_probs=58.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-CCCCcEEEEEcChh-hHHHHHHhCCCCCcEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAA-DSLKALILNGEASSYDF  198 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd~~-~~l~~~~~~~~~~~fDl  198 (279)
                      .++||||+|.-.+=-.+.... -+-+.+|.|+++..++.|+.++..+ +++..++++...-. ..++.+..  ..+.||+
T Consensus        80 i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig--~nE~yd~  156 (292)
T COG3129          80 IRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG--KNERYDA  156 (292)
T ss_pred             eEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc--ccceeee
Confidence            478999987543222121111 1458999999999999999999887 77777877654332 23333321  1578999


Q ss_pred             EEEeCCccchHHHH
Q 023645          199 AFVDAEKRMYQEYF  212 (279)
Q Consensus       199 I~id~~~~~~~~~l  212 (279)
                      +.|+++.+...+..
T Consensus       157 tlCNPPFh~s~~da  170 (292)
T COG3129         157 TLCNPPFHDSAADA  170 (292)
T ss_pred             EecCCCcchhHHHH
Confidence            99998865544433

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=95.38  E-value=0.18  Score=39.96  Aligned_cols=101  Identities=17%  Similarity=0.216  Sum_probs=54.4

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      .-|||+|-|.|..=-.+-+.+| +-+|+.+|-.-......        ....-.++.||+.+.++.+...  ..+.-++-
T Consensus        30 G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp~~--------~P~~~~~ilGdi~~tl~~~~~~--g~~a~laH   98 (160)
T PF12692_consen   30 GPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHPSS--------TPPEEDLILGDIRETLPALARF--GAGAALAH   98 (160)
T ss_dssp             S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GGG-----------GGGEEES-HHHHHHHHHHH---S-EEEEE
T ss_pred             CceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCCCC--------CCchHheeeccHHHHhHHHHhc--CCceEEEE
Confidence            4799999999999999999998 78999999753221110        1122368999999988873221  34555555


Q ss_pred             EeCCccchH---HH----HHHHHccCCCCcEEEEeCCCC
Q 023645          201 VDAEKRMYQ---EY----FELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       201 id~~~~~~~---~~----l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      .|-...+..   ..    -..+.++|.|||++|-..-+.
T Consensus        99 aD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~  137 (160)
T PF12692_consen   99 ADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY  137 (160)
T ss_dssp             E----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred             eecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence            554322211   11    123358999999999877654

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.34  E-value=0.21  Score=47.91  Aligned_cols=106  Identities=14%  Similarity=0.134  Sum_probs=66.0

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEE--Ec-------------Chh
Q 023645          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HG-------------LAA  181 (279)
Q Consensus       118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~--~g-------------d~~  181 (279)
                      .++.+|+-+|+|. |..++..++.++  ++|+++|.+++..+.+++    .|-.. +.+-  ..             +..
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~-v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEF-LELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeE-EEeccccccccccchhhhcchhHH
Confidence            4688999999995 667777888875  689999999998887776    23210 1110  00             111


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccc--hHHH-HHHHHccCCCCcEEEEeCCC
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRM--YQEY-FELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~--~~~~-l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +.......+. -..+|+||.......  .+.. .+...+.+||||+++.=.+-
T Consensus       236 ~~~~~~~~~~-~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~  287 (509)
T PRK09424        236 KAEMALFAEQ-AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE  287 (509)
T ss_pred             HHHHHHHHhc-cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence            1111111100 146999997665322  2234 58899999999998865443

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=95.31  E-value=0.018  Score=50.46  Aligned_cols=102  Identities=21%  Similarity=0.175  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH
Q 023645          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (279)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (279)
                      |.+.+++...   ..+..++|+|||.|-.+.     ..+.+.++++|++...+..+++.       +......+|+....
T Consensus        34 p~v~qfl~~~---~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p   98 (293)
T KOG1331|consen   34 PMVRQFLDSQ---PTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLP   98 (293)
T ss_pred             HHHHHHHhcc---CCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCC
Confidence            3444444433   235689999999995432     11356899999998887666541       21256667776543


Q ss_pred             HHHHhCCCCCcEEEEEEeCC------ccchHHHHHHHHccCCCCcEEEE
Q 023645          185 KALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       185 ~~~~~~~~~~~fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ..      +.+||.++.-+.      .......++++.+.|+|||-..+
T Consensus        99 ~~------~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen   99 FR------EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             CC------CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            22      578999875443      23355688999999999998776

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.28  E-value=0.16  Score=44.02  Aligned_cols=101  Identities=19%  Similarity=0.211  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHH-----HHhCCCCcEEEEE---cChhhHHHHHHhC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-----ERAGVSHKVKIKH---GLAADSLKALILN  190 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-----~~~g~~~~v~~~~---gd~~~~l~~~~~~  190 (279)
                      ...+|||+|+|+|..++.++...  ...|+..|... ..+..+.+.     ..+++...+.+..   ++..+. ...   
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~-~~~---  158 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV-SFR---  158 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH-hhc---
Confidence            46689999999998888888754  47888888754 333333332     2222222343332   222221 111   


Q ss_pred             CCCCc-EEEEEEeC-C--ccchHHHHHHHHccCCCCcEEEEe
Q 023645          191 GEASS-YDFAFVDA-E--KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       191 ~~~~~-fDlI~id~-~--~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                        ... ||+|+... .  .+.+......+..+|..+|.+.+-
T Consensus       159 --~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~  198 (248)
T KOG2793|consen  159 --LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA  198 (248)
T ss_pred             --cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence              233 89988642 2  445666677777888888855553

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=95.28  E-value=0.031  Score=43.31  Aligned_cols=83  Identities=20%  Similarity=0.285  Sum_probs=53.7

Q ss_pred             cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChh
Q 023645          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK  245 (279)
Q Consensus       172 ~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~  245 (279)
                      .+++..||+.+.++.+     ...||+||.|+-      .-...++++.+.+++++||++..-.+  .|           
T Consensus        32 ~L~L~~gDa~~~l~~l-----~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~--a~-----------   93 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL-----DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS--AG-----------   93 (124)
T ss_dssp             EEEEEES-HHHHHHHB------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----BH-----------
T ss_pred             EEEEEEcHHHHHHHhC-----cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec--hH-----------
Confidence            3678999999999887     689999999963      22357899999999999999987322  11           


Q ss_pred             hHHHHHHHHHhhhCCCeEEEEeec---CCceEEEEE
Q 023645          246 TISIRNFNKNLMEDERVSISMVPI---GDGMTICQK  278 (279)
Q Consensus       246 ~~~~~~~~~~l~~~~~~~~~~lp~---~~G~~i~~~  278 (279)
                            ..+.-...-+|.+...|-   -..+++|.|
T Consensus        94 ------~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~  123 (124)
T PF05430_consen   94 ------AVRRALQQAGFEVEKVPGFGRKREMLRAVK  123 (124)
T ss_dssp             ------HHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred             ------HHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence                  123333566788777662   234555543

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PRK11524 putative methyltransferase; Provisional

Probab=95.06  E-value=0.042  Score=48.79  Aligned_cols=53  Identities=25%  Similarity=0.382  Sum_probs=40.5

Q ss_pred             cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccc---------------h----HHHHHHHHccCCCCcEEEEe
Q 023645          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM---------------Y----QEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       172 ~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~---------------~----~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..+++++|+.+.+..+.    +++||+||+|++...               +    ...+..+.++|||||.+++.
T Consensus         8 ~~~i~~gD~~~~l~~l~----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIP----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcc----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            35789999998776552    578999999976311               1    35678888999999999873

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.01  E-value=0.16  Score=45.91  Aligned_cols=99  Identities=20%  Similarity=0.268  Sum_probs=59.5

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .++++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....+..    .....  .+.+
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~----~~~~~--~g~~  236 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLD----HYKAE--KGYF  236 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHH----HHhcc--CCCC
Confidence            357789988875 3445555666653 2379999999988877765    343211111111221    11111  2459


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |+||-....   ...++.+.+.|++||.++.-..
T Consensus       237 D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        237 DVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             CEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence            988854432   2356778889999999987543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.72  E-value=0.14  Score=38.45  Aligned_cols=88  Identities=23%  Similarity=0.231  Sum_probs=59.0

Q ss_pred             CccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcEEEEEEeCC
Q 023645          128 VYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDFAFVDAE  204 (279)
Q Consensus       128 ~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~fDlI~id~~  204 (279)
                      ||.|..+..+++.+..++ +|+.+|.+++..+.+++    .+    +.++.||..+.  +...    .-.+.|.|++...
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a----~i~~a~~vv~~~~   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERA----GIEKADAVVILTD   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHT----TGGCESEEEEESS
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhc----CccccCEEEEccC
Confidence            677889999988876556 89999999988766554    22    57899999753  3332    1367888888766


Q ss_pred             ccchHHHHHHHHccCCCCcEEEE
Q 023645          205 KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       205 ~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .....-..-...+.+.|...+++
T Consensus        72 ~d~~n~~~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   72 DDEENLLIALLARELNPDIRIIA   94 (116)
T ss_dssp             SHHHHHHHHHHHHHHTTTSEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCeEEE
Confidence            44433344444566677777776

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=94.66  E-value=0.1  Score=43.82  Aligned_cols=52  Identities=21%  Similarity=0.227  Sum_probs=37.0

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHH
Q 023645          108 AQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (279)
Q Consensus       108 ~~~l~~l~~~--~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (279)
                      .+++..++..  .++..|||.-||+|..+....+ +  +-+.+|+|++++..+.|++
T Consensus       178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~-l--~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEE-L--GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHH-T--T-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccceeeehhhhccChHHHHHHH-c--CCeEEEEeCCHHHHHHhcC
Confidence            4455555543  4577999999999987776555 4  3489999999999999875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.63  E-value=0.38  Score=42.93  Aligned_cols=100  Identities=21%  Similarity=0.296  Sum_probs=61.6

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ....+.+||..|+| .|..+..+++..  +.+|++++.+++..+.+++    .|....+.....+..+.+ ...   ...
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~---~~~  231 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG---LGG  231 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh---cCC
Confidence            34566788888876 367777778776  4789999999987766643    344321111111221222 111   145


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .+|+++.....   ...++.+.+.|+++|.++.-
T Consensus       232 ~~D~vid~~g~---~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         232 GFDVIFDFVGT---QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             CceEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence            79987743322   24677888999999999864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=94.63  E-value=0.96  Score=39.62  Aligned_cols=109  Identities=11%  Similarity=0.138  Sum_probs=65.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC--CCcEEEEEcChhhH-HHHHHhCC-CCCc
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAADS-LKALILNG-EASS  195 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~v~~~~gd~~~~-l~~~~~~~-~~~~  195 (279)
                      ...|+.+|||.=.-...+  ..+.+.+++=+|. |+.++.-++.+.+.+.  ..+.+++..|+.+. ...+...+ +.+.
T Consensus        82 ~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~  158 (260)
T TIGR00027        82 IRQVVILGAGLDTRAYRL--PWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA  158 (260)
T ss_pred             CcEEEEeCCccccHHHhc--CCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence            557999999654433333  2232456666666 4566666677776542  45688898888643 23332222 1223


Q ss_pred             EEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          196 YDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       196 fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      .-++++-+.     .+.....++.+.....||+.|++|-+.
T Consensus       159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            334444432     455667888888888899999998553

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.53  E-value=0.42  Score=44.09  Aligned_cols=105  Identities=11%  Similarity=0.248  Sum_probs=62.9

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC------C-
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------E-  192 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~------~-  192 (279)
                      .+|--||-  |+.++.+|-.+.. +.+|+|+|+++..++....     |   +..+..-+..+.+......|      + 
T Consensus        10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~   79 (436)
T COG0677          10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP   79 (436)
T ss_pred             eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence            35555655  6666666655542 4689999999987765433     2   12233223322232222211      0 


Q ss_pred             --CCcEEEEEEeCC----------ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          193 --ASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       193 --~~~fDlI~id~~----------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                        -..-|++++..+          ........+.+.+.|++|-++++....++|.
T Consensus        80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT  134 (436)
T COG0677          80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT  134 (436)
T ss_pred             hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence              125566665322          2224556677789999999999999999997

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=94.51  E-value=0.15  Score=45.42  Aligned_cols=118  Identities=14%  Similarity=0.110  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhhcCC-------CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc-------
Q 023645          107 QAQLLAMLVQILGA-------QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-------  172 (279)
Q Consensus       107 ~~~~l~~l~~~~~~-------~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-------  172 (279)
                      ...++..+....++       .+||--|||.|..+..++....   .+-|=|.|--|+-...=.+......++       
T Consensus       131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfI  207 (369)
T KOG2798|consen  131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFI  207 (369)
T ss_pred             hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeee
Confidence            34455555544433       4899999999999999997633   455556665554332222211112221       


Q ss_pred             --------------------------------EEEEEcChhhHHHHHHhCCCCCcEEEEEEe---CCccchHHHHHHHHc
Q 023645          173 --------------------------------VKIKHGLAADSLKALILNGEASSYDFAFVD---AEKRMYQEYFELLLQ  217 (279)
Q Consensus       173 --------------------------------v~~~~gd~~~~l~~~~~~~~~~~fDlI~id---~~~~~~~~~l~~~~~  217 (279)
                                                      ..+-.||+.+..+.-   .+.+.||+|+..   ...++..+|++.+.+
T Consensus       208 h~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s---~~~~~~d~VvTcfFIDTa~NileYi~tI~~  284 (369)
T KOG2798|consen  208 HQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTS---SGAGSYDVVVTCFFIDTAHNILEYIDTIYK  284 (369)
T ss_pred             eccccccccccccccccCccccccccCCCCCCccccccceeEEecCc---CCCCccceEEEEEEeechHHHHHHHHHHHH
Confidence                                            122234444332210   013468988532   124567899999999


Q ss_pred             cCCCCcEEEEeCC
Q 023645          218 LIRVGGIIVIDNV  230 (279)
Q Consensus       218 ~Lk~gG~lv~dd~  230 (279)
                      .|+|||+.|=-..
T Consensus       285 iLk~GGvWiNlGP  297 (369)
T KOG2798|consen  285 ILKPGGVWINLGP  297 (369)
T ss_pred             hccCCcEEEeccc
Confidence            9999999875433

>PRK11524 putative methyltransferase; Provisional

Probab=94.50  E-value=0.13  Score=45.59  Aligned_cols=56  Identities=5%  Similarity=-0.006  Sum_probs=43.9

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH
Q 023645          108 AQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  166 (279)
Q Consensus       108 ~~~l~~l~~~--~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~  166 (279)
                      ..++..++..  .++..|||-.+|+|..++...+ +  +-+.+|+|++++.++.|+++++.
T Consensus       195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHh
Confidence            4556666654  4678999999999987766554 4  34899999999999999999863

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.50  E-value=0.3  Score=44.29  Aligned_cols=94  Identities=18%  Similarity=0.117  Sum_probs=57.4

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .++.+||-+|+|. |..+..+++......+|+++|.+++..+.+++    .+.   . ...    +.+..      ...+
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~----~~~~~------~~g~  223 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLI----DDIPE------DLAV  223 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eeh----hhhhh------ccCC
Confidence            4578999999752 32334455542214589999999988777754    221   1 110    11111      2358


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |+||-..........++...++|++||.+++-.
T Consensus       224 d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         224 DHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             cEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence            988754433223457888899999999998744

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=94.37  E-value=0.28  Score=43.74  Aligned_cols=94  Identities=15%  Similarity=0.182  Sum_probs=61.7

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i  201 (279)
                      +++|+.||.|..++-+.++.  --.+.++|+++.+.+.-+.|+.        ....+|..+......    ...+|+++.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l----~~~~D~l~g   67 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL----PKDVDLLIG   67 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH----HHT-SEEEE
T ss_pred             cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc----cccceEEEe
Confidence            79999999999999888762  1368999999998888888774        777888877543322    115999886


Q ss_pred             eCC----------------ccc-hHHHHHHHHccCCCCcEEEEeCCC
Q 023645          202 DAE----------------KRM-YQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       202 d~~----------------~~~-~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ..+                ... +..+++ +...++|. ++++.||-
T Consensus        68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~-~v~~~~Pk-~~~~ENV~  112 (335)
T PF00145_consen   68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLR-IVKELKPK-YFLLENVP  112 (335)
T ss_dssp             E---TTTSTTSTHHCCCCHTTSHHHHHHH-HHHHHS-S-EEEEEEEG
T ss_pred             ccCCceEeccccccccccccchhhHHHHH-HHhhccce-EEEecccc
Confidence            543                111 223333 34556785 78889884

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=93.85  E-value=0.48  Score=42.95  Aligned_cols=107  Identities=21%  Similarity=0.205  Sum_probs=60.3

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++.+||-+|+|. |..+..+++..  +.+|+++|.+++..+.+++    .|...-+.....+..+............
T Consensus       163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~  236 (349)
T TIGR03201       163 GLKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKAR  236 (349)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccC
Confidence            345678999999854 55666677766  4689999999988777754    2432212211111111212111111122


Q ss_pred             cEE----EEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          195 SYD----FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       195 ~fD----lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      .+|    +|| |..-.  ...++.+.+.|++||.+++-...
T Consensus       237 g~d~~~d~v~-d~~g~--~~~~~~~~~~l~~~G~iv~~G~~  274 (349)
T TIGR03201       237 GLRSTGWKIF-ECSGS--KPGQESALSLLSHGGTLVVVGYT  274 (349)
T ss_pred             CCCCCcCEEE-ECCCC--hHHHHHHHHHHhcCCeEEEECcC
Confidence            454    454 43321  24566778899999999875543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=93.68  E-value=0.98  Score=41.08  Aligned_cols=102  Identities=13%  Similarity=0.149  Sum_probs=63.7

Q ss_pred             HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCC
Q 023645          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNG  191 (279)
Q Consensus       115 ~~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~  191 (279)
                      ....++.+||-.|+  +.|..+..+++..  +.+|++++.+++..+.+++.   .|...-+..... +..+.+....   
T Consensus       154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~---  225 (348)
T PLN03154        154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYF---  225 (348)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHC---
Confidence            34566789999987  3677777788876  47899999888776665432   344321222111 3333333221   


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                       .+.+|+||-....    ..+..+.+.|++||.+++-.
T Consensus       226 -~~gvD~v~d~vG~----~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        226 -PEGIDIYFDNVGG----DMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             -CCCcEEEEECCCH----HHHHHHHHHhccCCEEEEEC
Confidence             2468988843331    35678889999999998643

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.66  E-value=0.55  Score=43.03  Aligned_cols=102  Identities=24%  Similarity=0.307  Sum_probs=60.2

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++.+||-.|+|. |..+..+++..  +. +|+++|.+++..+.+++    .|...-+.....+..+.+....    .
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~----~  257 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT----G  257 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh----C
Confidence            345677888888752 44445566654  35 69999999988777754    3432211221122222222221    2


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +.+|+||-....   ...++.+.+.|+++|.++.-..
T Consensus       258 ~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         258 GGVDYAFEMAGS---VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEcc
Confidence            368988754322   2456777889999999886443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=93.58  E-value=0.18  Score=48.69  Aligned_cols=99  Identities=11%  Similarity=0.132  Sum_probs=63.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh-----HHHHHHhCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD-----SLKALILNGE  192 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~-----~l~~~~~~~~  192 (279)
                      .++..|||+||..|.|....++.+|.++-|+|+|+-|-..           .. ++.-.+.|+..     .+.....   
T Consensus        43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp-----------~~-~c~t~v~dIttd~cr~~l~k~l~---  107 (780)
T KOG1098|consen   43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP-----------IP-NCDTLVEDITTDECRSKLRKILK---  107 (780)
T ss_pred             cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc-----------CC-ccchhhhhhhHHHHHHHHHHHHH---
Confidence            4567899999999999999999999888999999987321           11 13223333321     1222222   


Q ss_pred             CCcEEEEEEeCCccc--------------hHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          193 ASSYDFAFVDAEKRM--------------YQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       193 ~~~fDlI~id~~~~~--------------~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      ..+.|+|+.|+.+.-              ....+..+...|+.||.+ ++.++.
T Consensus       108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~f-vtkvfr  160 (780)
T KOG1098|consen  108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTF-VTKVFR  160 (780)
T ss_pred             hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcc-cccccc
Confidence            345699998864211              233455556889999994 444543

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.52  E-value=2.5  Score=35.02  Aligned_cols=102  Identities=17%  Similarity=0.319  Sum_probs=56.9

Q ss_pred             EEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHH------------HHHhCCCCcEEEEEcChhhHHHHHH
Q 023645          122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKY------------YERAGVSHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~------------~~~~g~~~~v~~~~gd~~~~l~~~~  188 (279)
                      +|--+|.  |+.++.+|..+.. +.+|+++|++++.++..++.            +++.....+..+. .|..+.+    
T Consensus         2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai----   74 (185)
T PF03721_consen    2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI----   74 (185)
T ss_dssp             EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred             EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence            4556666  5555554444332 46999999999877665431            1111111223332 2222222    


Q ss_pred             hCCCCCcEEEEEEeCC----------ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          189 LNGEASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~----------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                           ...|++|+..+          ........+.+.+.+++|.++++...+.+|.
T Consensus        75 -----~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt  126 (185)
T PF03721_consen   75 -----KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT  126 (185)
T ss_dssp             -----HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH
T ss_pred             -----hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee
Confidence                 34678876432          2235667888889999999999999999987

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.50  E-value=0.39  Score=46.11  Aligned_cols=101  Identities=16%  Similarity=0.220  Sum_probs=59.0

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE---------------cChh
Q 023645          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH---------------GLAA  181 (279)
Q Consensus       118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~---------------gd~~  181 (279)
                      .++.+|+-+|+|. |..+..+++.+  ++.|+.+|.+++..+.+++    .|... +++-.               .+..
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~~-v~v~~~e~g~~~~gYa~~~s~~~~  234 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAEF-LELDFKEEGGSGDGYAKVMSEEFI  234 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCeE-EeccccccccccccceeecCHHHH
Confidence            3567999999984 56666677776  4689999999987766654    23211 11110               1111


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeC---CccchHHHHHHHHccCCCCcEEE
Q 023645          182 DSLKALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~---~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      +....+..+ .-..+|+||...   ......-..++..+.+|||++++
T Consensus       235 ~~~~~~~~e-~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       235 AAEMELFAA-QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             HHHHHHHHH-HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence            111111110 035699997655   22222235677789999998876

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.49  E-value=0.86  Score=41.48  Aligned_cols=103  Identities=19%  Similarity=0.264  Sum_probs=60.9

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++.+||-.|+|. |..+..+++..  +. +|+++|.+++..+.+++    .|...-+.....+..+.+....   ..
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~---~~  243 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT---GG  243 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh---CC
Confidence            345678999888742 44455566665  34 59999999988777754    3432112222223323222221   12


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ..+|+|+--...   ...++.....+++||.+++-..
T Consensus       244 ~g~d~vid~~g~---~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       244 FGADVVIDAVGR---PETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCCEEEECCCC---HHHHHHHHHHhccCCEEEEECC
Confidence            468988743322   2356677889999999987544

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.42  E-value=0.81  Score=40.95  Aligned_cols=94  Identities=13%  Similarity=0.173  Sum_probs=67.1

Q ss_pred             CCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          120 AQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       120 ~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      +.+|.-||-| .|..+..+|-.+  ++.|+-+|.|.+.++.....+.     .++.....+...+....      .+.|+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v------~~aDl  234 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAV------KKADL  234 (371)
T ss_pred             CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHh------hhccE
Confidence            4577788877 466777777666  5899999999998877766654     46777777765544433      57888


Q ss_pred             EEEe---CCccchHHHHHHHHccCCCCcEEE
Q 023645          199 AFVD---AEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       199 I~id---~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      ++-.   .....+.-..++..+.+|||++|+
T Consensus       235 vIgaVLIpgakaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         235 VIGAVLIPGAKAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             EEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence            8632   334445556778889999999876

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.35  E-value=1  Score=38.43  Aligned_cols=98  Identities=22%  Similarity=0.313  Sum_probs=60.2

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .++.+||..|+|. |..+..+++..  +.++++++.+++..+.+++    .+...-+.....+..+.+. .   .....+
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~---~~~~~~  202 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-L---TGGGGA  202 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-H---hcCCCC
Confidence            5678999999885 66666677765  4799999999877666543    2322111111112222111 1   114679


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+++......   .....+.+.|+++|.++.-
T Consensus       203 d~vi~~~~~~---~~~~~~~~~l~~~G~~v~~  231 (271)
T cd05188         203 DVVIDAVGGP---ETLAQALRLLRPGGRIVVV  231 (271)
T ss_pred             CEEEECCCCH---HHHHHHHHhcccCCEEEEE
Confidence            9998654321   3466677889999998864

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK13699 putative methylase; Provisional

Probab=93.34  E-value=0.33  Score=41.60  Aligned_cols=56  Identities=9%  Similarity=0.000  Sum_probs=42.4

Q ss_pred             HHHHHHHh--hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh
Q 023645          109 QLLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  167 (279)
Q Consensus       109 ~~l~~l~~--~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~  167 (279)
                      .++..++.  ..++..|||--||+|..+....+.   +-+++|+|++++..+.+.+.++..
T Consensus       151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence            34444443  246779999999999877766553   358999999999999999888753

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=93.28  E-value=0.39  Score=43.94  Aligned_cols=53  Identities=23%  Similarity=0.306  Sum_probs=42.6

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHH
Q 023645          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (279)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (279)
                      .+++..+....+...|+|+|.|.|+.+.+++-..  +-.|.+||-|....+.|++
T Consensus       142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence            4555666666788899999999999999998765  4799999999777666654

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.16  E-value=0.47  Score=43.23  Aligned_cols=48  Identities=17%  Similarity=0.111  Sum_probs=39.3

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-------CCCEEEEEeCChhHHHHHHHHHHHh
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLP-------ESGCLVACERDARSLEVAKKYYERA  167 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~-------~~~~v~~iD~s~~~~~~a~~~~~~~  167 (279)
                      +-.++|||.|+|....-+++.+.       ...++..||+|++..+.-++.++..
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            45899999999999988877651       2468999999999988888887753

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=93.02  E-value=1.1  Score=38.90  Aligned_cols=130  Identities=23%  Similarity=0.366  Sum_probs=65.8

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      ..++..+........   +..+.|+-.+.. ..+.+.-+.+.+|++|.-.+..++++..   ..++++++.|..+.+..+
T Consensus        47 ~~yl~~v~~~n~~~~---l~~YPGSP~ia~-~llR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~al  119 (245)
T PF04378_consen   47 QPYLDAVRALNPDGE---LRFYPGSPAIAA-RLLREQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKAL  119 (245)
T ss_dssp             HHHHHHHHHHSSSSS-----EEE-HHHHHH-HHS-TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH
T ss_pred             HHHHHHHHHhccCCC---cCcCCCCHHHHH-HhCCccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhh
Confidence            344444443333322   334555443332 2334467999999999999988888764   347999999999877666


Q ss_pred             HhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCC--CCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhh
Q 023645          188 ILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIR--VGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLME  258 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk--~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  258 (279)
                      ...  ..+=-+|+||.+   +.+|....+.+...++  +.|++++    |-...      +  ....+.|.+.+.+
T Consensus       120 lPP--~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~i----WYPi~------~--~~~~~~~~~~l~~  181 (245)
T PF04378_consen  120 LPP--PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAI----WYPIK------D--RERVDRFLRALKA  181 (245)
T ss_dssp             -S---TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEE----EEEES------S--HHHHHHHHHHHHH
T ss_pred             CCC--CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEE----Eeecc------c--HHHHHHHHHHHHh
Confidence            432  244569999987   4445555444444443  4566555    43321      1  1135667777654

; PDB: 2OO3_A.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=92.65  E-value=1.7  Score=38.60  Aligned_cols=100  Identities=15%  Similarity=0.178  Sum_probs=62.1

Q ss_pred             HHhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645          114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       114 l~~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      .....++.+||=.|.  +.|..+..+++..  +.++++++.+++..+.+++    .|...-+.....+..+.+...   .
T Consensus       138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~---~  208 (329)
T cd08294         138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA---A  208 (329)
T ss_pred             hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH---C
Confidence            344566788988874  4566677778776  4789999988887666654    354321222222332222222   1


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                       ...+|+|+-....    ..++...+.|+++|.++.
T Consensus       209 -~~gvd~vld~~g~----~~~~~~~~~l~~~G~iv~  239 (329)
T cd08294         209 -PDGIDCYFDNVGG----EFSSTVLSHMNDFGRVAV  239 (329)
T ss_pred             -CCCcEEEEECCCH----HHHHHHHHhhccCCEEEE
Confidence             2469988743221    456788899999999885

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=92.63  E-value=0.35  Score=38.44  Aligned_cols=43  Identities=21%  Similarity=0.219  Sum_probs=28.4

Q ss_pred             EEcCccC--HHHHHHH-HHCCCCCEEEEEeCChhHHHHHHHH--HHHh
Q 023645          125 EVGVYTG--YSSLAIA-LVLPESGCLVACERDARSLEVAKKY--YERA  167 (279)
Q Consensus       125 EiG~G~G--~~t~~la-~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~  167 (279)
                      |||++.|  ..+..+. +...++++|+++|++|...+..+++  +...
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            8999999  6666554 2344478999999999999998888  5544

; PDB: 2PY6_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=92.36  E-value=0.62  Score=43.97  Aligned_cols=96  Identities=7%  Similarity=0.054  Sum_probs=64.5

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i  201 (279)
                      ++|.+|||.-.....+-+..  --.|+.+|.|+-.++........  ......+...|.....-      ++++||+|+.
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~f------edESFdiVId  120 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLVF------EDESFDIVID  120 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhccC------CCcceeEEEe
Confidence            89999998876665554432  24799999999888776654431  22346777777754311      2678888874


Q ss_pred             eCC-------------ccchHHHHHHHHccCCCCcEEEE
Q 023645          202 DAE-------------KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       202 d~~-------------~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      -+.             .......+..+.++|++||..+.
T Consensus       121 kGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s  159 (482)
T KOG2352|consen  121 KGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS  159 (482)
T ss_pred             cCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence            221             12345678888999999998654

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=92.30  E-value=0.33  Score=42.19  Aligned_cols=47  Identities=19%  Similarity=0.077  Sum_probs=37.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCC-------CCEEEEEeCChhHHHHHHHHHHH
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYER  166 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~  166 (279)
                      +-+|+|+|.|+|..+.-+++.+..       ..+++.||.||.+.+..++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            459999999999999999887653       25899999999998888887765

; PDB: 4F3N_A 1ZKD_B.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=92.26  E-value=0.61  Score=40.99  Aligned_cols=102  Identities=17%  Similarity=0.208  Sum_probs=70.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHH-HHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIA-LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la-~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.|+-+|-- -..++.++ ..+|  .+|..+|+++..+....+..++.|+++ ++.+.-|....+|.-.    ..+|
T Consensus       151 L~gK~I~vvGDD-DLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~----~~kF  222 (354)
T COG1568         151 LEGKEIFVVGDD-DLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDL----KRKF  222 (354)
T ss_pred             cCCCeEEEEcCc-hhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHH----HhhC
Confidence            457789999933 33344333 3344  589999999999999999999999875 8888788877555432    5899


Q ss_pred             EEEEEeCC--ccchHHHHHHHHccCCCC---cEEEE
Q 023645          197 DFAFVDAE--KRMYQEYFELLLQLIRVG---GIIVI  227 (279)
Q Consensus       197 DlI~id~~--~~~~~~~l~~~~~~Lk~g---G~lv~  227 (279)
                      |+++.|++  ......++..=...|+.-   |++-+
T Consensus       223 DvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgi  258 (354)
T COG1568         223 DVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGI  258 (354)
T ss_pred             CeeecCchhhHHHHHHHHhccHHHhcCCCccceEee
Confidence            99988876  233444454444556654   55544

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=92.25  E-value=0.24  Score=44.28  Aligned_cols=79  Identities=23%  Similarity=0.280  Sum_probs=54.6

Q ss_pred             EEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH-HHHHHhCCCCCcEEEEEE
Q 023645          124 IEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNGEASSYDFAFV  201 (279)
Q Consensus       124 LEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~~~~~~~~~~fDlI~i  201 (279)
                      +|||+  |.+.++.+.... .+....++|++......|++++.++++++.+.+++....+. +........+..||++.+
T Consensus       107 iDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc  184 (419)
T KOG2912|consen  107 IDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC  184 (419)
T ss_pred             eeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence            67776  556666554322 23568999999999999999999999999898888765442 232211111345899888


Q ss_pred             eCC
Q 023645          202 DAE  204 (279)
Q Consensus       202 d~~  204 (279)
                      +++
T Consensus       185 NPP  187 (419)
T KOG2912|consen  185 NPP  187 (419)
T ss_pred             CCc
Confidence            765

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=92.24  E-value=0.12  Score=38.79  Aligned_cols=40  Identities=23%  Similarity=0.589  Sum_probs=28.8

Q ss_pred             cEEEEEEeCC---------ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          195 SYDFAFVDAE---------KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       195 ~fDlI~id~~---------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      +||+|++-..         .+....+|+.++..|+|||++|+.-=-|..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~s   49 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKS   49 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHH
Confidence            4899987543         345778999999999999999997655543

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PLN02740 Alcohol dehydrogenase-like

Probab=92.21  E-value=1.7  Score=39.97  Aligned_cols=102  Identities=14%  Similarity=0.218  Sum_probs=59.5

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE--cChhhHHHHHHhC
Q 023645          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILN  190 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~~~~~  190 (279)
                      ....++.+||-+|+| .|..+..+++..  +. +|+++|.+++..+.+++    .|...-+....  .+..+.+..+.  
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~--  265 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT--  265 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh--
Confidence            345667899999875 233445556655  35 69999999988877754    34432122111  11222233221  


Q ss_pred             CCCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeC
Q 023645          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN  229 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd  229 (279)
                        .+.+|+||-.....   ..+......+++| |.+++-.
T Consensus       266 --~~g~dvvid~~G~~---~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        266 --GGGVDYSFECAGNV---EVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             --CCCCCEEEECCCCh---HHHHHHHHhhhcCCCEEEEEc
Confidence              23699887544322   4566777888886 8877633

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=92.00  E-value=2.9  Score=37.28  Aligned_cols=101  Identities=18%  Similarity=0.193  Sum_probs=61.8

Q ss_pred             HHhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhC
Q 023645          114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILN  190 (279)
Q Consensus       114 l~~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~  190 (279)
                      .....++.+||=.|.  +.|..+..+++..  +.++++++.+++..+.+++    .|...-+..... +..+.....   
T Consensus       133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~---  203 (325)
T TIGR02825       133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA---  203 (325)
T ss_pred             HhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh---
Confidence            344566789998884  4667777788775  4689999988887666643    354321121111 222222222   


Q ss_pred             CCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                       ..+.+|+||-....    ..++...+.|++||.++.-
T Consensus       204 -~~~gvdvv~d~~G~----~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       204 -SPDGYDCYFDNVGG----EFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             -CCCCeEEEEECCCH----HHHHHHHHHhCcCcEEEEe
Confidence             12469988843322    2457788999999999863

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>TIGR00518 alaDH alanine dehydrogenase

Probab=91.99  E-value=0.89  Score=41.98  Aligned_cols=96  Identities=13%  Similarity=0.109  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       119 ~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ++.+|+-+|+| .|..+...+..+  +.+|+.+|.+++..+.+.+.+   +.  .+.....+. +.+...     -..+|
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~-~~l~~~-----l~~aD  232 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNA-YEIEDA-----VKRAD  232 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCH-HHHHHH-----HccCC
Confidence            56789999987 455556666665  368999999987655544332   11  122222222 223332     25689


Q ss_pred             EEEEeCC---ccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +|+....   .....-.-+.....++||++++-
T Consensus       233 vVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD  265 (370)
T TIGR00518       233 LLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD  265 (370)
T ss_pred             EEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence            9987542   11111123555677899877654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=91.96  E-value=1.6  Score=39.34  Aligned_cols=103  Identities=16%  Similarity=0.236  Sum_probs=58.8

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++.+||-.|+|. |..+..+++..+  . .|++++.+++..+.+++    .|...-+.....+ .+.+....   ..
T Consensus       157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G--~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~---~~  226 (347)
T PRK10309        157 QGCEGKNVIIIGAGTIGLLAIQCAVALG--AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL---RE  226 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh---cC
Confidence            344677999988742 444455666653  4 47899999887776643    3432111111112 12222221   13


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ..+|.+++|..-.  ...+....+.|++||.+++-..
T Consensus       227 ~~~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~  261 (347)
T PRK10309        227 LRFDQLILETAGV--PQTVELAIEIAGPRAQLALVGT  261 (347)
T ss_pred             CCCCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence            4688555554322  2467778899999999987543

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.82  E-value=0.25  Score=45.14  Aligned_cols=97  Identities=23%  Similarity=0.269  Sum_probs=73.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +.....=+..+++...++.+|+|+.|..|..|..++..+...+++.++|.+++..+..++.+..+|.+. ++...+|+..
T Consensus       197 lqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~  275 (413)
T KOG2360|consen  197 LQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLN  275 (413)
T ss_pred             EechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccC
Confidence            333334445566666778899999999999999999888778999999999999999999999999875 7777898876


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCC
Q 023645          183 SLKALILNGEASSYDFAFVDAE  204 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~  204 (279)
                      . +...   .-...-.|++|++
T Consensus       276 t-~~~~---~~~~v~~iL~Dps  293 (413)
T KOG2360|consen  276 T-ATPE---KFRDVTYILVDPS  293 (413)
T ss_pred             C-CCcc---cccceeEEEeCCC
Confidence            4 2110   0134456777654

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=91.80  E-value=2.7  Score=37.73  Aligned_cols=100  Identities=13%  Similarity=0.121  Sum_probs=62.2

Q ss_pred             HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCC
Q 023645          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNG  191 (279)
Q Consensus       115 ~~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~  191 (279)
                      ....++.+||=.|+  |.|..+..+++..  +.++++++.+++..+.+++.   .|...-+..... +..+.+...   .
T Consensus       147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~---~  218 (338)
T cd08295         147 CKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRY---F  218 (338)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHh---C
Confidence            44567789998886  4566667777775  47899998888776666542   344321221111 332323222   1


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                       ...+|+||-....    ..+..+.+.|+++|.++.
T Consensus       219 -~~gvd~v~d~~g~----~~~~~~~~~l~~~G~iv~  249 (338)
T cd08295         219 -PNGIDIYFDNVGG----KMLDAVLLNMNLHGRIAA  249 (338)
T ss_pred             -CCCcEEEEECCCH----HHHHHHHHHhccCcEEEE
Confidence             2569988843321    457788899999999885

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=91.77  E-value=0.83  Score=41.15  Aligned_cols=92  Identities=14%  Similarity=0.105  Sum_probs=59.5

Q ss_pred             EEEEcCccCHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645          123 CIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (279)
Q Consensus       123 VLEiG~G~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i  201 (279)
                      |+|+.||.|..+.-+.++   +.+ +.++|+++.+.+.-+.|+.     +  .+..+|..+.....     -..+|+++.
T Consensus         1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~-----~~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD-----IPDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh-----CCCcCEEEe
Confidence            689999999999888765   344 5689999998888777653     1  34567776653321     245898875


Q ss_pred             eCC------------ccc-----hHHHHHHHHccCCCCcEEEEeCCC
Q 023645          202 DAE------------KRM-----YQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       202 d~~------------~~~-----~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ..+            ..+     +..++ .+...++|. ++++.||-
T Consensus        66 g~PCq~fS~ag~~~~~~d~r~~L~~~~~-r~i~~~~P~-~~v~ENV~  110 (315)
T TIGR00675        66 GFPCQPFSIAGKRKGFEDTRGTLFFEIV-RILKEKKPK-FFLLENVK  110 (315)
T ss_pred             cCCCcccchhcccCCCCCchhhHHHHHH-HHHhhcCCC-EEEeeccH
Confidence            432            011     12222 233556775 88888884

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd08293 PTGR2 Prostaglandin reductase

Probab=91.65  E-value=2.3  Score=38.13  Aligned_cols=94  Identities=17%  Similarity=0.196  Sum_probs=58.2

Q ss_pred             CEEEEEcC--ccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          121 QRCIEVGV--YTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       121 ~~VLEiG~--G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .+||=.|.  |.|..+..+++..  +. +|++++.+++..+.+++.   .|...-+.....+..+.+..+   . ...+|
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~---~-~~gvd  226 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLREL---C-PEGVD  226 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHH---C-CCCce
Confidence            78988885  4666777788876  45 799999988776665543   344321222222333333332   1 25699


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +||-....    ..++.+.+.|+++|.++.
T Consensus       227 ~vid~~g~----~~~~~~~~~l~~~G~iv~  252 (345)
T cd08293         227 VYFDNVGG----EISDTVISQMNENSHIIL  252 (345)
T ss_pred             EEEECCCc----HHHHHHHHHhccCCEEEE
Confidence            88843222    125678889999999886

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=91.63  E-value=1  Score=40.85  Aligned_cols=99  Identities=17%  Similarity=0.082  Sum_probs=65.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC-cEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS-SYDF  198 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~-~fDl  198 (279)
                      ..+++|+.||.|...+-+..+.  ---+.++|+++.+++.-+.++..      ..++.+|..+......    .. .+|+
T Consensus         3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~----~~~~~Dv   70 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL----RKSDVDV   70 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc----cccCCCE
Confidence            3489999999999998887753  13578999999988887777652      3566677665433221    12 7898


Q ss_pred             EEEeCCc----------------cchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          199 AFVDAEK----------------RMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       199 I~id~~~----------------~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ++-..+.                ....-.+..+...++| -++|+.||-
T Consensus        71 ligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~  118 (328)
T COG0270          71 LIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVK  118 (328)
T ss_pred             EEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCc
Confidence            8754331                1111234445567788 799999984

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=91.61  E-value=1.8  Score=39.14  Aligned_cols=103  Identities=17%  Similarity=0.255  Sum_probs=64.9

Q ss_pred             HhhcCCCEEEEEcCc--cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ....++++||-.|..  .|..++.|++++.  ++++++-.+++..+.    ++..|-..-+.+...|+.+.+..+.   +
T Consensus       138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~----~~~lGAd~vi~y~~~~~~~~v~~~t---~  208 (326)
T COG0604         138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLEL----LKELGADHVINYREEDFVEQVRELT---G  208 (326)
T ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHH----HHhcCCCEEEcCCcccHHHHHHHHc---C
Confidence            335568899999844  4556777888864  366666666655443    3444544445555666665555442   1


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ...+|+|+-....    ..+......|+++|.++.-..
T Consensus       209 g~gvDvv~D~vG~----~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         209 GKGVDVVLDTVGG----DTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             CCCceEEEECCCH----HHHHHHHHHhccCCEEEEEec
Confidence            2469999854432    446667888999999887433

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=91.48  E-value=5.6  Score=37.31  Aligned_cols=105  Identities=10%  Similarity=0.185  Sum_probs=59.5

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC------CC
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------EA  193 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~------~~  193 (279)
                      ++|--||.|.  .+..++..+. .+.+|+++|.+++.++..+.     |.   +.+...+..+.+......+      ..
T Consensus         4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~   73 (415)
T PRK11064          4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----GE---IHIVEPDLDMVVKTAVEGGYLRATTTP   73 (415)
T ss_pred             cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----CC---CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence            4677788764  3344443332 14689999999987764221     11   1222222222221111000      01


Q ss_pred             CcEEEEEEeCCc----------cchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          194 SSYDFAFVDAEK----------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       194 ~~fDlI~id~~~----------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      ..-|+||+..+.          .......+.+.+.+++|.++|......+|.
T Consensus        74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt  125 (415)
T PRK11064         74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA  125 (415)
T ss_pred             ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence            246888876543          345556777889999999888888877775

>PTZ00357 methyltransferase; Provisional

Probab=91.45  E-value=0.88  Score=44.91  Aligned_cols=103  Identities=11%  Similarity=0.077  Sum_probs=65.9

Q ss_pred             EEEEEcCccCHHHHHHHHHC---CCCCEEEEEeCChhHHHHHHHHHH-HhCC-------CCcEEEEEcChhhHHHHHHhC
Q 023645          122 RCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYE-RAGV-------SHKVKIKHGLAADSLKALILN  190 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~-~~g~-------~~~v~~~~gd~~~~l~~~~~~  190 (279)
                      .|+-+|+|.|-..-...++.   ....+|++||.++..+.....+.. ...+       .++|+++..|..++-......
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            68999999999776655443   334689999999776545444332 1223       346999999998763210000


Q ss_pred             -----CCCCcEEEEEEe-----CCccchHHHHHHHHccCCC----CcE
Q 023645          191 -----GEASSYDFAFVD-----AEKRMYQEYFELLLQLIRV----GGI  224 (279)
Q Consensus       191 -----~~~~~fDlI~id-----~~~~~~~~~l~~~~~~Lk~----gG~  224 (279)
                           ..-+++|+|+.-     ++-+--++.|+-+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                 001479999853     2344556778888888876    675

>PLN02827 Alcohol dehydrogenase-like

Probab=91.41  E-value=2.1  Score=39.36  Aligned_cols=103  Identities=17%  Similarity=0.185  Sum_probs=58.7

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE--cChhhHHHHHHhCC
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG  191 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~~~~~~  191 (279)
                      ....++.+||-.|+|. |..+..+++..+ ...|+++|.+++..+.+++    .|...-+....  .+..+.+..+.   
T Consensus       189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~---  260 (378)
T PLN02827        189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT---  260 (378)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh---
Confidence            3455678999988642 334445566553 2368899998887766644    35422111111  12222222221   


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN  229 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd  229 (279)
                       .+.+|+||-....   ...+....+.+++| |.+++-.
T Consensus       261 -~~g~d~vid~~G~---~~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        261 -GGGADYSFECVGD---TGIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             -CCCCCEEEECCCC---hHHHHHHHHhhccCCCEEEEEC
Confidence             2368988754332   23466778889998 9998643

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=91.36  E-value=0.15  Score=47.15  Aligned_cols=65  Identities=18%  Similarity=0.054  Sum_probs=56.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc-EEEEEcChhhHHH
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLK  185 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~  185 (279)
                      .++..|-|+.||.|-.++.++..   +++|++-|.+++++++.+.++..+.+... ++++..|+.+++.
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence            45678999999999999888875   58999999999999999999998777665 8999999988773

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=91.30  E-value=2.2  Score=38.23  Aligned_cols=100  Identities=20%  Similarity=0.275  Sum_probs=57.7

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++.+||-+|+| .|..+..+++..+  .+ |++++.+++..+.+++    .|...-+.....+ .+.+....   ..
T Consensus       160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~---~~  229 (339)
T cd08239         160 GVSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT---SG  229 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh---CC
Confidence            34567899888864 2334455666653  55 9999999887766644    3432211221112 22222221   12


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..+|+||-.....   ..+....+.|+++|.+++-
T Consensus       230 ~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~  261 (339)
T cd08239         230 AGADVAIECSGNT---AARRLALEAVRPWGRLVLV  261 (339)
T ss_pred             CCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence            4799888543322   3456677889999999863

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=91.30  E-value=8.8  Score=33.36  Aligned_cols=135  Identities=16%  Similarity=0.176  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +......++..+-..+++.+ |..-||+-..+..+.+.   .-++..+|+.|+-....+.++.   -..++++..+|...
T Consensus        73 lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~  145 (279)
T COG2961          73 LPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFL  145 (279)
T ss_pred             chHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHH
Confidence            34555566666656555554 67777776666666554   4699999999999999999887   34579999999987


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCcc---chHHHHHHHHccCC--CCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhh
Q 023645          183 SLKALILNGEASSYDFAFVDAEKR---MYQEYFELLLQLIR--VGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLM  257 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~---~~~~~l~~~~~~Lk--~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~  257 (279)
                      .+......  .++=-+|++|++.+   +|....+.+...++  ++|+.++    |--..        ....+++|.+.+.
T Consensus       146 ~l~a~LPP--~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai----WYPik--------~r~~~~~f~~~L~  211 (279)
T COG2961         146 ALKAHLPP--KERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI----WYPIK--------DRRQIRRFLRALE  211 (279)
T ss_pred             HHhhhCCC--CCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE----EEeec--------chHHHHHHHHHHh
Confidence            66554322  24567999999844   45444444433333  3455554    32211        1234677877775


Q ss_pred             h
Q 023645          258 E  258 (279)
Q Consensus       258 ~  258 (279)
                      +
T Consensus       212 ~  212 (279)
T COG2961         212 A  212 (279)
T ss_pred             h
Confidence            4

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=91.14  E-value=2.1  Score=38.43  Aligned_cols=102  Identities=23%  Similarity=0.320  Sum_probs=58.6

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++.+||-.|+| .|..+..+++..+ ..++++++.+++..+.+++    .|...-+.....+..+.+....   ...
T Consensus       164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~---~~~  235 (347)
T cd05278         164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT---GGR  235 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc---CCC
Confidence            44567788887764 3556666777653 2478888888766655543    2322111222222222222221   135


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .+|++|-....   ...+....+.|+++|.++.-
T Consensus       236 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         236 GVDCVIEAVGF---EETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             CCcEEEEccCC---HHHHHHHHHHhhcCCEEEEE
Confidence            69988743222   14677788999999998853

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=91.13  E-value=3  Score=37.66  Aligned_cols=104  Identities=23%  Similarity=0.302  Sum_probs=61.5

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++.+||-.|+| .|..+..+++..+ ...++++|.+++..+.+++    .|...-+.....+..+.+..+.   ...
T Consensus       163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~~  234 (351)
T cd08285         163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT---GGK  234 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh---CCC
Confidence            44567788888865 3455566677654 2369999999877766654    3442212222222222222221   134


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .+|+++-....   ...+..+.+.|+++|.++.-.+
T Consensus       235 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         235 GVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             CCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence            69988754332   2456788889999999886443

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=91.09  E-value=3.4  Score=38.11  Aligned_cols=112  Identities=17%  Similarity=0.122  Sum_probs=75.5

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHH-------HHHhCC-CCcEEEEEcChhhH--HH
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY-------YERAGV-SHKVKIKHGLAADS--LK  185 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~-------~~~~g~-~~~v~~~~gd~~~~--l~  185 (279)
                      ...+.....|+|+|.|......+.... ...-+|+++.....+.|..+       .+..|. .+.++.+++++.+.  ..
T Consensus       189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~  267 (419)
T KOG3924|consen  189 KLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT  267 (419)
T ss_pred             ccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence            345677899999999999888876543 34567888877665555433       233344 34578889988652  22


Q ss_pred             HHHhCCCCCcEEEEEEeCCccc--hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          186 ALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       186 ~~~~~~~~~~fDlI~id~~~~~--~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      .+     ...-++||++...-+  ..--+++++.-+++|..|+-.+.+.+
T Consensus       268 eI-----~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~~  312 (419)
T KOG3924|consen  268 EI-----QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLVP  312 (419)
T ss_pred             HH-----hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccccccc
Confidence            33     356789998865222  22234577888999999998777655

>cd08230 glucose_DH Glucose dehydrogenase

Probab=90.91  E-value=1.4  Score=40.09  Aligned_cols=96  Identities=14%  Similarity=0.186  Sum_probs=57.3

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeC---ChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACER---DARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~---s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      .++.+||-+|+|. |..+..+++..  +.+|++++.   +++..+.++    +.|... +.....+..+ .. .     .
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~~-v~~~~~~~~~-~~-~-----~  236 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGATY-VNSSKTPVAE-VK-L-----V  236 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCEE-ecCCccchhh-hh-h-----c
Confidence            3577999998763 55566677765  468999987   565555544    334321 2111111111 11 1     3


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ..+|+||--....   ..+....+.|++||.+++-..
T Consensus       237 ~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         237 GEFDLIIEATGVP---PLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             CCCCEEEECcCCH---HHHHHHHHHccCCcEEEEEec
Confidence            5689887654422   357788899999999887443

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=90.88  E-value=3.2  Score=36.28  Aligned_cols=101  Identities=21%  Similarity=0.235  Sum_probs=58.5

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .++.+||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++    .|...  .+-..+..+.+..+.   ....+
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~~---~~~g~  188 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATA--LAEPEVLAERQGGLQ---NGRGV  188 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcE--ecCchhhHHHHHHHh---CCCCC
Confidence            366789988875 2444555666653 2248999999887766655    34321  111111111122111   12468


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      |+||-....   ...++.+.+.|+++|.++.-...
T Consensus       189 d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       189 DVALEFSGA---TAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             CEEEECCCC---hHHHHHHHHHhcCCCEEEEeccC
Confidence            988754332   24567788999999999875544

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=90.66  E-value=3.7  Score=37.55  Aligned_cols=102  Identities=17%  Similarity=0.213  Sum_probs=59.6

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE--cChhhHHHHHHhC
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILN  190 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~~~~~  190 (279)
                      ....++.+||-.|+|. |..+..+++..+  + +|+++|.+++..+.+++    .|...-+....  .+..+.+..+.  
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G--~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~--  252 (368)
T TIGR02818       181 AKVEEGDTVAVFGLGGIGLSVIQGARMAK--ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT--  252 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh--
Confidence            3445678999998752 445566677653  5 79999999988777754    34422121111  11222222221  


Q ss_pred             CCCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeC
Q 023645          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN  229 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd  229 (279)
                        .+.+|+||-....   ...+..+.+.+++| |.++.-.
T Consensus       253 --~~g~d~vid~~G~---~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       253 --DGGVDYSFECIGN---VNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             --CCCCCEEEECCCC---HHHHHHHHHHhhcCCCeEEEEe
Confidence              2368988754332   24566778889886 8877643

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=90.57  E-value=3  Score=37.26  Aligned_cols=108  Identities=15%  Similarity=0.169  Sum_probs=69.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC--CCcEEEEEcChh-h-HHHHHHhCC-CCC
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAA-D-SLKALILNG-EAS  194 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~v~~~~gd~~-~-~l~~~~~~~-~~~  194 (279)
                      ...|+-+|||-  -|...--..+.+.+|+=+|. |+.++.=++.+...+.  ..+++++..|+. + +...+.+.| +..
T Consensus        93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             ccEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            57899999964  34332222233467777777 6777777777776653  235889999987 3 455554433 223


Q ss_pred             cEEEEEEeC-----CccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~-----~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ..=++++-+     ..+....+|..+.....||..++++-.
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence            333444443     255677889999999888888877653

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=90.54  E-value=1.3  Score=34.20  Aligned_cols=94  Identities=13%  Similarity=0.033  Sum_probs=47.1

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .+++.....+|+|+|.|.=.-....+...  +..|+++|+++.       ...     ..+.++..|..+--..+     
T Consensus         7 ~ia~~~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~i-----   67 (127)
T PF03686_consen    7 YIARLNNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEI-----   67 (127)
T ss_dssp             HHHHHS-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S----------------STTEE---SSS--HHH-----
T ss_pred             HHHHhCCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-----cCcceeeecccCCCHHH-----
Confidence            34445566699999998765444333332  479999999987       111     23678888887632232     


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      -...|+|+.--+.......+-.+.+.  -|.-+++
T Consensus        68 Y~~a~lIYSiRPP~El~~~il~lA~~--v~adlii  100 (127)
T PF03686_consen   68 YEGADLIYSIRPPPELQPPILELAKK--VGADLII  100 (127)
T ss_dssp             HTTEEEEEEES--TTSHHHHHHHHHH--HT-EEEE
T ss_pred             hcCCcEEEEeCCChHHhHHHHHHHHH--hCCCEEE
Confidence            25789999876655555555555442  3444554

; PDB: 2K4M_A.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=90.54  E-value=2.9  Score=37.95  Aligned_cols=108  Identities=24%  Similarity=0.305  Sum_probs=66.8

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~~  192 (279)
                      ++..++.+|.-+|||. |..++.-|.... ..+++++|++++..+.|++.    |-.+-+.-... |..+.+..+-    
T Consensus       181 a~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~~~T----  251 (366)
T COG1062         181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIVELT----  251 (366)
T ss_pred             ccCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHHHHHhc----
Confidence            3455678999999974 555665565554 57999999999999888773    33322222212 4444444442    


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      ++..|.+|--...   .+.++..+..+.++|..++-.+--.|
T Consensus       252 ~gG~d~~~e~~G~---~~~~~~al~~~~~~G~~v~iGv~~~~  290 (366)
T COG1062         252 DGGADYAFECVGN---VEVMRQALEATHRGGTSVIIGVAGAG  290 (366)
T ss_pred             CCCCCEEEEccCC---HHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            3366777643321   23566677777779988875554333

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=90.52  E-value=3.3  Score=37.23  Aligned_cols=94  Identities=17%  Similarity=0.162  Sum_probs=58.0

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ....++.+||-.|+| .|..+..+++..  +.+|++++.+++..+.+++    .|...   ++  +..+. .       .
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi--~~~~~-~-------~  221 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AG--GAYDT-P-------P  221 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ec--ccccc-C-------c
Confidence            344567899999874 233445566665  4689999999887666554    45432   11  11010 0       2


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +.+|+++.....   ...+....+.|++||.+++-..
T Consensus       222 ~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       222 EPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             ccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence            457876643322   2467788899999999987544

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=90.43  E-value=6.7  Score=31.77  Aligned_cols=108  Identities=19%  Similarity=0.147  Sum_probs=60.5

Q ss_pred             CCHHHHHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          103 VSPDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~--~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      -+.++...+...+..  .+..+|+=|||=+-+..+.-  ....+.+++..|.+....        ..+  .. .|+.=|.
T Consensus         7 Ys~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~--------~~~--~~-~F~fyD~   73 (162)
T PF10237_consen    7 YSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFE--------QFG--GD-EFVFYDY   73 (162)
T ss_pred             cCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHH--------hcC--Cc-ceEECCC
Confidence            345555555554443  34578999998554444332  122356899999997543        222  12 2333333


Q ss_pred             hh--HHHHHHhCCCCCcEEEEEEeCCc--cc-hHHHHHHHHccCCCCcEEEE
Q 023645          181 AD--SLKALILNGEASSYDFAFVDAEK--RM-YQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       181 ~~--~l~~~~~~~~~~~fDlI~id~~~--~~-~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .+  .++...    .++||+|++|++.  +. .....+.+.-++++++.+++
T Consensus        74 ~~p~~~~~~l----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~  121 (162)
T PF10237_consen   74 NEPEELPEEL----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIIL  121 (162)
T ss_pred             CChhhhhhhc----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEE
Confidence            22  222211    5799999999984  22 22333444556677777775

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=89.83  E-value=11  Score=35.57  Aligned_cols=104  Identities=14%  Similarity=0.245  Sum_probs=62.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHH---HhCC-----CCcEEEEEcChhhHHHHHHhC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE---RAGV-----SHKVKIKHGLAADSLKALILN  190 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~---~~g~-----~~~v~~~~gd~~~~l~~~~~~  190 (279)
                      ++++|--||.  |+.++.++..+..+.+|+++|++++.++..++...   +.++     ..+..+. .+. +   .    
T Consensus         5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t-~~~-~---~----   73 (425)
T PRK15182          5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFT-SEI-E---K----   73 (425)
T ss_pred             CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEE-eCH-H---H----
Confidence            4467777765  77777777777656789999999988777652110   0000     0011111 111 1   1    


Q ss_pred             CCCCcEEEEEEeCCc----------cchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          191 GEASSYDFAFVDAEK----------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       191 ~~~~~fDlI~id~~~----------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                        -..-|++|+.-+.          .......+.+.+.|++|.++|......+|.
T Consensus        74 --~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgt  126 (425)
T PRK15182         74 --IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGC  126 (425)
T ss_pred             --HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcc
Confidence              1456888865331          122333456778899999999988888886

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=89.81  E-value=4.7  Score=36.82  Aligned_cols=103  Identities=18%  Similarity=0.213  Sum_probs=60.2

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc--ChhhHHHHHHhC
Q 023645          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILN  190 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~~~~~  190 (279)
                      ....++.+||-+|+| .|..+..+++..+  . +|+++|.+++..+.+++    .|...-+.....  +..+.+..+.  
T Consensus       182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G--~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~--  253 (368)
T cd08300         182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAG--ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT--  253 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh--
Confidence            345567899988864 2444555666653  5 79999999988776654    344221211111  1222222221  


Q ss_pred             CCCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 023645          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~  230 (279)
                        .+.+|+||-....   ...+..+.+.|+++ |.++.-..
T Consensus       254 --~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~  289 (368)
T cd08300         254 --DGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGV  289 (368)
T ss_pred             --CCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEcc
Confidence              2369988854332   24567778889887 88876443

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=89.78  E-value=2.2  Score=38.05  Aligned_cols=88  Identities=15%  Similarity=0.200  Sum_probs=51.1

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCC---CEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ++|.=||+|  ..+..++..+...   .+|+++|.+++..+.+++    .|...  . ...+.    ...     -...|
T Consensus         7 ~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~----~~~-----~~~aD   68 (307)
T PRK07502          7 DRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSA----AEA-----VKGAD   68 (307)
T ss_pred             cEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCH----HHH-----hcCCC
Confidence            478888875  4444444433222   389999999887665543    33311  1 11111    111     24578


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      +|++..+.......++.+.+.+++|++++
T Consensus        69 vViiavp~~~~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         69 LVILCVPVGASGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             EEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            88887766555666777777788876543

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=89.70  E-value=9.6  Score=36.44  Aligned_cols=105  Identities=9%  Similarity=0.062  Sum_probs=58.5

Q ss_pred             CEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHH---HhCC--------CCcEEEEEcChhhHHHHHH
Q 023645          121 QRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYE---RAGV--------SHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~---~~g~--------~~~v~~~~gd~~~~l~~~~  188 (279)
                      ++|.-||+|........+-+- +.+.+|+++|.+++.++..++...   +.++        ..+.++. .|..+.     
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~-----   75 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKH-----   75 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHH-----
Confidence            357778776544443322221 113679999999998776543210   0010        0012221 111111     


Q ss_pred             hCCCCCcEEEEEEeCC---------------ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          189 LNGEASSYDFAFVDAE---------------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~---------------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                          -..-|++|+..+               ........+.+.+.|++|-++|+......|.
T Consensus        76 ----i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt  133 (473)
T PLN02353         76 ----VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT  133 (473)
T ss_pred             ----HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence                134677776421               1134566777788999999999999988886

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=89.60  E-value=1.4  Score=39.31  Aligned_cols=87  Identities=15%  Similarity=0.139  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       119 ~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ++++||-+|+| .|..+..+++..+ ...|+++|.+++.++.+++.    .      ++  |..+.   .     ...+|
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~-----~~g~D  202 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P-----RRDYR  202 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c-----CCCCC
Confidence            46688888875 3556666777654 23477788888766555431    1      11  11110   0     35689


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +||-....   ...++.+.++|++||.+++-.
T Consensus       203 vvid~~G~---~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       203 AIYDASGD---PSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             EEEECCCC---HHHHHHHHHhhhcCcEEEEEe
Confidence            88754332   235677889999999999643

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=89.56  E-value=5.1  Score=35.79  Aligned_cols=102  Identities=18%  Similarity=0.303  Sum_probs=62.0

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .....++.+||-.|+|. |..+..+++..  +.+++++..+++..+.+++    .+...-+.....+..+.+....   .
T Consensus       154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~  224 (337)
T cd08261         154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT---D  224 (337)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh---C
Confidence            34455677999998763 66677778775  4789999888877766543    2332212222223323332221   1


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ...+|+++-....   ...+..+.+.|+++|.++.
T Consensus       225 ~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~  256 (337)
T cd08261         225 GEGADVVIDATGN---PASMEEAVELVAHGGRVVL  256 (337)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence            3468998864322   2356777888999998875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=89.33  E-value=2  Score=34.40  Aligned_cols=95  Identities=17%  Similarity=0.199  Sum_probs=55.8

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh------CCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA------GVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      +|.-||+|.+..++...-... +.+|+....+++.++..++.-...      .+..++.+ ..|..+.+         ..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---------~~   69 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---------ED   69 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---------TT
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---------Cc
Confidence            355677766555444322222 358999999987776655432210      11123333 23333222         45


Q ss_pred             EEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      -|+|++..+.....++++.+.+.++++-.+++
T Consensus        70 ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   70 ADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             -SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred             ccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence            69999988888888999999999988877775

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=89.23  E-value=3.2  Score=38.59  Aligned_cols=103  Identities=15%  Similarity=0.214  Sum_probs=57.2

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH---hCC-----CCcEEEEEcChhhHHHHHHhCCCC
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGV-----SHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~g~-----~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      +|--||.  |+.+..++..+..+.+|+++|++++.++..++....   .++     ....++....-   ....     .
T Consensus         2 kI~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~---~~~~-----~   71 (388)
T PRK15057          2 KITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLD---KNEA-----Y   71 (388)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecc---hhhh-----h
Confidence            3445555  555555554444356899999999998777652110   000     01112221100   0111     1


Q ss_pred             CcEEEEEEeCCc-----------cchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          194 SSYDFAFVDAEK-----------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       194 ~~fDlI~id~~~-----------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      ..-|+||+..+.           .......+.+.+ +++|.++|......+|.
T Consensus        72 ~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgt  123 (388)
T PRK15057         72 RDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGF  123 (388)
T ss_pred             cCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCch
Confidence            456888875431           223445566666 68998888888888886

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.20  E-value=3.7  Score=38.50  Aligned_cols=88  Identities=10%  Similarity=0.074  Sum_probs=56.3

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..+++|+-+|+|. |......++..  +++|+.+|.++...+.|++    .|.    +..  +..    ..     -...
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~----e~-----v~~a  258 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TME----EA-----VKEG  258 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHH----HH-----HcCC
Confidence            4678999999984 54555555655  4689999999987766654    243    211  111    11     1357


Q ss_pred             EEEEEeCCccchHHHHHH-HHccCCCCcEEEEeC
Q 023645          197 DFAFVDAEKRMYQEYFEL-LLQLIRVGGIIVIDN  229 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~-~~~~Lk~gG~lv~dd  229 (279)
                      |+||.....   ...+.. ....+|+||+++.-.
T Consensus       259 DVVI~atG~---~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         259 DIFVTTTGN---KDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CEEEECCCC---HHHHHHHHHhcCCCCcEEEEeC
Confidence            988865432   234544 478999999997644

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=89.08  E-value=3.8  Score=38.10  Aligned_cols=103  Identities=18%  Similarity=0.195  Sum_probs=60.1

Q ss_pred             hcCCCEEEEEcC-c-cCHHHHHHHHHCCCC-CEEEEEeCChhHHHHHHHHHHHh----CCCCcEEEEE----cChhhHHH
Q 023645          117 ILGAQRCIEVGV-Y-TGYSSLAIALVLPES-GCLVACERDARSLEVAKKYYERA----GVSHKVKIKH----GLAADSLK  185 (279)
Q Consensus       117 ~~~~~~VLEiG~-G-~G~~t~~la~~~~~~-~~v~~iD~s~~~~~~a~~~~~~~----g~~~~v~~~~----gd~~~~l~  185 (279)
                      ..++.+|+=+|+ | .|..+..+++....+ .+|+++|.+++..+.+++.+...    |..  ..++.    .+..+.+.
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~~v~  250 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHATLM  250 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHHHHH
Confidence            345678888873 3 566666677765312 37999999999998888753211    211  11221    12222222


Q ss_pred             HHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       186 ~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .+.   +...+|+||.....   ...+....+.++++|.+++
T Consensus       251 ~~t---~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~  286 (410)
T cd08238         251 ELT---GGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNF  286 (410)
T ss_pred             HHh---CCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence            221   13469988865432   2456778889998875543

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=88.90  E-value=2.5  Score=34.39  Aligned_cols=100  Identities=21%  Similarity=0.184  Sum_probs=58.8

Q ss_pred             EcCccCHHHHHHHHHCCCCCEEEE--EeCChhHHHH---HHHHHHHhCCCCcEEE-EEcChhhHHHHHHhCCCCCcEEEE
Q 023645          126 VGVYTGYSSLAIALVLPESGCLVA--CERDARSLEV---AKKYYERAGVSHKVKI-KHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       126 iG~G~G~~t~~la~~~~~~~~v~~--iD~s~~~~~~---a~~~~~~~g~~~~v~~-~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      +|=|.=++++.+++..+...++++  .|..++..+.   +.++++..... .+++ ..-|+...-.....  ....||.|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~~VDat~l~~~~~~--~~~~FDrI   79 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL-GVTVLHGVDATKLHKHFRL--KNQRFDRI   79 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc-CCccccCCCCCcccccccc--cCCcCCEE
Confidence            566777788888888764456555  4444433322   33555544222 2333 33455433222100  15789999


Q ss_pred             EEeCCccc----------------hHHHHHHHHccCCCCcEEEEe
Q 023645          200 FVDAEKRM----------------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       200 ~id~~~~~----------------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +.+.++..                ...+|+.+.++|+++|.|.+.
T Consensus        80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT  124 (166)
T PF10354_consen   80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT  124 (166)
T ss_pred             EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            98765322                345788888999999999884

>PRK08114 cystathionine beta-lyase; Provisional

Probab=88.60  E-value=8.3  Score=35.97  Aligned_cols=129  Identities=15%  Similarity=0.204  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCC-hhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s-~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +|....+=..++.+-.+...+-..+|++.....+...+.++.+|++.+.. .......++.+++.|.+  +.++...-.+
T Consensus        61 nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~--v~~vd~~d~~  138 (395)
T PRK08114         61 TLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVT--TTWFDPLIGA  138 (395)
T ss_pred             ChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcE--EEEECCCCHH
Confidence            45555555556666667788888998888776665556656787775432 34455556666666653  5555322223


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCc--cchHHHHHHHHccCC---CCcEEEEeCCCCCCcccC
Q 023645          183 SLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIR---VGGIIVIDNVLWHGKVAD  238 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~--~~~~~~l~~~~~~Lk---~gG~lv~dd~~~~g~~~~  238 (279)
                      .+....    ...-.+|++....  ......++.+.++.+   +|-.+++||+...+...+
T Consensus       139 ~l~~~l----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~  195 (395)
T PRK08114        139 DIAKLI----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFK  195 (395)
T ss_pred             HHHHhc----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccC
Confidence            333332    2345788887642  111122333433333   356888999876665433

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=88.40  E-value=5.3  Score=30.39  Aligned_cols=89  Identities=9%  Similarity=0.017  Sum_probs=55.0

Q ss_pred             HHHhhcCCCEEEEEcCccCH-HHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645          113 MLVQILGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~-~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      .++......+|+|+|.|.=. .+..+++.   +..++++|+++.          .++  ..++++..|..+---.+    
T Consensus         7 ~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~----------~a~--~g~~~v~DDitnP~~~i----   67 (129)
T COG1255           7 YIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK----------TAP--EGLRFVVDDITNPNISI----   67 (129)
T ss_pred             HHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEecccc----------cCc--ccceEEEccCCCccHHH----
Confidence            34445566799999987543 23333432   478999999986          112  23788888887532222    


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRV  221 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~  221 (279)
                       -...|+|+.--+......++-.+.+.++-
T Consensus        68 -Y~~A~lIYSiRpppEl~~~ildva~aVga   96 (129)
T COG1255          68 -YEGADLIYSIRPPPELQSAILDVAKAVGA   96 (129)
T ss_pred             -hhCccceeecCCCHHHHHHHHHHHHhhCC
Confidence             25678998766655555555555554433

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=88.39  E-value=9.5  Score=35.38  Aligned_cols=106  Identities=17%  Similarity=0.234  Sum_probs=60.1

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE-cChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~~~~~~~~  193 (279)
                      ...++.+||-.|+| .|..+..+++..+ ...++.+|.+++..+.+++    .|.. .+.... .+..+.+..+.   ..
T Consensus       182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~---~~  252 (393)
T TIGR02819       182 GVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQIL---GE  252 (393)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHc---CC
Confidence            34566788777764 2444455666653 2346677888877777665    3432 111111 12222232221   12


Q ss_pred             CcEEEEEEeCCcc-----------chHHHHHHHHccCCCCcEEEEeCC
Q 023645          194 SSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       194 ~~fDlI~id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ..+|++|--....           .....++.+..++++||.+++-.+
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence            4689887543322           113468888999999999998554

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=88.25  E-value=6.2  Score=35.92  Aligned_cols=104  Identities=16%  Similarity=0.231  Sum_probs=58.6

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc--ChhhHHHHHHhCC
Q 023645          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG  191 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~~~~~~  191 (279)
                      ....++.+||-.|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|...-+.....  +..+.+..+.   
T Consensus       183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~---  254 (369)
T cd08301         183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT---  254 (369)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence            345667899988864 2334455666653 2389999999987776644    343221211110  1112222221   


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~  230 (279)
                       .+.+|+++-....   ...+..+...+++| |.+++-..
T Consensus       255 -~~~~d~vid~~G~---~~~~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         255 -GGGVDYSFECTGN---IDAMISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             -CCCCCEEEECCCC---hHHHHHHHHHhhcCCCEEEEECc
Confidence             2368977743322   24566677888996 88886443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.16  E-value=9.2  Score=32.09  Aligned_cols=106  Identities=16%  Similarity=0.134  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--CC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~~  193 (279)
                      .+++||-.|++ |..+..+++.+. .+.+|++++.+++......+.....   .++.++.+|..+.  +....++-  .-
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35689999975 666666666552 3579999999887665544444322   2478888887642  11111100  02


Q ss_pred             CcEEEEEEeCCcc------c--------------hHHHHHHHHccCCCCcEEEEe
Q 023645          194 SSYDFAFVDAEKR------M--------------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       194 ~~fDlI~id~~~~------~--------------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +.+|.++......      .              ....++.+.+.++++|.+++-
T Consensus        80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~  134 (238)
T PRK05786         80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV  134 (238)
T ss_pred             CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence            4578887665311      0              112244555677778866653

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=88.13  E-value=1.3  Score=31.89  Aligned_cols=85  Identities=15%  Similarity=0.195  Sum_probs=52.4

Q ss_pred             EEEEcCccCHHHHHHHHHCCC-C---CEEE-EEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          123 CIEVGVYTGYSSLAIALVLPE-S---GCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       123 VLEiG~G~G~~t~~la~~~~~-~---~~v~-~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      |-=||+  |..+..+++.+-. +   .+|+ ..+.+++..+...+.+   +    +.+...+..+..         ..-|
T Consensus         2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~---------~~ad   63 (96)
T PF03807_consen    2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAA---------QEAD   63 (96)
T ss_dssp             EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHH---------HHTS
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhh---------ccCC
Confidence            344555  6667666665422 2   5888 4499998765554433   2    344443444443         3469


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      +||+...+....+.++.+ ..+.++..++
T Consensus        64 vvilav~p~~~~~v~~~i-~~~~~~~~vi   91 (96)
T PF03807_consen   64 VVILAVKPQQLPEVLSEI-PHLLKGKLVI   91 (96)
T ss_dssp             EEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred             EEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence            999999888888988888 6666766554

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=88.01  E-value=5.9  Score=35.59  Aligned_cols=103  Identities=19%  Similarity=0.287  Sum_probs=59.5

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh---hhHHHHHH
Q 023645          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLA---ADSLKALI  188 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~---~~~l~~~~  188 (279)
                      .....++.+||-.|+|. |..+..+++..+  .+ |++++.+++..+.+++    .|...-+.....+.   .+.+....
T Consensus       157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~  230 (343)
T cd05285         157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL  230 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence            34456677888877654 556666777654  55 8888888877666644    23322112111121   11122221


Q ss_pred             hCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                         ....+|+|+-.....   ..+....+.|+++|.++.-
T Consensus       231 ---~~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         231 ---GGKGPDVVIECTGAE---SCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             ---CCCCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence               134699888543321   2567778899999998853

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=87.93  E-value=7  Score=35.35  Aligned_cols=101  Identities=16%  Similarity=0.169  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          119 GAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       119 ~~~~VLEiG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ++.+||=.|+| .|..+..+++..  +. +|++++.+++..+.++    ..|...-+.....+..+....+........+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~  250 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA  250 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence            56788888754 233445556665  35 8999998887665553    3354321122111111111111111113469


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+||-....   ...+....+.|+++|.++.-
T Consensus       251 d~vid~~g~---~~~~~~~~~~l~~~G~~v~~  279 (361)
T cd08231         251 DVVIEASGH---PAAVPEGLELLRRGGTYVLV  279 (361)
T ss_pred             cEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence            988854322   23566778899999999863

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=87.85  E-value=7.4  Score=35.07  Aligned_cols=103  Identities=14%  Similarity=0.136  Sum_probs=60.3

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ....++.+||=.|+| .|..+..+++..  +. +|++++.+++..+.+++    .|...-+.....+..+.+....   .
T Consensus       168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~---~  238 (351)
T cd08233         168 SGFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT---G  238 (351)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh---C
Confidence            344567788888753 233445556655  35 89999998887776644    2432212222233333332221   1


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ...+|+|+-....   ...++.+.+.|+++|.++.=.
T Consensus       239 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g  272 (351)
T cd08233         239 GGGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVA  272 (351)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEc
Confidence            2459998854332   235677888999999988643

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=87.75  E-value=7.5  Score=35.41  Aligned_cols=102  Identities=16%  Similarity=0.292  Sum_probs=58.8

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc--ChhhHHHHHHhCC
Q 023645          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG  191 (279)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~~~~~~  191 (279)
                      ...++.+||-+|+| .|..+..+++..+  . +|+++|.+++..+.+++    .|...-+.....  +..+.+..+.   
T Consensus       181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G--~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~---  251 (365)
T cd08277         181 KVEPGSTVAVFGLGAVGLSAIMGAKIAG--ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT---  251 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh---
Confidence            44567899888864 2334455666653  5 79999999888777644    343221121111  1122222221   


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~  230 (279)
                       ...+|+||-....   ...+....+.++++ |.++.-..
T Consensus       252 -~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         252 -GGGVDYSFECTGN---ADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             -CCCCCEEEECCCC---hHHHHHHHHhcccCCCEEEEEcC
Confidence             2468988843332   24567788889885 88876443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=87.69  E-value=3.6  Score=38.14  Aligned_cols=92  Identities=13%  Similarity=0.121  Sum_probs=61.1

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc-EEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      +||-++=..|..+.+++..-+     +.+-=+--.....++|++.+|+... +++.  +..+.+        .+.+|+|+
T Consensus        47 ~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~--------~~~~d~vl  111 (378)
T PRK15001         47 PVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFL--DSTADY--------PQQPGVVL  111 (378)
T ss_pred             CEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceee--cccccc--------cCCCCEEE
Confidence            799999999999999985322     2331112223445788888887543 4444  222222        35699999


Q ss_pred             EeCCcc--chHHHHHHHHccCCCCcEEEEe
Q 023645          201 VDAEKR--MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       201 id~~~~--~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +-.++.  .....+..+.+.|.+|+.+++-
T Consensus       112 ~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g  141 (378)
T PRK15001        112 IKVPKTLALLEQQLRALRKVVTSDTRIIAG  141 (378)
T ss_pred             EEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            887744  3455677788999999998763

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=87.69  E-value=2.7  Score=39.04  Aligned_cols=83  Identities=19%  Similarity=0.170  Sum_probs=50.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC--CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE--SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY  196 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~--~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~f  196 (279)
                      ++||-||||  ..+...+..+..  ..+|+..|.+++..+.+.....     .+++..+-|+.+.  +..++     ..+
T Consensus         2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li-----~~~   69 (389)
T COG1748           2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI-----KDF   69 (389)
T ss_pred             CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH-----hcC
Confidence            479999994  444444443221  3699999999887766655432     2578888887653  43442     456


Q ss_pred             EEEEEeCCccchHHHHHHH
Q 023645          197 DFAFVDAEKRMYQEYFELL  215 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~  215 (279)
                      |+|+.-.+.......++.+
T Consensus        70 d~VIn~~p~~~~~~i~ka~   88 (389)
T COG1748          70 DLVINAAPPFVDLTILKAC   88 (389)
T ss_pred             CEEEEeCCchhhHHHHHHH
Confidence            9998765543333333333

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=87.61  E-value=6.8  Score=35.71  Aligned_cols=80  Identities=15%  Similarity=0.143  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCCh---------------------hHHHHHHHHHHHhCCCCcEEEE
Q 023645          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA---------------------RSLEVAKKYYERAGVSHKVKIK  176 (279)
Q Consensus       119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~---------------------~~~~~a~~~~~~~g~~~~v~~~  176 (279)
                      ...+||-||||. |......+...+ -++++.+|.+.                     ...+.+++.+++.+..-+++.+
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            456899999973 332222222222 35899999874                     2345666777766554446666


Q ss_pred             EcChh-hHHHHHHhCCCCCcEEEEEEeCC
Q 023645          177 HGLAA-DSLKALILNGEASSYDFAFVDAE  204 (279)
Q Consensus       177 ~gd~~-~~l~~~~~~~~~~~fDlI~id~~  204 (279)
                      ..+.. +.+..+     -..+|+|+...+
T Consensus       102 ~~~~~~~~~~~~-----~~~~DlVid~~D  125 (338)
T PRK12475        102 VTDVTVEELEEL-----VKEVDLIIDATD  125 (338)
T ss_pred             eccCCHHHHHHH-----hcCCCEEEEcCC
Confidence            65553 233333     356898886544

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=87.59  E-value=3.9  Score=36.54  Aligned_cols=94  Identities=21%  Similarity=0.273  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          119 GAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ++.+||-.|+|. |..+..+++..+  . ++++++.+++..+.+++    .+..   .++..+-.. +.....  ..+.+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G--~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~--~~~~v  232 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAG--AAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA--DKGDF  232 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc--cCCCc
Confidence            677888888764 556666777653  4 78999988877765544    2332   122111111 111111  12459


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |+++-....   ...++.+.+.|+++|.++.
T Consensus       233 d~vld~~g~---~~~~~~~~~~L~~~G~~v~  260 (339)
T cd08232         233 DVVFEASGA---PAALASALRVVRPGGTVVQ  260 (339)
T ss_pred             cEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence            998854332   2356778899999999885

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=87.57  E-value=11  Score=35.15  Aligned_cols=125  Identities=17%  Similarity=0.225  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCC-hhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s-~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +|....+-..++.+..+..++=..+|.+..+..+...+.++.+|+..+.- .......++.+...|+.  +.++..+-.+
T Consensus        54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~--v~~~d~~d~~  131 (386)
T PF01053_consen   54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVE--VTFVDPTDLE  131 (386)
T ss_dssp             -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSE--EEEESTTSHH
T ss_pred             cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcE--EEEeCchhHH
Confidence            45566666666666777888889999888877777777767788777643 33455566666666653  5555443334


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCC--cEEEEeCCCCCC
Q 023645          183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVG--GIIVIDNVLWHG  234 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~g--G~lv~dd~~~~g  234 (279)
                      .+....    ....++||+..+  +......++.+.++.+.-  -.+++||.+-..
T Consensus       132 ~l~~~l----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp  183 (386)
T PF01053_consen  132 ALEAAL----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP  183 (386)
T ss_dssp             HHHHHH----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred             HHHhhc----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence            444433    468899999765  222233455555555554  477788876443

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=87.37  E-value=7.2  Score=32.65  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=43.7

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCcEEEEEc
Q 023645          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG  178 (279)
Q Consensus       119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~g  178 (279)
                      ...+|+=+|||. |......+...+ -++++.+|.+.                   ...+.+.+.++..+..-+++.+..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~   98 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE   98 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence            456899999973 333333222222 36899999872                   334555666665443333444443


Q ss_pred             Chhh-HHHHHHhCCCCCcEEEEEEeCC
Q 023645          179 LAAD-SLKALILNGEASSYDFAFVDAE  204 (279)
Q Consensus       179 d~~~-~l~~~~~~~~~~~fDlI~id~~  204 (279)
                      ...+ .+...     -..+|+|+.-.+
T Consensus        99 ~i~~~~~~~~-----~~~~D~Vi~~~d  120 (202)
T TIGR02356        99 RVTAENLELL-----INNVDLVLDCTD  120 (202)
T ss_pred             cCCHHHHHHH-----HhCCCEEEECCC
Confidence            3322 22222     257999886544

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06940 short chain dehydrogenase; Provisional

Probab=87.30  E-value=7.3  Score=33.94  Aligned_cols=80  Identities=20%  Similarity=0.167  Sum_probs=50.2

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhC-CCCCcEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN-GEASSYD  197 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~-~~~~~fD  197 (279)
                      +.+|=.|+  |..+..+++.+..+.+|+.++.+++..+...+.++..+  .++.++.+|..+.  +..+... .+.+.+|
T Consensus         3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            35565564  57888888887667899999998876655555454333  3577788887542  2222111 0125789


Q ss_pred             EEEEeCC
Q 023645          198 FAFVDAE  204 (279)
Q Consensus       198 lI~id~~  204 (279)
                      .++..+.
T Consensus        79 ~li~nAG   85 (275)
T PRK06940         79 GLVHTAG   85 (275)
T ss_pred             EEEECCC
Confidence            9987654

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.28  E-value=6.5  Score=35.42  Aligned_cols=109  Identities=15%  Similarity=0.175  Sum_probs=65.7

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEE--EcChhhHHHHHHhC
Q 023645          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HGLAADSLKALILN  190 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~--~gd~~~~l~~~~~~  190 (279)
                      .++..++.+|.-+|+|. |.....-+++.+ .+++++||++++..+.|++.    |..+-+...  ...+.+.+.++-  
T Consensus       187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmT--  259 (375)
T KOG0022|consen  187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMT--  259 (375)
T ss_pred             hcccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHh--
Confidence            44566788999999875 434444455444 57999999999999888763    333222211  123445555443  


Q ss_pred             CCCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCCCCCC
Q 023645          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNVLWHG  234 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~~~~g  234 (279)
                        ++.+|+-|--..   ..+.+.+++...++| |.-++=.+.-.|
T Consensus       260 --dgGvDysfEc~G---~~~~m~~al~s~h~GwG~sv~iGv~~~~  299 (375)
T KOG0022|consen  260 --DGGVDYSFECIG---NVSTMRAALESCHKGWGKSVVIGVAAAG  299 (375)
T ss_pred             --cCCceEEEEecC---CHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence              577888874332   224455666666777 776664444333

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=87.15  E-value=8.4  Score=34.52  Aligned_cols=101  Identities=26%  Similarity=0.349  Sum_probs=56.8

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++.+||=.|+| .|..+..+++..+ ..++++++.+++....+++    .|...-+.....+....+..+.   ...
T Consensus       163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~~  234 (345)
T cd08286         163 KVKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT---DGR  234 (345)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh---CCC
Confidence            34456777777653 2333444566543 2578889988877665553    3443223333233322222221   134


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .+|+|+-...   ....++.+.+.|+++|.++.
T Consensus       235 ~~d~vld~~g---~~~~~~~~~~~l~~~g~~v~  264 (345)
T cd08286         235 GVDVVIEAVG---IPATFELCQELVAPGGHIAN  264 (345)
T ss_pred             CCCEEEECCC---CHHHHHHHHHhccCCcEEEE
Confidence            6998874322   12357778899999999885

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=86.89  E-value=0.52  Score=35.39  Aligned_cols=33  Identities=9%  Similarity=-0.035  Sum_probs=25.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCCh
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA  154 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~  154 (279)
                      +....+|||||+|.....|.+.   +.+=.|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence            3558999999999988777654   44668888754

; GO: 0008168 methyltransferase activity

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=86.84  E-value=7.3  Score=35.48  Aligned_cols=101  Identities=15%  Similarity=0.208  Sum_probs=58.9

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++.+||-.|+|. |..+..+++..+ ..++++++.+++..+.+++    .|...-+.....+..+.+....    ..
T Consensus       183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~  253 (365)
T cd08278         183 KPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT----GG  253 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh----CC
Confidence            345677888887643 555666777664 2369999999877766544    3332111111112222222221    24


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .+|+|+-.....   ..+..+.+.|+++|.++.-
T Consensus       254 ~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~  284 (365)
T cd08278         254 GVDYALDTTGVP---AVIEQAVDALAPRGTLALV  284 (365)
T ss_pred             CCcEEEECCCCc---HHHHHHHHHhccCCEEEEe
Confidence            689887543322   3467788889999988863

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=86.45  E-value=6.9  Score=32.66  Aligned_cols=97  Identities=18%  Similarity=0.202  Sum_probs=56.7

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      .....+++||-+|++ +|..+   ++.+.+.++|+.+|++|.+-..         +.+.|+|..+     +..+     .
T Consensus        40 ~~~~E~~~vli~G~YltG~~~---a~~Ls~~~~vtv~Di~p~~r~~---------lp~~v~Fr~~-----~~~~-----~   97 (254)
T COG4017          40 LEGEEFKEVLIFGVYLTGNYT---AQMLSKADKVTVVDIHPFMRGF---------LPNNVKFRNL-----LKFI-----R   97 (254)
T ss_pred             hcccCcceEEEEEeeehhHHH---HHHhcccceEEEecCCHHHHhc---------CCCCccHhhh-----cCCC-----C
Confidence            344567899999987 45444   4444446899999999865322         3344666533     2222     5


Q ss_pred             CcEEEEEEeCCccc-hHHHHHHHHccCCCCcEEEEeCCCCCCcccCcc
Q 023645          194 SSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQM  240 (279)
Q Consensus       194 ~~fDlI~id~~~~~-~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~  240 (279)
                      +.+|+|+--..... .+++    ++.+.|+ ++++.|..  |.+.|+.
T Consensus        98 G~~DlivDlTGlGG~~Pe~----L~~fnp~-vfiVEdP~--gn~~D~~  138 (254)
T COG4017          98 GEVDLIVDLTGLGGIEPEF----LAKFNPK-VFIVEDPK--GNVFDVD  138 (254)
T ss_pred             CceeEEEeccccCCCCHHH----HhccCCc-eEEEECCC--CCCCccc
Confidence            88999874333222 2233    3445664 66676654  4444443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=86.34  E-value=2.3  Score=38.03  Aligned_cols=97  Identities=11%  Similarity=0.043  Sum_probs=53.8

Q ss_pred             CEEEEEcCcc--CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE-cChhhHHHHHHhCCCCCcEE
Q 023645          121 QRCIEVGVYT--GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYD  197 (279)
Q Consensus       121 ~~VLEiG~G~--G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ++|+=+|+|.  |+++..|++.   +..|+.++.+++.++..++   ..|+    .+.. +...............+.||
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~~~~~~~~~~~~~~~~~D   72 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQ---AGGL----TLVEQGQASLYAIPAETADAAEPIH   72 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhh---cCCe----EEeeCCcceeeccCCCCcccccccC
Confidence            3788899873  3344445543   4579999998755544332   1122    1110 10000000000000135899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +||+-.-..+..+.++.+.+.+.++..++.
T Consensus        73 ~viv~vK~~~~~~al~~l~~~l~~~t~vv~  102 (305)
T PRK05708         73 RLLLACKAYDAEPAVASLAHRLAPGAELLL  102 (305)
T ss_pred             EEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence            999876655667788889999999886643

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=86.29  E-value=8.4  Score=32.84  Aligned_cols=80  Identities=15%  Similarity=0.160  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCC-------------------hhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERD-------------------ARSLEVAKKYYERAGVSHKVKIKHG  178 (279)
Q Consensus       119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s-------------------~~~~~~a~~~~~~~g~~~~v~~~~g  178 (279)
                      ...+|+=+|||. |......+...+ -++++.+|.+                   ....+.+++.+++.+..-+++.+..
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~   98 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE   98 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence            356899999973 333333222233 3588888543                   3345667777776654434565554


Q ss_pred             Chh-hHHHHHHhCCCCCcEEEEEEeCC
Q 023645          179 LAA-DSLKALILNGEASSYDFAFVDAE  204 (279)
Q Consensus       179 d~~-~~l~~~~~~~~~~~fDlI~id~~  204 (279)
                      ... +.+..+     -..+|+|+...+
T Consensus        99 ~i~~~~~~~~-----~~~~DvVi~~~d  120 (228)
T cd00757          99 RLDAENAEEL-----IAGYDLVLDCTD  120 (228)
T ss_pred             eeCHHHHHHH-----HhCCCEEEEcCC
Confidence            442 223333     256999987654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=86.28  E-value=13  Score=33.40  Aligned_cols=96  Identities=17%  Similarity=0.171  Sum_probs=53.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC--CCCEEEEEeCChhHH-HHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSL-EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~-~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..+++|+-+|+  |..+..+++.+.  ...+|+.++.+++.. +.+++    .|.    ...  +..+ +...     -.
T Consensus       176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----~g~----~~~--~~~~-~~~~-----l~  237 (311)
T cd05213         176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----LGG----NAV--PLDE-LLEL-----LN  237 (311)
T ss_pred             ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----cCC----eEE--eHHH-HHHH-----Hh
Confidence            46789999998  555555444432  135799999988654 33332    232    222  1212 2222     24


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ..|+||.-.+...+...+..+....+.++.+++|-..
T Consensus       238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence            5799998766555434444444433346788887553

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=86.15  E-value=25  Score=32.77  Aligned_cols=102  Identities=15%  Similarity=0.217  Sum_probs=59.4

Q ss_pred             EEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHH------------HHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645          122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~------------~~~~~g~~~~v~~~~gd~~~~l~~~~  188 (279)
                      +|--+|+|  |.++..+-.+.. +..|+|+|++++.++..++            .++++..+.|+++. .|..+..    
T Consensus         2 kI~viGtG--YVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~a~----   74 (414)
T COG1004           2 KITVIGTG--YVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEEAV----   74 (414)
T ss_pred             ceEEECCc--hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHHHH----
Confidence            45556664  444333322221 3689999999998877544            23332223344443 2222211    


Q ss_pred             hCCCCCcEEEEEEeCC----------ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          189 LNGEASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~----------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                           ...|++|+..+          ........+.+...++..-++|+......|.
T Consensus        75 -----~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt  126 (414)
T COG1004          75 -----KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGT  126 (414)
T ss_pred             -----hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCc
Confidence                 34578887532          2224556677778888888999988888776

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=85.89  E-value=1.7  Score=37.32  Aligned_cols=75  Identities=19%  Similarity=0.221  Sum_probs=41.4

Q ss_pred             ccCHHHHH--HHHHCC-CCCEEEEEeCChhHH--HHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeC
Q 023645          129 YTGYSSLA--IALVLP-ESGCLVACERDARSL--EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA  203 (279)
Q Consensus       129 G~G~~t~~--la~~~~-~~~~v~~iD~s~~~~--~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~  203 (279)
                      |.|-.|..  ++..+. .+.+|+-||-+|..-  ++.+...+...+.+++.+...+-...+....+..+...||+|++|-
T Consensus        12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDl   91 (231)
T PF07015_consen   12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLVDL   91 (231)
T ss_pred             CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeC
Confidence            55555544  444442 367999999998653  3322222222345566766655444444443322234699999984

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=85.87  E-value=1.6  Score=34.32  Aligned_cols=92  Identities=17%  Similarity=0.230  Sum_probs=52.8

Q ss_pred             EEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCC----C-cEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          124 IEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS----H-KVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       124 LEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~----~-~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      +=+|+  |..+..++..+. .+.+|+.+..++ ..+.    ++..|+.    . ...+............     ..++|
T Consensus         2 ~I~G~--GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~D   69 (151)
T PF02558_consen    2 LIIGA--GAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSAD-----AGPYD   69 (151)
T ss_dssp             EEEST--SHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHH-----HSTES
T ss_pred             EEECc--CHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhc-----cCCCc
Confidence            44555  556666655541 257899999887 4433    2322321    0 1111111111111011     47899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +||+-.-..+..+.++.+.+.+.++..+++
T Consensus        70 ~viv~vKa~~~~~~l~~l~~~~~~~t~iv~   99 (151)
T PF02558_consen   70 LVIVAVKAYQLEQALQSLKPYLDPNTTIVS   99 (151)
T ss_dssp             EEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred             EEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence            999987777778899999999999976664

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=85.75  E-value=19  Score=33.21  Aligned_cols=127  Identities=15%  Similarity=0.179  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChh-HHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      |....+=..++.......++=..+|++.....+...+.++.+|+..+..-. ....+....+..|..  ++++..+..+.
T Consensus        50 Pt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~--v~~~d~~~~e~  127 (377)
T TIGR01324        50 LTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVD--ITYYDPLIGED  127 (377)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcE--EEEECCCCHHH
Confidence            333333334444445556776777766666555544555678877665432 223333344444432  33332211123


Q ss_pred             HHHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCC-CcEEEEeCCCCCCccc
Q 023645          184 LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGKVA  237 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~-gG~lv~dd~~~~g~~~  237 (279)
                      +....    ..+..+|++..+  .......++.+.++.+. |..+++|++...|...
T Consensus       128 l~~~i----~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~  180 (377)
T TIGR01324       128 IATLI----QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLF  180 (377)
T ss_pred             HHHhc----CCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc
Confidence            33322    345678887654  23334556666666555 5677788887666543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=85.74  E-value=9.6  Score=33.95  Aligned_cols=101  Identities=21%  Similarity=0.216  Sum_probs=59.6

Q ss_pred             HHhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE-cChhhHHHHHHhCC
Q 023645          114 LVQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNG  191 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~~~~~~  191 (279)
                      .....++.+||=.|+| .|..+..+++... +.++++++.+++..+.+++    .|...-+.... .+..+.+...    
T Consensus       157 ~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~----  227 (338)
T PRK09422        157 VSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK----  227 (338)
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh----
Confidence            3445567788888853 2445555566532 5789999999988777743    34421111111 1112222222    


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                       .+.+|.++.+...   ...++.+.+.|+++|.++.
T Consensus       228 -~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~  259 (338)
T PRK09422        228 -TGGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVA  259 (338)
T ss_pred             -cCCCcEEEEeCCC---HHHHHHHHHhccCCCEEEE
Confidence             2358877766542   2457888899999999885

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=85.69  E-value=3.9  Score=36.18  Aligned_cols=34  Identities=12%  Similarity=0.208  Sum_probs=27.3

Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ..+|+||+-.........++.+.+.+.++.+++.
T Consensus        67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~  100 (305)
T PRK12921         67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP  100 (305)
T ss_pred             CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence            6789999887766778888888888888876653

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=85.46  E-value=3  Score=35.61  Aligned_cols=62  Identities=24%  Similarity=0.198  Sum_probs=47.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      .....-|.|||.|.|..+..+..+-  -.++..+|.++.++.-.+-..+.+.  .+..++++|+..
T Consensus        48 ~~~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR  109 (326)
T KOG0821|consen   48 NLTNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR  109 (326)
T ss_pred             ccccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence            3445689999999999999998763  3588999999988776665555333  368889998864

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=85.41  E-value=9.2  Score=34.86  Aligned_cols=96  Identities=15%  Similarity=0.148  Sum_probs=53.9

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .++++||-.|+| .|..+..+++..  +.++++++.+++....+   .++.|...  .+...+. +.+...     .+.+
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~~--vi~~~~~-~~~~~~-----~~~~  248 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGADS--FLVSTDP-EKMKAA-----IGTM  248 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCcE--EEcCCCH-HHHHhh-----cCCC
Confidence            456788888875 344555566665  46888888876543222   22334321  1111111 122222     2358


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |+||-...   ....++.+.+.|++||.++.-.
T Consensus       249 D~vid~~g---~~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        249 DYIIDTVS---AVHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             CEEEECCC---CHHHHHHHHHHhcCCcEEEEeC
Confidence            98884332   2235777889999999988643

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=85.32  E-value=0.73  Score=43.29  Aligned_cols=111  Identities=15%  Similarity=0.118  Sum_probs=61.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh-HHHHHHhCCCCCc
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD-SLKALILNGEASS  195 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~-~l~~~~~~~~~~~  195 (279)
                      ..+..+.|+|.|.|.-.-.+....+. .-.++.||.+..|......+.........+.+..--..+ .++..    ....
T Consensus       199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~----~~~~  274 (491)
T KOG2539|consen  199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPID----IKNG  274 (491)
T ss_pred             cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCC----cccc
Confidence            35667888888866533333332331 236899999999998887777641111112121101111 11111    1456


Q ss_pred             EEEEEEeCC------ccchHH-HHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          196 YDFAFVDAE------KRMYQE-YFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       196 fDlI~id~~------~~~~~~-~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      ||+|++.+.      ...... .-..+....++|+.+|+   ++.|.
T Consensus       275 yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi---Ie~g~  318 (491)
T KOG2539|consen  275 YDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI---IEKGT  318 (491)
T ss_pred             eeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE---EecCC
Confidence            999998653      112222 23344578899998887   56664

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=85.16  E-value=2.5  Score=37.06  Aligned_cols=40  Identities=20%  Similarity=0.139  Sum_probs=32.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC----CCCEEEEEeCChhHH
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDARSL  157 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~----~~~~v~~iD~s~~~~  157 (279)
                      .+...++|+|||.|..+.+++..++    ....++.||......
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~   60 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH   60 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence            3556899999999999999999884    246899999865433

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK08324 short chain dehydrogenase; Validated

Probab=85.14  E-value=8.7  Score=38.46  Aligned_cols=82  Identities=18%  Similarity=0.180  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--CC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~~  193 (279)
                      .+++||-.|+ +|..+..+++.+. .+.+|+.+|.+++..+.+.+.+...   .++.++.+|..+.  +....+.-  ..
T Consensus       421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4578888885 4556666665542 3579999999987766555544322   3578888887542  11111100  02


Q ss_pred             CcEEEEEEeCC
Q 023645          194 SSYDFAFVDAE  204 (279)
Q Consensus       194 ~~fDlI~id~~  204 (279)
                      +.+|+||..+.
T Consensus       497 g~iDvvI~~AG  507 (681)
T PRK08324        497 GGVDIVVSNAG  507 (681)
T ss_pred             CCCCEEEECCC
Confidence            47899987654

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=85.00  E-value=5  Score=35.30  Aligned_cols=85  Identities=15%  Similarity=0.087  Sum_probs=49.6

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      +|.=||+|  ..+..++..+. .+.+|+++|.+++..+.+.+.    |.   +.....+.    ..      -...|+||
T Consensus         2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~----~~------~~~aDlVi   62 (279)
T PRK07417          2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL----SL------LKDCDLVI   62 (279)
T ss_pred             eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH----hH------hcCCCEEE
Confidence            46667764  44444444432 145899999998876665432    22   11111111    11      24578888


Q ss_pred             EeCCccchHHHHHHHHccCCCCcEE
Q 023645          201 VDAEKRMYQEYFELLLQLIRVGGII  225 (279)
Q Consensus       201 id~~~~~~~~~l~~~~~~Lk~gG~l  225 (279)
                      +..+.....+.++.+.+.++++.++
T Consensus        63 lavp~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         63 LALPIGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             EcCCHHHHHHHHHHHHHhCCCCcEE
Confidence            8877666667777777777776433

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=84.96  E-value=5.1  Score=35.50  Aligned_cols=88  Identities=23%  Similarity=0.272  Sum_probs=51.1

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC---CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ++|+=+|.  |..+-++++.+..   ...+++.|.+....+.+.+    .|+.+  +.. .+. . ...      ....|
T Consensus         4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d--~~~-~~~-~-~~~------~~~aD   66 (279)
T COG0287           4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID--ELT-VAG-L-AEA------AAEAD   66 (279)
T ss_pred             cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc--ccc-cch-h-hhh------cccCC
Confidence            36777775  5555555554432   2456777777765544432    23322  110 011 0 111      35679


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGII  225 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~l  225 (279)
                      +||+..+.....++++++.+.|++|..+
T Consensus        67 ~VivavPi~~~~~~l~~l~~~l~~g~iv   94 (279)
T COG0287          67 LVIVAVPIEATEEVLKELAPHLKKGAIV   94 (279)
T ss_pred             EEEEeccHHHHHHHHHHhcccCCCCCEE
Confidence            9998888888888888888888886443

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=84.72  E-value=2.8  Score=36.55  Aligned_cols=75  Identities=19%  Similarity=0.306  Sum_probs=45.9

Q ss_pred             HHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHH
Q 023645          134 SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFE  213 (279)
Q Consensus       134 t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~  213 (279)
                      +..+.+..+ ..+|+++|.+++..+.|.+    .|..+.  .. .+    ...+      ..+|+|++..+.......++
T Consensus         2 A~aL~~~g~-~~~v~g~d~~~~~~~~a~~----~g~~~~--~~-~~----~~~~------~~~DlvvlavP~~~~~~~l~   63 (258)
T PF02153_consen    2 ALALRKAGP-DVEVYGYDRDPETLEAALE----LGIIDE--AS-TD----IEAV------EDADLVVLAVPVSAIEDVLE   63 (258)
T ss_dssp             HHHHHHTTT-TSEEEEE-SSHHHHHHHHH----TTSSSE--EE-SH----HHHG------GCCSEEEE-S-HHHHHHHHH
T ss_pred             hHHHHhCCC-CeEEEEEeCCHHHHHHHHH----CCCeee--cc-CC----HhHh------cCCCEEEEcCCHHHHHHHHH
Confidence            344454433 5799999999998766643    344331  11 11    1121      45699999888888888899


Q ss_pred             HHHccCCCCcEEE
Q 023645          214 LLLQLIRVGGIIV  226 (279)
Q Consensus       214 ~~~~~Lk~gG~lv  226 (279)
                      ++.+.+++|+++.
T Consensus        64 ~~~~~~~~~~iv~   76 (258)
T PF02153_consen   64 EIAPYLKPGAIVT   76 (258)
T ss_dssp             HHHCGS-TTSEEE
T ss_pred             HhhhhcCCCcEEE
Confidence            9988888875543

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=84.52  E-value=13  Score=33.80  Aligned_cols=102  Identities=18%  Similarity=0.271  Sum_probs=57.5

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc--ChhhHHHHHHhCC
Q 023645          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG  191 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~~~~~~  191 (279)
                      ....++.+||=.|+| .|..+..+++..+ ...+++++.+++..+.+++    .|...-+.....  +..+.+..+.   
T Consensus       179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~---  250 (365)
T cd05279         179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT---  250 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh---
Confidence            344567788888764 2334444566553 2258888988887766643    344321222222  2222222221   


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCC-CCcEEEEe
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIR-VGGIIVID  228 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk-~gG~lv~d  228 (279)
                       .+.+|+|+-....   ...+..+.+.|+ ++|.++.-
T Consensus       251 -~~~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~  284 (365)
T cd05279         251 -DGGVDYAFEVIGS---ADTLKQALDATRLGGGTSVVV  284 (365)
T ss_pred             -CCCCcEEEECCCC---HHHHHHHHHHhccCCCEEEEE
Confidence             2468988843221   245677888899 99998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=84.48  E-value=7.7  Score=37.31  Aligned_cols=104  Identities=11%  Similarity=0.099  Sum_probs=65.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCC---CCCEEEEEeCChhHHHHHHHHHHHhCCC-
Q 023645           97 RGSQMQVSPDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVS-  170 (279)
Q Consensus        97 ~~~~~~~~~~~~~~l~~l~~~~--~~~~VLEiG~G~G~~t~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~g~~-  170 (279)
                      +.+...+......++..++...  ++..|.|.-||+|.........+.   ....+++-+..+.+...++.++.-.+.. 
T Consensus       193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~  272 (501)
T TIGR00497       193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY  272 (501)
T ss_pred             cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc
Confidence            4445556666666666665533  446899999999998776544332   1246999999999999999987665553 


Q ss_pred             CcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC
Q 023645          171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  204 (279)
Q Consensus       171 ~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~  204 (279)
                      +......+|........    ...+||.|+.+++
T Consensus       273 ~t~~~~~~dtl~~~d~~----~~~~~D~v~~NpP  302 (501)
T TIGR00497       273 ANFNIINADTLTTKEWE----NENGFEVVVSNPP  302 (501)
T ss_pred             cccCcccCCcCCCcccc----ccccCCEEeecCC
Confidence            22344445543321111    1356888876653

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=84.46  E-value=10  Score=34.41  Aligned_cols=98  Identities=23%  Similarity=0.352  Sum_probs=55.6

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       118 ~~~~~VLEiG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      .++.+||-.|+| .|..+..+++..+  .+ +++++.+++..+.+++    .|...-+.....+..+.+....   ....
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~~~~  256 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT---GGRG  256 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh---CCCC
Confidence            456778776654 4455556666653  45 8999888877665543    3432211111122222222221   1356


Q ss_pred             EEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +|+|+-.....   ...+.+.+.|+++|.++.
T Consensus       257 ~d~vld~vg~~---~~~~~~~~~l~~~G~~v~  285 (367)
T cd08263         257 VDVVVEALGKP---ETFKLALDVVRDGGRAVV  285 (367)
T ss_pred             CCEEEEeCCCH---HHHHHHHHHHhcCCEEEE
Confidence            99988433222   356778889999998875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=84.30  E-value=2.9  Score=37.48  Aligned_cols=35  Identities=11%  Similarity=0.169  Sum_probs=26.9

Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ...+|+||+-....+..+.++.+.+++++++.++.
T Consensus        70 ~~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~  104 (313)
T PRK06249         70 MPPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL  104 (313)
T ss_pred             cCCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence            36799999876655666778888888998887654

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=84.14  E-value=4.1  Score=36.55  Aligned_cols=110  Identities=13%  Similarity=0.113  Sum_probs=66.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC-------------------CCCCEEEEEeCChhH--HHHHHHHHHHh----------C
Q 023645          120 AQRCIEVGVYTGYSSLAIALVL-------------------PESGCLVACERDARS--LEVAKKYYERA----------G  168 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~-------------------~~~~~v~~iD~s~~~--~~~a~~~~~~~----------g  168 (279)
                      ..+||-||-|.|.-...++..+                   ++...++.||+.+-.  +......+...          .
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            3699999999988777777665                   011489999997632  33333333222          0


Q ss_pred             C----C--CcEEEEEcChhhHHH-HHHhCCCCCcEEEEEE--------eCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          169 V----S--HKVKIKHGLAADSLK-ALILNGEASSYDFAFV--------DAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       169 ~----~--~~v~~~~gd~~~~l~-~~~~~~~~~~fDlI~i--------d~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +    .  -.++|.+.|++.... .+...-.....|+|.+        .........+|..+-..++||.++++-|
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD  242 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD  242 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence            0    1  137889999876422 1111000124566521        1125556788999999999999887744

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=84.14  E-value=2.9  Score=29.28  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=21.8

Q ss_pred             cCCCEEEEEcCccCH-HHHHHHHHCCCCCEEEEEeCC
Q 023645          118 LGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERD  153 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~-~t~~la~~~~~~~~v~~iD~s  153 (279)
                      ..|++||-|||-+|+ .+..++.++.-++..+++-..
T Consensus        37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE   73 (78)
T PF12242_consen   37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE   73 (78)
T ss_dssp             TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred             CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence            457899999999998 344466666556777776554

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=84.10  E-value=9.8  Score=32.80  Aligned_cols=94  Identities=21%  Similarity=0.257  Sum_probs=57.0

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ....++.+||-.|+|. |..+..+++..+  .+ |++++.+++..+.+++.    |..+.+.....   ...       .
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~---~~~-------~  156 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEAL----GPADPVAADTA---DEI-------G  156 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHc----CCCccccccch---hhh-------c
Confidence            3455678888888764 556666777664  45 99999988877665542    31111111100   011       1


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ...+|+||.....   ...+....+.|+++|.++.
T Consensus       157 ~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~  188 (277)
T cd08255         157 GRGADVVIEASGS---PSALETALRLLRDRGRVVL  188 (277)
T ss_pred             CCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence            3568988854332   2356677888999998875

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=83.97  E-value=17  Score=32.58  Aligned_cols=100  Identities=18%  Similarity=0.222  Sum_probs=56.0

Q ss_pred             hcCCCEEEEEcCc-cCHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       117 ~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..++.+||-.|+| .|..+..+++..  +.+ |++++.+++..+.+++    .|...-+.....+..+.+..+.   +..
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~---~~~  229 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT---DGE  229 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc---CCC
Confidence            3456677766654 344555566665  354 8888777766555443    3432212222223333332221   135


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .+|+|+-....   ...+..+.+.|+++|.++.-
T Consensus       230 ~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~  260 (340)
T TIGR00692       230 GVDVFLEMSGA---PKALEQGLQAVTPGGRVSLL  260 (340)
T ss_pred             CCCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence            68988764332   24567788889999988764

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PLN02256 arogenate dehydrogenase

Probab=83.91  E-value=13  Score=33.33  Aligned_cols=85  Identities=16%  Similarity=0.126  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ..++|.=||+  |..+..++..+.. +.+|+++|.++. .+.+    ...|.    .. ..+..+.+        ....|
T Consensus        35 ~~~kI~IIG~--G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a----~~~gv----~~-~~~~~e~~--------~~~aD   94 (304)
T PLN02256         35 RKLKIGIVGF--GNFGQFLAKTFVKQGHTVLATSRSDY-SDIA----AELGV----SF-FRDPDDFC--------EEHPD   94 (304)
T ss_pred             CCCEEEEEee--CHHHHHHHHHHHhCCCEEEEEECccH-HHHH----HHcCC----ee-eCCHHHHh--------hCCCC
Confidence            4457888887  5555555554422 358999999863 2222    22232    21 12222211        13468


Q ss_pred             EEEEeCCccchHHHHHHH-HccCCCCc
Q 023645          198 FAFVDAEKRMYQEYFELL-LQLIRVGG  223 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~-~~~Lk~gG  223 (279)
                      +|++..+.....+.++.+ ...+++|.
T Consensus        95 vVilavp~~~~~~vl~~l~~~~l~~~~  121 (304)
T PLN02256         95 VVLLCTSILSTEAVLRSLPLQRLKRST  121 (304)
T ss_pred             EEEEecCHHHHHHHHHhhhhhccCCCC
Confidence            888877766666777776 55677765

>PRK09028 cystathionine beta-lyase; Provisional

Probab=83.88  E-value=24  Score=32.88  Aligned_cols=117  Identities=13%  Similarity=0.146  Sum_probs=63.3

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCCh-hHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~-~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      .++....+..++-..+|+......+...+.++.+|+..+..- .....+...+...|.  .+.++..+..+.+....   
T Consensus        69 ~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~l~~~l---  143 (394)
T PRK09028         69 AIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEGIRELI---  143 (394)
T ss_pred             HHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHHHHHhc---
Confidence            333333444677666666655555444455577888877653 333444444554454  24444322223333332   


Q ss_pred             CCCcEEEEEEeCC--ccchHHHHHHHHccCCC-CcEEEEeCCCCCCc
Q 023645          192 EASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGK  235 (279)
Q Consensus       192 ~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~-gG~lv~dd~~~~g~  235 (279)
                       ..+-.+|++..+  .......++.+.++.+. |..+++|++...+.
T Consensus       144 -~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~  189 (394)
T PRK09028        144 -RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPI  189 (394)
T ss_pred             -CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence             244678888754  22334556666666655 56777788875553

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=83.69  E-value=14  Score=33.04  Aligned_cols=102  Identities=24%  Similarity=0.321  Sum_probs=58.6

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      .....++.+||-.|+|. |..+..+++..+  .+ +++++.+++..+.++    ..|...-+...... .+.+....   
T Consensus       154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~---  223 (343)
T cd08236         154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT---  223 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh---
Confidence            34445677888888754 566666777654  44 899988877665553    23432211211111 22222221   


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ....+|+++-....   ...+..+.+.|+++|.++.-
T Consensus       224 ~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  257 (343)
T cd08236         224 EGRGADLVIEAAGS---PATIEQALALARPGGKVVLV  257 (343)
T ss_pred             CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence            12459988854322   23567778899999988753

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=83.68  E-value=4.8  Score=39.22  Aligned_cols=95  Identities=13%  Similarity=0.065  Sum_probs=57.5

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      .+|+=+||  |..+..+++.+.+ +..++.+|.+++.++.+++    .    ....+.||+.+. ..+ ++-+-++.|.+
T Consensus       418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~----g~~~i~GD~~~~-~~L-~~a~i~~a~~v  485 (558)
T PRK10669        418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R----GIRAVLGNAANE-EIM-QLAHLDCARWL  485 (558)
T ss_pred             CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C----CCeEEEcCCCCH-HHH-HhcCccccCEE
Confidence            35665555  7788888887643 4589999999988777654    1    268899998752 111 11123578877


Q ss_pred             EEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          200 FVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ++..+.+.....+-...+...|...++.
T Consensus       486 iv~~~~~~~~~~iv~~~~~~~~~~~iia  513 (558)
T PRK10669        486 LLTIPNGYEAGEIVASAREKRPDIEIIA  513 (558)
T ss_pred             EEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence            7654332222223333445567766665

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=83.62  E-value=6.3  Score=34.90  Aligned_cols=78  Identities=13%  Similarity=0.175  Sum_probs=48.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY  196 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~f  196 (279)
                      +++||-.| |+|+.+..+++.+- .+.+|++++.++.............+...+++++.+|..+.  +...     -..+
T Consensus         4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-----~~~~   77 (322)
T PLN02662          4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-----VDGC   77 (322)
T ss_pred             CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-----HcCC
Confidence            46788887 57888888887753 34588888877653322222221122234689999998752  2333     2457


Q ss_pred             EEEEEeC
Q 023645          197 DFAFVDA  203 (279)
Q Consensus       197 DlI~id~  203 (279)
                      |.||..+
T Consensus        78 d~Vih~A   84 (322)
T PLN02662         78 EGVFHTA   84 (322)
T ss_pred             CEEEEeC
Confidence            9888654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=83.54  E-value=11  Score=33.50  Aligned_cols=95  Identities=14%  Similarity=0.105  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .+++|+=||+|. |......+..+  +++|+.+|.+++..+.++    ..|.    +++  +. +.+...     -..+|
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~----~~G~----~~~--~~-~~l~~~-----l~~aD  212 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARIT----EMGL----SPF--HL-SELAEE-----VGKID  212 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HcCC----eee--cH-HHHHHH-----hCCCC
Confidence            578999999863 22233333343  479999999976544432    2332    222  11 222222     25789


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      +||...+..   -.-+.....++||++ ++|-...+|.
T Consensus       213 iVI~t~p~~---~i~~~~l~~~~~g~v-IIDla~~pgg  246 (296)
T PRK08306        213 IIFNTIPAL---VLTKEVLSKMPPEAL-IIDLASKPGG  246 (296)
T ss_pred             EEEECCChh---hhhHHHHHcCCCCcE-EEEEccCCCC
Confidence            999764422   123456677888765 4444444443

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=83.50  E-value=14  Score=32.75  Aligned_cols=97  Identities=12%  Similarity=0.094  Sum_probs=53.4

Q ss_pred             CCCEEEEE--cC-ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          119 GAQRCIEV--GV-YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       119 ~~~~VLEi--G~-G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      .+.++|=+  |+ +.|..+..+++..  +.++++++.+++..+.+++    .|...-+.....+..+.+....   ....
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~---~~~~  212 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI---AKLN  212 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh---CCCC
Confidence            34455544  33 2455556667765  4689999999887777655    3443212222223322222221   1246


Q ss_pred             EEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +|++|-.....    ........|++||.++.-
T Consensus       213 ~d~vid~~g~~----~~~~~~~~l~~~G~~v~~  241 (324)
T cd08291         213 ATIFFDAVGGG----LTGQILLAMPYGSTLYVY  241 (324)
T ss_pred             CcEEEECCCcH----HHHHHHHhhCCCCEEEEE
Confidence            89888433322    234457788999988763

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=83.42  E-value=2.5  Score=34.21  Aligned_cols=95  Identities=15%  Similarity=0.190  Sum_probs=52.1

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcE-EEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV-KIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v-~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      +++++-+|+..=..-. +|-..+ ..+|.++|.++--++   +.     ..+++ ++...|+.......     .++||+
T Consensus         2 ~~~g~V~GS~~PwvEv-~aL~~G-A~~iltveyn~L~i~---~~-----~~dr~ssi~p~df~~~~~~y-----~~~fD~   66 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEV-MALQHG-AAKILTVEYNKLEIQ---EE-----FRDRLSSILPVDFAKNWQKY-----AGSFDF   66 (177)
T ss_pred             CceEEEEecCCchhhH-HHHHcC-CceEEEEeecccccC---cc-----cccccccccHHHHHHHHHHh-----hccchh
Confidence            4678888887443333 333333 468999998762211   10     11222 22222332222222     578998


Q ss_pred             EEEeCC--------------ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          199 AFVDAE--------------KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       199 I~id~~--------------~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +.+-+.              .......+.++..+|||||.+++.-
T Consensus        67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v  111 (177)
T PF03269_consen   67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV  111 (177)
T ss_pred             hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence            754321              2223456777789999999999853

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=83.34  E-value=1.8  Score=35.08  Aligned_cols=44  Identities=16%  Similarity=0.129  Sum_probs=31.6

Q ss_pred             hcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHH
Q 023645          117 ILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (279)
Q Consensus       117 ~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (279)
                      ..+|.+|+=+|.|. |..+..++..++  .+++.+|..++..+..+.
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~   61 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLES   61 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhc
Confidence            35678999999984 667777888875  899999999876655443

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=83.29  E-value=14  Score=32.43  Aligned_cols=100  Identities=17%  Similarity=0.228  Sum_probs=56.2

Q ss_pred             hhcCCCEEEEEcCc--cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++.+||-.|.+  .|.....++...  +.+++.++.+++..+.++.    .+....+.....+..+.+....   ..
T Consensus       163 ~~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~  233 (342)
T cd08266         163 RLRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELT---GK  233 (342)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHh---CC
Confidence            34566788888875  444555555554  4789999988876655532    2332112111111212222211   13


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..+|+++.....    ..++.+.+.++++|.++.-
T Consensus       234 ~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~  264 (342)
T cd08266         234 RGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC  264 (342)
T ss_pred             CCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence            468988865442    2456677888999988753

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=83.22  E-value=2.4  Score=36.90  Aligned_cols=102  Identities=20%  Similarity=0.194  Sum_probs=67.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCC-----------CCEEEEEeCChhHHHH-------------HHHHHH----------
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPE-----------SGCLVACERDARSLEV-------------AKKYYE----------  165 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~-----------~~~v~~iD~s~~~~~~-------------a~~~~~----------  165 (279)
                      .-.|+|+|-|+|...+...+.++.           .-++++++.+|-....             +.+...          
T Consensus        59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~  138 (252)
T COG4121          59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA  138 (252)
T ss_pred             ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence            347999999999988777665532           1257888877643211             111111          


Q ss_pred             ---HhCCCCcEEEEEcChhhHHHHHHhCCCCC---cEEEEEEeCC------ccchHHHHHHHHccCCCCcEEEE
Q 023645          166 ---RAGVSHKVKIKHGLAADSLKALILNGEAS---SYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       166 ---~~g~~~~v~~~~gd~~~~l~~~~~~~~~~---~fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                         ..|. -...+..||+.+.++..     +.   ++|+.|.|+-      .-...+.+..+.+..++||.+.-
T Consensus       139 r~~~~g~-~~l~l~~gd~~~~~p~~-----~~~~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t  206 (252)
T COG4121         139 AAVRHGL-LLLGLVIGDAGDGIPPV-----PRRRPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLAT  206 (252)
T ss_pred             Hhhhcch-heeeeeeeehhhcCCcc-----cccccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceec
Confidence               1121 23677888888776655     33   7999999863      11356788899999999999875

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.22  E-value=12  Score=32.92  Aligned_cols=95  Identities=13%  Similarity=0.149  Sum_probs=53.1

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--------CCC---------CcEEEEEcChhhH
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--------GVS---------HKVKIKHGLAADS  183 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--------g~~---------~~v~~~~gd~~~~  183 (279)
                      ++|.-||+|.-..++...-+.. +.+|+.+|.+++.++.+++.++..        .+.         .++++. .|..+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence            4688888864333333222212 468999999999888877654211        110         123322 222111


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCcc--chHHHHHHHHccCCCCcEEE
Q 023645          184 LKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~--~~~~~l~~~~~~Lk~gG~lv  226 (279)
                               -..-|+|+...+..  .....++.+.+.++++.+|+
T Consensus        82 ---------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~  117 (287)
T PRK08293         82 ---------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA  117 (287)
T ss_pred             ---------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence                     24568888765522  34566777777777776554

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=83.20  E-value=13  Score=32.62  Aligned_cols=93  Identities=13%  Similarity=0.141  Sum_probs=53.3

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCC---CcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~---~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      +|.=||+|  ..+..++..+. .+.+|+.++.+++..+..++    .|+.   ...... ....+....      ...+|
T Consensus         2 ~I~IiG~G--~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~-~~~~~~~~~------~~~~d   68 (304)
T PRK06522          2 KIAILGAG--AIGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITVP-VLAADDPAE------LGPQD   68 (304)
T ss_pred             EEEEECCC--HHHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceeec-ccCCCChhH------cCCCC
Confidence            57788885  44444444332 14589999987766544433    2331   111100 001111111      26789


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +||+-.........++.+.+.+.++..++.
T Consensus        69 ~vila~k~~~~~~~~~~l~~~l~~~~~iv~   98 (304)
T PRK06522         69 LVILAVKAYQLPAALPSLAPLLGPDTPVLF   98 (304)
T ss_pred             EEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence            999887766778888888888888765553

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=82.71  E-value=4.9  Score=35.09  Aligned_cols=90  Identities=19%  Similarity=0.275  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCccC----HHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          119 GAQRCIEVGVYTG----YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       119 ~~~~VLEiG~G~G----~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..++||-+|.|+-    --+..+-+.+|.++.++-.|+.+-             .++--..+.+|.....+       +.
T Consensus        61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~-------------vSDa~~~~~~Dc~t~~~-------~~  120 (299)
T PF06460_consen   61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY-------------VSDADQSIVGDCRTYMP-------PD  120 (299)
T ss_dssp             TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS---------------B-SSSEEEES-GGGEEE-------SS
T ss_pred             cCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh-------------ccccCCceeccccccCC-------CC
Confidence            4579999999852    245667788998888999998752             12223566788765543       68


Q ss_pred             cEEEEEEeCC-------------ccchHHH-HHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAE-------------KRMYQEY-FELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~-------------~~~~~~~-l~~~~~~Lk~gG~lv~d  228 (279)
                      +||+||.|.-             ++..-.+ ...+...|+-||-+++.
T Consensus       121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK  168 (299)
T PF06460_consen  121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK  168 (299)
T ss_dssp             -EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence            9999999843             1222222 34445789999999874

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=82.63  E-value=7.7  Score=36.83  Aligned_cols=92  Identities=14%  Similarity=0.163  Sum_probs=55.0

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCC-CCEEE------EEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLV------ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~------~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~  188 (279)
                      ....+++|+-||||  ..+...+..+.. +.+|+      +||.+....+.|.+    .|+.      .++..+.+    
T Consensus        32 ~~LkgKtIaIIGyG--SqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~----dGF~------v~~~~Ea~----   95 (487)
T PRK05225         32 SYLKGKKIVIVGCG--AQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE----NGFK------VGTYEELI----   95 (487)
T ss_pred             HHhCCCEEEEEccC--HHHHHHhCCCccccceeEEeccccccccccchHHHHHh----cCCc------cCCHHHHH----
Confidence            34567899999995  555544443332 23444      44444444443332    3441      23433332    


Q ss_pred             hCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                           ..-|+|++-.+......+.+.+.+.||||..|.+.
T Consensus        96 -----~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fs  130 (487)
T PRK05225         96 -----PQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYS  130 (487)
T ss_pred             -----HhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEec
Confidence                 46789887665444556668999999999999884

>PRK07582 cystathionine gamma-lyase; Validated

Probab=82.46  E-value=18  Score=33.16  Aligned_cols=113  Identities=16%  Similarity=0.154  Sum_probs=57.7

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChh-HHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~  188 (279)
                      +-..++... +..++-+++|+......+...+.++.+|+..+.... ....++..++..|.  ++.++  +..+..... 
T Consensus        56 Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v--~~~~~~~~~-  129 (366)
T PRK07582         56 LEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREA--PTAGMAEAA-  129 (366)
T ss_pred             HHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEE--CCCChHHHh-
Confidence            333333333 345666788776655555444555667888765543 33444444444443  23333  322211111 


Q ss_pred             hCCCCCcEEEEEEeCCc--cchHHHHHHHHccCC-CCcEEEEeCCCC
Q 023645          189 LNGEASSYDFAFVDAEK--RMYQEYFELLLQLIR-VGGIIVIDNVLW  232 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~~--~~~~~~l~~~~~~Lk-~gG~lv~dd~~~  232 (279)
                          ....++|++..+.  ......++.+.++.+ .|..+++|++..
T Consensus       130 ----~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~  172 (366)
T PRK07582        130 ----LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTA  172 (366)
T ss_pred             ----ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCC
Confidence                2456888876441  111223455555444 467788888753

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=82.29  E-value=5.4  Score=39.33  Aligned_cols=95  Identities=19%  Similarity=0.075  Sum_probs=57.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      .+|+=  ||.|..+..+++.+. .+.+++.+|.+++.++.+++    .|    ..++.||+.+. ..+..- +-++.|.+
T Consensus       401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~-~~L~~a-gi~~A~~v  468 (601)
T PRK03659        401 PQVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQL-ELLRAA-GAEKAEAI  468 (601)
T ss_pred             CCEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCH-HHHHhc-CCccCCEE
Confidence            35555  455778887777653 24689999999998877654    23    57888998652 112111 13577887


Q ss_pred             EEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          200 FVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ++..+........-...+.+.|...++.
T Consensus       469 v~~~~d~~~n~~i~~~~r~~~p~~~Iia  496 (601)
T PRK03659        469 VITCNEPEDTMKIVELCQQHFPHLHILA  496 (601)
T ss_pred             EEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence            7654433322223333455667766665

>PRK08655 prephenate dehydrogenase; Provisional

Probab=82.26  E-value=7.4  Score=36.77  Aligned_cols=85  Identities=16%  Similarity=0.173  Sum_probs=47.8

Q ss_pred             EEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      +|.=|| |.|..+..++..+.. +.+|+++|.+++....   .....|.    .+ ..+..+.         -...|+||
T Consensus         2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~---~a~~~gv----~~-~~~~~e~---------~~~aDvVI   63 (437)
T PRK08655          2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE---VAKELGV----EY-ANDNIDA---------AKDADIVI   63 (437)
T ss_pred             EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHH---HHHHcCC----ee-ccCHHHH---------hccCCEEE
Confidence            566676 346666666655432 3589999998765321   1222232    11 1122111         14568888


Q ss_pred             EeCCccchHHHHHHHHccCCCCcE
Q 023645          201 VDAEKRMYQEYFELLLQLIRVGGI  224 (279)
Q Consensus       201 id~~~~~~~~~l~~~~~~Lk~gG~  224 (279)
                      +..+.......++.+.+.+++|.+
T Consensus        64 lavp~~~~~~vl~~l~~~l~~~~i   87 (437)
T PRK08655         64 ISVPINVTEDVIKEVAPHVKEGSL   87 (437)
T ss_pred             EecCHHHHHHHHHHHHhhCCCCCE
Confidence            777666666777777777777653

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=82.22  E-value=17  Score=31.85  Aligned_cols=98  Identities=16%  Similarity=0.179  Sum_probs=62.0

Q ss_pred             hcCCCEEEEEc--CccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          117 ILGAQRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       117 ~~~~~~VLEiG--~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..++.+||--.  -|.|.....|++..  +.++++.-...+..+.|++    +|...-|.....|..+....+   ....
T Consensus       144 vkpGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~ake----nG~~h~I~y~~eD~v~~V~ki---TngK  214 (336)
T KOG1197|consen  144 VKPGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKE----NGAEHPIDYSTEDYVDEVKKI---TNGK  214 (336)
T ss_pred             CCCCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHh----cCCcceeeccchhHHHHHHhc---cCCC
Confidence            34566666543  24455556666665  4788888887777777666    455555666666665544333   2235


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ..|.++-....+    .++.-+..||++|.+|-
T Consensus       215 GVd~vyDsvG~d----t~~~sl~~Lk~~G~mVS  243 (336)
T KOG1197|consen  215 GVDAVYDSVGKD----TFAKSLAALKPMGKMVS  243 (336)
T ss_pred             Cceeeeccccch----hhHHHHHHhccCceEEE
Confidence            688887444443    36667889999999885

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=82.17  E-value=11  Score=33.94  Aligned_cols=95  Identities=14%  Similarity=0.190  Sum_probs=54.9

Q ss_pred             EEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHH---HHH---hCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKY---YER---AGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~---~~~---~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      +|.=||+  |.++..++..+.. +.+|+.++.+++.++..++.   ...   ..+...+.+. .|..+.   .     .+
T Consensus         2 kI~IiGa--Ga~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~---~-----~~   70 (326)
T PRK14620          2 KISILGA--GSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV---L-----SD   70 (326)
T ss_pred             EEEEECc--CHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH---H-----hC
Confidence            4667787  4555555544322 35789999888766555442   110   0011112222 222211   1     25


Q ss_pred             cEEEEEEeCCccchHHHHHHHHc-cCCCCcEEEE
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQ-LIRVGGIIVI  227 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~-~Lk~gG~lv~  227 (279)
                      .+|+||+-.......+.++.+.+ .++++..++.
T Consensus        71 ~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~  104 (326)
T PRK14620         71 NATCIILAVPTQQLRTICQQLQDCHLKKNTPILI  104 (326)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence            78999998887778888888887 8888765443

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=82.16  E-value=18  Score=32.94  Aligned_cols=80  Identities=16%  Similarity=0.187  Sum_probs=44.8

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCCh---------------------hHHHHHHHHHHHhCCCCcEEEE
Q 023645          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA---------------------RSLEVAKKYYERAGVSHKVKIK  176 (279)
Q Consensus       119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~---------------------~~~~~a~~~~~~~g~~~~v~~~  176 (279)
                      ...+|+-+|||. |......+...+ -++++.+|.+.                     ...+.+++.+++.+..-+++.+
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~  101 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI  101 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            456899999973 333322222222 36899999863                     2334556666655443345555


Q ss_pred             EcChhh-HHHHHHhCCCCCcEEEEEEeCC
Q 023645          177 HGLAAD-SLKALILNGEASSYDFAFVDAE  204 (279)
Q Consensus       177 ~gd~~~-~l~~~~~~~~~~~fDlI~id~~  204 (279)
                      ..+... ....+     -..+|+|+.-.+
T Consensus       102 ~~~~~~~~~~~~-----~~~~DlVid~~D  125 (339)
T PRK07688        102 VQDVTAEELEEL-----VTGVDLIIDATD  125 (339)
T ss_pred             eccCCHHHHHHH-----HcCCCEEEEcCC
Confidence            555432 22333     256899886544

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=82.10  E-value=12  Score=33.42  Aligned_cols=97  Identities=18%  Similarity=0.184  Sum_probs=56.6

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ....+.+||=.|+| .|..+..+++..  +.+++.++.+++..+.+++    .|...-+.....+..+.+...      .
T Consensus       160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~------~  227 (333)
T cd08296         160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQEL------G  227 (333)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhc------C
Confidence            44567789888853 244445556665  4689999998877666643    343211122222222222221      3


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .+|+++....   ....++...+.|+++|.++.
T Consensus       228 ~~d~vi~~~g---~~~~~~~~~~~l~~~G~~v~  257 (333)
T cd08296         228 GAKLILATAP---NAKAISALVGGLAPRGKLLI  257 (333)
T ss_pred             CCCEEEECCC---chHHHHHHHHHcccCCEEEE
Confidence            5888874321   12457778889999999885

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=82.00  E-value=3.8  Score=38.01  Aligned_cols=50  Identities=14%  Similarity=0.143  Sum_probs=36.4

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHH
Q 023645          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAK  161 (279)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~  161 (279)
                      +.-...+++.+..+||-|.+| |..++.++..-|  .+|++||+||......+
T Consensus        25 ~vD~~aL~i~~~d~vl~ItSa-G~N~L~yL~~~P--~~I~aVDlNp~Q~aLle   74 (380)
T PF11899_consen   25 RVDMEALNIGPDDRVLTITSA-GCNALDYLLAGP--KRIHAVDLNPAQNALLE   74 (380)
T ss_pred             HHHHHHhCCCCCCeEEEEccC-CchHHHHHhcCC--ceEEEEeCCHHHHHHHH
Confidence            344566677788899999765 556665555544  69999999998876654

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=81.95  E-value=22  Score=30.98  Aligned_cols=97  Identities=22%  Similarity=0.315  Sum_probs=59.5

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ....+.+||-.|+  +.|..+..+++..  +.+|+++..+++..+.++    ..|... +-....+..+.+..+     .
T Consensus       139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~-~~~~~~~~~~~i~~~-----~  206 (320)
T cd08243         139 GLQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLK----ELGADE-VVIDDGAIAEQLRAA-----P  206 (320)
T ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCcE-EEecCccHHHHHHHh-----C
Confidence            3456778988885  4666777777775  478999988887665553    234421 211122222222222     2


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..+|+++-... .   ..++.+.+.|+++|.++.-
T Consensus       207 ~~~d~vl~~~~-~---~~~~~~~~~l~~~g~~v~~  237 (320)
T cd08243         207 GGFDKVLELVG-T---ATLKDSLRHLRPGGIVCMT  237 (320)
T ss_pred             CCceEEEECCC-h---HHHHHHHHHhccCCEEEEE
Confidence            56999884332 1   3567778999999998863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=81.92  E-value=19  Score=31.13  Aligned_cols=100  Identities=16%  Similarity=0.154  Sum_probs=58.7

Q ss_pred             HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ....++.+||=.|+  +.|..+..+++..  +.++++++.+++..+.+++    .|..   .++..+-.+....+.....
T Consensus       132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~  202 (320)
T cd05286         132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREITG  202 (320)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHcC
Confidence            34456788998884  4566667777776  4789999888877665533    3432   1222211112112211111


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ...+|+++-....    .....+.+.|+++|.++.
T Consensus       203 ~~~~d~vl~~~~~----~~~~~~~~~l~~~g~~v~  233 (320)
T cd05286         203 GRGVDVVYDGVGK----DTFEGSLDSLRPRGTLVS  233 (320)
T ss_pred             CCCeeEEEECCCc----HhHHHHHHhhccCcEEEE
Confidence            3469999843322    345667888999998874

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PRK08507 prephenate dehydrogenase; Validated

Probab=81.82  E-value=9.8  Score=33.31  Aligned_cols=85  Identities=20%  Similarity=0.234  Sum_probs=51.5

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCC---CEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      +|.=||+  |..+..++..+...   .+|+++|.+++..+.++    ..|...   . ..+.    ...     .. .|+
T Consensus         2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~----~~g~~~---~-~~~~----~~~-----~~-aD~   61 (275)
T PRK08507          2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL----ELGLVD---E-IVSF----EEL-----KK-CDV   61 (275)
T ss_pred             EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH----HCCCCc---c-cCCH----HHH-----hc-CCE
Confidence            4666776  55555555544322   37999999988765543    233321   1 1121    122     23 799


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ||+..+.....+.+..+.+ +++|.+ ++|
T Consensus        62 Vilavp~~~~~~~~~~l~~-l~~~~i-v~d   89 (275)
T PRK08507         62 IFLAIPVDAIIEILPKLLD-IKENTT-IID   89 (275)
T ss_pred             EEEeCcHHHHHHHHHHHhc-cCCCCE-EEE
Confidence            9998887777788888888 887764 444

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.81  E-value=24  Score=30.22  Aligned_cols=81  Identities=10%  Similarity=0.030  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHhC
Q 023645          119 GAQRCIEVGVYT-GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILN  190 (279)
Q Consensus       119 ~~~~VLEiG~G~-G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~~  190 (279)
                      .++.+|-.|.++ +.++..+++.+. .+.+|+.++.+++..+.+++..+..+   .+.++.+|..+.      .....+.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~   85 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEE   85 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHH
Confidence            467899999876 367777776653 35688888887654333343333222   245667776532      1222111


Q ss_pred             CCCCcEEEEEEeCC
Q 023645          191 GEASSYDFAFVDAE  204 (279)
Q Consensus       191 ~~~~~fDlI~id~~  204 (279)
                        .+..|+++.++.
T Consensus        86 --~g~ld~lv~nAg   97 (258)
T PRK07533         86 --WGRLDFLLHSIA   97 (258)
T ss_pred             --cCCCCEEEEcCc
Confidence              257899887653

>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component

Probab=81.78  E-value=10  Score=27.73  Aligned_cols=66  Identities=17%  Similarity=0.145  Sum_probs=40.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      ++|| +-||+|.+|-.++..+                   ++.+++.|++  +++...+..+....      ...+|+|+
T Consensus         4 ~~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi~--~~v~a~~~~~~~~~------~~~~Dvil   55 (95)
T TIGR00853         4 TNIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGVP--VKIAAGSYGAAGEK------LDDADVVL   55 (95)
T ss_pred             cEEE-EECCCchhHHHHHHHH-------------------HHHHHHCCCc--EEEEEecHHHHHhh------cCCCCEEE
Confidence            4666 5588888776666442                   4555666764  78887777654332      35689999


Q ss_pred             EeCCccchHHHHHH
Q 023645          201 VDAEKRMYQEYFEL  214 (279)
Q Consensus       201 id~~~~~~~~~l~~  214 (279)
                      +.+........++.
T Consensus        56 l~pqi~~~~~~i~~   69 (95)
T TIGR00853        56 LAPQVAYMLPDLKK   69 (95)
T ss_pred             ECchHHHHHHHHHH
Confidence            87654443333333

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=81.73  E-value=9.1  Score=30.67  Aligned_cols=117  Identities=18%  Similarity=0.212  Sum_probs=65.7

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      +|-=||+  |..+..+++.+. .+..|+..|.+++..+...+    .+    ++.. .+..+..         ...|+||
T Consensus         3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----~g----~~~~-~s~~e~~---------~~~dvvi   62 (163)
T PF03446_consen    3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE----AG----AEVA-DSPAEAA---------EQADVVI   62 (163)
T ss_dssp             EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH----TT----EEEE-SSHHHHH---------HHBSEEE
T ss_pred             EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH----hh----hhhh-hhhhhHh---------hcccceE
Confidence            4556666  667777766643 35689999999866544332    22    2322 3333332         3459998


Q ss_pred             EeCC-ccchHHHHHH--HHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCc
Q 023645          201 VDAE-KRMYQEYFEL--LLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDG  272 (279)
Q Consensus       201 id~~-~~~~~~~l~~--~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (279)
                      +-.. .....+.+..  +.+.|++|.+++-.....+..             .+++.+.+. ..++..+-.|+..|
T Consensus        63 ~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~-------------~~~~~~~~~-~~g~~~vdapV~Gg  123 (163)
T PF03446_consen   63 LCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPET-------------SRELAERLA-AKGVRYVDAPVSGG  123 (163)
T ss_dssp             E-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHH-------------HHHHHHHHH-HTTEEEEEEEEESH
T ss_pred             eecccchhhhhhhhhhHHhhccccceEEEecCCcchhh-------------hhhhhhhhh-hccceeeeeeeecc
Confidence            7654 4556677777  888888887777544433222             344555553 45577788887443

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=81.61  E-value=1.3  Score=38.92  Aligned_cols=38  Identities=13%  Similarity=0.137  Sum_probs=30.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHH
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSL  157 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~  157 (279)
                      ..+++|||+|||.|.-.+......  ...+...|.+.+.+
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL  152 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence            467899999999999888877653  26788888887766

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=81.25  E-value=21  Score=30.60  Aligned_cols=81  Identities=16%  Similarity=0.132  Sum_probs=44.7

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCcEEEEEc
Q 023645          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG  178 (279)
Q Consensus       119 ~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~g  178 (279)
                      ...+|+-+||| .|......+-..+ -++++.+|.+.                   ...+.+++.+...+..-+++.+..
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~   88 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE   88 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence            35589999996 4444433332333 36899888653                   234555666666554434555544


Q ss_pred             Chh-hHHHHHHhCCCCCcEEEEEEeCC
Q 023645          179 LAA-DSLKALILNGEASSYDFAFVDAE  204 (279)
Q Consensus       179 d~~-~~l~~~~~~~~~~~fDlI~id~~  204 (279)
                      ... +....+.    ...||+|+.-.+
T Consensus        89 ~i~~~~~~~l~----~~~~D~VvdaiD  111 (231)
T cd00755          89 FLTPDNSEDLL----GGDPDFVVDAID  111 (231)
T ss_pred             ecCHhHHHHHh----cCCCCEEEEcCC
Confidence            332 1223332    346999886443

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=81.13  E-value=23  Score=30.71  Aligned_cols=100  Identities=18%  Similarity=0.335  Sum_probs=57.8

Q ss_pred             HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ....++.+|+-.||  +.|..+..+++..  +.+++.++.+++..+.+++    .|...-+.....+..+.+....   .
T Consensus       135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~---~  205 (323)
T cd08241         135 ARLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALT---G  205 (323)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHc---C
Confidence            33456789999997  3455556666654  4689999998877666543    3432212222222222222221   1


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ...+|+++.....    ..+..+.+.++++|.++.
T Consensus       206 ~~~~d~v~~~~g~----~~~~~~~~~~~~~g~~v~  236 (323)
T cd08241         206 GRGVDVVYDPVGG----DVFEASLRSLAWGGRLLV  236 (323)
T ss_pred             CCCcEEEEECccH----HHHHHHHHhhccCCEEEE
Confidence            3469988754332    245567788899998875

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=81.13  E-value=48  Score=31.00  Aligned_cols=118  Identities=16%  Similarity=0.193  Sum_probs=71.6

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeC-ChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER-DARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~-s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      .+.....+..++-.-+|...++..+...+|.+.++++.+- --.-....++...+.|..  .+++..+-.+.+....   
T Consensus        85 ~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie--~~~vd~~~~~~~~~~i---  159 (409)
T KOG0053|consen   85 GIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGE--GDFVDVDDLKKILKAI---  159 (409)
T ss_pred             HHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCce--eeeechhhHHHHHHhh---
Confidence            4444555667888888888888888777887888888762 234456666666666653  5666554444444332   


Q ss_pred             CCCcEEEEEEeCCcc--chHHHHHHHHccC-CCCcEEEEeCCCCCCcc
Q 023645          192 EASSYDFAFVDAEKR--MYQEYFELLLQLI-RVGGIIVIDNVLWHGKV  236 (279)
Q Consensus       192 ~~~~fDlI~id~~~~--~~~~~l~~~~~~L-k~gG~lv~dd~~~~g~~  236 (279)
                       ....++||+-.+..  .....++.+.++- ++|-.+|+||.+-+.-.
T Consensus       160 -~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~  206 (409)
T KOG0053|consen  160 -KENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN  206 (409)
T ss_pred             -ccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc
Confidence             34689999875411  1112233333332 56667788888765533

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=81.02  E-value=21  Score=31.89  Aligned_cols=100  Identities=19%  Similarity=0.189  Sum_probs=57.8

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE-cChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~~~~~~~  192 (279)
                      ....++.+||-.|+| .|..+..+++..  +.++++++.+++..+.+++    .|...-+.... .+..+.+..+.    
T Consensus       161 ~~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~----  230 (345)
T cd08260         161 ARVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDLT----  230 (345)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHHh----
Confidence            344566788888853 344445566654  4789999998887766643    35422122222 22222222221    


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .+.+|++|.....   ...+....+.|+++|.++.
T Consensus       231 ~~~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~  262 (345)
T cd08260         231 GGGAHVSVDALGI---PETCRNSVASLRKRGRHVQ  262 (345)
T ss_pred             CCCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEE
Confidence            2379988843222   2356677888999998875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=80.72  E-value=14  Score=34.64  Aligned_cols=95  Identities=15%  Similarity=0.096  Sum_probs=56.9

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      +|+-+|+  |..+..+++.+. .+..|+.+|.+++.++.+++.   .    .+.++.||+.+.. .+... +-..+|.|+
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~----~~~~~~gd~~~~~-~l~~~-~~~~a~~vi   70 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L----DVRTVVGNGSSPD-VLREA-GAEDADLLI   70 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c----CEEEEEeCCCCHH-HHHHc-CCCcCCEEE
Confidence            5677766  888888888664 256899999999876655431   1    2778888886421 11111 135788888


Q ss_pred             EeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          201 VDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       201 id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +...............+.+.|.-.+++
T Consensus        71 ~~~~~~~~n~~~~~~~r~~~~~~~ii~   97 (453)
T PRK09496         71 AVTDSDETNMVACQIAKSLFGAPTTIA   97 (453)
T ss_pred             EecCChHHHHHHHHHHHHhcCCCeEEE
Confidence            765433333334444455534433333

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=80.68  E-value=9.9  Score=33.80  Aligned_cols=79  Identities=18%  Similarity=0.213  Sum_probs=48.7

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY  196 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~f  196 (279)
                      +++||-.| |+|..+..+++.+- .+.+|+++..++.............+...+++++.+|..+.  +....     ..+
T Consensus         5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-----~~~   78 (325)
T PLN02989          5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI-----DGC   78 (325)
T ss_pred             CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH-----cCC
Confidence            46888888 67888888887653 35688877776654333322222223334688999998753  23332     357


Q ss_pred             EEEEEeCC
Q 023645          197 DFAFVDAE  204 (279)
Q Consensus       197 DlI~id~~  204 (279)
                      |.||..+.
T Consensus        79 d~vih~A~   86 (325)
T PLN02989         79 ETVFHTAS   86 (325)
T ss_pred             CEEEEeCC
Confidence            88886553

>PLN02494 adenosylhomocysteinase

Probab=80.60  E-value=11  Score=35.91  Aligned_cols=88  Identities=13%  Similarity=0.077  Sum_probs=52.6

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..+++|+-+|+|. |......++.+  +.+|+.+|.++.....+..    .|.    .+.  +..+.+         ...
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal---------~~A  310 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV---------SEA  310 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH---------hhC
Confidence            4578999999873 43444444444  4799999999865433322    232    111  222221         356


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+|+.......  -.....+..+|+||+|+--
T Consensus       311 DVVI~tTGt~~--vI~~e~L~~MK~GAiLiNv  340 (477)
T PLN02494        311 DIFVTTTGNKD--IIMVDHMRKMKNNAIVCNI  340 (477)
T ss_pred             CEEEECCCCcc--chHHHHHhcCCCCCEEEEc
Confidence            98887443322  1236677889999998863

>PRK07063 short chain dehydrogenase; Provisional

Probab=80.58  E-value=17  Score=30.99  Aligned_cols=85  Identities=18%  Similarity=0.123  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--CC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~~  193 (279)
                      .++++|-.|+. |..+..+++.+. .+.+|+.++.+++..+...+.+...+...++.++.+|..+.  +..+..+-  .-
T Consensus         6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            46789988865 556666666553 35789999998887766666665422334578888887542  22211100  02


Q ss_pred             CcEEEEEEeCC
Q 023645          194 SSYDFAFVDAE  204 (279)
Q Consensus       194 ~~fDlI~id~~  204 (279)
                      +.+|.++..+.
T Consensus        85 g~id~li~~ag   95 (260)
T PRK07063         85 GPLDVLVNNAG   95 (260)
T ss_pred             CCCcEEEECCC
Confidence            57899887653

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=80.48  E-value=33  Score=31.71  Aligned_cols=48  Identities=17%  Similarity=0.140  Sum_probs=32.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC------CCCCEEEEEeC----ChhHHHHHHHHHH
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL------PESGCLVACER----DARSLEVAKKYYE  165 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~------~~~~~v~~iD~----s~~~~~~a~~~~~  165 (279)
                      .+.-+|+|+|.|.|.-=..|.+.+      |+.-+||+|+.    +...++.+.+++.
T Consensus       109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~  166 (374)
T PF03514_consen  109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLA  166 (374)
T ss_pred             CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHH
Confidence            345589999999997444444433      23458999999    6666666655543

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PRK06914 short chain dehydrogenase; Provisional

Probab=80.42  E-value=37  Score=29.25  Aligned_cols=81  Identities=15%  Similarity=0.144  Sum_probs=51.1

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH--HH---HHhCCCC
Q 023645          120 AQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KA---LILNGEA  193 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~---~~~~~~~  193 (279)
                      .+++|-.|+ +|..+..+++.+ ..+.+|++++.+++..+...+.....+...++.++.+|..+.-  ..   ....  -
T Consensus         3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~--~   79 (280)
T PRK06914          3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKE--I   79 (280)
T ss_pred             CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHh--c
Confidence            357888884 566676666554 3356899999888766655555554444456889999886531  11   1111  2


Q ss_pred             CcEEEEEEeC
Q 023645          194 SSYDFAFVDA  203 (279)
Q Consensus       194 ~~fDlI~id~  203 (279)
                      ++.|.|+..+
T Consensus        80 ~~id~vv~~a   89 (280)
T PRK06914         80 GRIDLLVNNA   89 (280)
T ss_pred             CCeeEEEECC
Confidence            5789988764

>PRK05939 hypothetical protein; Provisional

Probab=80.42  E-value=29  Score=32.27  Aligned_cols=125  Identities=17%  Similarity=0.137  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhH-HHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~-~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +|....+=..++........+-+.+|.+.....+...+.++.+|+..+..-.. .... ..++..|.  .+.++..+-.+
T Consensus        46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~G~--~v~~v~~~d~e  122 (397)
T PRK05939         46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGLGV--EVTMVDATDVQ  122 (397)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhcCC--EEEEECCCCHH
Confidence            45555555556666666677777777666555554445556678776653221 1222 23444453  24444322122


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCC-CcEEEEeCCCCCCc
Q 023645          183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGK  235 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~-gG~lv~dd~~~~g~  235 (279)
                      .+....    ..+-.+|++...  .......++.+.++.+. |..+++|++.-.+.
T Consensus       123 ~l~~~l----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~  174 (397)
T PRK05939        123 NVAAAI----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW  174 (397)
T ss_pred             HHHHhC----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc
Confidence            333322    244567877643  22223445556555554 45666777654443

>PRK10083 putative oxidoreductase; Provisional

Probab=80.25  E-value=17  Score=32.44  Aligned_cols=100  Identities=13%  Similarity=0.125  Sum_probs=53.8

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHH-CCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVY-TGYSSLAIALV-LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~t~~la~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ....++.+||=.|+| .|..+..+++. ++ -..+++++.+++..+.+++    .|...-+.....+..+.+.   ..  
T Consensus       156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~---~~--  225 (339)
T PRK10083        156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEPLGEALE---EK--  225 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHh---cC--
Confidence            345567788888853 12233344553 23 2358889998887766654    3442212222222222221   11  


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ...+|+||--...   ...+....+.|+++|.++.
T Consensus       226 g~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~  257 (339)
T PRK10083        226 GIKPTLIIDAACH---PSILEEAVTLASPAARIVL  257 (339)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEE
Confidence            1235666543221   2356777889999999886

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=80.15  E-value=13  Score=34.81  Aligned_cols=96  Identities=19%  Similarity=0.147  Sum_probs=57.3

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      .++|+=+|+  |..+..+++.+.. +..|+.+|.+++.++..++..      ..+.++.||+.+. ..+... +-..+|.
T Consensus       231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~-~~L~~~-~~~~a~~  300 (453)
T PRK09496        231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQ-ELLEEE-GIDEADA  300 (453)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCH-HHHHhc-CCccCCE
Confidence            467888777  7777777776643 568999999998876655532      1367889998643 222111 1467888


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEE
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGII  225 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~l  225 (279)
                      |++-.+.....-....+.+.+.+.-++
T Consensus       301 vi~~~~~~~~n~~~~~~~~~~~~~~ii  327 (453)
T PRK09496        301 FIALTNDDEANILSSLLAKRLGAKKVI  327 (453)
T ss_pred             EEECCCCcHHHHHHHHHHHHhCCCeEE
Confidence            887544322222223333445444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
3cbg_A	232	Functional And Structural Characterization Of A Cat		1e-53
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		9e-49
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		2e-44
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		3e-43
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		9e-38
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		7e-36
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		2e-35
3dul_A	223	Crystal Structure Analysis Of The O-Methyltransfera		5e-26
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		4e-21
2gpy_A	233	Crystal Structure Of Putative O-methyltransferase F		6e-18
3ntv_A	232	Crystal Structure Of A Putative Caffeoyl-Coa O-Meth		1e-11
1jr4_A	221	Catechol O-Methyltransferase Bisubstrate-Inhibitor		2e-06
2zlb_A	223	Crystal Structure Of Apo Form Of Rat Catechol-O- Me		2e-06
3oe4_A	221	Rat Catechol O-Methyltransferase In Complex With A		2e-06
3bwm_A	214	Crystal Structure Of Human Catechol O-Methyltransfe		5e-06
3dr5_A	221	Crystal Structure Of The Q8nrd3_corgl Protein From		5e-06
3a7e_A	216	Crystal Structure Of Human Comt Complexed With Sam		6e-06
3bwy_A	214	Crystal Structure Of Human 108m Catechol O- Methylt		1e-05
1dl5_A	317	Protein-L-Isoaspartate O-Methyltransferase Length =		2e-04

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/219 (43%), Positives = 149/219 (68%), Gaps = 1/219 (0%)
Query: 62  NKQVISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
            K +    P LY Y+   +  +   L QLR ETA + G+ MQ+SP+QAQ L +L+ + GA
Sbjct: 14  GKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGA 73
Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
           ++ +E+GV+ GYS+LA+AL LP  G ++AC++D  +  +AKKY+++AGV+ K+ ++ G A
Sbjct: 74  KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA 133
Query: 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQM 240
             +L+ L        +D  F+DA+KR Y  Y+E+ L L+R GG++VIDNVLWHGKV +  
Sbjct: 134 LATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVD 193
Query: 241 VNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
             +A+T  ++ FN++L +DERV IS++P+GDGMT+  K+
Sbjct: 194 PQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK 232

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score =  190 bits (482), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 144/214 (67%), Gaps = 2/214 (0%)
Query: 68  VTPPLYDYILR-NVREPEILRQLREETA-GMRGSQMQVSPDQAQLLAMLVQILGAQRCIE 125
           +TP LY Y+L+ ++REP +L +LREET         Q +P+QAQLLA+LV++  A++ I+
Sbjct: 11  LTPELYQYLLQVSLREPPLLAELREETTRSFSTYAXQTAPEQAQLLALLVKLXQAKKVID 70
Query: 126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185
           +G +TGYS++A  L LP+ G L+ C+ D +S  +AK+Y+E+AG+S K+ ++   A D+L 
Sbjct: 71  IGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA 130
Query: 186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK 245
            LI  G+A  YD  ++DA+K     Y+E  L+L+R GG+I +DNVL  G+VAD+      
Sbjct: 131 ELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSEN 190
Query: 246 TISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
              IR FN+ + +DERV   ++PIGDG+T+ +K+
Sbjct: 191 NQLIRLFNQKVYKDERVDXILIPIGDGLTLARKK 224

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/213 (39%), Positives = 135/213 (63%), Gaps = 1/213 (0%)
Query: 66  ISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           +S+TP LY Y+L  ++RE   L  LR+ET+ M  + MQV+P+QAQ + ML+++  A++ +
Sbjct: 6   LSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVL 65
Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
           E+G +TGYS+LA++L LP+ G ++ C+ +    + A  Y+  A   HK+K++ G A D+L
Sbjct: 66  ELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL 125
Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA 244
            +L+  G    +DF F+DA+K  Y  Y+EL L+L+   G+I IDN+ W GKV D      
Sbjct: 126 HSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSG 185
Query: 245 KTISIRNFNKNLMEDERVSISMVPIGDGMTICQ 277
           +T  I+  N+ +  D RV +S++ I DGM + Q
Sbjct: 186 QTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQ 218

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score =  171 bits (434), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 94/230 (40%), Positives = 147/230 (63%), Gaps = 12/230 (5%)
Query: 62  NKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +++ IS+T  L +YI RN VREP+   +LR+ET  +  + MQ+SP++ Q L +L +I GA
Sbjct: 2   SRKNISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGA 61
Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
           +R IE+G +TGYSSL  A  LPE G ++ C+       VA+KY++  G+ +K+ +K G A
Sbjct: 62  KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121
Query: 181 ADSLKALILNGEASSY--DFA---------FVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229
            ++L+ LI +  A S+  DFA         F+DA+K  Y  Y+ L+L+L++ GG+++ DN
Sbjct: 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN 181
Query: 230 VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           VLW G VAD    +  T+ IR FN+ +  D  V +S+VPI DG+++ +KR
Sbjct: 182 VLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR 231

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  153 bits (387), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 129/219 (58%), Gaps = 14/219 (6%)
Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      RE E +++LRE TA    + M  S D+ Q L+ML++++ A+  +E+GV
Sbjct: 29  LYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGV 88
Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL +PE G ++A + +  + E+     ++AGV HK+  + G A   L  +I
Sbjct: 89  YTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI 148
Query: 189 LNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI 247
            + +   SYDF FVDA+K  Y  Y + L+ L++VGG+I  DN LW+G V      DA   
Sbjct: 149 KDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVV--APPDAPLR 206
Query: 248 S----IRNF----NKNLMEDERVSISMVPIGDGMTICQK 278
                 R+F    NK L  D R+ I M+P+GDG+TIC++
Sbjct: 207 KYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRR 245

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  147 bits (371), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 84/218 (38%), Positives = 128/218 (58%), Gaps = 19/218 (8%)
Query: 75  YILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTG 131
           YILR     RE   L++LRE       S M  SP   QL++ +++++ A++ IEVGV+TG
Sbjct: 23  YILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTG 82
Query: 132 YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL--IL 189
           YS L  AL +P+ G + A + D  + E+   +  +AGV HK+     + +D++ AL  +L
Sbjct: 83  YSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF---IESDAMLALDNLL 139
Query: 190 NGEAS--SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVA-------DQM 240
            G+ S  SYDF FVDA+K  Y +Y E L++L++VGGI+  DN LW G VA       D M
Sbjct: 140 QGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFM 199
Query: 241 VNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
             + +  ++   NK L  D R+ I  +P+GDG+T C++
Sbjct: 200 KENRE--AVIELNKLLAADPRIEIVHLPLGDGITFCRR 235

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 133/224 (59%), Gaps = 5/224 (2%)
Query: 60  YSNKQVISVTPP----LYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           +  ++   + PP    L+ Y+L R++RE   LR LR  T         ++ +QAQLLA L
Sbjct: 5   WRGRREQCLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANL 64
Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
            +++ A++ +++G +TGYS+LA+AL LP  G +V CE DA+  E+ +  + +A   HK+ 
Sbjct: 65  ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKID 124
Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           ++   A ++L  L+  GEA ++D A VDA+K     Y+E  LQL+R GGI+ +  VLW G
Sbjct: 125 LRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRG 184
Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
           KV      D     +RN N+ +  D RV IS++P+GDG+T+  K
Sbjct: 185 KVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 228

>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From Bacillus Cereus Length = 223

Iteration: 1
 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 96/161 (59%), Gaps = 1/161 (0%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162
           VSP Q + L +LVQI GA+  +E+G   GYS++ +A  L   G +V  E   +  ++A+ 
Sbjct: 42  VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS 101
Query: 163 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG 222
             ERA ++ +V+++ GLA DSL+  I N +   +DF F+DA+K+    YFE  L+L R G
Sbjct: 102 NIERANLNDRVEVRTGLALDSLQQ-IENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPG 160
Query: 223 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS 263
            +I+ DNV+  G+V D   ND +   IR F + +  + RVS
Sbjct: 161 TVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVS 201

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 98/179 (54%), Gaps = 8/179 (4%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162
           V+ +Q Q LA+LV++  A+R +E+G   GYS++  A  LP  G L+  E DA   +VA++
Sbjct: 47  VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARE 106
Query: 163 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG 222
             + AGV  +V ++ G A  SL++L   GE  ++D  F+DA+K     Y    L+  R G
Sbjct: 107 NLQLAGVDQRVTLREGPALQSLESL---GECPAFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 223 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS-ISMVPIG----DGMTIC 276
            +I+ DNV+  G+V +    D +   +R F +    + R++  ++  +G    DG T+ 
Sbjct: 164 TLIIGDNVVRDGEVVNPQSADERVQGVRQFIEXXGAEPRLTATALQTVGTKGWDGFTLA 222

>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From Bacillus Halodurans Length = 233

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
           L  L++     R +E+G   GYS++  A  LPE+  +V+ ERD R  E A K+ +  G+ 
Sbjct: 46  LLHLLKXAAPARILEIGTAIGYSAIRXAQALPEA-TIVSIERDERRYEEAHKHVKALGLE 104
Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230
            ++++  G A    + L L      +D  F+DA K  Y+ +F+     +R GG+I+ DNV
Sbjct: 105 SRIELLFGDALQLGEKLELY---PLFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNV 161
Query: 231 LWHGKVADQMVNDAK----TISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           L+ G VA+  +   +       I  +N+ L+E  +    + P+GDG+ I  KR
Sbjct: 162 LFRGLVAETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKR 214

>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa O-Methyltransferase From Staphylococcus Aureus Length = 232

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 88/174 (50%), Gaps = 10/174 (5%)
Query: 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 169
           L+  L++    +  +E+G   GYSS   A +  +   +   ER+   ++ AK+       
Sbjct: 62  LIKQLIRXNNVKNILEIGTAIGYSSXQFASI-SDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 170 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229
            ++V+I  G A +  +    N     YD  F+DA K   +++FE+   L++  G+++ DN
Sbjct: 121 ENQVRIIEGNALEQFE----NVNDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITDN 176
Query: 230 VLWHGKVADQMVNDAKTI-----SIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
           VL+HG V+D  +  ++ +      ++++N+ L++    + + + I DG+ I  K
Sbjct: 177 VLYHGFVSDIGIVRSRNVRQXVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIK 230

>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex Length = 221

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 75  YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
           Y+ +N +  +P+ + +  +     +   M V   + Q++  +++       +E+G Y GY
Sbjct: 12  YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 71
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
           S++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L    +
Sbjct: 72  SAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 131
Query: 193 ASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 234
             + D  F+D  K  Y     LL +  L+R G +++ DNV+  G
Sbjct: 132 VDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 175

>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O- Methyltransferase Length = 223

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 75  YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
           Y+ +N +  +P+ + +  +     +   M V   + Q++  +++       +E+G Y GY
Sbjct: 14  YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 73
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
           S++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L    +
Sbjct: 74  SAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 133
Query: 193 ASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 234
             + D  F+D  K  Y     LL +  L+R G +++ DNV+  G
Sbjct: 134 VDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 177

>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A Catechol-Type, Purine-Containing Bisubstrate Inhibitor - Humanized Form Length = 221

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 75  YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
           Y+ +N +  +P+ + +  +     +   M V   + Q++  +++       +E+G Y GY
Sbjct: 12  YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 71
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
           S++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L    +
Sbjct: 72  SAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 131
Query: 193 ASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 234
             + D  F+D  K  Y     LL +  L+R G +++ DNV+  G
Sbjct: 132 VDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 175

>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase With Bound Sam And Dnc Length = 214

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M V   + +++  ++Q       +E+G Y GYS++ +A +L     L+  E +     + 
Sbjct: 39  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ--L 218
           ++  + AGV  KV +  G + D +  L    +  + D  F+D  K  Y     LL +  L
Sbjct: 99  QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGL 158
Query: 219 IRVGGIIVIDNVLWHG 234
           +R G +++ DNV+  G
Sbjct: 159 LRKGTVLLADNVICPG 174

>pdb|3DR5|A Chain A, Crystal Structure Of The Q8nrd3_corgl Protein From Corynebacterium Glutamicum. Northeast Structural Genomics Consortium Target Cgr117 Length = 221

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 28/190 (14%)
Query: 104 SPDQ--AQLLAMLVQIL---GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE 158
           +PD+   QLL  L       G+   I +    G   L I   L ++  L   + ++    
Sbjct: 36  APDEXTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQR 95
Query: 159 VAKKYYERAG---------VSHKVKIKHGLAADSLKALILNGEASSYDF-AFVDAEKRMY 208
            AK  +  AG         +S  + +   LA DS +  ++ G+ S  D  A VDA     
Sbjct: 96  QAKALFREAGYSPSRVRFLLSRPLDVXSRLANDSYQ--LVFGQVSPXDLKALVDAA---- 149
Query: 209 QEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVP 268
                    L+R GG +V+ + L  G +ADQ   D  T + R+ ++ +   E   ++ +P
Sbjct: 150 -------WPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLP 202
Query: 269 IGDGMTICQK 278
           +G G+T+  K
Sbjct: 203 LGAGLTVVTK 212

>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And 3,5- Dinitrocatechol Length = 216

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M V   + +++  ++Q       +E+G Y GYS++ +A +L     L+  E +     + 
Sbjct: 42  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 101
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ--L 218
           ++  + AGV  KV +  G + D +  L    +  + D  F+D  K  Y     LL +  L
Sbjct: 102 QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGL 161
Query: 219 IRVGGIIVIDNVLWHG 234
           +R G +++ DNV+  G
Sbjct: 162 LRKGTVLLADNVICPG 177

>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O- Methyltransferase Bound With S-Adenosylmethionine And Inhibitor Dinitrocatechol Length = 214

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M V   + +++  ++Q       +E+G Y GYS++ +A +L     L+  E +     + 
Sbjct: 39  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ--L 218
           ++  + AG+  KV +  G + D +  L    +  + D  F+D  K  Y     LL +  L
Sbjct: 99  QRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGL 158
Query: 219 IRVGGIIVIDNVLWHG 234
           +R G +++ DNV+  G
Sbjct: 159 LRKGTVLLADNVICPG 174

>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase Length = 317

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 104 SPDQAQLLAMLVQILG---AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           +  Q  L+A+ ++ +G     R +E+G  TGY++  ++ V+ E G +V+ E   +  E+A
Sbjct: 57  TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIA 116
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201
           K+  ER G+ + + +      D    +    E S YD  FV
Sbjct: 117 KRNVERLGIENVIFV----CGDGYYGV---PEFSPYDVIFV 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	1e-107
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	1e-104
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	1e-104
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	1e-104
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	1e-102
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	1e-102
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	1e-102
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	1e-101
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	2e-98
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	1e-93
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	9e-93
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	7e-92
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	1e-90
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	6e-85
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	6e-09
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	6e-08
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	9e-08
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	5e-07
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	7e-07
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	2e-06
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	2e-06
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	5e-06
2b25_A	336	Hypothetical protein; structural genomics, methyl	1e-05
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	1e-05
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	2e-05
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	3e-05
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	1e-04
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	2e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	2e-04
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	3e-04
2h00_A	254	Methyltransferase 10 domain containing protein; st	5e-04

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score =  309 bits (795), Expect = e-107
 Identities = 97/229 (42%), Positives = 152/229 (66%), Gaps = 3/229 (1%)

Query: 54  SAHDEKYSN--KQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQL 110
           S H   + +  K +    P LY Y+      +   L QLR ETA + G+ MQ+SP+QAQ 
Sbjct: 4   SHHHHHHGSMGKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQF 63

Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
           L +L+ + GA++ +E+GV+ GYS+LA+AL LP  G ++AC++D  +  +AKKY+++AGV+
Sbjct: 64  LGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA 123

Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230
            K+ ++ G A  +L+ L        +D  F+DA+KR Y  Y+E+ L L+R GG++VIDNV
Sbjct: 124 EKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNV 183

Query: 231 LWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           LWHGKV +    +A+T  ++ FN++L +DERV IS++P+GDGMT+  K+
Sbjct: 184 LWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK 232

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score =  302 bits (776), Expect = e-104
 Identities = 84/214 (39%), Positives = 134/214 (62%), Gaps = 1/214 (0%)

Query: 66  ISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           +S+TP LY Y+L   +RE   L  LR+ET+ M  + MQV+P+QAQ + ML+++  A++ +
Sbjct: 6   LSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVL 65

Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
           E+G +TGYS+LA++L LP+ G ++ C+ +    + A  Y+  A   HK+K++ G A D+L
Sbjct: 66  ELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL 125

Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA 244
            +L+  G    +DF F+DA+K  Y  Y+EL L+L+   G+I IDN+ W GKV D      
Sbjct: 126 HSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSG 185

Query: 245 KTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
           +T  I+  N+ +  D RV +S++ I DGM + Q 
Sbjct: 186 QTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQP 219

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score =  301 bits (774), Expect = e-104
 Identities = 92/230 (40%), Positives = 144/230 (62%), Gaps = 12/230 (5%)

Query: 62  NKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +++ IS+T  L +YI RN VREP+   +LR+ET  +  + MQ+SP++ Q L +L +I GA
Sbjct: 2   SRKNISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGA 61

Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
           +R IE+G +TGYSSL  A  LPE G ++ C+       VA+KY++  G+ +K+ +K G A
Sbjct: 62  KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121

Query: 181 ADSLKALILNGEAS-----------SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229
            ++L+ LI +  A            S D  F+DA+K  Y  Y+ L+L+L++ GG+++ DN
Sbjct: 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN 181

Query: 230 VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           VLW G VAD    +  T+ IR FN+ +  D  V +S+VPI DG+++ +KR
Sbjct: 182 VLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR 231

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score =  300 bits (771), Expect = e-104
 Identities = 94/221 (42%), Positives = 148/221 (66%), Gaps = 3/221 (1%)

Query: 61  SNKQVISVTPPLYDYILRN-VREPEILRQLREETAG-MRGSQMQVSPDQAQLLAMLVQIL 118
           S      +TP LY Y+L+  +REP +L +LREET        MQ +P+QAQLLA+LV+++
Sbjct: 5   SINT-TLLTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLM 63

Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
            A++ I++G +TGYS++A+ L LP+ G L+ C+ D +S  +AK+Y+E+AG+S K+ ++  
Sbjct: 64  QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS 123

Query: 179 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD 238
            A D+L  LI  G+A  YD  ++DA+K     Y+E  L+L+R GG+I +DNVL  G+VAD
Sbjct: 124 PAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVAD 183

Query: 239 QMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           +         IR FN+ + +DERV + ++PIGDG+T+ +K+
Sbjct: 184 EENQSENNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK 224

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  297 bits (762), Expect = e-102
 Identities = 83/233 (35%), Positives = 126/233 (54%), Gaps = 10/233 (4%)

Query: 55  AHDEKYSNKQVISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLL 111
           A  ++  N   +  +  L  YILR     RE   L++LRE       S M  SP   QL+
Sbjct: 4   AVMKQVKNTG-LLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLM 62

Query: 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 171
           + +++++ A++ IEVGV+TGYS L  AL +P+ G + A + D  + E+   +  +AGV H
Sbjct: 63  SFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEH 122

Query: 172 KVKIKHGLAADSLKALILNGEAS-SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230
           K+      A  +L  L+   E+  SYDF FVDA+K  Y +Y E L++L++VGGI+  DN 
Sbjct: 123 KINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNT 182

Query: 231 LWHGKVAD-----QMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
           LW G VA               ++   NK L  D R+ I  +P+GDG+T C++
Sbjct: 183 LWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRR 235

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  296 bits (761), Expect = e-102
 Identities = 60/225 (26%), Positives = 112/225 (49%), Gaps = 9/225 (4%)

Query: 61  SNKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILG 119
             + +      + +Y+++  +    +L ++ E           V+ +Q Q LA+LV++  
Sbjct: 4   GKRHMQQQWSAVDNYLIKALIPGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQ 63

Query: 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179
           A+R +E+G   GYS++ +A  LP  G L+  E DA   +VA++  + AGV  +V ++ G 
Sbjct: 64  AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGP 123

Query: 180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQ 239
           A  SL++L   GE  ++D  F+DA+K     Y    L+  R G +I+ DNV+  G+V + 
Sbjct: 124 ALQSLESL---GECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNP 180

Query: 240 MVNDAKTISIRNFNKNLMEDERVSISMVPI-----GDGMTICQKR 279
              D +   +R F + +  + R++ + +        DG T+    
Sbjct: 181 QSADERVQGVRQFIEMMGAEPRLTATALQTVGTKGWDGFTLAWVN 225

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score =  295 bits (758), Expect = e-102
 Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 4/224 (1%)

Query: 59  KYSNKQVISVTP---PLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
               ++   + P    L+ Y+L   +RE   LR LR  T         ++ +QAQLLA L
Sbjct: 5   WRGRREQCLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANL 64

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
            +++ A++ +++G +TGYS+LA+AL LP  G +V CE DA+  E+ +  + +A   HK+ 
Sbjct: 65  ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKID 124

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           ++   A ++L  L+  GEA ++D A VDA+K     Y+E  LQL+R GGI+ +  VLW G
Sbjct: 125 LRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRG 184

Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
           KV      D     +RN N+ +  D RV IS++P+GDG+T+  K
Sbjct: 185 KVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 228

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score =  292 bits (751), Expect = e-101
 Identities = 67/220 (30%), Positives = 113/220 (51%), Gaps = 7/220 (3%)

Query: 66  ISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           I     +  Y+    + +   L ++ +  A        VSP Q + L +LVQI GA+  +
Sbjct: 4   IETWTAVDQYVSDVLIPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNIL 63

Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
           E+G   GYS++ +A  L   G +V  E   +  ++A+   ERA ++ +V+++ GLA DSL
Sbjct: 64  EIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSL 123

Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA 244
           + +  N +   +DF F+DA+K+    YFE  L+L R G +I+ DNV+  G+V D   ND 
Sbjct: 124 QQIE-NEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDP 182

Query: 245 KTISIRNFNKNLMEDERVSISMVPI-----GDGMTICQKR 279
           +   IR F + +  + RVS + +        DG  +   +
Sbjct: 183 RVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAVVK 222

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  287 bits (737), Expect = 2e-98
 Identities = 84/227 (37%), Positives = 129/227 (56%), Gaps = 10/227 (4%)

Query: 62  NKQVISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQIL 118
             + +  +  LY YIL      RE E +++LRE TA    + M  S D+ Q L+ML++++
Sbjct: 19  GHKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLI 78

Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
            A+  +E+GVYTGYS LA AL +PE G ++A + +  + E+     ++AGV HK+  + G
Sbjct: 79  NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 138

Query: 179 LAADSLKALILNGEAS-SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVA 237
            A   L  +I + +   SYDF FVDA+K  Y  Y + L+ L++VGG+I  DN LW+G V 
Sbjct: 139 PALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVV 198

Query: 238 DQMVNDAK------TISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
                  +         +   NK L  D R+ I M+P+GDG+TIC++
Sbjct: 199 APPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRR 245

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score =  274 bits (704), Expect = 1e-93
 Identities = 48/233 (20%), Positives = 102/233 (43%), Gaps = 14/233 (6%)

Query: 53  SSAHDEKYSNKQVISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLL 111
              H      +    +      Y++  +  +   +  LRE           V      L+
Sbjct: 7   HHHHSSGLVPRG-SHMDDLNKKYLIDLHQHQNSSIEVLREFAEVNE--VPIVDRLTLDLI 63

Query: 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 171
             L+++   +  +E+G   GYSS+  A  + +   +   ER+   ++ AK+        +
Sbjct: 64  KQLIRMNNVKNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYHFEN 122

Query: 172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231
           +V+I  G A +  + +        YD  F+DA K   +++FE+   L++  G+++ DNVL
Sbjct: 123 QVRIIEGNALEQFENV----NDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVL 178

Query: 232 WHGKVADQMVNDAK-----TISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           +HG V+D  +  ++        ++++N+ L++    + + + I DG+ I  K 
Sbjct: 179 YHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKG 231

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score =  272 bits (699), Expect = 9e-93
 Identities = 59/217 (27%), Positives = 105/217 (48%), Gaps = 11/217 (5%)

Query: 68  VTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEV 126
           +   L  Y+ +      + + Q+  E    +   M       + L  L+++    R +E+
Sbjct: 4   IEERLKHYLEKQIPARDQYIEQMEREAHEQQVPIMD--LLGMESLLHLLKMAAPARILEI 61

Query: 127 GVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186
           G   GYS++ +A  LPE   +V+ ERD R  E A K+ +  G+  ++++  G A    + 
Sbjct: 62  GTAIGYSAIRMAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK 120

Query: 187 LILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD----QMVN 242
           L L      +D  F+DA K  Y+ +F++   ++R GG+I+ DNVL+ G VA+       +
Sbjct: 121 LELYP---LFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAETDIEHKRH 177

Query: 243 DAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
                 I  +N+ L+E  +    + P+GDG+ I  KR
Sbjct: 178 KQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKR 214

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score =  269 bits (691), Expect = 7e-92
 Identities = 39/212 (18%), Positives = 83/212 (39%), Gaps = 10/212 (4%)

Query: 68  VTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEV 126
           V   +  Y+         ++  + +           V     +LL +L +I   Q  +  
Sbjct: 6   VDSRIGAYLDGLLPEADPVVAAMEQIARERN--IPIVDRQTGRLLYLLARIKQPQLVVVP 63

Query: 127 GVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186
           G   G +S   A  +  S  +V  + D  ++E A++     G+  +V+++ G        
Sbjct: 64  GDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG 123

Query: 187 LILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKT 246
                     D  F+D +     +  E + + +    +++  N L  G VA+    D +T
Sbjct: 124 Q------RDIDILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRRGSVAES-HEDPET 176

Query: 247 ISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
            ++R FN +L        ++VP+G+G+ +  +
Sbjct: 177 AALREFNHHLSRRRDFFTTIVPVGNGVLLGYR 208

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score =  266 bits (683), Expect = 1e-90
 Identities = 45/217 (20%), Positives = 79/217 (36%), Gaps = 10/217 (4%)

Query: 67  SVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQIL---GAQRC 123
           +    L  Y+         + + RE+ A              QLL  L       G+   
Sbjct: 3   NAFEYLRTYVESTTETDAAVARAREDAAEF--GLPAPDEMTGQLLTTLAATTNGNGSTGA 60

Query: 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-SHKVKIKHGLAAD 182
           I +    G   L I   L ++  L   + ++     AK  +  AG    +V+       D
Sbjct: 61  IAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD 120

Query: 183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVN 242
            +  L       SY   F        +   +    L+R GG +V+ + L  G +ADQ   
Sbjct: 121 VMSRL----ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRK 176

Query: 243 DAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
           D  T + R+ ++ +   E   ++ +P+G G+T+  K 
Sbjct: 177 DRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVTKA 213

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score =  252 bits (646), Expect = 6e-85
 Identities = 41/212 (19%), Positives = 86/212 (40%), Gaps = 11/212 (5%)

Query: 72  LYDYILRNV--REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
           +  Y+ +N    +P+ + +  +     +   M V   + Q++  +++       +E+G Y
Sbjct: 9   ILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAY 68

Query: 130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
            GYS++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L  
Sbjct: 69  CGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK 128

Query: 190 NGEASSYDFAFVDAEKRMYQEYFELL--LQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI 247
             +  + D  F+D  K  Y     LL    L+R G +++ DNV+  G             
Sbjct: 129 KYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDF-------LA 181

Query: 248 SIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
            +R  +          +  + + DG+     +
Sbjct: 182 YVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ 213

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.9 bits (170), Expect = 1e-13
 Identities = 46/293 (15%), Positives = 84/293 (28%), Gaps = 89/293 (30%)

Query: 10  FAFVLLKTEKTVAKF--------HSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYS 61
           F  +L K E+ V KF        + F L   ++      +  +  T         D  Y+
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQ---RQPSMMTRM--YIEQRDRLYN 121

Query: 62  NKQVISVTPPLYDYILRNVREPEI-------LRQLREETA----GMRGSQMQVSPDQAQL 110
           + QV             NV   +        L +LR        G+ GS          +
Sbjct: 122 DNQVF---AK------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW------V 166

Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
              +      Q  ++  ++  + +L              C      LE+ +K        
Sbjct: 167 ALDVCLSYKVQCKMDFKIF--WLNLK------------NCNSPETVLEMLQKLL------ 206

Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY---QEYFELLLQLIRVGGIIVI 227
           +++       +D    + L   +       + AE R     + Y   LL         V+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHS-------IQAELRRLLKSKPYENCLL---------VL 250

Query: 228 DNVLWHGKVADQMVNDAKTI------SIRNFNKNLMEDERVSISMVPIGDGMT 274
            NV  + K  +      K +       + +F   L       IS+      +T
Sbjct: 251 LNV-QNAKAWNAFNLSCKILLTTRFKQVTDF---LSAATTTHISLDHHSMTLT 299

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 54.6 bits (131), Expect = 6e-09
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 89  LREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLV 148
           L +E   M+     V P  +  +AM++ +    R I+ GV +G     +A  +  SG + 
Sbjct: 82  LIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVF 141

Query: 149 ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY 208
           A E+     ++A+    + G+  +V IK    ++         +    D  F+D      
Sbjct: 142 AYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-------GFDEKDVDALFLDVPDP-- 192

Query: 209 QEYFELLLQLIRVGGIIVI 227
             Y +   + ++ GG    
Sbjct: 193 WNYIDKCWEALKGGGRFAT 211

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236

 Score = 51.4 bits (122), Expect = 6e-08
 Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 16/148 (10%)

Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
              R +EVG     ++  +     +       E +    +  + +  R    HKV    G
Sbjct: 60  KGGRVLEVGFGMAIAASKVQEAPIDE--HWIIECNDGVFQRLRDWAPRQT--HKVIPLKG 115

Query: 179 LAADSLKALILNGEASSYDFAFVDAEKRMYQE--------YFELLLQLIRVGGIIVIDNV 230
           L  D    L        +D    D      +               +L++ GG++   N+
Sbjct: 116 LWEDVAPTL----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171

Query: 231 LWHGKVADQMVNDAKTISIRNFNKNLME 258
              G++     +D   +        L+E
Sbjct: 172 TSWGELMKSKYSDITIMFEETQVPALLE 199

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 50.8 bits (121), Expect = 9e-08
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 89  LREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLV 148
           + +    M+     V P  A L+     I      +E GV +G  +L +A ++   G +V
Sbjct: 63  IVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVV 122

Query: 149 ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY 208
           + E      ++A +  + AG   +V IK     + +       E  + D   +D  +   
Sbjct: 123 SYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI-------EEENVDHVILDLPQP-- 173

Query: 209 QEYFELLLQLIRVGGIIVI 227
           +   E   + ++ GG  V 
Sbjct: 174 ERVVEHAAKALKPGGFFVA 192

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 25/171 (14%)

Query: 57  DEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQ 116
           DE   + +   V+     Y  R +R               R +Q+    D + ++     
Sbjct: 64  DELIVSGKSFIVSDFSPMYFGRVIR---------------RNTQIISEIDASYIIMRC-G 107

Query: 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK 176
           +      +EVGV +G  S  I   L   G L   ERD  +L+ A            V+  
Sbjct: 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS 167

Query: 177 HGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
               AD             YD    D        + + +  +++ G +   
Sbjct: 168 RSDIAD-------FISDQMYDAVIADI--PDPWNHVQKIASMMKPGSVATF 209

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 27/167 (16%), Positives = 64/167 (38%), Gaps = 19/167 (11%)

Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
             ++ +  +       ++VG  TG  +L +A  +     + A +R+  ++   +   +R 
Sbjct: 23  CLIMCLA-EPGKNDVAVDVGCGTGGVTLELAGRVRR---VYAIDRNPEAISTTEMNLQRH 78

Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
           G+   V +  G A ++L  +         D A V       QE   ++   ++ GG I++
Sbjct: 79  GLGDNVTLMEGDAPEALCKI------PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIV 132

Query: 228 DNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS-MVPIGDGM 273
             +L      +      + +    F+ N+     ++I+    +  G 
Sbjct: 133 TAIL-----LETKFEAMECLRDLGFDVNIT---ELNIARGRALDRGT 171

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 17/133 (12%), Positives = 50/133 (37%), Gaps = 11/133 (8%)

Query: 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG 168
             + M V+       ++     G  +  +A ++ E+G +   +   +++    K      
Sbjct: 14  DYIKMFVKE--GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN 71

Query: 169 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRV 221
           +  +V +      +  K +    +A  ++  ++ +             +     ++L+  
Sbjct: 72  LIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVT 131

Query: 222 GGIIVIDNVLWHG 234
           GGII +  V+++G
Sbjct: 132 GGIITV--VIYYG 142

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
           A  LA L      +   ++G  +G  S+   L        +  E  A  +E  +K  +  
Sbjct: 45  ALTLAAL-APRRGELLWDIGGGSGSVSVEWCLAGGR---AITIEPRADRIENIQKNIDTY 100

Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
           G+S +++   G A  +L  L         +  F+       Q  ++ L + +  G  IV 
Sbjct: 101 GLSPRMRAVQGTAPAALADL------PLPEAVFIGGGGS--QALYDRLWEWLAPGTRIVA 152

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 45.9 bits (108), Expect = 5e-06
 Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 27/169 (15%)

Query: 61  SNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +    + + P L DY++   R P++                 + P  A  +     I   
Sbjct: 58  NGALFLVLRPLLVDYVMSMPRGPQV-----------------IYPKDAAQIVHEGDIFPG 100

Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGVSHKVKIKHG 178
            R +E G  +G  +L++   +  +G +++ E+ A   E A++             ++   
Sbjct: 101 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 160

Query: 179 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
             AD            S D A +D       E  + + +L+  GG++++
Sbjct: 161 DLAD------SELPDGSVDRAVLDM--LAPWEVLDAVSRLLVAGGVLMV 201

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           RG+ +   P    ++  ++ I      +E G  +G  SL ++  +   G +++ E     
Sbjct: 84  RGTAI-TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDH 142

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAAD------SLKALILNGEASSYDFAFVDAEKRMYQE 210
            ++AKK Y+    S K+        +       +     + ++ ++D   +D        
Sbjct: 143 HDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNP--HV 200

Query: 211 YFELLLQLIRVGGIIVI 227
              +    ++ GG+  +
Sbjct: 201 TLPVFYPHLKHGGVCAV 217

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 19/109 (17%)

Query: 70  PPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
           P L + IL                   R +Q+ + P  +  +A+ + +   +R +E G  
Sbjct: 58  PTLEEIILLGFE---------------RKTQI-IYPKDSFYIALKLNLNKEKRVLEFGTG 101

Query: 130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
           +G     ++ V   +G +   E      + A+K  ++  +   VK  + 
Sbjct: 102 SGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNV 147

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
           A  L+ L ++       ++G  +   S+  A  L  +G + A ER+ + L   +   ++ 
Sbjct: 30  AVTLSKL-RLQDDLVMWDIGAGSASVSIE-ASNLMPNGRIFALERNPQYLGFIRDNLKKF 87

Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
              + V +    A + L  L         D  F+     M +E  + + + ++  G+IV+
Sbjct: 88  VARN-VTLVEAFAPEGLDDL------PDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVL 140

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           R +     P  A  +  L+ +    R +E G  +G  +L +A  + E G + + E     
Sbjct: 75  RSATP-TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHH 133

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL 216
           L  A++          V+   G   ++        E ++YD   +D       +  E   
Sbjct: 134 LAQAERNVRAFWQVENVRFHLGKLEEA------ELEEAAYDGVALDL--MEPWKVLEKAA 185

Query: 217 QLIRVGGIIVI 227
             ++    +V 
Sbjct: 186 LALKPDRFLVA 196

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 9/124 (7%)

Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
           A  ++ L      +   ++G  +G  ++      P+    V  E      E         
Sbjct: 15  ALAISAL-APKPHETLWDIGGGSGSIAIEWLRSTPQ-TTAVCFEISEERRERILSNAINL 72

Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
           GVS         A  +   +       + D  F+          F    + + VGG +V 
Sbjct: 73  GVSD-RIAVQQGAPRAFDDV-----PDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVA 125

Query: 228 DNVL 231
           + V 
Sbjct: 126 NAVT 129

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* Length = 236

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 12/136 (8%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERD 153
           RG +M   PD   +   ++  L  +  +E+GVY G S      +         ++  +RD
Sbjct: 59  RGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRD 118

Query: 154 ARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFE 213
               ++     E       + +  G  +D      L   A  +   F+D          +
Sbjct: 119 LSRCQIPASDMEN------ITLHQGDCSDLTTFEHLREMA--HPLIFIDNAHANTFNIMK 170

Query: 214 LLL-QLIRVGGIIVID 228
             +  L+  G   +I+
Sbjct: 171 WAVDHLLEEGDYFIIE 186

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 10/145 (6%)

Query: 87  RQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC 146
           R   E    +  ++ +    +  L   L           V        LA+         
Sbjct: 89  RVFYERLPAVLATRERHGHFRRALQRHLRP---GCVVASVPCGWMSELLALDYSACPGVQ 145

Query: 147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE---ASSYDFAFVDA 203
           LV  + D  +L+ A +      ++ ++ +    A      L         +S      + 
Sbjct: 146 LVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK----LDTREGYDLLTSNGLNIYEP 201

Query: 204 EKRMYQEYFELLLQLIRVGGIIVID 228
           +     E +    Q ++ GG +V  
Sbjct: 202 DDARVTELYRRFWQALKPGGALVTS 226

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 21/137 (15%)

Query: 106 DQAQLLAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGC--LVACERDARSLEVAKK 162
           DQ +    L + +    R ++V  YTG  ++  A+    +G   ++  ++  R++E AK+
Sbjct: 203 DQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAI----AGADEVIGIDKSPRAIETAKE 258

Query: 163 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD------------AEKRMYQE 210
             +  GV  ++K   G A + ++ L   GE   +D   +D            A  R Y  
Sbjct: 259 NAKLNGVEDRMKFIVGSAFEEMEKLQKKGE--KFDIVVLDPPAFVQHEKDLKAGLRAYFN 316

Query: 211 YFELLLQLIRVGGIIVI 227
                L L++ GGI+V 
Sbjct: 317 VNFAGLNLVKDGGILVT 333

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 122 RCIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
           R I++G  TG S +   L    +G   +A E D      AKK  E+  +S  +K+     
Sbjct: 68  RGIDIG--TGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ 125

Query: 181 ADSLKALILNGEASSYDFAFVD 202
              L   +       YDF   +
Sbjct: 126 KTLLMDALKEESEIIYDFCMCN 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	100.0
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	100.0
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	100.0
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	100.0
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	100.0
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	100.0
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	100.0
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	100.0
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	100.0
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	100.0
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	100.0
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.97
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.96
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.96
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.79
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.73
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.72
2o07_A	304	Spermidine synthase; structural genomics, structur	99.71
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.71
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.71
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.7
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.7
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.7
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.69
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.69
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.68
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.68
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.67
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.67
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.66
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.66
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.66
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.66
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.65
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.65
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.65
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.64
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.64
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.64
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.63
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.62
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.62
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.62
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.62
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.62
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.62
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.62
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.62
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.62
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.61
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.61
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.61
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.6
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.6
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.6
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.59
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.59
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.59
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.59
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.59
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.59
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.58
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.58
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.58
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.58
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.58
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.58
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.57
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.57
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.57
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.57
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.57
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.56
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.56
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.56
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.56
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.56
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.56
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.55
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.55
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.55
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.55
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.55
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.55
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.55
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.55
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.55
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.55
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.55
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.54
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.54
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.54
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.54
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.54
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.54
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.53
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.53
3ocj_A	305	Putative exported protein; structural genomics, PS	99.53
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.53
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.53
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.53
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.53
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.53
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.53
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.53
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.52
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.52
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.52
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.52
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.52
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.52
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.51
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.51
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.51
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.51
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.51
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.5
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.5
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.5
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.5
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.5
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.5
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.5
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.5
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.5
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.5
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.5
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.49
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.49
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.49
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.49
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.49
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.49
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.49
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.49
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.48
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.48
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.48
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.48
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.47
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.47
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.47
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.47
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.47
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.46
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.46
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.46
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.46
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.46
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.45
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.45
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.45
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.45
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.45
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.45
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.45
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.45
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.45
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.44
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.44
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.44
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.44
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.44
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.44
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.44
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.43
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.43
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.43
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.42
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.42
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.42
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.42
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.42
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.42
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.42
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.42
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.42
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.41
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.41
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.41
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.41
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.41
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.41
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.41
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.41
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.41
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.4
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.4
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.39
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.39
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.39
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.39
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.39
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.39
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.39
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.39
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.39
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.38
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.38
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.38
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.37
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.36
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.36
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.36
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.36
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.36
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.35
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.35
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.35
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.35
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.35
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.35
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.34
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.34
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.34
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.34
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.33
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.32
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.31
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	99.31
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.3
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.29
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.29
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.29
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.27
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.27
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.27
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.26
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.26
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.25
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.25
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.25
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.23
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.23
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.23
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.21
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.2
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.19
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.19
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.18
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.18
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.18
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.18
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.17
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.16
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.15
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.15
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.14
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.14
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.13
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.13
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.11
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.11
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.1
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.1
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.09
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.09
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.06
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.06
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.05
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.05
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.03
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.01
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.0
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.97
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.96
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.95
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.93
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.93
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.92
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.91
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.9
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.9
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.88
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.86
3khk_A	544	Type I restriction-modification system methylation	98.86
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.85
3lkd_A	542	Type I restriction-modification system methyltrans	98.82
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.78
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.75
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.74
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.73
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.68
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.62
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.52
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.33
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.25
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.24
3ufb_A	530	Type I restriction-modification system methyltran	98.12
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.02
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.99
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.95
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.92
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.74
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.72
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.67
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.65
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.63
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.61
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.59
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.5
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.12
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.12
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.1
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.0
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.91
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.91
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.89
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.88
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.86
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.86
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.7
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.52
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.5
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.41
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.32
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.32
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.28
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.27
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.25
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.24
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.23
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.21
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.16
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.15
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.14
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.13
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.08
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.06
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.05
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.04
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.04
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.98
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.95
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.94
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.93
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.93
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.92
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.9
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.9
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.85
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.8
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.78
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.77
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.67
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.66
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.64
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.59
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.5
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.48
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.47
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.47
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	95.43
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.34
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.34
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.29
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.29
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.27
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.26
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.22
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.08
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.98
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.97
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.95
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	94.88
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.87
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	94.81
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.75
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	94.71
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.44
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.09
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	94.05
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.87
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	93.85
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	93.68
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.53
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	93.52
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.47
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	93.45
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	92.8
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	92.74
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	92.69
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	92.54
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	92.52
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	92.49
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	92.33
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	92.1
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	92.06
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	91.71
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	91.62
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	91.49
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.48
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.48
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.45
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.02
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	90.99
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	90.91
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	90.74
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	90.73
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.72
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	90.53
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	90.51
3me5_A	482	Cytosine-specific methyltransferase; structural ge	90.5
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	90.36
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	90.32
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	90.31
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.16
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	90.1
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	90.03
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	89.98
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	89.81
1id1_A	153	Putative potassium channel protein; RCK domain, E.	89.59
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	89.49
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	89.4
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	89.1
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	89.08
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	89.06
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	88.99
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	88.47
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	88.35
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	88.31
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	88.16
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	88.14
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	88.11
1lnq_A	336	MTHK channels, potassium channel related protein;	87.98
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	87.84
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	87.81
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	87.72
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	87.5
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	87.2
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	86.94
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	86.72
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	86.41
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	86.38
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	86.15
3qha_A	296	Putative oxidoreductase; seattle structural genomi	86.13
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	86.04
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	85.98
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	85.98
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	85.87
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	85.77
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	85.75
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	85.66
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.52
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	85.42
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	85.03
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	85.03
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	85.02
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	84.95
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	84.83
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	84.67
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	84.58
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	84.43
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.37
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	83.9
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	83.85
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	83.49
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	83.48
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	82.98
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	82.97
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	82.95
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	82.89
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	82.75
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	82.71
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	82.6
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	82.39
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	82.21
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	82.19
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	82.03
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	81.98
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	81.85
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	81.67
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	81.64
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	81.62
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	81.57
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	81.51
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	81.39
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	81.19
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	81.14
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	80.95
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	80.84
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	80.82
3t8y_A	164	CHEB, chemotaxis response regulator protein-glutam	80.75
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	80.31
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	80.15
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	80.13
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	80.09
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	80.08
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	80.06

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=100.00  E-value=1.6e-37  Score=268.17  Aligned_cols=216  Identities=39%  Similarity=0.706  Sum_probs=197.3

Q ss_pred             ccCCCChhHHHHHHhcc-CChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC
Q 023645           64 QVISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP  142 (279)
Q Consensus        64 ~~~~~~~~l~~Y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~  142 (279)
                      ..+.+++.+.+|+.++. ++++.+.++++.+...+.+.+.+++..++++..++...++++|||||||+|++++++++.++
T Consensus         4 ~~~~~~~~~~~Y~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~   83 (242)
T 3r3h_A            4 KHLSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALP   83 (242)
T ss_dssp             CCCCCCHHHHHHHHHHHCCCCHHHHHHHHTTSSSGGGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSC
T ss_pred             CcccCCHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCC
Confidence            44667899999999974 67889999999887777778899999999999999999999999999999999999999987


Q ss_pred             CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCC
Q 023645          143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG  222 (279)
Q Consensus       143 ~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g  222 (279)
                      ++++|+++|+++++++.|+++++..|+.++++++++|+.+.++.+..+++.++||+||+|++...+..+++.+.++|+||
T Consensus        84 ~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG  163 (242)
T 3r3h_A           84 DDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPK  163 (242)
T ss_dssp             TTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEE
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCC
Confidence            68999999999999999999999999988899999999988776533222378999999999999999999999999999


Q ss_pred             cEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          223 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       223 G~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      |+|+++|++|+|.+.++...+..+.++++|++.+.++++++++++|++||+++|+||
T Consensus       164 G~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~  220 (242)
T 3r3h_A          164 GLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQPI  220 (242)
T ss_dssp             EEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESSSSCEEEEEEC
T ss_pred             eEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEccCceEEEEEc
Confidence            999999999999999988888889999999999999999999999999999999985

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=3.2e-36  Score=256.59  Aligned_cols=204  Identities=22%  Similarity=0.323  Sum_probs=187.0

Q ss_pred             ChhHHHHHHhccCChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCC---EEEEEcCccCHHHHHHHHHCCCCC
Q 023645           69 TPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQ---RCIEVGVYTGYSSLAIALVLPESG  145 (279)
Q Consensus        69 ~~~l~~Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~VLEiG~G~G~~t~~la~~~~~~~  145 (279)
                      .+.+.+|+.+..++++.+.++++.+....  .+.+.+..++++..++...+++   +|||||||+|++++++++.+++++
T Consensus         5 ~~~~~~y~~~~~~~~~~l~~~~~~a~~~~--~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   82 (221)
T 3dr5_A            5 FEYLRTYVESTTETDAAVARAREDAAEFG--LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNT   82 (221)
T ss_dssp             HHHHHHHHHTTSCCCHHHHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTS
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCC
Confidence            35678999998888999999999987764  4457999999999999988888   999999999999999999987789


Q ss_pred             EEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcE
Q 023645          146 CLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI  224 (279)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~  224 (279)
                      +|+++|+++++++.|+++++..|+. ++++++++|+.+.++.+.    +++||+||+|+....+..+++.+.++|+|||+
T Consensus        83 ~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~----~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~  158 (221)
T 3dr5_A           83 TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA----NDSYQLVFGQVSPMDLKALVDAAWPLLRRGGA  158 (221)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC----TTCEEEEEECCCTTTHHHHHHHHHHHEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc----CCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcE
Confidence            9999999999999999999999998 789999999988765431    47899999999999999999999999999999


Q ss_pred             EEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 023645          225 IVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK  278 (279)
Q Consensus       225 lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~  278 (279)
                      |+++|++|.|.+.++...+..+.++++|++++.++++++++++|+|||+++++|
T Consensus       159 lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~~~~~  212 (221)
T 3dr5_A          159 LVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVTK  212 (221)
T ss_dssp             EEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTCEEEEEE
T ss_pred             EEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccchHHHHHH
Confidence            999999999999998888888889999999999999999999999999999997

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=100.00  E-value=7.1e-35  Score=250.70  Aligned_cols=216  Identities=37%  Similarity=0.640  Sum_probs=192.0

Q ss_pred             ccCCCChhHHHHHHhcc---CChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHH
Q 023645           64 QVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV  140 (279)
Q Consensus        64 ~~~~~~~~l~~Y~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~  140 (279)
                      +....++.+++|+.++.   ++++.+.++++.+.....+.+.+++.+++++..++...++++|||||||+|+++.++++.
T Consensus        12 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~   91 (237)
T 3c3y_A           12 TGLLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALS   91 (237)
T ss_dssp             -CCBSCHHHHHHHHHHHTGGGSCHHHHHHHHHHTTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred             cccCchHHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHh
Confidence            45667899999999862   678999999999988777788999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC-CCCcEEEEEEeCCccchHHHHHHHHccC
Q 023645          141 LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLI  219 (279)
Q Consensus       141 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~-~~~~fDlI~id~~~~~~~~~l~~~~~~L  219 (279)
                      ++++++|+++|+++++++.|+++++..|+.++++++++|+.+.++.+..++ ..++||+||+|+++..+..+++.+.++|
T Consensus        92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L  171 (237)
T 3c3y_A           92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLV  171 (237)
T ss_dssp             SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHE
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhc
Confidence            887799999999999999999999999998889999999998877664432 1468999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCcccCcccCC-----hhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          220 RVGGIIVIDNVLWHGKVADQMVND-----AKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       220 k~gG~lv~dd~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      +|||+|+++|++|.|.+.++...+     .....+++|++.+.++++++++++|++||+++++|+
T Consensus       172 ~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~  236 (237)
T 3c3y_A          172 KVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRRL  236 (237)
T ss_dssp             EEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             CCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCceEEEEEc
Confidence            999999999999999988763222     135578999999999999999999999999999986

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=100.00  E-value=4.8e-35  Score=253.35  Aligned_cols=216  Identities=39%  Similarity=0.665  Sum_probs=192.2

Q ss_pred             ccCCCChhHHHHHHhc---cCChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHH
Q 023645           64 QVISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV  140 (279)
Q Consensus        64 ~~~~~~~~l~~Y~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~  140 (279)
                      +....++++++|+.++   .++++.+.++++++...+.+.|.+++.++.++..++...++++|||||||+|++++++++.
T Consensus        21 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~  100 (247)
T 1sui_A           21 KSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALA  100 (247)
T ss_dssp             CCSBSCHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHh
Confidence            4566889999999986   2678899999999988777788999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC-CCCcEEEEEEeCCccchHHHHHHHHccC
Q 023645          141 LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLI  219 (279)
Q Consensus       141 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~-~~~~fDlI~id~~~~~~~~~l~~~~~~L  219 (279)
                      ++++++|+++|+++++++.|+++++..|+.++++++++|+.+.++.+...+ ..++||+||+|+....+..+++.+.++|
T Consensus       101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~L  180 (247)
T 1sui_A          101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV  180 (247)
T ss_dssp             SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHB
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhC
Confidence            886789999999999999999999999998889999999998877653221 1368999999999889999999999999


Q ss_pred             CCCcEEEEeCCCCCCcccCcccCCh------hhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          220 RVGGIIVIDNVLWHGKVADQMVNDA------KTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       220 k~gG~lv~dd~~~~g~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      +|||+|++||++|.|.+.++...+.      ...++++|++.+.++++++++++|++||+++++|+
T Consensus       181 kpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~l~~k~  246 (247)
T 1sui_A          181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI  246 (247)
T ss_dssp             CTTCCEEEECTTGGGGGGCCTTSCCCHHHHHHHHHHHHHHHHHHTCTTBCCEEECSTTCEEEECBC
T ss_pred             CCCeEEEEecCCcCCcccCCCccchhhhhhHHHHHHHHHHHHHhhCCCeEEEEEecCCccEEEEEc
Confidence            9999999999999999987754332      24589999999999999999999999999999985

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=100.00  E-value=2.1e-34  Score=246.84  Aligned_cols=222  Identities=43%  Similarity=0.796  Sum_probs=196.5

Q ss_pred             ccccccccCCCChhHHHHHHhcc-CChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHH
Q 023645           58 EKYSNKQVISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLA  136 (279)
Q Consensus        58 ~~~~~~~~~~~~~~l~~Y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~  136 (279)
                      -.++.+....+++.+.+|+.+.. ++++.+.++++.+.....+.|.+.+.++.++..++...++++|||||||+|+++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~   89 (232)
T 3cbg_A           10 HGSMGKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALA   89 (232)
T ss_dssp             -----CCBTTSCHHHHHHHHHTSCCCCHHHHHHHHHTTTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHH
T ss_pred             ccccccccccchHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHH
Confidence            34566777889999999999975 57889999999987776667789999999999999988999999999999999999


Q ss_pred             HHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHH
Q 023645          137 IALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (279)
Q Consensus       137 la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~  216 (279)
                      +++.++++++|+++|+++++++.|+++++..++.++++++.+|+.+.++.+......++||+||+|+....+..+++.+.
T Consensus        90 la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~  169 (232)
T 3cbg_A           90 MALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGL  169 (232)
T ss_dssp             HHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGGGHHHHHHHHH
T ss_pred             HHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHHHHHHHHHHHH
Confidence            99988767899999999999999999999999988899999999887766542211178999999999889999999999


Q ss_pred             ccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          217 QLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       217 ~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      ++|+|||+|+++|+.|.|.+.++...+..+..+++|++.+.++++++++++|++||+++++|+
T Consensus       170 ~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~  232 (232)
T 3cbg_A          170 NLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK  232 (232)
T ss_dssp             HTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECSBTCEEEEEEC
T ss_pred             HHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEcCCeEEEEEeC
Confidence            999999999999999999999887778888899999999999999999999999999999986

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=100.00  E-value=4.7e-34  Score=242.58  Aligned_cols=218  Identities=43%  Similarity=0.774  Sum_probs=196.5

Q ss_pred             ccccCCCChhHHHHHHhcc-CChHHHHHHHHHHH-ccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHH
Q 023645           62 NKQVISVTPPLYDYILRNV-REPEILRQLREETA-GMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIAL  139 (279)
Q Consensus        62 ~~~~~~~~~~l~~Y~~~~~-~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~  139 (279)
                      ......+++.+.+|+.++. ++++.+.++++.+. ..+.+.+.+++..+.++..++...++.+|||||||+|.++..+++
T Consensus         5 ~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~   84 (225)
T 3tr6_A            5 SINTTLLTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGL   84 (225)
T ss_dssp             CCCSCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHCTTGGGSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCccccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHH
Confidence            3355668899999999975 46788999998887 777777899999999999999999999999999999999999999


Q ss_pred             HCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccC
Q 023645          140 VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI  219 (279)
Q Consensus       140 ~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~L  219 (279)
                      .++++++|+++|+++++++.|+++++..++.++++++++|+.+.++.+...+..++||+||++++...+..+++.+.++|
T Consensus        85 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L  164 (225)
T 3tr6_A           85 ALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLL  164 (225)
T ss_dssp             TCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHE
T ss_pred             hCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHhc
Confidence            88767899999999999999999999999988899999999888776532222278999999999888999999999999


Q ss_pred             CCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          220 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       220 k~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      +|||+|+++|++|.|.+.++...+....++++|++.+.++++++++++|++||+.+++|+
T Consensus       165 ~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~  224 (225)
T 3tr6_A          165 REGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK  224 (225)
T ss_dssp             EEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             CCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEcCCccEEEEEC
Confidence            999999999999999999888778888899999999999999999999999999999996

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=100.00  E-value=1.2e-32  Score=234.61  Aligned_cols=212  Identities=38%  Similarity=0.646  Sum_probs=191.7

Q ss_pred             CChhHHHHHHhcc-CChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCE
Q 023645           68 VTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC  146 (279)
Q Consensus        68 ~~~~l~~Y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~  146 (279)
                      ..+.+.+|+.++. ++++.+.++++.+.....+.+.+++..+.++..++...++++|||||||+|.++..+++.++.+++
T Consensus        17 ~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~   96 (229)
T 2avd_A           17 EDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGR   96 (229)
T ss_dssp             TTSHHHHHHHHTTCCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCE
T ss_pred             hHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCE
Confidence            5678899999874 678899999999988767778999999999999999999999999999999999999998876789


Q ss_pred             EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645          147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      |+++|+++++++.|+++++..++.++++++++|+.+.++.+...++.++||+||+|.....+..+++.+.++|+|||+++
T Consensus        97 v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv  176 (229)
T 2avd_A           97 VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILA  176 (229)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            99999999999999999999998888999999998877665432112689999999998889999999999999999999


Q ss_pred             EeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          227 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       227 ~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      ++|++|+|.+.++...+....++++|++.+.++++++++++|++||+++++|+
T Consensus       177 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dGl~~~~k~  229 (229)
T 2avd_A          177 VLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI  229 (229)
T ss_dssp             EECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             EECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEecCCceEEEEEC
Confidence            99999999998887777888899999999999999999999999999999985

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=100.00  E-value=1.2e-32  Score=233.64  Aligned_cols=209  Identities=31%  Similarity=0.506  Sum_probs=190.4

Q ss_pred             hhHHHHHHhcc-CChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEE
Q 023645           70 PPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLV  148 (279)
Q Consensus        70 ~~l~~Y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~  148 (279)
                      +.+.+|+.++. ++++.+.++++.+.....+.+.+++..++++..++...++.+|||||||+|.++.++++.++++++|+
T Consensus         8 ~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~   87 (223)
T 3duw_A            8 TAVDQYVSDVLIPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVV   87 (223)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCSCSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEE
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEE
Confidence            45779999875 56889999999998887888889999999999999999999999999999999999999987678999


Q ss_pred             EEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          149 ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       149 ~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++|+++++++.|+++++..++.++++++++|+.+.++.+...+ .++||+||+|+....+..+++.+.++|+|||+++++
T Consensus        88 ~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A           88 TLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEK-YEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT-CCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcC-CCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEe
Confidence            9999999999999999999998889999999988777654321 267999999999999999999999999999999999


Q ss_pred             CCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeec-----CCceEEEEEC
Q 023645          229 NVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPI-----GDGMTICQKR  279 (279)
Q Consensus       229 d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~-----~~G~~i~~~~  279 (279)
                      |+.|+|.+.++...+.....+++|++.+.++++++++++|+     +||+.+|++|
T Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~dG~~~~~~~  222 (223)
T 3duw_A          167 NVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAVVK  222 (223)
T ss_dssp             SCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEeccCCCCCCeeEEEEEe
Confidence            99999999988877888889999999999999999999999     9999999985

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=100.00  E-value=5.8e-32  Score=233.98  Aligned_cols=208  Identities=29%  Similarity=0.499  Sum_probs=186.9

Q ss_pred             ChhHHHHHHhcc-CChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEE
Q 023645           69 TPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCL  147 (279)
Q Consensus        69 ~~~l~~Y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v  147 (279)
                      .+.+.+|+.+.. .+++.+.++++.+.....+.+.+++..+.++..++...++++|||||||+|+++..+++.++++++|
T Consensus        12 ~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v   91 (248)
T 3tfw_A           12 WSAVDNYLIKALIPGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQL   91 (248)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCBSCCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEE
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEE
Confidence            345778998864 5678899999888877777778899999999999999999999999999999999999998767899


Q ss_pred             EEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          148 VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       148 ~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +++|+++++++.|+++++..++.++++++++|+.+.++.+.   +.++||+||+|+....+..+++.+.++|||||+|++
T Consensus        92 ~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~---~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~  168 (248)
T 3tfw_A           92 LTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG---ECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIG  168 (248)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC---SCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC---CCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEE
Confidence            99999999999999999999998889999999988766541   134899999999999999999999999999999999


Q ss_pred             eCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEe-ecC----CceEEEEEC
Q 023645          228 DNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMV-PIG----DGMTICQKR  279 (279)
Q Consensus       228 dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-p~~----~G~~i~~~~  279 (279)
                      +|++|.|.+.++...+..+.++++|++.+.++++++++++ |++    ||+.+|++|
T Consensus       169 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~DG~~i~~~~  225 (248)
T 3tfw_A          169 DNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGTKGWDGFTLAWVN  225 (248)
T ss_dssp             ECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECSTTCSEEEEEEEEC
T ss_pred             eCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCCCCCCCeeEEEEEe
Confidence            9999999999888778888899999999999999999988 676    999999986

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=100.00  E-value=3.3e-32  Score=233.15  Aligned_cols=207  Identities=23%  Similarity=0.367  Sum_probs=180.0

Q ss_pred             cCCCChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC
Q 023645           65 VISVTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE  143 (279)
Q Consensus        65 ~~~~~~~l~~Y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~  143 (279)
                      ...+++.+.+|+.+... +++.+.++++.+....  .+.+.+..+.++..++...++.+|||||||+|+++.++++..+ 
T Consensus        18 ~~~~~~~l~~yl~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-   94 (232)
T 3ntv_A           18 GSHMDDLNKKYLIDLHQHQNSSIEVLREFAEVNE--VPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD-   94 (232)
T ss_dssp             ---CHHHHHHHHHHHHGGGCCGGGGHHHHHHHTT--CCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCT-
T ss_pred             CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCC-
Confidence            34578899999998753 4567777777776553  3456899999999999999999999999999999999999665 


Q ss_pred             CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH-HHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCC
Q 023645          144 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK-ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG  222 (279)
Q Consensus       144 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~-~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g  222 (279)
                      +++|+++|+++++++.|+++++..++.++++++++|+.+.++ .+     +++||+||++.....+..+++.+.++|+||
T Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~fD~V~~~~~~~~~~~~l~~~~~~Lkpg  169 (232)
T 3ntv_A           95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN-----DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQ  169 (232)
T ss_dssp             TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT-----TSCEEEEEEETTSSSHHHHHHHHGGGEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc-----cCCccEEEEcCcHHHHHHHHHHHHHhcCCC
Confidence            789999999999999999999999998789999999998777 55     579999999999999999999999999999


Q ss_pred             cEEEEeCCCCCCcccCccc-CC----hhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          223 GIIVIDNVLWHGKVADQMV-ND----AKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       223 G~lv~dd~~~~g~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      |+|+++|++|.|.+.++.. .+    ....++++|++.+.++++++++++|++||+.+++||
T Consensus       170 G~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~i~~k~  231 (232)
T 3ntv_A          170 GLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKG  231 (232)
T ss_dssp             EEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECSTTCEEEEEEC
T ss_pred             eEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEcCCceEEEEEC
Confidence            9999999999999887654 22    234589999999999999999999999999999996

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=100.00  E-value=6.2e-31  Score=225.89  Aligned_cols=215  Identities=42%  Similarity=0.753  Sum_probs=190.0

Q ss_pred             cCCCChhHHHHHHhcc-CChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC
Q 023645           65 VISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE  143 (279)
Q Consensus        65 ~~~~~~~l~~Y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~  143 (279)
                      ....++.+.+|+.... ++++.+.++++.+.....+.+.+.+..+.++..++...++.+|||||||+|+++..+++.+++
T Consensus         5 ~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~   84 (239)
T 2hnk_A            5 NISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPE   84 (239)
T ss_dssp             SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHTC---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCT
T ss_pred             cccchHHHHHHHHHccCCCCHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCC
Confidence            4567788999999974 678899999999988877778999999999999999889999999999999999999999876


Q ss_pred             CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC---------CCC--CcEEEEEEeCCccchHHHH
Q 023645          144 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN---------GEA--SSYDFAFVDAEKRMYQEYF  212 (279)
Q Consensus       144 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~---------~~~--~~fDlI~id~~~~~~~~~l  212 (279)
                      +++|+++|+++.+++.|+++++..++.++++++.+|+.+.++.+...         .+.  ++||+||++.....+..++
T Consensus        85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l  164 (239)
T 2hnk_A           85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYY  164 (239)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHH
Confidence            78999999999999999999999998878999999998866654221         111  6899999999888899999


Q ss_pred             HHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          213 ELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       213 ~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      +.+.++|+|||++++++++|.|.+.++......+..+++|++.+..+++++++++|+++|+.+++|+
T Consensus       165 ~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~  231 (239)
T 2hnk_A          165 PLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR  231 (239)
T ss_dssp             HHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEEcCCceEeeeeh
Confidence            9999999999999999999999988877777778899999999999999999999999999999985

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.97  E-value=1.4e-30  Score=219.33  Aligned_cols=203  Identities=19%  Similarity=0.278  Sum_probs=172.1

Q ss_pred             CChhHHHHHHhcc-CChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCE
Q 023645           68 VTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC  146 (279)
Q Consensus        68 ~~~~l~~Y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~  146 (279)
                      ..+.+++|+.++. ++++.+.++++.+....  .+.+.+..+.++..++...++++|||||||+|+++.++++.++++++
T Consensus         6 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~   83 (210)
T 3c3p_A            6 VDSRIGAYLDGLLPEADPVVAAMEQIARERN--IPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSR   83 (210)
T ss_dssp             BCHHHHHHHHHTSCSCCHHHHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCE
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCE
Confidence            5677899999876 45788999998887653  45689999999999988888999999999999999999998876789


Q ss_pred             EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645          147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      |+++|+++++++.|+++++..++.++++++++|+.+.++..     .+ ||+||++.....+..+++.+.++|+|||+++
T Consensus        84 v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv  157 (210)
T 3c3p_A           84 VVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-----RD-IDILFMDCDVFNGADVLERMNRCLAKNALLI  157 (210)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-----CS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-----CC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEE
Confidence            99999999999999999999998888999999998765543     45 9999999988889999999999999999999


Q ss_pred             EeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          227 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       227 ~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      ++|+.|.|.+.++ ........+++|++.+.+++++.++++|+++|+.+++|+
T Consensus       158 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~~~~~~  209 (210)
T 3c3p_A          158 AVNALRRGSVAES-HEDPETAALREFNHHLSRRRDFFTTIVPVGNGVLLGYRL  209 (210)
T ss_dssp             EESSSSCC-------------CCCHHHHHHTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             EECccccCcccCc-ccchHHHHHHHHHHHHhhCCCeEEEEEecCCceEEEEeC
Confidence            9999999988755 444555678999999999999999999999999999986

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.96  E-value=8.4e-28  Score=203.97  Aligned_cols=195  Identities=21%  Similarity=0.373  Sum_probs=164.7

Q ss_pred             ChhHHHHHHhccC--Ch-HHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCC
Q 023645           69 TPPLYDYILRNVR--EP-EILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESG  145 (279)
Q Consensus        69 ~~~l~~Y~~~~~~--~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~  145 (279)
                      ..++++|+.++..  ++ .+++.+.+...... ..+.+++..++++..++...++++|||||||+|.++.++++.+++++
T Consensus         6 ~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   84 (221)
T 3u81_A            6 EQRILRYVQQNAKPGDPQSVLEAIDTYCTQKE-WAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGA   84 (221)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHT-CGGGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcC-cCcccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCC
Confidence            4578899998753  23 46777777776543 34789999999999999999999999999999999999999887678


Q ss_pred             EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHH---HHHHHHccCCCC
Q 023645          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE---YFELLLQLIRVG  222 (279)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~---~l~~~~~~Lk~g  222 (279)
                      +|+++|+++++++.|+++++..++.++++++++|+.+.++.+....+.++||+||+|+....+..   +++.+ ++|+||
T Consensus        85 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lkpg  163 (221)
T 3u81_A           85 RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKG  163 (221)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTT
T ss_pred             EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCC
Confidence            99999999999999999999999988899999999877665421111268999999998777665   44444 999999


Q ss_pred             cEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEee-------cCCceEEEEEC
Q 023645          223 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVP-------IGDGMTICQKR  279 (279)
Q Consensus       223 G~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp-------~~~G~~i~~~~  279 (279)
                      |+|+++|+.|+|.              ++|++++.++++++++.+|       ++||+.+++++
T Consensus       164 G~lv~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~  213 (221)
T 3u81_A          164 TVLLADNVIVPGT--------------PDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  213 (221)
T ss_dssp             CEEEESCCCCCCC--------------HHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred             eEEEEeCCCCcch--------------HHHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence            9999999999875              6799999999999999999       89999999875

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.96  E-value=9.8e-28  Score=204.94  Aligned_cols=206  Identities=28%  Similarity=0.494  Sum_probs=164.7

Q ss_pred             CChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCE
Q 023645           68 VTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC  146 (279)
Q Consensus        68 ~~~~l~~Y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~  146 (279)
                      .++.+++|+.++.. +++.+.++++.+....  .+.+.+....++..++...++.+|||||||+|..+..+++.++ +++
T Consensus         4 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~   80 (233)
T 2gpy_A            4 IEERLKHYLEKQIPARDQYIEQMEREAHEQQ--VPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EAT   80 (233)
T ss_dssp             -CHHHHHHHHTTCCCCCHHHHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCE
T ss_pred             cHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCE
Confidence            56788999999864 5888999988876553  4468999999999999988999999999999999999999987 789


Q ss_pred             EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645          147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      |+++|+++.+++.|+++++..++.++++++.+|+.+.++....   +++||+||++.....+..+++.+.++|+|||+++
T Consensus        81 v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv  157 (233)
T 2gpy_A           81 IVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLEL---YPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLIL  157 (233)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTT---SCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhccc---CCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            9999999999999999999999887899999999876654411   3689999999988888999999999999999999


Q ss_pred             EeCCCCCCcccCccc----CChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023645          227 IDNVLWHGKVADQMV----NDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  279 (279)
Q Consensus       227 ~dd~~~~g~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~~  279 (279)
                      ++|++|.|.+.++..    .......+++|++.+.+++.+.++++|+++|+.+++|+
T Consensus       158 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~dG~~~~~~~  214 (233)
T 2gpy_A          158 SDNVLFRGLVAETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKR  214 (233)
T ss_dssp             EETTTC-------------------------CTTTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             EEcCCcCCccCCccccccchhHHHHHHHHHHHHHHhCCCeEEEEEEcCCeEEEEEEc
Confidence            999999997765431    11223568889999999999999999999999999985

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.79  E-value=2.2e-18  Score=143.51  Aligned_cols=151  Identities=16%  Similarity=0.118  Sum_probs=117.2

Q ss_pred             cCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC--CCcE
Q 023645           96 MRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKV  173 (279)
Q Consensus        96 ~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~v  173 (279)
                      .+.+.+.+++.++++|..  ...++++||||||  |++|+++++. + +++|+++|.+++..+.|+++++.+|+  .+++
T Consensus         9 ~~~P~~~v~~~~~~~L~~--~l~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I   82 (202)
T 3cvo_A            9 QMRPELTMPPAEAEALRM--AYEEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEV   82 (202)
T ss_dssp             CCCCCCCSCHHHHHHHHH--HHHHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEE
T ss_pred             CCCCCccCCHHHHHHHHH--HhhCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCce
Confidence            445677899999999988  4457899999998  6899999984 4 68999999999999999999999998  8899


Q ss_pred             EEEEcChhhH--------------HHHHH----hCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          174 KIKHGLAADS--------------LKALI----LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       174 ~~~~gd~~~~--------------l~~~~----~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      +++.+|+.+.              ++...    ...+.++||+||+|+.+..  .++..+.++|+|||+|++||+.+.+.
T Consensus        83 ~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~--~~~~~~l~~l~~GG~Iv~DNv~~r~~  160 (202)
T 3cvo_A           83 NIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRV--GCALATAFSITRPVTLLFDDYSQRRW  160 (202)
T ss_dssp             EEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHH--HHHHHHHHHCSSCEEEEETTGGGCSS
T ss_pred             EEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCch--hHHHHHHHhcCCCeEEEEeCCcCCcc
Confidence            9999996543              22211    1111378999999998663  77778889999999999999876654


Q ss_pred             ccCcccCChhhHHHHHHHHHhhhCCCeEE
Q 023645          236 VADQMVNDAKTISIRNFNKNLMEDERVSI  264 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  264 (279)
                      -.          .+.+|.+.+...++.-.
T Consensus       161 y~----------~v~~~~~~~~~~~~~a~  179 (202)
T 3cvo_A          161 QH----------QVEEFLGAPLMIGRLAA  179 (202)
T ss_dssp             GG----------GGHHHHCCCEEETTEEE
T ss_pred             hH----------HHHHHHhHHhhcCceEE
Confidence            21          24667666655555443

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.73  E-value=7.7e-18  Score=147.30  Aligned_cols=160  Identities=13%  Similarity=0.179  Sum_probs=125.7

Q ss_pred             CCCHHHHHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHCC----CCCEEEEEeCChh------------------
Q 023645          102 QVSPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDAR------------------  155 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~----~~~~~VLEiG~G~G~~t~~la~~~~----~~~~v~~iD~s~~------------------  155 (279)
                      .+.......+..+++.    ..++.|||+||+.|+++++++..++    ++.+|+++|..+.                  
T Consensus        85 mv~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~  164 (282)
T 2wk1_A           85 MIGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALH  164 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGG
T ss_pred             ccCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccc
Confidence            3556777777777765    4588999999999999999988763    2678999996431                  


Q ss_pred             --------HHHHHHHHHHHhCCC-CcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCc-cchHHHHHHHHccCCCCcEE
Q 023645          156 --------SLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-RMYQEYFELLLQLIRVGGII  225 (279)
Q Consensus       156 --------~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~-~~~~~~l~~~~~~Lk~gG~l  225 (279)
                              ..+.+++++++.|+. ++++++.|++.+.++.+.    .++||+||+|+++ ..+..+++.+.++|+|||+|
T Consensus       165 ~~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~----~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiI  240 (282)
T 2wk1_A          165 RRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAP----IDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYV  240 (282)
T ss_dssp             GGHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCC----CCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCC----CCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEE
Confidence                    467789999999994 889999999998877541    4689999999986 45778999999999999999


Q ss_pred             EEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 023645          226 VIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK  278 (279)
Q Consensus       226 v~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~  278 (279)
                      ++||+.|         ....+.++++|++.    .++...++++..+...-||
T Consensus       241 v~DD~~~---------~~G~~~Av~Ef~~~----~~i~~~i~~~~~~~v~~rk  280 (282)
T 2wk1_A          241 IVDDYMM---------CPPCKDAVDEYRAK----FDIADELITIDRDGVYWQR  280 (282)
T ss_dssp             EESSCTT---------CHHHHHHHHHHHHH----TTCCSCCEECSSSCEEEEC
T ss_pred             EEcCCCC---------CHHHHHHHHHHHHh----cCCceEEEEecCEEEEEEe
Confidence            9999864         12235677777644    4566778888776665555

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.72  E-value=2.4e-17  Score=146.90  Aligned_cols=148  Identities=23%  Similarity=0.356  Sum_probs=114.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--CC-CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~-~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..+++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...  ++ ..+++++.+|+.+.++..     .+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-----~~  180 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH-----KN  180 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC-----TT
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc-----CC
Confidence            4578999999999999999998654 689999999999999999988653  33 467999999998876642     57


Q ss_pred             cEEEEEEeCCc------cch-HHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEe
Q 023645          195 SYDFAFVDAEK------RMY-QEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMV  267 (279)
Q Consensus       195 ~fDlI~id~~~------~~~-~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  267 (279)
                      +||+|++|...      ..+ .++++.+.++|+|||++++++-    ...   ........+.++++.+..+.++..+.+
T Consensus       181 ~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~----~~~---~~~~~~~~~~~~l~~vF~~v~~~~~~i  253 (314)
T 2b2c_A          181 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE----SVW---LHLPLIAHLVAFNRKIFPAVTYAQSIV  253 (314)
T ss_dssp             CEEEEEECCC-------------HHHHHHHHEEEEEEEEEECC----CTT---TCHHHHHHHHHHHHHHCSEEEEEEEEC
T ss_pred             CceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC----Ccc---cCHHHHHHHHHHHHHHCCcceEEEEEe
Confidence            89999998742      112 6889999999999999999862    111   123345567888888877777888888


Q ss_pred             ec---CC-ceEEEEE
Q 023645          268 PI---GD-GMTICQK  278 (279)
Q Consensus       268 p~---~~-G~~i~~~  278 (279)
                      |.   |+ |+.+|.|
T Consensus       254 P~~~~g~~g~~~ask  268 (314)
T 2b2c_A          254 STYPSGSMGYLICAK  268 (314)
T ss_dssp             TTSGGGEEEEEEEES
T ss_pred             cCcCCCceEEEEEeC
Confidence            87   45 8888876

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.71  E-value=4.2e-17  Score=144.75  Aligned_cols=147  Identities=18%  Similarity=0.341  Sum_probs=116.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH--hCC-CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGV-SHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g~-~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..+++|||||||+|..+..+++..+ ..+|+++|+++++++.|++++..  .++ .++++++.+|+.+.++..     .+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-----~~  167 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-----QD  167 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-----SS
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC-----CC
Confidence            4578999999999999999998644 57999999999999999999875  344 467999999998876542     57


Q ss_pred             cEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEeC-CCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEE
Q 023645          195 SYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDN-VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM  266 (279)
Q Consensus       195 ~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~dd-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  266 (279)
                      +||+||+|....       ...++++.+.++|+|||++++++ ..|..        ......++++++.+..+.++..+.
T Consensus       168 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~--------~~~~~~~~~~l~~~f~~v~~~~~~  239 (304)
T 2o07_A          168 AFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLH--------LDLIKEMRQFCQSLFPVVAYAYCT  239 (304)
T ss_dssp             CEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTC--------HHHHHHHHHHHHHHCSEEEEEEEE
T ss_pred             CceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccc--------hHHHHHHHHHHHHhCCCceeEEEE
Confidence            899999987632       23568999999999999999987 33432        133456888888888888888888


Q ss_pred             eecC----CceEEEEE
Q 023645          267 VPIG----DGMTICQK  278 (279)
Q Consensus       267 lp~~----~G~~i~~~  278 (279)
                      +|..    .|+.+|.|
T Consensus       240 vP~~~~g~~g~~~as~  255 (304)
T 2o07_A          240 IPTYPSGQIGFMLCSK  255 (304)
T ss_dssp             CTTSGGGEEEEEEEES
T ss_pred             eccccCcceEEEEEeC
Confidence            8873    47888875

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.71  E-value=3.4e-16  Score=137.41  Aligned_cols=108  Identities=15%  Similarity=0.096  Sum_probs=92.9

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .++...++.+|||||||+|..+..++...+ +++|+++|+++++++.|+++++..|+ ++++++++|+.+. +       
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~-------  185 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D-------  185 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G-------
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C-------
Confidence            356677899999999999876644444444 68999999999999999999999999 7899999999864 2       


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +++||+||+++...+...+++.+.+.|||||.|++.+.
T Consensus       186 d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          186 GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            47899999988877888999999999999999999874

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.71  E-value=1e-16  Score=134.80  Aligned_cols=163  Identities=13%  Similarity=0.090  Sum_probs=119.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC----cEEEEEc
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH----KVKIKHG  178 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~----~v~~~~g  178 (279)
                      +.+...+.+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...++.+    +++++++
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (219)
T 3jwg_A           13 LNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS   91 (219)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred             chHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence            3445555566666667788999999999999999998764 5799999999999999999998777654    7999999


Q ss_pred             ChhhHHHHHHhCCCCCcEEEEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCCcccC---------ccc-CC
Q 023645          179 LAADSLKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD---------QMV-ND  243 (279)
Q Consensus       179 d~~~~l~~~~~~~~~~~fDlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~---------~~~-~~  243 (279)
                      |+.... ..     .++||+|++.....     ....+++.+.+.|||||+++.......+....         ... ..
T Consensus        92 d~~~~~-~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (219)
T 3jwg_A           92 SLVYRD-KR-----FSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFE  165 (219)
T ss_dssp             CSSSCC-GG-----GTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTS
T ss_pred             cccccc-cc-----cCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceee
Confidence            984321 11     47899999876522     23578999999999999887754332211110         000 01


Q ss_pred             hhhHHHHHHHHHhhhCCCeEEEEeecCCc
Q 023645          244 AKTISIRNFNKNLMEDERVSISMVPIGDG  272 (279)
Q Consensus       244 ~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (279)
                      -....+++|.+.+.+..++++...+++++
T Consensus       166 ~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~  194 (219)
T 3jwg_A          166 WTRKEFQTWAVKVAEKYGYSVRFLQIGEI  194 (219)
T ss_dssp             BCHHHHHHHHHHHHHHHTEEEEEEEESCC
T ss_pred             ecHHHHHHHHHHHHHHCCcEEEEEecCCc
Confidence            13446778888888888999998887765

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.70  E-value=1e-16  Score=134.76  Aligned_cols=163  Identities=15%  Similarity=0.157  Sum_probs=119.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC----cEEEEEc
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH----KVKIKHG  178 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~----~v~~~~g  178 (279)
                      +.+.....+...+...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...++..    +++++++
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (217)
T 3jwh_A           13 LNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG   91 (217)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEEC
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeC
Confidence            3445555666666667788999999999999999998654 5799999999999999999998777764    7999999


Q ss_pred             ChhhHHHHHHhCCCCCcEEEEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCCccc---------Cccc-CC
Q 023645          179 LAADSLKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHGKVA---------DQMV-ND  243 (279)
Q Consensus       179 d~~~~l~~~~~~~~~~~fDlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~---------~~~~-~~  243 (279)
                      |+... +..     .++||+|++.....     ....+++.+.++|||||++++......+...         .... ..
T Consensus        92 d~~~~-~~~-----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (217)
T 3jwh_A           92 ALTYQ-DKR-----FHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFE  165 (217)
T ss_dssp             CTTSC-CGG-----GCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSC
T ss_pred             Ccccc-ccc-----CCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccc
Confidence            98432 111     47899999876532     3468899999999999988875443111100         0000 11


Q ss_pred             hhhHHHHHHHHHhhhCCCeEEEEeecCCc
Q 023645          244 AKTISIRNFNKNLMEDERVSISMVPIGDG  272 (279)
Q Consensus       244 ~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (279)
                      -....+++|.+.+.++.+|+++..++++.
T Consensus       166 ~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~  194 (217)
T 3jwh_A          166 WTRSQFQNWANKITERFAYNVQFQPIGEA  194 (217)
T ss_dssp             BCHHHHHHHHHHHHHHSSEEEEECCCSCC
T ss_pred             cCHHHHHHHHHHHHHHcCceEEEEecCCc
Confidence            13446788888888899999999888764

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.70  E-value=3.4e-16  Score=130.97  Aligned_cols=119  Identities=18%  Similarity=0.207  Sum_probs=97.6

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      ...+.....+...+...++.+|||+|||+|..+..+++.   +++|+++|+++++++.|+++++..++.++++++++|+.
T Consensus        38 ~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~  114 (204)
T 3njr_A           38 ITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAP  114 (204)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred             CCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchh
Confidence            344444444555555667789999999999999999987   57999999999999999999999998867999999998


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +.++.      ..+||+||++... ... +++.+.+.|+|||.+++..+.
T Consensus       115 ~~~~~------~~~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          115 AALAD------LPLPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             GGGTT------SCCCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred             hhccc------CCCCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEEecC
Confidence            75432      3579999998754 344 899999999999999997653

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.70  E-value=3.8e-16  Score=130.08  Aligned_cols=121  Identities=16%  Similarity=0.278  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      ...+....+...+...++.+|||+|||+|..+..+++..+ .++|+++|+++++++.|+++++..++ ++++++++|+.+
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~  101 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPE  101 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhh
Confidence            3444444444555566788999999999999999999875 68999999999999999999999888 569999999976


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      .++.      .++||+|+++........+++.+.+.|+|||.+++....
T Consensus       102 ~~~~------~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          102 GLDD------LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             TCTT------SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             hhhc------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence            5432      367999999987778889999999999999999997554

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.69  E-value=6.5e-16  Score=127.22  Aligned_cols=107  Identities=19%  Similarity=0.218  Sum_probs=90.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..+..++.. + ..+|+++|+++++++.|+++++..++ ++++++++|+.+.++..    .+++||
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~----~~~~fD  115 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAG----TTSPVD  115 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHC----CSSCCS
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhc----cCCCcc
Confidence            46789999999999999987774 2 46899999999999999999999988 56999999998776543    147899


Q ss_pred             EEEEeCCcc----chHHHHHHHHc--cCCCCcEEEEeCCC
Q 023645          198 FAFVDAEKR----MYQEYFELLLQ--LIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~~~----~~~~~l~~~~~--~Lk~gG~lv~dd~~  231 (279)
                      +|+++.+..    .....++.+.+  +|+|||++++....
T Consensus       116 ~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          116 LVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             EEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            999997643    36778888888  99999999997654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.69  E-value=5.3e-17  Score=138.99  Aligned_cols=116  Identities=16%  Similarity=0.296  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHH---CCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      +....++..++...++.+|||||||+|+++..+++.   +.++++|+++|+++++++.|+      ++.++++++++|+.
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~  140 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCS  140 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcch
Confidence            777888888887778899999999999999999987   444789999999999988887      22357999999997


Q ss_pred             hH--HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHc-cCCCCcEEEEeCC
Q 023645          182 DS--LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ-LIRVGGIIVIDNV  230 (279)
Q Consensus       182 ~~--l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~-~Lk~gG~lv~dd~  230 (279)
                      +.  ++..    ...+||+|+++..+..+..++..+.+ +|||||+|+++|+
T Consensus       141 ~~~~l~~~----~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          141 DLTTFEHL----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             CSGGGGGG----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             hHHHHHhh----ccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            64  3322    12479999999887788889999996 9999999999987

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.68  E-value=3.3e-16  Score=136.06  Aligned_cols=116  Identities=13%  Similarity=0.241  Sum_probs=94.2

Q ss_pred             HHHHHHHh--hcCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645          109 QLLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (279)
Q Consensus       109 ~~l~~l~~--~~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (279)
                      .++..++.  ..++.+|||||||+|..+..+++.++ ++++|+|+|+|+.|++.|+++++..+...+++++++|+.+. +
T Consensus        58 ~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~-~  136 (261)
T 4gek_A           58 SMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A  136 (261)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC-C
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc-c
Confidence            33444443  34678999999999999999998864 36799999999999999999999888888899999999754 1


Q ss_pred             HHHhCCCCCcEEEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          186 ALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       186 ~~~~~~~~~~fDlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                             .++||+|++....     .+...+++++.+.|||||++++.+...
T Consensus       137 -------~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          137 -------IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             -------CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             -------ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence                   3679999987542     234568999999999999999876554

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.68  E-value=3.5e-16  Score=127.23  Aligned_cols=116  Identities=12%  Similarity=0.182  Sum_probs=94.2

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~  188 (279)
                      .++..+....++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+++++..++.++++++.+|+.+.++.. 
T Consensus        21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-   97 (177)
T 2esr_A           21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-   97 (177)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB-
T ss_pred             HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh-
Confidence            33333333456789999999999999999886 3 46999999999999999999999888778999999998866544 


Q ss_pred             hCCCCCcEEEEEEeCCc--cchHHHHHHHH--ccCCCCcEEEEeCCC
Q 023645          189 LNGEASSYDFAFVDAEK--RMYQEYFELLL--QLIRVGGIIVIDNVL  231 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~~--~~~~~~l~~~~--~~Lk~gG~lv~dd~~  231 (279)
                          .++||+|+++.+.  ......++.+.  ++|+|||++++....
T Consensus        98 ----~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A           98 ----TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             ----CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             ----cCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence                4679999999773  44566777776  999999999997544

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.67  E-value=2.4e-16  Score=127.89  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=94.6

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      ...+...+...++.+|||+|||+|..+..+++..+ +.+|+++|+++.+++.|+++++..+..+++ ++++|+.+.++..
T Consensus        14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~   91 (178)
T 3hm2_A           14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV   91 (178)
T ss_dssp             HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC
T ss_pred             HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc
Confidence            33344444556677999999999999999999875 689999999999999999999998887678 8889987654421


Q ss_pred             HhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          188 ILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                           .++||+|++...... ..+++.+.+.|+|||.+++....
T Consensus        92 -----~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           92 -----PDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             -----CSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             -----CCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeec
Confidence                 378999999876554 67899999999999999997654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.67  E-value=5e-16  Score=138.46  Aligned_cols=149  Identities=15%  Similarity=0.140  Sum_probs=110.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH--hC-C-CCcEEEEEcChhhHHHHHHhCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AG-V-SHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g-~-~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ..+++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++..  .+ + ..+++++.+|+.+.++..     .
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----~  149 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-----E  149 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-----C
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc-----C
Confidence            4678999999999999999998654 67999999999999999998865  22 2 457999999998876553     5


Q ss_pred             CcEEEEEEeCCccc----------hHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeE
Q 023645          194 SSYDFAFVDAEKRM----------YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS  263 (279)
Q Consensus       194 ~~fDlI~id~~~~~----------~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  263 (279)
                      ++||+|++|.....          ..++++.+.+.|+|||++++...    ....  ........+.+.++.+..+..+.
T Consensus       150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~----~~~~--~~~~~~~~~~~~l~~~F~~v~~~  223 (314)
T 1uir_A          150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG----MILL--THHRVHPVVHRTVREAFRYVRSY  223 (314)
T ss_dssp             CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE----EECC-----CHHHHHHHHHHTTCSEEEEE
T ss_pred             CCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc----Cccc--cCHHHHHHHHHHHHHHCCceEEE
Confidence            78999999976433          47899999999999999999521    1110  11123334555555555555566


Q ss_pred             EEEeecCCc---eEEEEE
Q 023645          264 ISMVPIGDG---MTICQK  278 (279)
Q Consensus       264 ~~~lp~~~G---~~i~~~  278 (279)
                      .+.+|..+|   +.+|.|
T Consensus       224 ~~~vP~~~g~~~~~~as~  241 (314)
T 1uir_A          224 KNHIPGFFLNFGFLLASD  241 (314)
T ss_dssp             EEEEGGGTEEEEEEEEES
T ss_pred             EEecCCCCCeEEEEEEEC
Confidence            677888766   567765

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.66  E-value=1.6e-15  Score=124.15  Aligned_cols=135  Identities=13%  Similarity=0.138  Sum_probs=97.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..+..+++.   +++|+++|+++++++.|+++++..++ +++++++++..+.....     +++||
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~-----~~~fD   91 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYV-----REPIR   91 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTC-----CSCEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhc-----cCCcC
Confidence            35679999999999999999986   57999999999999999999999988 56999997775432111     57899


Q ss_pred             EEEEeCC------------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEE
Q 023645          198 FAFVDAE------------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS  265 (279)
Q Consensus       198 lI~id~~------------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  265 (279)
                      +|+++..            .......++.+.+.|||||.+++.  .|.+...    .......+.+|.+.+.. ..+...
T Consensus        92 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~--~~~~~~~----~~~~~~~~~~~~~~l~~-~~~~~~  164 (185)
T 3mti_A           92 AAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM--IYYGHDG----GDMEKDAVLEYVIGLDQ-RVFTAM  164 (185)
T ss_dssp             EEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEE--EC----------CHHHHHHHHHHHHSCT-TTEEEE
T ss_pred             EEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE--EeCCCCC----CHHHHHHHHHHHHhCCC-ceEEEE
Confidence            9998731            133456789999999999999984  3444321    12333456666666533 346655


Q ss_pred             Eee
Q 023645          266 MVP  268 (279)
Q Consensus       266 ~lp  268 (279)
                      ...
T Consensus       165 ~~~  167 (185)
T 3mti_A          165 LYQ  167 (185)
T ss_dssp             EEE
T ss_pred             Eeh
Confidence            444

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.66  E-value=5.2e-16  Score=133.44  Aligned_cols=119  Identities=13%  Similarity=0.234  Sum_probs=98.0

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      ..++..+....++.+|||||||+|..+..+++..+  ++|+++|+++.+++.|++++...++.++++++++|+.+.. . 
T Consensus        35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~-  110 (257)
T 3f4k_A           35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP-F-  110 (257)
T ss_dssp             HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS-S-
T ss_pred             HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-C-
Confidence            33343343455678999999999999999999875  4999999999999999999999999888999999996432 1 


Q ss_pred             HhCCCCCcEEEEEEeCCc--cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          188 ILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~~--~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                          .+++||+|++....  -+...+++.+.++|+|||++++.+..|..
T Consensus       111 ----~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  155 (257)
T 3f4k_A          111 ----QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFT  155 (257)
T ss_dssp             ----CTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESS
T ss_pred             ----CCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence                15799999987642  25778999999999999999999876554

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.66  E-value=1.1e-15  Score=131.35  Aligned_cols=123  Identities=21%  Similarity=0.223  Sum_probs=100.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      ..+.....+...+...++.+|||||||+|..+..+++..  +.+|+++|+++.+++.|+++++..++.++++++++|+.+
T Consensus        20 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~   97 (256)
T 1nkv_A           20 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   97 (256)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh
Confidence            345555555555566678899999999999999999886  469999999999999999999999988789999999976


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          183 SLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      ...       +++||+|++...   ..+...+++++.++|||||.+++.+..|..
T Consensus        98 ~~~-------~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~  145 (256)
T 1nkv_A           98 YVA-------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQ  145 (256)
T ss_dssp             CCC-------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETT
T ss_pred             CCc-------CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccC
Confidence            421       478999998654   235678999999999999999998766543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.66  E-value=9e-16  Score=134.69  Aligned_cols=145  Identities=17%  Similarity=0.179  Sum_probs=108.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--CC--------CCcEEEEEcChhhHHHHH
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV--------SHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~--------~~~v~~~~gd~~~~l~~~  187 (279)
                      ..+++|||||||+|..+..+++. + ..+|+++|+++.+++.|++++ ..  ++        ..+++++.+|+.+.++. 
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-  149 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-  149 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-
Confidence            45789999999999999999987 5 679999999999999999988 43  32        45799999999877653 


Q ss_pred             HhCCCCCcEEEEEEeCCc-----cc--hHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCC
Q 023645          188 ILNGEASSYDFAFVDAEK-----RM--YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDE  260 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~~-----~~--~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  260 (279)
                           .++||+|++|...     ..  ..++++.+.+.|+|||+++++...    .   .........+.+.++.+..+.
T Consensus       150 -----~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~----~---~~~~~~~~~~~~~l~~~f~~v  217 (281)
T 1mjf_A          150 -----NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS----V---YLFTDELISAYKEMKKVFDRV  217 (281)
T ss_dssp             -----CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE----T---TTSHHHHHHHHHHHHHHCSEE
T ss_pred             -----cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC----c---ccCHHHHHHHHHHHHHHCCce
Confidence                 3689999999752     11  367899999999999999997321    1   112233345566666665555


Q ss_pred             CeEEEEeecCCc---eEEEEE
Q 023645          261 RVSISMVPIGDG---MTICQK  278 (279)
Q Consensus       261 ~~~~~~lp~~~G---~~i~~~  278 (279)
                      .+..+.+|..+|   +.+|.|
T Consensus       218 ~~~~~~vP~~~g~~~~~~as~  238 (281)
T 1mjf_A          218 YYYSFPVIGYASPWAFLVGVK  238 (281)
T ss_dssp             EEEEECCTTSSSSEEEEEEEE
T ss_pred             EEEEEecCCCCceEEEEEeeC
Confidence            566677887655   777776

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.65  E-value=1.1e-16  Score=136.86  Aligned_cols=111  Identities=17%  Similarity=0.177  Sum_probs=89.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|.++.++++..+  .++|+||+++++++.|+++.+..+.  +++++.+|+.+.+..+    .+++||
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~----~~~~FD  130 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTL----PDGHFD  130 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGS----CTTCEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccc----cccCCc
Confidence            3567999999999999999987654  5899999999999999998886554  5899999997665433    257899


Q ss_pred             EEEEeCC--------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 023645          198 FAFVDAE--------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (279)
Q Consensus       198 lI~id~~--------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~  236 (279)
                      .|+.|..        ..+...+++++.++|||||++++.+....+..
T Consensus       131 ~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~  177 (236)
T 3orh_A          131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGEL  177 (236)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHH
T ss_pred             eEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhh
Confidence            9998864        22356788999999999999999876655543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.65  E-value=3.2e-15  Score=123.56  Aligned_cols=140  Identities=11%  Similarity=0.163  Sum_probs=103.1

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|+++++..++.++++++++|+.+.....     +++|
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~f   94 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI-----DCPV   94 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC-----CSCE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc-----cCCc
Confidence            34667999999999999999999875467999999999999999999999988778999999987653222     5789


Q ss_pred             EEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEE
Q 023645          197 DFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSI  264 (279)
Q Consensus       197 DlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  264 (279)
                      |+|+++.+.            .....+++.+.++|+|||.+++..  |.+..    ........+.+|.+.+ ...++..
T Consensus        95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~--~~~~~----~~~~~~~~~~~~~~~l-~~~~~~v  167 (197)
T 3eey_A           95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI--YYGGD----TGFEEKEKVLEFLKGV-DQKKFIV  167 (197)
T ss_dssp             EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE--CCBTT----TBSHHHHHHHHHHTTS-CTTTEEE
T ss_pred             eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE--ccCCC----CcHHHHHHHHHHHHhC-CCCcEEE
Confidence            999988632            134578999999999999999854  33321    1122333445554443 2345665


Q ss_pred             EEee
Q 023645          265 SMVP  268 (279)
Q Consensus       265 ~~lp  268 (279)
                      ....
T Consensus       168 ~~~~  171 (197)
T 3eey_A          168 QRTD  171 (197)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.65  E-value=7.9e-16  Score=133.41  Aligned_cols=118  Identities=12%  Similarity=0.232  Sum_probs=97.0

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~  188 (279)
                      .++..+....++.+|||||||+|..+..+++. + .++|+++|+++.+++.|+++++..++.++++++++|+.+..  . 
T Consensus        36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-  110 (267)
T 3kkz_A           36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-V-TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP--F-  110 (267)
T ss_dssp             HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-C-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--C-
T ss_pred             HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC--C-
Confidence            33333333556789999999999999999987 3 57999999999999999999999999888999999996532  1 


Q ss_pred             hCCCCCcEEEEEEeCCc--cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          189 LNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~~--~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                         .+++||+|++....  -+...+++.+.++|||||++++.+..|..
T Consensus       111 ---~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  155 (267)
T 3kkz_A          111 ---RNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWFT  155 (267)
T ss_dssp             ---CTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEESS
T ss_pred             ---CCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeeecC
Confidence               15789999987652  25678999999999999999998877643

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.64  E-value=3.2e-15  Score=122.11  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=90.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+++++..++.++++++++|+.+.++.+...  .++||
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~fD  118 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE--KLQFD  118 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT--TCCEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhc--CCCCC
Confidence            46779999999999999988874 2 47999999999999999999999988778999999998866543211  46899


Q ss_pred             EEEEeCC--ccchHHHHHHH--HccCCCCcEEEEeCCC
Q 023645          198 FAFVDAE--KRMYQEYFELL--LQLIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~--~~~~~~~l~~~--~~~Lk~gG~lv~dd~~  231 (279)
                      +|+++.+  .......++.+  .++|+|||++++....
T Consensus       119 ~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          119 LVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             EEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             EEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            9999977  34456677777  7899999999986443

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.64  E-value=1.6e-15  Score=130.43  Aligned_cols=120  Identities=22%  Similarity=0.261  Sum_probs=101.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ..+.+.....+...+...++.+|||+|||+|..+..+++.+.+.++++++|+++++++.|+++++..++.++++++++|+
T Consensus        75 ~~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  154 (255)
T 3mb5_A           75 QIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDI  154 (255)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCG
T ss_pred             ccccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECch
Confidence            34566666677777777888999999999999999999985447899999999999999999999999988899999999


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .+.++       +++||+|+++.+  ....+++.+.+.|+|||.+++..
T Consensus       155 ~~~~~-------~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          155 YEGIE-------EENVDHVILDLP--QPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             GGCCC-------CCSEEEEEECSS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             hhccC-------CCCcCEEEECCC--CHHHHHHHHHHHcCCCCEEEEEE
Confidence            86432       568999999765  33467899999999999999854

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.64  E-value=1.5e-15  Score=126.56  Aligned_cols=110  Identities=15%  Similarity=0.170  Sum_probs=88.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhHHHHHHhCCCCCc-
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASS-  195 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~~~~~~~~~~-  195 (279)
                      .++.+|||+|||+|..+..++...  ..+|+++|+++++++.|+++++..++. ++++++++|+.+.++.+    .+++ 
T Consensus        52 ~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~~~  125 (201)
T 2ift_A           52 IHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP----QNQPH  125 (201)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC----CSSCC
T ss_pred             cCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh----ccCCC
Confidence            367899999999999999877653  369999999999999999999998884 56999999997654321    1367 


Q ss_pred             EEEEEEeCC--ccchHHHHHHH--HccCCCCcEEEEeCCCCC
Q 023645          196 YDFAFVDAE--KRMYQEYFELL--LQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       196 fDlI~id~~--~~~~~~~l~~~--~~~Lk~gG~lv~dd~~~~  233 (279)
                      ||+|+++.+  .......++.+  .++|+|||++++......
T Consensus       126 fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          126 FDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             EEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            999999987  34566778888  678999999998655433

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.63  E-value=9.3e-15  Score=119.37  Aligned_cols=120  Identities=20%  Similarity=0.305  Sum_probs=100.3

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .........+...+...++.+|||+|||+|..+..+++..   .+|+++|+++.+++.++++++..+..++++++++|+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   92 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP   92 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHH
Confidence            3445555555555666778899999999999999999864   6999999999999999999999888667999999987


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +.++.      .++||+|+++....+...+++.+.++|+|||.+++...
T Consensus        93 ~~~~~------~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           93 EALCK------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             HHHTT------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             Hhccc------CCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            64432      25899999998777788999999999999999998654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.62  E-value=2.1e-15  Score=125.89  Aligned_cols=106  Identities=19%  Similarity=0.236  Sum_probs=90.7

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      .+|||||||+|..+..+++. + +.+++++|+++.+++.|+++++..++.++++++++|+.+..  +    .+++||+|+
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~----~~~~~D~v~  116 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ-S-DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP--I----EDNYADLIV  116 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH-S-EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS--S----CTTCEEEEE
T ss_pred             CEEEEECCCCCHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC--C----CcccccEEE
Confidence            39999999999999999988 3 67999999999999999999999998888999999997632  1    157899999


Q ss_pred             EeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          201 VDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       201 id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      +...   ..+...+++.+.++|+|||.+++.+.....
T Consensus       117 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  153 (219)
T 3dlc_A          117 SRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNK  153 (219)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSH
T ss_pred             ECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcH
Confidence            9865   345678999999999999999998765444

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.62  E-value=2.9e-15  Score=134.51  Aligned_cols=113  Identities=21%  Similarity=0.373  Sum_probs=91.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--CC-CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~-~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..+++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...  ++ ..+++++++|+.+.++..    .++
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~----~~~  193 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA----AEG  193 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS----CTT
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc----cCC
Confidence            4678999999999999999998654 679999999999999999998753  44 357999999998776532    136


Q ss_pred             cEEEEEEeCCc-----cc--hHHHHHHHHccCCCCcEEEEe-CCCCCCc
Q 023645          195 SYDFAFVDAEK-----RM--YQEYFELLLQLIRVGGIIVID-NVLWHGK  235 (279)
Q Consensus       195 ~fDlI~id~~~-----~~--~~~~l~~~~~~Lk~gG~lv~d-d~~~~g~  235 (279)
                      +||+|++|...     ..  ...+++.+.++|+|||+++++ +..|.+.
T Consensus       194 ~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~  242 (334)
T 1xj5_A          194 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHM  242 (334)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCH
T ss_pred             CccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccH
Confidence            89999998641     11  478999999999999999997 5666653

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.62  E-value=9.4e-15  Score=130.24  Aligned_cols=125  Identities=17%  Similarity=0.212  Sum_probs=102.2

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .+......++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.++++++..|+.+ ++++++|+.
T Consensus       101 ~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~~  179 (315)
T 1ixk_A          101 YIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSL  179 (315)
T ss_dssp             EECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGG
T ss_pred             EEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECChh
Confidence            4455556666667777788899999999999999999988656899999999999999999999999864 999999997


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      +... .     .++||+|++|++...                         ...+++.+.++|||||.+++..+...
T Consensus       180 ~~~~-~-----~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~  250 (315)
T 1ixk_A          180 HIGE-L-----NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE  250 (315)
T ss_dssp             GGGG-G-----CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             hccc-c-----cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence            6532 2     468999999865210                         14788899999999999999776543

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.62  E-value=7.7e-15  Score=136.77  Aligned_cols=123  Identities=17%  Similarity=0.260  Sum_probs=101.3

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      ......++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++++++.|+.  ++++++|+.+.
T Consensus        86 Qd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l  163 (464)
T 3m6w_A           86 QEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRAL  163 (464)
T ss_dssp             CCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHH
T ss_pred             ECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHh
Confidence            3334455556666677889999999999999999999876689999999999999999999999986  99999999876


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          184 LKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ....     .++||+|++|++..                         .....++.+.++|||||.|++..+.+.
T Consensus       164 ~~~~-----~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~  233 (464)
T 3m6w_A          164 AEAF-----GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA  233 (464)
T ss_dssp             HHHH-----CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             hhhc-----cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence            5434     57899999987621                         126688889999999999999776554

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.62  E-value=3.5e-15  Score=127.60  Aligned_cols=105  Identities=20%  Similarity=0.227  Sum_probs=88.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..++...+ +++|+++|+++++++.|+++++..++.+ ++++++|+.+.....   ...++||
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~---~~~~~fD  143 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRK---DVRESYD  143 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCT---TTTTCEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHhcccc---cccCCcc
Confidence            3678999999999999999998765 6899999999999999999999999865 999999997642100   0036899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +|++.. ...+..+++.+.++|+|||.+++.
T Consensus       144 ~V~~~~-~~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          144 IVTARA-VARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             EEEEEC-CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEEec-cCCHHHHHHHHHHhcCCCCEEEEE
Confidence            999987 456788999999999999999884

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.62  E-value=8.5e-15  Score=121.85  Aligned_cols=103  Identities=11%  Similarity=0.201  Sum_probs=89.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...+..+ ++++++|+.+..        .++||
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--------~~~fD  127 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV--------DGKFD  127 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC--------CSCEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC--------CCCce
Confidence            35679999999999999998874 3 4699999999999999999999988876 999999997532        57899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +|+++...+....+++.+.++|+|||.+++.++.
T Consensus       128 ~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  161 (205)
T 3grz_A          128 LIVANILAEILLDLIPQLDSHLNEDGQVIFSGID  161 (205)
T ss_dssp             EEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred             EEEECCcHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence            9999988777888899999999999999996544

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.62  E-value=3.4e-15  Score=124.53  Aligned_cols=104  Identities=14%  Similarity=0.157  Sum_probs=85.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||+|||+|..++.++...  ..+|+++|+++.+++.|+++++..++ ++++++++|+.+.++..     .++||+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~-----~~~fD~  125 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK-----GTPHNI  125 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC-----CCCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhc-----CCCCCE
Confidence            67899999999999999877653  25999999999999999999999888 56999999998755421     468999


Q ss_pred             EEEeCC--ccchHHHHHHHHc--cCCCCcEEEEeCC
Q 023645          199 AFVDAE--KRMYQEYFELLLQ--LIRVGGIIVIDNV  230 (279)
Q Consensus       199 I~id~~--~~~~~~~l~~~~~--~Lk~gG~lv~dd~  230 (279)
                      |+++.+  .......++.+.+  +|+|||++++...
T Consensus       126 V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          126 VFVDPPFRRGLLEETINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             EEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence            999977  3455667777754  5999999998654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.62  E-value=5.6e-15  Score=130.45  Aligned_cols=107  Identities=7%  Similarity=0.091  Sum_probs=93.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++..+  .+|+++|+++++++.|++++...++.++++++++|+.+.         +++|
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~f  138 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---------DEPV  138 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---------CCCC
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---------CCCc
Confidence            35677999999999999999999864  799999999999999999999999988899999999754         4789


Q ss_pred             EEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          197 DFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       197 DlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      |+|++....            ..+..+++.+.++|||||.+++.++....
T Consensus       139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  188 (302)
T 3hem_A          139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD  188 (302)
T ss_dssp             SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred             cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence            999987543            33478999999999999999998876554

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.62  E-value=5.2e-15  Score=128.02  Aligned_cols=114  Identities=15%  Similarity=0.148  Sum_probs=94.7

Q ss_pred             HHHHHHHHhhc-CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHH
Q 023645          108 AQLLAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (279)
Q Consensus       108 ~~~l~~l~~~~-~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (279)
                      +.++..++... ++.+|||+|||+|..++.+++..+  .+|+++|+++.+++.|+++++..++.++++++++|+.+....
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~  114 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL  114 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh
Confidence            44566666666 788999999999999999998754  499999999999999999999999988899999999876432


Q ss_pred             HHhCCCCCcEEEEEEeCCc-----------------------cchHHHHHHHHccCCCCcEEEE
Q 023645          187 LILNGEASSYDFAFVDAEK-----------------------RMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       187 ~~~~~~~~~fDlI~id~~~-----------------------~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +    ..++||+|+++.+.                       .....+++.+.++|+|||.+++
T Consensus       115 ~----~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          115 I----PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             S----CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             h----ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence            2    14789999997652                       1235688999999999999998

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.61  E-value=4.4e-15  Score=125.54  Aligned_cols=105  Identities=18%  Similarity=0.232  Sum_probs=88.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||||||+|.++..+++..| +.+|+|+|+++.+++.|+++++..++.+ ++++++|+.+.++....   +++||.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~---~~~~d~  108 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMIP---DNSLRM  108 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHSC---TTCEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHcC---CCChhe
Confidence            567999999999999999999887 6899999999999999999999988875 99999999887664321   579999


Q ss_pred             EEEeCC---cc--c------hHHHHHHHHccCCCCcEEEEe
Q 023645          199 AFVDAE---KR--M------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       199 I~id~~---~~--~------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |++..+   ..  .      ...+++.+.++|||||++++.
T Consensus       109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence            998632   11  1      135899999999999999884

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.61  E-value=3.9e-15  Score=130.25  Aligned_cols=106  Identities=15%  Similarity=0.211  Sum_probs=87.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--CC-CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~-~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..+++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...  ++ .++++++.+|+.+.++..     .+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-----~~  147 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-----EN  147 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-----CS
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-----CC
Confidence            3578999999999999999987643 579999999999999999988652  34 457999999998876542     57


Q ss_pred             cEEEEEEeCCccc-------hHHHHHHHHccCCCCcEEEEeC
Q 023645          195 SYDFAFVDAEKRM-------YQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       195 ~fDlI~id~~~~~-------~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +||+|++|.....       ..++++.+.+.|+|||++++..
T Consensus       148 ~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            8999999875321       2679999999999999999974

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.61  E-value=1.5e-14  Score=116.25  Aligned_cols=107  Identities=19%  Similarity=0.171  Sum_probs=87.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||+|||+|..+..+++..+   +|+++|+++.+++.|+++++..++  +++++++|+.+.++.....  .++||+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~--~~~~D~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQ--GERFTV  113 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHT--TCCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhcc--CCceEE
Confidence            678999999999999999998743   599999999999999999998887  6999999998866544221  248999


Q ss_pred             EEEeCCc-cchHHHHHHHH--ccCCCCcEEEEeCCCC
Q 023645          199 AFVDAEK-RMYQEYFELLL--QLIRVGGIIVIDNVLW  232 (279)
Q Consensus       199 I~id~~~-~~~~~~l~~~~--~~Lk~gG~lv~dd~~~  232 (279)
                      |+++.+. ......++.+.  ++|+|||++++.....
T Consensus       114 i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          114 AFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             EEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             EEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence            9998654 45556777777  9999999999865443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.60  E-value=1.2e-14  Score=135.28  Aligned_cols=125  Identities=17%  Similarity=0.225  Sum_probs=102.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +......++..++...++.+|||+|||+|..|..++..++..++|+++|+++.+++.+++++++.|+.+ +.++++|+.+
T Consensus        89 vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~~  167 (456)
T 3m4x_A           89 SQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAE  167 (456)
T ss_dssp             ECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHHH
T ss_pred             EECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHH
Confidence            344445566666677788899999999999999999987756899999999999999999999999974 9999999987


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          183 SLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      .....     .++||+|++|++..                         .....++.+.++|||||.|++..+.+.
T Consensus       168 l~~~~-----~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  238 (456)
T 3m4x_A          168 LVPHF-----SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA  238 (456)
T ss_dssp             HHHHH-----TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred             hhhhc-----cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence            65444     57899999997621                         122678888999999999999877654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.60  E-value=6.1e-15  Score=120.65  Aligned_cols=105  Identities=13%  Similarity=0.190  Sum_probs=89.0

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-cEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++...++.+ +++++.+|+.+.++       .+
T Consensus        49 ~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~  118 (194)
T 1dus_A           49 VVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK-------DR  118 (194)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT-------TS
T ss_pred             ccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc-------cC
Confidence            3446779999999999999999887   4799999999999999999999888765 59999999876432       46


Q ss_pred             cEEEEEEeCCc----cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAEK----RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~~----~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +||+|+++...    .....+++.+.++|+|||.+++...
T Consensus       119 ~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A          119 KYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             CEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            89999998763    3456889999999999999998654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.60  E-value=4.7e-14  Score=121.86  Aligned_cols=135  Identities=13%  Similarity=0.174  Sum_probs=103.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++++.+++.  +++.++|+.+.++       .++||
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~---g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~-------~~~fD  186 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP-------FGPFD  186 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG-------GCCEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc-------CCCCC
Confidence            46789999999999999998875   249999999999999999999988875  8999999876432       46899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEE-eecCCceEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM-VPIGDGMTIC  276 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-lp~~~G~~i~  276 (279)
                      +|+++...+....+++.+.++|+|||.+++..+....              ..++.+.+.+ .+|.... ...++...+.
T Consensus       187 ~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~~~~--------------~~~v~~~l~~-~Gf~~~~~~~~~~W~~l~  251 (254)
T 2nxc_A          187 LLVANLYAELHAALAPRYREALVPGGRALLTGILKDR--------------APLVREAMAG-AGFRPLEEAAEGEWVLLA  251 (254)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGG--------------HHHHHHHHHH-TTCEEEEEEEETTEEEEE
T ss_pred             EEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeeccCC--------------HHHHHHHHHH-CCCEEEEEeccCCeEEEE
Confidence            9999887777788999999999999999997654321              2334444433 4566543 3345556555


Q ss_pred             EEC
Q 023645          277 QKR  279 (279)
Q Consensus       277 ~~~  279 (279)
                      -||
T Consensus       252 ~~k  254 (254)
T 2nxc_A          252 YGR  254 (254)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.59  E-value=3.3e-14  Score=124.17  Aligned_cols=122  Identities=16%  Similarity=0.192  Sum_probs=98.1

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~  188 (279)
                      .++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.++++++..|+. +++++++|+.+......
T Consensus        73 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~  151 (274)
T 3ajd_A           73 MIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLL  151 (274)
T ss_dssp             GHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhh
Confidence            34445555667889999999999999999998764589999999999999999999999986 59999999987644321


Q ss_pred             hCCCCCcEEEEEEeCCc---------------------cchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          189 LNGEASSYDFAFVDAEK---------------------RMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~~---------------------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ..  .++||+|++|++.                     .....+++.+.++|||||.+++..+.+.
T Consensus       152 ~~--~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~  215 (274)
T 3ajd_A          152 KN--EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME  215 (274)
T ss_dssp             HT--TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             hc--cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence            11  3689999999542                     2346789999999999999999776544

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.59  E-value=6.2e-15  Score=127.14  Aligned_cols=103  Identities=24%  Similarity=0.355  Sum_probs=87.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||||||+|..++.++...+ +++|+++|+++++++.|+++++..++.+ ++++++|+.+.....   ...++||+
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~---~~~~~fD~  154 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREA---GHREAYAR  154 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTST---TTTTCEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhccc---ccCCCceE
Confidence            567999999999999999999876 7899999999999999999999999976 999999997653210   00378999


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |++.+. .....+++.+.++|+|||.+++
T Consensus       155 I~s~a~-~~~~~ll~~~~~~LkpgG~l~~  182 (249)
T 3g89_A          155 AVARAV-APLCVLSELLLPFLEVGGAAVA  182 (249)
T ss_dssp             EEEESS-CCHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEECCc-CCHHHHHHHHHHHcCCCeEEEE
Confidence            999765 3467889999999999999886

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.59  E-value=7.7e-15  Score=129.67  Aligned_cols=106  Identities=15%  Similarity=0.324  Sum_probs=86.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH--hCC-CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGV-SHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g~-~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..+++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++..  .++ ..+++++++|+.+.++..     .+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----~~  162 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-----KN  162 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-----SS
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-----CC
Confidence            3568999999999999999998654 57999999999999999998865  233 457999999998765432     47


Q ss_pred             cEEEEEEeCCcc--------chHHHHHHHHccCCCCcEEEEeC
Q 023645          195 SYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       195 ~fDlI~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +||+|++|....        ...++++.+.+.|+|||++++..
T Consensus       163 ~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          163 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             CEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            899999987533        23688999999999999999963

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.59  E-value=5.3e-15  Score=128.27  Aligned_cols=119  Identities=20%  Similarity=0.261  Sum_probs=95.7

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH---hCCCCcEEEEEcChhhHH
Q 023645          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGVSHKVKIKHGLAADSL  184 (279)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~g~~~~v~~~~gd~~~~l  184 (279)
                      +.++..++...++.+|||+|||+|..++.++...+ +.+|+++|+++++++.|+++++.   +++.++++++++|+.+..
T Consensus        25 ~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~  103 (260)
T 2ozv_A           25 AMLLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRA  103 (260)
T ss_dssp             HHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCH
T ss_pred             HHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHh
Confidence            34455555556678999999999999999999886 67999999999999999999998   888878999999998764


Q ss_pred             HHHHhC-CCCCcEEEEEEeCCc---------------------cchHHHHHHHHccCCCCcEEEE
Q 023645          185 KALILN-GEASSYDFAFVDAEK---------------------RMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       185 ~~~~~~-~~~~~fDlI~id~~~---------------------~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +..... ...++||+|+++.+.                     ..+..+++.+.++|+|||.+++
T Consensus       104 ~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  168 (260)
T 2ozv_A          104 KARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL  168 (260)
T ss_dssp             HHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence            422111 124789999998542                     1256788999999999999988

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.59  E-value=2.4e-14  Score=120.01  Aligned_cols=113  Identities=14%  Similarity=0.165  Sum_probs=93.8

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ....++.+|||+|||+|..+..+++..++..+|+++|+++.+++.+++++...++. +++++.+|+.+..  .    .++
T Consensus        33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~----~~~  105 (219)
T 3dh0_A           33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIP--L----PDN  105 (219)
T ss_dssp             HTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCS--S----CSS
T ss_pred             hCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCC--C----CCC
Confidence            34556779999999999999999998744689999999999999999999988886 5999999987532  1    157


Q ss_pred             cEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          195 SYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       195 ~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      +||+|++...   ..+...+++.+.++|+|||.+++.+.....
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  148 (219)
T 3dh0_A          106 TVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEE  148 (219)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred             CeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccc
Confidence            8999999765   335678999999999999999997755443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.59  E-value=5.8e-14  Score=113.81  Aligned_cols=114  Identities=18%  Similarity=0.225  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      ..+.....+.......++.+|||+|||+|..+..+++  + ..+++++|+++.+++.++++++..++. +++++++|+.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~   94 (183)
T 2yxd_A           19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--R-CKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAED   94 (183)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--T-SSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHHH
T ss_pred             CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCccc
Confidence            3444445555555556778999999999999999998  3 689999999999999999999998874 59999999976


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .++       .++||+|+++.. .....+++.+.++  |||.+++...
T Consensus        95 ~~~-------~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A           95 VLD-------KLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             HGG-------GCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             ccc-------CCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEec
Confidence            322       368999999888 7788889998888  9999999764

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.58  E-value=4.1e-15  Score=132.15  Aligned_cols=106  Identities=8%  Similarity=0.061  Sum_probs=91.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++..  +.+|+++|+++++++.|++++...++.++++++.+|+.+.         +++||
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~fD  157 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---------AEPVD  157 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---------CCCCS
T ss_pred             CCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC---------CCCcC
Confidence            456799999999999999999875  3699999999999999999999888888899999998653         36899


Q ss_pred             EEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       198 lI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      +|++...     ..+...+++.+.++|+|||.+++.++....
T Consensus       158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  199 (318)
T 2fk8_A          158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH  199 (318)
T ss_dssp             EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred             EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence            9998754     256688999999999999999998776544

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.58  E-value=1.5e-14  Score=121.59  Aligned_cols=104  Identities=16%  Similarity=0.151  Sum_probs=86.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||||||+|..+..+++..| +.+|+|+|+++.+++.|+++++..++. +++++++|+.+....+    .+++||.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~----~~~~~d~  111 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF----EPGEVKR  111 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC----CTTSCCE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhc----CcCCcCE
Confidence            466999999999999999999876 789999999999999999999988885 4999999998743222    1468999


Q ss_pred             EEEeCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 023645          199 AFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       199 I~id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |++..+..           ....+++.+.+.|+|||.|++.
T Consensus       112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence            98864311           1467899999999999999984

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.58  E-value=8.8e-15  Score=121.78  Aligned_cols=120  Identities=20%  Similarity=0.268  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          104 SPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       104 ~~~~~~~l~~l~~~----~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      .+....++..+...    .++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.|++++...+.  +++++++|
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d   87 (215)
T 4dzr_A           11 RPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGA--VVDWAAAD   87 (215)
T ss_dssp             CHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC---------------------CCHHH
T ss_pred             CccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcc
Confidence            44555555555543    5677999999999999999999876 67999999999999999999988776  68999999


Q ss_pred             hhhHHHHHHhCCCCCcEEEEEEeCCccc-----------------------------hHHHHHHHHccCCCCcE-EEEe
Q 023645          180 AADSLKALILNGEASSYDFAFVDAEKRM-----------------------------YQEYFELLLQLIRVGGI-IVID  228 (279)
Q Consensus       180 ~~~~l~~~~~~~~~~~fDlI~id~~~~~-----------------------------~~~~l~~~~~~Lk~gG~-lv~d  228 (279)
                      +.+.++.....  .++||+|+++.+...                             +..+++.+.++|+|||+ +++.
T Consensus        88 ~~~~~~~~~~~--~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  164 (215)
T 4dzr_A           88 GIEWLIERAER--GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE  164 (215)
T ss_dssp             HHHHHHHHHHT--TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred             hHhhhhhhhhc--cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            98755431111  378999999754210                             15677778899999999 6553

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.58  E-value=1.3e-14  Score=121.85  Aligned_cols=104  Identities=16%  Similarity=0.189  Sum_probs=87.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||||||+|..+..+++..| +.+++|+|+++.+++.|++++...++ .+++++++|+.+....+    .+++||+
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~----~~~~~D~  114 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYF----EDGEIDR  114 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTS----CTTCCSE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhc----CCCCCCE
Confidence            467999999999999999999987 78999999999999999999999888 46999999997632111    1468999


Q ss_pred             EEEeCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 023645          199 AFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       199 I~id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+++.+..           .+..+++.+.++|+|||++++.
T Consensus       115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            99986522           2367999999999999999884

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.58  E-value=2.4e-14  Score=124.90  Aligned_cols=117  Identities=16%  Similarity=0.239  Sum_probs=96.8

Q ss_pred             CCHHHHHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          103 VSPDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~--~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ..++...++..++..  .++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.|+++++..++. +++++++|+
T Consensus        91 pr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~  168 (276)
T 2b3t_A           91 PRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDW  168 (276)
T ss_dssp             CCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCST
T ss_pred             cCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcch
Confidence            355666666666655  4567999999999999999998876 689999999999999999999998886 599999999


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~----------------------------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .+.++       .++||+|+++.+.                            ..+..+++.+.++|+|||++++.
T Consensus       169 ~~~~~-------~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~  237 (276)
T 2b3t_A          169 FSALA-------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  237 (276)
T ss_dssp             TGGGT-------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhhcc-------cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            76532       4689999998542                            23467788899999999999996

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.57  E-value=1.4e-14  Score=125.72  Aligned_cols=110  Identities=16%  Similarity=0.214  Sum_probs=93.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++..  +++|+++|+++.+++.+++++...++.++++++.+|+.+.. .     .+++|
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~-----~~~~f  130 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP-F-----EDASF  130 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-S-----CTTCE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-C-----CCCCc
Confidence            3467899999999999999999875  47999999999999999999999998888999999997531 1     14789


Q ss_pred             EEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       197 DlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      |+|++...   ..+...+++.+.++|||||.+++.+....+
T Consensus       131 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  171 (273)
T 3bus_A          131 DAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLA  171 (273)
T ss_dssp             EEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESS
T ss_pred             cEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence            99998754   345678999999999999999998876543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.57  E-value=1.3e-14  Score=121.05  Aligned_cols=113  Identities=20%  Similarity=0.310  Sum_probs=93.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      ..+.....+...+...++.+|||||||+|..+..+++.   +++|+++|+++++++.|+++++..+.. +++++++|+.+
T Consensus        61 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~  136 (210)
T 3lbf_A           61 SQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQ  136 (210)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCccc
Confidence            35666666666667778889999999999999999987   479999999999999999999998886 59999999976


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..+.      .++||+|+++.......   +.+.++|+|||.+++.
T Consensus       137 ~~~~------~~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          137 GWQA------RAPFDAIIVTAAPPEIP---TALMTQLDEGGILVLP  173 (210)
T ss_dssp             CCGG------GCCEEEEEESSBCSSCC---THHHHTEEEEEEEEEE
T ss_pred             CCcc------CCCccEEEEccchhhhh---HHHHHhcccCcEEEEE
Confidence            4332      47899999987654433   3678999999999985

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.57  E-value=8.7e-15  Score=128.22  Aligned_cols=109  Identities=18%  Similarity=0.281  Sum_probs=92.4

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ....++.+|||||||+|.++..+++.++.+.+|+++|+++.+++.|++++...+.  +++++++|+.+...       ++
T Consensus        18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~   88 (284)
T 3gu3_A           18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL-------ND   88 (284)
T ss_dssp             SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC-------SS
T ss_pred             hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc-------CC
Confidence            3455788999999999999999999887568999999999999999999987654  69999999976321       46


Q ss_pred             cEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          195 SYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       195 ~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      +||+|++...   ..+...+++.+.++|+|||.+++.+..|
T Consensus        89 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  129 (284)
T 3gu3_A           89 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW  129 (284)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             CeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecch
Confidence            8999999865   3456789999999999999999887764

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.57  E-value=2.7e-14  Score=120.78  Aligned_cols=136  Identities=15%  Similarity=0.173  Sum_probs=99.8

Q ss_pred             hcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       117 ~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ..++.+|||+||| +|..+..+++..  +.+|+++|+++.+++.|+++++..++  +++++++|+....+ +    .+++
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-~----~~~~  123 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKG-V----VEGT  123 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTT-T----CCSC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhh-c----ccCc
Confidence            4567899999999 999999999875  47999999999999999999999888  59999999632211 1    1478


Q ss_pred             EEEEEEeCCcc----------------------chHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHH
Q 023645          196 YDFAFVDAEKR----------------------MYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFN  253 (279)
Q Consensus       196 fDlI~id~~~~----------------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~  253 (279)
                      ||+|+++.+..                      .+..+++.+.++|+|||.+++--.  .+.           ....++.
T Consensus       124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~-----------~~~~~~~  190 (230)
T 3evz_A          124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP--DKE-----------KLLNVIK  190 (230)
T ss_dssp             EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE--SCH-----------HHHHHHH
T ss_pred             eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec--ccH-----------hHHHHHH
Confidence            99999985521                      146789999999999999998311  110           1234444


Q ss_pred             HHhhhCCCeEEEEeecCCceEE
Q 023645          254 KNLMEDERVSISMVPIGDGMTI  275 (279)
Q Consensus       254 ~~l~~~~~~~~~~lp~~~G~~i  275 (279)
                      +.+. +.++....+.+..|..+
T Consensus       191 ~~l~-~~g~~~~~~~~~~g~~~  211 (230)
T 3evz_A          191 ERGI-KLGYSVKDIKFKVGTRW  211 (230)
T ss_dssp             HHHH-HTTCEEEEEEECCCC-C
T ss_pred             HHHH-HcCCceEEEEecCCCeE
Confidence            4443 34567777777666543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.57  E-value=1.7e-14  Score=128.87  Aligned_cols=106  Identities=21%  Similarity=0.346  Sum_probs=87.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH--hCC-CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGV-SHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g~-~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..+++|||||||+|..+..+++..+ ..+|+++|+++++++.|++++..  .++ ..+++++++|+.+.++..     ++
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----~~  188 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-----TN  188 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-----CS
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc-----CC
Confidence            4578999999999999999997644 67999999999999999998865  233 457999999998876543     57


Q ss_pred             cEEEEEEeCCc-----cc-h-HHHHHHHHccCCCCcEEEEeC
Q 023645          195 SYDFAFVDAEK-----RM-Y-QEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       195 ~fDlI~id~~~-----~~-~-~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +||+|++|...     .. + .++++.+.+.|+|||++++..
T Consensus       189 ~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          189 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             CEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            89999998731     11 2 689999999999999999963

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.56  E-value=9.7e-15  Score=128.65  Aligned_cols=115  Identities=18%  Similarity=0.303  Sum_probs=88.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC---------------------------
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS---------------------------  170 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~---------------------------  170 (279)
                      .++++|||||||+|..+..+++.++ ..+|+|+|+++.+++.|++++...+..                           
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            3578999999999999999999986 579999999999999999987655422                           


Q ss_pred             ------------------------------CcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCc---c------chHHH
Q 023645          171 ------------------------------HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK---R------MYQEY  211 (279)
Q Consensus       171 ------------------------------~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~---~------~~~~~  211 (279)
                                                    ++++|+++|+.+....+.. ...++||+|++....   +      ....+
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~-~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~  202 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVE-AQTPEYDVVLCLSLTKWVHLNWGDEGLKRM  202 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHT-TCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCcccccc-ccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence                                          5799999998743222211 125799999998753   2      56678


Q ss_pred             HHHHHccCCCCcEEEEeCCCCCC
Q 023645          212 FELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       212 l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      ++.+.++|+|||+|++...-|..
T Consensus       203 l~~~~~~LkpGG~lil~~~~~~~  225 (292)
T 3g07_A          203 FRRIYRHLRPGGILVLEPQPWSS  225 (292)
T ss_dssp             HHHHHHHEEEEEEEEEECCCHHH
T ss_pred             HHHHHHHhCCCcEEEEecCCchh
Confidence            99999999999999998766653

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.56  E-value=1.5e-13  Score=123.31  Aligned_cols=109  Identities=15%  Similarity=0.170  Sum_probs=90.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-cEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ++.+|||+|||+|..++.++..   +.+|+++|+|+.+++.|+++++.+++.+ +++++++|+.+.++.....  .++||
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~--~~~fD  227 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR--GSTYD  227 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH--TCCBS
T ss_pred             CCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhc--CCCce
Confidence            5679999999999999999985   3599999999999999999999999876 5999999998876543211  36899


Q ss_pred             EEEEeCCc-------------cchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          198 FAFVDAEK-------------RMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       198 lI~id~~~-------------~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      +|++|.+.             ..+..+++.+.++|+|||++++.....
T Consensus       228 ~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          228 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             EEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            99998762             135678888999999999988766543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.56  E-value=2.3e-14  Score=119.17  Aligned_cols=100  Identities=11%  Similarity=0.153  Sum_probs=87.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...++.+ ++++++|+.+..+       .++||+
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~-------~~~~D~  135 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPS-------EPPFDG  135 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCC-------CSCEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCc-------cCCcCE
Confidence            478999999999999999999876 6899999999999999999999988876 9999999976431       468999


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |++.. ...+..+++.+.++|+|||.+++.
T Consensus       136 i~~~~-~~~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          136 VISRA-FASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             EECSC-SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             EEEec-cCCHHHHHHHHHHhcCCCcEEEEE
Confidence            99765 456778999999999999999985

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.56  E-value=3.6e-14  Score=123.87  Aligned_cols=119  Identities=21%  Similarity=0.310  Sum_probs=99.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .+.+.....+...+...++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.|+++++..++.++++++.+|+.
T Consensus        95 ~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  174 (277)
T 1o54_A           95 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS  174 (277)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred             ccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence            34555556666666777888999999999999999999865478999999999999999999999888677999999997


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +.++       +++||+|+++.+  ....+++.+.+.|+|||.+++..
T Consensus       175 ~~~~-------~~~~D~V~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          175 EGFD-------EKDVDALFLDVP--DPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             GCCS-------CCSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             Hccc-------CCccCEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            6522       468999999764  33477889999999999999864

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.56  E-value=5.2e-14  Score=123.07  Aligned_cols=107  Identities=9%  Similarity=0.076  Sum_probs=91.1

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++..+  .+|+++|+++++++.+++++...++..+++++.+|+.+.         .++|
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~f  130 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF---------DEPV  130 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---------CCCC
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC---------CCCe
Confidence            34567999999999999999996654  599999999999999999999888887899999998643         3789


Q ss_pred             EEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          197 DFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       197 DlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      |+|++....     .+...+++.+.++|||||.+++.++....
T Consensus       131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  173 (287)
T 1kpg_A          131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLH  173 (287)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECC
T ss_pred             eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence            999987542     45678999999999999999998876543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.56  E-value=5.4e-14  Score=123.54  Aligned_cols=117  Identities=16%  Similarity=0.392  Sum_probs=94.8

Q ss_pred             CCCHHHHHHHHHHHhh---cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645          102 QVSPDQAQLLAMLVQI---LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~---~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (279)
                      ...++...++..+...   .++.+|||+|||+|..++.++.. + +.+|+++|+|+++++.|+++++..++.++++++++
T Consensus       103 ipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~  180 (284)
T 1nv8_A          103 VPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG  180 (284)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES
T ss_pred             ecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            3455556666555443   35679999999999999999998 5 78999999999999999999999999888999999


Q ss_pred             ChhhHHHHHHhCCCCCcE---EEEEEeCCccc----------------------hHHHHHHHH-ccCCCCcEEEEe
Q 023645          179 LAADSLKALILNGEASSY---DFAFVDAEKRM----------------------YQEYFELLL-QLIRVGGIIVID  228 (279)
Q Consensus       179 d~~~~l~~~~~~~~~~~f---DlI~id~~~~~----------------------~~~~l~~~~-~~Lk~gG~lv~d  228 (279)
                      |+.+.++        ++|   |+|+++++...                      -..+++.+. +.|+|||++++.
T Consensus       181 D~~~~~~--------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          181 EFLEPFK--------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             STTGGGG--------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             cchhhcc--------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            9987432        467   99999854221                      126789999 999999999984

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.55  E-value=1.7e-14  Score=125.94  Aligned_cols=111  Identities=10%  Similarity=0.091  Sum_probs=93.5

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (279)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~  190 (279)
                      +..+....++.+|||+|||+|.+++.+++..+ .++|+++|+++.+++.|+++++.+++.+ ++++++|+.+. +.    
T Consensus       111 ~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~-~~~~~~d~~~~-~~----  183 (272)
T 3a27_A          111 KRMAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNN-VIPILADNRDV-EL----  183 (272)
T ss_dssp             HHHHTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSS-EEEEESCGGGC-CC----
T ss_pred             HHHHHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEECChHHc-Cc----
Confidence            33344455678999999999999999999875 6799999999999999999999998865 88999999875 32    


Q ss_pred             CCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                        .++||+|++|.+. ....++..+.+.|+|||++++....
T Consensus       184 --~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          184 --KDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHETV  221 (272)
T ss_dssp             --TTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             --cCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence              3689999999875 5667889999999999999986554

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.55  E-value=3.3e-14  Score=124.45  Aligned_cols=105  Identities=16%  Similarity=0.099  Sum_probs=90.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|.+++.+++..+  .+|+++|+++.+++.|+++++.+++.++++++++|+.+...       .++||
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~--~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-------~~~fD  194 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------ENIAD  194 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------CSCEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-------cCCcc
Confidence            3478999999999999999999854  28999999999999999999999998889999999987643       47899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      +|+++.+. ....+++.+.++|+|||++++.....
T Consensus       195 ~Vi~~~p~-~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          195 RILMGYVV-RTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             EEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEEECCch-hHHHHHHHHHHHCCCCeEEEEEEeec
Confidence            99998763 33578889999999999999976654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.55  E-value=1.7e-14  Score=120.32  Aligned_cols=116  Identities=13%  Similarity=0.002  Sum_probs=84.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC-----------CCC
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG-----------VSH  171 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g-----------~~~  171 (279)
                      +++...+++..+ ...++.+|||+|||+|..+.++++.   +.+|+|+|+|+.+++.|++......           ...
T Consensus         7 ~~~~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~   82 (203)
T 1pjz_A            7 VNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP   82 (203)
T ss_dssp             STHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred             CCHHHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCC
Confidence            345454554433 2346789999999999999999986   4699999999999999998754210           124


Q ss_pred             cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCc-----cchHHHHHHHHccCCCCcEEEE
Q 023645          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       172 ~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +++++++|+.+.....     .++||+|++....     .....+++++.++|||||.+++
T Consensus        83 ~v~~~~~d~~~l~~~~-----~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           83 GIEIWCGDFFALTARD-----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             SSEEEEECCSSSTHHH-----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             ccEEEECccccCCccc-----CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            6999999997653221     1689999975442     2345689999999999998443

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.55  E-value=4.1e-14  Score=131.99  Aligned_cols=126  Identities=16%  Similarity=0.230  Sum_probs=100.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +......++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..|+. +++++++|+.+
T Consensus       243 ~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~  321 (450)
T 2yxl_A          243 VQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARK  321 (450)
T ss_dssp             ECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTC
T ss_pred             ecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhh
Confidence            33445556666667778889999999999999999998874489999999999999999999999986 49999999875


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ..+.+    .+++||+|++|++...                         ...+++.+.++|||||.+++..+.+.
T Consensus       322 ~~~~~----~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          322 APEII----GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             CSSSS----CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             cchhh----ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            42211    1268999999865211                         15678999999999999998776554

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.55  E-value=2.2e-14  Score=126.03  Aligned_cols=111  Identities=14%  Similarity=0.228  Sum_probs=93.4

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++.+|||||||+|..+..+++..  +.+|+++|+++.+++.|+++....++.++++++++|+.+.. .     .+++
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~-----~~~~  150 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-C-----EDNS  150 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-S-----CTTC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC-C-----CCCC
Confidence            44567899999999999999999875  36999999999999999999999999888999999997531 1     1578


Q ss_pred             EEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       196 fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      ||+|++...   ..+...+++.+.++|||||.+++.+.....
T Consensus       151 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  192 (297)
T 2o57_A          151 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKED  192 (297)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             EeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence            999998755   334678999999999999999998766543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.55  E-value=5.7e-14  Score=120.64  Aligned_cols=119  Identities=18%  Similarity=0.217  Sum_probs=96.9

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-CCCCcEEEEEcC
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGL  179 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd  179 (279)
                      ..+.+.....+...+...++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.|+++++.. | .++++++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d  156 (258)
T 2pwy_A           78 TPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGK  156 (258)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESC
T ss_pred             ccccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECc
Confidence            3445555555666666778889999999999999999998544689999999999999999999987 7 4569999999


Q ss_pred             hhhH-HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          180 AADS-LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       180 ~~~~-l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +.+. ++       +++||+|+++..  ....+++.+.++|+|||.+++..
T Consensus       157 ~~~~~~~-------~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          157 LEEAELE-------EAAYDGVALDLM--EPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             GGGCCCC-------TTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             hhhcCCC-------CCCcCEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence            9764 21       468999999764  33477899999999999999854

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.55  E-value=1.4e-13  Score=127.69  Aligned_cols=158  Identities=18%  Similarity=0.240  Sum_probs=118.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +......++..++...++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..|+.  ++++++|+.+
T Consensus       230 ~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~  306 (429)
T 1sqg_A          230 VQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRY  306 (429)
T ss_dssp             ECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTC
T ss_pred             eeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhh
Confidence            4455666667777777888999999999999999999887 489999999999999999999998874  7899999976


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCCCccc
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWHGKVA  237 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~  237 (279)
                      ..+.+.    .++||+|++|++...                         +..+++.+.++|||||.+++..+.+.....
T Consensus       307 ~~~~~~----~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~en  382 (429)
T 1sqg_A          307 PSQWCG----EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEEN  382 (429)
T ss_dssp             THHHHT----TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGT
T ss_pred             chhhcc----cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhH
Confidence            644331    368999999875211                         146788899999999999998776543311


Q ss_pred             CcccCChhhHHHHHHHHHhhhCCCeEE-----------EEeec---CCceEEEEE
Q 023645          238 DQMVNDAKTISIRNFNKNLMEDERVSI-----------SMVPI---GDGMTICQK  278 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~lp~---~~G~~i~~~  278 (279)
                              ...+..|   +...++++.           .++|-   +||+-+|+.
T Consensus       383 --------e~~v~~~---l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l  426 (429)
T 1sqg_A          383 --------SLQIKAF---LQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKL  426 (429)
T ss_dssp             --------HHHHHHH---HHHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEE
T ss_pred             --------HHHHHHH---HHhCCCCEEeCCCCCCCCeEEECCCCCCCCceEEEEE
Confidence                    1123334   445665543           45663   589999875

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.55  E-value=1.2e-14  Score=123.72  Aligned_cols=106  Identities=18%  Similarity=0.196  Sum_probs=83.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++..  ..+|+++|+++.+++.|+++.+..+  .+++++++|+.+.++.+    .+++||
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~----~~~~fD  130 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL----PDGHFD  130 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS----CTTCEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhccc----CCCceE
Confidence            356799999999999999997643  2489999999999999999887655  46999999997653222    257899


Q ss_pred             EEEEeCC--------ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          198 FAFVDAE--------KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~--------~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +|++|..        ......+++++.++|||||++++-+..
T Consensus       131 ~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             EEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            9999322        112335689999999999999987654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.55  E-value=2.9e-14  Score=124.66  Aligned_cols=103  Identities=21%  Similarity=0.315  Sum_probs=88.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      +.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...++..+++++++|+.+..+..     +++||+|
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~fD~v  140 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL-----ETPVDLI  140 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC-----SSCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc-----CCCceEE
Confidence            569999999999999999986   57999999999999999999998888778999999997654221     5899999


Q ss_pred             EEeCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          200 FVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       200 ~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ++...   ..+...+++.+.++|+|||++++...
T Consensus       141 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          141 LFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            99865   34567899999999999999999764

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.55  E-value=5.3e-14  Score=123.96  Aligned_cols=109  Identities=16%  Similarity=0.118  Sum_probs=87.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-CCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ++.+|||||||+|..+..+++.++...+|+++|+++.+++.|+++++.. +...+++++++|+.+...........++||
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  115 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID  115 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence            5779999999999999999987744789999999999999999999886 455679999999976421100000027899


Q ss_pred             EEEEeCCc--cchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEK--RMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~--~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +|++....  -+...+++.+.++|+|||.|++
T Consensus       116 ~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          116 MITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            99987541  1678899999999999999998

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.55  E-value=4.6e-14  Score=126.63  Aligned_cols=121  Identities=16%  Similarity=0.245  Sum_probs=93.2

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC----------CCC
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG----------VSH  171 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g----------~~~  171 (279)
                      ...+.....+...+...++.+|||+|||+|..+..+++..++.++|+++|+++.+++.|+++++..+          ...
T Consensus        88 ~~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~  167 (336)
T 2b25_A           88 ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD  167 (336)
T ss_dssp             CCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred             ccCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCC
Confidence            4566655556666677788999999999999999999986446899999999999999999998643          235


Q ss_pred             cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       172 ~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +++++++|+.+....+.    +++||+|+++....  ..+++.+.+.|+|||.+++-
T Consensus       168 ~v~~~~~d~~~~~~~~~----~~~fD~V~~~~~~~--~~~l~~~~~~LkpgG~lv~~  218 (336)
T 2b25_A          168 NVDFIHKDISGATEDIK----SLTFDAVALDMLNP--HVTLPVFYPHLKHGGVCAVY  218 (336)
T ss_dssp             CEEEEESCTTCCC-----------EEEEEECSSST--TTTHHHHGGGEEEEEEEEEE
T ss_pred             ceEEEECChHHcccccC----CCCeeEEEECCCCH--HHHHHHHHHhcCCCcEEEEE
Confidence            79999999976532221    46799999986533  24788999999999999974

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.54  E-value=1.6e-13  Score=124.71  Aligned_cols=148  Identities=18%  Similarity=0.251  Sum_probs=101.1

Q ss_pred             CCCEEEEEcCc------cCHHHHHHHHH-CCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHh
Q 023645          119 GAQRCIEVGVY------TGYSSLAIALV-LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALIL  189 (279)
Q Consensus       119 ~~~~VLEiG~G------~G~~t~~la~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~  189 (279)
                      ++.+|||||||      +|..++.+++. +| +++|+++|+++++.         . ...+++++++|+.+.  ...+..
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP-~a~V~GVDiSp~m~---------~-~~~rI~fv~GDa~dlpf~~~l~~  284 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFP-RGQIYGLDIMDKSH---------V-DELRIRTIQGDQNDAEFLDRIAR  284 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCT-TCEEEEEESSCCGG---------G-CBTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCC-CCEEEEEECCHHHh---------h-cCCCcEEEEecccccchhhhhhc
Confidence            57899999999      77777777765 45 78999999999972         1 235799999999763  211111


Q ss_pred             CCCCCcEEEEEEeCCc--cchHHHHHHHHccCCCCcEEEEeCCCC------CCcccCcccCChhhHHHHHHHHHhhhC--
Q 023645          190 NGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVIDNVLW------HGKVADQMVNDAKTISIRNFNKNLMED--  259 (279)
Q Consensus       190 ~~~~~~fDlI~id~~~--~~~~~~l~~~~~~Lk~gG~lv~dd~~~------~g~~~~~~~~~~~~~~~~~~~~~l~~~--  259 (279)
                      .  .++||+|+++..+  .+....|+++.++|||||++++.|+.+      .|...+......-...++++.+.+...  
T Consensus       285 ~--d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~~~  362 (419)
T 3sso_A          285 R--YGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQEL  362 (419)
T ss_dssp             H--HCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGGGS
T ss_pred             c--cCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhccccc
Confidence            0  3789999998753  456788999999999999999999882      222111111112223466666655321  


Q ss_pred             -------CCeE---EEEeecCCceEEEEEC
Q 023645          260 -------ERVS---ISMVPIGDGMTICQKR  279 (279)
Q Consensus       260 -------~~~~---~~~lp~~~G~~i~~~~  279 (279)
                             |.+.   +.-+.+.++|.+..|+
T Consensus       363 ~~~~~~~~~~~~~~~~~~h~y~~i~~~~kg  392 (419)
T 3sso_A          363 PSDPNRSPGYVDRNIVGLHVYHNVAFVEKG  392 (419)
T ss_dssp             CCCTTCCCCHHHHHEEEEEEETTEEEEEES
T ss_pred             CCCcCCCCCccccceeEEEecCcEEEEEec
Confidence                   1221   5678889999998884

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.54  E-value=2.7e-14  Score=123.15  Aligned_cols=109  Identities=16%  Similarity=0.222  Sum_probs=89.4

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      .+...++.+|||||||+|..+..+++..   .+|+++|+++.+++.|+++++..++. +++++++|+.+. + +    .+
T Consensus        32 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l-~-~----~~  101 (260)
T 1vl5_A           32 IAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-F----TD  101 (260)
T ss_dssp             HHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-S----CT
T ss_pred             HhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhC-C-C----CC
Confidence            3344577899999999999999999875   49999999999999999999988876 599999998653 1 1    15


Q ss_pred             CcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          194 SSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       194 ~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      ++||+|++...   ..+....++++.++|||||.+++.+...
T Consensus       102 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~  143 (260)
T 1vl5_A          102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  143 (260)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence            78999998865   3456789999999999999999965543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.54  E-value=3e-14  Score=126.95  Aligned_cols=116  Identities=26%  Similarity=0.372  Sum_probs=94.1

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      .+.....+...+...++.+|||||||+|..+..+++..+..++|+++|+++++++.|+++++..++.+ ++++.+|+.+.
T Consensus        60 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~  138 (317)
T 1dl5_A           60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYG  138 (317)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhc
Confidence            34444455555566678899999999999999999886645789999999999999999999988876 99999999764


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ++.      .++||+|+++...+...   +.+.+.|||||++++..
T Consensus       139 ~~~------~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          139 VPE------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             CGG------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEB
T ss_pred             ccc------CCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEE
Confidence            331      47899999987755543   56788999999999964

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.54  E-value=4.9e-14  Score=120.23  Aligned_cols=118  Identities=14%  Similarity=0.226  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645          106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (279)
Q Consensus       106 ~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (279)
                      .....+.......++.+|||||||+|..+..+++..   .+|+++|+++.+++.+++++...++. +++++++|+.+. +
T Consensus         8 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~   82 (239)
T 1xxl_A            8 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P   82 (239)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C
T ss_pred             CCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccC-C
Confidence            334445555666788899999999999999998874   49999999999999999999988876 599999998653 2


Q ss_pred             HHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          186 ALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       186 ~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      .     .+++||+|++...   ..+...+++.+.++|+|||.+++.+...+
T Consensus        83 ~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  128 (239)
T 1xxl_A           83 F-----PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP  128 (239)
T ss_dssp             S-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             C-----CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence            1     1478999998854   34567899999999999999999765543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.54  E-value=3.4e-14  Score=126.08  Aligned_cols=103  Identities=20%  Similarity=0.204  Sum_probs=85.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      .+|||||||+|..+.++++..+ +.+|++||+++.+++.|++++... ...+++++++|+.+++...    .+++||+|+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~-~~~rv~v~~~Da~~~l~~~----~~~~fDvIi  164 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIP-RAPRVKIRVDDARMVAESF----TPASRDVII  164 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCC-CTTTEEEEESCHHHHHHTC----CTTCEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhcccc-CCCceEEEECcHHHHHhhc----cCCCCCEEE
Confidence            3999999999999999999877 679999999999999999988642 2457999999998876542    146899999


Q ss_pred             EeCCcc-------chHHHHHHHHccCCCCcEEEEeC
Q 023645          201 VDAEKR-------MYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       201 id~~~~-------~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +|....       ...++++.+.+.|+|||++++..
T Consensus       165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            986421       13689999999999999999864

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.54  E-value=4.1e-14  Score=120.94  Aligned_cols=105  Identities=11%  Similarity=0.153  Sum_probs=84.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH------hCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER------AGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~------~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ++.+|||||||+|..+..+++..| +..|+|+|+++.+++.|+++++.      .+. .+++++++|+.+.++...   .
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~---~  120 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFF---Y  120 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHC---C
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhC---C
Confidence            456899999999999999999876 68999999999999999988764      344 359999999987555332   1


Q ss_pred             CCcEEEEEEeCCccc-----------hHHHHHHHHccCCCCcEEEEe
Q 023645          193 ASSYDFAFVDAEKRM-----------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       193 ~~~fDlI~id~~~~~-----------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +++||.|++......           ...+++.+.++|+|||.|++.
T Consensus       121 ~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          121 KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence            578999998643211           257899999999999999874

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.53  E-value=3.1e-14  Score=120.57  Aligned_cols=113  Identities=12%  Similarity=0.145  Sum_probs=92.2

Q ss_pred             HHHHHhhc-CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHh
Q 023645          111 LAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (279)
Q Consensus       111 l~~l~~~~-~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~  189 (279)
                      |..+.... ++.+|+|||||+|+.++.++...+ ..+|+++|+++.+++.|+++++.+|+.++++++++|..+.++.   
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~---   81 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE---   81 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc---
Confidence            34444443 456999999999999999998755 5799999999999999999999999998999999999865431   


Q ss_pred             CCCCCcEEEEEEeCC-ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          190 NGEASSYDFAFVDAE-KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       190 ~~~~~~fDlI~id~~-~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                         .++||+|++.+. ......+++.+...|+++|.+|+.-.
T Consensus        82 ---~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           82 ---TDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             ---GGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             ---CcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence               136999887543 33467888999999999999999655

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.53  E-value=1.9e-14  Score=122.04  Aligned_cols=106  Identities=16%  Similarity=0.199  Sum_probs=87.5

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|++++...+   +++++++|+.+...       .++|
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~-------~~~f  110 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF-------EEKY  110 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC-------CSCE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC-------CCCc
Confidence            34568999999999999999999986 7899999999999999999876544   69999999975421       3789


Q ss_pred             EEEEEeCCccc-----hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          197 DFAFVDAEKRM-----YQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       197 DlI~id~~~~~-----~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      |+|++......     ...+++.+.++|+|||.+++.+...+
T Consensus       111 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  152 (234)
T 3dtn_A          111 DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG  152 (234)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             eEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence            99999865322     23589999999999999999876544

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.53  E-value=7.4e-15  Score=129.99  Aligned_cols=109  Identities=15%  Similarity=0.090  Sum_probs=90.1

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..++....++.+|+++|+++.+++.|++++...++.++++++++|+.+...       .++|
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~f  188 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT-------REGY  188 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC-------CSCE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc-------cCCe
Confidence            456789999999999999998633333789999999999999999999998988889999999976421       4789


Q ss_pred             EEEEEeCCc------cchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          197 DFAFVDAEK------RMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       197 DlI~id~~~------~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      |+|++....      .....+++.+.+.|+|||++++.+...
T Consensus       189 D~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          189 DLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             EEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             EEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            999987642      223347999999999999999988654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.53  E-value=7.2e-14  Score=120.64  Aligned_cols=121  Identities=12%  Similarity=-0.002  Sum_probs=89.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH----------h----
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER----------A----  167 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~----------~----  167 (279)
                      ...+...+++..+....++.+|||+|||+|..+.+|++.   +.+|+|||+|+.+++.|++....          .    
T Consensus        51 ~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~  127 (252)
T 2gb4_A           51 QGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKV  127 (252)
T ss_dssp             TCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEE
T ss_pred             CCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccc
Confidence            455665566555544346789999999999999999986   56999999999999999775431          0    


Q ss_pred             --CCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          168 --GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       168 --g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                        ....+++++++|+.+....     +.++||+|+....     ......+++.+.++|||||.+++-.+
T Consensus       128 ~~~~~~~i~~~~~D~~~l~~~-----~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~  192 (252)
T 2gb4_A          128 FKSSSGSISLYCCSIFDLPRA-----NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL  192 (252)
T ss_dssp             EEETTSSEEEEESCTTTGGGG-----CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccCCCceEEEECccccCCcc-----cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence              0124699999999865321     0278999996543     33456789999999999999865433

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.53  E-value=4.7e-14  Score=118.08  Aligned_cols=115  Identities=20%  Similarity=0.323  Sum_probs=92.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      .+.....+...+...++.+|||||||+|..+..+++..++..+|+++|+++.+++.+++++...+..+ ++++.+|+.+.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~  140 (215)
T 2yxe_A           62 AIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGTLG  140 (215)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGGGC
T ss_pred             cHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccC
Confidence            45555555555566678899999999999999999987445799999999999999999999888765 99999998643


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++.      .++||+|+++.......   +.+.++|+|||.+++.
T Consensus       141 ~~~------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~  176 (215)
T 2yxe_A          141 YEP------LAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMP  176 (215)
T ss_dssp             CGG------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             CCC------CCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEE
Confidence            321      36899999987655433   4788999999999985

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.53  E-value=6e-14  Score=122.25  Aligned_cols=124  Identities=21%  Similarity=0.266  Sum_probs=99.1

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-C-CCCcEEE
Q 023645           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-G-VSHKVKI  175 (279)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g-~~~~v~~  175 (279)
                      .....+.+.....+...+...++.+|||+|||+|..+..+++.+.+.++|+++|+++++++.|+++++.. | +.+++++
T Consensus        78 ~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~  157 (280)
T 1i9g_A           78 RGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRL  157 (280)
T ss_dssp             SCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEE
T ss_pred             ccceeecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEE
Confidence            3344456666666666666778889999999999999999987644689999999999999999999887 5 4557999


Q ss_pred             EEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          176 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       176 ~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +++|+.+..  +    .+++||+|+++..  +...+++.+.+.|+|||.+++..
T Consensus       158 ~~~d~~~~~--~----~~~~~D~v~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          158 VVSDLADSE--L----PDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             ECSCGGGCC--C----CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EECchHhcC--C----CCCceeEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence            999997641  1    1468999999765  33478899999999999999854

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.53  E-value=2.7e-13  Score=111.18  Aligned_cols=146  Identities=10%  Similarity=-0.005  Sum_probs=100.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..++.++...| +.+|+++|+|+.+++.+++++...|..+++++  +|..+..+       .++||
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~-------~~~~D  117 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY-------KGTYD  117 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT-------TSEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC-------CCCcC
Confidence            4578999999999999999988766 67999999999999999999999998866776  56654322       68899


Q ss_pred             EEEEeCCccc---hHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceE
Q 023645          198 FAFVDAEKRM---YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMT  274 (279)
Q Consensus       198 lI~id~~~~~---~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~  274 (279)
                      +|+.....+.   ....+..+.+.|+|||++|--++-.-|.- .+......   -..|.+.+ .......-.+-+++-+.
T Consensus       118 vVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~Gr-~~gm~~~Y---~~~~~~~~-~~~~~~~~~~~~~nEl~  192 (200)
T 3fzg_A          118 VVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGK-EKGMEENY---QLWFESFT-KGWIKILDSKVIGNELV  192 (200)
T ss_dssp             EEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC---CTTCCCCH---HHHHHHHT-TTTSCEEEEEEETTEEE
T ss_pred             hhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCC-CcchhhhH---HHHHHHhc-cCcceeeeeeeeCceEE
Confidence            9998765332   22345578999999999998763221110 01111111   23455555 45555556666776665


Q ss_pred             EEEE
Q 023645          275 ICQK  278 (279)
Q Consensus       275 i~~~  278 (279)
                      ...+
T Consensus       193 y~~~  196 (200)
T 3fzg_A          193 YITS  196 (200)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            5444

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.53  E-value=8.7e-14  Score=117.52  Aligned_cols=120  Identities=20%  Similarity=0.257  Sum_probs=91.1

Q ss_pred             CHHHHHHHHHHH--hhcCCCEEEEEcCccCHHHHHHHHHCC----CCCEEEEEeCChhHHHHHHHHHHHhCC----CCcE
Q 023645          104 SPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDARSLEVAKKYYERAGV----SHKV  173 (279)
Q Consensus       104 ~~~~~~~l~~l~--~~~~~~~VLEiG~G~G~~t~~la~~~~----~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~v  173 (279)
                      .+.....+...+  ...++.+|||||||+|+.+..+++...    +.++|+++|+++++++.|+++++..++    .+++
T Consensus        63 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v  142 (227)
T 2pbf_A           63 APHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNF  142 (227)
T ss_dssp             CHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTE
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCE
Confidence            344433333333  355678999999999999999999874    467999999999999999999998873    3469


Q ss_pred             EEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       174 ~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +++.+|+.+..+....  ..++||+|+++.....   +++.+.+.|+|||.+++.
T Consensus       143 ~~~~~d~~~~~~~~~~--~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          143 KIIHKNIYQVNEEEKK--ELGLFDAIHVGASASE---LPEILVDLLAENGKLIIP  192 (227)
T ss_dssp             EEEECCGGGCCHHHHH--HHCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEE
T ss_pred             EEEECChHhcccccCc--cCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEE
Confidence            9999999774310000  0378999999877554   357788999999999985

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.53  E-value=3.6e-14  Score=123.30  Aligned_cols=108  Identities=22%  Similarity=0.248  Sum_probs=91.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++..| +.+|+++|+++.+++.+++++...+.. +++++.+|+.+...      .+++|
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~------~~~~f  106 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPF------EDSSF  106 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCS------CTTCE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCC------CCCCe
Confidence            35678999999999999999999876 689999999999999999999988876 49999999975321      15789


Q ss_pred             EEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       197 DlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      |+|++...   ..+...+++.+.++|+|||++++.+..+
T Consensus       107 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          107 DHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             eEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            99998765   3456789999999999999999977544

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.53  E-value=1.6e-13  Score=126.83  Aligned_cols=125  Identities=18%  Similarity=0.168  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHH-------HHHHHHhCCC-CcEEEE
Q 023645          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA-------KKYYERAGVS-HKVKIK  176 (279)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a-------~~~~~~~g~~-~~v~~~  176 (279)
                      +.....+...+...++.+|||||||+|..++.+++..+ ..+|+|+|+++.+++.|       +++++..|+. .+++++
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i  306 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  306 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence            44444444445566788999999999999999998765 46899999999999999       8888888853 569999


Q ss_pred             EcChhhH---HHHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          177 HGLAADS---LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       177 ~gd~~~~---l~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      ++|....   ++..     .++||+|+++..  ..+....+..+.+.|||||.|++.+.+.+..
T Consensus       307 ~gD~~~~~~~~~~~-----~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~p~~  365 (433)
T 1u2z_A          307 LKKSFVDNNRVAEL-----IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLT  365 (433)
T ss_dssp             ESSCSTTCHHHHHH-----GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             EcCccccccccccc-----cCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence            9865421   2222     368999998643  3556678899999999999999987665543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.52  E-value=3.1e-14  Score=126.34  Aligned_cols=110  Identities=11%  Similarity=0.131  Sum_probs=92.4

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++..  +++|+++|+++.+++.|+++++..++.++++++++|+.+..  +    .+++|
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~f  186 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP--F----DKGAV  186 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--C----CTTCE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC--C----CCCCE
Confidence            4457899999999999999999875  47999999999999999999999999888999999997532  1    15799


Q ss_pred             EEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          197 DFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       197 DlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      |+|++...  .-+...+++.+.++|||||.+++.+.....
T Consensus       187 D~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  226 (312)
T 3vc1_A          187 TASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNP  226 (312)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             eEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccccc
Confidence            99998754  224788999999999999999987655444

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.52  E-value=6e-14  Score=123.18  Aligned_cols=106  Identities=20%  Similarity=0.307  Sum_probs=87.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--C-CCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~-~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+  + ..+++++.+|+.+.++..     .+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----~~  150 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-----TN  150 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-----CS
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC-----CC
Confidence            4578999999999999999987644 6799999999999999999886432  2 357999999998876653     57


Q ss_pred             cEEEEEEeCCc-----cch--HHHHHHHHccCCCCcEEEEeC
Q 023645          195 SYDFAFVDAEK-----RMY--QEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       195 ~fDlI~id~~~-----~~~--~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +||+|++|...     ...  .++++.+.+.|+|||++++..
T Consensus       151 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          151 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             CEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            89999998641     111  689999999999999999974

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.52  E-value=4.1e-14  Score=129.03  Aligned_cols=106  Identities=10%  Similarity=0.117  Sum_probs=88.2

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC--cEEEEEcChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH--KVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~--~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      +...++.+|||+|||+|..+..+++..| +.+|+++|+++.+++.|+++++.+++.+  +++++.+|+.+.++       
T Consensus       218 l~~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~-------  289 (375)
T 4dcm_A          218 LPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE-------  289 (375)
T ss_dssp             CCCSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC-------
T ss_pred             CcccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC-------
Confidence            3334557999999999999999999876 6899999999999999999999988754  58889999976432       


Q ss_pred             CCcEEEEEEeCCcc--------chHHHHHHHHccCCCCcEEEEe
Q 023645          193 ASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       193 ~~~fDlI~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +++||+|+++.+..        ....+++.+.+.|+|||.+++-
T Consensus       290 ~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          290 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            57899999986632        2346789999999999999983

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.52  E-value=1.9e-13  Score=125.52  Aligned_cols=110  Identities=19%  Similarity=0.270  Sum_probs=93.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC-CCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ..++++|||+|||+|..++.++...  ..+|+++|+++.+++.|+++++.+++ .++++++++|+.+.++.+...  ..+
T Consensus       218 ~~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~--~~~  293 (396)
T 3c0k_A          218 YVENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR--GEK  293 (396)
T ss_dssp             HCTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHT--TCC
T ss_pred             hhCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhc--CCC
Confidence            3577899999999999999999852  35999999999999999999999998 657999999999877654322  368


Q ss_pred             EEEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          196 YDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       196 fDlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ||+|++|++.            ..+..++..+.++|+|||++++...
T Consensus       294 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             EEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9999999764            5677889999999999999998654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.52  E-value=5.1e-15  Score=126.26  Aligned_cols=110  Identities=13%  Similarity=0.084  Sum_probs=88.8

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHh
Q 023645          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (279)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~  189 (279)
                      ++..+....++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++++..++.++++++++|+.+..+    
T Consensus        69 l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----  141 (241)
T 3gdh_A           69 IAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS----  141 (241)
T ss_dssp             HHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG----
T ss_pred             HHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc----
Confidence            3344444457889999999999999999986   479999999999999999999999986679999999987542    


Q ss_pred             CCCCCcEEEEEEeCCccc---hHHHHHHHHccCCCCcEEEEeC
Q 023645          190 NGEASSYDFAFVDAEKRM---YQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       190 ~~~~~~fDlI~id~~~~~---~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                         .++||+|+++.+...   ....+..+.++|+|||+++++.
T Consensus       142 ---~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          142 ---FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             ---GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             ---cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence               579999999876332   2224556778999999987764

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.52  E-value=1.3e-13  Score=113.40  Aligned_cols=105  Identities=14%  Similarity=0.182  Sum_probs=87.1

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ++...++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++...++. +++++.+|+.+...       .
T Consensus        27 ~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~-------~   95 (199)
T 2xvm_A           27 AVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTF-------D   95 (199)
T ss_dssp             HTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCC-------C
T ss_pred             HhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCC-------C
Confidence            344456789999999999999999986   469999999999999999999888875 49999999876321       4


Q ss_pred             CcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ++||+|++...     ......+++.+.++|+|||.+++-+
T Consensus        96 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           96 RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             CCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            78999998764     2356789999999999999977644

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.51  E-value=1.2e-13  Score=122.53  Aligned_cols=106  Identities=12%  Similarity=0.194  Sum_probs=84.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH---hCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++..   .....+++++.+|+.+.+...    .++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~----~~~  168 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT----PDN  168 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS----CTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc----cCC
Confidence            4578999999999999999997643 57999999999999999998743   222457999999998765421    147


Q ss_pred             cEEEEEEeCCccc-------hHHHHHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAEKRM-------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~~~~-------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +||+|++|.....       ..++++.+.+.|+|||++++.
T Consensus       169 ~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  209 (304)
T 3bwc_A          169 TYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQ  209 (304)
T ss_dssp             CEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            8999999875222       158899999999999999986

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.51  E-value=2.1e-13  Score=124.77  Aligned_cols=109  Identities=16%  Similarity=0.178  Sum_probs=90.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-cEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .++++|||+|||+|..++.++...  ..+|+++|+++.+++.|+++++.+++.+ +++++++|+.+.++.+...  ..+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~--~~~f  286 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH--HLTY  286 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT--TCCE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHh--CCCc
Confidence            567899999999999999999752  2499999999999999999999999875 7999999999877655322  3589


Q ss_pred             EEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          197 DFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       197 DlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |+|++|++.            ..+..++..+.++|+|||++++...
T Consensus       287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999998763            1244566777899999999998754

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.51  E-value=5.6e-14  Score=119.33  Aligned_cols=105  Identities=13%  Similarity=0.101  Sum_probs=87.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...+...+++++++|+.+..+       .++||+
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~fD~  135 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP-------TELFDL  135 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC-------SSCEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC-------CCCeeE
Confidence            4569999999999999988763   679999999999999999998876666679999999976432       468999


Q ss_pred             EEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          199 AFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       199 I~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      |++...     ......+++.+.++|+|||.+++......
T Consensus       136 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  175 (235)
T 3lcc_A          136 IFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPIT  175 (235)
T ss_dssp             EEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCS
T ss_pred             EEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccc
Confidence            998654     33677899999999999999998655443

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.51  E-value=7.3e-14  Score=117.31  Aligned_cols=104  Identities=16%  Similarity=0.156  Sum_probs=79.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..+..+++..+ +++|+|+|+++.+++.+.+..+..   +++.++.+|+.+.....  . ..++||
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~--~-~~~~fD  128 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYS--G-IVEKVD  128 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTT--T-TCCCEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhc--c-ccccee
Confidence            4567999999999999999999887 689999999999887666655532   35888989886531100  0 047899


Q ss_pred             EEEEeCCccc-hHHHHHHHHccCCCCcEEEEe
Q 023645          198 FAFVDAEKRM-YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       198 lI~id~~~~~-~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +|+++..... ...+++++.++|||||.+++.
T Consensus       129 ~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          129 LIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            9999865443 334589999999999999986

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.51  E-value=4.3e-13  Score=130.83  Aligned_cols=156  Identities=10%  Similarity=0.086  Sum_probs=113.1

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh------CCCCcEEEEEcChhh
Q 023645          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA------GVSHKVKIKHGLAAD  182 (279)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------g~~~~v~~~~gd~~~  182 (279)
                      ..+...+...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++...      ++ .+++++++|+.+
T Consensus       711 e~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~d  789 (950)
T 3htx_A          711 EYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILE  789 (950)
T ss_dssp             HHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTS
T ss_pred             HHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHh
Confidence            33444455568899999999999999999987644579999999999999999977643      33 369999999976


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccc-----hHHHHHHHHccCCCCcEEEEeCCC------CCCc----------------
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRM-----YQEYFELLLQLIRVGGIIVIDNVL------WHGK----------------  235 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~-----~~~~l~~~~~~Lk~gG~lv~dd~~------~~g~----------------  235 (279)
                      ...      ..++||+|++....++     ...+++.+.++|||| .+++....      +.+.                
T Consensus       790 Lp~------~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~  862 (950)
T 3htx_A          790 FDS------RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPK  862 (950)
T ss_dssp             CCT------TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSS
T ss_pred             CCc------ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhccccccccccccccccc
Confidence            422      1578999999766333     335789999999999 66665432      2211                


Q ss_pred             ccCcc-cCChhhHHHHHHHHHhhhCCCeEEEEeecCCc
Q 023645          236 VADQM-VNDAKTISIRNFNKNLMEDERVSISMVPIGDG  272 (279)
Q Consensus       236 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (279)
                      +..+. ...-....+++|.+.+.++.++.+...++|+|
T Consensus       863 fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          863 FRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             CSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESSC
T ss_pred             ccccCcceeecHHHHHHHHHHHHHhcCcEEEEEccCCC
Confidence            00000 00112345777888899999999999999998

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.50  E-value=1.6e-13  Score=128.71  Aligned_cols=126  Identities=20%  Similarity=0.248  Sum_probs=102.0

Q ss_pred             CCCHHHHHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          102 QVSPDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~--~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      .+......++..++...  ++.+|||+|||+|..|..+++.++..++|+++|+++.+++.+++++++.|+.+ ++++++|
T Consensus        98 ~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~~~D  176 (479)
T 2frx_A           98 YIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFD  176 (479)
T ss_dssp             EECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCC
T ss_pred             EEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCC
Confidence            44555555666666666  78899999999999999999988756899999999999999999999999864 9999999


Q ss_pred             hhhHHHHHHhCCCCCcEEEEEEeCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          180 AADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       180 ~~~~l~~~~~~~~~~~fDlI~id~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      +.+.....     .++||.|++|++...                         ....++.+.++|||||.|++..+.+.
T Consensus       177 ~~~~~~~~-----~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~  250 (479)
T 2frx_A          177 GRVFGAAV-----PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN  250 (479)
T ss_dssp             STTHHHHS-----TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred             HHHhhhhc-----cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence            97654322     578999999865210                         23578888999999999999877654

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.50  E-value=2.6e-13  Score=124.29  Aligned_cols=102  Identities=23%  Similarity=0.360  Sum_probs=86.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++++|||+|||+|..++.++..   ++.|+++|+|+.+++.|+++++.+++..  ++.++|+.+.++..     .+.||+
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~-----~~~fD~  283 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGL-----EGPFHH  283 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTC-----CCCEEE
T ss_pred             CCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHh-----cCCCCE
Confidence            3789999999999999999985   3569999999999999999999999875  56699998877644     345999


Q ss_pred             EEEeCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          199 AFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       199 I~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |++|++.            ..+..+++.+.++|+|||.|++..+
T Consensus       284 Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          284 VLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             EEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9999873            3466788889999999999996544

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.50  E-value=7.9e-14  Score=119.64  Aligned_cols=105  Identities=11%  Similarity=0.155  Sum_probs=85.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--------CCCCcEEEEEcChhhHHHHHHhC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--------GVSHKVKIKHGLAADSLKALILN  190 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--------g~~~~v~~~~gd~~~~l~~~~~~  190 (279)
                      ++.+|||||||+|.++..+++..+ +.+|+|+|+++.+++.|+++++..        ++. +++++++|+.+.++...  
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~--  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFF--  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTS--
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhc--
Confidence            456899999999999999999886 679999999999999999998876        664 59999999987544221  


Q ss_pred             CCCCcEEEEEEeCCccc-----------hHHHHHHHHccCCCCcEEEEe
Q 023645          191 GEASSYDFAFVDAEKRM-----------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~-----------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                       +.+.+|.|++..+...           +..+++.+.++|+|||+|++.
T Consensus       125 -~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          125 -EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             -CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             -cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence             2578999987643221           257899999999999999883

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.50  E-value=1.9e-13  Score=125.47  Aligned_cols=108  Identities=24%  Similarity=0.372  Sum_probs=92.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++++|||+|||+|..++.++.. + ..+|+++|+++.+++.|+++++.+++.++++++++|+.+.++.+...  ..+||+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~--~~~fD~  292 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK--GEKFDI  292 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT--TCCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh--CCCCCE
Confidence            6789999999999999999986 2 35999999999999999999999998767999999998877654322  368999


Q ss_pred             EEEeCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          199 AFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       199 I~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |++|++.            ..+..++..+.++|+|||++++...
T Consensus       293 Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          293 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            9999874            4567788999999999998888654

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.50  E-value=1.1e-13  Score=120.79  Aligned_cols=104  Identities=17%  Similarity=0.143  Sum_probs=89.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++++|||+|||+|.+++.++...  .++|+++|++|.+++.+++|++.+++.++++++++|+.++.+       .+.||
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-------~~~~D  194 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------ENIAD  194 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------CSCEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-------ccCCC
Confidence            467899999999999999999873  369999999999999999999999999999999999987643       57899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      .|+++.+... .+++..+.++|++||+|.++...
T Consensus       195 ~Vi~~~p~~~-~~~l~~a~~~lk~gG~ih~~~~~  227 (278)
T 3k6r_A          195 RILMGYVVRT-HEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             EEEECCCSSG-GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEECCCCcH-HHHHHHHHHHcCCCCEEEEEeee
Confidence            9999876433 46788899999999999876543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.50  E-value=4.6e-14  Score=119.96  Aligned_cols=107  Identities=10%  Similarity=0.131  Sum_probs=86.9

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHh
Q 023645          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (279)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~  189 (279)
                      ++..+....++.+|||||||+|..+..+++..   .+|+++|+++.+++.|++.+..     +++++++|+.+..+    
T Consensus        33 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~----  100 (250)
T 2p7i_A           33 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQL----  100 (250)
T ss_dssp             HHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCC----
T ss_pred             HHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCc----
Confidence            34444445677899999999999999998764   4899999999999999987642     59999999976521    


Q ss_pred             CCCCCcEEEEEEeCC---ccchHHHHHHHH-ccCCCCcEEEEeCCC
Q 023645          190 NGEASSYDFAFVDAE---KRMYQEYFELLL-QLIRVGGIIVIDNVL  231 (279)
Q Consensus       190 ~~~~~~fDlI~id~~---~~~~~~~l~~~~-~~Lk~gG~lv~dd~~  231 (279)
                         +++||+|++...   ..+...+++++. ++|||||.+++....
T Consensus       101 ---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~  143 (250)
T 2p7i_A          101 ---PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN  143 (250)
T ss_dssp             ---SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             ---CCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence               578999998765   235678999999 999999999997644

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.50  E-value=2.3e-13  Score=123.98  Aligned_cols=117  Identities=12%  Similarity=0.058  Sum_probs=90.6

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHH-------HHhCCC-CcEEEEEcChhhHH
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-------ERAGVS-HKVKIKHGLAADSL  184 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-------~~~g~~-~~v~~~~gd~~~~l  184 (279)
                      ..+...++.+|||||||+|..++.++...+ ..+++|||+++.+++.|+++.       +..|+. .+++|++||+.+..
T Consensus       167 ~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp  245 (438)
T 3uwp_A          167 DEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE  245 (438)
T ss_dssp             HHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHH
T ss_pred             HhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCc
Confidence            334556788999999999999999998765 457999999999999998765       345663 67999999998642


Q ss_pred             HHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          185 KALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       185 ~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      -...    -..||+||++..  ..+....+.++++.|||||.||+.+.+.+.
T Consensus       246 ~~d~----~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~  293 (438)
T 3uwp_A          246 WRER----IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPL  293 (438)
T ss_dssp             HHHH----HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred             cccc----cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence            2100    147999998764  345667788899999999999998766543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.50  E-value=4.1e-14  Score=118.43  Aligned_cols=108  Identities=15%  Similarity=0.155  Sum_probs=86.3

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHh
Q 023645          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (279)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~  189 (279)
                      ++..+....++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...+   +++++++|+.+..+    
T Consensus        42 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~----  111 (216)
T 3ofk_A           42 LLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFST----  111 (216)
T ss_dssp             HHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCCC----
T ss_pred             HHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCCC----
Confidence            3444444556679999999999999999886   3599999999999999999886533   69999999976531    


Q ss_pred             CCCCCcEEEEEEeCCc------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          190 NGEASSYDFAFVDAEK------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       190 ~~~~~~fDlI~id~~~------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                         +++||+|++....      .....+++.+.++|+|||++++...
T Consensus       112 ---~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          112 ---AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             ---SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ---CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence               5899999997542      2235679999999999999998653

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.50  E-value=4.6e-14  Score=120.10  Aligned_cols=106  Identities=13%  Similarity=0.113  Sum_probs=85.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      +.++.+|||+|||+|+.+..+++..+++++|+++|+++++++.++++.+..   .++..+.+|..+.....   ...+.+
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~---~~~~~v  148 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYR---HLVEGV  148 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGT---TTCCCE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccc---cccceE
Confidence            567889999999999999999999877899999999999999998876543   35888888886421100   115789


Q ss_pred             EEEEEeCCc-cchHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAEK-RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~~-~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+||++... .+...++.++.+.|||||.+++.
T Consensus       149 DvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          149 DGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            999998764 44567889999999999999884

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.50  E-value=1.4e-13  Score=117.45  Aligned_cols=117  Identities=18%  Similarity=0.187  Sum_probs=96.9

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .+.+.....+...+...++.+|||+|||+|..+..+++.   ..+|+++|+++++++.|+++.+..++..+++++.+|+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  150 (248)
T 2yvl_A           74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFK  150 (248)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTT
T ss_pred             cccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChh
Confidence            445666666666677778889999999999999999988   47999999999999999999998888777999999987


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +...      .+++||+|+++..  ....+++.+.++|+|||.+++..
T Consensus       151 ~~~~------~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          151 DAEV------PEGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             TSCC------CTTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             hccc------CCCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            6420      1468999999765  34467889999999999999854

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.50  E-value=1.8e-13  Score=119.61  Aligned_cols=101  Identities=15%  Similarity=0.225  Sum_probs=85.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...++  +++++++|+.+...       .++|
T Consensus       118 ~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-------~~~f  185 (286)
T 3m70_A          118 IISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-------QENY  185 (286)
T ss_dssp             HSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-------CSCE
T ss_pred             ccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-------cCCc
Confidence            347789999999999999999986   46999999999999999999998887  69999999976422       4789


Q ss_pred             EEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       197 DlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |+|++...     ......+++.+.++|+|||++++-.
T Consensus       186 D~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             EEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99999764     3446689999999999999977643

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.49  E-value=8.4e-14  Score=117.69  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=83.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH--HHHHhCCCCCc
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEASS  195 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~~~~~~~~~~  195 (279)
                      .++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++.+..   .+++++++|+.+..  ...     .++
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~-----~~~  143 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRAL-----VPK  143 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTT-----CCC
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcc-----cCC
Confidence            35679999999999999999988654689999999999999999887643   46999999997532  111     358


Q ss_pred             EEEEEEeCCccchH-HHHHHHHccCCCCcEEEEe
Q 023645          196 YDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       196 fDlI~id~~~~~~~-~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ||+|+++....... .++..+.++|+|||.+++.
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            99999998754443 4499999999999999986

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.49  E-value=2.7e-13  Score=132.78  Aligned_cols=116  Identities=20%  Similarity=0.259  Sum_probs=96.6

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhHHHHHHhCC
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      .+....++++|||+|||+|.+++.++...  ..+|+++|+|+.+++.|+++++.+|+. ++++++++|+.+.++..    
T Consensus       533 ~l~~~~~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~----  606 (703)
T 3v97_A          533 MLGQMSKGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA----  606 (703)
T ss_dssp             HHHHHCTTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC----
T ss_pred             HHHHhcCCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc----
Confidence            34445578899999999999999998742  357999999999999999999999997 57999999999877654    


Q ss_pred             CCCcEEEEEEeCCc--------------cchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          192 EASSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       192 ~~~~fDlI~id~~~--------------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                       .++||+|++|++.              ..+..++..+.++|+|||+|++....+...
T Consensus       607 -~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~  663 (703)
T 3v97_A          607 -NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFR  663 (703)
T ss_dssp             -CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCC
T ss_pred             -CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc
Confidence             5789999999862              246677888899999999999987664433

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.49  E-value=9.8e-14  Score=117.73  Aligned_cols=105  Identities=13%  Similarity=0.158  Sum_probs=88.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|+|||||+|+.++.+++..+ ..+|+++|+++.+++.|+++++.+|+.++++++++|..+.+..      .++||+
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~------~~~~D~   93 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE------ADNIDT   93 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG------GGCCCE
T ss_pred             CCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc------ccccCE
Confidence            456999999999999999998754 5689999999999999999999999999999999999876531      237999


Q ss_pred             EEEeC-CccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          199 AFVDA-EKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       199 I~id~-~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |++.+ ...-...+++.....|+++|.+|+...
T Consensus        94 IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           94 ITICGMGGRLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             EEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             EEEeCCchHHHHHHHHHHHHHhCcCCEEEEECC
Confidence            87644 344567788888899999999999764

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.49  E-value=1.5e-13  Score=115.93  Aligned_cols=104  Identities=14%  Similarity=0.238  Sum_probs=85.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC----CCcEEEEEcChhhHHHHHHhCCC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----SHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ..++.+|||||||+|..+..+++..++.++|+++|+++.+++.+++++...+.    .++++++++|+.+....      
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------  148 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE------  148 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc------
Confidence            45678999999999999999998864457999999999999999999988764    34699999998643221      


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .++||+|+++.....   +++.+.+.|||||.+++.-
T Consensus       149 ~~~fD~i~~~~~~~~---~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          149 EAPYDAIHVGAAAPV---VPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             GCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEEEE
T ss_pred             CCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEE
Confidence            468999999876544   3467889999999999953

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.49  E-value=2.1e-13  Score=124.64  Aligned_cols=110  Identities=25%  Similarity=0.368  Sum_probs=93.3

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      +... ++.+|||+|||+|..++.++..   ..+|+++|+++.+++.|+++++.+++.+ ++++++|+.+.++.+...  .
T Consensus       205 ~~~~-~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~--~  277 (382)
T 1wxx_A          205 MERF-RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKE--G  277 (382)
T ss_dssp             GGGC-CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHT--T
T ss_pred             HHhc-CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhc--C
Confidence            3344 6779999999999999999987   3699999999999999999999999876 999999999877654322  3


Q ss_pred             CcEEEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          194 SSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       194 ~~fDlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .+||+|++|++.            ..+..++..+.++|+|||++++...
T Consensus       278 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          278 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            689999999864            4567788999999999999998654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.49  E-value=4.4e-14  Score=123.25  Aligned_cols=112  Identities=21%  Similarity=0.227  Sum_probs=88.5

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-CCCCcEEEEEcChhhHHHHH
Q 023645          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd~~~~l~~~  187 (279)
                      ..+...+...++.+|||+|||+|..+..+++.+.++++|+++|+++.+++.|+++++.. |. ++++++++|+.+.++  
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~--  176 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFIS--  176 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCC--
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCc--
Confidence            34444555667789999999999999999987433689999999999999999999887 74 469999999976321  


Q ss_pred             HhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          188 ILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                           +++||+|+++.+  ....+++.+.+.|+|||.+++...
T Consensus       177 -----~~~fD~Vi~~~~--~~~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          177 -----DQMYDAVIADIP--DPWNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             -----SCCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             -----CCCccEEEEcCc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence                 468999999654  345789999999999999998653

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.49  E-value=9.3e-14  Score=119.54  Aligned_cols=107  Identities=8%  Similarity=0.128  Sum_probs=88.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++..  +.+|+++|+++.+++.|+++....   .+++++++|+.+. +.     .+++|
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~~-----~~~~f  121 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK-EF-----PENNF  121 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC-CC-----CTTCE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC-CC-----CCCcE
Confidence            4467799999999999999999875  479999999999999999877543   5699999999754 11     15789


Q ss_pred             EEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          197 DFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       197 DlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      |+|++....     .+...+++.+.++|+|||.+++.+.....
T Consensus       122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  164 (266)
T 3ujc_A          122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE  164 (266)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred             EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            999997652     55678899999999999999998765443

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.49  E-value=6.3e-14  Score=119.54  Aligned_cols=116  Identities=20%  Similarity=0.190  Sum_probs=89.0

Q ss_pred             HHHHHHHHhhc----CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          108 AQLLAMLVQIL----GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       108 ~~~l~~l~~~~----~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      ..++..+....    ++.+|||||||+|..+..+++..  ..+|+++|+++.+++.|++++...+ ..+++++.+|+.+.
T Consensus        64 ~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~  140 (241)
T 2ex4_A           64 RKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDF  140 (241)
T ss_dssp             HHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGC
T ss_pred             HHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhc
Confidence            34455554433    47899999999999999988764  3699999999999999999987654 34589999998654


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          184 LKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      ..      .+++||+|++.....     ....+++.+.++|+|||++++.+...
T Consensus       141 ~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          141 TP------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  188 (241)
T ss_dssp             CC------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             CC------CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence            21      146899999986522     24578999999999999999966544

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.48  E-value=2.4e-13  Score=116.45  Aligned_cols=99  Identities=16%  Similarity=0.255  Sum_probs=82.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++....+.  +++++++|+.+...       .++||+
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD~  108 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF-------KNEFDA  108 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC-------CSCEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhccc-------CCCccE
Confidence            4679999999999999999985   46999999999999999999987775  58999999976421       468999


Q ss_pred             EEEeCC------ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          199 AFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       199 I~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |++...      ......+++.+.++|+|||.++++-
T Consensus       109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            997532      2346678999999999999999864

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.48  E-value=1e-13  Score=126.60  Aligned_cols=118  Identities=21%  Similarity=0.271  Sum_probs=92.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-----C-C-CCcEEEEEcChhhHHHHHHh
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-----G-V-SHKVKIKHGLAADSLKALIL  189 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-----g-~-~~~v~~~~gd~~~~l~~~~~  189 (279)
                      ..++.+|||||||+|..+..+++..+++++|+++|+++.+++.|+++++..     | . ..+++++++|+.+.......
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            456789999999999999999998754789999999999999999988765     3 2 24699999999753110000


Q ss_pred             CCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          190 NGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       190 ~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      ...+++||+|++...   ..+...+++.+.++|||||++++.++....
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~  208 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADR  208 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecccc
Confidence            012578999999865   345678999999999999999998776554

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.48  E-value=1.3e-13  Score=117.35  Aligned_cols=115  Identities=23%  Similarity=0.393  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      ..+.....+...+...++.+|||||||+|..+..+++..+  .+|+++|+++.+++.|+++++..++.+ ++++.+|+..
T Consensus        75 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~  151 (235)
T 1jg1_A           75 SAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSK  151 (235)
T ss_dssp             CCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGG
T ss_pred             ccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCccc
Confidence            3555555666666667788999999999999999999865  799999999999999999999988865 9999999843


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .++.      ..+||+|+++.......   +.+.+.|+|||.+++.-
T Consensus       152 ~~~~------~~~fD~Ii~~~~~~~~~---~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          152 GFPP------KAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             CCGG------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             CCCC------CCCccEEEECCcHHHHH---HHHHHhcCCCcEEEEEE
Confidence            2221      34699999987655433   36788999999999853

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.48  E-value=8.5e-13  Score=118.84  Aligned_cols=111  Identities=13%  Similarity=0.096  Sum_probs=93.2

Q ss_pred             cC-CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LG-AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~-~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .+ +.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++++...++.++++++.+|+.+..+..     .+.|
T Consensus       177 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~  249 (352)
T 3mcz_A          177 FARARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE-----GGAA  249 (352)
T ss_dssp             GTTCCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT-----TCCE
T ss_pred             cCCCCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC-----CCCc
Confidence            44 78999999999999999999987 689999999 8999999999999898888999999997653111     4679


Q ss_pred             EEEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          197 DFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       197 DlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      |+|++....+     .....++.+.+.|+|||.+++.+..++..
T Consensus       250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  293 (352)
T 3mcz_A          250 DVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDD  293 (352)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTT
T ss_pred             cEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence            9999876422     34678999999999999999988776553

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.47  E-value=2.3e-13  Score=123.04  Aligned_cols=120  Identities=19%  Similarity=0.212  Sum_probs=99.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .+.+..+..+..++...++.+|||+|||+|..++.++....+..+++|+|+++.+++.|+++++.+|+. +++++++|+.
T Consensus       186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~  264 (354)
T 3tma_A          186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADAR  264 (354)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGG
T ss_pred             CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChh
Confidence            455666666667777777889999999999999999987623689999999999999999999999998 7999999998


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +....      ...||+|++|++..           .+..+++.+.++|+|||.+++-
T Consensus       265 ~~~~~------~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          265 HLPRF------FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             GGGGT------CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             hCccc------cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            75332      35689999987622           1467888899999999999883

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.47  E-value=3e-13  Score=117.31  Aligned_cols=114  Identities=12%  Similarity=0.097  Sum_probs=88.8

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChh------HHHHHHHHHHHhCCCCcEEEEEcC-hhh-HHHHH
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR------SLEVAKKYYERAGVSHKVKIKHGL-AAD-SLKAL  187 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~------~~~~a~~~~~~~g~~~~v~~~~gd-~~~-~l~~~  187 (279)
                      ...++.+|||||||+|..+..+++..++.++|+++|+++.      +++.|++++...++.++++++++| ... .++. 
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-  118 (275)
T 3bkx_A           40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPI-  118 (275)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGG-
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCC-
Confidence            4457789999999999999999998643689999999997      999999999988887789999998 321 1111 


Q ss_pred             HhCCCCCcEEEEEEeCCc---cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          188 ILNGEASSYDFAFVDAEK---RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~~---~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                          .+++||+|++....   .+...+++.+..+++|||.+++.+....+
T Consensus       119 ----~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~  164 (275)
T 3bkx_A          119 ----ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQP  164 (275)
T ss_dssp             ----TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSC
T ss_pred             ----CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence                15789999987652   33445666777777789999998766543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.47  E-value=4.5e-13  Score=117.36  Aligned_cols=119  Identities=18%  Similarity=0.175  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC---CcEEEEEcChh
Q 023645          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAA  181 (279)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~---~~v~~~~gd~~  181 (279)
                      .....++..++...++.+|||||||+|..+..+++.   +.+|+++|+|+.+++.|+++....+..   .++.+..+|+.
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~  119 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL  119 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence            444556666666677889999999999999999986   459999999999999999887544332   35789999987


Q ss_pred             hHHHHHHhCCCCCcEEEEEEe-CC---ccc-------hHHHHHHHHccCCCCcEEEEeC
Q 023645          182 DSLKALILNGEASSYDFAFVD-AE---KRM-------YQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id-~~---~~~-------~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +....+   ..+++||+|++. ..   ..+       ...+++.+.++|||||++++..
T Consensus       120 ~~~~~~---~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          120 TLDKDV---PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             GHHHHS---CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hCcccc---ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            654322   115799999996 32   222       6789999999999999999864

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.47  E-value=1.3e-13  Score=116.99  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=82.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.++++.+..   .++.++.+|+.+......  . .++||
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~--~-~~~~D  145 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYAN--I-VEKVD  145 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTT--T-SCCEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccc--c-CccEE
Confidence            3567999999999999999999876 689999999999999999887643   569999999875211010  0 36899


Q ss_pred             EEEEeCC-ccchHHHHHHHHccCCCCcEEEEe
Q 023645          198 FAFVDAE-KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       198 lI~id~~-~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +|+.+.. ......+++.+.+.|+|||.+++.
T Consensus       146 ~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          146 VIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            9997754 333467799999999999999985

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.47  E-value=2.7e-13  Score=115.49  Aligned_cols=106  Identities=12%  Similarity=0.064  Sum_probs=79.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++...+..+..   .++.++++|+.......   ...++|
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~---~~~~~~  147 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYK---SVVENV  147 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTT---TTCCCE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhh---ccccce
Confidence            456789999999999999999998766899999999999875554444332   35999999986431100   014689


Q ss_pred             EEEEEeCCccchHHHHH-HHHccCCCCcEEEEe
Q 023645          197 DFAFVDAEKRMYQEYFE-LLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~-~~~~~Lk~gG~lv~d  228 (279)
                      |+||+|.........+. .+.+.|||||.+++.
T Consensus       148 D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          148 DVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             EEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            99999987666555554 445599999999985

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.46  E-value=2.7e-13  Score=115.95  Aligned_cols=111  Identities=10%  Similarity=0.142  Sum_probs=90.9

Q ss_pred             HHHhhc-CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645          113 MLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       113 ~l~~~~-~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      .+.... ++.+|||||||+|+.++.+++..+ ..+|+++|+++.+++.|+++++.+|+.++++++++|..+.+..     
T Consensus        14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~-----   87 (244)
T 3gnl_A           14 KVASYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK-----   87 (244)
T ss_dssp             HHHTTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-----
T ss_pred             HHHHhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc-----
Confidence            344433 456999999999999999998754 5689999999999999999999999998999999999876431     


Q ss_pred             CCCcEEEEEEeC-CccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          192 EASSYDFAFVDA-EKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       192 ~~~~fDlI~id~-~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                       ..+||+|++.+ ...-...+++.....|+++|.+|+.-.
T Consensus        88 -~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A           88 -KDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             -GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             -cccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence             13599987643 445577888888999999999999754

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.46  E-value=2.8e-13  Score=123.72  Aligned_cols=114  Identities=18%  Similarity=0.295  Sum_probs=91.4

Q ss_pred             CHHHHHHHHHHHhh-----cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645          104 SPDQAQLLAMLVQI-----LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (279)
Q Consensus       104 ~~~~~~~l~~l~~~-----~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (279)
                      .+....++..+...     .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++++.+++.  ++++++
T Consensus       213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~  287 (381)
T 3dmg_A          213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK--AQALHS  287 (381)
T ss_dssp             CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEEC
T ss_pred             CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEc
Confidence            34444455555443     25679999999999999999986   469999999999999999999988874  899999


Q ss_pred             ChhhHHHHHHhCCCCCcEEEEEEeCCc--------cchHHHHHHHHccCCCCcEEEEe
Q 023645          179 LAADSLKALILNGEASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       179 d~~~~l~~~~~~~~~~~fDlI~id~~~--------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+.+....      +++||+|+++.+.        .....+++.+.+.|+|||.+++.
T Consensus       288 D~~~~~~~------~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          288 DVDEALTE------EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             STTTTSCT------TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhcccc------CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            99765321      3799999998542        33567899999999999999984

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.46  E-value=2.7e-13  Score=113.18  Aligned_cols=110  Identities=16%  Similarity=0.186  Sum_probs=88.0

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      ..++..+....++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++    .+. .+++++++|+.+..   
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~---  103 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWT---  103 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCC---
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCC---
Confidence            344455555666789999999999999999987   4699999999999999988    444 35999999997651   


Q ss_pred             HhCCCCCcEEEEEEeCCccc-----hHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          188 ILNGEASSYDFAFVDAEKRM-----YQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~~~~-----~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                          .+++||+|++......     ...+++.+.++|+|||.+++.+...
T Consensus       104 ----~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          104 ----PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             ----CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             ----CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence                1689999999765322     3678999999999999999976643

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.46  E-value=1e-12  Score=119.46  Aligned_cols=107  Identities=14%  Similarity=0.152  Sum_probs=91.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++++...++.++++++.+|+.+..        ...||
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--------p~~~D  270 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI--------PDGAD  270 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC--------CSSCS
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC--------CCCce
Confidence            4568999999999999999999987 789999999 9999999999999998889999999997322        23799


Q ss_pred             EEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          198 FAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       198 lI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      +|++.....     .....++.+.+.|+|||.+++.+..++.
T Consensus       271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  312 (369)
T 3gwz_A          271 VYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE  312 (369)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred             EEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            999876522     2336899999999999999998877655

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.46  E-value=2.4e-13  Score=112.57  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=84.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      .+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...+.  +++++++|+.+..  .    .+++||+|+
T Consensus        31 ~~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~----~~~~fD~v~   99 (202)
T 2kw5_A           31 GKILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFD--I----VADAWEGIV   99 (202)
T ss_dssp             SEEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBS--C----CTTTCSEEE
T ss_pred             CCEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcC--C----CcCCccEEE
Confidence            39999999999999999875   46999999999999999999988776  5999999987541  1    147899999


Q ss_pred             EeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          201 VDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       201 id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      +...   ......+++.+.++|+|||.+++......
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A          100 SIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             EEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            8643   23567789999999999999999865543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.45  E-value=3.6e-13  Score=114.35  Aligned_cols=109  Identities=12%  Similarity=0.152  Sum_probs=87.8

Q ss_pred             HHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645          108 AQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (279)
Q Consensus       108 ~~~l~~l~~~~--~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (279)
                      ...+..++...  ++.+|||||||+|..+..+++.   +.+++++|+++.+++.+++++...+.  +++++++|+.+...
T Consensus        24 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~   98 (246)
T 1y8c_A           24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI   98 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC
T ss_pred             HHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCc
Confidence            34444444433  6789999999999999999886   46999999999999999999987765  58999999875421


Q ss_pred             HHHhCCCCCcEEEEEEeC-Cc------cchHHHHHHHHccCCCCcEEEEe
Q 023645          186 ALILNGEASSYDFAFVDA-EK------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       186 ~~~~~~~~~~fDlI~id~-~~------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                             .++||+|++.. ..      .+...+++.+.++|+|||.++++
T Consensus        99 -------~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           99 -------NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             -------SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -------cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                   37899999976 31      45678899999999999999984

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.45  E-value=1.1e-13  Score=119.84  Aligned_cols=94  Identities=18%  Similarity=0.203  Sum_probs=76.1

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      ..+|||||||+|..+..++..   ..+|+|+|+|+.+++.|++       ..+++++++|+.+..  +    .+++||+|
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~~--~----~~~sfD~v  103 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDTG--L----PPASVDVA  103 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCCC--C----CSSCEEEE
T ss_pred             CCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhhc--c----cCCcccEE
Confidence            468999999999999999976   3699999999999877653       246999999996541  1    26899999


Q ss_pred             EEeCC--ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          200 FVDAE--KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       200 ~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ++...  .-+...++.++.++|||||+|++-.
T Consensus       104 ~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          104 IAAQAMHWFDLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             EECSCCTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeeehhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence            98654  3346789999999999999998743

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.45  E-value=3.2e-13  Score=114.24  Aligned_cols=112  Identities=18%  Similarity=0.236  Sum_probs=89.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      ..+.....+...+...++.+|||||||+|..+..+++..   .+|+++|+++.+++.+++++...+   +++++.+|+.+
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~  127 (231)
T 1vbf_A           54 TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTL  127 (231)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccc
Confidence            345555555555566677899999999999999999874   699999999999999999987655   69999999976


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .++.      .++||+|+++.......   +.+.+.|+|||.+++..
T Consensus       128 ~~~~------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          128 GYEE------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             CCGG------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             cccc------CCCccEEEECCcHHHHH---HHHHHHcCCCcEEEEEE
Confidence            3321      47899999987655432   46889999999999864

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.45  E-value=2.8e-13  Score=123.49  Aligned_cols=106  Identities=13%  Similarity=0.172  Sum_probs=88.5

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++++|||||||+|..+..+++..  ..+|+++|++ .+++.|+++++..++.++++++++|+.+...       .++
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~  129 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL-------PEK  129 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTT--CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC-------SSC
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcC--CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc-------CCc
Confidence            34567899999999999999999862  3499999999 9999999999999999899999999976421       378


Q ss_pred             EEEEEEeCC------ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          196 YDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       196 fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ||+|+++..      ......++..+.++|+|||+++++...
T Consensus       130 ~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          130 VDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             EEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             ceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            999998652      134667888889999999999986654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.45  E-value=3.2e-13  Score=114.68  Aligned_cols=103  Identities=17%  Similarity=0.137  Sum_probs=82.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCc
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~  195 (279)
                      .++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+.++.+..   .+++++++|+.+.  ++..     .++
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~-----~~~  147 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRML-----IAM  147 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGG-----CCC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhccc-----CCc
Confidence            45679999999999999999998744689999999999888887777654   4699999999763  2222     578


Q ss_pred             EEEEEEeCCccc-hHHHHHHHHccCCCCcEEEEe
Q 023645          196 YDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       196 fDlI~id~~~~~-~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ||+|+++....+ ...++..+.+.|+|||.+++.
T Consensus       148 ~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          148 VDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEE
Confidence            999999876333 345578899999999999994

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.45  E-value=2.8e-13  Score=122.33  Aligned_cols=106  Identities=17%  Similarity=0.190  Sum_probs=88.1

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++++|||||||+|..+..+++. + ..+|+|+|++ ++++.|+++++..++.++++++++|+.+..  +    ..++
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~  133 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVE--L----PVEK  133 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCC--C----SSSC
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHcc--C----CCCc
Confidence            3467889999999999999999987 3 4699999999 599999999999999888999999997651  1    1479


Q ss_pred             EEEEEEeCC------ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          196 YDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       196 fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ||+|+++..      ......++..+.++|||||+++.+..
T Consensus       134 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  174 (349)
T 3q7e_A          134 VDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRA  174 (349)
T ss_dssp             EEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             eEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccc
Confidence            999998642      34567788888999999999985443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.45  E-value=4.5e-13  Score=110.94  Aligned_cols=109  Identities=16%  Similarity=0.092  Sum_probs=86.5

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      ..++..+.... +.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++.      .+++++++|+.+..  .
T Consensus        31 ~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~--~   98 (203)
T 3h2b_A           31 RVLIEPWATGV-DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLS--D   98 (203)
T ss_dssp             HHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGG--G
T ss_pred             HHHHHHHhccC-CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccc--c
Confidence            34445544433 779999999999999999986   469999999999999998863      25899999997642  1


Q ss_pred             HhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          188 ILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                          .+++||+|++...     ..+...+++.+.++|+|||.+++.....
T Consensus        99 ----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  144 (203)
T 3h2b_A           99 ----SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSG  144 (203)
T ss_dssp             ----SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred             ----CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence                1579999998754     2367889999999999999999976543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.45  E-value=1.6e-13  Score=115.01  Aligned_cols=110  Identities=19%  Similarity=0.155  Sum_probs=86.1

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~  188 (279)
                      .++..+. ..++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++.     .+++++++|+.+...   
T Consensus        36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~---  103 (220)
T 3hnr_A           36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEV---  103 (220)
T ss_dssp             HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCC---
T ss_pred             HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCC---
Confidence            3444333 347789999999999999999986   5799999999999999988764     468999999875421   


Q ss_pred             hCCCCCcEEEEEEeCCccc---h--HHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          189 LNGEASSYDFAFVDAEKRM---Y--QEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~~~~---~--~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                          .++||+|++......   .  ..+++.+.+.|||||.+++.+..+..
T Consensus       104 ----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  150 (220)
T 3hnr_A          104 ----PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFAD  150 (220)
T ss_dssp             ----CSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSS
T ss_pred             ----CCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccC
Confidence                378999999865322   2  23899999999999999998765543

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.45  E-value=3.7e-14  Score=123.14  Aligned_cols=96  Identities=10%  Similarity=0.119  Sum_probs=79.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--CC-CCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~-~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      .+++|||||||+|..+..+++. +  .+|+++|+++++++.|++++...  ++ .++++++.+|+.+.+         ++
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---------~~  139 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---------KK  139 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---------CC
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---------hh
Confidence            5679999999999999999886 4  79999999999999999876431  12 357999999997542         57


Q ss_pred             EEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ||+|++|....  ..+++.+.+.|+|||++++.
T Consensus       140 fD~Ii~d~~dp--~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          140 YDLIFCLQEPD--IHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             EEEEEESSCCC--HHHHHHHHTTEEEEEEEEEE
T ss_pred             CCEEEECCCCh--HHHHHHHHHhcCCCcEEEEE
Confidence            99999996533  35899999999999999985

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.44  E-value=2e-13  Score=117.03  Aligned_cols=99  Identities=13%  Similarity=0.186  Sum_probs=82.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++..+  .+|+++|+++.+++.|+++..    ..+++++++|+.+.. .     .+++||
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~-~-----~~~~fD  110 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIA-I-----EPDAYN  110 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCC-C-----CTTCEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCC-C-----CCCCeE
Confidence            4678999999999999999998743  399999999999999998765    356999999996532 1     157999


Q ss_pred             EEEEeCC---ccchHHHHHHHHccCCCCcEEEEe
Q 023645          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       198 lI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +|++...   ..+...+++.+.++|+|||.+++.
T Consensus       111 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          111 VVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            9999765   345778999999999999999996

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.44  E-value=7.6e-14  Score=119.91  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHH--CCCCCEEEEEeCChhHHHHHHHHHHHh---CCCCc---------------------
Q 023645          119 GAQRCIEVGVYTGYSSLAIALV--LPESGCLVACERDARSLEVAKKYYERA---GVSHK---------------------  172 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~--~~~~~~v~~iD~s~~~~~~a~~~~~~~---g~~~~---------------------  172 (279)
                      ++.+|||+|||+|..+..+++.  .+ +.+|+|+|+++.+++.|++++...   ++.++                     
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccC-CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence            4569999999999999999987  43 579999999999999999988765   44333                     


Q ss_pred             ----EE-------------EEEcChhhHHHHHHhCCCCCcEEEEEEeCCc------------cchHHHHHHHHccCCCCc
Q 023645          173 ----VK-------------IKHGLAADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGG  223 (279)
Q Consensus       173 ----v~-------------~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~------------~~~~~~l~~~~~~Lk~gG  223 (279)
                          ++             ++++|+.+..+..... ...+||+|+++.+.            ..+..+++.+.++|+|||
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  208 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA  208 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred             hhhhhhhhccccccccccceeeccccccccccccc-CCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCc
Confidence                66             9999987643210000 03589999998642            234578999999999999


Q ss_pred             EEEEeC
Q 023645          224 IIVIDN  229 (279)
Q Consensus       224 ~lv~dd  229 (279)
                      ++++.+
T Consensus       209 ~l~~~~  214 (250)
T 1o9g_A          209 VIAVTD  214 (250)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            999843

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.44  E-value=6.6e-13  Score=120.39  Aligned_cols=111  Identities=14%  Similarity=0.119  Sum_probs=91.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++..| +.+++++|+ +.+++.|++++...++.++++++.+|+.+....+     .++||
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----p~~~D  250 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF-----PTGFD  250 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHST-TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC-----CCCCS
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC-----CCCcC
Confidence            4678999999999999999999987 689999999 9999999999998888788999999997531001     36899


Q ss_pred             EEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          198 FAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       198 lI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      +|++....     +....+++++.+.|+|||.|++.+..++..
T Consensus       251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  293 (363)
T 3dp7_A          251 AVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQ  293 (363)
T ss_dssp             EEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSC
T ss_pred             EEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCc
Confidence            99986542     234577999999999999999988776553

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.44  E-value=1.7e-12  Score=115.81  Aligned_cols=108  Identities=16%  Similarity=0.266  Sum_probs=90.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..+..+++..| +.+++++|++ .+++.|++++...++.++++++.+|+.+.  ..     .+.||
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-----~~~~D  234 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY-----GNDYD  234 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC-----CSCEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC-----CCCCc
Confidence            5668999999999999999999986 6799999999 99999999999999888899999999753  11     34599


Q ss_pred             EEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          198 FAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       198 lI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      +|++....     .....+++.+.+.|+|||.+++.+...+.
T Consensus       235 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  276 (335)
T 2r3s_A          235 LVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNS  276 (335)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCT
T ss_pred             EEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Confidence            99986542     33468899999999999988887766543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.44  E-value=3.5e-13  Score=111.92  Aligned_cols=115  Identities=14%  Similarity=0.154  Sum_probs=89.0

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHH
Q 023645          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (279)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (279)
                      ...++..+....++.+|||+|||+|..+..++...  +.+|+++|+++.+++.+++++...+.  +++++++|+.+..  
T Consensus        11 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--   84 (209)
T 2p8j_A           11 LYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLP--   84 (209)
T ss_dssp             HHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCC--
T ss_pred             HHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCC--
Confidence            34455555555677899999999999865554442  57999999999999999999887663  5889999987531  


Q ss_pred             HHhCCCCCcEEEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          187 LILNGEASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       187 ~~~~~~~~~fDlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      .    .+++||+|++....     .+...+++.+.+.|+|||++++....
T Consensus        85 ~----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           85 F----KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             S----CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             C----CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            1    14789999986542     45678899999999999999997654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.44  E-value=3e-13  Score=112.79  Aligned_cols=98  Identities=14%  Similarity=0.178  Sum_probs=81.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++       +++++.+|+.+..  .     +++|
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--~-----~~~f  103 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--A-----IDAY  103 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--C-----CSCE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--C-----CCcE
Confidence            345779999999999999999986   469999999999999999887       2677888886543  1     6899


Q ss_pred             EEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          197 DFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       197 DlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      |+|++....     .....+++.+.++|+|||++++....
T Consensus       104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          104 DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            999997652     25568899999999999999997443

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.44  E-value=2e-13  Score=115.52  Aligned_cols=116  Identities=18%  Similarity=0.235  Sum_probs=88.0

Q ss_pred             CHHHH-HHHHHHH-hhcCCCEEEEEcCccCHHHHHHHHHCCC-----CCEEEEEeCChhHHHHHHHHHHHhCC----CCc
Q 023645          104 SPDQA-QLLAMLV-QILGAQRCIEVGVYTGYSSLAIALVLPE-----SGCLVACERDARSLEVAKKYYERAGV----SHK  172 (279)
Q Consensus       104 ~~~~~-~~l~~l~-~~~~~~~VLEiG~G~G~~t~~la~~~~~-----~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~  172 (279)
                      .+... .++..+. ...++.+|||||||+|+.+..+++..+.     .++|+++|+++++++.|++++...+.    ..+
T Consensus        67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  146 (227)
T 1r18_A           67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  146 (227)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence            44433 3333333 3456789999999999999999986542     25999999999999999999887652    235


Q ss_pred             EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++++.+|..+.++.      .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       147 v~~~~~d~~~~~~~------~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          147 LLIVEGDGRKGYPP------NAPYNAIHVGAAAPDT---PTELINQLASGGRLIVP  193 (227)
T ss_dssp             EEEEESCGGGCCGG------GCSEEEEEECSCBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             eEEEECCcccCCCc------CCCccEEEECCchHHH---HHHHHHHhcCCCEEEEE
Confidence            99999999763321      3689999998875543   36788999999999985

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.43  E-value=6.7e-13  Score=116.10  Aligned_cols=106  Identities=11%  Similarity=0.045  Sum_probs=87.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|++++...+...+++++++|+.+....     .+++||
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~fD  135 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-----LGKEFD  135 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-----CSSCEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-----CCCCcC
Confidence            46789999999999999998876 2 4599999999999999999999888777899999999754100     157899


Q ss_pred             EEEEeCCc-------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          198 FAFVDAEK-------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       198 lI~id~~~-------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +|++....       .+...+++.+.++|+|||.+++...
T Consensus       136 ~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          136 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            99987553       3456789999999999999998653

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.43  E-value=2.6e-12  Score=116.48  Aligned_cols=104  Identities=19%  Similarity=0.180  Sum_probs=88.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.|++++...++.++++++.+|+.+.+        ...|
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~  249 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL--------PVTA  249 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SCCE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC--------CCCC
Confidence            34678999999999999999999986 689999999 9999999999999898878999999987532        2359


Q ss_pred             EEEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCC
Q 023645          197 DFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       197 DlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |+|++.....     ....+++.+.+.|+|||.+++.+.
T Consensus       250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            9999876532     224789999999999999888766

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.43  E-value=7.8e-13  Score=119.34  Aligned_cols=104  Identities=13%  Similarity=0.140  Sum_probs=85.8

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ....++++|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++.+++.++++++++|+.+..  +     .+
T Consensus        46 l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~-----~~  115 (348)
T 2y1w_A           46 HTDFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L-----PE  115 (348)
T ss_dssp             GGGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C-----SS
T ss_pred             cccCCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC--C-----CC
Confidence            34457789999999999999999885 3 46999999996 88999999999999888999999997641  1     36


Q ss_pred             cEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +||+|++...     .+.....+..+.++|+|||++++.
T Consensus       116 ~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          116 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             ceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            8999998753     244567788889999999999854

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.42  E-value=4.1e-13  Score=115.86  Aligned_cols=98  Identities=16%  Similarity=0.154  Sum_probs=80.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++.      +++++++|+.+...       +++||+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~~fD~  113 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-------GRRFSA  113 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-------SCCEEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-------cCCcCE
Confidence            4579999999999999999876   4599999999999999998753      58999999976421       478999


Q ss_pred             EEEeC-Cc------cchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          199 AFVDA-EK------RMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       199 I~id~-~~------~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      |++.. ..      .....+++.+.++|+|||.++++....
T Consensus       114 v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  154 (263)
T 3pfg_A          114 VTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWF  154 (263)
T ss_dssp             EEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             EEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            99976 32      345678999999999999999986433

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.42  E-value=6.9e-13  Score=111.45  Aligned_cols=102  Identities=12%  Similarity=0.146  Sum_probs=84.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||+|||+|..+..+++..+   +++++|+++.+++.|++++...+  .+++++++|+.+..  .    .+++||+
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--~----~~~~~D~  106 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS--F----EDKTFDY  106 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC--S----CTTCEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCC--C----CCCcEEE
Confidence            467999999999999999988743   99999999999999999998766  46999999987531  1    1468999


Q ss_pred             EEEeCC--c---cchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          199 AFVDAE--K---RMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       199 I~id~~--~---~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      |++...  .   .+...+++.+.++|+|||.+++.+..
T Consensus       107 v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          107 VIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            998765  2   24567899999999999999987654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.42  E-value=2.6e-13  Score=116.42  Aligned_cols=98  Identities=14%  Similarity=0.124  Sum_probs=82.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++..| +++++++|+++.+++.++++      ..+++++++|+.+..  .     +++||
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~--~-----~~~fD   97 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK--P-----AQKAD   97 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC--C-----SSCEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC--c-----cCCcC
Confidence            4567999999999999999999876 67999999999999999887      135899999987543  1     57899


Q ss_pred             EEEEeCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       198 lI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +|++...   ..+...+++.+.++|+|||.+++..
T Consensus        98 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           98 LLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             EEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999765   3456788999999999999999965

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.42  E-value=7.9e-13  Score=118.95  Aligned_cols=105  Identities=14%  Similarity=0.146  Sum_probs=85.8

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      .....++++|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++++|+.+..  +    ..
T Consensus        59 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~  129 (340)
T 2fyt_A           59 NPHIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH--L----PV  129 (340)
T ss_dssp             CGGGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC--C----SC
T ss_pred             hhhhcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc--C----CC
Confidence            334567789999999999999999986 3 36999999996 99999999999999778999999997641  1    14


Q ss_pred             CcEEEEEEeCC------ccchHHHHHHHHccCCCCcEEEE
Q 023645          194 SSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       194 ~~fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ++||+|+++..      ......++..+.++|||||.++.
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence            78999998651      23456788888999999999984

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.42  E-value=3.1e-13  Score=115.12  Aligned_cols=98  Identities=14%  Similarity=0.127  Sum_probs=80.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++         ++++.+|+.+.+..+    .+++||
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~----~~~~fD  103 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL----PDKYLD  103 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS----CTTCBS
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc----CCCCee
Confidence            45689999999999999999987   46899999999999988774         688999987765332    157999


Q ss_pred             EEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +|++...     ..+...+++.+.++|||||.+++....
T Consensus       104 ~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          104 GVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             EEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            9998764     224578999999999999999997654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.42  E-value=6.6e-13  Score=114.08  Aligned_cols=101  Identities=23%  Similarity=0.212  Sum_probs=83.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++  .+...+++++++|+.+..  +    .+++|
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~~~d~~~~~--~----~~~~f  105 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI--AGVDRKVQVVQADARAIP--L----PDESV  105 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT--TTSCTTEEEEESCTTSCC--S----CTTCE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh--hccCCceEEEEcccccCC--C----CCCCe
Confidence            346789999999999999999975   479999999999999999987  233456999999996532  1    15789


Q ss_pred             EEEEEeCCc---cchHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAEK---RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~~---~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+|++....   .+...+++.+.++|+|||.+++.
T Consensus       106 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          106 HGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            999987652   34678999999999999999986

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.42  E-value=1.6e-13  Score=118.03  Aligned_cols=121  Identities=17%  Similarity=0.159  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          105 PDQAQLLAMLVQIL-----GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       105 ~~~~~~l~~l~~~~-----~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      +....++..++...     ++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.|+++++..++.++++++++|
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  124 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP  124 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcc
Confidence            45555666665433     467999999999999999988765 579999999999999999999999998889999999


Q ss_pred             hhhH-HHHHHhCCCCCcEEEEEEeCCccch------------------HHHHHHHHccCCCCcEEEE
Q 023645          180 AADS-LKALILNGEASSYDFAFVDAEKRMY------------------QEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       180 ~~~~-l~~~~~~~~~~~fDlI~id~~~~~~------------------~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +.+. ...+.. ..+++||+|+++.+....                  ...+..+.++|||||.+.+
T Consensus       125 ~~~~~~~~~~~-~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          125 QKTLLMDALKE-ESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             TTCSSTTTSTT-CCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred             hhhhhhhhhhc-ccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence            7652 211110 001589999998552211                  1234455677788776644

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.42  E-value=1.4e-12  Score=115.41  Aligned_cols=110  Identities=14%  Similarity=0.135  Sum_probs=78.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-----cEEEEEcChhhH--HHHHHhCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGLAADS--LKALILNG  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-----~v~~~~gd~~~~--l~~~~~~~  191 (279)
                      ++.+|||||||+|..+..++...  .++|+|+|+|+.+++.|++.+...+...     .+++.++|+...  ...+....
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            35799999999998666555432  4699999999999999999988766431     267878777221  01111111


Q ss_pred             CCCcEEEEEEeCCc------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          192 EASSYDFAFVDAEK------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       192 ~~~~fDlI~id~~~------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .+++||+|++....      .+...+++.+.++|||||++++...
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            25799999875431      3457899999999999999998654

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.42  E-value=1.7e-12  Score=118.33  Aligned_cols=104  Identities=17%  Similarity=0.202  Sum_probs=89.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh---------------CCCCcEEEEEcChhh
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---------------GVSHKVKIKHGLAAD  182 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---------------g~~~~v~~~~gd~~~  182 (279)
                      .++.+|||+|||+|..++.++...+ ..+|+++|+++++++.+++|++.+               ++.+ ++++++|+.+
T Consensus        46 ~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~  123 (378)
T 2dul_A           46 LNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANR  123 (378)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHH
T ss_pred             cCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHH
Confidence            3678999999999999999999876 568999999999999999999998               7765 9999999988


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .+...     .++||+|++|+. .....+++.+.+.|++||++++..
T Consensus       124 ~~~~~-----~~~fD~I~lDP~-~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          124 LMAER-----HRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHS-----TTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhc-----cCCCCEEEeCCC-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            76543     368999999874 334688999999999999988854

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.41  E-value=2e-13  Score=120.23  Aligned_cols=103  Identities=10%  Similarity=0.117  Sum_probs=84.2

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC--CcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      +.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...+..  .+++++++|+.+...       +++||
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~fD  152 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-------DKRFG  152 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-------SCCEE
T ss_pred             CCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-------CCCcC
Confidence            459999999999999999986   468999999999999999999876532  569999999976421       57899


Q ss_pred             EEEEeCC------ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          198 FAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       198 lI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      +|++...      ......+++.+.++|+|||.|++.....
T Consensus       153 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          153 TVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             EEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence            9986421      2245788999999999999999976543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.41  E-value=1e-12  Score=117.58  Aligned_cols=105  Identities=21%  Similarity=0.256  Sum_probs=85.9

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ....++++|||||||+|..+..+++. + ..+|+++|++ .+++.|+++++..++.++++++++|+.+..  +    ..+
T Consensus        34 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~  104 (328)
T 1g6q_1           34 KDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--L----PFP  104 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--C----SSS
T ss_pred             HhhcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--C----CCC
Confidence            34557789999999999999999886 3 3599999999 599999999999999888999999997641  1    137


Q ss_pred             cEEEEEEeCC------ccchHHHHHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +||+|+++..      ......++..+.++|+|||.++.+
T Consensus       105 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~  144 (328)
T 1g6q_1          105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             cccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence            8999998742      233567888889999999999854

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.41  E-value=6.9e-13  Score=118.64  Aligned_cols=107  Identities=12%  Similarity=0.083  Sum_probs=90.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      +..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++++...++.++++++.+|+.+..        ..+||+
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------p~~~D~  238 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL--------PAGAGG  238 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------CCSCSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC--------CCCCcE
Confidence            457999999999999999999987 689999999 9999999999999998889999999996322        238999


Q ss_pred             EEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          199 AFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       199 I~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      |++....+     .....++++.+.|+|||.+++.+..++..
T Consensus       239 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  280 (332)
T 3i53_A          239 YVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE  280 (332)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC--
T ss_pred             EEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC
Confidence            99875422     24678999999999999999988776654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.41  E-value=2.3e-13  Score=115.47  Aligned_cols=103  Identities=12%  Similarity=0.040  Sum_probs=80.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCC-hhHHHHH---HHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERD-ARSLEVA---KKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s-~~~~~~a---~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      .++.+|||||||+|..+..+++..+ +.+|+|+|+| +.+++.|   +++....++. +++++++|+.+.....     .
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~-----~   95 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFEL-----K   95 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGG-----T
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhc-----c
Confidence            3567999999999999999997655 7899999999 5666665   7777777775 4999999997652211     3


Q ss_pred             CcEEEEEEeCCcc--------chHHHHHHHHccCCCCcEEEE
Q 023645          194 SSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       194 ~~fDlI~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +.+|.|++..+..        ....+++++.++|||||.+++
T Consensus        96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           96 NIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             TCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             CeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            6788888765421        235689999999999999998

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.41  E-value=1.1e-12  Score=109.94  Aligned_cols=107  Identities=17%  Similarity=0.178  Sum_probs=83.5

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ......++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++       .++.++.+|+.+.....  ...
T Consensus        46 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~--~~~  113 (227)
T 3e8s_A           46 LAILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAK--VPV  113 (227)
T ss_dssp             HHHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTC--SCC
T ss_pred             HHhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccc--ccc
Confidence            3344456789999999999999999986   46999999999999999886       34678888886542110  011


Q ss_pred             CCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          193 ASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       193 ~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ..+||+|++...  ..+...+++.+.++|+|||++++.+..
T Consensus       114 ~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~  154 (227)
T 3e8s_A          114 GKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLH  154 (227)
T ss_dssp             CCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecC
Confidence            456999998754  556778999999999999999997653

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.41  E-value=7e-13  Score=120.48  Aligned_cols=104  Identities=18%  Similarity=0.222  Sum_probs=84.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++++|||||||+|..+++++++.  ..+|++||.++ +++.|+++++.+|+.++|+++++++.+..  +     +++|
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~aG--A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~--l-----pe~~  150 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQAG--ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE--L-----PEQV  150 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC--C-----SSCE
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHhC--CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec--C-----Cccc
Confidence            4578899999999999999888763  25899999996 88999999999999999999999997641  1     5789


Q ss_pred             EEEEEeCC------ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          197 DFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       197 DlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |+|++...      ......++....++|+|||.++.+..
T Consensus       151 DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~a  190 (376)
T 4hc4_A          151 DAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASA  190 (376)
T ss_dssp             EEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             cEEEeecccccccccchhhhHHHHHHhhCCCCceECCccc
Confidence            99987421      23456677777799999999986544

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.41  E-value=1.7e-12  Score=116.04  Aligned_cols=104  Identities=18%  Similarity=0.126  Sum_probs=88.9

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      .+|||||||+|..+..+++..| +.+++++|+ +.+++.|++++...++.++++++.+|+.+.   .     .++||+|+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~-----~~~~D~v~  238 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---V-----PSNGDIYL  238 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C-----CSSCSEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C-----CCCCCEEE
Confidence            8999999999999999999987 679999999 999999999998888777899999999752   1     46799999


Q ss_pred             EeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          201 VDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       201 id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      +....+     .....++.+.+.|+|||.+++.+..++.
T Consensus       239 ~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  277 (334)
T 2ip2_A          239 LSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA  277 (334)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred             EchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            876532     2347899999999999999998876654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.41  E-value=8.2e-13  Score=106.31  Aligned_cols=101  Identities=12%  Similarity=0.052  Sum_probs=82.2

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++      ..+++++.+| ...        .+++
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d-~~~--------~~~~   75 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK------FDSVITLSDP-KEI--------PDNS   75 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH------CTTSEEESSG-GGS--------CTTC
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC-CCC--------CCCc
Confidence            44567799999999999999999864   4999999999999999887      2368999888 211        1578


Q ss_pred             EEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       196 fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      ||+|++...   ..+...+++.+.+.|+|||.+++.+.....
T Consensus        76 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  117 (170)
T 3i9f_A           76 VDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKEN  117 (170)
T ss_dssp             EEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred             eEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccc
Confidence            999998765   345678999999999999999998765443

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.40  E-value=5.3e-12  Score=110.21  Aligned_cols=110  Identities=10%  Similarity=0.047  Sum_probs=84.2

Q ss_pred             CCCEEEEEcCcc---CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH-----HhC
Q 023645          119 GAQRCIEVGVYT---GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL-----ILN  190 (279)
Q Consensus       119 ~~~~VLEiG~G~---G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~-----~~~  190 (279)
                      +..+|||||||+   |..+..+.+..| +++|+++|+|+.+++.|++++..   ..+++++++|+.+....+     ...
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc
Confidence            457999999999   988777766666 68999999999999999998842   356999999997532110     011


Q ss_pred             CCCCcEEEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          191 GEASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       191 ~~~~~fDlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      .+..+||+|++....     ......++++.+.|+|||+|++.+...
T Consensus       153 ~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          153 IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            112589999987542     236789999999999999999988654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=6.3e-13  Score=115.83  Aligned_cols=101  Identities=18%  Similarity=0.205  Sum_probs=83.2

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      .+...++.+|||||||+|..+..+++  + +++|+++|+++.+++.+++++      .+++++.+|+.+..  .     +
T Consensus        52 ~l~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~--~-----~  115 (279)
T 3ccf_A           52 LLNPQPGEFILDLGCGTGQLTEKIAQ--S-GAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFR--V-----D  115 (279)
T ss_dssp             HHCCCTTCEEEEETCTTSHHHHHHHH--T-TCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCC--C-----S
T ss_pred             HhCCCCCCEEEEecCCCCHHHHHHHh--C-CCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCC--c-----C
Confidence            34455778999999999999999998  3 689999999999999998765      35889999987532  1     4


Q ss_pred             CcEEEEEEeCCc---cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          194 SSYDFAFVDAEK---RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       194 ~~fDlI~id~~~---~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ++||+|++....   .+...+++++.++|+|||.+++...
T Consensus       116 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          116 KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence            789999987653   4567899999999999999998654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.39  E-value=6.1e-13  Score=112.19  Aligned_cols=104  Identities=16%  Similarity=0.236  Sum_probs=85.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC----CcEEEEEcChhhHHHHHHhCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS----HKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~----~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      .++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...++.    .+++++.+|+.+.. .     .+
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~-----~~   99 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS-F-----HD   99 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC-S-----CT
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC-C-----CC
Confidence            36779999999999999999986   469999999999999999998876663    35899999986532 1     15


Q ss_pred             CcEEEEEEeCCcc---c---hHHHHHHHHccCCCCcEEEEeCC
Q 023645          194 SSYDFAFVDAEKR---M---YQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       194 ~~fDlI~id~~~~---~---~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ++||+|++.....   +   ...+++.+.++|+|||.+++.+.
T Consensus       100 ~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          100 SSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             TCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            7899999876522   2   33789999999999999999754

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.39  E-value=8.9e-13  Score=120.43  Aligned_cols=105  Identities=13%  Similarity=0.172  Sum_probs=90.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc-EEEEEcChhhHHH-HHHhCCCCCcE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLK-ALILNGEASSY  196 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~-~~~~~~~~~~f  196 (279)
                      ++.+|||++||+|..++.++...+...+|+++|+++.+++.+++|++.+++.++ ++++++|+.+.+. ..     .++|
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-----~~~f  126 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-----GFGF  126 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-----SSCE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-----CCCC
Confidence            467999999999999999998764126899999999999999999999999877 9999999988765 43     4689


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |+|++|+ ......+++.+.++|++||+|++.-
T Consensus       127 D~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          127 DYVDLDP-FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            9999998 3444578999999999999988854

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.39  E-value=1.1e-12  Score=111.33  Aligned_cols=97  Identities=16%  Similarity=0.168  Sum_probs=80.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||+|||+|..+..+++.    .+++++|+++.+++.|+++....+  .+++++++|+.+...       .++||+
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~-------~~~fD~   99 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELEL-------PEPVDA   99 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCC-------SSCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCC-------CCCcCE
Confidence            4579999999999999988875    599999999999999999988766  358999999875421       478999


Q ss_pred             EEEeC-C------ccchHHHHHHHHccCCCCcEEEEe
Q 023645          199 AFVDA-E------KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       199 I~id~-~------~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |++.. .      ......+++.+.++|+|||.++++
T Consensus       100 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A          100 ITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            99865 2      244567899999999999999984

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.39  E-value=7.1e-13  Score=112.55  Aligned_cols=108  Identities=15%  Similarity=0.188  Sum_probs=85.5

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHh
Q 023645          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (279)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~  189 (279)
                      .+..++...++.+|||||||+|..+..+++. + ..+++++|+++.+++.++++...    .+++++++|+.+..  .  
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~--  103 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLH--L--  103 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCC--C--
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhcc--C--
Confidence            3444555557789999999999999999886 2 23999999999999999886642    36999999987632  1  


Q ss_pred             CCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          190 NGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       190 ~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                        .+++||+|++...   ..+...+++.+.++|+|||.+++..
T Consensus       104 --~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          104 --PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             --CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence              1578999998765   3356789999999999999999864

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.39  E-value=4.2e-12  Score=114.77  Aligned_cols=107  Identities=14%  Similarity=0.119  Sum_probs=89.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++..| +.+++++|+ +.+++.|+++++..++.++++++.+|+.+. +       ...+
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-------~~~~  257 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S-------YPEA  257 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-C-------CCCC
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-C-------CCCC
Confidence            45678999999999999999999987 689999999 999999999999988888899999999754 1       1334


Q ss_pred             EEEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          197 DFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       197 DlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      |+|++.....     ....+++.+.+.|+|||.+++.+...+
T Consensus       258 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  299 (359)
T 1x19_A          258 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID  299 (359)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred             CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence            9999876532     256789999999999999987775554

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.39  E-value=2.2e-12  Score=115.87  Aligned_cols=102  Identities=14%  Similarity=0.107  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|.+++. ++  + ..+|+++|+++.+++.|+++++.+++.++++++++|+.+.+         ++||
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---------~~fD  260 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---------VKGN  260 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------CCEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------CCCc
Confidence            4778999999999999999 76  2 57999999999999999999999998778999999998653         5899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      +|++|.+.. ...+++.+.++|+|||++++......
T Consensus       261 ~Vi~dpP~~-~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          261 RVIMNLPKF-AHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             EEEECCTTT-GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             EEEECCcHh-HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence            999987533 23788899999999999998765443

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.39  E-value=3.3e-12  Score=103.42  Aligned_cols=104  Identities=14%  Similarity=0.190  Sum_probs=80.0

Q ss_pred             CCHHHHHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          103 VSPDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~--~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ..++...++.. +..  .++.+|||+|||+|..+..+++.   . +|+++|+++.+++.          .++++++++|+
T Consensus         6 P~~~~~~l~~~-l~~~~~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~----------~~~~~~~~~d~   70 (170)
T 3q87_B            6 PGEDTYTLMDA-LEREGLEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES----------HRGGNLVRADL   70 (170)
T ss_dssp             CCHHHHHHHHH-HHHHTCCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT----------CSSSCEEECST
T ss_pred             cCccHHHHHHH-HHhhcCCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc----------ccCCeEEECCh
Confidence            34555555555 444  56789999999999999999875   3 99999999999876          34689999999


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCcc------------chHHHHHHHHccCCCCcEEEEeC
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~~------------~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .+.++       +++||+|+++.+..            .....++.+.+.| |||.+++-.
T Consensus        71 ~~~~~-------~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           71 LCSIN-------QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             TTTBC-------GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             hhhcc-------cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            76322       47899999987533            2356778888888 999998854

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.39  E-value=8e-13  Score=119.00  Aligned_cols=100  Identities=18%  Similarity=0.230  Sum_probs=84.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ..+.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...++.  ++++.+|+.+..        +++||
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~--------~~~fD  263 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV--------KGRFD  263 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC--------CSCEE
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc--------cCCee
Confidence            3467999999999999999999876 579999999999999999999988875  577889886532        47899


Q ss_pred             EEEEeCCcc--------chHHHHHHHHccCCCCcEEEEe
Q 023645          198 FAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       198 lI~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +|+++...+        ....+++.+.+.|+|||.+++-
T Consensus       264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            999986533        2467899999999999999884

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.39  E-value=8.8e-13  Score=112.81  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=84.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++..  ..+|+++|+++.+++.|++++...   .+++++++|+.+..  .    .+++||
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~--~----~~~~fD  160 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETAT--L----PPNTYD  160 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCC--C----CSSCEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCC--C----CCCCeE
Confidence            457899999999999999998874  358999999999999999987643   46999999987531  1    147899


Q ss_pred             EEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          198 FAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +|++....     .+...+++.+.++|+|||++++.+..
T Consensus       161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  199 (254)
T 1xtp_A          161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            99987652     34577899999999999999997743

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.38  E-value=5.8e-12  Score=111.77  Aligned_cols=126  Identities=17%  Similarity=0.130  Sum_probs=94.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +......++..++...++.+|||+|||+|..|..++..++..++|+++|+++.+++.+++++++.|+. +++++++|+.+
T Consensus        86 ~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~  164 (309)
T 2b9e_A           86 LQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLA  164 (309)
T ss_dssp             ECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGG
T ss_pred             EECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHh
Confidence            34444455556666677889999999999999999998765689999999999999999999999986 49999999976


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCcc---------c------------------hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          183 SLKALILNGEASSYDFAFVDAEKR---------M------------------YQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~---------~------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ..+...   ...+||.|++|++..         +                  ....++.+.++|+ ||.|+...+.+.
T Consensus       165 ~~~~~~---~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~  238 (309)
T 2b9e_A          165 VSPSDP---RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC  238 (309)
T ss_dssp             SCTTCG---GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred             cCcccc---ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence            432110   015799999986520         0                  1234666677786 999988766543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.38  E-value=2.6e-12  Score=112.86  Aligned_cols=108  Identities=15%  Similarity=0.233  Sum_probs=77.1

Q ss_pred             CCCEEEEEcCccCHHHHHHH----HHCCCCCEE--EEEeCChhHHHHHHHHHHHh-CCCCcEE--EEEcChhhHHHHHHh
Q 023645          119 GAQRCIEVGVYTGYSSLAIA----LVLPESGCL--VACERDARSLEVAKKYYERA-GVSHKVK--IKHGLAADSLKALIL  189 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la----~~~~~~~~v--~~iD~s~~~~~~a~~~~~~~-g~~~~v~--~~~gd~~~~l~~~~~  189 (279)
                      ++.+|||||||+|..+..++    ...+ +.+|  +++|+|++|++.|++.+... ++. +++  +..+++.+....+..
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSAEQIAKYKELVAKTSNLE-NVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCHHHHHHHHHHHHTCSSCT-TEEEEEECSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCHHHHHHHHHHHHhccCCC-cceEEEEecchhhhhhhhcc
Confidence            45699999999998776543    3333 4544  99999999999999988753 333 344  456666543322111


Q ss_pred             CCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEe
Q 023645          190 NGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       190 ~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ...+++||+|++...   ..+....++++.++|||||.+++-
T Consensus       130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence            112578999998765   445778999999999999999985

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.38  E-value=2.3e-12  Score=116.32  Aligned_cols=105  Identities=20%  Similarity=0.200  Sum_probs=88.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.|++++...++.++++++.+|+.+.+        ...|
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~  250 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL--------PRKA  250 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SSCE
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC--------CCCc
Confidence            45678999999999999999999886 689999999 9999999999999888878999999987532        2459


Q ss_pred             EEEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCC
Q 023645          197 DFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       197 DlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      |+|++....+     ....+++.+.+.|+|||.+++.+..
T Consensus       251 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            9999876532     2347899999999999999987766

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.37  E-value=5.8e-13  Score=111.72  Aligned_cols=103  Identities=16%  Similarity=0.104  Sum_probs=77.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHH----HHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK----YYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~----~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ..++.+|||||||+|..+..+++..| +++|+++|+++.+++.+.+    +....++. +++++++|+.+. +.     .
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l-~~-----~   96 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERL-PP-----L   96 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTC-CS-----C
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhC-CC-----C
Confidence            45667999999999999999999876 7899999999998875433    33334554 599999999763 21     1


Q ss_pred             CCcEEEEEEeCCc--------cchHHHHHHHHccCCCCcEEEEe
Q 023645          193 ASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       193 ~~~fDlI~id~~~--------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .+. |.|++....        .+...+++.+.++|||||.+++.
T Consensus        97 ~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           97 SGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             CCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             CCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            344 777755431        22367899999999999999984

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.36  E-value=2e-12  Score=121.36  Aligned_cols=101  Identities=13%  Similarity=0.150  Sum_probs=83.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..++.+++. + ..+|+++|+++ +++.|+++++.+++.++++++++|+.+..  +     .++|
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~--~-----~~~f  225 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L-----PEQV  225 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C-----SSCE
T ss_pred             hcCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc--c-----CCCe
Confidence            346789999999999999998874 3 46999999998 99999999999999888999999997631  1     3689


Q ss_pred             EEEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |+|+++..     .+.....+..+.++|+|||++++
T Consensus       226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          226 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            99998754     23445667777899999999985

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.36  E-value=5.1e-12  Score=112.00  Aligned_cols=108  Identities=11%  Similarity=0.064  Sum_probs=83.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC------CCCcEEEEEcChhhHHH--HHHhC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG------VSHKVKIKHGLAADSLK--ALILN  190 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g------~~~~v~~~~gd~~~~l~--~~~~~  190 (279)
                      ++.+|||||||+|..+..+++. + ..+++++|+++.+++.|++++...+      ...+++++++|+.+...  .+.  
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--  109 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-R-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR--  109 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS--
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc--
Confidence            5679999999999999998874 3 5799999999999999999887653      23369999999975410  010  


Q ss_pred             CCCCcEEEEEEeCCc-------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          191 GEASSYDFAFVDAEK-------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       191 ~~~~~fDlI~id~~~-------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ...++||+|++....       .....+++.+.++|+|||++++...
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          110 DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            013589999987653       2245889999999999999998644

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.36  E-value=7.4e-12  Score=113.98  Aligned_cols=117  Identities=22%  Similarity=0.245  Sum_probs=92.3

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .+.+.....+..++ ..++.+|||+|||+|..++.++...+ .++|+|+|+++.+++.|+++++.+|+.++++++++|+.
T Consensus       201 ~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~  278 (373)
T 3tm4_A          201 HLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT  278 (373)
T ss_dssp             CCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG
T ss_pred             CccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence            34566666666666 66788999999999999999998754 46999999999999999999999999778999999998


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCcc-----------chHHHHHHHHccCCCCcEEEE
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +....      .++||+|++|.+..           .+..+++.+.+.| +|+.+++
T Consensus       279 ~~~~~------~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i  328 (373)
T 3tm4_A          279 QLSQY------VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI  328 (373)
T ss_dssp             GGGGT------CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred             hCCcc------cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence            75321      47899999987621           1466778888888 4444444

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.36  E-value=8.6e-13  Score=111.58  Aligned_cols=92  Identities=12%  Similarity=0.084  Sum_probs=76.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC-CCcE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE-ASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~-~~~f  196 (279)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++      ..+++++++|+.+.++.     . +++|
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~-----~~~~~f  112 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPA-----GLGAPF  112 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCT-----TCCCCE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCC-----cCCCCE
Confidence            46789999999999999999987   47999999999999999987      23589999999643321     1 4689


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      |+|++..   +...+++.+.++|||||.++
T Consensus       113 D~v~~~~---~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          113 GLIVSRR---GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EEEEEES---CCSGGGGGHHHHEEEEEEEE
T ss_pred             EEEEeCC---CHHHHHHHHHHHcCCCcEEE
Confidence            9999984   34467888999999999999

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.36  E-value=7e-12  Score=113.95  Aligned_cols=127  Identities=17%  Similarity=0.067  Sum_probs=92.0

Q ss_pred             CCCCCCCCHHHHHHHH-HHHhhc--CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcE
Q 023645           97 RGSQMQVSPDQAQLLA-MLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  173 (279)
Q Consensus        97 ~~~~~~~~~~~~~~l~-~l~~~~--~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v  173 (279)
                      +.++.++++...+.+. .+....  .+.+|||+|||+|.+++.+++.   ..+|+++|+++++++.|+++++.+|+. ++
T Consensus       188 ~~~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v  263 (369)
T 3bt7_A          188 ENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHID-NV  263 (369)
T ss_dssp             TTSCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCC-SE
T ss_pred             CCCeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCC-ce
Confidence            3455666666544433 333322  3578999999999999999875   359999999999999999999999985 69


Q ss_pred             EEEEcChhhHHHHHHhCCC----------CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          174 KIKHGLAADSLKALILNGE----------ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       174 ~~~~gd~~~~l~~~~~~~~----------~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +++.+|+.+.++.+...++          ..+||+|++|++....   .+.+.+.|+++|.|++-.+
T Consensus       264 ~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          264 QIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL---DSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             EEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC---CHHHHHHHTTSSEEEEEES
T ss_pred             EEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcccc---HHHHHHHHhCCCEEEEEEC
Confidence            9999999887765521100          0379999999886532   2344555668888877443

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.35  E-value=3.5e-12  Score=108.75  Aligned_cols=107  Identities=10%  Similarity=0.047  Sum_probs=82.4

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||+|..+..+++..+   +|+++|+++.+++.+++++.    ..+++++++|+.+........ ....|
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~-~~~~~  125 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIH-SEIGD  125 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHH-HHHCS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccc-cccCc
Confidence            34567999999999999999999854   89999999999999998762    236999999997643211000 01359


Q ss_pred             EEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       197 DlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      |+|++...     ..+...+++.+.+.|||||.+++-+..
T Consensus       126 d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          126 ANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             CEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             cEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            99998754     235678999999999999997776554

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.35  E-value=6.7e-13  Score=114.68  Aligned_cols=111  Identities=19%  Similarity=0.108  Sum_probs=85.2

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      .+.....+...+...++.+|||||||+|.++..+++  + +.+|+|+|+++.+++.+++..       +++++++|+.+.
T Consensus        19 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~   88 (261)
T 3ege_A           19 DIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN--Q-GLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL   88 (261)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--T-TCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC
T ss_pred             cHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--C-CCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC
Confidence            344444455555556788999999999999999997  2 689999999999887766533       599999999653


Q ss_pred             HHHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          184 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                       +.     .+++||+|++...   ..+...+++++.+.|| ||.+++.+..
T Consensus        89 -~~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           89 -AL-----PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             -CS-----CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             -CC-----CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence             21     1578999998765   3567889999999999 9977665543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.35  E-value=1.4e-12  Score=110.67  Aligned_cols=101  Identities=10%  Similarity=0.093  Sum_probs=82.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++.    ...+++++++|+.+.. .     .+++||
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~-~-----~~~~fD  118 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLP-F-----ENEQFE  118 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCS-S-----CTTCEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCC-C-----CCCCcc
Confidence            35679999999999999999986   469999999999999998764    2356999999997542 1     157899


Q ss_pred             EEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +|++...   ..+...+++.+.++|+|||++++....
T Consensus       119 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  155 (242)
T 3l8d_A          119 AIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILG  155 (242)
T ss_dssp             EEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcC
Confidence            9998764   345678899999999999999997643

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.35  E-value=5.6e-12  Score=116.61  Aligned_cols=117  Identities=15%  Similarity=0.172  Sum_probs=91.4

Q ss_pred             CCCCCCCHHHHHHH-HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEE
Q 023645           98 GSQMQVSPDQAQLL-AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK  176 (279)
Q Consensus        98 ~~~~~~~~~~~~~l-~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~  176 (279)
                      ..+.+.++...+.+ ..+....++.+|||+|||+|.+++.+++.   ..+|+++|+++++++.|+++++.+++.  ++++
T Consensus       268 ~~F~q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~  342 (425)
T 2jjq_A          268 NSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFE  342 (425)
T ss_dssp             TSCCCSBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEE
T ss_pred             ccccccCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEE
Confidence            45566666655443 33333556789999999999999999986   469999999999999999999998885  9999


Q ss_pred             EcChhhHHHHHHhCCCCCcEEEEEEeCCccchHH-HHHHHHccCCCCcEEEEe
Q 023645          177 HGLAADSLKALILNGEASSYDFAFVDAEKRMYQE-YFELLLQLIRVGGIIVID  228 (279)
Q Consensus       177 ~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~-~l~~~~~~Lk~gG~lv~d  228 (279)
                      .+|+.+.+        ..+||+|++|.+...... .++.+ ..|+|||++++.
T Consensus       343 ~~d~~~~~--------~~~fD~Vv~dPPr~g~~~~~~~~l-~~l~p~givyvs  386 (425)
T 2jjq_A          343 VASDREVS--------VKGFDTVIVDPPRAGLHPRLVKRL-NREKPGVIVYVS  386 (425)
T ss_dssp             ECCTTTCC--------CTTCSEEEECCCTTCSCHHHHHHH-HHHCCSEEEEEE
T ss_pred             ECChHHcC--------ccCCCEEEEcCCccchHHHHHHHH-HhcCCCcEEEEE
Confidence            99998653        238999999988554433 55555 458999999985

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.35  E-value=2.5e-12  Score=117.06  Aligned_cols=102  Identities=12%  Similarity=0.082  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHH-HHhCCCCCcEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA-LILNGEASSYD  197 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~-~~~~~~~~~fD  197 (279)
                      ++++|||+| |+|..+..++...+ ..+|+++|+++.+++.|+++++..|+. +++++++|+.+.++. .     +++||
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~-----~~~fD  243 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYA-----LHKFD  243 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTT-----SSCBS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhc-----cCCcc
Confidence            578999999 99999999988754 579999999999999999999999987 699999999763331 1     35899


Q ss_pred             EEEEeCCc--cchHHHHHHHHccCCCCc-EEEEe
Q 023645          198 FAFVDAEK--RMYQEYFELLLQLIRVGG-IIVID  228 (279)
Q Consensus       198 lI~id~~~--~~~~~~l~~~~~~Lk~gG-~lv~d  228 (279)
                      +|++|.+.  .....+++.+.+.|+||| ++++.
T Consensus       244 ~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          244 TFITDPPETLEAIRAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred             EEEECCCCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence            99999763  235678899999999999 44553

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.35  E-value=3.7e-12  Score=107.82  Aligned_cols=99  Identities=13%  Similarity=0.103  Sum_probs=80.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..+..+++..+   +++++|+++.+++.|++++      .+++++++|+.+...       .++||
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-------~~~~D  102 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL-------GRKFS  102 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC-------SSCEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc-------CCCCc
Confidence            4567999999999999999998753   9999999999999998864      248999999875321       46899


Q ss_pred             EEEEeCC-------ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          198 FAFVDAE-------KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       198 lI~id~~-------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      +|++...       ......+++.+.++|+|||.++++....
T Consensus       103 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A          103 AVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             EEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             EEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            9996432       1445788999999999999999986544

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.34  E-value=5.6e-13  Score=114.68  Aligned_cols=110  Identities=14%  Similarity=0.118  Sum_probs=83.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC----------------------------
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----------------------------  169 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----------------------------  169 (279)
                      .++.+|||||||+|..+..++....  .+|+++|+++.+++.+++++...+.                            
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            4567999999999999998887532  4899999999999999988764321                            


Q ss_pred             CCcE-EEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEeCCC
Q 023645          170 SHKV-KIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       170 ~~~v-~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ..++ +++++|+.+..+..  ....++||+|++.....       ....+++.+.++|+|||++++.+..
T Consensus       133 ~~~v~~~~~~d~~~~~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLG--GVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTT--TCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhhheeEEEeeeccCCCCC--ccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            1127 89999987643211  00127899999876533       5678899999999999999997744

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.34  E-value=2.7e-12  Score=102.95  Aligned_cols=102  Identities=19%  Similarity=0.215  Sum_probs=75.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH--HHHHhCCCCC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEAS  194 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~~~~~~~~~  194 (279)
                      ..++.+|||+|||+|..+..+++.++++.+++++|+++ +.+.           .+++++++|+.+..  ..+.....++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCC
Confidence            34677999999999999999999864468999999999 6432           45899999997642  0010000147


Q ss_pred             cEEEEEEeCCcc---ch-----------HHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAEKR---MY-----------QEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~~~---~~-----------~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +||+|+++....   ..           ..+++.+.++|+|||.+++...
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            899999976522   11           5788999999999999998543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.34  E-value=1.6e-12  Score=108.20  Aligned_cols=97  Identities=18%  Similarity=0.197  Sum_probs=78.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||||||+|..+..+    + ..+++++|+++.+++.++++.      .+++++++|+.+..  .    .+++||+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~--~----~~~~fD~   98 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALP--F----PGESFDV   98 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCC--S----CSSCEEE
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCC--C----CCCcEEE
Confidence            5679999999999988776    2 239999999999999998876      35889999986531  1    1568999


Q ss_pred             EEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       199 I~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      |++...   ..+....++.+.++|||||.+++.....
T Consensus        99 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A           99 VLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             EEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            998765   3456789999999999999999976543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.34  E-value=2.4e-12  Score=111.50  Aligned_cols=105  Identities=15%  Similarity=0.079  Sum_probs=76.4

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh-HHHHHHh
Q 023645          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD-SLKALIL  189 (279)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~-~l~~~~~  189 (279)
                      +...+...++.+|||||||+|..+..+++.   +++|+++|+|+.+++.|++++...    .+.....+... .....  
T Consensus        37 il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~~~~--  107 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIPKEL--  107 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCCGGG--
T ss_pred             HHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc----cceeeeeeccccccccc--
Confidence            333445567789999999999999999986   469999999999999999987643    12222222211 00111  


Q ss_pred             CCCCCcEEEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEe
Q 023645          190 NGEASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       190 ~~~~~~fDlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                         .++||+|+++...     ......+..+.++| |||.+++.
T Consensus       108 ---~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          108 ---AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             ---TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             ---CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence               4789999998653     34556888999999 99999985

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.33  E-value=2.8e-11  Score=100.40  Aligned_cols=111  Identities=15%  Similarity=0.141  Sum_probs=85.1

Q ss_pred             CCHHHHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          103 VSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       103 ~~~~~~~~l~~l~~---~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      .++.....+...+.   ..++.+|||+|||+|..+..+++..  ..+|+++|+++.+++.++++++..++  +++++++|
T Consensus        30 ~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d  105 (207)
T 1wy7_A           30 TPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGD  105 (207)
T ss_dssp             CCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESC
T ss_pred             CchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECc
Confidence            44544444444433   3357899999999999999998862  35899999999999999999988877  59999999


Q ss_pred             hhhHHHHHHhCCCCCcEEEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEe
Q 023645          180 AADSLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       180 ~~~~l~~~~~~~~~~~fDlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +.+.         .++||+|+++.+.     .....+++.+.+.+  |+++++.
T Consensus       106 ~~~~---------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          106 VSEF---------NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             GGGC---------CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             hHHc---------CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            9763         3589999999762     23457888888888  6665543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.32  E-value=1.1e-11  Score=108.60  Aligned_cols=108  Identities=14%  Similarity=0.154  Sum_probs=75.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeC-ChhHHHHHHHHH-----HHhCCC----CcEEEEEcChhhHHHHH
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER-DARSLEVAKKYY-----ERAGVS----HKVKIKHGLAADSLKAL  187 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~-s~~~~~~a~~~~-----~~~g~~----~~v~~~~gd~~~~l~~~  187 (279)
                      .++++|||||||+|..++.+++. + ..+|+++|+ ++.+++.|+++.     +..++.    ++++++..+..+....+
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            46779999999999999988875 2 359999999 899999999999     555554    46888855533211111


Q ss_pred             HhCCCCCcEEEEEE-eCC--ccchHHHHHHHHccCC---C--CcEEEE
Q 023645          188 ILNGEASSYDFAFV-DAE--KRMYQEYFELLLQLIR---V--GGIIVI  227 (279)
Q Consensus       188 ~~~~~~~~fDlI~i-d~~--~~~~~~~l~~~~~~Lk---~--gG~lv~  227 (279)
                      ......++||+|++ |..  ......+++.+.++|+   |  ||.+++
T Consensus       156 ~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          156 QRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             HHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             HhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            10001478999987 432  4457789999999999   9  997665

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.31  E-value=8e-12  Score=101.96  Aligned_cols=106  Identities=11%  Similarity=0.123  Sum_probs=83.0

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      ..++..+  ..++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++.      +++++++|+.+..  +
T Consensus        37 ~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~  103 (195)
T 3cgg_A           37 ARLIDAM--APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQ--I  103 (195)
T ss_dssp             HHHHHHH--SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSC--C
T ss_pred             HHHHHHh--ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCC--C
Confidence            3444444  346779999999999999999986   4699999999999999988753      4889999987531  1


Q ss_pred             HhCCCCCcEEEEEEeC-Cc-----cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          188 ILNGEASSYDFAFVDA-EK-----RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~-~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                          ..++||+|++.. ..     .....+++.+.++|+|||.+++...
T Consensus       104 ----~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~  148 (195)
T 3cgg_A          104 ----SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFG  148 (195)
T ss_dssp             ----CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence                147899999973 22     3347789999999999999998643

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=99.31  E-value=1.2e-11  Score=106.31  Aligned_cols=148  Identities=13%  Similarity=0.169  Sum_probs=104.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHH------CCCCCEEEEEeC-----Chh-------------------HHHHHHHHH----
Q 023645          119 GAQRCIEVGVYTGYSSLAIALV------LPESGCLVACER-----DAR-------------------SLEVAKKYY----  164 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~------~~~~~~v~~iD~-----s~~-------------------~~~~a~~~~----  164 (279)
                      -+..|+|+||..|.++..++..      .....+|+++|.     .+.                   ..+..++.+    
T Consensus        69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            4669999999999999997753      123568999993     211                   111122222    


Q ss_pred             --HHhCC-CCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCc-cchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcc
Q 023645          165 --ERAGV-SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQM  240 (279)
Q Consensus       165 --~~~g~-~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~-~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~  240 (279)
                        +..+. .++++++.|++.+.++.+..+....+||+|++|++. ..+..+++.+++.|+|||+|++||+.+++-     
T Consensus       149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w-----  223 (257)
T 3tos_A          149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPKW-----  223 (257)
T ss_dssp             TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTTC-----
T ss_pred             hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCCC-----
Confidence              23454 478999999999999887655435689999999985 556778999999999999999999853221     


Q ss_pred             cCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEE
Q 023645          241 VNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQ  277 (279)
Q Consensus       241 ~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~  277 (279)
                       . ..+.|+.+|    ..+.++....+|++.+...++
T Consensus       224 -~-G~~~A~~ef----~~~~~~~i~~~p~~~~~~y~~  254 (257)
T 3tos_A          224 -P-GENIAMRKV----LGLDHAPLRLLPGRPAPAYLR  254 (257)
T ss_dssp             -T-HHHHHHHHH----TCTTSSCCEECTTCSCCEEEE
T ss_pred             -h-HHHHHHHHH----HhhCCCeEEEccCCCCCEEEE
Confidence             1 223444444    467788888999988876553

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.30  E-value=2e-12  Score=107.44  Aligned_cols=102  Identities=9%  Similarity=0.091  Sum_probs=81.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..+..+++..+  .+++++|+++.+++.++++...   ..+++++++|+.+. + +    .+++||
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~-~-~----~~~~fD  109 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL-D-F----PSASFD  109 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC-C-S----CSSCEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC-C-C----CCCccc
Confidence            4567999999999999999998643  3899999999999999998763   24689999998754 1 1    147899


Q ss_pred             EEEEeCCc------------------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          198 FAFVDAEK------------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       198 lI~id~~~------------------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +|++....                  .....+++.+.++|+|||.+++.+.
T Consensus       110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          110 VVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             EEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            99986431                  2346789999999999999998654

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.29  E-value=7.3e-12  Score=108.00  Aligned_cols=95  Identities=16%  Similarity=0.180  Sum_probs=77.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||||||+|..+..+++.   +.+++++|+++.+++.++++..     .  .++++|+.+..  .    .+++||+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~--~----~~~~fD~  117 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLP--F----PSGAFEA  117 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCC--S----CTTCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCC--C----CCCCEEE
Confidence            6789999999999999999875   4699999999999999988653     1  27888886531  1    1578999


Q ss_pred             EEEeCC----ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          199 AFVDAE----KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       199 I~id~~----~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |++...    ..+...+++.+.++|+|||.+++..
T Consensus       118 v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          118 VLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             EEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEe
Confidence            998653    2447789999999999999999864

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.29  E-value=1.6e-11  Score=106.57  Aligned_cols=166  Identities=12%  Similarity=0.059  Sum_probs=102.5

Q ss_pred             CCCChhHHHHHHhccCChHHHHHHHHHH-HccCCCCCCCCHHHHHHHHH----HHhhcCCCEEEEEcCcc--CHHHHHHH
Q 023645           66 ISVTPPLYDYILRNVREPEILRQLREET-AGMRGSQMQVSPDQAQLLAM----LVQILGAQRCIEVGVYT--GYSSLAIA  138 (279)
Q Consensus        66 ~~~~~~l~~Y~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~----l~~~~~~~~VLEiG~G~--G~~t~~la  138 (279)
                      .....++++|+..--...++=+++-+.. ...|.. ..+......++..    +.......+|||||||+  +..+..++
T Consensus        21 ~p~~aR~yd~~LgGk~n~~~Dr~~~~~~~~~~P~~-~~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la   99 (277)
T 3giw_A           21 SAHSARIYDYIIGGKDYYPADKEAGDAMSREWPAL-PVHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIA   99 (277)
T ss_dssp             SCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHH
T ss_pred             CCCcchhheeecCCccCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHH
Confidence            3455689999997654444333333333 223321 1112222233333    33334557999999997  44556666


Q ss_pred             HHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE-----EEEEeCCcc---c---
Q 023645          139 LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD-----FAFVDAEKR---M---  207 (279)
Q Consensus       139 ~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD-----lI~id~~~~---~---  207 (279)
                      +...++++|+++|.|+.|++.|++.+...+ ..+++++++|+.+....+......+.||     .|+++...+   +   
T Consensus       100 ~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~  178 (277)
T 3giw_A          100 QSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDD  178 (277)
T ss_dssp             HHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGC
T ss_pred             HHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhh
Confidence            544337899999999999999999886433 2469999999976522110000013344     466665421   1   


Q ss_pred             hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          208 YQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       208 ~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ....+..+.+.|+|||+|++.....+
T Consensus       179 p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          179 AVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             HHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             HHHHHHHHHHhCCCCcEEEEEeccCC
Confidence            45789999999999999999876544

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.29  E-value=1.1e-12  Score=113.64  Aligned_cols=110  Identities=15%  Similarity=0.077  Sum_probs=78.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC----------------------------
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----------------------------  169 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----------------------------  169 (279)
                      .++.+|||||||+|..+..++...  ..+|+++|+|+.+++.|+++++....                            
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            356799999999998776655431  13799999999999999987754210                            


Q ss_pred             CCcEE-EEEcChhhHHHHHHhCCCCCcEEEEEEeCC-------ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          170 SHKVK-IKHGLAADSLKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       170 ~~~v~-~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-------~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ..++. ++++|+.+..+.  .....++||+|++...       ..++...++.+.++|||||.+++.+..
T Consensus       132 ~~~i~~~~~~D~~~~~~~--~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPL--APAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHHEEEEEECCTTSSSTT--TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             HhhhheEEeccccCCCCC--CccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            11244 888888753210  0001468999998643       244567899999999999999998654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.27  E-value=1e-10  Score=105.57  Aligned_cols=107  Identities=11%  Similarity=0.090  Sum_probs=85.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..+..+|||||||+|..+..+++..| +.+++..|. |++++.|+++++..+ .++|+++.+|+.+..        ...+
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~--------~~~~  245 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDP--------LPEA  245 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSC--------CCCC
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCC--------CCCc
Confidence            44567999999999999999999998 789999998 889999998876544 578999999987531        3467


Q ss_pred             EEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          197 DFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       197 DlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      |++++....     +.....++++.+.|+|||.+++.+.+.+.
T Consensus       246 D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~  288 (353)
T 4a6d_A          246 DLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE  288 (353)
T ss_dssp             SEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCT
T ss_pred             eEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCC
Confidence            999886542     23456799999999999988887766543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.27  E-value=7.4e-12  Score=109.63  Aligned_cols=110  Identities=10%  Similarity=0.024  Sum_probs=76.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-----------------CCC-----------
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-----------------GVS-----------  170 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-----------------g~~-----------  170 (279)
                      ++.+|||||||+|..+..++.. + ..+|+|+|+|+.+++.|+++++..                 +..           
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACS-H-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGG-G-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhcc-C-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            6789999999999955444432 2 469999999999999998865421                 110           


Q ss_pred             -CcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCc-------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          171 -HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       171 -~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~-------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                       ..++++.+|+.+.++.-.....+++||+|++....       .+....++.+.++|||||.|++.+.
T Consensus       149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~  216 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  216 (289)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence             01567777876522210000113569999987652       2467889999999999999999753

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.27  E-value=4e-11  Score=99.09  Aligned_cols=107  Identities=15%  Similarity=0.188  Sum_probs=79.5

Q ss_pred             CCHHHHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          103 VSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       103 ~~~~~~~~l~~l~~---~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      ........+...+.   ..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++.      +++++++|
T Consensus        32 ~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d  103 (200)
T 1ne2_A           32 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG------GVNFMVAD  103 (200)
T ss_dssp             CCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT------TSEEEECC
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC------CCEEEECc
Confidence            34444444434333   236779999999999999999886 3 3589999999999999999875      58999999


Q ss_pred             hhhHHHHHHhCCCCCcEEEEEEeCCcc-----chHHHHHHHHccCCCCcEEEEe
Q 023645          180 AADSLKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       180 ~~~~l~~~~~~~~~~~fDlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +.+.         .++||+|+++.+..     ....+++.+.+.+  |+++++.
T Consensus       104 ~~~~---------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          104 VSEI---------SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             GGGC---------CCCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEE
T ss_pred             HHHC---------CCCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEE
Confidence            9763         36899999997622     2346788888887  6665554

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.26  E-value=2.3e-11  Score=100.36  Aligned_cols=99  Identities=14%  Similarity=0.170  Sum_probs=71.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH------------
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL------------  184 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l------------  184 (279)
                      .++.+|||+|||+|.++..+++..++ +++|+++|+++..           .. .+++++++|+.+..            
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhcccccccc
Confidence            45679999999999999999998863 5899999999842           12 35899999986532            


Q ss_pred             -------HHHHhCCCCCcEEEEEEeCCccc-------h-------HHHHHHHHccCCCCcEEEEe
Q 023645          185 -------KALILNGEASSYDFAFVDAEKRM-------Y-------QEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       185 -------~~~~~~~~~~~fDlI~id~~~~~-------~-------~~~l~~~~~~Lk~gG~lv~d  228 (279)
                             ..+.....+++||+|+++.....       .       ...++.+.++|+|||.+++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~  153 (201)
T 2plw_A           89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK  153 (201)
T ss_dssp             ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence                   00000001468999999864221       1       13677889999999999984

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.26  E-value=2.8e-11  Score=106.20  Aligned_cols=100  Identities=17%  Similarity=0.180  Sum_probs=78.2

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      ..++.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...+..++++++++|+.
T Consensus        11 l~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~   87 (285)
T 1zq9_A           11 LKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL   87 (285)
T ss_dssp             ECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEccee
Confidence            345555555555555667789999999999999999987   35999999999999999999877666567999999997


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccchHHHH
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYF  212 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l  212 (279)
                      +..        ..+||+|+++.+.......+
T Consensus        88 ~~~--------~~~fD~vv~nlpy~~~~~~~  110 (285)
T 1zq9_A           88 KTD--------LPFFDTCVANLPYQISSPFV  110 (285)
T ss_dssp             TSC--------CCCCSEEEEECCGGGHHHHH
T ss_pred             ccc--------chhhcEEEEecCcccchHHH
Confidence            541        24799999987755443333

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.25  E-value=1.7e-11  Score=105.92  Aligned_cols=95  Identities=19%  Similarity=0.204  Sum_probs=77.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++.++ +.+|+++|+++.+++.|+++.      .++.+..+|+.+. + .    .+++||
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~----~~~~fD  150 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P-F----SDTSMD  150 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S-B----CTTCEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhC-C-C----CCCcee
Confidence            4677999999999999999999875 679999999999999998764      2478999998643 1 1    147899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +|++....    ..++.+.++|+|||.+++..
T Consensus       151 ~v~~~~~~----~~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          151 AIIRIYAP----CKAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             EEEEESCC----CCHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeCCh----hhHHHHHHhcCCCcEEEEEE
Confidence            99986553    34788999999999998854

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.25  E-value=3.9e-11  Score=111.31  Aligned_cols=122  Identities=13%  Similarity=0.205  Sum_probs=90.9

Q ss_pred             CCCCCHH-HHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEE
Q 023645          100 QMQVSPD-QAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (279)
Q Consensus       100 ~~~~~~~-~~~~l~~l~~---~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~  175 (279)
                      +.+.++. ...++..+..   ..++.+|||+|||+|.+++.+++.   ..+|+++|+++++++.|+++++.+++. ++++
T Consensus       263 f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f  338 (433)
T 1uwv_A          263 FIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTF  338 (433)
T ss_dssp             CCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEE
T ss_pred             ccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEE
Confidence            3444444 3334444433   345679999999999999999986   479999999999999999999998886 6999


Q ss_pred             EEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          176 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       176 ~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +++|+.+.++.+..  .+++||+|++|.+.....+.++.+.+ ++|++++++.
T Consensus       339 ~~~d~~~~l~~~~~--~~~~fD~Vv~dPPr~g~~~~~~~l~~-~~p~~ivyvs  388 (433)
T 1uwv_A          339 YHENLEEDVTKQPW--AKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVS  388 (433)
T ss_dssp             EECCTTSCCSSSGG--GTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEE
T ss_pred             EECCHHHHhhhhhh--hcCCCCEEEECCCCccHHHHHHHHHh-cCCCeEEEEE
Confidence            99999874332100  14689999999987666666665543 7898888774

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.25  E-value=3.2e-11  Score=108.45  Aligned_cols=118  Identities=12%  Similarity=0.038  Sum_probs=91.7

Q ss_pred             CCCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCCCC----CEEEEEeCChhHHHHHHHHHHHhCCCCcE
Q 023645          102 QVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPES----GCLVACERDARSLEVAKKYYERAGVSHKV  173 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~t~~la~~~~~~----~~v~~iD~s~~~~~~a~~~~~~~g~~~~v  173 (279)
                      .++.....++..++.    ..++.+|||+|||+|..+..+++.++..    .+++|+|+++.+++.|+.++...|+  ++
T Consensus       109 ~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~  186 (344)
T 2f8l_A          109 MTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KM  186 (344)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CC
T ss_pred             CChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--Cc
Confidence            355566666555543    2345799999999999999999887532    7899999999999999999998887  48


Q ss_pred             EEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccc---------------------hHHHHHHHHccCCCCcEEEEe
Q 023645          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRM---------------------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       174 ~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~---------------------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .++++|+.+...       .++||+|+.+++...                     ...+++.+.+.|+|||.+++-
T Consensus       187 ~i~~~D~l~~~~-------~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v  255 (344)
T 2f8l_A          187 TLLHQDGLANLL-------VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  255 (344)
T ss_dssp             EEEESCTTSCCC-------CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eEEECCCCCccc-------cCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence            999999875321       478999999977211                     125789999999999988773

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.23  E-value=2e-11  Score=106.41  Aligned_cols=105  Identities=17%  Similarity=0.220  Sum_probs=77.0

Q ss_pred             CCCEEEEEcCccCH----HHHHHHHHCCC---CCEEEEEeCChhHHHHHHHHHH--------------H---------hC
Q 023645          119 GAQRCIEVGVYTGY----SSLAIALVLPE---SGCLVACERDARSLEVAKKYYE--------------R---------AG  168 (279)
Q Consensus       119 ~~~~VLEiG~G~G~----~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~--------------~---------~g  168 (279)
                      ++.+|+|+|||+|.    .++.+++.++.   +.+|+|+|+|+++++.|+++.-              +         .|
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45699999999998    55666666442   3599999999999999998641              0         00


Q ss_pred             -------CCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEe
Q 023645          169 -------VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       169 -------~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                             +.++|+|.++|..+. + +.   ..++||+|++....     ......++.+.+.|+|||+|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~-~-~~---~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEK-Q-YN---VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS-S-CC---CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCC-C-CC---cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                   113699999998752 1 10   03689999996542     23467899999999999999984

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.23  E-value=1.2e-11  Score=113.89  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=75.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++.    +......+...+..+.++..     +++||
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~-----~~~fD  173 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT-----EGPAN  173 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH-----HCCEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC-----CCCEE
Confidence            45779999999999999999975   46999999999999998875    33322222222222233322     48999


Q ss_pred             EEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       198 lI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +|++...   ..+...+++.+.++|||||++++...
T Consensus       174 ~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          174 VIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             EEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9998865   34577899999999999999999743

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.23  E-value=3.9e-11  Score=99.10  Aligned_cols=96  Identities=14%  Similarity=0.191  Sum_probs=69.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HH---HHHhCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK---ALILNGE  192 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~---~~~~~~~  192 (279)
                      .++.+|||+|||+|.++..+++.   +++|+++|+++..           .. .+++++++|+.+.  ..   .......
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~   88 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREEG   88 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhccc
Confidence            45789999999999999999986   5899999999852           12 3599999998652  11   1110000


Q ss_pred             CCcEEEEEEeCCcc--------------chHHHHHHHHccCCCCcEEEEe
Q 023645          193 ASSYDFAFVDAEKR--------------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       193 ~~~fDlI~id~~~~--------------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .++||+|++|....              .....++.+.++|||||.+++.
T Consensus        89 ~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k  138 (191)
T 3dou_A           89 IEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK  138 (191)
T ss_dssp             CSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            14899999986421              1235677788999999999975

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.21  E-value=2.2e-11  Score=102.25  Aligned_cols=98  Identities=23%  Similarity=0.361  Sum_probs=77.8

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .+....++.+|||||||+|..+..++..       +++|+++.+++.++++        +++++.+|+.+. + .    .
T Consensus        41 ~l~~~~~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~----~   99 (219)
T 1vlm_A           41 AVKCLLPEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLKGTAENL-P-L----K   99 (219)
T ss_dssp             HHHHHCCSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-S----C
T ss_pred             HHHHhCCCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEEcccccC-C-C----C
Confidence            3444455789999999999999877642       9999999999998876        478999998653 1 1    1


Q ss_pred             CCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          193 ASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       193 ~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +++||+|++...   ..+...+++.+.++|+|||.+++....
T Consensus       100 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A          100 DESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence            468999998865   345678999999999999999997654

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.20  E-value=1.7e-11  Score=110.40  Aligned_cols=106  Identities=12%  Similarity=0.069  Sum_probs=82.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +..+.  ++..+..+..++++++.+|+.+.   +     . +|
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~---~-----p-~~  248 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE---V-----P-HA  248 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC---C-----C-CC
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCC-CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC---C-----C-CC
Confidence            34567999999999999999999987 689999999 44444  44444456667899999999632   1     3 89


Q ss_pred             EEEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          197 DFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       197 DlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      |+|++....+     .....++++.+.|||||.|++.+...+..
T Consensus       249 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~  292 (348)
T 3lst_A          249 DVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEG  292 (348)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSS
T ss_pred             cEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence            9999875422     23578999999999999999988766543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.19  E-value=1.6e-11  Score=102.88  Aligned_cols=98  Identities=15%  Similarity=0.075  Sum_probs=77.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|..+..+++. +  .+++++|+++.+++.++++.        .+++.+|+.+.....    .+++||
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~----~~~~fD   95 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPY----EEEQFD   95 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCS----CTTCEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCC----CCCccC
Confidence            46779999999999999999986 3  79999999999998887643        267888886421111    147899


Q ss_pred             EEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       198 lI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +|++...   ..+...+++.+.++|+|||.+++...
T Consensus        96 ~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A           96 CVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             EEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred             EEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            9998765   23457889999999999999999653

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.19  E-value=4.8e-11  Score=102.24  Aligned_cols=145  Identities=9%  Similarity=0.031  Sum_probs=100.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|-+++.++...+ ..+|+++|+++.+++.+++++..+|+.  .++.+.|.....+       .++||
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p-------~~~~D  200 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRL-------DEPAD  200 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCC-------CSCCS
T ss_pred             CCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCC-------CCCcc
Confidence            4588999999999999999887655 789999999999999999999998886  6888888865433       68999


Q ss_pred             EEEEeCCccc-----hHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCc
Q 023645          198 FAFVDAEKRM-----YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDG  272 (279)
Q Consensus       198 lI~id~~~~~-----~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (279)
                      ++++.-..+.     ....+ .+...|+++|++|--+.-.-|.   ...  .-..-..+.++....+.++....+-+++-
T Consensus       201 vaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~G---rs~--gm~~~Y~~~~e~~~~~~g~~~~~~~~~nE  274 (281)
T 3lcv_B          201 VTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQ---RSK--GMFQNYSQSFESQARERSCRIQRLEIGNE  274 (281)
T ss_dssp             EEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC------------CHHHHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcC---CCc--chhhHHHHHHHHHHHhcCCceeeeeecCe
Confidence            9998654222     12345 7889999999999876622111   110  01111223333333334446667777777


Q ss_pred             eEEEEE
Q 023645          273 MTICQK  278 (279)
Q Consensus       273 ~~i~~~  278 (279)
                      +..+.+
T Consensus       275 l~y~i~  280 (281)
T 3lcv_B          275 LIYVIQ  280 (281)
T ss_dssp             EEEEEC
T ss_pred             eEEEec
Confidence            665544

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.18  E-value=7.3e-12  Score=109.89  Aligned_cols=97  Identities=14%  Similarity=0.085  Sum_probs=71.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEE-EcChhhHHH-HHHhCCCCCcE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK-HGLAADSLK-ALILNGEASSY  196 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~-~gd~~~~l~-~~~~~~~~~~f  196 (279)
                      ++.+|||||||||.++..+++. + .++|+++|+++.|++.+.+.      ..++... ..++..... .+    ...+|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~l~~~~l----~~~~f  152 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN-G-AKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRYAEPVDF----TEGLP  152 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGGCCGGGC----TTCCC
T ss_pred             cccEEEecCCCccHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHh------CcccceecccCceecchhhC----CCCCC
Confidence            4679999999999999998876 2 46999999999999875432      1234333 233322111 11    12359


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |+|++|.........+..+.++|+|||.+++
T Consensus       153 D~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~  183 (291)
T 3hp7_A          153 SFASIDVSFISLNLILPALAKILVDGGQVVA  183 (291)
T ss_dssp             SEEEECCSSSCGGGTHHHHHHHSCTTCEEEE
T ss_pred             CEEEEEeeHhhHHHHHHHHHHHcCcCCEEEE
Confidence            9999998877788899999999999999887

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.18  E-value=4.6e-11  Score=103.22  Aligned_cols=108  Identities=18%  Similarity=0.139  Sum_probs=79.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHH-------CCC----CCEEEEEeCCh--------------hHHHHHHHHHHHh------
Q 023645          119 GAQRCIEVGVYTGYSSLAIALV-------LPE----SGCLVACERDA--------------RSLEVAKKYYERA------  167 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~-------~~~----~~~v~~iD~s~--------------~~~~~a~~~~~~~------  167 (279)
                      ++.+|||||+|+|++++.+++.       .|.    ..+++++|..|              +..+.|++.++..      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4569999999999999998765       342    25899999987              3444677776641      


Q ss_pred             ----CCC---CcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCc-----c-chHHHHHHHHccCCCCcEEEE
Q 023645          168 ----GVS---HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----R-MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       168 ----g~~---~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~-----~-~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                          .+.   .+++++.||+.+.++.+.... ...||+||+|+..     + .+.++|+.+.++|+|||+|+.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~-~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSL-NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGG-TTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhccccc-CCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                121   357899999998777551100 1379999999742     1 367899999999999999996

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.18  E-value=7.9e-11  Score=104.00  Aligned_cols=97  Identities=14%  Similarity=0.231  Sum_probs=73.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .+++.....+...+...++.+|||||||+|..+..+++.   +++|+++|+++.+++.++++++..+. ++++++++|+.
T Consensus        25 l~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~  100 (299)
T 2h1r_A           25 LKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAI  100 (299)
T ss_dssp             ECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CC
T ss_pred             ecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchh
Confidence            445555555555566667789999999999999999875   46999999999999999999987776 46999999987


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccchHH
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRMYQE  210 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~  210 (279)
                      +..        ..+||+|+++.+......
T Consensus       101 ~~~--------~~~~D~Vv~n~py~~~~~  121 (299)
T 2h1r_A          101 KTV--------FPKFDVCTANIPYKISSP  121 (299)
T ss_dssp             SSC--------CCCCSEEEEECCGGGHHH
T ss_pred             hCC--------cccCCEEEEcCCcccccH
Confidence            541        358999999987554433

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.18  E-value=1.1e-10  Score=95.85  Aligned_cols=100  Identities=10%  Similarity=0.084  Sum_probs=72.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCC--------CEEEEEeCChhHHHHHHHHHHHhCCCCcEEEE-EcChhhHHH--H
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPES--------GCLVACERDARSLEVAKKYYERAGVSHKVKIK-HGLAADSLK--A  186 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~--------~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~-~gd~~~~l~--~  186 (279)
                      .++.+|||+|||+|.++..+++.++..        ++|+++|+++..           .. .+++++ .+|+.+...  .
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHH
Confidence            457799999999999999999987633        799999999842           12 358888 888764321  1


Q ss_pred             HHhCCCCCcEEEEEEeCCcc-------ch-------HHHHHHHHccCCCCcEEEEeC
Q 023645          187 LILNGEASSYDFAFVDAEKR-------MY-------QEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       187 ~~~~~~~~~fDlI~id~~~~-------~~-------~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +.....+++||+|+++....       +.       ...++.+.++|+|||.+++..
T Consensus        89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            11101135899999875311       11       367888999999999999864

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.17  E-value=7.8e-12  Score=106.54  Aligned_cols=98  Identities=13%  Similarity=0.183  Sum_probs=67.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHH-HHHHhCCCCCc
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSL-KALILNGEASS  195 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l-~~~~~~~~~~~  195 (279)
                      ..+++|||||||+|..+..+++. + ..+|+|+|+++++++.++++..      ++..... ++.... ..+    +...
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~~~----~~~~  103 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLADF----EQGR  103 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGGGC----CSCC
T ss_pred             CCCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHhHc----CcCC
Confidence            34679999999999999999986 2 2599999999999998766432      2222211 221110 011    0123


Q ss_pred             EEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ||.+.+|........++..+.++|||||.+++
T Consensus       104 ~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~  135 (232)
T 3opn_A          104 PSFTSIDVSFISLDLILPPLYEILEKNGEVAA  135 (232)
T ss_dssp             CSEEEECCSSSCGGGTHHHHHHHSCTTCEEEE
T ss_pred             CCEEEEEEEhhhHHHHHHHHHHhccCCCEEEE
Confidence            56666666555557889999999999999988

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.16  E-value=1.6e-10  Score=101.22  Aligned_cols=106  Identities=15%  Similarity=0.206  Sum_probs=87.4

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--C--CCCcEEEEEcChhhHHHHHHhCCC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--G--VSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g--~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ...+++||-||.|.|..+..+++..+ ..+|+.+|+++..++.+++.+...  +  -..|++++.+|+..++...     
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~-----  154 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT-----  154 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS-----
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc-----
Confidence            35688999999999999999987644 579999999999999999988642  2  1468999999999877543     


Q ss_pred             CCcEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 023645          193 ASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       193 ~~~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .++||+|++|....       ...++++.+.+.|+|||+++..
T Consensus       155 ~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          155 SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             SCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             cccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence            57899999996411       2457899999999999999985

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.15  E-value=9.4e-11  Score=106.41  Aligned_cols=99  Identities=15%  Similarity=0.127  Sum_probs=79.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      +..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++       ..+++++.+|+.+.+        ... |+
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~--------p~~-D~  264 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYP-SINAINFDL-PHVIQDAPA-------FSGVEHLGGDMFDGV--------PKG-DA  264 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTTCC--------CCC-SE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeh-HHHHHhhhh-------cCCCEEEecCCCCCC--------CCC-CE
Confidence            467999999999999999999987 789999999 888766653       246999999997522        223 99


Q ss_pred             EEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          199 AFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       199 I~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      |++....+     .....++++.+.|+|||.|++.+...+..
T Consensus       265 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  306 (368)
T 3reo_A          265 IFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPS  306 (368)
T ss_dssp             EEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSS
T ss_pred             EEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence            99865532     23468999999999999999988776543

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.15  E-value=4.4e-11  Score=103.45  Aligned_cols=89  Identities=18%  Similarity=0.224  Sum_probs=72.2

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCCh-------hHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-------RSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~-------~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      +...+...++.+|||+|||+|..++.++..   +++|+++|+++       ++++.|+++.+.+++.++++++++|+.+.
T Consensus        75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~  151 (258)
T 2r6z_A           75 IAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQ  151 (258)
T ss_dssp             HHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHH
T ss_pred             HHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHH
Confidence            334444455679999999999999999985   47999999999       99999999988888777799999999887


Q ss_pred             HHHHHhCCCCCcEEEEEEeCC
Q 023645          184 LKALILNGEASSYDFAFVDAE  204 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~  204 (279)
                      ++.+...  .++||+|++|+.
T Consensus       152 l~~~~~~--~~~fD~V~~dP~  170 (258)
T 2r6z_A          152 MPALVKT--QGKPDIVYLDPM  170 (258)
T ss_dssp             HHHHHHH--HCCCSEEEECCC
T ss_pred             HHhhhcc--CCCccEEEECCC
Confidence            7655210  168999999875

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.14  E-value=1.4e-10  Score=96.80  Aligned_cols=96  Identities=15%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      ..++..+....++.+|||||||+|..+..++      .+++++|+++.                +++++++|+.+. + .
T Consensus        56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~~-~-~  111 (215)
T 2zfu_A           56 DRIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQV-P-L  111 (215)
T ss_dssp             HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTSC-S-C
T ss_pred             HHHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEeccccC-C-C
Confidence            3455555555667899999999999887662      58999999997                367888888652 1 1


Q ss_pred             HhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          188 ILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                          .+++||+|++...  ..+...+++.+.++|+|||.+++.+..
T Consensus       112 ----~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~  153 (215)
T 2zfu_A          112 ----EDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVS  153 (215)
T ss_dssp             ----CTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             ----CCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence                1478999998754  355678999999999999999997643

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.14  E-value=6.3e-11  Score=108.96  Aligned_cols=110  Identities=15%  Similarity=0.226  Sum_probs=84.2

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ..+.+....++..++...++.+|||+|||+|..+..+++..+...+++|+|+++.+++.|          .+++++++|+
T Consensus        21 ~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~   90 (421)
T 2ih2_A           21 VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADF   90 (421)
T ss_dssp             CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCG
T ss_pred             EeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCCh
Confidence            344566666666665544567999999999999999998763367999999999998776          3589999999


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCc--------------c------------------chHHHHHHHHccCCCCcEEEE
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEK--------------R------------------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~--------------~------------------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .+..+       .++||+|+++++.              .                  .+..+++.+.++|+|||.+++
T Consensus        91 ~~~~~-------~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~  162 (421)
T 2ih2_A           91 LLWEP-------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  162 (421)
T ss_dssp             GGCCC-------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhcCc-------cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence            76421       4689999997541              1                  112568888999999998877

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.13  E-value=1.5e-10  Score=105.97  Aligned_cols=118  Identities=14%  Similarity=0.162  Sum_probs=87.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-------------------------------------CC
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-------------------------------------SG  145 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~-------------------------------------~~  145 (279)
                      +.+..+..+..++...++..|||.+||+|.+++.++.....                                     ..
T Consensus       185 l~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  264 (393)
T 3k0b_A          185 IKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL  264 (393)
T ss_dssp             CCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             CcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence            45555555666666667789999999999999887764321                                     14


Q ss_pred             EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc-------chHHHHHHHHcc
Q 023645          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQL  218 (279)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~-------~~~~~l~~~~~~  218 (279)
                      +|+|+|+++.+++.|+++++.+|+.++++++++|+.+...       ..+||+|++|++..       ....++..+.+.
T Consensus       265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~-------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~  337 (393)
T 3k0b_A          265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT-------EDEYGVVVANPPYGERLEDEEAVRQLYREMGIV  337 (393)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC-------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC-------CCCCCEEEECCCCccccCCchhHHHHHHHHHHH
Confidence            6999999999999999999999998889999999986532       46899999998742       233344444444


Q ss_pred             CCC--CcEEEE
Q 023645          219 IRV--GGIIVI  227 (279)
Q Consensus       219 Lk~--gG~lv~  227 (279)
                      |++  ||.+.+
T Consensus       338 lk~~~g~~~~i  348 (393)
T 3k0b_A          338 YKRMPTWSVYV  348 (393)
T ss_dssp             HHTCTTCEEEE
T ss_pred             HhcCCCCEEEE
Confidence            444  665554

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.13  E-value=2.3e-10  Score=103.66  Aligned_cols=99  Identities=16%  Similarity=0.088  Sum_probs=79.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++       ..+++++.+|+.+.+        ... |
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~--------p~~-D  261 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMFKEV--------PSG-D  261 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTTCC--------CCC-S
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcCCCC--------CCC-C
Confidence            3568999999999999999999987 789999999 888766653       257999999997521        223 9


Q ss_pred             EEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          198 FAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       198 lI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      +|++....     +.....++++.+.|+|||.+++.+...+.
T Consensus       262 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  303 (364)
T 3p9c_A          262 TILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV  303 (364)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred             EEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            99986543     33457899999999999999998877654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.11  E-value=1.3e-09  Score=92.51  Aligned_cols=145  Identities=10%  Similarity=-0.010  Sum_probs=94.1

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ....++.+|||||||+|.+++.+.   + ..+|+++|+++.+++.+++++...|.  +.++.++|.....+       .+
T Consensus       101 ~~~~~p~~VLDlGCG~gpLal~~~---~-~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~-------~~  167 (253)
T 3frh_A          101 FSAETPRRVLDIACGLNPLALYER---G-IASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPP-------AE  167 (253)
T ss_dssp             TSSCCCSEEEEETCTTTHHHHHHT---T-CSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCC-------CC
T ss_pred             hcCCCCCeEEEecCCccHHHHHhc---c-CCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCC-------CC
Confidence            333568899999999999998877   3 68999999999999999999988774  47899999875433       57


Q ss_pred             cEEEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeec
Q 023645          195 SYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPI  269 (279)
Q Consensus       195 ~fDlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~  269 (279)
                      +||+|++.-..     ......+ .+...|+++|++|--++-.   +......  -.....+.++..........-.+-+
T Consensus       168 ~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfPtks---l~Gr~~g--m~~~Y~~~~e~~~~~~~~~~~~~~~  241 (253)
T 3frh_A          168 AGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFPTRS---LGGRGKG--MEANYAAWFEGGLPAEFEIEDKKTI  241 (253)
T ss_dssp             BCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEECC----------------CHHHHHHHHSCTTEEEEEEEEE
T ss_pred             CcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcChHH---hcCCCcc--hhhHHHHHHHHHhhccchhhhheec
Confidence            99999876431     1122333 6777999999998765321   1111100  0001222333333444455556667


Q ss_pred             CCceEEEEE
Q 023645          270 GDGMTICQK  278 (279)
Q Consensus       270 ~~G~~i~~~  278 (279)
                      ++-+....+
T Consensus       242 ~nEl~~~i~  250 (253)
T 3frh_A          242 GTELIYLIK  250 (253)
T ss_dssp             TTEEEEEEE
T ss_pred             CceEEEEEe
Confidence            776655443

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.11  E-value=1.3e-09  Score=98.24  Aligned_cols=124  Identities=13%  Similarity=0.075  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC-----CcEEEEEcCh
Q 023645          106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-----HKVKIKHGLA  180 (279)
Q Consensus       106 ~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-----~~v~~~~gd~  180 (279)
                      ....+...++...++.+|||+++|.|.-|..++...+ ++.|+++|+++..++..++++++.+..     .++.+...|+
T Consensus       135 ~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~  213 (359)
T 4fzv_A          135 AASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDG  213 (359)
T ss_dssp             GGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCG
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCch
Confidence            3445566666777888999999999999999998655 678999999999999999999988764     4689999998


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCccc---------------------------hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEKRM---------------------------YQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~~~---------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ....+..     .+.||.|++|++...                           ..+.++.+.++|||||+||...+-..
T Consensus       214 ~~~~~~~-----~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~  288 (359)
T 4fzv_A          214 RKWGELE-----GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS  288 (359)
T ss_dssp             GGHHHHS-----TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred             hhcchhc-----cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence            7654432     578999999976211                           13467778899999999999877654


Q ss_pred             Cc
Q 023645          234 GK  235 (279)
Q Consensus       234 g~  235 (279)
                      -.
T Consensus       289 ~~  290 (359)
T 4fzv_A          289 HL  290 (359)
T ss_dssp             TT
T ss_pred             hh
Confidence            43

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.10  E-value=1.8e-10  Score=105.19  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=86.7

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC-------------------------------------CCCE
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP-------------------------------------ESGC  146 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~-------------------------------------~~~~  146 (279)
                      .+..+..+..++...++.+|||+|||+|.+++.++....                                     ...+
T Consensus       180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            444555555555556678999999999999998876532                                     1157


Q ss_pred             EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc-------chHHHHHHHHccC
Q 023645          147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLI  219 (279)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~-------~~~~~l~~~~~~L  219 (279)
                      |+|+|+++.+++.|++++..+|+.+.+++.++|+.+...       ..+||+|++|++..       ....++..+.+.|
T Consensus       260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~l  332 (385)
T 3ldu_A          260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS-------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAF  332 (385)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999998889999999987532       46899999998742       2334455554555


Q ss_pred             CC--CcEEEE
Q 023645          220 RV--GGIIVI  227 (279)
Q Consensus       220 k~--gG~lv~  227 (279)
                      ++  |+.+.+
T Consensus       333 k~~~g~~~~i  342 (385)
T 3ldu_A          333 RKLKNWSYYL  342 (385)
T ss_dssp             HTSBSCEEEE
T ss_pred             hhCCCCEEEE
Confidence            54  655444

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.10  E-value=3.6e-10  Score=103.09  Aligned_cols=118  Identities=13%  Similarity=0.112  Sum_probs=88.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-------------------------------------CC
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-------------------------------------SG  145 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~-------------------------------------~~  145 (279)
                      +.+..+..+..+....++..+||.+||+|.+.+..+.....                                     ..
T Consensus       178 l~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  257 (384)
T 3ldg_A          178 IKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL  257 (384)
T ss_dssp             CCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             CcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence            44555555556666667789999999999999887764321                                     14


Q ss_pred             EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCc-------cchHHHHHHHHcc
Q 023645          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-------RMYQEYFELLLQL  218 (279)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~-------~~~~~~l~~~~~~  218 (279)
                      +|+|+|+++.+++.|++|++.+|+.++++++++|+.+...       ..+||+|++|++.       .....++..+.+.
T Consensus       258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~-------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~  330 (384)
T 3ldg_A          258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT-------NKINGVLISNPPYGERLLDDKAVDILYNEMGET  330 (384)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC-------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc-------cCCcCEEEECCchhhccCCHHHHHHHHHHHHHH
Confidence            6999999999999999999999998889999999987532       3589999999873       2344455555555


Q ss_pred             CCC--CcEEEE
Q 023645          219 IRV--GGIIVI  227 (279)
Q Consensus       219 Lk~--gG~lv~  227 (279)
                      ||+  ||.+.+
T Consensus       331 lk~~~g~~~~i  341 (384)
T 3ldg_A          331 FAPLKTWSQFI  341 (384)
T ss_dssp             HTTCTTSEEEE
T ss_pred             HhhCCCcEEEE
Confidence            555  765554

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.09  E-value=7.5e-10  Score=97.43  Aligned_cols=103  Identities=13%  Similarity=0.053  Sum_probs=79.4

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ..+.+.....+...+...++.+|||||||+|..|..+++.   ..+|+++|+++++++.+++++..  . .+++++++|+
T Consensus        32 fL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~--~-~~v~vi~gD~  105 (295)
T 3gru_A           32 FLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKEL--Y-NNIEIIWGDA  105 (295)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHH--C-SSEEEEESCT
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhcc--C-CCeEEEECch
Confidence            4556666666666666677889999999999999999987   46999999999999999999873  2 3699999999


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHH
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELL  215 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~  215 (279)
                      .+....      +.+||.|+.+.+.......+..+
T Consensus       106 l~~~~~------~~~fD~Iv~NlPy~is~pil~~l  134 (295)
T 3gru_A          106 LKVDLN------KLDFNKVVANLPYQISSPITFKL  134 (295)
T ss_dssp             TTSCGG------GSCCSEEEEECCGGGHHHHHHHH
T ss_pred             hhCCcc------cCCccEEEEeCcccccHHHHHHH
Confidence            864211      35799999987755444444333

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.09  E-value=8e-10  Score=97.55  Aligned_cols=87  Identities=16%  Similarity=0.093  Sum_probs=70.6

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++.+|||+|||+|..+..+++.++ +++|+++|.|+.+++.|+++++..+  ++++++++|+.+....+...+ ..+
T Consensus        23 ~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g-~~~   98 (301)
T 1m6y_A           23 KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLG-IEK   98 (301)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTT-CSC
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcC-CCC
Confidence            345678999999999999999999987 7899999999999999999998777  579999999876432222111 258


Q ss_pred             EEEEEEeCCcc
Q 023645          196 YDFAFVDAEKR  206 (279)
Q Consensus       196 fDlI~id~~~~  206 (279)
                      ||.|++|.+..
T Consensus        99 ~D~Vl~D~gvS  109 (301)
T 1m6y_A           99 VDGILMDLGVS  109 (301)
T ss_dssp             EEEEEEECSCC
T ss_pred             CCEEEEcCccc
Confidence            99999998643

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.06  E-value=1.1e-10  Score=106.00  Aligned_cols=99  Identities=15%  Similarity=0.100  Sum_probs=79.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++..| +.+++++|+ +.+++.|++      . .+++++.+|+.+.   +     .. ||
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~---~-----~~-~D  269 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFAS---V-----PQ-GD  269 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTTC---C-----CC-EE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCcccC---C-----CC-CC
Confidence            3467999999999999999999987 689999999 888877664      1 3599999999752   1     23 99


Q ss_pred             EEEEeCCcc---c--hHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          198 FAFVDAEKR---M--YQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       198 lI~id~~~~---~--~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      +|++....+   +  ...+++.+.+.|+|||.+++.+...+.
T Consensus       270 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  311 (372)
T 1fp1_D          270 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE  311 (372)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECS
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            999876532   2  237899999999999999998776544

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.06  E-value=1.6e-10  Score=107.51  Aligned_cols=120  Identities=9%  Similarity=0.075  Sum_probs=94.2

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC------------CCCEEEEEeCChhHHHHHHHHHHHhC
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP------------ESGCLVACERDARSLEVAKKYYERAG  168 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~------------~~~~v~~iD~s~~~~~~a~~~~~~~g  168 (279)
                      ..+++....++..++...++.+|||.|||+|.+...+++.+.            ...+++|+|+++.+++.|+.++...|
T Consensus       153 fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g  232 (445)
T 2okc_A          153 YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG  232 (445)
T ss_dssp             GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT
T ss_pred             ccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC
Confidence            345667777777777666678999999999999999887641            13579999999999999999998888


Q ss_pred             CCC-cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccc--------------------hHHHHHHHHccCCCCcEEEE
Q 023645          169 VSH-KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM--------------------YQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       169 ~~~-~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~--------------------~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ... .+.++++|+.....       ..+||+|+.+++...                    ...+++.+.++|+|||.+++
T Consensus       233 ~~~~~~~i~~gD~l~~~~-------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          233 IGTDRSPIVCEDSLEKEP-------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             CCSSCCSEEECCTTTSCC-------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCcCCCCEeeCCCCCCcc-------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence            753 57899999875421       358999999875221                    14789999999999998865

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.05  E-value=3.6e-10  Score=108.31  Aligned_cols=102  Identities=18%  Similarity=0.201  Sum_probs=77.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ..+.+|||||||+|..+..||+.   +++|||||.++.+++.|+....+.|.. +++++++++.+.....    ++++||
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~----~~~~fD  136 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAAL----EEGEFD  136 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHC----CTTSCS
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhc----cCCCcc
Confidence            35679999999999999999986   679999999999999999999877754 4999999998765432    257899


Q ss_pred             EEEEeCCccchH-----HHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEKRMYQ-----EYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~~~~~-----~~l~~~~~~Lk~gG~lv~  227 (279)
                      +|++-...++..     ..+..+.+.|+++|...+
T Consensus       137 ~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          137 LAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI  171 (569)
T ss_dssp             EEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred             EEEECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence            999876644322     123344566777765444

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.05  E-value=3.3e-10  Score=103.81  Aligned_cols=77  Identities=16%  Similarity=0.153  Sum_probs=67.3

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--CCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      +.+|||+|||+|..++.+++.   +.+|+++|+++.+++.|+++++..  |+ ++++++++|+.+.++...    .++||
T Consensus        94 g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~----~~~fD  165 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK----TFHPD  165 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH----HHCCS
T ss_pred             CCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc----CCCce
Confidence            789999999999999999876   469999999999999999999988  88 579999999998765431    35899


Q ss_pred             EEEEeCC
Q 023645          198 FAFVDAE  204 (279)
Q Consensus       198 lI~id~~  204 (279)
                      +||+|++
T Consensus       166 vV~lDPP  172 (410)
T 3ll7_A          166 YIYVDPA  172 (410)
T ss_dssp             EEEECCE
T ss_pred             EEEECCC
Confidence            9999975

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.03  E-value=2.6e-10  Score=102.73  Aligned_cols=99  Identities=14%  Similarity=0.130  Sum_probs=79.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++      . .+++++.+|+.+.+         ..||
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~~---------p~~D  248 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFTSI---------PNAD  248 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTTCC---------CCCS
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhccc------C-CCcEEEeccccCCC---------CCcc
Confidence            4568999999999999999999987 679999999 998887765      1 24999999986521         2499


Q ss_pred             EEEEeCCcc---c--hHHHHHHHHccCCC---CcEEEEeCCCCCC
Q 023645          198 FAFVDAEKR---M--YQEYFELLLQLIRV---GGIIVIDNVLWHG  234 (279)
Q Consensus       198 lI~id~~~~---~--~~~~l~~~~~~Lk~---gG~lv~dd~~~~g  234 (279)
                      +|++....+   +  ....++++.+.|+|   ||.+++.+..++.
T Consensus       249 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~  293 (352)
T 1fp2_A          249 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK  293 (352)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred             EEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCC
Confidence            999876522   2  33789999999999   9999988776543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.01  E-value=2.4e-09  Score=92.32  Aligned_cols=106  Identities=11%  Similarity=0.064  Sum_probs=77.9

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ..+++.....+...+...++.+|||||||+|..|..+++.   +++|+++|+++++++.+++++..   ..+++++++|+
T Consensus        11 FL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~   84 (255)
T 3tqs_A           11 FLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDA   84 (255)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCT
T ss_pred             cccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcch
Confidence            3456666666666666777889999999999999999986   36999999999999999998864   34699999999


Q ss_pred             hhH-HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHH
Q 023645          181 ADS-LKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (279)
Q Consensus       181 ~~~-l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~  216 (279)
                      .+. ++.+.   ..++|| |+.+.+..-....+..+.
T Consensus        85 ~~~~~~~~~---~~~~~~-vv~NlPY~is~~il~~ll  117 (255)
T 3tqs_A           85 LQFDFSSVK---TDKPLR-VVGNLPYNISTPLLFHLF  117 (255)
T ss_dssp             TTCCGGGSC---CSSCEE-EEEECCHHHHHHHHHHHH
T ss_pred             HhCCHHHhc---cCCCeE-EEecCCcccCHHHHHHHH
Confidence            875 22210   125788 777776544334444443

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.00  E-value=1.5e-10  Score=99.95  Aligned_cols=105  Identities=12%  Similarity=0.142  Sum_probs=73.9

Q ss_pred             HHHHHhhcCC--CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--------CCCcEEEEEcCh
Q 023645          111 LAMLVQILGA--QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--------VSHKVKIKHGLA  180 (279)
Q Consensus       111 l~~l~~~~~~--~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--------~~~~v~~~~gd~  180 (279)
                      +...+...++  .+|||+|||+|..++.+++.   +++|+++|.++.+.+.++++++.+.        +.++++++++|+
T Consensus        78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            3344444555  79999999999999999987   4689999999999888888776542        324799999999


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCccch--HHHHHHHHccCCCCc
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEKRMY--QEYFELLLQLIRVGG  223 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~~~~--~~~l~~~~~~Lk~gG  223 (279)
                      .+.++.+     .++||+||+|+.....  ...+++..+.|++.+
T Consensus       155 ~~~L~~~-----~~~fDvV~lDP~y~~~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          155 LTALTDI-----TPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHSTTC-----SSCCSEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred             HHHHHhC-----cccCCEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence            8876543     3579999999863321  223344444554433

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.97  E-value=1.7e-09  Score=102.96  Aligned_cols=123  Identities=8%  Similarity=-0.014  Sum_probs=94.8

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-----------------CCEEEEEeCChhHHHHHHH
Q 023645          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-----------------SGCLVACERDARSLEVAKK  162 (279)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~-----------------~~~v~~iD~s~~~~~~a~~  162 (279)
                      ..-+++....++..++...++.+|+|.+||+|.+.+.+++.+..                 ..+++|+|+++.+++.|+.
T Consensus       150 ~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~  229 (541)
T 2ar0_A          150 QYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM  229 (541)
T ss_dssp             CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHH
T ss_pred             eeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHH
Confidence            34456666777777776666789999999999999888876421                 1379999999999999999


Q ss_pred             HHHHhCCCC----cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccc-----------------hHHHHHHHHccCCC
Q 023645          163 YYERAGVSH----KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-----------------YQEYFELLLQLIRV  221 (279)
Q Consensus       163 ~~~~~g~~~----~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~-----------------~~~~l~~~~~~Lk~  221 (279)
                      ++...|...    ++.++++|++......     ..+||+|+.+++...                 ...+++.+.+.|+|
T Consensus       230 nl~l~gi~~~~~~~~~I~~gDtL~~~~~~-----~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~  304 (541)
T 2ar0_A          230 NCLLHDIEGNLDHGGAIRLGNTLGSDGEN-----LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP  304 (541)
T ss_dssp             HHHTTTCCCBGGGTBSEEESCTTSHHHHT-----SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE
T ss_pred             HHHHhCCCccccccCCeEeCCCccccccc-----ccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC
Confidence            998888764    2789999987653321     468999999876221                 23688999999999


Q ss_pred             CcEEEE
Q 023645          222 GGIIVI  227 (279)
Q Consensus       222 gG~lv~  227 (279)
                      ||.+++
T Consensus       305 gGr~a~  310 (541)
T 2ar0_A          305 GGRAAV  310 (541)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence            998766

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.96  E-value=3.5e-09  Score=90.61  Aligned_cols=93  Identities=12%  Similarity=0.079  Sum_probs=67.9

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .+++.....+...+...++.+|||||||+|..+..+++..   ++|+++|+++++++.+++++..   .++++++++|+.
T Consensus        13 l~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~---~~~v~~~~~D~~   86 (244)
T 1qam_A           13 ITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDIL   86 (244)
T ss_dssp             CCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGG
T ss_pred             cCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc---CCCeEEEEChHH
Confidence            4455555545444455567899999999999999999874   6999999999999999998763   246999999997


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCcc
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKR  206 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~  206 (279)
                      +....     +...| .|+.+.+..
T Consensus        87 ~~~~~-----~~~~~-~vv~nlPy~  105 (244)
T 1qam_A           87 QFKFP-----KNQSY-KIFGNIPYN  105 (244)
T ss_dssp             GCCCC-----SSCCC-EEEEECCGG
T ss_pred             hCCcc-----cCCCe-EEEEeCCcc
Confidence            64210     02345 466666543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.95  E-value=2.5e-09  Score=93.78  Aligned_cols=90  Identities=20%  Similarity=0.251  Sum_probs=67.9

Q ss_pred             hcCCCEEEEEcCcc------CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEE-EEcChhhHHHHHHh
Q 023645          117 ILGAQRCIEVGVYT------GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI-KHGLAADSLKALIL  189 (279)
Q Consensus       117 ~~~~~~VLEiG~G~------G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~-~~gd~~~~l~~~~~  189 (279)
                      ..++.+|||+|||+      |.  ..+++..+++++|+++|+++.             + .++++ +++|+.+...    
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~~----  120 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVHT----  120 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCCC----
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCCc----
Confidence            34567999999955      55  556667776789999999998             1 24788 9999975321    


Q ss_pred             CCCCCcEEEEEEeCCcc--------------chHHHHHHHHccCCCCcEEEEeC
Q 023645          190 NGEASSYDFAFVDAEKR--------------MYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       190 ~~~~~~fDlI~id~~~~--------------~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                         .++||+|+++....              .+...++.+.+.|||||.+++..
T Consensus       121 ---~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          121 ---ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             ---SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence               36899999974311              13478899999999999999964

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.93  E-value=1.7e-10  Score=100.18  Aligned_cols=100  Identities=11%  Similarity=-0.061  Sum_probs=69.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHH-HHhCCCCcEEEE--EcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-ERAGVSHKVKIK--HGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-~~~g~~~~v~~~--~gd~~~~l~~~~~~~~~~  194 (279)
                      .++.+|||||||+|.++..+++.    ++|+++|+++ +...+++.. .......+++++  ++|+.+. +       ++
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~-------~~  139 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL-P-------VE  139 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS-C-------CC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC-C-------CC
Confidence            45679999999999999999875    5899999998 422221110 000011158888  8898753 1       47


Q ss_pred             cEEEEEEeCCc--cc-----h--HHHHHHHHccCCCCc--EEEEeCC
Q 023645          195 SYDFAFVDAEK--RM-----Y--QEYFELLLQLIRVGG--IIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~~--~~-----~--~~~l~~~~~~Lk~gG--~lv~dd~  230 (279)
                      +||+|++|...  ..     .  ...++.+.++|+|||  .+++...
T Consensus       140 ~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~  186 (265)
T 2oxt_A          140 RTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL  186 (265)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             CCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence            89999998541  01     1  136788889999999  9998543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.93  E-value=3.3e-09  Score=92.22  Aligned_cols=104  Identities=15%  Similarity=0.058  Sum_probs=78.3

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      ...+++.....+...+...++ +|||||||+|..|..+++.   +++|+++|+++++++.+++++.    ..+++++++|
T Consensus        28 nfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~----~~~v~vi~~D   99 (271)
T 3fut_A           28 NFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLS----GLPVRLVFQD   99 (271)
T ss_dssp             CEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTT----TSSEEEEESC
T ss_pred             cccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcC----CCCEEEEECC
Confidence            345667666666666666777 9999999999999999986   3689999999999999999875    2469999999


Q ss_pred             hhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHH
Q 023645          180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (279)
Q Consensus       180 ~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~  216 (279)
                      +.+....-     ...+|.|+.+.+..-....+..+.
T Consensus       100 ~l~~~~~~-----~~~~~~iv~NlPy~iss~il~~ll  131 (271)
T 3fut_A          100 ALLYPWEE-----VPQGSLLVANLPYHIATPLVTRLL  131 (271)
T ss_dssp             GGGSCGGG-----SCTTEEEEEEECSSCCHHHHHHHH
T ss_pred             hhhCChhh-----ccCccEEEecCcccccHHHHHHHh
Confidence            98652110     136899998877554444444444

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.92  E-value=2.7e-10  Score=100.81  Aligned_cols=96  Identities=10%  Similarity=0.042  Sum_probs=67.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeC----ChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER----DARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGE  192 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~----s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~~  192 (279)
                      .++.+|||+|||+|.++..+++.    ++|+++|+    ++.+++.+.  .+..+ .++++++++ |+.+. +       
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l-~-------  145 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFI-P-------  145 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTS-C-------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccC-C-------
Confidence            34679999999999999999975    48999999    554332110  11111 146999999 88643 1       


Q ss_pred             CCcEEEEEEeCCcc--c----h---HHHHHHHHccCCCCcEEEEe
Q 023645          193 ASSYDFAFVDAEKR--M----Y---QEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       193 ~~~fDlI~id~~~~--~----~---~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .++||+|++|....  .    .   ...+..+.++|||||.++++
T Consensus       146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            46899999986531  1    1   14677788999999999985

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.91  E-value=2.3e-09  Score=96.68  Aligned_cols=99  Identities=13%  Similarity=0.076  Sum_probs=78.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      . .+++++.+|+.+  +       ...||
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~--~-------~~~~D  253 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK--S-------IPSAD  253 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT--C-------CCCCS
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC--C-------CCCce
Confidence            4668999999999999999999987 679999999 788766654      2 349999999975  1       13599


Q ss_pred             EEEEeCCcc---c--hHHHHHHHHccCCC---CcEEEEeCCCCCC
Q 023645          198 FAFVDAEKR---M--YQEYFELLLQLIRV---GGIIVIDNVLWHG  234 (279)
Q Consensus       198 lI~id~~~~---~--~~~~l~~~~~~Lk~---gG~lv~dd~~~~g  234 (279)
                      +|++....+   +  ....++.+.+.|+|   ||.+++.+...+.
T Consensus       254 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~  298 (358)
T 1zg3_A          254 AVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDE  298 (358)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECT
T ss_pred             EEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCC
Confidence            999876522   2  34889999999999   9999987776543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.90  E-value=3.7e-09  Score=101.61  Aligned_cols=100  Identities=12%  Similarity=0.076  Sum_probs=77.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHH---CCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          120 AQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ...|||+|||+|..+...+++   .....+|++||.++ +...|++..+.+++.++|++++||+.+.-  +     .+++
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~--L-----PEKV  429 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWV--A-----PEKA  429 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCC--C-----SSCE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceecc--C-----Cccc
Confidence            357999999999985554443   33234799999997 67788999999999999999999998752  1     5799


Q ss_pred             EEEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |+|+...-     .+...+.+....++|||||+++=
T Consensus       430 DIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiP  465 (637)
T 4gqb_A          430 DIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIP  465 (637)
T ss_dssp             EEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEES
T ss_pred             CEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEcc
Confidence            99986421     44455667666799999999863

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.90  E-value=1.1e-10  Score=101.86  Aligned_cols=99  Identities=6%  Similarity=-0.084  Sum_probs=69.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHH-HHhCCCCcEEEE--EcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-ERAGVSHKVKIK--HGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-~~~g~~~~v~~~--~gd~~~~l~~~~~~~~~~  194 (279)
                      .++.+|||+|||+|.++..+++.    ++|+++|+++ +...+++.. .......+++++  ++|+.+. +       ++
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~-------~~  147 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-E-------PF  147 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-C-------CC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-C-------CC
Confidence            35679999999999999999875    5899999998 432222110 000111158898  8998753 1       47


Q ss_pred             cEEEEEEeCCcc--c-----h--HHHHHHHHccCCCCc--EEEEeC
Q 023645          195 SYDFAFVDAEKR--M-----Y--QEYFELLLQLIRVGG--IIVIDN  229 (279)
Q Consensus       195 ~fDlI~id~~~~--~-----~--~~~l~~~~~~Lk~gG--~lv~dd  229 (279)
                      +||+|++|....  .     .  ...++.+.++|+|||  .++++.
T Consensus       148 ~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          148 QADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            899999986410  1     1  136788889999999  999854

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.88  E-value=5.5e-09  Score=94.23  Aligned_cols=146  Identities=14%  Similarity=0.131  Sum_probs=102.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh---CC----CCcEEEEEcChhhHHHHHHhCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---GV----SHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---g~----~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      ++++||-||.|.|..+..+++. + ..+|+.+|++++.++.+++.+...   ..    .++++++.+|+.+++....+. 
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~-  281 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE-  281 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH-
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc-
Confidence            5789999999999999999875 4 379999999999999999986421   11    246899999999988754322 


Q ss_pred             CCCcEEEEEEeCCc-------------cchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhh
Q 023645          192 EASSYDFAFVDAEK-------------RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLME  258 (279)
Q Consensus       192 ~~~~fDlI~id~~~-------------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  258 (279)
                       .++||+|++|...             -...++++.+.+.|+|||+++...-.    +.    .   ...+..+.+.+..
T Consensus       282 -~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s----~~----~---~~~~~~i~~tl~~  349 (381)
T 3c6k_A          282 -GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC----VN----L---TEALSLYEEQLGR  349 (381)
T ss_dssp             -TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE----TT----C---HHHHHHHHHHHTT
T ss_pred             -cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCC----Cc----c---hhHHHHHHHHHHH
Confidence             4689999999521             11356788999999999999985311    11    0   1124455555544


Q ss_pred             C-CCeEE----EEeec---CCceEEEEEC
Q 023645          259 D-ERVSI----SMVPI---GDGMTICQKR  279 (279)
Q Consensus       259 ~-~~~~~----~~lp~---~~G~~i~~~~  279 (279)
                      - +.+..    +.+|.   ..|+.+|.|+
T Consensus       350 vF~~v~~~~~~~~VPSy~~~W~F~~aSK~  378 (381)
T 3c6k_A          350 LYCPVEFSKEIVCVPSYLELWVFYTVWKK  378 (381)
T ss_dssp             SSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred             hCCcceEeeEEEEecCCCCceeeeEEECC
Confidence            2 33432    23453   4688888874

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.86  E-value=5.2e-11  Score=101.99  Aligned_cols=112  Identities=10%  Similarity=0.142  Sum_probs=78.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      .+.....+...+...++.+|||||||+|..+..+++..   ++|+++|+++++++.+++++.   ..++++++++|+.+.
T Consensus        14 ~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~   87 (245)
T 1yub_A           14 SEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQF   87 (245)
T ss_dssp             CTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTT
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhc
Confidence            33344444444445567799999999999999999873   699999999999999888765   235799999999764


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCccc----hH----------HHH----HHHHccCCCCcEEEE
Q 023645          184 LKALILNGEASSYDFAFVDAEKRM----YQ----------EYF----ELLLQLIRVGGIIVI  227 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~~----~~----------~~l----~~~~~~Lk~gG~lv~  227 (279)
                      .  +   ..+++| .|+.+.+...    ..          .++    +.+.++|+|||.+.+
T Consensus        88 ~--~---~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A           88 Q--F---PNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             T--C---CCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             C--c---ccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence            2  1   002578 6777754221    11          122    557789999998765

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.86  E-value=3.6e-09  Score=100.60  Aligned_cols=157  Identities=13%  Similarity=0.162  Sum_probs=107.9

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC--------------CCEEEEEeCChhHHHHHHHH
Q 023645           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE--------------SGCLVACERDARSLEVAKKY  163 (279)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~--------------~~~v~~iD~s~~~~~~a~~~  163 (279)
                      .+..-+++....++..++...++ +|+|.+||+|.+.+.+++.+..              ..+++|+|+++.++..|+.+
T Consensus       224 ~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~N  302 (544)
T 3khk_A          224 GGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMN  302 (544)
T ss_dssp             STTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHH
T ss_pred             CCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHH
Confidence            34556778888888887765444 9999999999998887654320              35899999999999999999


Q ss_pred             HHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccc--------------------------------hHHH
Q 023645          164 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM--------------------------------YQEY  211 (279)
Q Consensus       164 ~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~--------------------------------~~~~  211 (279)
                      +..+|+..++.+.++|.+.....     ...+||+|+.+++...                                ...+
T Consensus       303 l~l~gi~~~i~i~~gDtL~~~~~-----~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~F  377 (544)
T 3khk_A          303 MVIRGIDFNFGKKNADSFLDDQH-----PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAW  377 (544)
T ss_dssp             HHHTTCCCBCCSSSCCTTTSCSC-----TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHH
T ss_pred             HHHhCCCcccceeccchhcCccc-----ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHH
Confidence            99989876665688887643111     1468999999876221                                1257


Q ss_pred             HHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEE-Eee
Q 023645          212 FELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS-MVP  268 (279)
Q Consensus       212 l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~lp  268 (279)
                      ++.+.+.|+|||.+++  ++.+|.+...   ..   +-..+.++|.++..++++ .+|
T Consensus       378 l~~~l~~Lk~gGr~ai--VlP~g~L~~~---~~---~~~~iRk~Lle~~~l~aII~LP  427 (544)
T 3khk_A          378 MLHMLYHLAPTGSMAL--LLANGSMSSN---TN---NEGEIRKTLVEQDLVECMVALP  427 (544)
T ss_dssp             HHHHHHTEEEEEEEEE--EEETHHHHCC---GG---GHHHHHHHHHHTTCEEEEEECC
T ss_pred             HHHHHHHhccCceEEE--EecchhhhcC---cc---hHHHHHHHHHhCCcHhEEEECC
Confidence            8899999999998655  2222222111   00   124455666677777654 455

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.85  E-value=1.7e-08  Score=88.11  Aligned_cols=110  Identities=13%  Similarity=0.095  Sum_probs=75.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      ..+++.....+...+...++.+|||||||+|..|..+++..+. +++|+++|+++++++.++++.     ..+++++++|
T Consensus        24 fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D   98 (279)
T 3uzu_A           24 FLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGD   98 (279)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESC
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECC
Confidence            4456666655666666667889999999999999999987542 245999999999999999883     3469999999


Q ss_pred             hhhH-HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHH
Q 023645          180 AADS-LKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (279)
Q Consensus       180 ~~~~-l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~  216 (279)
                      +.+. ++.+...+ ....+.|+.+.+..-....+..+.
T Consensus        99 ~~~~~~~~~~~~~-~~~~~~vv~NlPY~iss~il~~ll  135 (279)
T 3uzu_A           99 ALTFDFGSIARPG-DEPSLRIIGNLPYNISSPLLFHLM  135 (279)
T ss_dssp             GGGCCGGGGSCSS-SSCCEEEEEECCHHHHHHHHHHHG
T ss_pred             hhcCChhHhcccc-cCCceEEEEccCccccHHHHHHHH
Confidence            9874 22221000 013456777776544444444443

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.82  E-value=2.6e-08  Score=94.55  Aligned_cols=158  Identities=13%  Similarity=0.149  Sum_probs=112.0

Q ss_pred             CCCCCCCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCC--CCCEEEEEeCChhHHHHHHHHHHHhCCC-
Q 023645           98 GSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVS-  170 (279)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~g~~-  170 (279)
                      .+..-+++....++..++.    ..++.+|+|.+||+|.+.+.+++.+.  ...+++|+|+++.++..|+.++..+|.. 
T Consensus       196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~  275 (542)
T 3lkd_A          196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI  275 (542)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence            3455678888888888877    34667999999999999999988863  2468999999999999999999988885 


Q ss_pred             CcEEEEEcChhhHH-HHHHhCCCCCcEEEEEEeCCccc----------------h----------HHHHHHHHccCC-CC
Q 023645          171 HKVKIKHGLAADSL-KALILNGEASSYDFAFVDAEKRM----------------Y----------QEYFELLLQLIR-VG  222 (279)
Q Consensus       171 ~~v~~~~gd~~~~l-~~~~~~~~~~~fDlI~id~~~~~----------------~----------~~~l~~~~~~Lk-~g  222 (279)
                      +++.+.++|.+... +.    ....+||+|+.+++...                +          ..+++.+.+.|+ +|
T Consensus       276 ~~~~I~~gDtL~~d~p~----~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~g  351 (542)
T 3lkd_A          276 ENQFLHNADTLDEDWPT----QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDN  351 (542)
T ss_dssp             GGEEEEESCTTTSCSCC----SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTT
T ss_pred             CccceEecceecccccc----cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCc
Confidence            46899999987531 10    11478999999865110                1          237888999999 99


Q ss_pred             cEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEE-Eee
Q 023645          223 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS-MVP  268 (279)
Q Consensus       223 G~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~lp  268 (279)
                      |.+++  ++-+|.+...    .   +-..+.++|.++..++++ .+|
T Consensus       352 Gr~a~--VlP~g~Lf~~----~---~~~~iRk~Lle~~~l~~II~LP  389 (542)
T 3lkd_A          352 GVMAI--VLPHGVLFRG----N---AEGTIRKALLEEGAIDTVIGLP  389 (542)
T ss_dssp             CEEEE--EEETHHHHCC----T---HHHHHHHHHHHTTCEEEEEECC
T ss_pred             eeEEE--EecchHhhCC----c---hhHHHHHHHHhCCceeEEEEcc
Confidence            98755  2222222110    0   124456666777777754 355

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.78  E-value=1.3e-08  Score=99.58  Aligned_cols=121  Identities=13%  Similarity=0.117  Sum_probs=87.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC---C-------------------------------------
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---P-------------------------------------  142 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~---~-------------------------------------  142 (279)
                      +.+..+..+..++...++..|||.+||+|.+.+.++...   +                                     
T Consensus       174 l~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~  253 (703)
T 3v97_A          174 IKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA  253 (703)
T ss_dssp             SCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence            455555656666665667899999999999998877642   1                                     


Q ss_pred             -CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc-------chHHHHHH
Q 023645          143 -ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFEL  214 (279)
Q Consensus       143 -~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~-------~~~~~l~~  214 (279)
                       ...+|+|+|+++.+++.|++|++.+|+.+.+++.++|+.+..+..    ..++||+|+++++..       ....+++.
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~----~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~  329 (703)
T 3v97_A          254 EYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL----PKGPYGTVLSNPPYGERLDSEPALIALHSL  329 (703)
T ss_dssp             HCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC----TTCCCCEEEECCCCCC---CCHHHHHHHHH
T ss_pred             cCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc----ccCCCCEEEeCCCccccccchhHHHHHHHH
Confidence             125899999999999999999999999988999999998642110    123899999998732       22333333


Q ss_pred             ---HHccCCCCcEEEE
Q 023645          215 ---LLQLIRVGGIIVI  227 (279)
Q Consensus       215 ---~~~~Lk~gG~lv~  227 (279)
                         .++.+.|||.+.+
T Consensus       330 l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          330 LGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHCTTCEEEE
T ss_pred             HHHHHHhhCCCCeEEE
Confidence               3444567887655

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.75  E-value=3.1e-08  Score=85.01  Aligned_cols=115  Identities=17%  Similarity=0.104  Sum_probs=79.5

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ...++.....+...+...++.+|||||||+|..+..+++. + ..+|+++|+++.+++.++++    + ..+++++++|+
T Consensus        13 fl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~   85 (249)
T 3ftd_A           13 LLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI----G-DERLEVINEDA   85 (249)
T ss_dssp             CEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCT
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcch
Confidence            3455655555555666667789999999999999999976 2 47999999999999999876    2 24699999999


Q ss_pred             hhH-HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccC--CCCcEEEEe
Q 023645          181 ADS-LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI--RVGGIIVID  228 (279)
Q Consensus       181 ~~~-l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~L--k~gG~lv~d  228 (279)
                      .+. ++..     .+.| .|+.+.+..-....+..+....  -+.+++++.
T Consensus        86 ~~~~~~~~-----~~~~-~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Q  130 (249)
T 3ftd_A           86 SKFPFCSL-----GKEL-KVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQ  130 (249)
T ss_dssp             TTCCGGGS-----CSSE-EEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             hhCChhHc-----cCCc-EEEEECchhccHHHHHHHHhcCCCCceEEEEEe
Confidence            764 2211     1234 6777777655555555554322  344555553

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.74  E-value=4.5e-08  Score=94.27  Aligned_cols=106  Identities=10%  Similarity=-0.042  Sum_probs=75.9

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC------------CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLP------------ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~------------~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      .+.|||+|||+|..+...+.+..            ...+|++||.++.+....+.... +++.++|+++++|+.+.....
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            45899999999999754433321            13499999999987765555544 789999999999998863211


Q ss_pred             HhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEE
Q 023645          188 ILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ... ..++.|+|+...-     .+...+.+..+.+.|||||+++=
T Consensus       489 ~~~-~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          489 KDR-GFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIP  532 (745)
T ss_dssp             HHT-TCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred             ccC-CCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEEC
Confidence            111 1478999997532     33455677777899999999764

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.73  E-value=1e-07  Score=93.13  Aligned_cols=176  Identities=10%  Similarity=0.075  Sum_probs=108.3

Q ss_pred             cCChHHHHHHHHHHHcc--CCCCCCCCHHHHHHHHHHHhh------cCCCEEEEEcCccCHHHHHHHHHCCC--CCEEEE
Q 023645           80 VREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQI------LGAQRCIEVGVYTGYSSLAIALVLPE--SGCLVA  149 (279)
Q Consensus        80 ~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~------~~~~~VLEiG~G~G~~t~~la~~~~~--~~~v~~  149 (279)
                      ...++....+.+.....  ..+...+++....++..++..      .++.+|||.|||+|.+.+.+++.++.  ..+++|
T Consensus       274 ~~~DdL~ell~eya~k~Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyG  353 (878)
T 3s1s_A          274 LTGDELAELIHDIATRGRGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWA  353 (878)
T ss_dssp             CSSHHHHHHHHHHHTTSCCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEE
T ss_pred             CchHHHHHHHHHHHHHhCCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEE
Confidence            34455555555554322  234456778888888777321      24679999999999999999987741  357999


Q ss_pred             EeCChhHHHHH--HHHHHHhCCCC---cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccc-----------------
Q 023645          150 CERDARSLEVA--KKYYERAGVSH---KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-----------------  207 (279)
Q Consensus       150 iD~s~~~~~~a--~~~~~~~g~~~---~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~-----------------  207 (279)
                      +|+++.+++.|  +.++..+++..   ...+...|+.+.....     ..+||+|+.+++...                 
T Consensus       354 vEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~-----~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~  428 (878)
T 3s1s_A          354 NDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPED-----FANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQ  428 (878)
T ss_dssp             ECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGG-----GTTEEEEEECCBCCSSCCCHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccc-----cCCCCEEEECCCccccccchhhhhhHHHHhhh
Confidence            99999999999  55444322211   1355666665421111     468999999876310                 


Q ss_pred             ---------------hHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEE-Eee
Q 023645          208 ---------------YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS-MVP  268 (279)
Q Consensus       208 ---------------~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~lp  268 (279)
                                     +..+++.+.++|++||.+++  ++-.+-+...   ..   .-..+.++|.++..+..+ .+|
T Consensus       429 g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf--IlP~s~Lf~s---g~---~~kkLRk~LLe~~~I~aIIdLP  497 (878)
T 3s1s_A          429 LTGNRPQTLFGQIGVEALFLELVTELVQDGTVISA--IMPKQYLTAQ---GN---ESKAFREFLVGNFGLEHIFLYP  497 (878)
T ss_dssp             HHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE--EEETHHHHCC---SH---HHHHHHHHHTTTTCEEEEEECC
T ss_pred             hccccccccccccchHHHHHHHHHHhcCCCcEEEE--EEChHHhccC---Ch---HHHHHHHHHHhCCCeEEEEECC
Confidence                           23467778899999998876  2222222110   01   124455666667666543 344

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.68  E-value=7.3e-08  Score=82.84  Aligned_cols=104  Identities=12%  Similarity=-0.095  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      ++.....+...+...++.+|||||||+|..|. +.. .+ ..+|+++|+++++++.+++++...   ++++++++|+.+.
T Consensus         6 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~   79 (252)
T 1qyr_A            6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTF   79 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhC
Confidence            44444445555555667799999999999999 654 22 233999999999999999876532   3699999999874


Q ss_pred             -HHHHHhCCCCCcEEEEEEeCCccchHHHHHHH
Q 023645          184 -LKALILNGEASSYDFAFVDAEKRMYQEYFELL  215 (279)
Q Consensus       184 -l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~  215 (279)
                       ++.....  .+..|.|+.+.+..-....+..+
T Consensus        80 ~~~~~~~~--~~~~~~vvsNlPY~i~~~il~~l  110 (252)
T 1qyr_A           80 NFGELAEK--MGQPLRVFGNLPYNISTPLMFHL  110 (252)
T ss_dssp             CHHHHHHH--HTSCEEEEEECCTTTHHHHHHHH
T ss_pred             CHHHhhcc--cCCceEEEECCCCCccHHHHHHH
Confidence             3332100  02457888887754444444333

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.62  E-value=1.1e-08  Score=82.57  Aligned_cols=90  Identities=13%  Similarity=0.121  Sum_probs=68.3

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++.+|||||||.                 +++|+++.+++.|++....     +++++++|+.+....   ...+++|
T Consensus        10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~---~~~~~~f   64 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQS---AHKESSF   64 (176)
T ss_dssp             CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGG---CCCSSCE
T ss_pred             CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccc---cCCCCCE
Confidence            34678999999985                 2389999999999987532     389999999754210   0015789


Q ss_pred             EEEEEeCC---c-cchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          197 DFAFVDAE---K-RMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       197 DlI~id~~---~-~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      |+|++...   . .+....++++.++|||||.+++.+..
T Consensus        65 D~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  103 (176)
T 2ld4_A           65 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPV  103 (176)
T ss_dssp             EEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEccc
Confidence            99998643   2 56688999999999999999996543

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.52  E-value=5.6e-07  Score=77.91  Aligned_cols=83  Identities=12%  Similarity=0.079  Sum_probs=66.9

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++..+||.+||.|..|..+++.   +++|+|+|.++.+++.|++ ++.    ++++++++++.+....+...+ .++
T Consensus        19 ~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g-~~~   89 (285)
T 1wg8_A           19 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALG-VER   89 (285)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTT-CSC
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcC-CCC
Confidence            3456779999999999999999987   5899999999999999998 643    579999999987644343322 368


Q ss_pred             EEEEEEeCCccc
Q 023645          196 YDFAFVDAEKRM  207 (279)
Q Consensus       196 fDlI~id~~~~~  207 (279)
                      +|.|++|.+...
T Consensus        90 vDgIL~DLGvSS  101 (285)
T 1wg8_A           90 VDGILADLGVSS  101 (285)
T ss_dssp             EEEEEEECSCCH
T ss_pred             cCEEEeCCcccc
Confidence            999999977544

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.33  E-value=4.2e-07  Score=78.76  Aligned_cols=128  Identities=16%  Similarity=0.192  Sum_probs=92.6

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~  188 (279)
                      .++..+.. ..+..+||+-+|+|..++.+++.   ..+++.+|.++...+..++|++.   .++++++.+|+...+..+.
T Consensus        82 ~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~  154 (283)
T 2oo3_A           82 EYISVIKQ-INLNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALL  154 (283)
T ss_dssp             HHHHHHHH-HSSSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHC
T ss_pred             HHHHHHHH-hcCCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhc
Confidence            34444433 45667999999999999988773   46999999999999999998864   4579999999988877663


Q ss_pred             hCCCCCcEEEEEEeCCcc---chHHHHHHHH--ccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhh
Q 023645          189 LNGEASSYDFAFVDAEKR---MYQEYFELLL--QLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLM  257 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~~~---~~~~~l~~~~--~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~  257 (279)
                      ..  ..+||+||+|++.+   .+...++.+.  ..+.++|++++    |-..+.        ...++.|.+.+.
T Consensus       155 ~~--~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~----WYPi~~--------~~~~~~~~~~l~  214 (283)
T 2oo3_A          155 PP--PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV----WYPVVN--------KAWTEQFLRKMR  214 (283)
T ss_dssp             SC--TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE----EEEESS--------HHHHHHHHHHHH
T ss_pred             CC--CCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE----EEeccc--------hHHHHHHHHHHH
Confidence            32  24799999999854   4556665554  35678999887    543321        112456777664

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.25  E-value=6.3e-06  Score=64.20  Aligned_cols=85  Identities=15%  Similarity=0.055  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCccC-HHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          119 GAQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       119 ~~~~VLEiG~G~G-~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ++.+|||||||.| ..+..|++..  +..|+++|++|..++                +++.|.++....+     -+.||
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~----------------~v~dDiF~P~~~~-----Y~~~D   91 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG----------------IVRDDITSPRMEI-----YRGAA   91 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----------------EECCCSSSCCHHH-----HTTEE
T ss_pred             CCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----------------eEEccCCCCcccc-----cCCcC
Confidence            4579999999999 5999998753  578999999998765                7888887643322     25899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +|+.-.+.......+-.+.+  +-|.-+++.
T Consensus        92 LIYsirPP~El~~~i~~lA~--~v~adliI~  120 (153)
T 2k4m_A           92 LIYSIRPPAEIHSSLMRVAD--AVGARLIIK  120 (153)
T ss_dssp             EEEEESCCTTTHHHHHHHHH--HHTCEEEEE
T ss_pred             EEEEcCCCHHHHHHHHHHHH--HcCCCEEEE
Confidence            99665554444444444443  234555553

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.24  E-value=6.8e-06  Score=72.78  Aligned_cols=85  Identities=24%  Similarity=0.148  Sum_probs=67.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++..++|..||.|..|..+++.++++++|+|+|.++++++.|+ .+    ..++++++++++.+....+...+-.+++
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~g~~~~v  129 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAERDLIGKI  129 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHTTCTTCE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhcCCCCcc
Confidence            456789999999999999999999877899999999999999884 33    2468999999998765555433212479


Q ss_pred             EEEEEeCCcc
Q 023645          197 DFAFVDAEKR  206 (279)
Q Consensus       197 DlI~id~~~~  206 (279)
                      |.|+.|-+..
T Consensus       130 DgILfDLGVS  139 (347)
T 3tka_A          130 DGILLDLGVS  139 (347)
T ss_dssp             EEEEEECSCC
T ss_pred             cEEEECCccC
Confidence            9999987643

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.12  E-value=1.1e-05  Score=76.36  Aligned_cols=156  Identities=9%  Similarity=0.119  Sum_probs=106.6

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC------------CCEEEEEeCChhHHHHHHHHHH
Q 023645           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE------------SGCLVACERDARSLEVAKKYYE  165 (279)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~------------~~~v~~iD~s~~~~~~a~~~~~  165 (279)
                      .+..-+++....++..++....+.+|+|-.||+|.+.....+.+..            ...++|+|+++.....|+-++-
T Consensus       196 ~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~  275 (530)
T 3ufb_A          196 SGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL  275 (530)
T ss_dssp             CCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred             CceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence            3456678888899988888888889999999999998877665421            2469999999999999999988


Q ss_pred             HhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc-------------------chHHHHHHHHccCC------
Q 023645          166 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------MYQEYFELLLQLIR------  220 (279)
Q Consensus       166 ~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~-------------------~~~~~l~~~~~~Lk------  220 (279)
                      -+|... ..+.++|......  ...++..+||+|+.+++..                   ....+++.+...|+      
T Consensus       276 lhg~~~-~~I~~~dtL~~~~--~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l  352 (530)
T 3ufb_A          276 LHGLEY-PRIDPENSLRFPL--REMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGS  352 (530)
T ss_dssp             HHTCSC-CEEECSCTTCSCG--GGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSS
T ss_pred             hcCCcc-ccccccccccCch--hhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhcc
Confidence            888754 5788888764211  1111235799999987631                   12346777777776      


Q ss_pred             -CCcEEEE---eCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEE-EEee
Q 023645          221 -VGGIIVI---DNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSI-SMVP  268 (279)
Q Consensus       221 -~gG~lv~---dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~lp  268 (279)
                       +||.+.+   +.+++.+.         ..   ..+.++|.++..+++ +.||
T Consensus       353 ~~gGr~avVlP~g~Lf~~~---------~~---~~iRk~Lle~~~l~aII~LP  393 (530)
T 3ufb_A          353 DNGGRAAVVVPNGTLFSDG---------IS---ARIKEELLKNFNLHTIVRLP  393 (530)
T ss_dssp             SSCCEEEEEEEHHHHHCCT---------HH---HHHHHHHHHHSEEEEEEECC
T ss_pred             CCCceEEEEecchhhhccc---------hH---HHHHHHHhhcCEEEEEEECC
Confidence             6887655   23343332         11   234455566666665 4466

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.02  E-value=5.7e-06  Score=71.18  Aligned_cols=105  Identities=14%  Similarity=0.095  Sum_probs=63.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..+..+|||+|||+|.++..+++..+ ...++++|+.-+........ ...+. + +....+++ +.. .+    ..++|
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~-~~~g~-~-ii~~~~~~-dv~-~l----~~~~~  141 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNV-QSLGW-N-IITFKDKT-DIH-RL----EPVKC  141 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCC-CBTTG-G-GEEEECSC-CTT-TS----CCCCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCccccccc-CcCCC-C-eEEEeccc-eeh-hc----CCCCc
Confidence            34567999999999999999887643 35788888874431000000 00011 2 33345543 111 11    15789


Q ss_pred             EEEEEeCCcc----ch-----HHHHHHHHccCCCC-cEEEEeCCCC
Q 023645          197 DFAFVDAEKR----MY-----QEYFELLLQLIRVG-GIIVIDNVLW  232 (279)
Q Consensus       197 DlI~id~~~~----~~-----~~~l~~~~~~Lk~g-G~lv~dd~~~  232 (279)
                      |+|++|....    ..     ...++.+.++|+|| |.+|+. ++-
T Consensus       142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K-Vf~  186 (277)
T 3evf_A          142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK-VLA  186 (277)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE-ESC
T ss_pred             cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE-ecC
Confidence            9999997432    11     12357778999999 999994 443

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.99  E-value=1.3e-05  Score=72.12  Aligned_cols=72  Identities=7%  Similarity=0.028  Sum_probs=54.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++++|||+||++|++|..+++.   +++|++||+.+-.-     .+.   -..+|+++++|+....+.      .++|
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l~~-----~l~---~~~~V~~~~~d~~~~~~~------~~~~  271 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPMAQ-----SLM---DTGQVTWLREDGFKFRPT------RSNI  271 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCCCH-----HHH---TTTCEEEECSCTTTCCCC------SSCE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhcCh-----hhc---cCCCeEEEeCccccccCC------CCCc
Confidence            346889999999999999999886   57999999875221     111   124699999999765431      4689


Q ss_pred             EEEEEeCCc
Q 023645          197 DFAFVDAEK  205 (279)
Q Consensus       197 DlI~id~~~  205 (279)
                      |+|++|...
T Consensus       272 D~vvsDm~~  280 (375)
T 4auk_A          272 SWMVCDMVE  280 (375)
T ss_dssp             EEEEECCSS
T ss_pred             CEEEEcCCC
Confidence            999999763

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.95  E-value=3e-06  Score=72.07  Aligned_cols=96  Identities=16%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHH--CCC-CCEEEEEeC--ChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALV--LPE-SGCLVACER--DARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILN  190 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~--~~~-~~~v~~iD~--s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~  190 (279)
                      +.++.+|||+||+.|.|+.+.++.  ... .+.++++|.  .|-..       ...|+ +-++|+++ |+.+.       
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv-~~i~~~~G~Df~~~-------  135 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGW-NIVTMKSGVDVFYK-------  135 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTG-GGEEEECSCCGGGS-------
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCc-eEEEeeccCCccCC-------
Confidence            346779999999999999999986  321 245566662  22100       00121 22466667 98762       


Q ss_pred             CCCCcEEEEEEeCCccc---------hHHHHHHHHccCCCCc-EEEEe
Q 023645          191 GEASSYDFAFVDAEKRM---------YQEYFELLLQLIRVGG-IIVID  228 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~---------~~~~l~~~~~~Lk~gG-~lv~d  228 (279)
                       +..++|+|++|..+..         ....++.+.++|+||| .+++.
T Consensus       136 -~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK  182 (269)
T 2px2_A          136 -PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK  182 (269)
T ss_dssp             -CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             -CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence             1458999999964211         1225677779999999 88884

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.92  E-value=4.7e-06  Score=71.81  Aligned_cols=146  Identities=16%  Similarity=0.069  Sum_probs=82.1

Q ss_pred             ChhHHHHHHhccCC--hHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHH--hhcCCCEEEEEcCccCHHHHHHHHHCCCC
Q 023645           69 TPPLYDYILRNVRE--PEILRQLREETAGMRGSQMQVSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPES  144 (279)
Q Consensus        69 ~~~l~~Y~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~VLEiG~G~G~~t~~la~~~~~~  144 (279)
                      ..++.+|-...+.|  ...-++..+.....   .--.+...-+++...-  .+.+..+|||||||.|.++..+++..+ .
T Consensus        39 k~~f~~y~~~~i~e~~r~~ar~~l~~~~~~---g~YrSRAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~g-v  114 (282)
T 3gcz_A           39 KTQFEQYKRSCILEVDRTHARDSLENGIQN---GIAVSRGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKN-V  114 (282)
T ss_dssp             HHHHHHHHTTTCEEECCHHHHHHHHHTCCS---SBCSSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTT-E
T ss_pred             HHHHHhhhhhceeeccHHHHHHHHhcCCcC---CCEecHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC-C
Confidence            44666777766533  22333333333222   1123433333333322  235667999999999999999887554 4


Q ss_pred             CEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCCCCCcEEEEEEeCCcc----c-----hHHHHHH
Q 023645          145 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASSYDFAFVDAEKR----M-----YQEYFEL  214 (279)
Q Consensus       145 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~~~~~fDlI~id~~~~----~-----~~~~l~~  214 (279)
                      ..|+++|+...+...+... ...+. +.+.+... |..+    +    ...++|+|++|....    .     ....++.
T Consensus       115 ~sV~GvdvG~d~~~~pi~~-~~~g~-~ii~~~~~~dv~~----l----~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~  184 (282)
T 3gcz_A          115 KKVMAFTLGVQGHEKPIMR-TTLGW-NLIRFKDKTDVFN----M----EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNC  184 (282)
T ss_dssp             EEEEEECCCCTTSCCCCCC-CBTTG-GGEEEECSCCGGG----S----CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHH
T ss_pred             CeeeeEEeccCcccccccc-ccCCC-ceEEeeCCcchhh----c----CCCCcCEEEecCccCCCChHHHHHHHHHHHHH
Confidence            5789999976532211100 00111 22333322 3321    1    157899999996532    1     1234666


Q ss_pred             HHccCCCC--cEEEEe
Q 023645          215 LLQLIRVG--GIIVID  228 (279)
Q Consensus       215 ~~~~Lk~g--G~lv~d  228 (279)
                      +..+|+||  |.+|+.
T Consensus       185 A~~~Lk~g~~G~Fv~K  200 (282)
T 3gcz_A          185 AKQWLQEGNYTEFCIK  200 (282)
T ss_dssp             HHHHHHHHCCCEEEEE
T ss_pred             HHHHcCCCCCCcEEEE
Confidence            77999999  999995

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.74  E-value=0.00023  Score=61.70  Aligned_cols=152  Identities=13%  Similarity=0.072  Sum_probs=82.6

Q ss_pred             cCCC-ChhHHHHHHhccCC--hHHHHHHHHHHHccCCCCCCCCHHH-HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHH
Q 023645           65 VISV-TPPLYDYILRNVRE--PEILRQLREETAGMRGSQMQVSPDQ-AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV  140 (279)
Q Consensus        65 ~~~~-~~~l~~Y~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~  140 (279)
                      ...+ ..++.+|-...+.|  ...-++..+......+....-+..+ .++... --..++++|||+||++|.|+..+++.
T Consensus        24 Ln~l~k~~f~~y~~~~i~e~dr~~ar~~l~~~~~~~g~yrSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~  102 (300)
T 3eld_A           24 LNMLGKQEFERYKVSDITEVDRTAARRYLKEGRTDVGISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQ  102 (300)
T ss_dssp             HTTSCHHHHHHHHHTTCEEECCHHHHHHHHHTCSSSCCCSSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTS
T ss_pred             HHhhhHHHHHhhhhhccccccHHHHHHHHHcCCccCCCccchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHh
Confidence            3344 45677888776533  2233333333322112222222222 222223 22345679999999999999999976


Q ss_pred             CCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCCCCCcEEEEEEeCCcc----c-----hHH
Q 023645          141 LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASSYDFAFVDAEKR----M-----YQE  210 (279)
Q Consensus       141 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~~~~~fDlI~id~~~~----~-----~~~  210 (279)
                      .+ ...|+++|+.......... ....+. +.+.+..+ |+..    +    ..+++|+|++|....    .     ...
T Consensus       103 ~g-v~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~----l----~~~~~DlVlsD~APnsG~~~~D~~rs~~  171 (300)
T 3eld_A          103 KE-VMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFT----M----PTEPSDTLLCDIGESSSNPLVERDRTMK  171 (300)
T ss_dssp             TT-EEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTT----S----CCCCCSEEEECCCCCCSSHHHHHHHHHH
T ss_pred             cC-CceeeeEEecccccccccc-ccccCC-ceEEeecCceeee----c----CCCCcCEEeecCcCCCCCHHHHHHHHHH
Confidence            43 3578899997542100000 000011 12333322 2221    1    147899999996533    1     123


Q ss_pred             HHHHHHccCCCC-cEEEEe
Q 023645          211 YFELLLQLIRVG-GIIVID  228 (279)
Q Consensus       211 ~l~~~~~~Lk~g-G~lv~d  228 (279)
                      .++.+..+|+|| |.+|+.
T Consensus       172 LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          172 VLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             HHHHHHHHCCTTCCEEEEE
T ss_pred             HHHHHHHHhcCCCCcEEEE
Confidence            466677999999 999996

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.72  E-value=0.00019  Score=60.26  Aligned_cols=99  Identities=14%  Similarity=0.074  Sum_probs=68.4

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCCCCCc
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASS  195 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~~~~~  195 (279)
                      +.+..+|||+||++|.++.+++...+ ..+|+++|+-..-.+. -..++..|++ .++|+.+ |+... +       ..+
T Consensus        76 l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~-P~~~~s~gwn-~v~fk~gvDv~~~-~-------~~~  144 (267)
T 3p8z_A           76 VIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEE-PVPMSTYGWN-IVKLMSGKDVFYL-P-------PEK  144 (267)
T ss_dssp             SCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC-CCCCCCTTTT-SEEEECSCCGGGC-C-------CCC
T ss_pred             CCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccC-cchhhhcCcC-ceEEEeccceeec-C-------Ccc
Confidence            45677999999999999998887654 3489999997643210 0011233444 5999999 87432 2       467


Q ss_pred             EEEEEEeCCcc---------chHHHHHHHHccCCCCcEEEE
Q 023645          196 YDFAFVDAEKR---------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       196 fDlI~id~~~~---------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +|.|++|....         .....++.+.++|++ |-+++
T Consensus       145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~  184 (267)
T 3p8z_A          145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI  184 (267)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred             ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence            99999996521         123367777799998 67777

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.67  E-value=0.00022  Score=62.35  Aligned_cols=51  Identities=18%  Similarity=0.090  Sum_probs=43.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH  171 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~  171 (279)
                      .++..|||++||+|..++.+++.   +.+++|+|+++++++.|+++++......
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~~~~  284 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREVPGF  284 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHSTTC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhcccc
Confidence            46789999999999999987764   4699999999999999999998764433

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.65  E-value=0.00023  Score=62.36  Aligned_cols=136  Identities=18%  Similarity=0.146  Sum_probs=82.0

Q ss_pred             CCEEEEEcCccCHHHHHHHH---HCCCCC--EEEEEeCCh--------h-HHHHHHHHHHHhCC--CC--cEEEEEcChh
Q 023645          120 AQRCIEVGVYTGYSSLAIAL---VLPESG--CLVACERDA--------R-SLEVAKKYYERAGV--SH--KVKIKHGLAA  181 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~---~~~~~~--~v~~iD~s~--------~-~~~~a~~~~~~~g~--~~--~v~~~~gd~~  181 (279)
                      .-+|||+|-|+|...+....   ...+..  +++++|..+        + ..+..+..+.....  ..  .+++..||+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            34899999999997654332   122244  567777532        1 22233333332110  12  2567889998


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCC--c----cchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHH
Q 023645          182 DSLKALILNGEASSYDFAFVDAE--K----RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKN  255 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~--~----~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~  255 (279)
                      +.++.+    +..+||+||.|+-  .    -...++|+.+.++++|||+++--  .-.|                 +.+.
T Consensus       177 ~~l~~l----~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTY--taag-----------------~VRR  233 (308)
T 3vyw_A          177 KRIKEV----ENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSY--SSSL-----------------SVRK  233 (308)
T ss_dssp             HHGGGC----CSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEES--CCCH-----------------HHHH
T ss_pred             HHHhhh----cccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEE--eCcH-----------------HHHH
Confidence            887765    1358999999973  1    13468999999999999999852  2222                 2333


Q ss_pred             hhhCCCeEEEEee-cC--CceEEEEE
Q 023645          256 LMEDERVSISMVP-IG--DGMTICQK  278 (279)
Q Consensus       256 l~~~~~~~~~~lp-~~--~G~~i~~~  278 (279)
                      -...-+|++.-.| +|  ..+++|.+
T Consensus       234 ~L~~aGF~V~k~~G~g~KReml~A~~  259 (308)
T 3vyw_A          234 SLLTLGFKVGSSREIGRKRKGTVASL  259 (308)
T ss_dssp             HHHHTTCEEEEEECC---CEEEEEES
T ss_pred             HHHHCCCEEEecCCCCCCCceeEEec
Confidence            3355677777766 32  35555543

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.63  E-value=0.00019  Score=64.38  Aligned_cols=59  Identities=8%  Similarity=-0.010  Sum_probs=49.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      ...|||||.|.|.+|..|++... ..+|+++|+++..+...++.+ .   .++++++++|+.++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccch
Confidence            47899999999999999998632 358999999999998888766 2   25799999999765

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.61  E-value=0.00012  Score=63.28  Aligned_cols=145  Identities=15%  Similarity=0.129  Sum_probs=83.3

Q ss_pred             hHHHHHHhccCC--hHHHHHHHHHHHccCCCCCCCCHHHHHHHHHH--HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCE
Q 023645           71 PLYDYILRNVRE--PEILRQLREETAGMRGSQMQVSPDQAQLLAML--VQILGAQRCIEVGVYTGYSSLAIALVLPESGC  146 (279)
Q Consensus        71 ~l~~Y~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~  146 (279)
                      +...|=.+.+.|  ....++.........+.  ..+....++....  -.+.+..+||||||++|.++.+++...+ ..+
T Consensus        44 ~F~~Yk~~gi~Evdr~~ar~~l~~g~~~~g~--y~SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~g-v~~  120 (321)
T 3lkz_A           44 EFTRYRKEAIIEVDRSAAKHARKEGNVTGGH--PVSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKR-VQE  120 (321)
T ss_dssp             HHHHHTTTTCEEECCHHHHHHHHHTCCSSCC--CSSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTT-EEE
T ss_pred             HHHHHhhcCceeechHHHHHHHhcCcCcCCC--ccchHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcC-CCE
Confidence            445665555433  22333333333222222  2343333333322  2245667999999999999998887654 347


Q ss_pred             EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCCCCCcEEEEEEeCCcc---------chHHHHHHHH
Q 023645          147 LVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASSYDFAFVDAEKR---------MYQEYFELLL  216 (279)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~~~~~fDlI~id~~~~---------~~~~~l~~~~  216 (279)
                      |+|+|+-..-.+.- ..++..+.+ -|.++.+ |+... +       ..++|+|++|....         .....|+.+.
T Consensus       121 V~avdvG~~~he~P-~~~~ql~w~-lV~~~~~~Dv~~l-~-------~~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~  190 (321)
T 3lkz_A          121 VRGYTKGGPGHEEP-QLVQSYGWN-IVTMKSGVDVFYR-P-------SECCDTLLCDIGESSSSAEVEEHRTIRVLEMVE  190 (321)
T ss_dssp             EEEECCCSTTSCCC-CCCCBTTGG-GEEEECSCCTTSS-C-------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCccCc-chhhhcCCc-ceEEEeccCHhhC-C-------CCCCCEEEEECccCCCChhhhhhHHHHHHHHHH
Confidence            99999976521000 000122222 3888888 76432 2       36799999996511         1233667777


Q ss_pred             ccCCCC-cEEEEe
Q 023645          217 QLIRVG-GIIVID  228 (279)
Q Consensus       217 ~~Lk~g-G~lv~d  228 (279)
                      ++|++| |-+++.
T Consensus       191 ~wL~~~~~~f~~K  203 (321)
T 3lkz_A          191 DWLHRGPREFCVK  203 (321)
T ss_dssp             HHHTTCCCEEEEE
T ss_pred             HHhccCCCcEEEE
Confidence            889998 888883

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.59  E-value=2.5e-05  Score=76.23  Aligned_cols=108  Identities=17%  Similarity=0.154  Sum_probs=73.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC-------CC----CCEEEEEeCChhHHHHHHH--------------HHHHh-----C-
Q 023645          120 AQRCIEVGVYTGYSSLAIALVL-------PE----SGCLVACERDARSLEVAKK--------------YYERA-----G-  168 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~-------~~----~~~v~~iD~s~~~~~~a~~--------------~~~~~-----g-  168 (279)
                      .-+|+|+|.|+|+..+.+.+.+       |.    ..+++++|..|-..+.+++              .++..     | 
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            4589999999999988876653       11    1579999996644433333              22221     1 


Q ss_pred             ----CCC---cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccc------hHHHHHHHHccCCCCcEEEEe
Q 023645          169 ----VSH---KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       169 ----~~~---~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                          +.+   .+++..||+.+.++.+.... ...+|.+|+|+....      ..++|..+.+++++||.+.-.
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~-~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  210 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSL-NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF  210 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGG-TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhccccc-CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence                111   46789999998887652110 368999999975322      478899999999999998764

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.50  E-value=0.00022  Score=61.74  Aligned_cols=93  Identities=18%  Similarity=0.232  Sum_probs=63.3

Q ss_pred             CCCEEEEEcC------ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          119 GAQRCIEVGV------YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       119 ~~~~VLEiG~------G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .+.+|||+|+      ..|.+  .+.+..|.++.|+++|+.+-..           ..+  .+++||..+...       
T Consensus       109 ~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------da~--~~IqGD~~~~~~-------  166 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------DAD--STLIGDCATVHT-------  166 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------SSS--EEEESCGGGEEE-------
T ss_pred             CCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------CCC--eEEEcccccccc-------
Confidence            4679999996      56763  4445566457999999987421           112  458999754211       


Q ss_pred             CCcEEEEEEeCCc--------c------chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          193 ASSYDFAFVDAEK--------R------MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       193 ~~~fDlI~id~~~--------~------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      .++||+|++|...        .      -.+..++.+.+.|+|||.+++.  ++.|.
T Consensus       167 ~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK--VFQGs  221 (344)
T 3r24_A          167 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK--ITEHS  221 (344)
T ss_dssp             SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE--ECSSS
T ss_pred             CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE--EecCC
Confidence            4789999998531        0      1345667778999999999997  34443

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.12  E-value=0.0016  Score=63.17  Aligned_cols=108  Identities=19%  Similarity=0.186  Sum_probs=71.7

Q ss_pred             CEEEEEcCccCHHHHHHHHHC-------CC----CCEEEEEeC---ChhHHHH-----------HHHHHHHhCC------
Q 023645          121 QRCIEVGVYTGYSSLAIALVL-------PE----SGCLVACER---DARSLEV-----------AKKYYERAGV------  169 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~-------~~----~~~v~~iD~---s~~~~~~-----------a~~~~~~~g~------  169 (279)
                      -+|+|+|.|+|...+...+.+       |.    .-+++++|.   +++.+..           +++..+....      
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            489999999999887766543       11    246999999   4444432           2232222211      


Q ss_pred             -------CCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC------ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          170 -------SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       170 -------~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                             .-.+++..||+.+.++.+.... ...||++|.|+-      .-...++|..+.++++|||.+....
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~-~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDSL-NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT  219 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGGG-TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhccccc-CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence                   0235678899988877652110 367999999974      1225678999999999999988643

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.12  E-value=0.0024  Score=57.65  Aligned_cols=37  Identities=11%  Similarity=0.190  Sum_probs=26.7

Q ss_pred             CCEEEEEcCccCHHHHHHHHH--------C------CCCCEEEEEeCChhH
Q 023645          120 AQRCIEVGVYTGYSSLAIALV--------L------PESGCLVACERDARS  156 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~--------~------~~~~~v~~iD~s~~~  156 (279)
                      +.+|+|+||++|..|+.+...        .      ++..+|+.-|+-..-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~ND  103 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSND  103 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccc
Confidence            468999999999999987331        1      235678888875544

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.10  E-value=0.00086  Score=60.72  Aligned_cols=78  Identities=8%  Similarity=-0.009  Sum_probs=45.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHH-------------C---CCCCEEEEEeCC-----------hhHHHHHHHHHHHhCCCCc
Q 023645          120 AQRCIEVGVYTGYSSLAIALV-------------L---PESGCLVACERD-----------ARSLEVAKKYYERAGVSHK  172 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~-------------~---~~~~~v~~iD~s-----------~~~~~~a~~~~~~~g~~~~  172 (279)
                      +.+|+|+||++|..|+.+...             .   ++..+|+.-|+.           +.+.+.++   +..|...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence            468999999999999988765             1   124578888876           33222221   12232112


Q ss_pred             EEEEEcChhhHHHHHHhCCCCCcEEEEEEeC
Q 023645          173 VKIKHGLAADSLKALILNGEASSYDFAFVDA  203 (279)
Q Consensus       173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~  203 (279)
                      ..|+.|..-.+...+.   .+++||+|+...
T Consensus       130 ~~f~~gvpgSFy~rlf---p~~S~d~v~Ss~  157 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLF---PEESMHFLHSCY  157 (384)
T ss_dssp             SEEEEECCSCTTSCCS---CTTCEEEEEEES
T ss_pred             ceEEEecchhhhhccC---CCCceEEEEecc
Confidence            3555554433222111   168999999864

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.00  E-value=0.0015  Score=55.89  Aligned_cols=48  Identities=8%  Similarity=0.149  Sum_probs=40.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG  168 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g  168 (279)
                      .++..|||.+||+|..+....+.   +-+++|+|+++..++.++++++.++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            46779999999999998887764   4699999999999999999998654

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.91  E-value=0.0022  Score=58.58  Aligned_cols=60  Identities=12%  Similarity=0.149  Sum_probs=47.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHH-HHCCCCCEEEEEeCChhHHHHHHHHHHH--hCCC-CcEEEEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIA-LVLPESGCLVACERDARSLEVAKKYYER--AGVS-HKVKIKH  177 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la-~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g~~-~~v~~~~  177 (279)
                      .++..|+|||++.|..+..++ +..++.++|+++|++|...+..+++++.  ++.. ++++++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~  288 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG  288 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEE
Confidence            567899999999999999988 5555348999999999999999999987  2222 4455543

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.91  E-value=0.0033  Score=56.81  Aligned_cols=101  Identities=14%  Similarity=0.032  Sum_probs=67.7

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHH-hC-CCCCcEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI-LN-GEASSYDF  198 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~-~~-~~~~~fDl  198 (279)
                      .+++|+.||.|..++.+.++-  -..+.++|+++.+.+..+.|+.      ...++++|+.+...... .. .....+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            489999999999999988762  1357799999999888777653      35778899876532211 00 01367999


Q ss_pred             EEEeCCccc----------------hHHHHHHHHccCCCCcEEEEeCCC
Q 023645          199 AFVDAEKRM----------------YQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       199 I~id~~~~~----------------~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      |+.+.+...                +..++ .+...++|. ++++.||-
T Consensus        75 i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~-~~v~~~~P~-~~v~ENV~  121 (376)
T 3g7u_A           75 IIGGPPCQGFSSIGKGNPDDSRNQLYMHFY-RLVSELQPL-FFLAENVP  121 (376)
T ss_dssp             EEECCCCCTTC-------CHHHHHHHHHHH-HHHHHHCCS-EEEEEECT
T ss_pred             EEecCCCCCcccccCCCCCCchHHHHHHHH-HHHHHhCCC-EEEEecch
Confidence            998765111                12222 334566885 78888874

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.89  E-value=0.0039  Score=55.15  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=68.3

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++++||-+|+|. |..+..+++..  +.+|+++|.+++..+.+++    .|...-+.....+..+.+...     .+
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~-----~g  231 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKE-----IG  231 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH-----HS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHh-----CC
Confidence            455778999999875 78888888876  4699999999988877654    454321111112333333322     24


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .+|.||.....   ...++.+.+.|++||.++.-..
T Consensus       232 ~~d~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          232 GAHGVLVTAVS---PKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             SEEEEEESSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCEEEEeCCC---HHHHHHHHHHhccCCEEEEeCC
Confidence            79999866442   3567788899999999987543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.88  E-value=0.0028  Score=56.79  Aligned_cols=103  Identities=20%  Similarity=0.277  Sum_probs=67.0

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....+..+.+....    .+
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~~----~g  257 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEIT----DG  257 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCCEEecCCccCHHHHHHHhc----CC
Confidence            445678999999875 777778887763 2279999999988887754    3432111111123333333321    23


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .+|+||-....   ...++.+.+.|++||.+++-..
T Consensus       258 g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          258 GVNFALESTGS---PEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             CEEEEEECSCC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCcEEEECCCC---HHHHHHHHHHHhcCCEEEEeCC
Confidence            79999865442   2457888999999999987543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.86  E-value=0.0018  Score=52.51  Aligned_cols=101  Identities=15%  Similarity=0.161  Sum_probs=61.2

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++++||.+|+  |.|..+..++...  +++|+++|.+++..+.+++    .|....+.....+..+.+....   ..
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~---~~  105 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELT---DG  105 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHT---TT
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEeeCCcHHHHHHHHHHh---CC
Confidence            3456789999994  4455555555544  4799999999887665543    3432111111112222222221   12


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+|+++.....    ..++.+.+.|++||.++.-.
T Consensus       106 ~~~D~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          106 YGVDVVLNSLAG----EAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             CCEEEEEECCCT----HHHHHHHHTEEEEEEEEECS
T ss_pred             CCCeEEEECCch----HHHHHHHHHhccCCEEEEEc
Confidence            469999866542    46788889999999998743

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.86  E-value=0.0022  Score=57.19  Aligned_cols=76  Identities=13%  Similarity=0.054  Sum_probs=55.3

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      +.+|+|+.||.|..++.+.++.-.-..+.++|+++.+++..+.|+..      ..++++|+.+.......   ...+|+|
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~---~~~~D~l   72 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFD---RLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHH---HHCCSEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcC---cCCcCEE
Confidence            35899999999999999987621013699999999999988888742      34678888765432111   1268999


Q ss_pred             EEeCC
Q 023645          200 FVDAE  204 (279)
Q Consensus       200 ~id~~  204 (279)
                      +.+.+
T Consensus        73 ~~gpP   77 (343)
T 1g55_A           73 LMSPP   77 (343)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            98765

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.70  E-value=0.0043  Score=56.24  Aligned_cols=108  Identities=16%  Similarity=0.290  Sum_probs=69.2

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh-hhHHHHHHhCC
Q 023645          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNG  191 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~-~~~l~~~~~~~  191 (279)
                      .+...++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|. +-+.....+. .+.+....   
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~~~~~~---  250 (398)
T 2dph_A          180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSD----AGF-ETIDLRNSAPLRDQIDQIL---  250 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHT----TTC-EEEETTSSSCHHHHHHHHH---
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCC-cEEcCCCcchHHHHHHHHh---
Confidence            34556788999999875 777888888764 2399999999988777653    343 1121112232 33333321   


Q ss_pred             CCCcEEEEEEeCCccc-----------hHHHHHHHHccCCCCcEEEEeCC
Q 023645          192 EASSYDFAFVDAEKRM-----------YQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~-----------~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +...+|+||-......           ....++.+.+.|++||.+++-..
T Consensus       251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence            1237999986544321           13467888999999999986443

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.52  E-value=0.012  Score=52.26  Aligned_cols=102  Identities=14%  Similarity=0.130  Sum_probs=66.5

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC---hhhHHHHHHh
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGL---AADSLKALIL  189 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd---~~~~l~~~~~  189 (279)
                      ....++.+||-+|+|. |..+..+++..+  + +|+++|.+++..+.+++    .|..   .++..+   ..+....+..
T Consensus       167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~  237 (356)
T 1pl8_A          167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEG  237 (356)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHH
Confidence            4456788999999874 777777888764  5 99999999988777654    4543   222222   1222222211


Q ss_pred             CCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       190 ~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .. ...+|+||-....   ...++.+.+.|++||.++.-.
T Consensus       238 ~~-~~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          238 QL-GCKPEVTIECTGA---EASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HH-TSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred             Hh-CCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEEe
Confidence            11 2569999865443   245677889999999998744

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.50  E-value=0.00052  Score=61.62  Aligned_cols=108  Identities=10%  Similarity=0.058  Sum_probs=65.1

Q ss_pred             CCEEEEEcCccCHHHHHHHHH---------------CCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH
Q 023645          120 AQRCIEVGVYTGYSSLAIALV---------------LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~---------------~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (279)
                      +.+|+|+||++|..|+.+...               -++..+|+..|+.......+-+.+.......+..|+.|..-.+.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            347999999999988876554               13356899999877666555444332110012344444332211


Q ss_pred             HHHHhCCCCCcEEEEEEeCCcc------------------------------------chHHHHHHHHccCCCCcEEEEe
Q 023645          185 KALILNGEASSYDFAFVDAEKR------------------------------------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       185 ~~~~~~~~~~~fDlI~id~~~~------------------------------------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..+.   .++++|+|+.....+                                    +...+|+.-.+.|+|||.+++.
T Consensus       132 ~rlf---p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          132 GRLF---PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             SCCS---CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hccC---CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            1111   158999999764200                                    1233466668999999999986


Q ss_pred             CC
Q 023645          229 NV  230 (279)
Q Consensus       229 d~  230 (279)
                      -.
T Consensus       209 ~~  210 (359)
T 1m6e_X          209 IL  210 (359)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.41  E-value=0.0092  Score=52.80  Aligned_cols=95  Identities=15%  Similarity=0.134  Sum_probs=65.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      ..+++|+.||.|..++.+.++-  -..+.++|+++.+.+..+.++...     .   ++|+.+.....     -..+|+|
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~-----~~~~D~l   75 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKT-----IPDHDIL   75 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGG-----SCCCSEE
T ss_pred             CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhh-----CCCCCEE
Confidence            4689999999999999988752  236889999999999988887421     1   57877653322     2469999


Q ss_pred             EEeCCc------------cc-----hHHHHHHHHccCCCCcEEEEeCCC
Q 023645          200 FVDAEK------------RM-----YQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       200 ~id~~~------------~~-----~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +.+.+.            .+     +..+++ +...++|. ++++.||-
T Consensus        76 ~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r-~i~~~~P~-~~~~ENV~  122 (327)
T 2c7p_A           76 CAGFPCQAFSISGKQKGFEDSRGTLFFDIAR-IVREKKPK-VVFMENVK  122 (327)
T ss_dssp             EEECCCTTTCTTSCCCGGGSTTSCHHHHHHH-HHHHHCCS-EEEEEEEG
T ss_pred             EECCCCCCcchhcccCCCcchhhHHHHHHHH-HHHhccCc-EEEEeCcH
Confidence            987541            11     223333 34556885 88888874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.32  E-value=0.0076  Score=54.06  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=68.0

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .....++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....|..+.+....... 
T Consensus       177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~~-  250 (370)
T 4ej6_A          177 LSGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGLV-  250 (370)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSSS-
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhcc-
Confidence            34456788999999864 667777888764 2399999999988877765    3543211111223322222100011 


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .+.+|+||-....   ...++.+.+.|++||.+++-..
T Consensus       251 ~gg~Dvvid~~G~---~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          251 PGGVDVVIECAGV---AETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TTCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEEec
Confidence            2489999865432   3467788899999999988544

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.32  E-value=0.02  Score=51.72  Aligned_cols=107  Identities=19%  Similarity=0.204  Sum_probs=68.4

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC-hhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd-~~~~l~~~~~~~~  192 (279)
                      ....++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|.. -+.....+ ..+.+....   .
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~----lGa~-~i~~~~~~~~~~~v~~~t---~  251 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA----QGFE-IADLSLDTPLHEQIAALL---G  251 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCE-EEETTSSSCHHHHHHHHH---S
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH----cCCc-EEccCCcchHHHHHHHHh---C
Confidence            4556788999999865 777788888764 2389999999988877754    3541 11111112 223333321   1


Q ss_pred             CCcEEEEEEeCCccc------------hHHHHHHHHccCCCCcEEEEeCC
Q 023645          193 ASSYDFAFVDAEKRM------------YQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       193 ~~~fDlI~id~~~~~------------~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ...+|+||-......            ....++.+.+.|++||.+++-..
T Consensus       252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            247999986544221            23467888999999999987544

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.28  E-value=0.0098  Score=52.32  Aligned_cols=98  Identities=17%  Similarity=0.216  Sum_probs=63.3

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE---cChhhHHHHHHhC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH---GLAADSLKALILN  190 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~---gd~~~~l~~~~~~  190 (279)
                      ...++++||-.|+  |.|..+..++...  +++|+++|.+++..+.+++    .|..  ..+-.   .+..+.+....  
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~~~--  211 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFD--AAFNYKTVNSLEEALKKAS--  211 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS--EEEETTSCSCHHHHHHHHC--
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCc--EEEecCCHHHHHHHHHHHh--
Confidence            3456789999997  4566666666654  4799999999887766633    3432  22211   22222333221  


Q ss_pred             CCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                        .+.+|++|.....    ..++.+.+.|++||.+++-.
T Consensus       212 --~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          212 --PDGYDCYFDNVGG----EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             --TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             --CCCCeEEEECCCh----HHHHHHHHHHhcCCEEEEEe
Confidence              2579999876653    34778889999999998743

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.27  E-value=0.11  Score=45.36  Aligned_cols=110  Identities=12%  Similarity=0.083  Sum_probs=73.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--CCCcEEEEEcChhh-HHHHHHhCC-CCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHGLAAD-SLKALILNG-EAS  194 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~v~~~~gd~~~-~l~~~~~~~-~~~  194 (279)
                      ....||+||||.=.-...+.  .+.+.+++=+| .|+.++..++.+...+  ...+..++.+|..+ ++..+...+ +..
T Consensus       102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            45689999997554433222  24357999999 5999999999997654  34568899999875 333333222 223


Q ss_pred             cEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       195 ~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ..=++++-+.     .+.....++.+...+.||+.|+++-+.
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            3334444443     344567788888888999999998764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.25  E-value=0.0096  Score=52.88  Aligned_cols=106  Identities=19%  Similarity=0.211  Sum_probs=67.2

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .....++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....+..+.+...   .+
T Consensus       161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~---t~  232 (352)
T 3fpc_A          161 LANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALE----YGATDIINYKNGDIVEQILKA---TD  232 (352)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHH----HTCCEEECGGGSCHHHHHHHH---TT
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCceEEcCCCcCHHHHHHHH---cC
Confidence            34456788999999864 667777777653 2289999999988777765    344321111122333333322   11


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ...+|+||-.....   ..++.+.+.|++||.++.-..
T Consensus       233 g~g~D~v~d~~g~~---~~~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          233 GKGVDKVVIAGGDV---HTFAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             TCCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCEEEECCCCh---HHHHHHHHHHhcCCEEEEecc
Confidence            34799998544332   356778899999999987544

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.24  E-value=0.016  Score=51.78  Aligned_cols=102  Identities=12%  Similarity=0.149  Sum_probs=66.6

Q ss_pred             HHhhcCCCEEEEEc--CccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645          114 LVQILGAQRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       114 l~~~~~~~~VLEiG--~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      .....++++||-+|  .|.|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+...   .
T Consensus       158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~---~  228 (362)
T 2c0c_A          158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS----LGCDRPINYKTEPVGTVLKQE---Y  228 (362)
T ss_dssp             HTCCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH---C
T ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH----cCCcEEEecCChhHHHHHHHh---c
Confidence            34456788999999  45677778888776  4799999999888777654    343211111112222223222   1


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                       ...+|+||-....    ..++.+.+.|+++|.++.-.
T Consensus       229 -~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          229 -PEGVDVVYESVGG----AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             -TTCEEEEEECSCT----HHHHHHHHHEEEEEEEEECC
T ss_pred             -CCCCCEEEECCCH----HHHHHHHHHHhcCCEEEEEe
Confidence             3579999866543    46778889999999988743

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.23  E-value=0.016  Score=51.29  Aligned_cols=103  Identities=20%  Similarity=0.248  Sum_probs=68.3

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++.+||-+|+|. |..+..+++... +.+|+++|.+++..+.+++    .|...-+.. ..+..+.+.....   ..
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~----lGa~~~i~~-~~~~~~~v~~~t~---g~  238 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE----VGADAAVKS-GAGAADAIRELTG---GQ  238 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-STTHHHHHHHHHG---GG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcC-CCcHHHHHHHHhC---CC
Confidence            456788999999864 677777887764 5799999999998877754    454321111 1223333333211   24


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .+|+||-....   ...++.+.+.|++||.++.-..
T Consensus       239 g~d~v~d~~G~---~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          239 GATAVFDFVGA---QSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             CEEEEEESSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCeEEEECCCC---HHHHHHHHHHHhcCCEEEEECC
Confidence            79999865443   2467788899999999987543

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.21  E-value=0.0095  Score=52.47  Aligned_cols=103  Identities=18%  Similarity=0.141  Sum_probs=66.4

Q ss_pred             HHhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645          114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       114 l~~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      .....++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+.+   ..|...-+.....+..+.+....   
T Consensus       144 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~---  215 (336)
T 4b7c_A          144 VGQPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVE---ELGFDGAIDYKNEDLAAGLKREC---  215 (336)
T ss_dssp             TTCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TTCCSEEEETTTSCHHHHHHHHC---
T ss_pred             hcCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCCEEEECCCHHHHHHHHHhc---
Confidence            344567889999998  4566777777765  4799999999987766632   23442111111122323333221   


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                       .+.+|+||-....    ..++.+.+.|++||.++.-.
T Consensus       216 -~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          216 -PKGIDVFFDNVGG----EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             -TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             -CCCceEEEECCCc----chHHHHHHHHhhCCEEEEEe
Confidence             3579999876553    46788899999999998743

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.16  E-value=0.029  Score=49.69  Aligned_cols=106  Identities=17%  Similarity=0.235  Sum_probs=66.1

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE-cChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~~~~~~~  192 (279)
                      ....++++||-+|+|. |..+..+++..  +++|+++|.+++..+.+++    .|...-+.... .+..+.+.....+..
T Consensus       164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          164 AGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhcccc
Confidence            4456788999999864 66677778776  4689999999988877654    45432111111 233233322211000


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ...+|+||-....   ...++.+.+.|++||.++.-.
T Consensus       238 g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          238 GDLPNVTIDCSGN---EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             SSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence            1469999865443   235677889999999998743

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.15  E-value=0.054  Score=47.70  Aligned_cols=105  Identities=17%  Similarity=0.118  Sum_probs=68.3

Q ss_pred             HhhcCCCEEEEEcCccC-HHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          115 VQILGAQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G-~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ....++++||-+|+|.+ ..+..+++... +.+|+++|.+++..+.+++    .|-..-+.....|..+.+....   ..
T Consensus       159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t---~g  230 (348)
T 4eez_A          159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT---GG  230 (348)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT---TS
T ss_pred             cCCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc---CC
Confidence            34557789999999764 45555565554 6799999999987766554    4443333444445544444332   13


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ..+|.++.+...   ...+....+.|+++|.+++-..
T Consensus       231 ~g~d~~~~~~~~---~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          231 LGVQSAIVCAVA---RIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             SCEEEEEECCSC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCceEEEEeccC---cchhheeheeecCCceEEEEec
Confidence            468888876543   2457788899999999987543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.14  E-value=0.0083  Score=53.62  Aligned_cols=101  Identities=18%  Similarity=0.114  Sum_probs=67.1

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc---ChhhHHHHHHhC
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG---LAADSLKALILN  190 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g---d~~~~l~~~~~~  190 (279)
                      ....++++||-+|+|. |..+..+++..  +++|+++|.+++..+.+++    .|...   ++..   +..+.+....  
T Consensus       185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~~v~~~~--  253 (363)
T 3uog_A          185 GHLRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA----LGADH---GINRLEEDWVERVYALT--  253 (363)
T ss_dssp             TCCCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCSE---EEETTTSCHHHHHHHHH--
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH----cCCCE---EEcCCcccHHHHHHHHh--
Confidence            3445678999999774 66777778776  4799999999988877654    35432   2222   2223333321  


Q ss_pred             CCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                       +...+|+||-....    ..++.+.+.|++||.+++-...
T Consensus       254 -~g~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          254 -GDRGADHILEIAGG----AGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             -TTCCEEEEEEETTS----SCHHHHHHHEEEEEEEEEECCC
T ss_pred             -CCCCceEEEECCCh----HHHHHHHHHhhcCCEEEEEecC
Confidence             13479999876653    2366778899999999875443

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.13  E-value=0.024  Score=50.70  Aligned_cols=102  Identities=16%  Similarity=0.193  Sum_probs=65.5

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE--cChhhHHHHHHhCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG  191 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~~~~~~  191 (279)
                      ...++++||-+|+|. |..+..+++..+  + +|+++|.+++..+.+++    .|...-+....  .+..+.+....   
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~---  259 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAG--AKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKMT---  259 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHHH---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHH----hCCceEEeccccchhHHHHHHHHh---
Confidence            445678999999764 666777787764  5 89999999998887754    35431111110  12222333221   


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~  230 (279)
                       .+.+|+||-....   ...++.+.+.|++| |.++.-..
T Consensus       260 -~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          260 -NGGVDFSLECVGN---VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             -TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             -CCCCCEEEECCCC---HHHHHHHHHHhhcCCcEEEEEcC
Confidence             2479999865443   24577889999999 99987443

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.08  E-value=0.0034  Score=69.35  Aligned_cols=103  Identities=16%  Similarity=0.133  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC----CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPE----SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      +..+|||||.|+|..+..+...+..    ..+++..|+++...+.|++.++...    ++...-|..+..+.     ...
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~-----~~~ 1310 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPG-----SLG 1310 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC---------
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccC-----CCC
Confidence            3569999999999988877776642    2378999999999888888876532    22211121110000     135


Q ss_pred             cEEEEEEeCCc---cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAEK---RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~~---~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .||+|+.....   .+....+..+.++|||||.+++..+
T Consensus      1311 ~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1311 KADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             -CCEEEEECC--------------------CCEEEEEEC
T ss_pred             ceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            79999976542   3455678889999999999998764

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.06  E-value=0.025  Score=50.65  Aligned_cols=102  Identities=15%  Similarity=0.236  Sum_probs=65.5

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE--cChhhHHHHHHhCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG  191 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~~~~~~  191 (279)
                      ...++++||-+|+|. |..+..+++..+  + +|+++|.+++..+.+++    .|...-+....  .+..+.+....   
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~v~~~~---  262 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAG--ASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT---  262 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH----hCCcEEEccccccchHHHHHHHHh---
Confidence            345678999999763 666777787764  5 89999999998877754    45431111110  12333333321   


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~  230 (279)
                       .+.+|+||-....   ...++.+.+.|++| |.+++-..
T Consensus       263 -~~g~Dvvid~~G~---~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          263 -AGGVDYSLDCAGT---AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             -TSCBSEEEESSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             -CCCccEEEECCCC---HHHHHHHHHHhhcCCCEEEEECC
Confidence             2479999865432   34577889999999 99987443

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.05  E-value=0.0084  Score=52.99  Aligned_cols=103  Identities=13%  Similarity=0.061  Sum_probs=65.2

Q ss_pred             HhhcCCCEEEEEcCc--cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      +...++++||-+|+|  .|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+...   ..
T Consensus       140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lga~~~~~~~~~~~~~~~~~~---~~  210 (340)
T 3gms_A          140 LNLQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLR----LGAAYVIDTSTAPLYETVMEL---TN  210 (340)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSEEEETTTSCHHHHHHHH---TT
T ss_pred             cccCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----CCCcEEEeCCcccHHHHHHHH---hC
Confidence            345577899999986  566777777765  4799999999998887765    343321111112222222222   11


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ...+|+||-......    .....+.|++||.++.-..
T Consensus       211 ~~g~Dvvid~~g~~~----~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          211 GIGADAAIDSIGGPD----GNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             TSCEEEEEESSCHHH----HHHHHHTEEEEEEEEECCC
T ss_pred             CCCCcEEEECCCChh----HHHHHHHhcCCCEEEEEee
Confidence            347999987655332    2334589999999998544

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.04  E-value=0.0098  Score=52.37  Aligned_cols=101  Identities=14%  Similarity=0.164  Sum_probs=64.6

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+...   ...
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~~~~~~~~~~~~~~~~~---~~~  215 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE----YGAEYLINASKEDILRQVLKF---TNG  215 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH---TTT
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCcEEEeCCCchHHHHHHHH---hCC
Confidence            3456789999994  4566677777765  4799999999988776654    343211111112222222222   113


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+|+||-....    ..++.+.+.|++||.++.-.
T Consensus       216 ~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          216 KGVDASFDSVGK----DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             SCEEEEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence            579999866553    35677888999999998743

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.04  E-value=0.02  Score=51.18  Aligned_cols=101  Identities=16%  Similarity=0.187  Sum_probs=64.9

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE--cChhhHHHHHHhCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG  191 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~~~~~~  191 (279)
                      ...++++||-+|+|. |..+..+++..+  + +|+++|.+++..+.+++    .|...-+....  .+..+.+....   
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~t---  258 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAG--ASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEKT---  258 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHT---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHH----cCCcEEEecccccchHHHHHHHHh---
Confidence            445678999999863 666777777653  5 89999999998877754    45431111110  12223333221   


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN  229 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd  229 (279)
                       .+.+|+||-....   ...++.+.+.|+++ |.++.-.
T Consensus       259 -~gg~Dvvid~~g~---~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          259 -NGGVDYAVECAGR---IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             -TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECC
T ss_pred             -CCCCCEEEECCCC---HHHHHHHHHHHhcCCCEEEEEc
Confidence             2479999865432   24577888999999 9998744

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.00  E-value=0.022  Score=51.65  Aligned_cols=106  Identities=11%  Similarity=0.124  Sum_probs=63.3

Q ss_pred             hcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          117 ILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       117 ~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ..++.+||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....+..+.+....   ....
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~i~~~t---~g~g  282 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLAKE----LGADHVIDPTKENFVEAVLDYT---NGLG  282 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSEEECTTTSCHHHHHHHHT---TTCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCEEEcCCCCCHHHHHHHHh---CCCC
Confidence            45678999999863 666677777764 2399999999988887765    3432111111123333333321   1347


Q ss_pred             EEEEEEeCCcc--chHHHHHHHHccCCCCcEEEEeCC
Q 023645          196 YDFAFVDAEKR--MYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       196 fDlI~id~~~~--~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +|+||-.....  .....++.+++.+++||.+++-..
T Consensus       283 ~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          283 AKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            99998655433  222333333455599999998543

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.98  E-value=0.016  Score=51.26  Aligned_cols=100  Identities=13%  Similarity=0.183  Sum_probs=65.0

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|...-+... .+..+.+....   ..
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~v~~~~-~~~~~~v~~~~---~~  225 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKS----VGADIVLPLE-EGWAKAVREAT---GG  225 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCSEEEESS-TTHHHHHHHHT---TT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcEEecCc-hhHHHHHHHHh---CC
Confidence            3456789999996  4577777788776  4799999999988877765    3433211111 23333333221   13


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+|+||-.....    .++.+.+.|++||.++.-.
T Consensus       226 ~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          226 AGVDMVVDPIGGP----AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             SCEEEEEESCC------CHHHHHHTEEEEEEEEEC-
T ss_pred             CCceEEEECCchh----HHHHHHHhhcCCCEEEEEE
Confidence            4799998765542    4677889999999998743

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.95  E-value=0.05  Score=48.36  Aligned_cols=106  Identities=17%  Similarity=0.151  Sum_probs=68.3

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc--ChhhHHHHHHh
Q 023645          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALIL  189 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~~~~  189 (279)
                      .....++++||-+|+|. |..+..+++..+  ++ |+++|.+++..+.+++. .    ..-+.+...  +..+....+.+
T Consensus       174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~  246 (363)
T 3m6i_A          174 RAGVRLGDPVLICGAGPIGLITMLCAKAAG--ACPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVE  246 (363)
T ss_dssp             HHTCCTTCCEEEECCSHHHHHHHHHHHHTT--CCSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHH
Confidence            34456778999999864 667777888764  55 99999999999888875 2    112333311  11222222222


Q ss_pred             CCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       190 ~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+...+|+||-....   ...++.+.+.|++||.++.-.
T Consensus       247 ~t~g~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          247 SFGGIEPAVALECTGV---ESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             HTSSCCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECC
T ss_pred             HhCCCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEEc
Confidence            1123579999865442   245778889999999999744

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.94  E-value=0.017  Score=50.72  Aligned_cols=101  Identities=14%  Similarity=0.174  Sum_probs=63.9

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+....   ..
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~i~~~~---~~  212 (333)
T 1wly_A          142 KVKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCHHTINYSTQDFAEVVREIT---GG  212 (333)
T ss_dssp             CCCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH---TT
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHHHHHHHHHh---CC
Confidence            3456789999995  5666777777765  4799999999987777654    2432111111112222222221   12


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+|++|.....    ..++.+.+.|++||.++.-.
T Consensus       213 ~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          213 KGVDVVYDSIGK----DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             CCEEEEEECSCT----TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCeEEEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence            479999876554    34678889999999988743

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.93  E-value=0.012  Score=51.75  Aligned_cols=101  Identities=14%  Similarity=0.114  Sum_probs=64.8

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+...   .+.
T Consensus       137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~---~~~  207 (325)
T 3jyn_A          137 QVKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKA----LGAWETIDYSHEDVAKRVLEL---TDG  207 (325)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHH---TTT
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH---hCC
Confidence            3456789999983  4566777777765  4799999999988877764    343211111112222222222   113


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+|+||-....    ..++.+.+.|++||.++.-.
T Consensus       208 ~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          208 KKCPVVYDGVGQ----DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             CCEEEEEESSCG----GGHHHHHTTEEEEEEEEECC
T ss_pred             CCceEEEECCCh----HHHHHHHHHhcCCCEEEEEe
Confidence            579999876554    34677889999999998854

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.93  E-value=0.12  Score=45.64  Aligned_cols=110  Identities=11%  Similarity=0.119  Sum_probs=74.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC--------------------CCCcEEEEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--------------------VSHKVKIKH  177 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--------------------~~~~v~~~~  177 (279)
                      .+...|+.+|||.......+....+ +.+++-||. |+.++.-++.+...+                    ..++..++.
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~  173 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA  173 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence            4567999999999998888887544 567888888 888888777776642                    135789999


Q ss_pred             cChhhH--HHHHHhC-CCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEE-EeCC
Q 023645          178 GLAADS--LKALILN-GEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIV-IDNV  230 (279)
Q Consensus       178 gd~~~~--l~~~~~~-~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv-~dd~  230 (279)
                      +|..+.  +..+... ++.+...+++.-+.     .+.....++.+.... |+|.++ ++-+
T Consensus       174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i  234 (334)
T 1rjd_A          174 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPI  234 (334)
T ss_dssp             CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred             cCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence            999763  3333222 22355677777664     445666777777766 566654 5543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.92  E-value=0.077  Score=47.40  Aligned_cols=97  Identities=20%  Similarity=0.262  Sum_probs=64.8

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++.+||-+|+|. |..+..+++..  +++|++++.+++..+.+++    .|..   .++.-.-.+....+     ..
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~-----~~  256 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH-----LK  256 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT-----TT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHh-----hc
Confidence            455778999999874 66777788776  4789999999998887765    3432   22222212222222     25


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .+|+||-......   .++.+.+.|+++|.++.-.
T Consensus       257 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          257 SFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             CEEEEEECCSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred             CCCEEEECCCCHH---HHHHHHHHhccCCEEEEec
Confidence            7999986554322   3567789999999988743

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.90  E-value=0.03  Score=50.09  Aligned_cols=102  Identities=17%  Similarity=0.235  Sum_probs=65.0

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE--cChhhHHHHHHhCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG  191 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~~~~~~  191 (279)
                      ...++++||-+|+|. |..+..+++..+  + +|+++|.+++..+.+++    .|...-+....  .+..+.+....   
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~---  258 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAG--AARIIGVDINKDKFAKAKE----VGATECVNPQDYKKPIQEVLTEMS---  258 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHT---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH----hCCceEecccccchhHHHHHHHHh---
Confidence            445678999999764 666777777763  5 89999999998877754    34421111110  12222333221   


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~  230 (279)
                       .+.+|+||-....   ...++.+.+.|++| |.++.-..
T Consensus       259 -~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          259 -NGGVDFSFEVIGR---LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             -TSCBSEEEECSCC---HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             -CCCCcEEEECCCC---HHHHHHHHHHhhcCCcEEEEecc
Confidence             2479999865442   24577888999999 99987443

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.90  E-value=0.061  Score=47.29  Aligned_cols=108  Identities=18%  Similarity=0.153  Sum_probs=69.1

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .....++++||-+|+|. |..+..+++... ...++++|.+++..+.+++    .|...-+.....+..+....+..   
T Consensus       155 ~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~---  226 (346)
T 4a2c_A          155 LAQGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRE---  226 (346)
T ss_dssp             HTTCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGG---
T ss_pred             HhccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcc---
Confidence            33456778999999864 446666777764 4578999999988777654    45443222222333333333321   


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      ...+|+|+.....   ...++.+.++|++||.+++-....
T Consensus       227 ~~g~d~v~d~~G~---~~~~~~~~~~l~~~G~~v~~g~~~  263 (346)
T 4a2c_A          227 LRFNQLILETAGV---PQTVELAVEIAGPHAQLALVGTLH  263 (346)
T ss_dssp             GCSSEEEEECSCS---HHHHHHHHHHCCTTCEEEECCCCS
T ss_pred             cCCcccccccccc---cchhhhhhheecCCeEEEEEeccC
Confidence            3567888765432   345778889999999999865543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.85  E-value=0.042  Score=48.54  Aligned_cols=102  Identities=9%  Similarity=0.058  Sum_probs=64.7

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEE-EcChhhHHHHHHhCCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK-HGLAADSLKALILNGE  192 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~-~gd~~~~l~~~~~~~~  192 (279)
                      ...++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .|...-+.+. ..+..+.+....    
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~----  235 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS----IGGEVFIDFTKEKDIVGAVLKAT----  235 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH----TTCCEEEETTTCSCHHHHHHHHH----
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH----cCCceEEecCccHhHHHHHHHHh----
Confidence            3456789999998  4566666677665  4799999999887766654    3432111111 112222333221    


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .+.+|+||.....   ...++.+.+.|++||.++.-..
T Consensus       236 ~~~~D~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          236 DGGAHGVINVSVS---EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             TSCEEEEEECSSC---HHHHHHHTTSEEEEEEEEECCC
T ss_pred             CCCCCEEEECCCc---HHHHHHHHHHHhcCCEEEEEeC
Confidence            2379999876543   2467888999999999987443

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.80  E-value=0.04  Score=48.55  Aligned_cols=100  Identities=23%  Similarity=0.186  Sum_probs=64.5

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++++||-+|+| .|..+..+++..  +.+|++++.+++..+.+++    .|...-+.....+..+.+...     .+
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~d~~~~~~~~~~~~~-----~~  229 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK-----VG  229 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH-----HS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCCEEecCCCccHHHHHHHH-----hC
Confidence            45567899999985 366677777765  4799999999988877654    344211111111222222222     14


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .+|+||.....   ...++.+.+.|++||.++.-.
T Consensus       230 ~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          230 GVHAAVVTAVS---KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             SEEEEEESSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECCCC---HHHHHHHHHHhhcCCEEEEec
Confidence            69999865543   245778889999999988743

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.78  E-value=0.032  Score=49.86  Aligned_cols=102  Identities=15%  Similarity=0.229  Sum_probs=65.0

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE--cChhhHHHHHHhCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG  191 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~~~~~~  191 (279)
                      ...++++||-+|+|. |..+..+++..+  + +|+++|.+++..+.+++    .|...-+....  .+..+.+....   
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~G--a~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~v~~~~---  257 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAG--ASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEMT---  257 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHHT---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH----cCCceEeccccccccHHHHHHHHh---
Confidence            345678999999764 566677777653  5 89999999998887764    34431111100  12222333221   


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~  230 (279)
                       .+.+|+||-....   ...++.+.+.|+++ |.++.-..
T Consensus       258 -~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          258 -DGGVDYSFECIGN---VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             -TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             -CCCCCEEEECCCc---HHHHHHHHHhhccCCcEEEEEec
Confidence             2479999865442   24577889999999 99987443

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.77  E-value=0.013  Score=51.43  Aligned_cols=101  Identities=17%  Similarity=0.123  Sum_probs=62.7

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|..  ..+ ..+-.+....+......
T Consensus       137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~----~g~~--~~~-~~~~~~~~~~~~~~~~~  207 (327)
T 1qor_A          137 EIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAW--QVI-NYREEDLVERLKEITGG  207 (327)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCS--EEE-ETTTSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC--EEE-ECCCccHHHHHHHHhCC
Confidence            3456789999993  4555666666654  4799999999888777765    2432  122 11111222222111113


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+|++|.....    ..++.+.+.|++||.++.-.
T Consensus       208 ~~~D~vi~~~g~----~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          208 KKVRVVYDSVGR----DTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             CCEEEEEECSCG----GGHHHHHHTEEEEEEEEECC
T ss_pred             CCceEEEECCch----HHHHHHHHHhcCCCEEEEEe
Confidence            479999877652    45678889999999988743

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.67  E-value=0.017  Score=51.03  Aligned_cols=98  Identities=12%  Similarity=0.138  Sum_probs=64.3

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc---ChhhHHHHHHhC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG---LAADSLKALILN  190 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g---d~~~~l~~~~~~  190 (279)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++   ..|..  ..+-..   +..+.+....  
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~---~~g~~--~~~d~~~~~~~~~~~~~~~--  222 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKT---KFGFD--DAFNYKEESDLTAALKRCF--  222 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TSCCS--EEEETTSCSCSHHHHHHHC--
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCc--eEEecCCHHHHHHHHHHHh--
Confidence            3456789999997  4566667777765  4799999999887776653   23432  122111   2333333321  


Q ss_pred             CCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                        .+.+|+||.....    ..++.+.+.|++||.+++-
T Consensus       223 --~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          223 --PNGIDIYFENVGG----KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             --TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEEC
T ss_pred             --CCCCcEEEECCCH----HHHHHHHHHHhcCCEEEEE
Confidence              2579999876543    3678889999999999874

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.66  E-value=0.021  Score=51.22  Aligned_cols=104  Identities=21%  Similarity=0.226  Sum_probs=66.7

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEE--EcChhhHHHHHHhCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HGLAADSLKALILNGE  192 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~--~gd~~~~l~~~~~~~~  192 (279)
                      ...++.+||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...-+...  ..+..+.+..+.    
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~~----  260 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAKK----FGVNEFVNPKDHDKPIQEVIVDLT----  260 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHHT----TTCCEEECGGGCSSCHHHHHHHHT----
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCcEEEccccCchhHHHHHHHhc----
Confidence            445678999999863 667777777764 2389999999998877654    4543211111  122333333331    


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNVL  231 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~~  231 (279)
                      .+.+|+||-....   ...++.+.+.|++| |.+++-...
T Consensus       261 ~gg~D~vid~~g~---~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          261 DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHhhccCCEEEEEccc
Confidence            3489999865442   34578889999997 999885543

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.64  E-value=0.023  Score=50.53  Aligned_cols=101  Identities=15%  Similarity=0.173  Sum_probs=65.0

Q ss_pred             hhcCCCEEEEEc--CccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG--~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++++||-+|  .|.|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+....    .
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~----~  233 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAET----G  233 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH----S
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHh----C
Confidence            345678999995  23566677777765  4799999999988877765    3433211111122333333321    3


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ..+|+||......    .++.+.+.|++||.++.-..
T Consensus       234 ~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          234 QGVDIILDMIGAA----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             SCEEEEEESCCGG----GHHHHHHTEEEEEEEEECCC
T ss_pred             CCceEEEECCCHH----HHHHHHHHhccCCEEEEEEe
Confidence            5799998765543    46778889999999887443

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.59  E-value=0.017  Score=51.13  Aligned_cols=100  Identities=18%  Similarity=0.226  Sum_probs=64.3

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .|...-+.....+..+.+....   ...
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~---~~~  234 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA----LGADETVNYTHPDWPKEVRRLT---GGK  234 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTSTTHHHHHHHHT---TTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHh---CCC
Confidence            446789999998  5677777778775  4799999999988877754    3432111111112222222221   124


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .+|+||.... .   ..++.+.+.|+++|.++.-.
T Consensus       235 ~~d~vi~~~g-~---~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          235 GADKVVDHTG-A---LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             CEEEEEESSC-S---SSHHHHHHHEEEEEEEEESS
T ss_pred             CceEEEECCC-H---HHHHHHHHhhccCCEEEEEe
Confidence            7999987665 2   24667888999999988743

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.50  E-value=0.049  Score=47.41  Aligned_cols=103  Identities=16%  Similarity=0.094  Sum_probs=66.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ...+++|+.||.|..++.+.++-- ... +.++|+++.+.+..+.++.      ...++.+|+.+.......+  .+.+|
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~-~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~--~~~~D   85 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGI-QVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQE--WGPFD   85 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTB-CEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHH--TCCCS
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCC-ccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcc--cCCcC
Confidence            445899999999999988877521 122 6999999988877666542      2467789987753322111  24799


Q ss_pred             EEEEeCC---------cc----c-----hHHHHHHHHccCCCCc------EEEEeCCC
Q 023645          198 FAFVDAE---------KR----M-----YQEYFELLLQLIRVGG------IIVIDNVL  231 (279)
Q Consensus       198 lI~id~~---------~~----~-----~~~~l~~~~~~Lk~gG------~lv~dd~~  231 (279)
                      +++...+         ..    +     +.+++ .+.+.++|..      ++++.||-
T Consensus        86 ll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~-rii~~~~P~~~~~~P~~~l~ENV~  142 (295)
T 2qrv_A           86 LVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFY-RLLHDARPKEGDDRPFFWLFENVV  142 (295)
T ss_dssp             EEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHH-HHHHHHSCCTTCCCCCEEEEEEES
T ss_pred             EEEecCCCccccccCccccccccccchhHHHHH-HHHHHhCcccccCCccEEEEEcCc
Confidence            9986542         10    1     12222 3345567762      89999985

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.48  E-value=0.022  Score=50.40  Aligned_cols=100  Identities=15%  Similarity=0.109  Sum_probs=64.4

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh-hhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~-~~~l~~~~~~~~~  193 (279)
                      .. ++++||-+|+|. |..+..+++...++++|+++|.+++..+.+++    .|..   .++.-+- .+....+..   .
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~---g  236 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGAD---YVSEMKDAESLINKLTD---G  236 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCS---EEECHHHHHHHHHHHHT---T
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCC---EEeccccchHHHHHhhc---C
Confidence            45 788999999863 56667777765114689999999988877765    3432   2221111 122222211   2


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+|+||-....   ...++.+.+.|++||.++.-.
T Consensus       237 ~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          237 LGASIAIDLVGT---EETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             CCEEEEEESSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCccEEEECCCC---hHHHHHHHHHhhcCCEEEEeC
Confidence            379999865543   235778889999999988743

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.47  E-value=0.046  Score=48.31  Aligned_cols=102  Identities=15%  Similarity=0.208  Sum_probs=64.4

Q ss_pred             HhhcCCCEEEEEcCc--cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc--ChhhHHHHHHhC
Q 023645          115 VQILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILN  190 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~~~~~  190 (279)
                      ....++++||-+|+|  .|..+..+++... +.+|+++|.+++..+.+++    .|..  ..+-..  +..+.+....  
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~--  236 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGAD--YVINASMQDPLAEIRRIT--  236 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHT--
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCC--EEecCCCccHHHHHHHHh--
Confidence            345567899999987  4555566666541 4699999999988877754    3432  122111  2222233321  


Q ss_pred             CCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                       ..+.+|+||.....   ...++.+.+.|+++|.++.-.
T Consensus       237 -~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          237 -ESKGVDAVIDLNNS---EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             -TTSCEEEEEESCCC---HHHHTTGGGGEEEEEEEEECC
T ss_pred             -cCCCceEEEECCCC---HHHHHHHHHHHhcCCEEEEEC
Confidence             01579999876543   245777889999999998743

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.47  E-value=0.028  Score=49.93  Aligned_cols=101  Identities=12%  Similarity=0.146  Sum_probs=62.6

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+....   ..
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~---~~  237 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV---GE  237 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH---CT
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHH----cCCCEEEeCCCchHHHHHHHHc---CC
Confidence            3456789999996  4566666677665  4799999999987776543    3432111111112222222221   12


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+|+||.....    ..++.+.+.|++||.++.-.
T Consensus       238 ~~~D~vi~~~G~----~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          238 KGIDIIIEMLAN----VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             TCEEEEEESCHH----HHHHHHHHHEEEEEEEEECC
T ss_pred             CCcEEEEECCCh----HHHHHHHHhccCCCEEEEEe
Confidence            479999866542    34677889999999988743

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=95.43  E-value=0.12  Score=40.32  Aligned_cols=102  Identities=14%  Similarity=0.198  Sum_probs=67.9

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      .-|||+|-|+|..=-.+.+.+| +-+|+.+|-.-....      .  ...+.-.++.||+.+.++...... ..+.-++-
T Consensus        42 GpVlElGLGNGRTydHLRe~~P-~R~I~vfDR~~~~hp------~--~~P~~e~~ilGdi~~tL~~~~~r~-g~~a~LaH  111 (174)
T 3iht_A           42 GPVYELGLGNGRTYHHLRQHVQ-GREIYVFERAVASHP------D--STPPEAQLILGDIRETLPATLERF-GATASLVH  111 (174)
T ss_dssp             SCEEEECCTTCHHHHHHHHHCC-SSCEEEEESSCCCCG------G--GCCCGGGEEESCHHHHHHHHHHHH-CSCEEEEE
T ss_pred             CceEEecCCCChhHHHHHHhCC-CCcEEEEEeeeccCC------C--CCCchHheecccHHHHHHHHHHhc-CCceEEEE
Confidence            4699999999999999999998 779999997432210      0  012234789999999887642211 34556666


Q ss_pred             EeCCccchHH---H----HHHHHccCCCCcEEEEeCCCC
Q 023645          201 VDAEKRMYQE---Y----FELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       201 id~~~~~~~~---~----l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      .|-...+...   .    -..+.++|.|||++|-+.-+.
T Consensus       112 aD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl~  150 (174)
T 3iht_A          112 ADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRMY  150 (174)
T ss_dssp             ECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCCC
T ss_pred             eecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccC
Confidence            6654222111   1    123358999999999987763

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.34  E-value=0.057  Score=47.81  Aligned_cols=100  Identities=14%  Similarity=0.104  Sum_probs=65.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      .+++|+.||.|..++.+.++--..-.+.++|+++.+.+.-+.|+..      ..++.+|+.+.......   ...+|+++
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~---~~~~D~l~   74 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIK---KWNVDTIL   74 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHH---HTTCCEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhc---cCCCCEEE
Confidence            4899999999999999887621013578999999988877776642      34667888765332211   23689998


Q ss_pred             EeCC--------c--------c-chHHHHHHHHccCC-CCcEEEEeCCC
Q 023645          201 VDAE--------K--------R-MYQEYFELLLQLIR-VGGIIVIDNVL  231 (279)
Q Consensus       201 id~~--------~--------~-~~~~~l~~~~~~Lk-~gG~lv~dd~~  231 (279)
                      ...+        .        . .+..++ .+.+.++ |. ++++.||-
T Consensus        75 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~-r~i~~~~~P~-~~vlENV~  121 (333)
T 4h0n_A           75 MSPPCQPFTRNGKYLDDNDPRTNSFLYLI-GILDQLDNVD-YILMENVK  121 (333)
T ss_dssp             ECCCCCCSEETTEECCTTCTTSCCHHHHH-HHGGGCTTCC-EEEEEECT
T ss_pred             ecCCCcchhhhhhccCCcCcccccHHHHH-HHHHHhcCCC-EEEEecch
Confidence            6543        0        1 122333 3445565 74 88888885

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.34  E-value=0.1  Score=45.98  Aligned_cols=93  Identities=14%  Similarity=0.171  Sum_probs=64.7

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++++||-+|+|. |..+..+++..  +++|+++|.+++..+.+++    .|...  .+  .+. +.   +     ..
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~--v~--~~~-~~---~-----~~  233 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALS----MGVKH--FY--TDP-KQ---C-----KE  233 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHH----TTCSE--EE--SSG-GG---C-----CS
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHh----cCCCe--ec--CCH-HH---H-----hc
Confidence            456788999999864 67777788876  4799999999998877754    45431  22  332 11   1     23


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .+|+||-......   .++.+.+.|++||.++.-..
T Consensus       234 ~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          234 ELDFIISTIPTHY---DLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             CEEEEEECCCSCC---CHHHHHTTEEEEEEEEECCC
T ss_pred             CCCEEEECCCcHH---HHHHHHHHHhcCCEEEEECC
Confidence            7999986544331   36678899999999998543

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.29  E-value=0.038  Score=49.01  Aligned_cols=102  Identities=13%  Similarity=0.122  Sum_probs=63.2

Q ss_pred             HhhcCC--CEEEEEcC--ccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHh
Q 023645          115 VQILGA--QRCIEVGV--YTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (279)
Q Consensus       115 ~~~~~~--~~VLEiG~--G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~  189 (279)
                      ....++  ++||-.|+  |.|..+..+++..  ++ +|++++.+++..+.+++.   .|....+.....+..+.+...  
T Consensus       154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~---~g~~~~~d~~~~~~~~~~~~~--  226 (357)
T 2zb4_A          154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSE---LGFDAAINYKKDNVAEQLRES--  226 (357)
T ss_dssp             SCCCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT---SCCSEEEETTTSCHHHHHHHH--
T ss_pred             cCCCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHH---cCCceEEecCchHHHHHHHHh--
Confidence            345567  89999997  4455666666654  46 999999998776665542   343211111111222222222  


Q ss_pred             CCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       190 ~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                       . .+.+|++|.....    ..++.+.+.|++||.++.-.
T Consensus       227 -~-~~~~d~vi~~~G~----~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          227 -C-PAGVDVYFDNVGG----NISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             -C-TTCEEEEEESCCH----HHHHHHHHTEEEEEEEEECC
T ss_pred             -c-CCCCCEEEECCCH----HHHHHHHHHhccCcEEEEEC
Confidence             1 2379999876652    56788899999999998743

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.29  E-value=0.013  Score=49.98  Aligned_cols=52  Identities=19%  Similarity=0.204  Sum_probs=40.2

Q ss_pred             EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc-----------------chHHHHHHHHccCCCCcEEEEe
Q 023645          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~-----------------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .+++++|+.+.+..+.    +++||+||+|++..                 .....++.+.++|+|||.+++.
T Consensus         5 ~~l~~gD~~~~l~~l~----~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVE----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSEEECCHHHHHHHSC----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeEEechHHHHHHhcc----ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            4688999998887652    46899999998732                 2244567778999999999885

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.27  E-value=0.015  Score=51.31  Aligned_cols=54  Identities=11%  Similarity=0.213  Sum_probs=41.4

Q ss_pred             CcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc-----------------chHHHHHHHHccCCCCcEEEEe
Q 023645          171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       171 ~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~-----------------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++.++++||+.+.++.+.    +++||+||+|++..                 .....++.+.++|+|||.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~l~----~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFP----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGSC----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCC----CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            457899999987765442    57899999998732                 2456677888999999998873

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.26  E-value=0.044  Score=48.07  Aligned_cols=95  Identities=15%  Similarity=0.030  Sum_probs=63.5

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      .+|||+.||.|..++-+-++-  --.+.++|+++.+.+.-+.|+.       -.++.+|+.+.....     -..+|+++
T Consensus         1 mkvidLFsG~GG~~~G~~~aG--~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~~-----~~~~D~l~   66 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDE-----FPKCDGII   66 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTT--CEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGGG-----SCCCSEEE
T ss_pred             CeEEEeCcCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHhh-----CCcccEEE
Confidence            379999999999998887651  1256799999998887776652       267889987653221     35689887


Q ss_pred             EeCC------------ccc-----hHHHHHHHHccCCCCcEEEEeCCC
Q 023645          201 VDAE------------KRM-----YQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       201 id~~------------~~~-----~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ...+            ..+     +.+++ .+...++|. ++++.||-
T Consensus        67 ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~-r~i~~~~Pk-~~~~ENV~  112 (331)
T 3ubt_Y           67 GGPPSQSWSEGGSLRGIDDPRGKLFYEYI-RILKQKKPI-FFLAENVK  112 (331)
T ss_dssp             CCCCGGGTEETTEECCTTCGGGHHHHHHH-HHHHHHCCS-EEEEEECC
T ss_pred             ecCCCCCcCCCCCccCCCCchhHHHHHHH-HHHhccCCe-EEEeeeec
Confidence            4432            111     22222 334567885 88899984

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.22  E-value=0.043  Score=49.24  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=64.0

Q ss_pred             hcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC---hhhHHHHHHhCCC
Q 023645          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL---AADSLKALILNGE  192 (279)
Q Consensus       117 ~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd---~~~~l~~~~~~~~  192 (279)
                      ..++++||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|..   .++..+   -.+....+.+...
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~~~  264 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDITH  264 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHHhC
Confidence            4567899999965 3666677777753 1599999999988777653    4542   222222   1122222211111


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ...+|+||-.....   ..++.+.+.|++||.++.-..
T Consensus       265 g~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          265 GRGADFILEATGDS---RALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             TSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCcEEEECCCCH---HHHHHHHHHHhcCCEEEEEec
Confidence            23699998655432   346778899999999987443

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.08  E-value=0.037  Score=48.93  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=62.4

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          119 GAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ++++||-+|+|. |..+..+++..  ++ +|++++.+++..+.+++    .|...-+.....+..+.+....   ....+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~---~g~g~  237 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKK----VGADYVINPFEEDVVKEVMDIT---DGNGV  237 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHH----HTCSEEECTTTSCHHHHHHHHT---TTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCCcCHHHHHHHHc---CCCCC
Confidence            678999999853 56667777765  45 89999999988777654    3432111111122222232221   12469


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |+||.....   ...++.+.+.|+++|.++.-.
T Consensus       238 D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          238 DVFLEFSGA---PKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             EEEEECSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             CEEEECCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence            999865542   245778889999999988743

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.98  E-value=0.043  Score=48.70  Aligned_cols=101  Identities=10%  Similarity=0.144  Sum_probs=62.4

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+...   ...
T Consensus       159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~---~~~  229 (354)
T 2j8z_A          159 NVQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEK----LGAAAGFNYKKEDFSEATLKF---TKG  229 (354)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHH---TTT
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChHHHHHHHHH---hcC
Confidence            3456789999984  4566666666665  4799999999988777743    243211111111222222222   112


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+|++|......    .++.+.+.|++||.++.-.
T Consensus       230 ~~~d~vi~~~G~~----~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          230 AGVNLILDCIGGS----YWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             SCEEEEEESSCGG----GHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEEECCCch----HHHHHHHhccCCCEEEEEe
Confidence            4799998766543    3667788999999998743

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.97  E-value=0.043  Score=48.94  Aligned_cols=97  Identities=16%  Similarity=0.125  Sum_probs=62.9

Q ss_pred             CCCEEEEEc-Cc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          119 GAQRCIEVG-VY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       119 ~~~~VLEiG-~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ++++||-+| +| .|..+..+++.+. +.+|++++.+++..+.+++    .|...   ++... .+....+.+. ..+.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~~----lGad~---vi~~~-~~~~~~v~~~-~~~g~  240 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVKS----LGAHH---VIDHS-KPLAAEVAAL-GLGAP  240 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHH----TTCSE---EECTT-SCHHHHHHTT-CSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHH----cCCCE---EEeCC-CCHHHHHHHh-cCCCc
Confidence            567899998 43 4777778887643 5799999999988777754    45431   22111 1222222222 24689


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+||-...   ....++.+.++|++||.++.-
T Consensus       241 Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          241 AFVFSTTH---TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEECSC---HHHHHHHHHHHSCTTCEEEEC
T ss_pred             eEEEECCC---chhhHHHHHHHhcCCCEEEEE
Confidence            98886443   224677888999999999874

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.95  E-value=0.02  Score=49.78  Aligned_cols=53  Identities=17%  Similarity=0.255  Sum_probs=39.0

Q ss_pred             cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc---c--------------------hHHHHHHHHccCCCCcEEEEe
Q 023645          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR---M--------------------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       172 ~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~---~--------------------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++++++||+.+.++.+    .+++||+|++|++..   .                    +...++.+.++|+|||.+++.
T Consensus        21 ~~~i~~gD~~~~l~~l----~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           21 VHRLHVGDAREVLASF----PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             CEEEEESCHHHHHTTS----CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEECcHHHHHhhC----CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            5799999999876544    147899999998732   1                    123456778999999998763

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=94.88  E-value=0.07  Score=47.10  Aligned_cols=97  Identities=15%  Similarity=0.189  Sum_probs=63.0

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++++||-+|+  |.|..+..+++..  +++|+++ .+++..+.+++    .|... +. ...+..+.+....   ..
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~~~~~~~---~~  214 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPEDYAAEHT---AG  214 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHHHHHHHH---TT
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHHHHHHHh---cC
Confidence            3456789999994  3577777788776  4799999 88877766654    35432 22 1222323332221   13


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..+|+||-....    ..++.+.+.|+++|.++.-
T Consensus       215 ~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          215 QGFDLVYDTLGG----PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             SCEEEEEESSCT----HHHHHHHHHEEEEEEEEES
T ss_pred             CCceEEEECCCc----HHHHHHHHHHhcCCeEEEE
Confidence            579998865542    4677888999999999873

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.87  E-value=0.13  Score=44.41  Aligned_cols=92  Identities=15%  Similarity=0.170  Sum_probs=62.5

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh-hhHHHHHHhCCCC
Q 023645          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNGEA  193 (279)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~-~~~l~~~~~~~~~  193 (279)
                      ..++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|..   .++.-+- .+....+      
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~------  187 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW------  187 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT------
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh------
Confidence            456789999997  4567777778776  4699999999988777654    3432   2222111 2222222      


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..+|+||. ...    ..++.+.+.|+++|.++.-
T Consensus       188 ~~~d~vid-~g~----~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          188 GGLDLVLE-VRG----KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             TSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC
T ss_pred             cCceEEEE-CCH----HHHHHHHHhhccCCEEEEE
Confidence            57999987 554    3567888999999998863

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=94.81  E-value=0.028  Score=49.49  Aligned_cols=53  Identities=15%  Similarity=0.117  Sum_probs=40.6

Q ss_pred             cEEEE-EcChhhHHHHHHhCCCCCcEEEEEEeCCcc--------------chHHHHHHHHccCCCCcEEEEe
Q 023645          172 KVKIK-HGLAADSLKALILNGEASSYDFAFVDAEKR--------------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       172 ~v~~~-~gd~~~~l~~~~~~~~~~~fDlI~id~~~~--------------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..+++ +||+.+.+..+.    +++||+||+|++..              .....+..+.++|+|||.+++.
T Consensus        38 ~~~l~i~gD~l~~L~~l~----~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~  105 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKLP----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF  105 (319)
T ss_dssp             EEEEEEECCHHHHHHTSC----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEECCcHHHHHHhCc----cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            46788 999998887552    46899999998732              1345567778999999999884

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.75  E-value=0.099  Score=46.33  Aligned_cols=93  Identities=12%  Similarity=0.114  Sum_probs=58.9

Q ss_pred             CEEEEEcCcc-CHHH-HHHH-HHCCCCCE-EEEEeCChh---HHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          121 QRCIEVGVYT-GYSS-LAIA-LVLPESGC-LVACERDAR---SLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       121 ~~VLEiG~G~-G~~t-~~la-~~~~~~~~-v~~iD~s~~---~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ++||-+|+|. |..+ ..++ +..  +++ |++++.+++   ..+.+++    .|.. .+.....+..+ +...     .
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~~-i~~~-----~  240 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIEE----LDAT-YVDSRQTPVED-VPDV-----Y  240 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHHH----TTCE-EEETTTSCGGG-HHHH-----S
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHHH----cCCc-ccCCCccCHHH-HHHh-----C
Confidence            8999999742 5555 6666 654  455 999999988   7777653    4432 12111123333 3333     1


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +.+|+||-....   ...++.+.+.|++||.++.-.
T Consensus       241 gg~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          241 EQMDFIYEATGF---PKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             CCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEe
Confidence            379999855432   245778889999999998744

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=94.71  E-value=0.097  Score=46.47  Aligned_cols=100  Identities=21%  Similarity=0.181  Sum_probs=63.6

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh-hHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA-DSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~-~~l~~~~~~~~  192 (279)
                      +...++++||-+|+|. |..+..+++..  +++|++++.+++..+.+++    .|..   .++.-.-. +....+     
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~-----  240 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKY-----  240 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHS-----
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----cCCC---EEEcCcCchHHHHHh-----
Confidence            3455778999999853 66667777765  4689999999988877765    3432   22221111 222332     


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .+.+|+||....... ...++.+.+.|++||.++.-.
T Consensus       241 ~~~~D~vid~~g~~~-~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          241 FDTFDLIVVCASSLT-DIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             CSCEEEEEECCSCST-TCCTTTGGGGEEEEEEEEECC
T ss_pred             hcCCCEEEECCCCCc-HHHHHHHHHHhcCCCEEEEec
Confidence            257999986544300 123556788999999988643

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.44  E-value=0.099  Score=46.13  Aligned_cols=75  Identities=8%  Similarity=-0.028  Sum_probs=51.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEE-EEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCL-VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v-~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ..+++|+.||.|..++.+.++--..-.+ .++|+++.+.+..+.|+..       .++++|+.+.......   ...+|+
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-------~~~~~DI~~~~~~~i~---~~~~Di   79 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-------EVQVKNLDSISIKQIE---SLNCNT   79 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-------CCBCCCTTTCCHHHHH---HTCCCE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-------CcccCChhhcCHHHhc---cCCCCE
Confidence            4489999999999999888752101356 7999999999888888742       1556777664322111   136899


Q ss_pred             EEEeCC
Q 023645          199 AFVDAE  204 (279)
Q Consensus       199 I~id~~  204 (279)
                      ++...+
T Consensus        80 l~ggpP   85 (327)
T 3qv2_A           80 WFMSPP   85 (327)
T ss_dssp             EEECCC
T ss_pred             EEecCC
Confidence            986544

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.09  E-value=0.13  Score=45.43  Aligned_cols=95  Identities=17%  Similarity=0.236  Sum_probs=61.7

Q ss_pred             CCCEEEEEc-Cc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          119 GAQRCIEVG-VY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       119 ~~~~VLEiG-~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ++++||-+| +| .|..+..+++..  +++|++++.+++..+.+++    .|... +--...+..+.+...    ....+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~-vi~~~~~~~~~~~~~----~~~g~  218 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK----MGADI-VLNHKESLLNQFKTQ----GIELV  218 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH----HTCSE-EECTTSCHHHHHHHH----TCCCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcE-EEECCccHHHHHHHh----CCCCc
Confidence            678999994 43 466667777765  4799999999988877765    34321 111111232333332    14579


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |+||-....   ...++.+.++|+++|.++.
T Consensus       219 Dvv~d~~g~---~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          219 DYVFCTFNT---DMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             EEEEESSCH---HHHHHHHHHHEEEEEEEEE
T ss_pred             cEEEECCCc---hHHHHHHHHHhccCCEEEE
Confidence            998865432   3456788899999999975

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=94.05  E-value=0.17  Score=44.40  Aligned_cols=48  Identities=4%  Similarity=0.042  Sum_probs=38.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCCh---hHHHHHHHHHHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA---RSLEVAKKYYERAG  168 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~---~~~~~a~~~~~~~g  168 (279)
                      .++..|||..||+|..+......   +-+.+|+|+++   +.++.+++++...+
T Consensus       241 ~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          241 HPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            46779999999999988887765   45899999999   99999999988766

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.87  E-value=0.078  Score=46.62  Aligned_cols=59  Identities=7%  Similarity=-0.032  Sum_probs=45.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .++..|||..||+|..+....+.   +-+.+|+|+++...+.++++++..+..  ...+++|+.
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~  309 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYN  309 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHH
Confidence            46779999999999988776654   459999999999999999998866543  334444443

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=93.85  E-value=0.11  Score=47.71  Aligned_cols=101  Identities=15%  Similarity=0.180  Sum_probs=64.5

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh-------------
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-------------  180 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~-------------  180 (279)
                      ...++++||-+|+  |.|..+..+++..  ++++++++.+++..+.+++    .|...-+.....|.             
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~  298 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKE  298 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHH
Confidence            3456789999997  3577777788876  4799999999888777754    34432111111111             


Q ss_pred             ----hhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          181 ----ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       181 ----~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                          .+.+..+.   +...+|+||-....    ..++.+.++|++||.++.-.
T Consensus       299 ~~~~~~~i~~~t---~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          299 WKRFGKRIRELT---GGEDIDIVFEHPGR----ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHHH---TSCCEEEEEECSCH----HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHHh---CCCCCcEEEEcCCc----hhHHHHHHHhhCCcEEEEEe
Confidence                02222221   13589998865443    46778889999999999743

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=93.68  E-value=0.18  Score=45.29  Aligned_cols=94  Identities=12%  Similarity=0.087  Sum_probs=66.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-cEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      +.+||.|+.+.|..+.+++..     .++.+.-|--.....+.|++.+++.. .+++...  .+.   .     ...||+
T Consensus        39 ~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~---~-----~~~~~~  103 (375)
T 4dcm_A           39 RGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TAD---Y-----PQQPGV  103 (375)
T ss_dssp             CSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TSC---C-----CSSCSE
T ss_pred             CCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--ccc---c-----ccCCCE
Confidence            357999999999999888743     34555445555567788999988865 3666522  111   1     478999


Q ss_pred             EEEeCCc--cchHHHHHHHHccCCCCcEEEEe
Q 023645          199 AFVDAEK--RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       199 I~id~~~--~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |++-.++  ......+..+...|++|+.+++-
T Consensus       104 v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~  135 (375)
T 4dcm_A          104 VLIKVPKTLALLEQQLRALRKVVTSDTRIIAG  135 (375)
T ss_dssp             EEEECCSCHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred             EEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            9987763  34566788888999999988764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.53  E-value=0.058  Score=47.55  Aligned_cols=96  Identities=10%  Similarity=0.143  Sum_probs=62.1

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE---cChhhHHHHHHhC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH---GLAADSLKALILN  190 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~---gd~~~~l~~~~~~  190 (279)
                      .. ++++||-+|+|. |..+..+++..  ++ +|++++.+++..+.+++. .     +  .++.   .+..+.+....  
T Consensus       162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~--  228 (343)
T 2dq4_A          162 GV-SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVT--  228 (343)
T ss_dssp             CC-TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHH--
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhc--
Confidence            44 678999999853 56667777775  45 899999998877766553 1     1  1121   12223333221  


Q ss_pred             CCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                        ...+|+||-....   ...++.+.+.|+++|.++.-.
T Consensus       229 --~~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          229 --GSGVEVLLEFSGN---EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             --SSCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             --CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence              2469999865543   245778889999999988743

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=93.52  E-value=0.29  Score=43.59  Aligned_cols=98  Identities=15%  Similarity=0.147  Sum_probs=62.1

Q ss_pred             cCCCEEEEEcCc--cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          118 LGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       118 ~~~~~VLEiG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      .++.+||-+|++  .|..+..+++..  +++|+++. +++..+.+++    .|...-+.....+..+.+..+.    .+.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~--Ga~Vi~~~-~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t----~g~  231 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS--GYIPIATC-SPHNFDLAKS----RGAEEVFDYRAPNLAQTIRTYT----KNN  231 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHHH----TTCSEEEETTSTTHHHHHHHHT----TTC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe-CHHHHHHHHH----cCCcEEEECCCchHHHHHHHHc----cCC
Confidence            567899999983  678888888876  46888885 7877666544    4543212222233333333321    345


Q ss_pred             EEEEEEeCCccchHHHHHHHHccC-CCCcEEEEeC
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQLI-RVGGIIVIDN  229 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~L-k~gG~lv~dd  229 (279)
                      +|+||-....   ...++.+.+.| ++||.++.-.
T Consensus       232 ~d~v~d~~g~---~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          232 LRYALDCITN---VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCEEEESSCS---HHHHHHHHHHSCTTCEEEEESS
T ss_pred             ccEEEECCCc---hHHHHHHHHHhhcCCCEEEEEe
Confidence            9998865442   24567778888 6999988743

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.47  E-value=0.29  Score=37.00  Aligned_cols=93  Identities=13%  Similarity=0.066  Sum_probs=58.9

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYD  197 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~fD  197 (279)
                      .+|+=+|+  |..+..+++.+. .+.+|+++|.+++.++.+++    .    .+.++.+|..+.  +...    .-...|
T Consensus         8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~~l~~a----~i~~ad   73 (140)
T 3fwz_A            8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R----GVRAVLGNAANEEIMQLA----HLECAK   73 (140)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEESCTTSHHHHHHT----TGGGCS
T ss_pred             CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c----CCCEEECCCCCHHHHHhc----CcccCC
Confidence            46888887  666666666542 25689999999988766553    2    257788988642  3321    135789


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +|++..+........-...+.+.|+..++.
T Consensus        74 ~vi~~~~~~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           74 WLILTIPNGYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             EEEEECCChHHHHHHHHHHHHHCCCCeEEE
Confidence            998765543333333344566777777665

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=93.45  E-value=0.19  Score=45.90  Aligned_cols=100  Identities=17%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh-------------
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-------------  180 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~-------------  180 (279)
                      ...++++||-+|+  |.|..+..+++..  ++++++++.+++..+.+++    .|...-+.....+.             
T Consensus       217 ~~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~  290 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVE  290 (447)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccch
Confidence            4456789999996  3466777777765  4799999999888777643    45432121111111             


Q ss_pred             -----hhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          181 -----ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       181 -----~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                           .+.+....    ...+|+||-....    ..++.+.+.|++||.++.-.
T Consensus       291 ~~~~~~~~v~~~~----g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          291 TGRKLAKLVVEKA----GREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHH----SSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred             hhhHHHHHHHHHh----CCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence                 11122221    3579999865553    35778889999999998744

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=92.80  E-value=0.081  Score=46.20  Aligned_cols=92  Identities=14%  Similarity=0.204  Sum_probs=57.9

Q ss_pred             EEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh-hhHHHHHHhCCCCCcEEE
Q 023645          122 RCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNGEASSYDF  198 (279)
Q Consensus       122 ~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~-~~~l~~~~~~~~~~~fDl  198 (279)
                      +||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|...  .+-..+. .+....+    ..+.+|+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~--~i~~~~~~~~~~~~~----~~~~~d~  219 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAKE--VLAREDVMAERIRPL----DKQRWAA  219 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCSE--EEECC---------C----CSCCEEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cCCcE--EEecCCcHHHHHHHh----cCCcccE
Confidence            7999996  4577777888876  4689999999888777754    45332  1111111 1111111    1347999


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ||-.....    .++.+.+.|++||.++.-.
T Consensus       220 vid~~g~~----~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          220 AVDPVGGR----TLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             EEECSTTT----THHHHHHTEEEEEEEEECS
T ss_pred             EEECCcHH----HHHHHHHhhccCCEEEEEe
Confidence            88654432    4677889999999998743

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=92.74  E-value=0.42  Score=42.23  Aligned_cols=107  Identities=12%  Similarity=0.119  Sum_probs=59.5

Q ss_pred             hhcCC-CEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE---cChhhHHHHHHh
Q 023645          116 QILGA-QRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH---GLAADSLKALIL  189 (279)
Q Consensus       116 ~~~~~-~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~---gd~~~~l~~~~~  189 (279)
                      ...++ .+||-+|+  +.|..+..+++..  +++++++..+++..+..++.++..|...-+....   .+..+.+.....
T Consensus       163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~  240 (364)
T 1gu7_A          163 KLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIK  240 (364)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHH
T ss_pred             ccCCCCcEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhh
Confidence            34466 89999986  4566777788775  4688888765554222223334456432111111   222223332210


Q ss_pred             CCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       190 ~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ++ ...+|+||-.....   ... .+.++|+++|.++.-.
T Consensus       241 ~~-~~g~Dvvid~~G~~---~~~-~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          241 QS-GGEAKLALNCVGGK---SST-GIARKLNNNGLMLTYG  275 (364)
T ss_dssp             HH-TCCEEEEEESSCHH---HHH-HHHHTSCTTCEEEECC
T ss_pred             cc-CCCceEEEECCCch---hHH-HHHHHhccCCEEEEec
Confidence            00 35799998654432   223 6679999999998744

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=92.69  E-value=0.081  Score=46.08  Aligned_cols=91  Identities=13%  Similarity=0.097  Sum_probs=60.2

Q ss_pred             EEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          122 RCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       122 ~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      +||-+|+  +.|..+..+++..  +++|++++.+++..+.+++    .|...  .+-..+. +.   . ..-..+.+|+|
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~-~~---~-~~~~~~~~d~v  215 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKS----LGANR--ILSRDEF-AE---S-RPLEKQLWAGA  215 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTCSE--EEEGGGS-SC---C-CSSCCCCEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCE--EEecCCH-HH---H-HhhcCCCccEE
Confidence            4999986  4677888888876  4699999999998888765    35332  1211111 11   1 11113579988


Q ss_pred             EEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          200 FVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |-....    ..++.+.+.|+++|.++.-.
T Consensus       216 ~d~~g~----~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          216 IDTVGD----KVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             EESSCH----HHHHHHHHTEEEEEEEEECC
T ss_pred             EECCCc----HHHHHHHHHHhcCCEEEEEe
Confidence            754432    26888899999999998744

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=92.54  E-value=0.16  Score=44.84  Aligned_cols=98  Identities=12%  Similarity=0.103  Sum_probs=55.9

Q ss_pred             hhcCCCEEEEEcCc--cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++++||-+|++  .|..+..+++... ..+|++++ +++..+.++     .|...-+. ...+..+.+...   . .
T Consensus       139 ~~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~~~~~~---~-~  206 (349)
T 4a27_A          139 NLREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQEVKRI---S-A  206 (349)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHHHHHHH---C-T
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHHHHHHh---c-C
Confidence            44567899999973  4666666776654 46899888 555444443     34432112 222333333332   1 3


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +.+|+||-......    ++.+.++|++||.++.-.
T Consensus       207 ~g~Dvv~d~~g~~~----~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          207 EGVDIVLDCLCGDN----TGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             TCEEEEEEECC-----------CTTEEEEEEEEEEC
T ss_pred             CCceEEEECCCchh----HHHHHHHhhcCCEEEEEC
Confidence            57999986554322    367889999999998743

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=92.52  E-value=0.36  Score=42.84  Aligned_cols=95  Identities=15%  Similarity=0.121  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ++++||-+|+|. |..+..+++..  +++|++++.+++..+.+++   ..|..   .++...-.+.+...     .+.+|
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~---~v~~~~~~~~~~~~-----~~~~D  253 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALK---NFGAD---SFLVSRDQEQMQAA-----AGTLD  253 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHH---TSCCS---EEEETTCHHHHHHT-----TTCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---hcCCc---eEEeccCHHHHHHh-----hCCCC
Confidence            678999999753 55566667665  4799999999987766553   23432   22221112233332     24799


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +||.......   .++.+.+.|+++|.++.-.
T Consensus       254 ~vid~~g~~~---~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          254 GIIDTVSAVH---PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             EEEECCSSCC---CSHHHHHHEEEEEEEEECC
T ss_pred             EEEECCCcHH---HHHHHHHHHhcCCEEEEEc
Confidence            9986654321   2345677889999988743

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=92.49  E-value=0.39  Score=42.58  Aligned_cols=94  Identities=12%  Similarity=0.110  Sum_probs=59.1

Q ss_pred             CCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCCh---hHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          120 AQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA---RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       120 ~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~---~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      +++||-+|+|. |..+..+++..  +++|++++.++   +..+.+++    .|.. .+. .. +..+.+...     .+.
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga~-~v~-~~-~~~~~~~~~-----~~~  246 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKTN-YYN-SS-NGYDKLKDS-----VGK  246 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTCE-EEE-CT-TCSHHHHHH-----HCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCCc-eec-hH-HHHHHHHHh-----CCC
Confidence            78999999842 44555566654  46999999998   76666553    3432 121 11 222222221     257


Q ss_pred             EEEEEEeCCccchHHHH-HHHHccCCCCcEEEEeCC
Q 023645          196 YDFAFVDAEKRMYQEYF-ELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l-~~~~~~Lk~gG~lv~dd~  230 (279)
                      +|+||.......   .+ +.+.+.|+++|.++.-..
T Consensus       247 ~d~vid~~g~~~---~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          247 FDVIIDATGADV---NILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             EEEEEECCCCCT---HHHHHHGGGEEEEEEEEECSC
T ss_pred             CCEEEECCCChH---HHHHHHHHHHhcCCEEEEEec
Confidence            999987655332   35 778899999999887543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=92.33  E-value=1.2  Score=32.82  Aligned_cols=95  Identities=17%  Similarity=0.108  Sum_probs=55.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      ++|+=+|+  |..+..+++.+. .+.+|+.+|.+++..+..++   ..+    +.++.+|..+. ..+... ....+|+|
T Consensus         5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~---~~~----~~~~~~d~~~~-~~l~~~-~~~~~d~v   73 (140)
T 1lss_A            5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA---EID----ALVINGDCTKI-KTLEDA-GIEDADMY   73 (140)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HCS----SEEEESCTTSH-HHHHHT-TTTTCSEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---hcC----cEEEEcCCCCH-HHHHHc-CcccCCEE
Confidence            57888876  777777666542 24689999999876654432   112    45667776432 111111 12568999


Q ss_pred             EEeCCccchHHHHHHHHccCCCCcEEE
Q 023645          200 FVDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      ++..+.......+..+.+.+.++-+++
T Consensus        74 i~~~~~~~~~~~~~~~~~~~~~~~ii~  100 (140)
T 1lss_A           74 IAVTGKEEVNLMSSLLAKSYGINKTIA  100 (140)
T ss_dssp             EECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             EEeeCCchHHHHHHHHHHHcCCCEEEE
Confidence            987654433344445556677765444

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=92.10  E-value=0.77  Score=40.49  Aligned_cols=98  Identities=16%  Similarity=0.201  Sum_probs=61.0

Q ss_pred             hhc-CCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QIL-GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~-~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ... ++.+||-+|+| .|..+..+++..  +++|++++.+++..+.+++   ..|... + +-..+ .+.+...     .
T Consensus       176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~~-v-i~~~~-~~~~~~~-----~  242 (357)
T 2cf5_A          176 GLKQPGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQ---DLGADD-Y-VIGSD-QAKMSEL-----A  242 (357)
T ss_dssp             STTSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHT---TSCCSC-E-EETTC-HHHHHHS-----T
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---HcCCce-e-ecccc-HHHHHHh-----c
Confidence            344 67899999975 255566667665  4799999999887766552   344332 1 21112 2223322     2


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +.+|+||-......   .++.+.+.|++||.++.-.
T Consensus       243 ~g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          243 DSLDYVIDTVPVHH---ALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             TTEEEEEECCCSCC---CSHHHHTTEEEEEEEEECS
T ss_pred             CCCCEEEECCCChH---HHHHHHHHhccCCEEEEeC
Confidence            47999986554321   2456778999999998743

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=92.06  E-value=0.27  Score=43.81  Aligned_cols=97  Identities=12%  Similarity=0.119  Sum_probs=59.2

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..++++||-+|+  |.|..+..+++..  +++|++++ +++..+.++    ..|...   ++..+-.+....+..   ..
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~--Ga~Vi~~~-~~~~~~~~~----~lGa~~---v~~~~~~~~~~~~~~---~~  247 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW--DAHVTAVC-SQDASELVR----KLGADD---VIDYKSGSVEEQLKS---LK  247 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHH----HTTCSE---EEETTSSCHHHHHHT---SC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEe-ChHHHHHHH----HcCCCE---EEECCchHHHHHHhh---cC
Confidence            456789999993  3566777778776  47999988 666655553    345431   222111122222221   25


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .+|+||-......  ..++...+.|++||.++.-
T Consensus       248 g~D~vid~~g~~~--~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          248 PFDFILDNVGGST--ETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             CBSEEEESSCTTH--HHHGGGGBCSSSCCEEEES
T ss_pred             CCCEEEECCCChh--hhhHHHHHhhcCCcEEEEe
Confidence            7999886544321  2356778899999999873

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=91.71  E-value=0.24  Score=42.93  Aligned_cols=89  Identities=13%  Similarity=0.094  Sum_probs=57.7

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++++||-+|+| .|..+..+++..  +++|++++ +++..+.+++    .|..   .++ .| .+   .+     ..
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~-~d-~~---~v-----~~  198 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNA--GYVVDLVS-ASLSQALAAK----RGVR---HLY-RE-PS---QV-----TQ  198 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEEC-SSCCHHHHHH----HTEE---EEE-SS-GG---GC-----CS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEE-ChhhHHHHHH----cCCC---EEE-cC-HH---Hh-----CC
Confidence            34567899999985 366777788776  46999999 8888877765    3432   222 23 21   11     36


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .+|+||-.....    .+..+.+.|++||.++.-
T Consensus       199 g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          199 KYFAIFDAVNSQ----NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             CEEEEECC-----------TTGGGEEEEEEEEEE
T ss_pred             CccEEEECCCch----hHHHHHHHhcCCCEEEEE
Confidence            899988443322    235678999999998874

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=91.62  E-value=0.52  Score=41.90  Aligned_cols=97  Identities=14%  Similarity=0.141  Sum_probs=56.3

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .++++|+-+|+|. |..+..++...  +++|+.+|.+++..+.+++....     .+.....+..+....+      ..+
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~------~~~  231 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV------AEA  231 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH------HTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHH------cCC
Confidence            3568999999852 33344445555  36999999999888777665431     2323322322222222      368


Q ss_pred             EEEEEeCCccc--hHH-HHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAEKRM--YQE-YFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~~~~--~~~-~l~~~~~~Lk~gG~lv~  227 (279)
                      |+|+.......  .+. ..+...+.+++||+++-
T Consensus       232 DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivd  265 (361)
T 1pjc_A          232 DLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVD  265 (361)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred             CEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEE
Confidence            99976543221  001 13456688999997764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=91.49  E-value=1.1  Score=41.17  Aligned_cols=103  Identities=15%  Similarity=0.152  Sum_probs=61.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHH------------HHhCCCCcEEEEEcChhhHHHHH
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYY------------ERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~------------~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      ++|.-||+  |+.+..++..+.. +.+|+++|.+++.++..++..            +..-...++++. .|..+.    
T Consensus         3 mkI~VIG~--G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea----   75 (450)
T 3gg2_A            3 LDIAVVGI--GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQA----   75 (450)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHH----
T ss_pred             CEEEEECc--CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHH----
Confidence            46777877  6666666655432 468999999998876655411            000001223332 222221    


Q ss_pred             HhCCCCCcEEEEEEeCCcc----------chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          188 ILNGEASSYDFAFVDAEKR----------MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~~~----------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                           -...|+||+..+..          .....++.+.+.|++|.+++......+|.
T Consensus        76 -----~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  128 (450)
T 3gg2_A           76 -----VPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGS  128 (450)
T ss_dssp             -----GGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             -----HhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcc
Confidence                 14578998865433          56677888889999988777665544443

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.48  E-value=0.44  Score=42.72  Aligned_cols=98  Identities=13%  Similarity=0.144  Sum_probs=55.8

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..+++|+-+|+|. |.....++..+  +.+|+++|.+++..+.+++.+   |..  +.....+..+ +....     ...
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~---g~~--~~~~~~~~~~-l~~~l-----~~a  232 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEF---CGR--IHTRYSSAYE-LEGAV-----KRA  232 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TTS--SEEEECCHHH-HHHHH-----HHC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhc---CCe--eEeccCCHHH-HHHHH-----cCC
Confidence            4678999999842 33333344444  469999999998776665433   221  2222222222 22221     467


Q ss_pred             EEEEEeCCccc--h-HHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAEKRM--Y-QEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~~~~--~-~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+|+.......  . .-+.+...+.++|||+|+--
T Consensus       233 DvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~v  267 (377)
T 2vhw_A          233 DLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDI  267 (377)
T ss_dssp             SEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEG
T ss_pred             CEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEE
Confidence            99987432111  1 11135667889999988753

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.48  E-value=1.1  Score=38.22  Aligned_cols=144  Identities=22%  Similarity=0.261  Sum_probs=80.7

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--H----HHHH
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALI  188 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l----~~~~  188 (279)
                      +..+++.+|--|.+.| ++..+++.+. .+++|+.+|.+++.++.+.+.+   +  .++..+.+|..+.  .    ....
T Consensus        25 ~rL~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~   98 (273)
T 4fgs_A           25 QRLNAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVK   98 (273)
T ss_dssp             CTTTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHH
Confidence            3467888998887655 5666665542 3679999999998776554433   3  3467888887542  1    2221


Q ss_pred             hCCCCCcEEEEEEeCCc-----------cch-----------HHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCCh--
Q 023645          189 LNGEASSYDFAFVDAEK-----------RMY-----------QEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA--  244 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~~-----------~~~-----------~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~--  244 (279)
                      +.  -++.|+++.++..           +++           ....+.+.+.++++|.||.-.- ..|....+.....  
T Consensus        99 ~~--~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS-~~~~~~~~~~~~Y~a  175 (273)
T 4fgs_A           99 AE--AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS-TAGSTGTPAFSVYAA  175 (273)
T ss_dssp             HH--HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC-GGGGSCCTTCHHHHH
T ss_pred             HH--cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee-hhhccCCCCchHHHH
Confidence            11  2689999876531           111           1123444578888887665322 2233222222111  


Q ss_pred             hhHHHHHHHHHhhh---CCCeEE-EEee
Q 023645          245 KTISIRNFNKNLME---DERVSI-SMVP  268 (279)
Q Consensus       245 ~~~~~~~~~~~l~~---~~~~~~-~~lp  268 (279)
                      ..-++..|.+.+..   ..++.+ ++.|
T Consensus       176 sKaav~~ltr~lA~Ela~~gIrVN~V~P  203 (273)
T 4fgs_A          176 SKAALRSFARNWILDLKDRGIRINTLSP  203 (273)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcccCeEEEEEee
Confidence            12257777776632   344554 3444

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.45  E-value=2.8  Score=36.33  Aligned_cols=89  Identities=11%  Similarity=0.019  Sum_probs=55.4

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-C-CEEEEEeCChh---HHHHHHHHHHHhCCCCcEEEEEc-ChhhHHHHHHhCCCCC
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE-S-GCLVACERDAR---SLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEAS  194 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~-~-~~v~~iD~s~~---~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~~~~~~~~~  194 (279)
                      ++|--||+  |..+..++..+.. + .+|+++|.+++   ..+...+.+...|.       .. +..+..         .
T Consensus        25 m~IgvIG~--G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s~~e~~---------~   86 (317)
T 4ezb_A           25 TTIAFIGF--GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLDDVAGI---------A   86 (317)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEESSGGGG---------G
T ss_pred             CeEEEECc--cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCCHHHHH---------h
Confidence            57888887  6666666655432 4 58999999973   22222222333342       22 333221         4


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .-|+||+..+.....+.++.+.+.+++|.+++-
T Consensus        87 ~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~  119 (317)
T 4ezb_A           87 CADVVLSLVVGAATKAVAASAAPHLSDEAVFID  119 (317)
T ss_dssp             GCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             cCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEE
Confidence            569999887766666667888888998876654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.02  E-value=1.1  Score=33.41  Aligned_cols=92  Identities=10%  Similarity=0.181  Sum_probs=55.1

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYD  197 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~fD  197 (279)
                      ++|+-+|+  |..+..+++.+. .+.+|+++|.+++.++.+++    .+    +.++.+|..+.  +...    ....+|
T Consensus         7 ~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~----~~~~~d   72 (141)
T 3llv_A            7 YEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----EG----FDAVIADPTDESFYRSL----DLEGVS   72 (141)
T ss_dssp             CSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHS----CCTTCS
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhC----CcccCC
Confidence            46888887  667777766553 25689999999987665543    22    57788888653  2222    135789


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +|++..+............+.+. ...++.
T Consensus        73 ~vi~~~~~~~~n~~~~~~a~~~~-~~~iia  101 (141)
T 3llv_A           73 AVLITGSDDEFNLKILKALRSVS-DVYAIV  101 (141)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHHC-CCCEEE
T ss_pred             EEEEecCCHHHHHHHHHHHHHhC-CceEEE
Confidence            99886653322222333334444 444443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=90.99  E-value=1.6  Score=39.91  Aligned_cols=105  Identities=10%  Similarity=0.165  Sum_probs=63.1

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHH------------HHHhCCCCcEEEEEcChhhH
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY------------YERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~------------~~~~g~~~~v~~~~gd~~~~  183 (279)
                      +...-++|--||+  |+.+..++..+..+.+|+++|.+++.++..++.            +.. + ..++++. .|..+.
T Consensus        32 r~~~~mkIaVIGl--G~mG~~lA~~La~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~-~-~~~l~~t-td~~ea  106 (432)
T 3pid_A           32 RGSEFMKITISGT--GYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE-K-PLNFRAT-TDKHDA  106 (432)
T ss_dssp             ---CCCEEEEECC--SHHHHHHHHHHHTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-S-CCCEEEE-SCHHHH
T ss_pred             cccCCCEEEEECc--CHHHHHHHHHHHcCCeEEEEecCHHHhhHHhccCCccccccHHHHHhh-c-cCCeEEE-cCHHHH
Confidence            3344568888877  666666665554457999999999988766541            111 1 1123332 232222


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCcc-----------chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          184 LKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      +         ...|+||+..+..           ......+.+.+ |+||.++|......+|.
T Consensus       107 ~---------~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgt  159 (432)
T 3pid_A          107 Y---------RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGF  159 (432)
T ss_dssp             H---------TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTH
T ss_pred             H---------hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHH
Confidence            1         4568888764422           24556677778 99998888776666664

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=90.91  E-value=0.81  Score=40.74  Aligned_cols=99  Identities=14%  Similarity=0.140  Sum_probs=56.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..+++|+-+|+  |..+..+++.+ ..+.+|+++|.+++..+.+++.+   +.  .+.....+.. .+....     ..+
T Consensus       164 l~~~~V~ViGa--G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~-~l~~~~-----~~~  230 (369)
T 2eez_A          164 VAPASVVILGG--GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEA-NIKKSV-----QHA  230 (369)
T ss_dssp             BCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHH-HHHHHH-----HHC
T ss_pred             CCCCEEEEECC--CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHH-HHHHHH-----hCC
Confidence            45789999998  45554444332 12469999999998766654422   32  2333323332 222221     468


Q ss_pred             EEEEEeCCccc--hHH-HHHHHHccCCCCcEEEEeC
Q 023645          197 DFAFVDAEKRM--YQE-YFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       197 DlI~id~~~~~--~~~-~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |+|+.......  ... ..+...+.+++||+++.-.
T Consensus       231 DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          231 DLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             SEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            99987654321  111 2456778899999877543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=90.74  E-value=1.2  Score=37.05  Aligned_cols=83  Identities=23%  Similarity=0.121  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC--CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--C
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~  192 (279)
                      ..++||-.| |+|..+..+++.+.  .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.  +..+.++-  .
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            356788777 66778888877653  25799999999877766666665544  3578889998642  22221100  0


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      .+.+|+||..+.
T Consensus        80 ~g~id~li~~Ag   91 (276)
T 1wma_A           80 YGGLDVLVNNAG   91 (276)
T ss_dssp             HSSEEEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            147999987653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=90.73  E-value=2  Score=30.51  Aligned_cols=80  Identities=23%  Similarity=0.159  Sum_probs=50.2

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-CC-CEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh--HHHHHHhCCCCCc
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLP-ES-GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASS  195 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~-~~-~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~~~~~~~~~~  195 (279)
                      .++|+-+|+  |..+..+++.+. .+ .+|+.+|.+++..+...    .    ..+.++.+|..+  .+...     -..
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~-----~~~   69 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKA-----LGG   69 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHH-----TTT
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHH-----HcC
Confidence            358999998  777776665542 23 58999999987665443    1    235677777754  23333     257


Q ss_pred             EEEEEEeCCccchHHHHHH
Q 023645          196 YDFAFVDAEKRMYQEYFEL  214 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~  214 (279)
                      +|+||...+........+.
T Consensus        70 ~d~vi~~~~~~~~~~~~~~   88 (118)
T 3ic5_A           70 FDAVISAAPFFLTPIIAKA   88 (118)
T ss_dssp             CSEEEECSCGGGHHHHHHH
T ss_pred             CCEEEECCCchhhHHHHHH
Confidence            8999987765444343333

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.72  E-value=1.1  Score=35.18  Aligned_cols=97  Identities=12%  Similarity=0.049  Sum_probs=56.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-C-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLP-E-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~-~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ..+|+=+|+  |..+..+++.+. . +.+|+++|.+++..+.+++    .|    +.++.+|..+. ..+..-.+-..+|
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~-~~l~~~~~~~~ad  107 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDP-DFWERILDTGHVK  107 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCH-HHHHTBCSCCCCC
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCH-HHHHhccCCCCCC
Confidence            447888876  677777666553 2 4589999999987655432    23    45667776532 1111110135689


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +|++..+........-...+.+.|++.++.
T Consensus       108 ~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~  137 (183)
T 3c85_A          108 LVLLAMPHHQGNQTALEQLQRRNYKGQIAA  137 (183)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEEeCCChHHHHHHHHHHHHHCCCCEEEE
Confidence            998855433222223334455677777776

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=90.53  E-value=2.4  Score=35.36  Aligned_cols=83  Identities=16%  Similarity=0.140  Sum_probs=53.7

Q ss_pred             cCCCEEEEEcCccC-HHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--H----HHHHh
Q 023645          118 LGAQRCIEVGVYTG-YSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALIL  189 (279)
Q Consensus       118 ~~~~~VLEiG~G~G-~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l----~~~~~  189 (279)
                      ..++++|--|.+.+ .++..+++.+. .+++|+.++.+++..+.+.+.+++.+- .++.++.+|..+.  .    ....+
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            45788999886431 24444444332 367999999999888888877776553 2478888887542  1    11111


Q ss_pred             CCCCCcEEEEEEeC
Q 023645          190 NGEASSYDFAFVDA  203 (279)
Q Consensus       190 ~~~~~~fDlI~id~  203 (279)
                      .  -+..|.++.++
T Consensus        83 ~--~G~iD~lvnnA   94 (256)
T 4fs3_A           83 D--VGNIDGVYHSI   94 (256)
T ss_dssp             H--HCCCSEEEECC
T ss_pred             H--hCCCCEEEecc
Confidence            1  26899888764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=90.51  E-value=1.7  Score=36.18  Aligned_cols=81  Identities=15%  Similarity=0.156  Sum_probs=51.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--C
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~  192 (279)
                      ..++++|-.|++ |..+..+++.+. .+.+|+.++.+++.++...+.+     ..++.++.+|..+.  ...+.+.-  .
T Consensus         6 l~gk~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            6 YQGKKAIVIGGT-HGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHH
Confidence            456789988855 556666666542 3679999999988766555443     23688999998652  11111100  0


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      .+.+|+++.++.
T Consensus        80 ~g~id~lv~nAg   91 (255)
T 4eso_A           80 LGAIDLLHINAG   91 (255)
T ss_dssp             HSSEEEEEECCC
T ss_pred             hCCCCEEEECCC
Confidence            258999987653

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=90.50  E-value=0.61  Score=43.26  Aligned_cols=58  Identities=14%  Similarity=0.087  Sum_probs=42.7

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (279)
                      .+++|+.||.|..++-+.++   +. .|.++|+++.+.+.-+.|+.   ......++.+|+.+..
T Consensus        89 ~~viDLFaG~GGlslG~~~a---G~~~v~avE~d~~A~~ty~~N~~---~~p~~~~~~~DI~~i~  147 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESI---GGQCVFTSEWNKHAVRTYKANHY---CDPATHHFNEDIRDIT  147 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTT---TEEEEEEECCCHHHHHHHHHHSC---CCTTTCEEESCTHHHH
T ss_pred             ceEEEecCCccHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHhcc---cCCCcceeccchhhhh
Confidence            48999999999999888764   33 48899999988777666652   1112456778887654

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=90.36  E-value=0.43  Score=43.62  Aligned_cols=49  Identities=16%  Similarity=0.166  Sum_probs=39.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC----CCCEEEEEeCChhHHHHHHHHHHH
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDARSLEVAKKYYER  166 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~----~~~~v~~iD~s~~~~~~a~~~~~~  166 (279)
                      ..+-+|+|+|.|+|....-+++.+.    ...+++.||+|+...+.-++.+..
T Consensus       136 ~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          136 SGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             HTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             cCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            3467999999999999888876542    124899999999998887877764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=90.32  E-value=3.3  Score=34.41  Aligned_cols=85  Identities=9%  Similarity=-0.027  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCccC-HHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--C
Q 023645          119 GAQRCIEVGVYTG-YSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (279)
Q Consensus       119 ~~~~VLEiG~G~G-~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~  192 (279)
                      .++++|-.|++.| ..+..+++.+ ..+.+|+.++.++...+.+++..+..+- .++.++.+|..+.  +..+.++-  .
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            4678999986622 2444444443 2367999999988777776666665443 2588999988642  22211100  0


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      .+.+|.++..+.
T Consensus        85 ~g~id~li~~Ag   96 (266)
T 3oig_A           85 VGVIHGIAHCIA   96 (266)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCeeEEEEccc
Confidence            257899887653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=90.31  E-value=0.81  Score=39.83  Aligned_cols=89  Identities=19%  Similarity=0.215  Sum_probs=57.2

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-CC--EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh-HHHHHHhCCCCCcE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE-SG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD-SLKALILNGEASSY  196 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~-~~--~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~-~l~~~~~~~~~~~f  196 (279)
                      ++|.=||+|  ..+..++..+.. +.  +|+++|.+++..+.+++    .|..+  . ...+..+ .         -...
T Consensus        34 ~kI~IIG~G--~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~--~-~~~~~~~~~---------~~~a   95 (314)
T 3ggo_A           34 QNVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID--E-GTTSIAKVE---------DFSP   95 (314)
T ss_dssp             SEEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS--E-EESCTTGGG---------GGCC
T ss_pred             CEEEEEeeC--HHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc--h-hcCCHHHHh---------hccC
Confidence            589999874  455444443321 33  89999999987766543    34322  1 1223322 1         2457


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+||+..+.....+.++.+.+.+++|.++ +|
T Consensus        96 DvVilavp~~~~~~vl~~l~~~l~~~~iv-~d  126 (314)
T 3ggo_A           96 DFVMLSSPVRTFREIAKKLSYILSEDATV-TD  126 (314)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHSCTTCEE-EE
T ss_pred             CEEEEeCCHHHHHHHHHHHhhccCCCcEE-EE
Confidence            99999887777778888888889888654 44

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.16  E-value=2.8  Score=34.22  Aligned_cols=94  Identities=18%  Similarity=0.134  Sum_probs=61.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYD  197 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~fD  197 (279)
                      .++|+=+|+  |..+..+++.+...+.|+.+|.+++.++.++     .    .+.++.+|+.+.  +...    .-...|
T Consensus         9 ~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~~~l~~a----~i~~ad   73 (234)
T 2aef_A            9 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR-----S----GANFVHGDPTRVSDLEKA----NVRGAR   73 (234)
T ss_dssp             -CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH-----T----TCEEEESCTTCHHHHHHT----TCTTCS
T ss_pred             CCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh-----c----CCeEEEcCCCCHHHHHhc----Ccchhc
Confidence            457888876  7888889888764333999999998765443     1    268899998642  3221    135789


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .|++..+............+.+.|+..++..
T Consensus        74 ~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           74 AVIVDLESDSETIHCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             EEEEcCCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            9888655443333444455667787666653

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=90.10  E-value=0.85  Score=39.48  Aligned_cols=96  Identities=13%  Similarity=0.060  Sum_probs=59.6

Q ss_pred             HHhhcCCCEEEEEc-Cc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC
Q 023645          114 LVQILGAQRCIEVG-VY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (279)
Q Consensus       114 l~~~~~~~~VLEiG-~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~  191 (279)
                      .....++++||-+| +| .|..+..+++..  +++|++++ +++..+.++    +.|...   ++..+-.+.....    
T Consensus       147 ~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~~~~----~lGa~~---~i~~~~~~~~~~~----  212 (321)
T 3tqh_A          147 QAEVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHAFLK----ALGAEQ---CINYHEEDFLLAI----  212 (321)
T ss_dssp             HTTCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHHHHH----HHTCSE---EEETTTSCHHHHC----
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHHHHH----HcCCCE---EEeCCCcchhhhh----
Confidence            34556788999986 44 577777888876  46899887 444444443    456532   2222211212211    


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                       -..+|+||-....    ..++.+.+.|++||.++.-
T Consensus       213 -~~g~D~v~d~~g~----~~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          213 -STPVDAVIDLVGG----DVGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             -CSCEEEEEESSCH----HHHHHHGGGEEEEEEEEEC
T ss_pred             -ccCCCEEEECCCc----HHHHHHHHhccCCCEEEEe
Confidence             2579998865443    2237788999999999874

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.03  E-value=3.4  Score=34.68  Aligned_cols=108  Identities=18%  Similarity=0.167  Sum_probs=64.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCC------------hhHHHHHHHHHHHhCCCCcEEEEEcChhhH-
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERD------------ARSLEVAKKYYERAGVSHKVKIKHGLAADS-  183 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s------------~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-  183 (279)
                      ..+++||-.|++ |.++..+++.+. .+.+|+.+|.+            .+..+.+...++..+  .++.++.+|..+. 
T Consensus         8 l~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            8 VQDKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred             cCCCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence            346789988865 556666666542 35799999987            555555555555544  4689999998652 


Q ss_pred             -HHHHHhCC--CCCcEEEEEEeCCc---------cch-----------HHHHHHHHccCCCCcEEEEe
Q 023645          184 -LKALILNG--EASSYDFAFVDAEK---------RMY-----------QEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       184 -l~~~~~~~--~~~~fDlI~id~~~---------~~~-----------~~~l~~~~~~Lk~gG~lv~d  228 (279)
                       +..+.++-  .-+.+|+++.++..         +.+           ....+.+.+.++++|.||.-
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence             11111100  02578999877541         111           12344556777888877753

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=89.98  E-value=0.61  Score=40.96  Aligned_cols=97  Identities=10%  Similarity=0.041  Sum_probs=57.1

Q ss_pred             CEEEEE-cCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          121 QRCIEV-GVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       121 ~~VLEi-G~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++||=. |+| .|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+.....   ...+|+
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~---~~g~D~  236 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEATLREVMK---AEQPRI  236 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHHHHHHHHH---HHCCCE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHHHHHHHhc---CCCCcE
Confidence            566654 332 345555566665  4799999999998887764    34332111111233333332211   246999


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ||-.....    .++.+.+.|++||.++.-..
T Consensus       237 vid~~g~~----~~~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          237 FLDAVTGP----LASAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             EEESSCHH----HHHHHHHHSCTTCEEEECCC
T ss_pred             EEECCCCh----hHHHHHhhhcCCCEEEEEec
Confidence            88655432    34678899999999998543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=89.81  E-value=2.6  Score=37.37  Aligned_cols=91  Identities=8%  Similarity=0.102  Sum_probs=58.3

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      .++|.=||+  |..+..++..+. .+.+|+++|.+++..+.+.+    .|.    .. ..+..+....      ....|+
T Consensus        22 ~mkIgiIGl--G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~----~g~----~~-~~s~~e~~~~------a~~~Dv   84 (358)
T 4e21_A           22 SMQIGMIGL--GRMGADMVRRLRKGGHECVVYDLNVNAVQALER----EGI----AG-ARSIEEFCAK------LVKPRV   84 (358)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----TTC----BC-CSSHHHHHHH------SCSSCE
T ss_pred             CCEEEEECc--hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----CCC----EE-eCCHHHHHhc------CCCCCE
Confidence            468888887  556666555442 24689999999987654432    232    11 2233333332      245699


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ||+..+.......++.+.+.|++|.+|+-
T Consensus        85 Vi~~vp~~~v~~vl~~l~~~l~~g~iiId  113 (358)
T 4e21_A           85 VWLMVPAAVVDSMLQRMTPLLAANDIVID  113 (358)
T ss_dssp             EEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             EEEeCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence            99877655777888888899998766553

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=89.59  E-value=1.9  Score=32.71  Aligned_cols=96  Identities=11%  Similarity=0.089  Sum_probs=58.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCCh-hHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY  196 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~-~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~f  196 (279)
                      ++|+=+|+  |..+..+++.+. .+.+|+.+|.++ +..+..++...     ..+.++.||..+.  +...    .-...
T Consensus         4 ~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a----~i~~a   72 (153)
T 1id1_A            4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKA----GIDRC   72 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHH----TTTTC
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHc----ChhhC
Confidence            46777775  788877776653 246899999974 44433333221     2378899998642  3222    13578


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |+|++..+............+.+.|...++.
T Consensus        73 d~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           73 RAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             CEEEEecCChHHHHHHHHHHHHHCCCCEEEE
Confidence            9998876544444444555566666666665

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=89.49  E-value=1.2  Score=34.05  Aligned_cols=99  Identities=11%  Similarity=0.065  Sum_probs=56.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ...++|+=+|+  |..+..+++.+. .+.+|+.+|.+++..+.+++   .    ..+.++.+|..+. ..+... ....+
T Consensus        17 ~~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~----~g~~~~~~d~~~~-~~l~~~-~~~~a   85 (155)
T 2g1u_A           17 QKSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E----FSGFTVVGDAAEF-ETLKEC-GMEKA   85 (155)
T ss_dssp             CCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T----CCSEEEESCTTSH-HHHHTT-TGGGC
T ss_pred             cCCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c----CCCcEEEecCCCH-HHHHHc-CcccC
Confidence            45678999987  666666655442 24689999999876543321   1    1245666776432 112111 12468


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |+|++.............+.+.+.+...++.
T Consensus        86 d~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~  116 (155)
T 2g1u_A           86 DMVFAFTNDDSTNFFISMNARYMFNVENVIA  116 (155)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHHCCCCeEEE
Confidence            9999876544443444444555555556655

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=89.40  E-value=1.2  Score=39.24  Aligned_cols=102  Identities=15%  Similarity=0.167  Sum_probs=60.1

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC-hhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd-~~~~l~~~~~~~~  192 (279)
                      ....++++||-+|+| .|..+..+++..+ +++|+++|.+++..+.+++    .|...  .+-..+ ..+.+..+.   .
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~v~~~~---~  251 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGADH--VVDARRDPVKQVMELT---R  251 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCSE--EEETTSCHHHHHHHHT---T
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCE--EEeccchHHHHHHHHh---C
Confidence            445677899999985 2445556666652 4699999999988777753    45322  111111 222233321   1


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ...+|+||-...... ...++.+.+.  +||.++.-.
T Consensus       252 g~g~Dvvid~~G~~~-~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          252 GRGVNVAMDFVGSQA-TVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             TCCEEEEEESSCCHH-HHHHGGGGEE--EEEEEEECC
T ss_pred             CCCCcEEEECCCCch-HHHHHHHhhc--CCCEEEEEe
Confidence            237999986544221 0146666776  899888743

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=89.10  E-value=3.9  Score=34.75  Aligned_cols=105  Identities=16%  Similarity=0.225  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhH-HHHHHHHHHHhCCCCcEEEEEcChhhH--HHH----HHhC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAADS--LKA----LILN  190 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~-~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~----~~~~  190 (279)
                      .+++||-.|++ |.++..+++.+. .+.+|+.++.+++. .+.+.+..+..+  .++.++.+|..+.  ...    ..+.
T Consensus        46 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            46789988855 556666666542 35799999988753 444445454433  4689999998652  111    1111


Q ss_pred             CCCCcEEEEEEeCCc----c--------c-----------hHHHHHHHHccCCCCcEEEEe
Q 023645          191 GEASSYDFAFVDAEK----R--------M-----------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       191 ~~~~~fDlI~id~~~----~--------~-----------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                        -+.+|+++.++..    .        +           .....+.+.+.++++|.||.-
T Consensus       123 --~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          123 --LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             --HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             --cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence              2578999876431    0        0           112344556778888877753

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=89.08  E-value=1.5  Score=36.96  Aligned_cols=88  Identities=18%  Similarity=0.211  Sum_probs=54.6

Q ss_pred             EEEEEcCccCHHHHHHHHHCCC-CC--EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC-cEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLPE-SG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS-SYD  197 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~-~~--~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~-~fD  197 (279)
                      +|.=||+  |..+..++..+.. +.  +|+++|.+++..+.++    ..|...  .. ..+..+.         -. ..|
T Consensus         3 ~I~iIG~--G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~g~~~--~~-~~~~~~~---------~~~~aD   64 (281)
T 2g5c_A            3 NVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--EG-TTSIAKV---------EDFSPD   64 (281)
T ss_dssp             EEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--EE-ESCGGGG---------GGTCCS
T ss_pred             EEEEEec--CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH----HCCCcc--cc-cCCHHHH---------hcCCCC
Confidence            6777887  5555555544321 23  7999999988766544    334421  11 1232221         13 679


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +|++..+.....+.++.+.+.++++.+++.
T Consensus        65 vVilavp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           65 FVMLSSPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             EEEEcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence            999987766667778888888888875553

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=89.06  E-value=2.8  Score=34.84  Aligned_cols=83  Identities=17%  Similarity=0.119  Sum_probs=53.2

Q ss_pred             cCCCEEEEEcC-ccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHH----HHh
Q 023645          118 LGAQRCIEVGV-YTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKA----LIL  189 (279)
Q Consensus       118 ~~~~~VLEiG~-G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~----~~~  189 (279)
                      ..+++||-.|+ |.| ++..+++.+ ..+.+|+.++.+++..+.+.+.++..+ ..++.++.+|..+.  +..    ..+
T Consensus        20 l~~k~vlITGasg~G-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (266)
T 3o38_A           20 LKGKVVLVTAAAGTG-IGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVE   97 (266)
T ss_dssp             TTTCEEEESSCSSSS-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCc-hHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            34678888886 444 344444433 236799999999988777777665443 24699999998642  211    111


Q ss_pred             CCCCCcEEEEEEeCC
Q 023645          190 NGEASSYDFAFVDAE  204 (279)
Q Consensus       190 ~~~~~~fDlI~id~~  204 (279)
                      .  .+++|+++..+.
T Consensus        98 ~--~g~id~li~~Ag  110 (266)
T 3o38_A           98 K--AGRLDVLVNNAG  110 (266)
T ss_dssp             H--HSCCCEEEECCC
T ss_pred             H--hCCCcEEEECCC
Confidence            1  257899988754

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=88.99  E-value=3  Score=36.03  Aligned_cols=83  Identities=12%  Similarity=0.037  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHH----HHhCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKA----LILNG  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~----~~~~~  191 (279)
                      .+++||-.|++ |.++..+++.+ ..+.+|+.++.+++..+.+.+.+...+...++.++.+|..+.  +..    .... 
T Consensus         7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-   84 (319)
T 3ioy_A            7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR-   84 (319)
T ss_dssp             TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh-
Confidence            46789988865 55666666654 236799999999988888777777666544689999998652  121    1111 


Q ss_pred             CCCcEEEEEEeCC
Q 023645          192 EASSYDFAFVDAE  204 (279)
Q Consensus       192 ~~~~fDlI~id~~  204 (279)
                       .+.+|+++.++.
T Consensus        85 -~g~id~lv~nAg   96 (319)
T 3ioy_A           85 -FGPVSILCNNAG   96 (319)
T ss_dssp             -TCCEEEEEECCC
T ss_pred             -CCCCCEEEECCC
Confidence             257999998764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=88.47  E-value=2  Score=39.34  Aligned_cols=104  Identities=16%  Similarity=0.239  Sum_probs=61.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHH------------HHhCCCCcEEEEEcChhhHHHH
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYY------------ERAGVSHKVKIKHGLAADSLKA  186 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~------------~~~g~~~~v~~~~gd~~~~l~~  186 (279)
                      .-+|--||+  |+++..++..+.. +.+|+++|.+++.++..++..            ++.-...++++. .|..+.+  
T Consensus         8 ~~~~~vIGl--G~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~t-td~~ea~--   82 (446)
T 4a7p_A            8 SVRIAMIGT--GYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFT-TDLAEGV--   82 (446)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEE-SCHHHHH--
T ss_pred             ceEEEEEcC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEE-CCHHHHH--
Confidence            346777776  6666666655432 468999999998876654420            000001223332 2322221  


Q ss_pred             HHhCCCCCcEEEEEEeCC--cc---------chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          187 LILNGEASSYDFAFVDAE--KR---------MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       187 ~~~~~~~~~fDlI~id~~--~~---------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                             ..-|+||+.-+  ..         ...+.++.+.+.|++|.++|....+.+|.
T Consensus        83 -------~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  135 (446)
T 4a7p_A           83 -------KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGT  135 (446)
T ss_dssp             -------TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTH
T ss_pred             -------hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchH
Confidence                   45688887633  11         35667788889999998888766555554

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=88.35  E-value=0.11  Score=45.28  Aligned_cols=93  Identities=15%  Similarity=0.148  Sum_probs=58.5

Q ss_pred             EEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          122 RCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       122 ~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      +||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|...   ++  |..+........-....+|+|
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~---v~--~~~~~~~~~~~~~~~~~~d~v  221 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGASE---VI--SREDVYDGTLKALSKQQWQGA  221 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTCSE---EE--EHHHHCSSCCCSSCCCCEEEE
T ss_pred             eEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCcE---EE--ECCCchHHHHHHhhcCCccEE
Confidence            7999996  4566777777765  4689999999888777754    34321   22  111100000000012469998


Q ss_pred             EEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          200 FVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |-....    ..++.+.+.|++||.++.-.
T Consensus       222 id~~g~----~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          222 VDPVGG----KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             EESCCT----HHHHHHHTTEEEEEEEEECC
T ss_pred             EECCcH----HHHHHHHHhhcCCCEEEEEe
Confidence            865543    35778899999999998743

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=88.31  E-value=8.3  Score=30.63  Aligned_cols=69  Identities=17%  Similarity=0.038  Sum_probs=47.0

Q ss_pred             EEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      +||-.| |+|..+..+++.+ ..+.+|++++.++......        ....++++.+|..+.-...     -..+|.||
T Consensus         2 kilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~~D~~d~~~~~-----~~~~d~vi   67 (224)
T 3h2s_A            2 KIAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR--------LGATVATLVKEPLVLTEAD-----LDSVDAVV   67 (224)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--------TCTTSEEEECCGGGCCHHH-----HTTCSEEE
T ss_pred             EEEEEc-CCCHHHHHHHHHHHHCCCEEEEEEecccccccc--------cCCCceEEecccccccHhh-----cccCCEEE
Confidence            678777 5688888877765 2357999999987654321        1235899999997642222     25689998


Q ss_pred             EeCC
Q 023645          201 VDAE  204 (279)
Q Consensus       201 id~~  204 (279)
                      ..+.
T Consensus        68 ~~ag   71 (224)
T 3h2s_A           68 DALS   71 (224)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            7664

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=88.16  E-value=2.9  Score=38.13  Aligned_cols=99  Identities=13%  Similarity=0.282  Sum_probs=57.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHH------------HHhCCCCcEEEEEcChhhHHHHH
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYY------------ERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~------------~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      .+.--||+  |+++..++..+.. +.+|+++|++++.++..++..            ++.-...++.+. .|        
T Consensus        12 ~~~~ViGl--GyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~t-td--------   80 (431)
T 3ojo_A           12 SKLTVVGL--GYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVS-TT--------   80 (431)
T ss_dssp             CEEEEECC--STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-SS--------
T ss_pred             CccEEEee--CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEe-Cc--------
Confidence            35555666  5666665554432 458999999998876655410            000001112222 11        


Q ss_pred             HhCCCCCcEEEEEEeCCcc------------chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          188 ILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~~~------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                           ...-|+||+.-+..            ......+.+.+.|++|.++|......+|.
T Consensus        81 -----~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgt  135 (431)
T 3ojo_A           81 -----PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKT  135 (431)
T ss_dssp             -----CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTH
T ss_pred             -----hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhH
Confidence                 13468888754311            14455677888999998888877777765

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=88.14  E-value=2.9  Score=42.28  Aligned_cols=101  Identities=13%  Similarity=0.033  Sum_probs=64.7

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCC--EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC------C
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN------G  191 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~--~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~------~  191 (279)
                      ..+++|+.||.|.+++-+.++   +.  .+.++|+++.+.+.-+.|+.      ...++.+|+.+........      +
T Consensus       540 ~l~~iDLFaG~GGlslGl~~A---G~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~~di~~~~~  610 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQA---GISDTLWAIEMWDPAAQAFRLNNP------GSTVFTEDCNILLKLVMAGETTNSRG  610 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHH---TSEEEEEEECSSHHHHHHHHHHCT------TSEEECSCHHHHHHHHHHTCSBCTTC
T ss_pred             CCeEEEeccCccHHHHHHHHC---CCCceEEEEECCHHHHHHHHHhCC------CCccccccHHHHhhhccchhhhhhhh
Confidence            348999999999999998876   33  57899999988877666542      2567788876554322110      0


Q ss_pred             ----CCCcEEEEEEeCC--------cc---c--------hHHHHHHHHccCCCCcEEEEeCCC
Q 023645          192 ----EASSYDFAFVDAE--------KR---M--------YQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       192 ----~~~~fDlI~id~~--------~~---~--------~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                          ..+.+|+|+...+        ..   .        +..++ .+...++|. ++++.||-
T Consensus       611 ~~lp~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~-riv~~~rPk-~~llENV~  671 (1002)
T 3swr_A          611 QRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFL-SYCDYYRPR-FFLLENVR  671 (1002)
T ss_dssp             CBCCCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHH-HHHHHHCCS-EEEEEEEG
T ss_pred             hhcccCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHH-HHHHHhCCC-EEEEeccH
Confidence                1246899886543        10   0        11222 334556775 78888874

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=88.11  E-value=1.5  Score=38.92  Aligned_cols=96  Identities=15%  Similarity=0.064  Sum_probs=59.9

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHH------hCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYER------AGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~------~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .++|.-||+  |.++..++..+.. +.+|+.+|.+++.++..++.-..      ..+..++.+. .|..+.   +     
T Consensus        29 ~mkI~VIGa--G~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~ea---~-----   97 (356)
T 3k96_A           29 KHPIAILGA--GSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKAS---L-----   97 (356)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHHH---H-----
T ss_pred             CCeEEEECc--cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHHH---H-----
Confidence            357888888  5566655555432 35799999998877665542110      0111223332 233222   1     


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                       ...|+||+..+.....+.++.+.+.++++.+++.
T Consensus        98 -~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs  131 (356)
T 3k96_A           98 -EGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAW  131 (356)
T ss_dssp             -TTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             -hcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence             4579999988777777888899999998876553

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=87.98  E-value=3.1  Score=36.09  Aligned_cols=95  Identities=17%  Similarity=0.087  Sum_probs=61.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      .++|+=+|+  |..+..+++.+...+.|+.+|.+++.++ +++        ..+.++.||+.+. ..+... +-...|.+
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~-~~L~~a-~i~~a~~v  181 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-VLR--------SGANFVHGDPTRV-SDLEKA-NVRGARAV  181 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH--------TTCEEEESCTTSH-HHHHHT-CSTTEEEE
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh--------CCcEEEEeCCCCH-HHHHhc-ChhhccEE
Confidence            347888775  8888888887643334999999998876 443        2378999998653 222111 14678999


Q ss_pred             EEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          200 FVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ++..+.+...-..-...+.+.|...++.
T Consensus       182 i~~~~~d~~n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          182 IVDLESDSETIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             EECCSSHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             EEcCCccHHHHHHHHHHHHHCCCCeEEE
Confidence            8865543333333444566777766665

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=87.84  E-value=1.9  Score=34.98  Aligned_cols=93  Identities=18%  Similarity=0.123  Sum_probs=58.6

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDF  198 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~fDl  198 (279)
                      +|+=+|+  |..+..+++.+. .+..|+.+|.+++.++...+.   .    .+.++.+|+.+.  +...    .-...|+
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~----~~~~i~gd~~~~~~l~~a----~i~~ad~   68 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L----KATIIHGDGSHKEILRDA----EVSKNDV   68 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S----SSEEEESCTTSHHHHHHH----TCCTTCE
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c----CCeEEEcCCCCHHHHHhc----CcccCCE
Confidence            4666675  777777776653 256899999999876554321   1    257889998652  3322    1357899


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |++..+............+.+.+...++.
T Consensus        69 vi~~~~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           69 VVILTPRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             EEECCSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             EEEecCCcHHHHHHHHHHHHHcCCCeEEE
Confidence            98876554444445555555556666665

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=87.81  E-value=0.81  Score=41.00  Aligned_cols=43  Identities=23%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHH
Q 023645          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (279)
Q Consensus       118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (279)
                      .++.+|+=+|+|. |..+..+++.++  .+|+.+|.++...+.+++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          170 VPPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVES  213 (384)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            4688999999863 444555666664  689999999887666543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=87.72  E-value=8.5  Score=32.60  Aligned_cols=82  Identities=20%  Similarity=0.132  Sum_probs=51.8

Q ss_pred             cCCCEEEEEcCccC-HHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHH----HHh
Q 023645          118 LGAQRCIEVGVYTG-YSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKA----LIL  189 (279)
Q Consensus       118 ~~~~~VLEiG~G~G-~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~----~~~  189 (279)
                      ..++++|-.|.+.| .++..+++.+ ..+.+|+.++.++...+.+++..+..+   ++.++.+|..+.  +..    ..+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHH
Confidence            46789999997633 2444444443 235799999999766666666555444   478889998642  222    211


Q ss_pred             CCCCCcEEEEEEeCC
Q 023645          190 NGEASSYDFAFVDAE  204 (279)
Q Consensus       190 ~~~~~~fDlI~id~~  204 (279)
                      .  -+.+|+++.++.
T Consensus       106 ~--~g~iD~lVnnAG  118 (293)
T 3grk_A          106 K--WGKLDFLVHAIG  118 (293)
T ss_dssp             H--TSCCSEEEECCC
T ss_pred             h--cCCCCEEEECCc
Confidence            1  257999987754

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=87.50  E-value=6.7  Score=33.27  Aligned_cols=83  Identities=13%  Similarity=0.057  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--C
Q 023645          119 GAQRCIEVGVYT-GYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (279)
Q Consensus       119 ~~~~VLEiG~G~-G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~  192 (279)
                      .++++|-.|.+. ...+..+++.+ ..+.+|+.++.+++..+.+++..+..+   .+.++.+|..+.  +..+.++-  .
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467899999753 24555555543 236799999999877666666665544   357888888642  22221100  0


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      -+.+|+++.++.
T Consensus       106 ~g~iD~lVnnAG  117 (296)
T 3k31_A          106 WGSLDFVVHAVA  117 (296)
T ss_dssp             HSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257899998764

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=87.20  E-value=3.4  Score=35.31  Aligned_cols=84  Identities=18%  Similarity=0.101  Sum_probs=56.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--C
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~  192 (279)
                      ..+++||-.|++ |.++..+++.+. .+.+|+.++.+++.++.+.+.++..+  .++.++.+|..+.  +..+.+.-  .
T Consensus        29 l~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           29 FDGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             STTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            456789988865 556666666542 35799999999988887777776654  3588999998652  22211100  0


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      .+.+|+++.++.
T Consensus       106 ~g~id~lvnnAg  117 (301)
T 3tjr_A          106 LGGVDVVFSNAG  117 (301)
T ss_dssp             HSSCSEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            257999998754

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=86.94  E-value=9.6  Score=31.69  Aligned_cols=110  Identities=14%  Similarity=0.076  Sum_probs=64.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCC-hhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--  191 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s-~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--  191 (279)
                      ..++++|-.|++ |.++..+++.+. .+.+|+.++.. ++..+...+.++..+  .++.++.+|..+.  +..+.++-  
T Consensus        16 l~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   92 (270)
T 3is3_A           16 LDGKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA   92 (270)
T ss_dssp             CTTCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            356788888855 556666666542 35788887764 455555555565544  4588999998652  22211100  


Q ss_pred             CCCcEEEEEEeCCc-----------cch-----------HHHHHHHHccCCCCcEEEEeCC
Q 023645          192 EASSYDFAFVDAEK-----------RMY-----------QEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       192 ~~~~fDlI~id~~~-----------~~~-----------~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .-+..|+++.++..           +.+           ....+.+.+.++++|.||.-..
T Consensus        93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            02578999876431           111           1234455677888887776443

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=86.72  E-value=3.9  Score=37.72  Aligned_cols=104  Identities=11%  Similarity=0.103  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHH---hCC---------CCcEEEEEcChhhHHH
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYER---AGV---------SHKVKIKHGLAADSLK  185 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~---~g~---------~~~v~~~~gd~~~~l~  185 (279)
                      ..++|.-||+|  +.+..++..+.. +.+|+++|.+++.++..++....   .++         ..++++. .|..+.+ 
T Consensus         7 ~~~~I~VIG~G--~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t-td~~~a~-   82 (478)
T 2y0c_A            7 GSMNLTIIGSG--SVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFS-TDIEAAV-   82 (478)
T ss_dssp             CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-CCHHHHH-
T ss_pred             CCceEEEECcC--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEE-CCHHHHh-
Confidence            45689889885  444444433321 45899999999887766542100   010         1123332 2222221 


Q ss_pred             HHHhCCCCCcEEEEEEeCCc----------cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          186 ALILNGEASSYDFAFVDAEK----------RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       186 ~~~~~~~~~~fDlI~id~~~----------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                              ...|+||+..+.          ......++.+.+.|++|.+++....+..|
T Consensus        83 --------~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~g  133 (478)
T 2y0c_A           83 --------AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVG  133 (478)
T ss_dssp             --------HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTT
T ss_pred             --------hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCC
Confidence                    346899886543          45667788888899998877665444444

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=86.41  E-value=7.4  Score=32.33  Aligned_cols=83  Identities=18%  Similarity=0.083  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChh---HHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC-
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDAR---SLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG-  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~---~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~-  191 (279)
                      .++++|-.|++ |.++..+++.+. .+.+|+.++.+..   ..+...+.++..  ..++.++.+|..+.  +..+.++- 
T Consensus        10 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A           10 KNKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            46788888865 556777777653 3568998876543   344444444433  34688999998542  22221100 


Q ss_pred             -CCCcEEEEEEeCC
Q 023645          192 -EASSYDFAFVDAE  204 (279)
Q Consensus       192 -~~~~fDlI~id~~  204 (279)
                       .-+..|+++.++.
T Consensus        87 ~~~g~iD~lvnnAg  100 (262)
T 3ksu_A           87 KEFGKVDIAINTVG  100 (262)
T ss_dssp             HHHCSEEEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence             0257999998754

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=86.38  E-value=4.6  Score=33.55  Aligned_cols=83  Identities=14%  Similarity=0.054  Sum_probs=51.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEE-eCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVAC-ERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--  191 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~i-D~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--  191 (279)
                      ..++++|-.|++ |.++..+++.+. .+.+|+.+ +.+++..+.+.+.++..+  .++.++.+|..+.  +..+.++-  
T Consensus         6 l~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            6 FTNRTIVVAGAG-RDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            356789988865 456666666542 35788887 667776666666665444  4588899998642  22211100  


Q ss_pred             CCCcEEEEEEeC
Q 023645          192 EASSYDFAFVDA  203 (279)
Q Consensus       192 ~~~~fDlI~id~  203 (279)
                      .-+..|+++.++
T Consensus        83 ~~g~id~lv~nA   94 (259)
T 3edm_A           83 KFGEIHGLVHVA   94 (259)
T ss_dssp             HHCSEEEEEECC
T ss_pred             HhCCCCEEEECC
Confidence            025799998765

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=86.13  E-value=1.7  Score=37.18  Aligned_cols=86  Identities=16%  Similarity=0.225  Sum_probs=55.4

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      ++|.-||+  |..+..++..+.. +.+|+++|.+++..+.+.+    .|    +++ ..+    +...     .. .|+|
T Consensus        16 ~~I~vIG~--G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~----~g----~~~-~~~----~~~~-----~~-aDvv   74 (296)
T 3qha_A           16 LKLGYIGL--GNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE----AG----ATL-ADS----VADV-----AA-ADLI   74 (296)
T ss_dssp             CCEEEECC--STTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH----TT----CEE-CSS----HHHH-----TT-SSEE
T ss_pred             CeEEEECc--CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----CC----CEE-cCC----HHHH-----Hh-CCEE
Confidence            47888887  5566666655432 4589999999987665543    23    222 122    2232     24 8999


Q ss_pred             EEeCC-ccchHHHHHHHHccCCCCcEEEE
Q 023645          200 FVDAE-KRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       200 ~id~~-~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |+..+ .......++.+.+.+++|.+++-
T Consensus        75 i~~vp~~~~~~~v~~~l~~~l~~g~ivv~  103 (296)
T 3qha_A           75 HITVLDDAQVREVVGELAGHAKPGTVIAI  103 (296)
T ss_dssp             EECCSSHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             EEECCChHHHHHHHHHHHHhcCCCCEEEE
Confidence            98766 34556677888888998876654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=86.04  E-value=5  Score=34.05  Aligned_cols=107  Identities=17%  Similarity=0.154  Sum_probs=63.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCCh--hHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDA--RSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~--~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--  191 (279)
                      .++++|-.|+ +|.++..+++.+. .+.+|+.++.+.  ...+...+.++..+  .++.++.+|..+.  +..+.++-  
T Consensus        48 ~~k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGG-DSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4678998885 4566777766542 357899988863  34455555555544  4588888888642  11111100  


Q ss_pred             CCCcEEEEEEeCCcc------------c-----------hHHHHHHHHccCCCCcEEEEe
Q 023645          192 EASSYDFAFVDAEKR------------M-----------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       192 ~~~~fDlI~id~~~~------------~-----------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..+.+|+++.++...            .           .....+.+.+.++++|.||.-
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i  184 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT  184 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence            025789998765410            0           112344556778888877763

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=85.98  E-value=1.7  Score=39.45  Aligned_cols=93  Identities=18%  Similarity=0.158  Sum_probs=61.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYD  197 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~fD  197 (279)
                      .+|+=+|+  |..+..+++.+. .+..|+.+|.+++.++.+++    .|    +.++.||+.+.  +...   + -...|
T Consensus         5 ~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~a---g-i~~A~   70 (413)
T 3l9w_A            5 MRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESA---G-AAKAE   70 (413)
T ss_dssp             CSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHT---T-TTTCS
T ss_pred             CeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhc---C-CCccC
Confidence            46777776  667777666553 24689999999998877653    23    56788998652  3322   1 36789


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +|++..+.......+-...+.+.|...+++
T Consensus        71 ~viv~~~~~~~n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           71 VLINAIDDPQTNLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EEEECCCChHHHHHHHHHHHHhCCCCeEEE
Confidence            988866544444444555667778866665

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=85.98  E-value=0.49  Score=39.43  Aligned_cols=87  Identities=15%  Similarity=0.245  Sum_probs=52.2

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-CC----EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE-SG----CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~-~~----~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ++|.-||+  |..+..++..+.. +.    +|+.+|.+++..+...+.+   |.    .. ..+..+.+         ..
T Consensus         3 ~~i~iIG~--G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~---g~----~~-~~~~~e~~---------~~   63 (247)
T 3gt0_A            3 KQIGFIGC--GNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY---GL----TT-TTDNNEVA---------KN   63 (247)
T ss_dssp             CCEEEECC--SHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH---CC----EE-CSCHHHHH---------HH
T ss_pred             CeEEEECc--cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh---CC----EE-eCChHHHH---------Hh
Confidence            36777887  4555555544321 22    7999999998766554432   32    22 22332222         34


Q ss_pred             EEEEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      .|+||+-.......+.++.+.+.+++|.+++
T Consensus        64 aDvVilav~~~~~~~v~~~l~~~l~~~~~vv   94 (247)
T 3gt0_A           64 ADILILSIKPDLYASIINEIKEIIKNDAIIV   94 (247)
T ss_dssp             CSEEEECSCTTTHHHHC---CCSSCTTCEEE
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence            7999988776677778888888888887666

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=85.87  E-value=1  Score=39.58  Aligned_cols=101  Identities=13%  Similarity=0.065  Sum_probs=54.4

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEE-EEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH-HHHHHhCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNG  191 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~-~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~~~~~~  191 (279)
                      ...++++||-+|+  +.|..+..+++..+  ++++ .++.++...+ ..+.++..|..   .++.  ..+. ...+.+..
T Consensus       164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~~~-~~~~~~~lGa~---~vi~--~~~~~~~~~~~~~  235 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGVGQAVIQIAAALG--LRTINVVRDRPDIQK-LSDRLKSLGAE---HVIT--EEELRRPEMKNFF  235 (357)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEECCCSCHHH-HHHHHHHTTCS---EEEE--HHHHHSGGGGGTT
T ss_pred             ccCCCCEEEEeCCcCHHHHHHHHHHHHcC--CEEEEEecCccchHH-HHHHHHhcCCc---EEEe--cCcchHHHHHHHH
Confidence            4557789999996  46777888888763  5554 4555443211 12233445643   2221  1110 01111110


Q ss_pred             CC-CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          192 EA-SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       192 ~~-~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .. +.+|+||-.....    ....+.+.|++||.++.-
T Consensus       236 ~~~~~~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~  269 (357)
T 1zsy_A          236 KDMPQPRLALNCVGGK----SSTELLRQLARGGTMVTY  269 (357)
T ss_dssp             SSSCCCSEEEESSCHH----HHHHHHTTSCTTCEEEEC
T ss_pred             hCCCCceEEEECCCcH----HHHHHHHhhCCCCEEEEE
Confidence            01 2589887544322    224578999999999874

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=85.77  E-value=3.7  Score=34.49  Aligned_cols=82  Identities=20%  Similarity=0.096  Sum_probs=57.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HH----HHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK----ALILN  190 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~----~~~~~  190 (279)
                      .+++.+|--|.+.| .+..+++.+ ..+++|+.+|.+++.++.+.+.++..|.  ++.++.+|..+.  ..    ...+.
T Consensus         5 L~gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            5 LKNKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             GTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46788888886655 566666554 2468999999999998888888877663  588899998642  11    11111


Q ss_pred             CCCCcEEEEEEeCC
Q 023645          191 GEASSYDFAFVDAE  204 (279)
Q Consensus       191 ~~~~~fDlI~id~~  204 (279)
                        -++.|+++.++.
T Consensus        82 --~G~iDiLVNNAG   93 (254)
T 4fn4_A           82 --YSRIDVLCNNAG   93 (254)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --cCCCCEEEECCc
Confidence              268999987653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=85.75  E-value=7.8  Score=31.96  Aligned_cols=82  Identities=17%  Similarity=0.089  Sum_probs=53.3

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HH----HHHh
Q 023645          118 LGAQRCIEVGVY-TGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK----ALIL  189 (279)
Q Consensus       118 ~~~~~VLEiG~G-~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~----~~~~  189 (279)
                      ...++||-.|++ +|.++..+++.+. .+.+|+.++.++...+.+++..+..+   ++.++.+|..+.  +.    ...+
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHH
Confidence            457799999974 3556666665542 35799999998776666666555543   377888888642  22    2211


Q ss_pred             CCCCCcEEEEEEeCC
Q 023645          190 NGEASSYDFAFVDAE  204 (279)
Q Consensus       190 ~~~~~~fDlI~id~~  204 (279)
                      .  .+++|+++.++.
T Consensus        89 ~--~g~id~lv~nAg  101 (271)
T 3ek2_A           89 H--WDSLDGLVHSIG  101 (271)
T ss_dssp             H--CSCEEEEEECCC
T ss_pred             H--cCCCCEEEECCc
Confidence            1  258999997654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=85.66  E-value=0.98  Score=40.55  Aligned_cols=42  Identities=19%  Similarity=0.198  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHH
Q 023645          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (279)
Q Consensus       119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (279)
                      ++.+|+-||+|. |..+..++..+  +++|+++|.+++..+.+++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~  225 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRS  225 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            678999999973 44555566665  4799999999988776654

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=85.52  E-value=8.1  Score=32.33  Aligned_cols=108  Identities=17%  Similarity=0.075  Sum_probs=63.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCCh-hHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--  191 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~-~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--  191 (279)
                      ..++++|-.|++ |.++..+++.+. .+.+|+.++... +..+...+.++..+  .++.++.+|..+.  +..+.++-  
T Consensus        29 l~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (271)
T 3v2g_A           29 LAGKTAFVTGGS-RGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVE  105 (271)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            356789988865 556666666542 357888886653 55555555555544  3588899998642  12211100  


Q ss_pred             CCCcEEEEEEeCCc-----------cc-----------hHHHHHHHHccCCCCcEEEEe
Q 023645          192 EASSYDFAFVDAEK-----------RM-----------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       192 ~~~~fDlI~id~~~-----------~~-----------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..++.|+++.++..           +.           .....+.+.+.++++|.||.-
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i  164 (271)
T 3v2g_A          106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI  164 (271)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            02578999876531           01           112344456777788877663

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=85.42  E-value=4.3  Score=34.00  Aligned_cols=86  Identities=15%  Similarity=0.135  Sum_probs=53.9

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      +|.=||+  |..+..++..+. .+.+|+++|.+++..+.++    ..|...  .+ ..+..+.          ...|+|+
T Consensus         2 ~i~iiG~--G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~----~~g~~~--~~-~~~~~~~----------~~~D~vi   62 (279)
T 2f1k_A            2 KIGVVGL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV----ERQLVD--EA-GQDLSLL----------QTAKIIF   62 (279)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HTTSCS--EE-ESCGGGG----------TTCSEEE
T ss_pred             EEEEEcC--cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----hCCCCc--cc-cCCHHHh----------CCCCEEE
Confidence            5777887  555555554432 1358999999988765543    234322  11 2232211          3579999


Q ss_pred             EeCCccchHHHHHHHHccCCCCcEEE
Q 023645          201 VDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       201 id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      +..+.......++.+.+.+++|.+++
T Consensus        63 ~av~~~~~~~~~~~l~~~~~~~~~vv   88 (279)
T 2f1k_A           63 LCTPIQLILPTLEKLIPHLSPTAIVT   88 (279)
T ss_dssp             ECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             EECCHHHHHHHHHHHHhhCCCCCEEE
Confidence            88776667778888888888877554

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=85.03  E-value=2.5  Score=34.49  Aligned_cols=93  Identities=10%  Similarity=0.111  Sum_probs=57.1

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-C-CEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE-S-GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY  196 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~-~-~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~f  196 (279)
                      ++||-.| |+|..+..+++.+-. + .+|++++.+++....        -...+++++.+|..+.  +....     ..+
T Consensus        24 k~vlVtG-atG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~--------~~~~~~~~~~~Dl~d~~~~~~~~-----~~~   89 (236)
T 3qvo_A           24 KNVLILG-AGGQIARHVINQLADKQTIKQTLFARQPAKIHK--------PYPTNSQIIMGDVLNHAALKQAM-----QGQ   89 (236)
T ss_dssp             EEEEEET-TTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS--------SCCTTEEEEECCTTCHHHHHHHH-----TTC
T ss_pred             cEEEEEe-CCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc--------cccCCcEEEEecCCCHHHHHHHh-----cCC
Confidence            4788777 568888888877643 4 589999998764321        1123689999998652  33332     467


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCC--cEEEE
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVG--GIIVI  227 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~g--G~lv~  227 (279)
                      |.||............+.+.+.++..  |.||.
T Consensus        90 D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV~  122 (236)
T 3qvo_A           90 DIVYANLTGEDLDIQANSVIAAMKACDVKRLIF  122 (236)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEcCCCCchhHHHHHHHHHHHHcCCCEEEE
Confidence            99998776544333334444443332  44443

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=85.03  E-value=3  Score=36.31  Aligned_cols=97  Identities=12%  Similarity=0.142  Sum_probs=57.7

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHH----hCCCCcEE--EEEcChhhHHHHHHhCCCC
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYER----AGVSHKVK--IKHGLAADSLKALILNGEA  193 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~----~g~~~~v~--~~~gd~~~~l~~~~~~~~~  193 (279)
                      ++|.=||+|  ..+..++..+. .+.+|+.+|.+++..+..++....    .+......  ....+    +...     -
T Consensus         5 mki~iiG~G--~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~   73 (359)
T 1bg6_A            5 KTYAVLGLG--NGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSD----IGLA-----V   73 (359)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESC----HHHH-----H
T ss_pred             CeEEEECCC--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCC----HHHH-----H
Confidence            589999885  45544444332 145899999998876655442100    00000000  11122    2221     1


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..+|+||+........+.++.+.+.+++|.+++..
T Consensus        74 ~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           74 KDADVILIVVPAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             hcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence            46899999887666778888888999998766653

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=85.02  E-value=6.7  Score=35.16  Aligned_cols=98  Identities=9%  Similarity=0.168  Sum_probs=58.2

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHH------------HHhCCCCcEEEEEcChhhHHHHHHh
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY------------ERAGVSHKVKIKHGLAADSLKALIL  189 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~------------~~~g~~~~v~~~~gd~~~~l~~~~~  189 (279)
                      +|.-||+  |+.+..++..+..+.+|+++|.+++.++..++..            .. . ..++.+. .+..+.+     
T Consensus         2 kI~VIG~--G~vG~~~A~~La~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~-~-~~~l~~t-~~~~~~~-----   71 (402)
T 1dlj_A            2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS-K-QLSIKAT-LDSKAAY-----   71 (402)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-S-CCCEEEE-SCHHHHH-----
T ss_pred             EEEEECC--CHHHHHHHHHHhCCCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHh-c-cCcEEEe-CCHHHHh-----
Confidence            5666776  7777777776654568999999998766543210            00 0 1122221 2222221     


Q ss_pred             CCCCCcEEEEEEeCCcc-----------chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          190 NGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       190 ~~~~~~fDlI~id~~~~-----------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                          ...|+||+..+..           ...+.++.+.+ +++|.+++.......|
T Consensus        72 ----~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g  122 (402)
T 1dlj_A           72 ----KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIG  122 (402)
T ss_dssp             ----HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTT
T ss_pred             ----cCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCcc
Confidence                3468998865433           36677777888 8888877764444443

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=84.95  E-value=3.9  Score=34.14  Aligned_cols=83  Identities=12%  Similarity=0.018  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCc
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~  195 (279)
                      .++++|-.|++ |.++..+++.+. .+.+|+.++.+++..+...+.+...+....+.++.+|..+.  +..+.+.  -+.
T Consensus         9 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~g~   85 (267)
T 3t4x_A            9 KGKTALVTGST-AGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK--YPK   85 (267)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH--CCC
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh--cCC
Confidence            46788888854 566666666542 36799999999988777766666655445678888888642  2333222  357


Q ss_pred             EEEEEEeCC
Q 023645          196 YDFAFVDAE  204 (279)
Q Consensus       196 fDlI~id~~  204 (279)
                      +|+++.++.
T Consensus        86 id~lv~nAg   94 (267)
T 3t4x_A           86 VDILINNLG   94 (267)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899987654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=84.83  E-value=2.1  Score=34.41  Aligned_cols=86  Identities=12%  Similarity=0.164  Sum_probs=53.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC--CCCEEEEEeCChh-HHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCc
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~--~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~  195 (279)
                      ++||-.| |+|..+..+++.+.  .+.+|++++.+++ ..+...    ..  ..++.++.+|..+.  +....     ..
T Consensus         6 k~vlVtG-asg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~~D~~d~~~~~~~~-----~~   73 (221)
T 3r6d_A            6 XYITILG-AAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----ID--HERVTVIEGSFQNPGXLEQAV-----TN   73 (221)
T ss_dssp             SEEEEES-TTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----HT--STTEEEEECCTTCHHHHHHHH-----TT
T ss_pred             EEEEEEe-CCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----cC--CCceEEEECCCCCHHHHHHHH-----cC
Confidence            4688888 56777777776543  4679999999876 432221    11  23589999998752  33332     46


Q ss_pred             EEEEEEeCCccchHHHHHHHHccCC
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQLIR  220 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~Lk  220 (279)
                      +|+||......+..  .+.+.+.++
T Consensus        74 ~d~vv~~ag~~n~~--~~~~~~~~~   96 (221)
T 3r6d_A           74 AEVVFVGAMESGSD--MASIVKALS   96 (221)
T ss_dssp             CSEEEESCCCCHHH--HHHHHHHHH
T ss_pred             CCEEEEcCCCCChh--HHHHHHHHH
Confidence            89999877643332  344444443

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=84.67  E-value=4.1  Score=34.09  Aligned_cols=86  Identities=16%  Similarity=0.160  Sum_probs=56.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--C
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~  192 (279)
                      ..+++||-.|+ +|..+..+++.+. .+.+|+.++.+++..+...+.++..+...++.++.+|..+.  +..+.+.-  .
T Consensus        30 l~~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           30 WRDRLALVTGA-SGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             GTTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            35678888884 5677777776542 35799999999887776666666666555688889998642  22211100  0


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      .+.+|+||..+.
T Consensus       109 ~g~iD~vi~~Ag  120 (279)
T 1xg5_A          109 HSGVDICINNAG  120 (279)
T ss_dssp             HCCCSEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            147899987654

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=84.58  E-value=4.5  Score=35.64  Aligned_cols=71  Identities=15%  Similarity=0.124  Sum_probs=47.9

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh--HHHHHHhCCCCCcEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASSYD  197 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~~~~~~~~~~fD  197 (279)
                      .++|+-+||  |..+..+++.+.....|+..|.+.+.++.+++         .+..+..|+.+  .+..+.     .+.|
T Consensus        16 ~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~d~~d~~~l~~~~-----~~~D   79 (365)
T 3abi_A           16 HMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE---------FATPLKVDASNFDKLVEVM-----KEFE   79 (365)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT---------TSEEEECCTTCHHHHHHHH-----TTCS
T ss_pred             ccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc---------cCCcEEEecCCHHHHHHHH-----hCCC
Confidence            458999998  77777777777667899999999877655432         24455566643  344432     5679


Q ss_pred             EEEEeCCcc
Q 023645          198 FAFVDAEKR  206 (279)
Q Consensus       198 lI~id~~~~  206 (279)
                      +|+.-.+..
T Consensus        80 vVi~~~p~~   88 (365)
T 3abi_A           80 LVIGALPGF   88 (365)
T ss_dssp             EEEECCCGG
T ss_pred             EEEEecCCc
Confidence            888765533

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=84.43  E-value=1.2  Score=49.46  Aligned_cols=103  Identities=9%  Similarity=0.078  Sum_probs=65.6

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...++.+||-.|.  |.|..++.+++..  +++|++++.+++..+.+++.+...|...   ++...-.++...+....+.
T Consensus      1664 ~l~~Ge~VLI~gaaGgVG~aAiqlAk~~--Ga~Viat~~s~~k~~~l~~~~~~lga~~---v~~~~~~~~~~~i~~~t~g 1738 (2512)
T 2vz8_A         1664 RMQPGESVLIHSGSGGVGQAAIAIALSR--GCRVFTTVGSAEKRAYLQARFPQLDETC---FANSRDTSFEQHVLRHTAG 1738 (2512)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTCCSTT---EEESSSSHHHHHHHHTTTS
T ss_pred             cCCCCCEEEEEeCChHHHHHHHHHHHHc--CCEEEEEeCChhhhHHHHhhcCCCCceE---EecCCCHHHHHHHHHhcCC
Confidence            3457789999864  4566777788876  4799999999888777766443233322   1211112223333222123


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ..+|+|+-...    ...++...+.|++||.++.
T Consensus      1739 ~GvDvVld~~g----~~~l~~~l~~L~~~Gr~V~ 1768 (2512)
T 2vz8_A         1739 KGVDLVLNSLA----EEKLQASVRCLAQHGRFLE 1768 (2512)
T ss_dssp             CCEEEEEECCC----HHHHHHHHTTEEEEEEEEE
T ss_pred             CCceEEEECCC----chHHHHHHHhcCCCcEEEE
Confidence            46999885432    3568889999999998876

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.37  E-value=4.2  Score=37.29  Aligned_cols=72  Identities=19%  Similarity=0.264  Sum_probs=50.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh--HHHHHHhCCCCCcE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASSY  196 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~~~~~~~~~~f  196 (279)
                      .++|+=+||  |..+..+++.+.. +..|+.+|.+++.++.+.+.+       .+..++||+.+  .+...    +-+..
T Consensus         3 ~M~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~A----gi~~a   69 (461)
T 4g65_A            3 AMKIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEA----GAQDA   69 (461)
T ss_dssp             CEEEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHH----TTTTC
T ss_pred             cCEEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhc----CCCcC
Confidence            457777666  7888889988753 457999999999887665543       26788999865  33332    14678


Q ss_pred             EEEEEeCC
Q 023645          197 DFAFVDAE  204 (279)
Q Consensus       197 DlI~id~~  204 (279)
                      |+++.-.+
T Consensus        70 d~~ia~t~   77 (461)
T 4g65_A           70 DMLVAVTN   77 (461)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEEcC
Confidence            88876443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=83.90  E-value=2.8  Score=38.93  Aligned_cols=88  Identities=10%  Similarity=0.076  Sum_probs=53.2

Q ss_pred             hcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          117 ILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       117 ~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...+++|+-+|+|. |......++.+  +.+|+++|.++...+.+++    .|.    ++  .+..+    .     -..
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e----~-----l~~  329 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMM----EGF----DV--VTVEE----A-----IGD  329 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----EE--CCHHH----H-----GGG
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC----EE--ecHHH----H-----HhC
Confidence            35678999999852 33333444444  4699999999987655543    343    22  23222    2     246


Q ss_pred             EEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .|+|+.........  -....+.+|+||+++.
T Consensus       330 aDvVi~atgt~~~i--~~~~l~~mk~ggilvn  359 (494)
T 3ce6_A          330 ADIVVTATGNKDII--MLEHIKAMKDHAILGN  359 (494)
T ss_dssp             CSEEEECSSSSCSB--CHHHHHHSCTTCEEEE
T ss_pred             CCEEEECCCCHHHH--HHHHHHhcCCCcEEEE
Confidence            79998765433211  1245677899998875

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=83.85  E-value=7.4  Score=32.31  Aligned_cols=81  Identities=17%  Similarity=0.122  Sum_probs=55.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HH----HHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK----ALILN  190 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~----~~~~~  190 (279)
                      ..++++|-.|++.| ++..+++.+ ..+.+|+.++.+++..+.+.+.+...+  .++.++.+|..+.  +.    ...+.
T Consensus         9 l~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A            9 LTDKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTTCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45678998887654 555555544 236799999999988877777776654  4588999998652  22    22111


Q ss_pred             CCCCcEEEEEEeC
Q 023645          191 GEASSYDFAFVDA  203 (279)
Q Consensus       191 ~~~~~fDlI~id~  203 (279)
                        .+++|+++.++
T Consensus        86 --~g~id~lv~nA   96 (264)
T 3ucx_A           86 --YGRVDVVINNA   96 (264)
T ss_dssp             --TSCCSEEEECC
T ss_pred             --cCCCcEEEECC
Confidence              25799998775

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=83.49  E-value=5.7  Score=33.11  Aligned_cols=78  Identities=22%  Similarity=0.205  Sum_probs=46.7

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC--CCCEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCcEEEEEc
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG  178 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~--~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~g  178 (279)
                      ..+|+-+|||  ..+..++..+.  .-++++.+|.+.                   ...+.+++.+...+..-+++.+..
T Consensus        31 ~~~VlVvG~G--g~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  108 (249)
T 1jw9_B           31 DSRVLIVGLG--GLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  108 (249)
T ss_dssp             HCEEEEECCS--HHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             CCeEEEEeeC--HHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence            3589999996  33333333221  025999999987                   667777777776554334566554


Q ss_pred             Chhh-HHHHHHhCCCCCcEEEEEEeCC
Q 023645          179 LAAD-SLKALILNGEASSYDFAFVDAE  204 (279)
Q Consensus       179 d~~~-~l~~~~~~~~~~~fDlI~id~~  204 (279)
                      +..+ .+..+     -..+|+|+...+
T Consensus       109 ~~~~~~~~~~-----~~~~DvVi~~~d  130 (249)
T 1jw9_B          109 LLDDAELAAL-----IAEHDLVLDCTD  130 (249)
T ss_dssp             CCCHHHHHHH-----HHTSSEEEECCS
T ss_pred             cCCHhHHHHH-----HhCCCEEEEeCC
Confidence            4432 22222     146899986554

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=83.48  E-value=1.3  Score=40.07  Aligned_cols=42  Identities=19%  Similarity=0.200  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHH
Q 023645          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (279)
Q Consensus       119 ~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (279)
                      ++.+|+-+|+|. |..+..++..+  +++|+.+|.++...+.+++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence            578999999973 55555666666  4799999999988776654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=82.98  E-value=7.8  Score=32.08  Aligned_cols=85  Identities=13%  Similarity=0.025  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--CC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~~  193 (279)
                      .++++|-.|+ +|..+..+++.+. .+.+|+.++.+++..+.+.+.+.......++.++.+|..+.  +....+.-  ..
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGA-AQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            4568888885 5667777766542 35799999999876655444443211123588899998642  22211100  02


Q ss_pred             CcEEEEEEeCC
Q 023645          194 SSYDFAFVDAE  204 (279)
Q Consensus       194 ~~fDlI~id~~  204 (279)
                      +++|+++..+.
T Consensus        85 g~id~lv~~Ag   95 (267)
T 2gdz_A           85 GRLDILVNNAG   95 (267)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            46899988764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=82.97  E-value=5.6  Score=33.39  Aligned_cols=82  Identities=16%  Similarity=0.064  Sum_probs=56.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILN  190 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~~  190 (279)
                      ..++.+|--|.+. .++..+++.+. .+++|+.+|.+++.++.+.+.+...|.  ++..+.+|..+.      .....+.
T Consensus         7 L~gKvalVTGas~-GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (255)
T 4g81_D            7 LTGKTALVTGSAR-GLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAE   83 (255)
T ss_dssp             CTTCEEEETTCSS-HHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            3577888878654 45666666553 367999999999988887777776653  588888887542      2222222


Q ss_pred             CCCCcEEEEEEeCC
Q 023645          191 GEASSYDFAFVDAE  204 (279)
Q Consensus       191 ~~~~~fDlI~id~~  204 (279)
                        -++.|+++.++.
T Consensus        84 --~G~iDiLVNNAG   95 (255)
T 4g81_D           84 --GIHVDILINNAG   95 (255)
T ss_dssp             --TCCCCEEEECCC
T ss_pred             --CCCCcEEEECCC
Confidence              368999987653

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=82.95  E-value=4  Score=34.50  Aligned_cols=89  Identities=17%  Similarity=0.193  Sum_probs=54.2

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC---CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .++|.=||+|  ..+..++..+.   .+.+|+++|.+++..+.+++    .|...  . ...+..+.         -...
T Consensus         6 ~~~I~iIG~G--~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~--~-~~~~~~~~---------~~~a   67 (290)
T 3b1f_A            6 EKTIYIAGLG--LIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD--E-ATADFKVF---------AALA   67 (290)
T ss_dssp             CCEEEEECCS--HHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS--E-EESCTTTT---------GGGC
T ss_pred             cceEEEEeeC--HHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc--c-ccCCHHHh---------hcCC
Confidence            3578888875  44444443321   13589999999877655433    34321  1 12222211         1357


Q ss_pred             EEEEEeCCccchHHHHHHHHcc-CCCCcEEE
Q 023645          197 DFAFVDAEKRMYQEYFELLLQL-IRVGGIIV  226 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~-Lk~gG~lv  226 (279)
                      |+||+..+.......++.+.+. +++|.+++
T Consensus        68 DvVilavp~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           68 DVIILAVPIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             SEEEECSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             CEEEEcCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence            9999887766667788888888 88876555

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=82.89  E-value=7.1  Score=32.84  Aligned_cols=81  Identities=19%  Similarity=0.136  Sum_probs=49.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--C
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~  192 (279)
                      ..++++|-.|++. .++..+++.+ ..+.+|+.+|.+++..+.+.+.+   +  .++.++.+|..+.  +..+.++-  .
T Consensus        27 l~gk~vlVTGas~-gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (277)
T 3gvc_A           27 LAGKVAIVTGAGA-GIGLAVARRLADEGCHVLCADIDGDAADAAATKI---G--CGAAACRVDVSDEQQIIAMVDACVAA  100 (277)
T ss_dssp             CTTCEEEETTTTS-THHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C--SSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C--CcceEEEecCCCHHHHHHHHHHHHHH
Confidence            3567888888654 4555555544 23679999999987765554433   2  3578888888652  11111100  0


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      -+.+|+++.++.
T Consensus       101 ~g~iD~lvnnAg  112 (277)
T 3gvc_A          101 FGGVDKLVANAG  112 (277)
T ss_dssp             HSSCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257899987654

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=82.75  E-value=1.1  Score=40.02  Aligned_cols=79  Identities=15%  Similarity=0.099  Sum_probs=46.9

Q ss_pred             cCCCEEEEEcCccC---HHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTG---YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G---~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      .++.+||-+|.|+|   ..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+.....   ..
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~v~~~t~---~~  239 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKD--GIKLVNIVRKQEQADLLKA----QGAVHVCNAASPTFMQDLTEALV---ST  239 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHH----TTCSCEEETTSTTHHHHHHHHHH---HH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCCcEEEeCCChHHHHHHHHHhc---CC
Confidence            56778998865544   4555666665  4689999999988877764    45443222222333333333211   23


Q ss_pred             cEEEEEEeCCc
Q 023645          195 SYDFAFVDAEK  205 (279)
Q Consensus       195 ~fDlI~id~~~  205 (279)
                      .+|+||-....
T Consensus       240 g~d~v~d~~g~  250 (379)
T 3iup_A          240 GATIAFDATGG  250 (379)
T ss_dssp             CCCEEEESCEE
T ss_pred             CceEEEECCCc
Confidence            69988855443

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=82.71  E-value=1.2  Score=40.13  Aligned_cols=42  Identities=14%  Similarity=0.207  Sum_probs=30.9

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHH
Q 023645          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAK  161 (279)
Q Consensus       118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~  161 (279)
                      .++.+|+-+|+|. |..+..++..++  .+|+.+|.+++..+.++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~  212 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQ  212 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH
Confidence            4678999999863 444555666664  69999999998776653

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=82.60  E-value=5.7  Score=32.76  Aligned_cols=85  Identities=16%  Similarity=0.037  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhH--HHHHHhCC--C
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS--LKALILNG--E  192 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~--l~~~~~~~--~  192 (279)
                      .++++|-.|++ |..+..+++.+. .+.+|+.++.+++..+.+.+.+...+.. .++.++.+|..+.  ...+.++-  .
T Consensus         6 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            6 QKGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            46788888865 555666665542 2579999999998887777766654322 4588888988652  11111100  0


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      .+.+|+++.++.
T Consensus        85 ~g~iD~lvnnAg   96 (250)
T 3nyw_A           85 YGAVDILVNAAA   96 (250)
T ss_dssp             HCCEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257999998764

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=82.39  E-value=3.4  Score=37.08  Aligned_cols=45  Identities=18%  Similarity=0.071  Sum_probs=35.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC------CCCEEEEEeCChhHHHHHHHHHH
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP------ESGCLVACERDARSLEVAKKYYE  165 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~------~~~~v~~iD~s~~~~~~a~~~~~  165 (279)
                      -.|+|+|.|.|..+.-+++.+.      ...+++.||+|+...+.-++.+.
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            3799999999999988876542      23589999999988776555553

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=82.21  E-value=6.2  Score=32.81  Aligned_cols=85  Identities=14%  Similarity=0.099  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--CC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~~  193 (279)
                      .++++|-.|++ |.++..+++.+. .+.+|+.++.+++..+.+.+.+....-..++.++.+|..+.  ...+.+.-  .-
T Consensus         7 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGS-SGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            46788888865 456666665542 36799999999988877776666532233488999998652  11111100  02


Q ss_pred             CcEEEEEEeCC
Q 023645          194 SSYDFAFVDAE  204 (279)
Q Consensus       194 ~~fDlI~id~~  204 (279)
                      ++.|+++.++.
T Consensus        86 g~id~lvnnAg   96 (265)
T 3lf2_A           86 GCASILVNNAG   96 (265)
T ss_dssp             CSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57899987654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=82.19  E-value=1.8  Score=36.83  Aligned_cols=87  Identities=18%  Similarity=0.125  Sum_probs=53.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      ++|.=||+  |..+..++..+. .+.+|+++|.+++..+.+.+.    |    +.. ..+..+..         ...|+|
T Consensus         2 ~~i~iIG~--G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~----g----~~~-~~~~~~~~---------~~aDvv   61 (287)
T 3pef_A            2 QKFGFIGL--GIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAAL----G----AER-AATPCEVV---------ESCPVT   61 (287)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT----T----CEE-CSSHHHHH---------HHCSEE
T ss_pred             CEEEEEee--cHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC----C----Cee-cCCHHHHH---------hcCCEE
Confidence            46777887  556666555442 246899999999876655432    2    222 12333222         245899


Q ss_pred             EEeCC-ccchHHHH---HHHHccCCCCcEEEE
Q 023645          200 FVDAE-KRMYQEYF---ELLLQLIRVGGIIVI  227 (279)
Q Consensus       200 ~id~~-~~~~~~~l---~~~~~~Lk~gG~lv~  227 (279)
                      |+..+ .......+   +.+.+.+++|.+++-
T Consensus        62 i~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~   93 (287)
T 3pef_A           62 FAMLADPAAAEEVCFGKHGVLEGIGEGRGYVD   93 (287)
T ss_dssp             EECCSSHHHHHHHHHSTTCHHHHCCTTCEEEE
T ss_pred             EEEcCCHHHHHHHHcCcchHhhcCCCCCEEEe
Confidence            88766 34555666   667788888876553

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=82.03  E-value=7.6  Score=32.05  Aligned_cols=83  Identities=16%  Similarity=0.167  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC-CCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG-EAS  194 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~-~~~  194 (279)
                      .++++|-.|++ |.++..+++.+. .+.+|+.++.+++..+.+.+.++..+  .++.++.+|..+.  +..+.+.- +.+
T Consensus         6 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            6 RNATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             CSCEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            46788888865 556666666542 35799999999988887777776654  4689999998652  22221110 015


Q ss_pred             cEEEEEEeCC
Q 023645          195 SYDFAFVDAE  204 (279)
Q Consensus       195 ~fDlI~id~~  204 (279)
                      .+|+++.++.
T Consensus        83 ~id~lv~nAg   92 (252)
T 3h7a_A           83 PLEVTIFNVG   92 (252)
T ss_dssp             CEEEEEECCC
T ss_pred             CceEEEECCC
Confidence            7999987754

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=81.98  E-value=1.1  Score=38.01  Aligned_cols=39  Identities=23%  Similarity=0.455  Sum_probs=27.4

Q ss_pred             CcEEEEEEeCC----ccchHHHH----------HHHHccCCCCcEEEEeCCCC
Q 023645          194 SSYDFAFVDAE----KRMYQEYF----------ELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       194 ~~fDlI~id~~----~~~~~~~l----------~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      ++||+||++..    .++|.+.-          ..+...|+|||.+++...-+
T Consensus       210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGy  262 (324)
T 3trk_A          210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGY  262 (324)
T ss_dssp             CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCC
T ss_pred             CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecc
Confidence            89999999865    33343322          23358899999999976644

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=81.85  E-value=17  Score=28.55  Aligned_cols=68  Identities=15%  Similarity=0.017  Sum_probs=46.1

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      +||-+| |+|..+..+++.+- .+.+|++++.+++.....       .  ..++++.+|..+.....     -..+|.||
T Consensus         2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~--~~~~~~~~D~~d~~~~~-----~~~~d~vi   66 (221)
T 3ew7_A            2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-------H--KDINILQKDIFDLTLSD-----LSDQNVVV   66 (221)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH-------C--SSSEEEECCGGGCCHHH-----HTTCSEEE
T ss_pred             eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc-------c--CCCeEEeccccChhhhh-----hcCCCEEE
Confidence            678777 56777877776652 357999999998654321       1  35899999987642222     25689998


Q ss_pred             EeCC
Q 023645          201 VDAE  204 (279)
Q Consensus       201 id~~  204 (279)
                      ..+.
T Consensus        67 ~~ag   70 (221)
T 3ew7_A           67 DAYG   70 (221)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            7654

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=81.67  E-value=2  Score=39.42  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=57.2

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHH------------HHHhCCCCcEEEEEcChhhHHHHH
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKY------------YERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~------------~~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      .+|--||+  |+.++.++..+. .+.+|+|+|++++.++..++.            +++.--..++++. .|..+.+   
T Consensus        22 ~~IaViGl--GYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~t-t~~~~ai---   95 (444)
T 3vtf_A           22 ASLSVLGL--GYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFA-ESAEEAV---   95 (444)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEC-SSHHHHH---
T ss_pred             CEEEEEcc--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEE-cCHHHHH---
Confidence            37777776  666655544432 246999999999887665431            1111001223332 2222211   


Q ss_pred             HhCCCCCcEEEEEEeCC----------ccchHHHHHHHHccCCC---CcEEEEeCCCCCCc
Q 023645          188 ILNGEASSYDFAFVDAE----------KRMYQEYFELLLQLIRV---GGIIVIDNVLWHGK  235 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~----------~~~~~~~l~~~~~~Lk~---gG~lv~dd~~~~g~  235 (279)
                            ..-|++|+..+          ........+.+.+.|++   |-++|+.....+|.
T Consensus        96 ------~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGt  150 (444)
T 3vtf_A           96 ------AATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGT  150 (444)
T ss_dssp             ------HTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTT
T ss_pred             ------hcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCch
Confidence                  23466666432          12244556666777774   45888888888886

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=81.64  E-value=7.7  Score=32.38  Aligned_cols=83  Identities=20%  Similarity=0.133  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEE-eCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--C
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVAC-ERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~i-D~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~  192 (279)
                      .++++|-.|++ |.++..+++.+. .+.+|+.+ ..+++..+...+.++..+  .++.++.+|..+.  +..+.++-  .
T Consensus        26 ~~k~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           26 TNKVAIVTGAS-RGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             -CCEEEEESCS-SHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46788888865 555666655542 25688776 445556666666565544  3588889988642  22211100  0


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      .+.+|+++.++.
T Consensus       103 ~g~iD~lvnnAG  114 (267)
T 3u5t_A          103 FGGVDVLVNNAG  114 (267)
T ss_dssp             HSCEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            258999988754

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=81.62  E-value=1.5  Score=37.57  Aligned_cols=34  Identities=9%  Similarity=0.066  Sum_probs=27.1

Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ..+|+||+........+.++.+.+.++++.+++.
T Consensus        82 ~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~  115 (317)
T 2qyt_A           82 GTVDYILFCTKDYDMERGVAEIRPMIGQNTKILP  115 (317)
T ss_dssp             CCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEE
Confidence            5799999987766778888888888888776554

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=81.57  E-value=3.5  Score=35.94  Aligned_cols=77  Identities=16%  Similarity=0.146  Sum_probs=52.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCC--CC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPE--SG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGE  192 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~--~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~  192 (279)
                      ...++||-.| |+|..+..+++.+-.  +. +|++++.++.......+.+.    ..+++++.+|..+.  +...     
T Consensus        19 ~~~k~vlVTG-atG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~-----   88 (344)
T 2gn4_A           19 LDNQTILITG-GTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRDLERLNYA-----   88 (344)
T ss_dssp             TTTCEEEEET-TTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTCHHHHHHH-----
T ss_pred             hCCCEEEEEC-CCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCCHHHHHHH-----
Confidence            4567899887 578888888776532  34 89999998876554444332    24689999998753  3333     


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      -..+|.||..+.
T Consensus        89 ~~~~D~Vih~Aa  100 (344)
T 2gn4_A           89 LEGVDICIHAAA  100 (344)
T ss_dssp             TTTCSEEEECCC
T ss_pred             HhcCCEEEECCC
Confidence            246899998765

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=81.51  E-value=8.3  Score=31.42  Aligned_cols=81  Identities=14%  Similarity=0.124  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HH----HHHhCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK----ALILNG  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~----~~~~~~  191 (279)
                      .++++|-.|+ +|..+..+++.+. .+.+|+.++.+++..+...+.++..+  .++.++.+|..+.  +.    ..... 
T Consensus         4 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~-   79 (247)
T 3lyl_A            4 NEKVALVTGA-SRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAE-   79 (247)
T ss_dssp             TTCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHT-
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH-
Confidence            3567888774 5666666666542 35799999999988877777776655  3589999998642  22    22221 


Q ss_pred             CCCcEEEEEEeCC
Q 023645          192 EASSYDFAFVDAE  204 (279)
Q Consensus       192 ~~~~fDlI~id~~  204 (279)
                       .+++|+++..+.
T Consensus        80 -~~~id~li~~Ag   91 (247)
T 3lyl_A           80 -NLAIDILVNNAG   91 (247)
T ss_dssp             -TCCCSEEEECCC
T ss_pred             -cCCCCEEEECCC
Confidence             357899987754

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=81.39  E-value=4.6  Score=34.80  Aligned_cols=80  Identities=9%  Similarity=0.074  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCC---CcEEEEEcChhhH--HHHHHhCCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAADS--LKALILNGE  192 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~---~~v~~~~gd~~~~--l~~~~~~~~  192 (279)
                      ..++||-.| |+|+.+..+++.+ ..+.+|++++.++.........+......   .+++++.+|..+.  +...     
T Consensus        24 ~~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-----   97 (351)
T 3ruf_A           24 SPKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQV-----   97 (351)
T ss_dssp             SCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHH-----
T ss_pred             CCCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-----
Confidence            467899888 6788888887765 23579999998654322222222221100   3589999998653  3333     


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      -..+|.||..+.
T Consensus        98 ~~~~d~Vih~A~  109 (351)
T 3ruf_A           98 MKGVDHVLHQAA  109 (351)
T ss_dssp             TTTCSEEEECCC
T ss_pred             hcCCCEEEECCc
Confidence            247899987664

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=81.19  E-value=6.8  Score=33.66  Aligned_cols=84  Identities=13%  Similarity=0.157  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCc-cCHHH-HHHHHHCCCCCEEEEEeCCh------------------hHHHHHHHHHHHhCCCCcEEEEEc
Q 023645          119 GAQRCIEVGVY-TGYSS-LAIALVLPESGCLVACERDA------------------RSLEVAKKYYERAGVSHKVKIKHG  178 (279)
Q Consensus       119 ~~~~VLEiG~G-~G~~t-~~la~~~~~~~~v~~iD~s~------------------~~~~~a~~~~~~~g~~~~v~~~~g  178 (279)
                      ...+||=|||| .|... ..|+.. + -++++.+|.+.                  ...+.+++.+...+..-+++.+..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~a-G-VG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~  112 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRC-G-IGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY  112 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHc-C-CCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence            45699999997 34433 334443 2 37999999876                  566778888887665545666655


Q ss_pred             Chh--hHHHHHHh----CC--CCCcEEEEEEeCC
Q 023645          179 LAA--DSLKALIL----NG--EASSYDFAFVDAE  204 (279)
Q Consensus       179 d~~--~~l~~~~~----~~--~~~~fDlI~id~~  204 (279)
                      +..  +.+..+..    ..  ....||+|+...+
T Consensus       113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D  146 (292)
T 3h8v_A          113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD  146 (292)
T ss_dssp             CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS
T ss_pred             cCCcHHHHHHHhhhhcccccccCCCCCEEEECCc
Confidence            443  22222210    00  0147999985443

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=81.14  E-value=6.3  Score=33.05  Aligned_cols=85  Identities=11%  Similarity=-0.005  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhH--HHHHHhCC--C
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS--LKALILNG--E  192 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~--l~~~~~~~--~  192 (279)
                      .+++||-.|. +|.++..+++.+. .+.+|+.++.+++..+.+.+.++..+.. .++.++.+|..+.  +..+.++-  .
T Consensus        10 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           10 QDRTYLVTGG-GSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4678888885 4566666666542 3679999999998887777777654432 2688999998642  12111100  0


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      .+++|+++.++.
T Consensus        89 ~g~id~lv~nAg  100 (281)
T 3svt_A           89 HGRLHGVVHCAG  100 (281)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257899987654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=80.95  E-value=9.7  Score=32.13  Aligned_cols=94  Identities=16%  Similarity=0.186  Sum_probs=56.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHh---------CCC--------CcEEEEEcChhh
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA---------GVS--------HKVKIKHGLAAD  182 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~---------g~~--------~~v~~~~gd~~~  182 (279)
                      ++|.=||+|  ..+..++..+. .+.+|+.+|.+++.++.+++.+...         ++.        .++++. .+.. 
T Consensus         5 ~kV~VIGaG--~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~-   80 (283)
T 4e12_A            5 TNVTVLGTG--VLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS-DDLA-   80 (283)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE-SCHH-
T ss_pred             CEEEEECCC--HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe-CCHH-
Confidence            578888875  44444444321 1569999999999888777654221         111        112221 2221 


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCcc--chHHHHHHHHccCCCCcEEE
Q 023645          183 SLKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~--~~~~~l~~~~~~Lk~gG~lv  226 (279)
                         ..     -...|+|+......  .....++.+.+.++++.+++
T Consensus        81 ---~~-----~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~  118 (283)
T 4e12_A           81 ---QA-----VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFA  118 (283)
T ss_dssp             ---HH-----TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             ---HH-----hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEE
Confidence               11     25679998876543  45567788888888877654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=80.84  E-value=2  Score=36.50  Aligned_cols=87  Identities=13%  Similarity=0.072  Sum_probs=54.7

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-CC---EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE-SG---CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~-~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ++|.=||||  ..+..++..+.. +.   +|+.+|.+++..+.+.+.   .|    +.+ ..+..+.   +      ...
T Consensus         4 ~~I~iIG~G--~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~---~g----i~~-~~~~~~~---~------~~a   64 (280)
T 3tri_A            4 SNITFIGGG--NMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK---CG----VHT-TQDNRQG---A------LNA   64 (280)
T ss_dssp             SCEEEESCS--HHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT---TC----CEE-ESCHHHH---H------SSC
T ss_pred             CEEEEEccc--HHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH---cC----CEE-eCChHHH---H------hcC
Confidence            468888884  455554443321 22   799999999876655442   23    332 2233222   1      457


Q ss_pred             EEEEEeCCccchHHHHHHHHcc-CCCCcEEE
Q 023645          197 DFAFVDAEKRMYQEYFELLLQL-IRVGGIIV  226 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~-Lk~gG~lv  226 (279)
                      |+||+........+.++.+.+. ++++.+++
T Consensus        65 DvVilav~p~~~~~vl~~l~~~~l~~~~iii   95 (280)
T 3tri_A           65 DVVVLAVKPHQIKMVCEELKDILSETKILVI   95 (280)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHHHTTTCEEE
T ss_pred             CeEEEEeCHHHHHHHHHHHHhhccCCCeEEE
Confidence            9999988777778888888887 77765554

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=80.82  E-value=7.4  Score=32.27  Aligned_cols=85  Identities=18%  Similarity=0.098  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--CC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~~  193 (279)
                      .++++|-.|+ +|..+..+++.+. .+.+|+.++.+++..+.+.+.+.......++.++.+|..+.  +..+.++-  ..
T Consensus        12 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           12 TDRVVLITGG-GSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4578888885 5666777666542 35799999999887766665555442224588889998642  22221100  02


Q ss_pred             CcEEEEEEeCC
Q 023645          194 SSYDFAFVDAE  204 (279)
Q Consensus       194 ~~fDlI~id~~  204 (279)
                      +.+|+++.++.
T Consensus        91 g~id~lv~nAg  101 (267)
T 1iy8_A           91 GRIDGFFNNAG  101 (267)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899987754

>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}

Probab=80.75  E-value=7.8  Score=29.27  Aligned_cols=96  Identities=13%  Similarity=-0.021  Sum_probs=49.8

Q ss_pred             CccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc-
Q 023645          128 VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-  206 (279)
Q Consensus       128 ~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~-  206 (279)
                      .|+++++....+......+|..+|-++...+..+..++..+.. .+.....+..+.+..+.    ...+|+|++|.... 
T Consensus         9 ~~~~~~~~~~~~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~----~~~~dlvilD~~l~~   83 (164)
T 3t8y_A            9 HHSSGLVPRGSHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDM-KVVGFAKDGLEAVEKAI----ELKPDVITMDIEMPN   83 (164)
T ss_dssp             ---------------CCEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHH----HHCCSEEEECSSCSS
T ss_pred             cccCCcccCccccccCccEEEEEcCCHHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHhc----cCCCCEEEEeCCCCC
Confidence            4555555555554433468999999999998888888865421 12223556666555443    35699999996532 


Q ss_pred             -chHHHHHHHHccCCCCcEEEEeC
Q 023645          207 -MYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       207 -~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                       +-.++++.+... .+--++++..
T Consensus        84 ~~g~~l~~~lr~~-~~~~ii~~s~  106 (164)
T 3t8y_A           84 LNGIEALKLIMKK-APTRVIMVSS  106 (164)
T ss_dssp             SCHHHHHHHHHHH-SCCEEEEEES
T ss_pred             CCHHHHHHHHHhc-CCceEEEEec
Confidence             234555555443 2344555543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=80.31  E-value=15  Score=27.19  Aligned_cols=87  Identities=11%  Similarity=0.113  Sum_probs=50.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEE-EcChhhHHHHHHhCCCCCc
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIK-HGLAADSLKALILNGEASS  195 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~-~gd~~~~l~~~~~~~~~~~  195 (279)
                      ..+++|+=||+  |..+..++..+.. +.+|+.+|.+++..+...+   ..+    +.+. ..+..+.+         ..
T Consensus        19 ~~~~~v~iiG~--G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~---~~~----~~~~~~~~~~~~~---------~~   80 (144)
T 3oj0_A           19 NGGNKILLVGN--GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAE---KYE----YEYVLINDIDSLI---------KN   80 (144)
T ss_dssp             HCCCEEEEECC--SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHH---HHT----CEEEECSCHHHHH---------HT
T ss_pred             ccCCEEEEECC--CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH---HhC----CceEeecCHHHHh---------cC
Confidence            34789999997  7788887777642 4579999999876544333   223    2222 22222222         35


Q ss_pred             EEEEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      .|+|+...+....  .+.  ...+++|++++
T Consensus        81 ~Divi~at~~~~~--~~~--~~~l~~g~~vi  107 (144)
T 3oj0_A           81 NDVIITATSSKTP--IVE--ERSLMPGKLFI  107 (144)
T ss_dssp             CSEEEECSCCSSC--SBC--GGGCCTTCEEE
T ss_pred             CCEEEEeCCCCCc--Eee--HHHcCCCCEEE
Confidence            7998876543321  111  25678866554

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=80.15  E-value=7.5  Score=31.83  Aligned_cols=83  Identities=22%  Similarity=0.154  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--CC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~~  193 (279)
                      .+++||-.|+ +|..+..+++.+. .+.+|+.++.+++..+...+.++..+  .++.++.+|..+.  +..+.++-  ..
T Consensus         8 ~~k~vlITGa-s~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            8 ENKVGIVTGS-GGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4678898885 4666766666542 35799999999988877777666544  4688999998652  22211100  02


Q ss_pred             CcEEEEEEeCC
Q 023645          194 SSYDFAFVDAE  204 (279)
Q Consensus       194 ~~fDlI~id~~  204 (279)
                      +.+|.++.++.
T Consensus        85 g~id~li~~Ag   95 (253)
T 3qiv_A           85 GGIDYLVNNAA   95 (253)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47999998764

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=80.13  E-value=6.4  Score=33.06  Aligned_cols=81  Identities=22%  Similarity=0.232  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HH----HHHhCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK----ALILNG  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~----~~~~~~  191 (279)
                      .++++|-.|++ |.++..+++.+. .+.+|+.++.+++..+.+.+.+...+  .++.++.+|..+.  +.    ...+. 
T Consensus        23 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~-   98 (279)
T 3sju_A           23 RPQTAFVTGVS-SGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVER-   98 (279)
T ss_dssp             --CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH-
Confidence            46788988855 556666666542 36799999999988777777666544  4589999998642  11    11111 


Q ss_pred             CCCcEEEEEEeCC
Q 023645          192 EASSYDFAFVDAE  204 (279)
Q Consensus       192 ~~~~fDlI~id~~  204 (279)
                       -+++|+++.++.
T Consensus        99 -~g~id~lv~nAg  110 (279)
T 3sju_A           99 -FGPIGILVNSAG  110 (279)
T ss_dssp             -HCSCCEEEECCC
T ss_pred             -cCCCcEEEECCC
Confidence             257899987654

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=80.09  E-value=21  Score=29.54  Aligned_cols=83  Identities=13%  Similarity=0.055  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCC--C
Q 023645          119 GAQRCIEVGVY-TGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (279)
Q Consensus       119 ~~~~VLEiG~G-~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~--~  192 (279)
                      .+++||-.|++ +|.++..+++.+. .+.+|+.++.+++..+.+++..+..+   .+.++.+|..+.  +..+.+.-  .
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN---SPYVYELDVSKEEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45789999975 2667777776653 35799999998763233333323223   267788887542  22211100  0


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      .+.+|+++.++.
T Consensus        82 ~g~id~lv~nAg   93 (275)
T 2pd4_A           82 LGSLDFIVHSVA   93 (275)
T ss_dssp             TSCEEEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            257999988754

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=80.08  E-value=15  Score=30.78  Aligned_cols=81  Identities=20%  Similarity=0.149  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChh-------HHHHHHHHHHHhCCCCcEEEEEcChhhH--HHH--
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDAR-------SLEVAKKYYERAGVSHKVKIKHGLAADS--LKA--  186 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~-------~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~--  186 (279)
                      .++++|-.|++ |.++..+++.+ ..+.+|+.++.+++       .++.+.+.++..+  .++.++.+|..+.  +..  
T Consensus         8 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~   84 (285)
T 3sc4_A            8 RGKTMFISGGS-RGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDAVAAAV   84 (285)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHH
Confidence            46788888865 55666666654 33579999999876       3444444455444  3588999998652  122  


Q ss_pred             --HHhCCCCCcEEEEEEeCC
Q 023645          187 --LILNGEASSYDFAFVDAE  204 (279)
Q Consensus       187 --~~~~~~~~~fDlI~id~~  204 (279)
                        ..+.  .++.|+++.++.
T Consensus        85 ~~~~~~--~g~id~lvnnAg  102 (285)
T 3sc4_A           85 AKTVEQ--FGGIDICVNNAS  102 (285)
T ss_dssp             HHHHHH--HSCCSEEEECCC
T ss_pred             HHHHHH--cCCCCEEEECCC
Confidence              1111  257999987654

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=80.06  E-value=3.4  Score=36.02  Aligned_cols=94  Identities=12%  Similarity=0.061  Sum_probs=54.9

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-C-------CEEEEEeCChh-----HHHHHHHHHHHh----C--CCCcEEEEEcChh
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE-S-------GCLVACERDAR-----SLEVAKKYYERA----G--VSHKVKIKHGLAA  181 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~-~-------~~v~~iD~s~~-----~~~~a~~~~~~~----g--~~~~v~~~~gd~~  181 (279)
                      ++|.-||+|  ..+..++..+.. +       .+|+.+|.+++     ..+..++.-...    +  +..++.+. .+..
T Consensus         9 mkI~iIG~G--~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~   85 (354)
T 1x0v_A            9 KKVCIVGSG--NWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAV-PDVV   85 (354)
T ss_dssp             EEEEEECCS--HHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEE-SSHH
T ss_pred             CeEEEECCC--HHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEE-cCHH
Confidence            478999885  444444433321 2       47999999987     555443311000    1  11123322 2222


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      +.   .      ...|+||+........+.++.+.+.++++.+++
T Consensus        86 ~~---~------~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv  121 (354)
T 1x0v_A           86 QA---A------EDADILIFVVPHQFIGKICDQLKGHLKANATGI  121 (354)
T ss_dssp             HH---H------TTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEE
T ss_pred             HH---H------cCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            21   1      468999998777777888888888898887554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	1e-59
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	2e-59
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	1e-44
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	3e-12
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	3e-09
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	4e-09
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	9e-08
d2as0a2	324	c.66.1.51 (A:73-396) Hypothetical protein PH1915,	0.001
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	0.002

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  186 bits (474), Expect = 1e-59
 Identities = 83/217 (38%), Positives = 128/217 (58%), Gaps = 5/217 (2%)

Query: 67  SVTPP----LYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQ 121
            + PP    L+ Y+L   +RE   LR LR  T         ++ +QAQLLA L +++ A+
Sbjct: 2   CLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAK 61

Query: 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181
           + +++G +TGYS+LA+AL LP  G +V CE DA+  E+ +  + +A   HK+ ++   A 
Sbjct: 62  KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL 121

Query: 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV 241
           ++L  L+  GEA ++D A VDA+K     Y+E  LQL+R GGI+ +  VLW GKV     
Sbjct: 122 ETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPK 181

Query: 242 NDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 278
            D     +RN N+ +  D RV IS++P+GDG+T+  K
Sbjct: 182 GDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 218

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  186 bits (473), Expect = 2e-59
 Identities = 84/223 (37%), Positives = 127/223 (56%), Gaps = 10/223 (4%)

Query: 66  ISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQR 122
           +  +  LY YIL      RE E +++LRE TA    + M  S D+ Q L+ML++++ A+ 
Sbjct: 3   LLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKN 62

Query: 123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182
            +E+GVYTGYS LA AL +PE G ++A + +  + E+     ++AGV HK+  + G A  
Sbjct: 63  TMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP 122

Query: 183 SLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV 241
            L  +I +     SYDF FVDA+K  Y  Y + L+ L++VGG+I  DN LW+G V     
Sbjct: 123 VLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPD 182

Query: 242 NDAKTIS------IRNFNKNLMEDERVSISMVPIGDGMTICQK 278
              +         +   NK L  D R+ I M+P+GDG+TIC++
Sbjct: 183 APLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRR 225

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  148 bits (374), Expect = 1e-44
 Identities = 41/212 (19%), Positives = 87/212 (41%), Gaps = 11/212 (5%)

Query: 72  LYDYILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
           +  Y+ +N +  +P+ + +  +     +   M V   + Q++  +++       +E+G Y
Sbjct: 7   ILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAY 66

Query: 130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
            GYS++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L  
Sbjct: 67  CGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK 126

Query: 190 NGEASSYDFAFVDAEKRMYQEYFELL--LQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI 247
             +  + D  F+D  K  Y     LL    L+R G +++ DNV+  G             
Sbjct: 127 KYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAY------ 180

Query: 248 SIRNFNKNLMEDERVSISMVPIGDGMTICQKR 279
            +R  +          +  + + DG+     +
Sbjct: 181 -VRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ 211

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 62.8 bits (152), Expect = 3e-12
 Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 16/211 (7%)

Query: 68  VTPPLYDYILRNVREPEILRQLREETAGM---RGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           +T    D+ L   R  E  R L          RG +M   PD   +   ++  L  +  +
Sbjct: 28  LTDRPRDWPL--DRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIV 85

Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
           E+GVY G S      +    G         R L   +             I       S 
Sbjct: 86  ELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----DMENITLHQGDCSD 140

Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLL-QLIRVGGIIVI-DNVLWHGKVADQMVN 242
                +    ++   F+D          +  +  L+  G   +I D + +  + A Q+ +
Sbjct: 141 LTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFS 200

Query: 243 DAKTISIRNFNKNLMEDERVSISMVPIGDGM 273
           +     +  F   L  D   + +   +  G+
Sbjct: 201 E----YLGAFRDVLSMDMLYANASSQLDRGV 227

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.3 bits (130), Expect = 3e-09
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           R +Q+    D + ++     +      +EVGV +G  S  I   L   G L   ERD  +
Sbjct: 64  RNTQIISEIDASYIIMRC-GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDN 122

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL 216
           L+ A            V+      AD +             +  V A+      + + + 
Sbjct: 123 LKKAMDNLSEFYDIGNVRTSRSDIADFIS---------DQMYDAVIADIPDPWNHVQKIA 173

Query: 217 QLIRVGGIIVI 227
            +++ G +   
Sbjct: 174 SMMKPGSVATF 184

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 4e-09
 Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           RG+ +   P    ++  ++ I      +E G  +G  SL ++  +   G +++ E     
Sbjct: 77  RGTAI-TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDH 135

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAAD------SLKALILNGEASSYDFAFVDAEKRMYQE 210
            ++AKK Y+    S K+        +       +     + ++ ++D   +D        
Sbjct: 136 HDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNP--HV 193

Query: 211 YFELLLQLIRVGGIIVI 227
              +    ++ GG+  +
Sbjct: 194 TLPVFYPHLKHGGVCAV 210

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.6 bits (118), Expect = 9e-08
 Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 23/167 (13%)

Query: 61  SNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +    + + P L DY++   R P++                 + P  A  +     I   
Sbjct: 55  NGALFLVLRPLLVDYVMSMPRGPQV-----------------IYPKDAAQIVHEGDIFPG 97

Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
            R +E G  +G  +L++   +  +G +++ E+ A   E A++             +  ++
Sbjct: 98  ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157

Query: 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
             +   L       S D A +D       E  + + +L+  GG++++
Sbjct: 158 DLADSELP----DGSVDRAVLDMLA--PWEVLDAVSRLLVAGGVLMV 198

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 17/144 (11%)

Query: 96  MRGSQMQVSPDQA-QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA 154
           MRG +     DQ    LA+   +    R ++V  YTG    AI   +  +  ++  ++  
Sbjct: 121 MRGQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGG--FAIHAAIAGADEVIGIDKSP 178

Query: 155 RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA----------- 203
           R++E AK+  +  GV  ++K   G A + ++ L   GE   +D   +D            
Sbjct: 179 RAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGE--KFDIVVLDPPAFVQHEKDLK 236

Query: 204 -EKRMYQEYFELLLQLIRVGGIIV 226
              R Y       L L++ GGI+V
Sbjct: 237 AGLRAYFNVNFAGLNLVKDGGILV 260

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 12/115 (10%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172
           +  Q+    + ++VG  +G  +   A ++  +G ++  +     ++ +     +   +  
Sbjct: 70  LFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL 129

Query: 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
              +  L     +                 A   + Q   + L    + GG +++
Sbjct: 130 SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPV-VPQALIDQL----KPGGRLIL 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	100.0
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	100.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.98
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.79
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.78
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.76
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.76
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.75
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.75
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.73
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.73
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.73
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.73
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.72
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.71
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.69
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.68
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.66
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.65
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.65
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.64
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.64
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.64
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.63
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.62
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.62
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.61
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.6
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.6
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.59
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.58
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.58
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.57
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.57
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.57
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.56
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.55
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.55
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.55
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.53
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.53
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.52
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.51
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.51
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.51
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.51
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.51
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.5
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.49
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.49
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.48
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.46
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.43
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.42
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.42
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.41
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.4
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.37
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.37
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.37
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.35
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	99.33
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.33
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.33
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.28
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.27
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.27
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.27
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.26
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.26
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.21
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.2
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.19
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.18
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.18
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.17
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.16
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.12
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.07
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.06
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.04
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.0
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.87
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.83
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.82
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.8
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.8
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.79
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.75
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.67
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.65
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.65
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.64
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.54
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.53
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.44
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.36
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.35
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.18
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.07
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.77
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.7
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.62
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.55
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.43
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.42
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.39
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.38
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.35
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.32
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.23
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.09
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.02
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.87
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.71
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.59
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.57
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.43
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.38
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.38
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.2
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.2
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.18
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.0
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.98
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.79
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.51
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.44
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.24
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.13
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.06
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.01
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.96
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.91
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.74
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.69
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	94.45
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.41
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	94.38
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.36
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.35
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.2
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	93.88
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	93.77
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	93.73
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.53
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	93.1
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.99
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.54
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.4
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.16
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.94
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.81
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.32
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	88.69
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	88.54
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	88.41
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.38
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.36
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	88.05
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	87.96
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.65
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	87.37
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	87.29
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	86.98
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	86.89
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	86.7
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.61
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	86.22
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	86.19
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	86.03
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	85.45
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	85.32
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	85.12
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	84.87
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.7
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	84.6
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	84.55
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	83.7
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	83.31
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	83.11
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	82.98
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	82.35
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	81.76
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	81.31
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	81.08
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	80.95
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	80.81
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	80.7
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	80.65
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	80.6
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	80.21

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-43  Score=294.23  Aligned_cols=211  Identities=38%  Similarity=0.657  Sum_probs=200.8

Q ss_pred             CChhHHHHHHhc-cCChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCE
Q 023645           68 VTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC  146 (279)
Q Consensus        68 ~~~~l~~Y~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~  146 (279)
                      .++++++|+.++ .++++.++++++.+.....+.|.+++++++++..+++..++++|||||||+|++|++++++++++++
T Consensus         7 ~~~~l~~Y~~~~~~~~~~~l~~l~~~t~~~~~~~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~   86 (219)
T d2avda1           7 EDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGR   86 (219)
T ss_dssp             TTSHHHHHHHHTTCCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCE
T ss_pred             CcHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCce
Confidence            467899999998 4678999999999988877788999999999999999999999999999999999999999988899


Q ss_pred             EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645          147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      |+++|.+++..+.|+++++.+|+.++++++.||+.+.++.+...+..++||+||+|++++.|..+++.+.++|+|||+|+
T Consensus        87 i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii  166 (219)
T d2avda1          87 VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILA  166 (219)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEE
Confidence            99999999999999999999999999999999999999888766656899999999999999999999999999999999


Q ss_pred             EeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 023645          227 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK  278 (279)
Q Consensus       227 ~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~  278 (279)
                      +||++|+|.+.++...+..+.++++|++.+.++++++++++|+|||++||+|
T Consensus       167 ~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPigdGl~ia~K  218 (219)
T d2avda1         167 VLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK  218 (219)
T ss_dssp             EECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEE
T ss_pred             EeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeecCCeeEEEEe
Confidence            9999999999999988999999999999999999999999999999999998

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=3.5e-42  Score=291.27  Aligned_cols=214  Identities=39%  Similarity=0.680  Sum_probs=196.2

Q ss_pred             cCCCChhHHHHHHhc---cCChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC
Q 023645           65 VISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL  141 (279)
Q Consensus        65 ~~~~~~~l~~Y~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~  141 (279)
                      .+..++.+++|+.++   .++++.++++++.+...+.+.|.+++.+++++..++...++++||||||++|++++++++++
T Consensus         2 ~~~~~~~l~~Yi~~~s~~~~~~~~l~~l~~~~~~~~~~~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al   81 (227)
T d1susa1           2 SLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAI   81 (227)
T ss_dssp             CSBSCHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHS
T ss_pred             CccccHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhC
Confidence            355788999999875   35789999999999888888999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCC-CCCcEEEEEEeCCccchHHHHHHHHccCC
Q 023645          142 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLIR  220 (279)
Q Consensus       142 ~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~-~~~~fDlI~id~~~~~~~~~l~~~~~~Lk  220 (279)
                      +++++++++|.+++..+.|+++++++|+.++++++.|++.+.++.+...+ ..++||+||+|+++..|..+++.+.++|+
T Consensus        82 ~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~  161 (227)
T d1susa1          82 PEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVK  161 (227)
T ss_dssp             CTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBC
T ss_pred             CCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcC
Confidence            98899999999999999999999999999999999999999999886543 25689999999999999999999999999


Q ss_pred             CCcEEEEeCCCCCCcccCcccCChh------hHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 023645          221 VGGIIVIDNVLWHGKVADQMVNDAK------TISIRNFNKNLMEDERVSISMVPIGDGMTICQK  278 (279)
Q Consensus       221 ~gG~lv~dd~~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i~~~  278 (279)
                      |||+|++||++|+|.+.+|...+..      ..++++|++.+.+||+++++++|+|||++||||
T Consensus       162 ~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~llPigDGl~i~~K  225 (227)
T d1susa1         162 VGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRR  225 (227)
T ss_dssp             TTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCEEECSTTCEEEECB
T ss_pred             CCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEEEeecCCeeEEEEE
Confidence            9999999999999999887654332      236999999999999999999999999999998

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=2.2e-31  Score=223.32  Aligned_cols=196  Identities=20%  Similarity=0.331  Sum_probs=170.0

Q ss_pred             ChhHHHHHHhccCC---hHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCC
Q 023645           69 TPPLYDYILRNVRE---PEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESG  145 (279)
Q Consensus        69 ~~~l~~Y~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~  145 (279)
                      ++++.+|+.++..+   .++++.+.+.+... ...|.++++++++|..++...+|++|||||||+|++|+++++++++++
T Consensus         4 ~~~~~~yv~~~~~~~~p~~vl~~~~~~~~~~-~~~m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g   82 (214)
T d2cl5a1           4 EQRILRYVQQNAKPGDPQSVLEAIDTYCTQK-EWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGA   82 (214)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT-CCCCSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc-CCccccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCcc
Confidence            35788999998532   35778877766543 456889999999999999999999999999999999999999998789


Q ss_pred             EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHH--HHHHHccCCCCc
Q 023645          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEY--FELLLQLIRVGG  223 (279)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~--l~~~~~~Lk~gG  223 (279)
                      +|+++|.++++.+.|+++++.+|+.++|+++.||+.+.++.+......++||+||+|+++..+...  +....++|+|||
T Consensus        83 ~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGG  162 (214)
T d2cl5a1          83 RLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGT  162 (214)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCc
Confidence            999999999999999999999999999999999999988777655445789999999998887664  556678999999


Q ss_pred             EEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEE-------eecCCceEEEEEC
Q 023645          224 IIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM-------VPIGDGMTICQKR  279 (279)
Q Consensus       224 ~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------lp~~~G~~i~~~~  279 (279)
                      +|++||++|+|.              .++.+++++.+++.+..       +|++||+.++..+
T Consensus       163 vIv~Ddvl~~g~--------------~~~~~~vr~~~~~~~~~~~~~~~~~~~~dgl~~s~~~  211 (214)
T d2cl5a1         163 VLLADNVIVPGT--------------PDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  211 (214)
T ss_dssp             EEEESCCCCCCC--------------HHHHHHHHHCTTEEEEEEEEECTTSSSEEEEEEEEEC
T ss_pred             EEEEeCcCCCCC--------------hHHHHHHhccCceeehhhhhcceecccCCceEEEEec
Confidence            999999999986              56888889999998775       7889999998764

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=6.3e-19  Score=149.48  Aligned_cols=126  Identities=21%  Similarity=0.201  Sum_probs=108.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      ...+.....+...+...++++|||||||+|..+..+++..+  ++|+|+|+|+.+++.|+++.+..|+.++++++++|+.
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~   93 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA   93 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHh
Confidence            34677777788888888999999999999999999998764  7999999999999999999999999999999999997


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 023645          182 DSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~  236 (279)
                      +..+       +++||+|++...   ..+...+++++.+.|||||.+++.+..|....
T Consensus        94 ~~~~-------~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~  144 (245)
T d1nkva_          94 GYVA-------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLP  144 (245)
T ss_dssp             TCCC-------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCC
T ss_pred             hccc-------cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCC
Confidence            6532       689999998654   34578999999999999999999988766543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.78  E-value=1.2e-18  Score=142.03  Aligned_cols=121  Identities=21%  Similarity=0.306  Sum_probs=105.4

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      .+..+...++...+...++.+|||||||+|..++.+++.   .++|+++|+++++++.|+++++.+|+.++++++++|+.
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~   92 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP   92 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh
Confidence            356666666666778888999999999999999999875   46999999999999999999999999889999999998


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +.+..      ...||+||++........+++.+.+.|||||.+++..+.
T Consensus        93 ~~~~~------~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          93 EALCK------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             HHHTT------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             hcccc------cCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeec
Confidence            76542      479999999998888889999999999999999986543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=7.8e-19  Score=152.22  Aligned_cols=158  Identities=10%  Similarity=0.088  Sum_probs=127.7

Q ss_pred             eeeeeccccccccccccCCCChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEc
Q 023645           49 NCCVSSAHDEKYSNKQVISVTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVG  127 (279)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG  127 (279)
                      ..+++.+|||.....+.+.+++.+ .|.+.... +.+.+++++.....              .+...+.+.++.+|||||
T Consensus         6 ~~~~i~~HYD~~~~fy~~~Lg~~~-~YS~g~~~~~~~tL~eAQ~~k~~--------------~~~~~l~l~~G~~VLDiG   70 (285)
T d1kpga_           6 HFANVQAHYDLSDDFFRLFLDPTQ-TYSCAYFERDDMTLQEAQIAKID--------------LALGKLGLQPGMTLLDVG   70 (285)
T ss_dssp             CHHHHHHHHTSCHHHHTTTSCTTC-CCSCCCCSSTTCCHHHHHHHHHH--------------HHHTTTTCCTTCEEEEET
T ss_pred             cHHHHHHhcCCcHHHHHHhCCCCC-cEeeEEeCCCCCCHHHHHHHHHH--------------HHHHHcCCCCCCEEEEec
Confidence            455788899988888888888875 77776653 34455555544332              234445677889999999


Q ss_pred             CccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC---
Q 023645          128 VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---  204 (279)
Q Consensus       128 ~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~---  204 (279)
                      ||+|..++++++..  +++|+||++|++.++.|++..++.|+.+++++..+|..+.         +++||.|+.-..   
T Consensus        71 CG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~---------~~~fD~i~si~~~eh  139 (285)
T d1kpga_          71 CGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF---------DEPVDRIVSIGAFEH  139 (285)
T ss_dssp             CTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---------CCCCSEEEEESCGGG
T ss_pred             CcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc---------cccccceeeehhhhh
Confidence            99999999999986  4899999999999999999999999999999999998643         578999987543   


Q ss_pred             --ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          205 --KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       205 --~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                        ...+..+++.+.++|||||.++++++..
T Consensus       140 ~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~  169 (285)
T d1kpga_         140 FGHERYDAFFSLAHRLLPADGVMLLHTITG  169 (285)
T ss_dssp             TCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             cCchhHHHHHHHHHhhcCCCCcEEEEEEec
Confidence              3456889999999999999999998863

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=4.3e-19  Score=154.27  Aligned_cols=159  Identities=9%  Similarity=0.091  Sum_probs=124.0

Q ss_pred             eeeccccccccccccCCCChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCc
Q 023645           51 CVSSAHDEKYSNKQVISVTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY  129 (279)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G  129 (279)
                      ..+.+|||.....+.+.+++.+ .|.+...+ +.+.|+++++....              .+...+.+.++.+|||||||
T Consensus         7 ~~i~~HYD~~~~fy~~~Lg~~~-~YS~~~~~~~~~tL~~Aq~~k~~--------------~~~~~l~l~~G~~VLDiGCG   71 (291)
T d1kpia_           7 EAVRSHYDKSNEFFKLWLDPSM-TYSCAYFERPDMTLEEAQYAKRK--------------LALDKLNLEPGMTLLDIGCG   71 (291)
T ss_dssp             HHHHHHHTSCHHHHHHHSCTTC-CCSCCCCSSTTCCHHHHHHHHHH--------------HHHHTTCCCTTCEEEEETCT
T ss_pred             hHHHHhcCCCHHHHHHhcCCCC-CeeeEEecCCCCCHHHHHHHHHH--------------HHHHhcCCCCCCEEEEecCc
Confidence            4566778776666666667664 66666544 44456665555432              24445567789999999999


Q ss_pred             cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCc----
Q 023645          130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----  205 (279)
Q Consensus       130 ~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~----  205 (279)
                      +|..+.++++..+  ++|+|+++|+++++.+++..+..|+.+++++...|....         +++||.|++....    
T Consensus        72 ~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~---------~~~fD~i~sie~~eH~~  140 (291)
T d1kpia_          72 WGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---------DEPVDRIVSLGAFEHFA  140 (291)
T ss_dssp             TSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---------CCCCSEEEEESCGGGTT
T ss_pred             chHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc---------ccccceEeechhHHhcc
Confidence            9999999998764  799999999999999999999999999999999987432         6899999976442    


Q ss_pred             --------cchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          206 --------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       206 --------~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                              +.+..+|+.+.++|||||.++++.+..+..
T Consensus       141 ~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~  178 (291)
T d1kpia_         141 DGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDK  178 (291)
T ss_dssp             CCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCH
T ss_pred             hhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCc
Confidence                    347899999999999999999998876544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=1.8e-18  Score=149.75  Aligned_cols=154  Identities=8%  Similarity=0.056  Sum_probs=119.9

Q ss_pred             cccccccccccCCCChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHH
Q 023645           55 AHDEKYSNKQVISVTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYS  133 (279)
Q Consensus        55 ~~~~~~~~~~~~~~~~~l~~Y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~  133 (279)
                      +|||.....+.+.+++.+ .|.+.... +.+.|++++......              +...+.+.++.+|||||||+|..
T Consensus         2 aHYD~~~~fy~~~ld~~m-~YS~~~~~~~~~tL~~AQ~~k~~~--------------~~~~l~l~~g~~VLDiGCG~G~~   66 (280)
T d2fk8a1           2 AHYDVSDDFFALFQDPTR-TYSCAYFEPPELTLEEAQYAKVDL--------------NLDKLDLKPGMTLLDIGCGWGTT   66 (280)
T ss_dssp             GGGCCCHHHHTTTSCTTC-CCSCCCCSSTTCCHHHHHHHHHHH--------------HHTTSCCCTTCEEEEESCTTSHH
T ss_pred             CCccCcHHHHHHhCCCCC-cEeeEEeCCCCCCHHHHHHHHHHH--------------HHHHcCCCCCCEEEEecCCchHH
Confidence            577777777778888875 77666543 334555555443221              22333567889999999999999


Q ss_pred             HHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-----ccch
Q 023645          134 SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMY  208 (279)
Q Consensus       134 t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~  208 (279)
                      +..+++..+  ++|+|+|+|+++++.|++.+++.++..++.+...|..+.         +++||.|++...     ..++
T Consensus        67 a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---------~~~fD~i~si~~~eh~~~~~~  135 (280)
T d2fk8a1          67 MRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---------AEPVDRIVSIEAFEHFGHENY  135 (280)
T ss_dssp             HHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---------CCCCSEEEEESCGGGTCGGGH
T ss_pred             HHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---------ccchhhhhHhhHHHHhhhhhH
Confidence            999998764  799999999999999999999999988899998887643         579999987644     3456


Q ss_pred             HHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          209 QEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       209 ~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      ..+|+.+.++|||||.++++.+....
T Consensus       136 ~~~f~~i~~~LkpgG~~~i~~i~~~~  161 (280)
T d2fk8a1         136 DDFFKRCFNIMPADGRMTVQSSVSYH  161 (280)
T ss_dssp             HHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred             HHHHHHHHhccCCCceEEEEEeeccC
Confidence            88999999999999999998765443

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.1e-18  Score=151.74  Aligned_cols=127  Identities=16%  Similarity=0.249  Sum_probs=104.1

Q ss_pred             cCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--------
Q 023645           96 MRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--------  167 (279)
Q Consensus        96 ~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--------  167 (279)
                      +++....+.|....++..++.+.++.+|||+|||+|+.|..||+.+.++++|+++|+++++++.|+++++..        
T Consensus        75 ~~r~tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~  154 (324)
T d2b25a1          75 MKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSH  154 (324)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCCCcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhh
Confidence            555566788988889999999999999999999999999999999877899999999999999999999865        


Q ss_pred             --CCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          168 --GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       168 --g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                        +..+++++.++|+.+....+.    ...||.||+|.+..  ..+++.+.+.|||||.|++-
T Consensus       155 ~~~~~~nv~~~~~di~~~~~~~~----~~~fD~V~LD~p~P--~~~l~~~~~~LKpGG~lv~~  211 (324)
T d2b25a1         155 VEEWPDNVDFIHKDISGATEDIK----SLTFDAVALDMLNP--HVTLPVFYPHLKHGGVCAVY  211 (324)
T ss_dssp             SSCCCCCEEEEESCTTCCC-----------EEEEEECSSST--TTTHHHHGGGEEEEEEEEEE
T ss_pred             hhccccceeEEecchhhcccccC----CCCcceEeecCcCH--HHHHHHHHHhccCCCEEEEE
Confidence              334679999999876533321    46899999986533  35788999999999999973

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=1.1e-17  Score=142.94  Aligned_cols=125  Identities=20%  Similarity=0.243  Sum_probs=107.8

Q ss_pred             cCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--CCCCcE
Q 023645           96 MRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GVSHKV  173 (279)
Q Consensus        96 ~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~~~~v  173 (279)
                      +++....+.|....++..++.+.++.+|||+|||+|+.|+.|++.+.++++|+++|+++++++.|+++++..  +..+++
T Consensus        73 ~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv  152 (264)
T d1i9ga_          73 MPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNW  152 (264)
T ss_dssp             SCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTE
T ss_pred             ccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceE
Confidence            556666889999999999999999999999999999999999999877899999999999999999999875  345679


Q ss_pred             EEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       174 ~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +++++|+.+..      .+++.||.||+|.+..  ..+++.+.+.|||||.+++-
T Consensus       153 ~~~~~d~~~~~------~~~~~fDaV~ldlp~P--~~~l~~~~~~LkpGG~lv~~  199 (264)
T d1i9ga_         153 RLVVSDLADSE------LPDGSVDRAVLDMLAP--WEVLDAVSRLLVAGGVLMVY  199 (264)
T ss_dssp             EEECSCGGGCC------CCTTCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccccccc------ccCCCcceEEEecCCH--HHHHHHHHhccCCCCEEEEE
Confidence            99999987531      1268999999986533  47788999999999999874

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=5.1e-17  Score=138.34  Aligned_cols=149  Identities=13%  Similarity=0.168  Sum_probs=111.8

Q ss_pred             CHHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          104 SPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       104 ~~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      .+.+...+..+... .++++|||+|||+|..++.+++.   +++|+|+|+|+.+++.|+++.+.+++.  ++++++|..+
T Consensus       104 H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~  178 (254)
T d2nxca1         104 HETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEA  178 (254)
T ss_dssp             SHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHH
T ss_pred             cchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc--eeEEeccccc
Confidence            34555556655543 46789999999999999988764   469999999999999999999999985  5788999865


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCe
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERV  262 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (279)
                      .++       .++||+|+++........+++.+.+.|||||.+++.+++...              ..++.+.+.. .++
T Consensus       179 ~~~-------~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil~~~--------------~~~v~~~~~~-~Gf  236 (254)
T d2nxca1         179 ALP-------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDR--------------APLVREAMAG-AGF  236 (254)
T ss_dssp             HGG-------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGG--------------HHHHHHHHHH-TTC
T ss_pred             ccc-------ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecchhh--------------HHHHHHHHHH-CCC
Confidence            433       479999999887777788889999999999999997664321              1233333333 345


Q ss_pred             EE-EEeecCCceEEEEEC
Q 023645          263 SI-SMVPIGDGMTICQKR  279 (279)
Q Consensus       263 ~~-~~lp~~~G~~i~~~~  279 (279)
                      .. .....++.++++-||
T Consensus       237 ~~~~~~~~~~Wv~l~~~r  254 (254)
T d2nxca1         237 RPLEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             EEEEEEEETTEEEEEEEC
T ss_pred             EEEEEEEECCEEEEEEeC
Confidence            54 344457778877665

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=1.2e-17  Score=143.27  Aligned_cols=135  Identities=22%  Similarity=0.343  Sum_probs=115.6

Q ss_pred             CChhHHHHHHhccCChHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEE
Q 023645           68 VTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCL  147 (279)
Q Consensus        68 ~~~~l~~Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v  147 (279)
                      +.|.+.+|...                 +++....+.|....++...+.+.++.+|||+|||+|+.+..+|+.++++++|
T Consensus        69 ~~p~~~d~~~~-----------------~~r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V  131 (266)
T d1o54a_          69 LIPSLIDEIMN-----------------MKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKV  131 (266)
T ss_dssp             ECCCHHHHHHT-----------------CCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEE
T ss_pred             ECCCHHHHHhh-----------------ccCCccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEE
Confidence            45666677764                 5555567889999999999999999999999999999999999998778999


Q ss_pred             EEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          148 VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       148 ~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +++|.++++++.|+++++..++.+++.+..+|..+..+       ...||.||+|.+  +...+++.+.++|||||.+++
T Consensus       132 ~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~-------~~~~D~V~~d~p--~p~~~l~~~~~~LKpGG~lv~  202 (266)
T d1o54a_         132 FAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD-------EKDVDALFLDVP--DPWNYIDKCWEALKGGGRFAT  202 (266)
T ss_dssp             EEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS-------CCSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEE
T ss_pred             EEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc-------ccceeeeEecCC--CHHHHHHHHHhhcCCCCEEEE
Confidence            99999999999999999999998889999999754322       578999999865  344789999999999999997


Q ss_pred             e
Q 023645          228 D  228 (279)
Q Consensus       228 d  228 (279)
                      .
T Consensus       203 ~  203 (266)
T d1o54a_         203 V  203 (266)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=2.6e-18  Score=145.92  Aligned_cols=139  Identities=19%  Similarity=0.153  Sum_probs=102.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (279)
Q Consensus        99 ~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (279)
                      ....+.|....++...+.+.++.+|||+|||+|..|.++++.++++++|+++|.++++++.|+++++..+..+++++.++
T Consensus        65 ~~qiiypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~  144 (250)
T d1yb2a1          65 NTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS  144 (250)
T ss_dssp             ----------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS
T ss_pred             CCcccCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            33355666666777788889999999999999999999999887689999999999999999999998777778999999


Q ss_pred             ChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhh
Q 023645          179 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLME  258 (279)
Q Consensus       179 d~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  258 (279)
                      |+.+.++       +..||.||+|.+..  ..+++.+.+.|||||++++--.              ....+.+..+.+.+
T Consensus       145 Di~~~~~-------~~~fD~V~ld~p~p--~~~l~~~~~~LKpGG~lv~~~P--------------~i~Qv~~~~~~l~~  201 (250)
T d1yb2a1         145 DIADFIS-------DQMYDAVIADIPDP--WNHVQKIASMMKPGSVATFYLP--------------NFDQSEKTVLSLSA  201 (250)
T ss_dssp             CTTTCCC-------SCCEEEEEECCSCG--GGSHHHHHHTEEEEEEEEEEES--------------SHHHHHHHHHHSGG
T ss_pred             eeecccc-------cceeeeeeecCCch--HHHHHHHHHhcCCCceEEEEeC--------------CcChHHHHHHHHHH
Confidence            9976543       57899999986533  3678999999999999998322              12345666677766


Q ss_pred             CC
Q 023645          259 DE  260 (279)
Q Consensus       259 ~~  260 (279)
                      .+
T Consensus       202 ~g  203 (250)
T d1yb2a1         202 SG  203 (250)
T ss_dssp             GT
T ss_pred             CC
Confidence            54

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=2e-17  Score=139.06  Aligned_cols=116  Identities=15%  Similarity=0.243  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645          106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (279)
Q Consensus       106 ~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (279)
                      ....++...+...++.+|||||||+|..+..+++..   ++|+|+|+|+.+++.|+++....++. ++.++++|+.+. +
T Consensus         3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~-~   77 (234)
T d1xxla_           3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P   77 (234)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccc-cccccccccccc-c
Confidence            345667788888999999999999999999999864   59999999999999999999988885 499999999763 2


Q ss_pred             HHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          186 ALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       186 ~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      .     ++++||+|++...   ..+...+++++.++|||||++++.+..
T Consensus        78 ~-----~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~  121 (234)
T d1xxla_          78 F-----PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  121 (234)
T ss_dssp             S-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             c-----cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence            1     2689999998765   346789999999999999999886543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.71  E-value=2e-17  Score=138.34  Aligned_cols=111  Identities=15%  Similarity=0.203  Sum_probs=92.3

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .++.+.++++|||||||+|.++..+++.   +++|+|+|+|+++++.|++++...+.. +++++++|+.+. + +    .
T Consensus         9 ~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l-~-~----~   78 (231)
T d1vl5a_           9 QIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-F----T   78 (231)
T ss_dssp             HHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-S----C
T ss_pred             HhcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhcccccccc-cccccccccccc-c-c----c
Confidence            3466778899999999999999999876   369999999999999999999988875 599999999764 2 1    1


Q ss_pred             CCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          193 ASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       193 ~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      +++||+|++...   ..+...++.++.++|||||++++.+..++
T Consensus        79 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  122 (231)
T d1vl5a_          79 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP  122 (231)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred             ccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            579999998765   34677899999999999999998765443

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=5.2e-17  Score=134.97  Aligned_cols=116  Identities=26%  Similarity=0.377  Sum_probs=96.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      ..|.....+...+...++.+|||||||+|+++..+++.+++.++|+++|+++++++.|+++++..+..+ +.++++|..+
T Consensus        59 ~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~~  137 (213)
T d1dl5a1          59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYY  137 (213)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGG
T ss_pred             ccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchHH
Confidence            346655555566778899999999999999999999988778999999999999999999999988865 8889999876


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .++.      .++||+|++.+..+..+   +.+.+.|||||.|++-
T Consensus       138 ~~~~------~~~fD~I~~~~~~~~~p---~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         138 GVPE------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CCGG------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEE
T ss_pred             cccc------ccchhhhhhhccHHHhH---HHHHHhcCCCcEEEEE
Confidence            5442      47899999988765543   3466789999999883

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.68  E-value=5.7e-17  Score=140.08  Aligned_cols=110  Identities=14%  Similarity=0.235  Sum_probs=94.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      +.++.+|||||||+|..+..+++..  +++|+|+|+++.+++.|+++....|+.++++++++|+.+.. .     ++++|
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~-~-----~~~sf  136 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-C-----EDNSY  136 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-S-----CTTCE
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhccccccccccccccccccccccc-c-----ccccc
Confidence            4577899999999999999999875  47999999999999999999999999999999999997642 1     15899


Q ss_pred             EEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       197 DlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      |+|++...   ..+...+++++.++|||||.+++.+.....
T Consensus       137 D~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~  177 (282)
T d2o57a1         137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKED  177 (282)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             chhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCC
Confidence            99998654   345778999999999999999998766543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.66  E-value=2.4e-16  Score=128.92  Aligned_cols=109  Identities=16%  Similarity=0.248  Sum_probs=89.9

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-cEEEEEcChhhHHHHH
Q 023645          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKAL  187 (279)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~~  187 (279)
                      +++...+...++++|||+|||+|..++.+++..   .+|+++|+|+.+++.|+++++.+++.+ ++++..+|..+.++  
T Consensus        42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~--  116 (194)
T d1dusa_          42 KILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--  116 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--
T ss_pred             HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc--
Confidence            344444556678899999999999999998864   489999999999999999999988864 69999999876443  


Q ss_pred             HhCCCCCcEEEEEEeCCcc----chHHHHHHHHccCCCCcEEEE
Q 023645          188 ILNGEASSYDFAFVDAEKR----MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~~~----~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                           +++||+|+++.+..    ....+++.+.++|+|||.+++
T Consensus       117 -----~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         117 -----DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             -----TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence                 57999999987632    245678899999999999876

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=3.7e-16  Score=132.03  Aligned_cols=101  Identities=16%  Similarity=0.237  Sum_probs=84.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++++|||||||+|..+..+++.   +.+|+|+|+|++|++.|++++...+.  +++++++|+.+...       +++||
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~-------~~~fD  107 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF-------KNEFD  107 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC-------CSCEE
T ss_pred             CCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhccc-------ccccc
Confidence            35679999999999999999985   46999999999999999999988776  48999999976521       47899


Q ss_pred             EEEEeCC------ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          198 FAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       198 lI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +|++-..      .++...+++.+.++|||||+++++-.
T Consensus       108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            9998532      23456789999999999999999643

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.7e-16  Score=131.49  Aligned_cols=116  Identities=16%  Similarity=0.288  Sum_probs=92.3

Q ss_pred             CCHHH-HHHHHHHH-hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC----CcEEEE
Q 023645          103 VSPDQ-AQLLAMLV-QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS----HKVKIK  176 (279)
Q Consensus       103 ~~~~~-~~~l~~l~-~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~----~~v~~~  176 (279)
                      ..|.. +.++..|. ...++.+|||||||+|+.+..+++...+.++|+++|+++++++.|++++++.++.    +++.++
T Consensus        58 s~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~  137 (224)
T d1i1na_          58 SAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV  137 (224)
T ss_dssp             CCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE
T ss_pred             hhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEE
Confidence            34444 44444443 4567889999999999999999998776889999999999999999999887653    468999


Q ss_pred             EcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          177 HGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       177 ~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .+|..+..+.      .++||.|++++.....+   +.+.+.|||||.||+
T Consensus       138 ~gD~~~~~~~------~~~fD~I~~~~~~~~ip---~~l~~~LkpGG~LV~  179 (224)
T d1i1na_         138 VGDGRMGYAE------EAPYDAIHVGAAAPVVP---QALIDQLKPGGRLIL  179 (224)
T ss_dssp             ESCGGGCCGG------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEE
T ss_pred             Eeecccccch------hhhhhhhhhhcchhhcC---HHHHhhcCCCcEEEE
Confidence            9998765432      47899999998765543   356788999999998

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.64  E-value=8e-16  Score=121.00  Aligned_cols=112  Identities=13%  Similarity=0.191  Sum_probs=92.8

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHh
Q 023645          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (279)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~  189 (279)
                      ++..+.....+++|||+|||+|..++.++.+..  .+|+++|.++++++.++++++..+..++++++++|+.+.++..  
T Consensus         5 ~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~--   80 (152)
T d2esra1           5 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL--   80 (152)
T ss_dssp             HHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB--
T ss_pred             HHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc--
Confidence            344444456788999999999999998877532  5999999999999999999999999999999999998877654  


Q ss_pred             CCCCCcEEEEEEeCCc--cchHHHHHHHH--ccCCCCcEEEEe
Q 023645          190 NGEASSYDFAFVDAEK--RMYQEYFELLL--QLIRVGGIIVID  228 (279)
Q Consensus       190 ~~~~~~fDlI~id~~~--~~~~~~l~~~~--~~Lk~gG~lv~d  228 (279)
                         .++||+||+|++.  ..+...++.+.  ++|+|||+++++
T Consensus        81 ---~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          81 ---TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             ---CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ---ccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence               6899999999873  34556666664  679999999986

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.64  E-value=4.8e-16  Score=131.37  Aligned_cols=109  Identities=13%  Similarity=0.181  Sum_probs=86.9

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHH
Q 023645          108 AQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (279)
Q Consensus       108 ~~~l~~l~~~--~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (279)
                      ..++..++..  .++++|||||||+|..+..+++.   +.+|+|+|+|+.|++.|+++....+.  +++++++|+.+...
T Consensus        24 ~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~   98 (246)
T d1y8ca_          24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI   98 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc--cceeeccchhhhcc
Confidence            3344444432  35679999999999999999986   45999999999999999999988776  48999999976421


Q ss_pred             HHHhCCCCCcEEEEEEeCC-------ccchHHHHHHHHccCCCCcEEEEe
Q 023645          186 ALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       186 ~~~~~~~~~~fDlI~id~~-------~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                             .++||+|++-..       ..+...+++.+.++|+|||.++++
T Consensus        99 -------~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          99 -------NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             -------SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -------cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence                   578999997432       335567899999999999999975

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.64  E-value=1.2e-15  Score=127.36  Aligned_cols=108  Identities=7%  Similarity=0.085  Sum_probs=90.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .++.+|||||||+|..+..+++... ++.+|+|+|+|++|++.|+++++..+...++.+..+|..+..        ...+
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~  109 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--------IKNA  109 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--------CCSE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--------cccc
Confidence            4567999999999999999998753 478999999999999999999998888888999999886541        4788


Q ss_pred             EEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       197 DlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      |+|++...     .++...+++++++.|||||.+++.+....
T Consensus       110 d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~  151 (225)
T d1im8a_         110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF  151 (225)
T ss_dssp             EEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             eeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccc
Confidence            99987643     34667899999999999999999876543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.63  E-value=2.5e-16  Score=136.12  Aligned_cols=109  Identities=19%  Similarity=0.301  Sum_probs=92.3

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++.+|||||||+|..+..+++..+.+++|+|+|+++.+++.|++++...+.  +++++++|+.+..  .     .++
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~--~-----~~~   94 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE--L-----NDK   94 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC--C-----SSC
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccc--c-----cCC
Confidence            346788999999999999999999888678999999999999999999987665  5899999987532  1     468


Q ss_pred             EEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       196 fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ||+|++...   ..+....++++.+.|||||.+++.+..|.
T Consensus        95 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~  135 (281)
T d2gh1a1          95 YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWI  135 (281)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHH
T ss_pred             ceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCcc
Confidence            999999875   34577899999999999999998776653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.62  E-value=1.3e-15  Score=123.51  Aligned_cols=124  Identities=12%  Similarity=0.001  Sum_probs=94.3

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC-----------C
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-----------S  170 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----------~  170 (279)
                      .+++...+++..+ ...++.+|||+|||+|..+.+|++.   +.+|+|+|+|+.+++.|++..+..+.           .
T Consensus         4 ~~~~~~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~   79 (201)
T d1pjza_           4 EVNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAA   79 (201)
T ss_dssp             SSTHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEEC
T ss_pred             hHHHHHHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccc
Confidence            3456555655554 4567889999999999999999986   68999999999999999998865432           1


Q ss_pred             CcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       171 ~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      ..+++.++|+.+..+..     ...||+|+....     ......+++.+.+.|||||.+++....+..
T Consensus        80 ~~~~~~~~d~~~l~~~~-----~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~  143 (201)
T d1pjza_          80 PGIEIWCGDFFALTARD-----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ  143 (201)
T ss_dssp             SSSEEEEECCSSSTHHH-----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred             cccceeccccccccccc-----ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence            23578889887654433     468999987654     234567899999999999988776554433

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.8e-16  Score=131.78  Aligned_cols=110  Identities=18%  Similarity=0.209  Sum_probs=88.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      .+++|||||||+|.++..+++..+  .+|++||+|+.+++.|+++.+..+  .++.++.+++.+....+    .+++||.
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~fD~  124 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL----PDGHFDG  124 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS----CTTCEEE
T ss_pred             CCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccccc----ccccccc
Confidence            567999999999999999998643  689999999999999999887654  45888888887654433    2579999


Q ss_pred             EEEeCC--------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 023645          199 AFVDAE--------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (279)
Q Consensus       199 I~id~~--------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~  236 (279)
                      |+.|..        ..+...+++.+.++|||||++++.+..+.+..
T Consensus       125 i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~  170 (229)
T d1zx0a1         125 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGEL  170 (229)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHH
T ss_pred             eeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchh
Confidence            998864        22356788999999999999999877665543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=2e-15  Score=123.47  Aligned_cols=105  Identities=14%  Similarity=0.209  Sum_probs=88.1

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ....+.+|||||||+|..+.++++.   +.+|+++|+|+.+++.+++..+..++. ++++..+|+.+...       +++
T Consensus        27 ~~~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~-------~~~   95 (198)
T d2i6ga1          27 KVVAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF-------DGE   95 (198)
T ss_dssp             TTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC-------CCC
T ss_pred             ccCCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc-------ccc
Confidence            3446679999999999999999986   469999999999999999999988886 49999999875432       578


Q ss_pred             EEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          196 YDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       196 fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ||+|++...     ......+++.+.++|+|||++++....
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          96 YDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             EEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             ccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            999998764     334567999999999999999986543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=2.2e-15  Score=124.81  Aligned_cols=103  Identities=12%  Similarity=0.124  Sum_probs=84.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .+..+|||||||+|..+..+++.   +.+|+|+|+|+++++.|+++....+.  .+.++++|+.+.. .     .+++||
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~-~-----~~~~fD  104 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLS-F-----EDKTFD  104 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCC-S-----CTTCEE
T ss_pred             CCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc--ccccccccccccc-c-----cCcCce
Confidence            35569999999999999999975   56999999999999999999887764  4688889987632 1     158999


Q ss_pred             EEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCC
Q 023645          198 FAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +|++.....     +...+++.+.++|||||.++++...
T Consensus       105 ~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            999876532     4556899999999999999987554

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.60  E-value=8.7e-15  Score=118.35  Aligned_cols=125  Identities=14%  Similarity=0.162  Sum_probs=101.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      ++..+.....++..+.....+.+|||++||+|..++.++....  .+|+++|.++++++.++++++..+..++++++++|
T Consensus        22 RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D   99 (182)
T d2fhpa1          22 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD   99 (182)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred             CcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Confidence            3344444555556555566788999999999999998887632  48999999999999999999999998889999999


Q ss_pred             hhhHHHHHHhCCCCCcEEEEEEeCCc--cchHHHHHHHH--ccCCCCcEEEEe
Q 023645          180 AADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLL--QLIRVGGIIVID  228 (279)
Q Consensus       180 ~~~~l~~~~~~~~~~~fDlI~id~~~--~~~~~~l~~~~--~~Lk~gG~lv~d  228 (279)
                      +.+.++.+...  ..+||+||+|++.  ..+...++.+.  .+|+++|+|+++
T Consensus       100 ~~~~l~~~~~~--~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         100 ANRALEQFYEE--KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHHHHHHHHT--TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             chhhhhhhccc--CCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            99888765443  4689999999983  45677788775  579999999985

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=1.1e-14  Score=128.10  Aligned_cols=110  Identities=24%  Similarity=0.346  Sum_probs=93.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++++|||+|||+|..++.++...  ..+|+++|+++.+++.+++|++.+|+.++++++++|+.+.+..+...  ..+||
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~--~~~fD  219 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK--GEKFD  219 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT--TCCEE
T ss_pred             CCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhc--cCCCC
Confidence            357899999999999999998763  35999999999999999999999999888999999999887665443  47899


Q ss_pred             EEEEeCCc------------cchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          198 FAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +|++|++.            ..|...+..+.++|+|||+|++..+.
T Consensus       220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            99999872            24667788889999999999986544

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.58  E-value=8.2e-15  Score=124.49  Aligned_cols=109  Identities=19%  Similarity=0.173  Sum_probs=91.1

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      .....+.++|||||||+|..+..+++..| +.+++++|+ +++++.+++++...++.++++++.+|+.+..        .
T Consensus        75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~--------~  144 (253)
T d1tw3a2          75 AYDWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL--------P  144 (253)
T ss_dssp             HSCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------S
T ss_pred             hcCCccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc--------c
Confidence            33455678999999999999999999987 789999998 7899999999999999999999999986532        3


Q ss_pred             CcEEEEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          194 SSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       194 ~~fDlI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      .+||+|++....+     .....++++.+.|||||.|++.+...
T Consensus       145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~  188 (253)
T d1tw3a2         145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD  188 (253)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred             cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence            6799999876532     23567999999999999988876543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.58  E-value=2.7e-15  Score=127.37  Aligned_cols=104  Identities=13%  Similarity=0.071  Sum_probs=84.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++++|||||||+|..+..+++.-  .++|+|+|+|+++++.|++.+...+...++.+.++|+.......     .++||
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~-----~~~fD   95 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL-----GKEFD   95 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC-----SSCEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc-----cccce
Confidence            456799999999999999988863  36899999999999999999988887778999999985432111     56899


Q ss_pred             EEEEeCCc-------cchHHHHHHHHccCCCCcEEEEe
Q 023645          198 FAFVDAEK-------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       198 lI~id~~~-------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +|++....       +....+++.+.++|+|||+++++
T Consensus        96 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          96 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            99987553       23457889999999999999984

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.8e-16  Score=128.22  Aligned_cols=108  Identities=20%  Similarity=0.177  Sum_probs=86.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..+..+|||||||+|..+..++...+  .+|+++|+|+++++.|++++...+.. +++++++|+.+...      +.++|
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~~------~~~~f  128 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTP------EPDSY  128 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCC------CSSCE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccccccc-cccccccccccccc------ccccc
Confidence            34567999999999999998876543  58999999999999999998877664 48999999987521      15899


Q ss_pred             EEEEEeCCccc-----hHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          197 DFAFVDAEKRM-----YQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       197 DlI~id~~~~~-----~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      |+|++......     ...+++.+.+.|+|||.+++.+....
T Consensus       129 D~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~  170 (222)
T d2ex4a1         129 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ  170 (222)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred             cccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccc
Confidence            99998765332     35689999999999999998765443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.57  E-value=7.4e-15  Score=120.84  Aligned_cols=102  Identities=17%  Similarity=0.149  Sum_probs=86.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      ...|||||||+|.++..+|+..| +..++|+|+++.++..|.+..++.++. ++.++++|+.+.+..+    .++++|.|
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~----~~~~~d~v  103 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF----EPGEVKRV  103 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC----CTTSCCEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhhhhccc----Cchhhhcc
Confidence            34799999999999999999987 789999999999999999999999996 4999999998765443    26789999


Q ss_pred             EEeCCcc---c--------hHHHHHHHHccCCCCcEEEE
Q 023645          200 FVDAEKR---M--------YQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       200 ~id~~~~---~--------~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ++..+..   .        ...+++.+.+.|||||.|.+
T Consensus       104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i  142 (204)
T d2fcaa1         104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF  142 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred             ccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence            8764311   1        25899999999999999987

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=2.1e-14  Score=125.92  Aligned_cols=110  Identities=25%  Similarity=0.360  Sum_probs=92.3

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      .....+++|||+|||+|..++.++..   ..+|+++|+|+.+++.|+++++.+|+. +++++++|+.+.+..+...  .+
T Consensus       141 ~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~--~~  214 (318)
T d1wxxa2         141 MERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKE--GE  214 (318)
T ss_dssp             GGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHT--TC
T ss_pred             HHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhh--hc
Confidence            34456789999999999999998865   469999999999999999999999996 4999999999887665443  47


Q ss_pred             cEEEEEEeCC------------ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAE------------KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~------------~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +||+|++|++            ...+...+..+.++|+|||+|++..+
T Consensus       215 ~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         215 RFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             CEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            8999999976            22355677888999999999998655

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.56  E-value=5.6e-15  Score=122.37  Aligned_cols=116  Identities=24%  Similarity=0.400  Sum_probs=96.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      +....|..-..+.++++..++.+|||||||+|+.+..+++..  +++|+++|.+++.++.|+++++..+.. +++++++|
T Consensus        59 ~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~gd  135 (215)
T d1jg1a_          59 QTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGD  135 (215)
T ss_dssp             CEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESC
T ss_pred             hhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEECc
Confidence            345667776666777788899999999999999999999865  368999999999999999999999986 49999999


Q ss_pred             hhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       180 ~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ..+..+.      .++||.|++.+.....+.   .+...|++||.+|+
T Consensus       136 ~~~g~~~------~~pfD~Iiv~~a~~~ip~---~l~~qL~~gGrLv~  174 (215)
T d1jg1a_         136 GSKGFPP------KAPYDVIIVTAGAPKIPE---PLIEQLKIGGKLII  174 (215)
T ss_dssp             GGGCCGG------GCCEEEEEECSBBSSCCH---HHHHTEEEEEEEEE
T ss_pred             cccCCcc------cCcceeEEeecccccCCH---HHHHhcCCCCEEEE
Confidence            9765443      589999999887655443   35667999999997

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.8e-14  Score=117.29  Aligned_cols=125  Identities=9%  Similarity=-0.058  Sum_probs=98.8

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC-------------
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG-------------  168 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g-------------  168 (279)
                      ..++...+++..+....++.+|||+|||+|..+.+|++.   +.+|||||+|+.+++.|++.....+             
T Consensus        28 ~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~  104 (229)
T d2bzga1          28 QGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKV  104 (229)
T ss_dssp             TCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEE
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccce
Confidence            456777777777777778889999999999999999985   5799999999999999988765321             


Q ss_pred             ---CCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          169 ---VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       169 ---~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                         ...++++.++|+.+..+..     .+.||+|+....     ......+++.+.++|||||.+++....+..
T Consensus       105 ~~~~~~~v~~~~~d~~~l~~~~-----~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~  173 (229)
T d2bzga1         105 FKSSSGNISLYCCSIFDLPRTN-----IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDP  173 (229)
T ss_dssp             EEETTSSEEEEESCGGGGGGSC-----CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCT
T ss_pred             eeecCCcEEEEEcchhhccccc-----cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCC
Confidence               1246899999998654432     578999986543     456778999999999999988776555543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2.3e-14  Score=122.76  Aligned_cols=120  Identities=17%  Similarity=0.255  Sum_probs=97.8

Q ss_pred             CCCCCHHHHHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE
Q 023645          100 QMQVSPDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (279)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~--~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~  177 (279)
                      .....|++..++.......  .+.+|||+|||+|..++.++...| +.+|+++|+|+.+++.|++|++.+++. ++++++
T Consensus        87 VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~  164 (274)
T d2b3ta1          87 TLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQ  164 (274)
T ss_dssp             SCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEEC
T ss_pred             ccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCcc-cceeee
Confidence            3345577777776655543  456899999999999999999987 789999999999999999999999995 599999


Q ss_pred             cChhhHHHHHHhCCCCCcEEEEEEeCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 023645          178 GLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       178 gd~~~~l~~~~~~~~~~~fDlI~id~~~----------------------------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +|..+.++       +.+||+|+++++.                            ..+..+++.+.++|+|||.+++.
T Consensus       165 ~d~~~~~~-------~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE  236 (274)
T d2b3ta1         165 SDWFSALA-------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  236 (274)
T ss_dssp             CSTTGGGT-------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cccccccC-------CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence            99987543       4699999998651                            11345677778999999999994

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.55  E-value=1.1e-14  Score=121.40  Aligned_cols=111  Identities=18%  Similarity=0.255  Sum_probs=89.4

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh
Q 023645          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (279)
                      ...|.....+.+.+...++.+|||||||+|+.|..+++..   ++|+++|.+++.++.|++++..  . ++++++++|..
T Consensus        53 ~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~--~-~nv~~~~~d~~  126 (224)
T d1vbfa_          53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY--Y-NNIKLILGDGT  126 (224)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT--C-SSEEEEESCGG
T ss_pred             eehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc--c-cccccccCchh
Confidence            4456665556667788899999999999999999999874   6999999999999999998764  2 46999999987


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ...+.      .++||.|++.+..+..+   +.+.+.|+|||.||+
T Consensus       127 ~g~~~------~~pfD~Iiv~~a~~~ip---~~l~~qLk~GGrLV~  163 (224)
T d1vbfa_         127 LGYEE------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMIL  163 (224)
T ss_dssp             GCCGG------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEE
T ss_pred             hcchh------hhhHHHHHhhcchhhhh---HHHHHhcCCCCEEEE
Confidence            64332      47899999987755543   346688999999998

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=3.8e-14  Score=113.38  Aligned_cols=114  Identities=19%  Similarity=0.196  Sum_probs=82.3

Q ss_pred             HHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHH
Q 023645          108 AQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (279)
Q Consensus       108 ~~~l~~l~~-~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (279)
                      ..+...+.. ...+.+|||+|||+|..++.++..   +++++++|.++++++.++++++..++.+++....+|.  .++.
T Consensus        29 e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~--~~~~  103 (171)
T d1ws6a1          29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEV--FLPE  103 (171)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHH--HHHH
T ss_pred             HHHHHHhhccccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhc--cccc
Confidence            334444443 346789999999999999987765   5689999999999999999999999987555544443  3322


Q ss_pred             HHhCCCCCcEEEEEEeCCcc-chHHHHHHH--HccCCCCcEEEEe
Q 023645          187 LILNGEASSYDFAFVDAEKR-MYQEYFELL--LQLIRVGGIIVID  228 (279)
Q Consensus       187 ~~~~~~~~~fDlI~id~~~~-~~~~~l~~~--~~~Lk~gG~lv~d  228 (279)
                      ....  ..+||+||+|++.. +..+.+..+  ..+|+|||++++.
T Consensus       104 ~~~~--~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         104 AKAQ--GERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             HHHT--TCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             cccc--CCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            2111  47899999998732 333444444  3689999999985

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.53  E-value=1e-14  Score=121.58  Aligned_cols=104  Identities=11%  Similarity=0.128  Sum_probs=83.9

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (279)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~  190 (279)
                      +..+....++++|||||||+|..+..+++.   +.+|+|+|+|+++++.|++...     ++++++++++.+...     
T Consensus        12 ~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~-----   78 (225)
T d2p7ia1          12 VRAFTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQL-----   78 (225)
T ss_dssp             HHHHGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCC-----
T ss_pred             HHHhhhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc-----ccccccccccccccc-----
Confidence            345556677889999999999999998875   3589999999999999987642     459999999875422     


Q ss_pred             CCCCcEEEEEEeCC---ccchHHHHHHHH-ccCCCCcEEEEeC
Q 023645          191 GEASSYDFAFVDAE---KRMYQEYFELLL-QLIRVGGIIVIDN  229 (279)
Q Consensus       191 ~~~~~fDlI~id~~---~~~~~~~l~~~~-~~Lk~gG~lv~dd  229 (279)
                        +++||+|++...   ..+....+.++. ++|+|||.+++.-
T Consensus        79 --~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          79 --PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             --SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             --ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEe
Confidence              578999998765   345677888887 7899999999863

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.52  E-value=1.4e-13  Score=120.47  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=93.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ..++++|||++||+|.+++.++...  ..+|+++|+++.+++.+++|++.+++. .+++++++|+.+.++.....  ..+
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~--~~~  217 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH--HLT  217 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT--TCC
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhh--cCC
Confidence            4567899999999999999887642  358999999999999999999999985 57999999999988776544  368


Q ss_pred             EEEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 023645          196 YDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       196 fDlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ||+|++|++.            .++...++.+.++|+|||+|++...
T Consensus       218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            9999999761            2467788888999999999998554

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=8.4e-15  Score=122.11  Aligned_cols=116  Identities=19%  Similarity=0.253  Sum_probs=88.8

Q ss_pred             CCHHH-HHHHHHHH-hhcCCCEEEEEcCccCHHHHHHHHHCCC-----CCEEEEEeCChhHHHHHHHHHHHhCCC----C
Q 023645          103 VSPDQ-AQLLAMLV-QILGAQRCIEVGVYTGYSSLAIALVLPE-----SGCLVACERDARSLEVAKKYYERAGVS----H  171 (279)
Q Consensus       103 ~~~~~-~~~l~~l~-~~~~~~~VLEiG~G~G~~t~~la~~~~~-----~~~v~~iD~s~~~~~~a~~~~~~~g~~----~  171 (279)
                      ..|.. +.++..+. ...++.+|||||||+|+.|..+++.+++     +.+|+++|.+++.++.|++++...++.    .
T Consensus        62 s~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~  141 (223)
T d1r18a_          62 SAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG  141 (223)
T ss_dssp             CCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCcc
Confidence            34544 44555443 5678899999999999999999887532     358999999999999999987654321    3


Q ss_pred             cEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       172 ~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ++.++++|..+..+.      .++||.|++.+.....++   .+...|+|||.+|+
T Consensus       142 nv~~~~~d~~~~~~~------~~~fD~Iiv~~a~~~~p~---~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         142 QLLIVEGDGRKGYPP------NAPYNAIHVGAAAPDTPT---ELINQLASGGRLIV  188 (223)
T ss_dssp             SEEEEESCGGGCCGG------GCSEEEEEECSCBSSCCH---HHHHTEEEEEEEEE
T ss_pred             EEEEEeccccccccc------ccceeeEEEEeechhchH---HHHHhcCCCcEEEE
Confidence            599999999765432      479999999988665443   46789999999987

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=4.6e-14  Score=120.22  Aligned_cols=104  Identities=17%  Similarity=0.139  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||+|||+|.+++.+++..  .++|+++|++|.+++.+++|++.+++.++++++++|+.+..+       .+.||
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-------~~~~D  176 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------ENIAD  176 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------CSCEE
T ss_pred             CCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-------CCCCC
Confidence            568899999999999999999873  469999999999999999999999999999999999987543       57899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      .|+++.+.. ...+++.+.++|++||+|.+++..
T Consensus       177 ~Ii~~~p~~-~~~~l~~a~~~l~~gG~lh~~~~~  209 (260)
T d2frna1         177 RILMGYVVR-THEFIPKALSIAKDGAIIHYHNTV  209 (260)
T ss_dssp             EEEECCCSS-GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEECCCCc-hHHHHHHHHhhcCCCCEEEEEecc
Confidence            999986543 346788899999999999876543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.51  E-value=9.9e-15  Score=124.15  Aligned_cols=105  Identities=16%  Similarity=0.133  Sum_probs=83.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .+..+|||+|||+|..+..++....  .+|+++|+++++++.|++.+..   ...++++++|+.+...      ++++||
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~---~~~~~~~~~d~~~~~~------~~~~fD  160 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG---MPVGKFILASMETATL------PPNTYD  160 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTT---SSEEEEEESCGGGCCC------CSSCEE
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccc---cccceeEEcccccccc------CCCccc
Confidence            4567999999999999998876543  4899999999999999987653   2358999999976422      157899


Q ss_pred             EEEEeCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          198 FAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       198 lI~id~~~~-----~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      +|++.....     +...+++++.+.|+|||+|++.+....
T Consensus       161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~  201 (254)
T d1xtpa_         161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST  201 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred             eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCC
Confidence            999876533     245789999999999999999776544

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=7.7e-14  Score=120.69  Aligned_cols=117  Identities=18%  Similarity=0.186  Sum_probs=88.3

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCC---CcEEEEEcChhhH
Q 023645          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAADS  183 (279)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~---~~v~~~~gd~~~~  183 (279)
                      ...++..++...++++|||+|||+|..+..+++.   +.+|+|+|+|++|++.|+++....+..   ....+...++...
T Consensus        44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (292)
T d1xvaa_          44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL  120 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred             HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc
Confidence            4455666666677889999999999999999986   469999999999999999998876653   1245666666543


Q ss_pred             HHHHHhCCCCCcEEEEEEeCC-----------ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          184 LKALILNGEASSYDFAFVDAE-----------KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~-----------~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .....   ..++||+|++...           ..+...+++.+.++|||||+++++-
T Consensus       121 ~~~~~---~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         121 DKDVP---AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             HHHSC---CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccC---CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            32221   1468999987432           1235678999999999999999964

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=7.1e-14  Score=112.99  Aligned_cols=117  Identities=15%  Similarity=0.175  Sum_probs=92.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      +.....++..+.....+.+|||++||+|..++.++.+..  .+|++||.++++++.++++++..+.. +++++.+|+.+.
T Consensus        28 ~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa--~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~~~~  104 (183)
T d2fpoa1          28 DRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSF  104 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHH
T ss_pred             HHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCc--ceeEEEEEeechhhHHHHHHhhcccc-ceeeeeeccccc
Confidence            334444555555556788999999999999998877532  48999999999999999999988775 489999999877


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCcc--chHHHHHHHH--ccCCCCcEEEEe
Q 023645          184 LKALILNGEASSYDFAFVDAEKR--MYQEYFELLL--QLIRVGGIIVID  228 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~--~~~~~l~~~~--~~Lk~gG~lv~d  228 (279)
                      +...     ..+||+||+|++..  .+...++.+.  .+|+++|+++++
T Consensus       105 l~~~-----~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         105 LAQK-----GTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             HSSC-----CCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cccc-----ccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            6532     57899999999833  3566677765  479999999985

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=9.8e-15  Score=122.32  Aligned_cols=96  Identities=17%  Similarity=0.176  Sum_probs=77.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++.+|||+|||+|..+..+++.   +.+|+|+|+|+.+++.|+++.    ..   .++.+|+.+. +.     ++++||+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~----~~---~~~~~~~~~l-~~-----~~~~fD~  105 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG----VK---NVVEAKAEDL-PF-----PSGAFEA  105 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT----CS---CEEECCTTSC-CS-----CTTCEEE
T ss_pred             CCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc----cc---cccccccccc-cc-----ccccccc
Confidence            5679999999999999999875   579999999999999998753    22   3567888653 21     2589999


Q ss_pred             EEEeCC----ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          199 AFVDAE----KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       199 I~id~~----~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |++...    ..+...+++++.++|||||+++++-.
T Consensus       106 ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         106 VLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             EEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence            997543    34677899999999999999999753

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.49  E-value=1.4e-13  Score=119.49  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=89.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-cEEEEEcChhhHHHHHHhCCCCCc
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ..++++|||++||+|.+++.++..   +++|++||.|+.+++.|++|++.+++.+ +++++++|+.+++......  ..+
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~--~~~  204 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR--GST  204 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH--TCC
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhc--CCC
Confidence            456789999999999999998875   5699999999999999999999999865 6999999999988765443  478


Q ss_pred             EEEEEEeCCc-------------cchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          196 YDFAFVDAEK-------------RMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       196 fDlI~id~~~-------------~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ||+|++|++.             .++...++.+..+|+|||.+++-...
T Consensus       205 fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         205 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  253 (309)
T ss_dssp             BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             CCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence            9999999761             12344556677899999876654443

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.49  E-value=4.7e-14  Score=116.44  Aligned_cols=106  Identities=18%  Similarity=0.174  Sum_probs=85.5

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      +.++.+|||+|||+|+.+..+++..+ +++|+|+|+++.+++.|++..+..+   ++.++.+|+.......   .....+
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~---~~~~~v  126 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYS---GIVEKV  126 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTT---TTCCCE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccc---cccceE
Confidence            45778999999999999999999987 6799999999999999999887643   5899999986531110   113578


Q ss_pred             EEEEEeCC-ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          197 DFAFVDAE-KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       197 DlI~id~~-~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |+||.+.. ..+...++.++.+.|||||.+++.+
T Consensus       127 d~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         127 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            88888754 4556778999999999999998854

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.48  E-value=1.2e-13  Score=113.50  Aligned_cols=102  Identities=17%  Similarity=0.205  Sum_probs=85.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      ...|||||||+|.++..+|+..| +..++|+|+++.++..|.+.+...++++ +.++.+|+.+....+    .+.++|.|
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~~~~----~~~~~~~i  105 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYF----EDGEIDRL  105 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTS----CTTCCSEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHhhhc----cCCceehh
Confidence            34799999999999999999988 7899999999999999999999999975 999999997654322    25789999


Q ss_pred             EEeCC---cc--------chHHHHHHHHccCCCCcEEEE
Q 023645          200 FVDAE---KR--------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       200 ~id~~---~~--------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ++..+   ..        ....+++.+.++|+|||.|.+
T Consensus       106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1         106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             cccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence            87643   11        136899999999999999976

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.46  E-value=9.8e-14  Score=118.00  Aligned_cols=106  Identities=19%  Similarity=0.184  Sum_probs=89.5

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...+.++|||||||+|..+..++++.| +.+++++|+ |++++.++++++..++.++++++.+|..+.+        ..+
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~--------p~~  147 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL--------PVT  147 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SCC
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc--------ccc
Confidence            345668999999999999999999998 789999998 8899999999999999999999999987532        356


Q ss_pred             EEEEEEeCCc-----cchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          196 YDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       196 fDlI~id~~~-----~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ||+|++....     +....+|+++.+.|||||.+++.+..
T Consensus       148 ~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         148 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             chhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            9999986542     33457899999999999988876654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=6.9e-14  Score=119.74  Aligned_cols=95  Identities=19%  Similarity=0.194  Sum_probs=78.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .++.+|||||||+|..+..+++..+ +.+++|+|+|+.+++.|++..      .+++++++|+.+. +.     .+++||
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l-~~-----~~~sfD  149 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-PF-----SDTSMD  149 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-SB-----CTTCEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhccc------ccccceeeehhhc-cC-----CCCCEE
Confidence            3567999999999999999999876 789999999999999988753      2589999999754 21     268899


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +|++......    ++++.++|||||++++..
T Consensus       150 ~v~~~~~~~~----~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         150 AIIRIYAPCK----AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             EEEEESCCCC----HHHHHHHEEEEEEEEEEE
T ss_pred             EEeecCCHHH----HHHHHHHhCCCcEEEEEe
Confidence            9998766554    567899999999999853

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.42  E-value=1.6e-13  Score=114.72  Aligned_cols=107  Identities=14%  Similarity=0.098  Sum_probs=82.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      +.++.+|||+|||+|+++..+++..+ ++.|+|+|+|+.+++.+++..+.   .+++.++.+|........ .  ....+
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~---~~ni~~i~~d~~~~~~~~-~--~~~~v  144 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAE---RENIIPILGDANKPQEYA-N--IVEKV  144 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTT---CTTEEEEECCTTCGGGGT-T--TCCCE
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhh---hcccceEEEeeccCcccc-c--cccee
Confidence            46778999999999999999999876 78999999999999999887653   235788888886543221 0  02345


Q ss_pred             EEEEEeCC-ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          197 DFAFVDAE-KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       197 DlI~id~~-~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      |+++.+.. ..+...++..+.+.|||||.+++..-
T Consensus       145 ~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k  179 (230)
T d1g8sa_         145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeeccccchHHHHHHHHHHHHhcccCceEEEEee
Confidence            66666544 45567789999999999999888643

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=1.9e-13  Score=114.02  Aligned_cols=106  Identities=15%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      +.++.+|||+|||+|..+..+++.++++++|+++|+++.+++.++++.+..+   .+..+.+|+..... ..  .....+
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~-~~--~~~~~v  144 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEE-YR--ALVPKV  144 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGG-GT--TTCCCE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCccc-cc--ccccce
Confidence            4578899999999999999999998778999999999999999998876433   46777777743211 10  014789


Q ss_pred             EEEEEeCCc-cchHHHHHHHHccCCCCcEEEEe
Q 023645          197 DFAFVDAEK-RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       197 DlI~id~~~-~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |+||.|... .....++..+.+.|||||.+++.
T Consensus       145 D~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         145 DVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            999998764 45667899999999999999874

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.7e-13  Score=115.45  Aligned_cols=112  Identities=13%  Similarity=0.115  Sum_probs=82.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC----C-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcE--EEEEcChhhHHHHHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL----P-ESGCLVACERDARSLEVAKKYYERAGVSHKV--KIKHGLAADSLKALILN  190 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~----~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v--~~~~gd~~~~l~~~~~~  190 (279)
                      .+..+|||||||+|..+..++..+    + ...+++++|+|+.+++.+++.++.......+  .+...++.+........
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK  118 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence            344489999999999998887653    2 1347899999999999999988754433334  45666665544433333


Q ss_pred             CCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          191 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       191 ~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+++||+|++...   ..+....++.+.++|+|||++++..
T Consensus       119 ~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         119 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             SSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEE
Confidence            34689999998765   4467789999999999999988853

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.40  E-value=1.6e-13  Score=112.52  Aligned_cols=99  Identities=22%  Similarity=0.315  Sum_probs=78.0

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      +....+..+|||||||+|..+..+.       +++|+|+|+.+++.|+++        +++++++|+.+...      .+
T Consensus        31 ~~~~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~------~~   89 (208)
T d1vlma_          31 VKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPL------KD   89 (208)
T ss_dssp             HHHHCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCS------CT
T ss_pred             HHhhCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc--------cccccccccccccc------cc
Confidence            3344556689999999998876653       468999999999998862        48999999975421      15


Q ss_pred             CcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          194 SSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       194 ~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      ++||+|++...   ..+...+++++.++|+|||.+++.+....
T Consensus        90 ~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~  132 (208)
T d1vlma_          90 ESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE  132 (208)
T ss_dssp             TCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             ccccccccccccccccccccchhhhhhcCCCCceEEEEecCCc
Confidence            79999998765   34577899999999999999999876543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.3e-12  Score=114.79  Aligned_cols=105  Identities=20%  Similarity=0.240  Sum_probs=84.0

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++++|||||||+|..++.++++.  ..+|+++|.++ ++..|++..+..++.++++++++++.+...      .+.+
T Consensus        35 ~~~~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~------~~~~  105 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL------PFPK  105 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SSSC
T ss_pred             ccCCcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC------cccc
Confidence            34578899999999999999888863  25999999986 778999999999999999999999876421      1578


Q ss_pred             EEEEEEeCC------ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          196 YDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       196 fDlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ||+|++...      .......+....++|||||.++-+-
T Consensus       106 ~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~  145 (328)
T d1g6q1_         106 VDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDK  145 (328)
T ss_dssp             EEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             eeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeee
Confidence            999998532      2345567777789999999987443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=8.9e-13  Score=115.31  Aligned_cols=104  Identities=16%  Similarity=0.161  Sum_probs=83.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ..++++|||||||+|..++.+++..+  .+|+++|.++. ...++++.+.+++.++++++++++.+...      ..++|
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga--~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~------~~~~~  101 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL------PVEKV  101 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC------SSSCE
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCC--CEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc------cccee
Confidence            45788999999999999999888632  58999999975 57788888999999999999999976421      14789


Q ss_pred             EEEEEeCC------ccchHHHHHHHHccCCCCcEEEEeC
Q 023645          197 DFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       197 DlI~id~~------~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      |+|++...      ......++..+.++|+|||.++-.-
T Consensus       102 D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~  140 (316)
T d1oria_         102 DIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  140 (316)
T ss_dssp             EEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             EEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeee
Confidence            99987643      2346778888899999999987533

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.3e-12  Score=112.24  Aligned_cols=124  Identities=13%  Similarity=0.086  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-------CC-CCcEE
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-------GV-SHKVK  174 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-------g~-~~~v~  174 (279)
                      ..+....-+...+...+..+|||||||+|..+..++...+ ..+++|||+++.+++.|+++.+..       |. ..+++
T Consensus       135 ~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~  213 (328)
T d1nw3a_         135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT  213 (328)
T ss_dssp             CCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             hHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence            3444444444455567788999999999999999998876 568999999999999998876643       23 24699


Q ss_pred             EEEcChhhHHHHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          175 IKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       175 ~~~gd~~~~l~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ++++|+.+..-.-.    -...|+||++..  ..+....+.++.+.|||||.||+...+
T Consensus       214 ~~~gd~~~~~~~~~----~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         214 LERGDFLSEEWRER----IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             EEECCTTSHHHHHH----HHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             EEECcccccccccc----cCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            99999976421100    123588888654  345667889999999999999986544

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=7e-12  Score=106.82  Aligned_cols=122  Identities=18%  Similarity=0.331  Sum_probs=94.3

Q ss_pred             CCCCCHHHHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEE
Q 023645          100 QMQVSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK  176 (279)
Q Consensus       100 ~~~~~~~~~~~l~~l~~---~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~  176 (279)
                      .....|++..++.....   ..+..+|+|+|||+|..+..+++. + +++|+++|+|+++++.|++|++.+++.+++.++
T Consensus        88 vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~  165 (271)
T d1nv8a_          88 VFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVR  165 (271)
T ss_dssp             SCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             ccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcCCCceeEEe
Confidence            34455666666665543   345679999999999999998864 5 789999999999999999999999999999999


Q ss_pred             EcChhhHHHHHHhCCCCCcEEEEEEeCCc-----------------------cchHHHHHHHHccCCCCcEEEEe
Q 023645          177 HGLAADSLKALILNGEASSYDFAFVDAEK-----------------------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       177 ~gd~~~~l~~~~~~~~~~~fDlI~id~~~-----------------------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .++..+..+..     .++||+|+++++.                       ....-+-+.+.++|+|||++++.
T Consensus       166 ~~~~~~~~~~~-----~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E  235 (271)
T d1nv8a_         166 KGEFLEPFKEK-----FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  235 (271)
T ss_dssp             ESSTTGGGGGG-----TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             ecccccccccc-----cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence            99998765533     4799999998651                       01122233346889999999985

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.33  E-value=7.6e-13  Score=110.48  Aligned_cols=119  Identities=16%  Similarity=0.283  Sum_probs=87.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC---CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (279)
                      -.|....++..++...+|++|||||++.|+++++++..+   ..+++|+++|+++.......      ...+++++++||
T Consensus        64 k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~~~~~I~~i~gD  137 (232)
T d2bm8a1          64 KDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGD  137 (232)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECC
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------ccccceeeeecc
Confidence            346777778889998999999999999999999887643   45789999999886543221      123579999999


Q ss_pred             hhh--HHHHHHhCCCCCcEEEEEEeCCccchHHHHH-HHHccCCCCcEEEEeCCC
Q 023645          180 AAD--SLKALILNGEASSYDFAFVDAEKRMYQEYFE-LLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       180 ~~~--~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~-~~~~~Lk~gG~lv~dd~~  231 (279)
                      ..+  .+..+    ....+|+||+|+.+.......+ ...++|++||++|++|+.
T Consensus       138 s~~~~~~~~l----~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         138 CSDLTTFEHL----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             SSCSGGGGGG----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred             cccHHHHHHH----HhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEcCC
Confidence            754  23222    1456899999988655433332 245899999999999985

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.7e-12  Score=111.82  Aligned_cols=104  Identities=13%  Similarity=0.122  Sum_probs=80.9

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++++|||||||+|..++.++++.+  .+|+++|.++.+. .+++.....+..++++++++++.+...      ...+
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~------~~~~  102 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHL------PVEK  102 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCC------SCSC
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcC------cccc
Confidence            445788999999999999999998643  5999999998765 567777888888899999999976421      1479


Q ss_pred             EEEEEEeCC-----cc-chHHHHHHHHccCCCCcEEEEe
Q 023645          196 YDFAFVDAE-----KR-MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       196 fDlI~id~~-----~~-~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ||+|++...     .+ ....++....++|+|||.++.+
T Consensus       103 ~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1         103 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             ceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence            999998532     22 2445566667899999999854

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.33  E-value=5.9e-12  Score=101.48  Aligned_cols=124  Identities=15%  Similarity=0.174  Sum_probs=93.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC-cEEEEEc
Q 023645          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHG  178 (279)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~g  178 (279)
                      +|..+.....++..+.....+.+|||+.||+|..++..+++-.  .+|+.||.+...++..++|++..+..+ ...++..
T Consensus        24 RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA--~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~  101 (183)
T d2ifta1          24 RPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ  101 (183)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS
T ss_pred             CcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecc--eeeEEeecccchhhhHhhHHhhhcccccccccccc
Confidence            3444555556666665556788999999999999999987643  599999999999999999999988754 5777878


Q ss_pred             ChhhHHHHHHhCCCCCcEEEEEEeCCccc--hHHHHHHHH--ccCCCCcEEEEe
Q 023645          179 LAADSLKALILNGEASSYDFAFVDAEKRM--YQEYFELLL--QLIRVGGIIVID  228 (279)
Q Consensus       179 d~~~~l~~~~~~~~~~~fDlI~id~~~~~--~~~~l~~~~--~~Lk~gG~lv~d  228 (279)
                      |+.+.+...   ....+||+||+|++...  +...++.+.  .+|+++|+++++
T Consensus       102 d~~~~l~~~---~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE  152 (183)
T d2ifta1         102 SSLDFLKQP---QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVE  152 (183)
T ss_dssp             CHHHHTTSC---CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccccccccc---ccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence            876654321   11457999999998543  566777764  579999999996

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=2.3e-11  Score=109.11  Aligned_cols=115  Identities=18%  Similarity=0.188  Sum_probs=84.9

Q ss_pred             HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC-------C-CCcEEE-EEcChhh
Q 023645          112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG-------V-SHKVKI-KHGLAAD  182 (279)
Q Consensus       112 ~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g-------~-~~~v~~-~~gd~~~  182 (279)
                      ...+.+.++.+|||||||+|..++.+|...+ .++++|||+++.+++.|+++.+..+       . ...+.+ ..++..+
T Consensus       209 l~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~  287 (406)
T d1u2za_         209 YQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD  287 (406)
T ss_dssp             HHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred             HHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhh
Confidence            3344567888999999999999999998876 4699999999999999999887542       1 112333 3455443


Q ss_pred             H--HHHHHhCCCCCcEEEEEEeCC--ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          183 S--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       183 ~--l~~~~~~~~~~~fDlI~id~~--~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                      .  ....     -..+|+|+++..  ..+....+.++.+.|||||.||..+.+.
T Consensus       288 ~~~~d~~-----~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~~  336 (406)
T d1u2za_         288 NNRVAEL-----IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR  336 (406)
T ss_dssp             CHHHHHH-----GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             ccccccc-----cccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecccC
Confidence            2  2221     256899998754  4556788999999999999999876554

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=2.1e-11  Score=98.76  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=88.0

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++..+||++||+|..+..+++.+| +++|+|+|.++++++.|+++++..+  +++.++++++.+....+... ..++
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~-~~~~   95 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTL-GIEK   95 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHT-TCSC
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHc-CCCC
Confidence            456778999999999999999999997 7999999999999999999987644  57999999987643332222 2579


Q ss_pred             EEEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEe
Q 023645          196 YDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       196 fDlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ||.|+.|.+.            ......+..+..+|+|||.+++-
T Consensus        96 vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii  140 (192)
T d1m6ya2          96 VDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVI  140 (192)
T ss_dssp             EEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEE
T ss_pred             cceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeee
Confidence            9999999653            22456778888999999999873

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.27  E-value=9.9e-12  Score=108.15  Aligned_cols=106  Identities=19%  Similarity=0.215  Sum_probs=87.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh--C--CCCcEEEEEcChhhHHHHHHhCCC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--G--VSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g--~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ...+++||.||.|.|..+..+++..+ ..+|+++|++++.++.+++.+...  +  -..+++++.+|+.+++...     
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~-----  148 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-----  148 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-----
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc-----
Confidence            45688999999999999998887544 679999999999999999988542  1  2468999999999988764     


Q ss_pred             CCcEEEEEEeCCc----c------chHHHHHHHHccCCCCcEEEEe
Q 023645          193 ASSYDFAFVDAEK----R------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       193 ~~~fDlI~id~~~----~------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      +.+||+|++|...    .      ...++++.+.+.|+|||++++.
T Consensus       149 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            6789999998631    0      1367999999999999999984

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=1.5e-11  Score=105.95  Aligned_cols=106  Identities=14%  Similarity=0.287  Sum_probs=86.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC---CCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...+++||-||.|.|..+..+++..+ ..+|+++|++|+.++.+++.+....   -+++++++.+|+.+++...     +
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----~  160 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-----K  160 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-----S
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC-----C
Confidence            35688999999999999988887544 5799999999999999999876432   2468999999999887653     5


Q ss_pred             CcEEEEEEeCCcc--------chHHHHHHHHccCCCCcEEEEe
Q 023645          194 SSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       194 ~~fDlI~id~~~~--------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++||+|++|....        ...++++.+.+.|+|||++++.
T Consensus       161 ~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         161 NEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             SCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence            7899999986411        1468999999999999999985

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.3e-12  Score=110.07  Aligned_cols=112  Identities=13%  Similarity=0.039  Sum_probs=76.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE------------------------
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK------------------------  174 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~------------------------  174 (279)
                      ++.+|||||||+|..+..++...  ..+|+|+|+|+.+++.|+++++..+......                        
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            45699999999999887776542  2479999999999999999987654321100                        


Q ss_pred             -----EEEcChhhHHHHHHhCCCCCcEEEEEEeCC-------ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          175 -----IKHGLAADSLKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       175 -----~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                           ....+....  ........++||+|++...       .+.+..+++.+.++|||||.+++.++...+
T Consensus       129 ~~~~~~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~  198 (257)
T d2a14a1         129 AAVKRVLKCDVHLG--NPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP  198 (257)
T ss_dssp             HHEEEEEECCTTSS--STTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC
T ss_pred             hhhhcccccccccc--cccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccc
Confidence                 000000000  0000113578999998644       235667899999999999999998876443

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8.8e-12  Score=105.30  Aligned_cols=85  Identities=20%  Similarity=0.223  Sum_probs=70.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      +..++||||||+|..++.++...+ +.+++|+|+++++++.|++|++.+++.+++.+++.+..+.+.........++||+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            345999999999999999999887 7899999999999999999999999999999998776543222111112568999


Q ss_pred             EEEeCC
Q 023645          199 AFVDAE  204 (279)
Q Consensus       199 I~id~~  204 (279)
                      |+++++
T Consensus       140 ivsNPP  145 (250)
T d2h00a1         140 CMCNPP  145 (250)
T ss_dssp             EEECCC
T ss_pred             EEecCc
Confidence            999876

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.21  E-value=5.6e-11  Score=97.00  Aligned_cols=91  Identities=18%  Similarity=0.154  Sum_probs=71.2

Q ss_pred             CCCHHHHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEc
Q 023645          102 QVSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (279)
Q Consensus       102 ~~~~~~~~~l~~l~~---~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (279)
                      .+++..+..+..++.   ...+++|||+|||+|..++.++...  ..+|+++|+++.+++.+++|++..+.  +.+++.+
T Consensus        26 ~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g--~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~  101 (201)
T d1wy7a1          26 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIG  101 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEES
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcC--CCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEEC
Confidence            345555544444443   2467899999999999999877642  35999999999999999999988775  4789999


Q ss_pred             ChhhHHHHHHhCCCCCcEEEEEEeCCc
Q 023645          179 LAADSLKALILNGEASSYDFAFVDAEK  205 (279)
Q Consensus       179 d~~~~l~~~~~~~~~~~fDlI~id~~~  205 (279)
                      |+.+.         .++||+||+|++.
T Consensus       102 d~~~~---------~~~fD~Vi~nPP~  119 (201)
T d1wy7a1         102 DVSEF---------NSRVDIVIMNPPF  119 (201)
T ss_dssp             CGGGC---------CCCCSEEEECCCC
T ss_pred             chhhh---------CCcCcEEEEcCcc
Confidence            98653         5789999999873

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.2e-11  Score=102.14  Aligned_cols=107  Identities=17%  Similarity=0.297  Sum_probs=86.7

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh---CCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---GVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ....+++||-||.|.|..+..+++..+ ..+++.+|++++.++.|++.+...   -.+.+++++.+|+.+++...     
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~-----  148 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-----  148 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-----
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC-----
Confidence            345688999999999999999887543 579999999999999999987542   22568999999999888653     


Q ss_pred             CCcEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 023645          193 ASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       193 ~~~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      .++||+|++|....       ...++++.+.+.|+|||++++.
T Consensus       149 ~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         149 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence            57899999996421       1346899999999999999986

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.19  E-value=5.2e-11  Score=96.68  Aligned_cols=71  Identities=18%  Similarity=0.251  Sum_probs=59.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ..+++|||+|||+|..++.++...  ..+|+++|+++.+++.|++|.+      +++++++|+.+.         +++||
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~g--a~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l---------~~~fD  109 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI---------SGKYD  109 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC---------CCCEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcC--CCcccccccCHHHHHHHHHccc------cccEEEEehhhc---------CCcce
Confidence            468899999999999998877653  2589999999999999999763      479999998653         58899


Q ss_pred             EEEEeCCc
Q 023645          198 FAFVDAEK  205 (279)
Q Consensus       198 lI~id~~~  205 (279)
                      +|++|++.
T Consensus       110 ~Vi~NPPf  117 (197)
T d1ne2a_         110 TWIMNPPF  117 (197)
T ss_dssp             EEEECCCC
T ss_pred             EEEeCccc
Confidence            99999874

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.18  E-value=7.9e-11  Score=100.50  Aligned_cols=107  Identities=16%  Similarity=0.212  Sum_probs=88.3

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-C--CCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-G--VSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g--~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...+++||-||.|.|..+..+++..+ ..+|+.+|++++.++.|++.+... +  -+.+++++.+|+..++...     +
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~-----~  146 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-----E  146 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-----C
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc-----C
Confidence            35678999999999999999887544 579999999999999999987542 2  2468999999999888653     5


Q ss_pred             CcEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .+||+|++|....       ...++++.+.+.|+|||+++...
T Consensus       147 ~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            7899999996421       25689999999999999999853

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.18  E-value=6.9e-11  Score=101.06  Aligned_cols=104  Identities=17%  Similarity=0.253  Sum_probs=85.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh---------CCCCcEEEEEcChhhHHHHH
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---------GVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---------g~~~~v~~~~gd~~~~l~~~  187 (279)
                      ..++++||.||.|.|..+..+++. + ..+|+.+|++++.++.|++.+...         ....+++++.+|+.+++.. 
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-  146 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-  146 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred             CCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-
Confidence            456889999999999999888764 4 469999999999999999876422         2356899999999988764 


Q ss_pred             HhCCCCCcEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 023645          188 ILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                           .++||+|++|....       ...++++.+.+.|+|||++++.
T Consensus       147 -----~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         147 -----NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             -----CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence                 57899999986521       1357899999999999999975

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.17  E-value=7.8e-11  Score=101.90  Aligned_cols=107  Identities=21%  Similarity=0.283  Sum_probs=85.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhC---CCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ...+++||-||.|.|..+..+++..+ ..+|+++|++++.++.+++.+....   -..+++++.+|+.+++...     .
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~-----~  177 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH-----K  177 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC-----T
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC-----C
Confidence            45688999999999999999887543 5699999999999999999875422   1368999999999988754     6


Q ss_pred             CcEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .+||+|++|....       ...++++.+.+.|+|||+++...
T Consensus       178 ~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         178 NEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             TCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            7899999986421       24578999999999999999863

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=9.6e-12  Score=105.81  Aligned_cols=113  Identities=10%  Similarity=0.004  Sum_probs=74.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc-------------------------
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-------------------------  172 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-------------------------  172 (279)
                      ..+.+|||||||+|..++..+...  ..+|+++|+++.+++.++++++..+..-.                         
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            357799999999998776544432  24899999999999999988764321100                         


Q ss_pred             ----EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-------ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 023645          173 ----VKIKHGLAADSLKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (279)
Q Consensus       173 ----v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-------~~~~~~~l~~~~~~Lk~gG~lv~dd~~~  232 (279)
                          ..+..+|.....+........++||+|++...       .+.+...++.+.++|||||++++-+++.
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~  201 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE  201 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccC
Confidence                11222333211000000112457999987543       2357788999999999999999977654

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=6.1e-10  Score=95.46  Aligned_cols=160  Identities=17%  Similarity=0.196  Sum_probs=113.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ..+......+...++...++.+|||+++|.|.=|..++.... +++|+++|.++..+...++++++.|..+ +.....+.
T Consensus        84 ~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~  161 (284)
T d1sqga2          84 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGR  161 (284)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTT
T ss_pred             EEeccccccccccccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccccc-eeeecccc
Confidence            345555666666777778889999999999999999998765 6899999999999999999999999875 44444443


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      .......     .+.||.|++|++..                         -....+..+.++|||||.||...+-..-.
T Consensus       162 ~~~~~~~-----~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~  236 (284)
T d1sqga2         162 YPSQWCG-----EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE  236 (284)
T ss_dssp             CTHHHHT-----TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred             ccchhcc-----cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh
Confidence            3221111     46899999997611                         02456777789999999999987765443


Q ss_pred             ccCcccCChhhHHHHHHHHHhhhCCCeEEE-----------Eeec---CCceEEEEE
Q 023645          236 VADQMVNDAKTISIRNFNKNLMEDERVSIS-----------MVPI---GDGMTICQK  278 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~lp~---~~G~~i~~~  278 (279)
                      ..+        .-++.|+   ...++++.+           ++|-   +||+-+|+.
T Consensus       237 ENE--------~vv~~~l---~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGFF~A~l  282 (284)
T d1sqga2         237 ENS--------LQIKAFL---QRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKL  282 (284)
T ss_dssp             GTH--------HHHHHHH---HHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEE
T ss_pred             hCH--------HHHHHHH---HhCCCcEEecCCCCCCCcEEECCCCCCcccEEEEEE
Confidence            221        1244444   446666542           2332   588988875

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.07  E-value=2.4e-10  Score=98.20  Aligned_cols=107  Identities=20%  Similarity=0.316  Sum_probs=87.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh---CCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---GVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ..+++||-||-|.|..+..+++..+ ..+++++|++++.++.+++.+...   ....+++++.+|+.+.+...    .++
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~----~~~  153 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA----AEG  153 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS----CTT
T ss_pred             CCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc----ccc
Confidence            4678999999999999998887544 569999999999999999987532   22578999999999887653    135


Q ss_pred             cEEEEEEeCCcc-------chHHHHHHHHccCCCCcEEEEeC
Q 023645          195 SYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       195 ~fDlI~id~~~~-------~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +||+|++|....       ...++++.+.+.|+|||+++..-
T Consensus       154 ~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         154 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            899999987521       14678999999999999999863

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.06  E-value=1.9e-09  Score=93.60  Aligned_cols=128  Identities=16%  Similarity=0.235  Sum_probs=101.5

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ..+......+...++...++.+|||+++|.|.=|..++..+...+.++++|.++..+...++++++.|..+ +.+...|.
T Consensus        98 ~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~  176 (313)
T d1ixka_          98 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSS  176 (313)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCG
T ss_pred             EEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-cccccccc
Confidence            34455556666677777888999999999999999999988878999999999999999999999999975 77777777


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~~-------------------------~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      ... +..     ...||.|++|++..                         ...+.+..+.++|||||.||...+-..-.
T Consensus       177 ~~~-~~~-----~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e  250 (313)
T d1ixka_         177 LHI-GEL-----NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE  250 (313)
T ss_dssp             GGG-GGG-----CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG
T ss_pred             ccc-ccc-----cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH
Confidence            644 222     57899999997510                         12446777789999999999877765443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=7.5e-10  Score=97.77  Aligned_cols=124  Identities=14%  Similarity=0.161  Sum_probs=96.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCc
Q 023645           97 RGSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  172 (279)
Q Consensus        97 ~~~~~~~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~  172 (279)
                      +.++.++++...+.+...+.    ..+..+|||+.||+|.+++.+++..   .+|+|+|.++.+++.|+++.+.+|..+ 
T Consensus       186 p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n-  261 (358)
T d1uwva2         186 PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQN-  261 (358)
T ss_dssp             SSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCS-
T ss_pred             CchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhccccc-
Confidence            34577888888776665433    3467799999999999999999863   599999999999999999999999975 


Q ss_pred             EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ++++.++..+.+......  ..+||+|++|++.....+.++.+.+. +|.-++.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~--~~~~d~vilDPPR~G~~~~~~~l~~~-~~~~ivYV  313 (358)
T d1uwva2         262 VTFYHENLEEDVTKQPWA--KNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYV  313 (358)
T ss_dssp             EEEEECCTTSCCSSSGGG--TTCCSEEEECCCTTCCHHHHHHHHHH-CCSEEEEE
T ss_pred             ceeeecchhhhhhhhhhh--hccCceEEeCCCCccHHHHHHHHHHc-CCCEEEEE
Confidence            999999987754332111  46799999999977777777777654 66655555

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=1.2e-09  Score=89.14  Aligned_cols=102  Identities=12%  Similarity=0.171  Sum_probs=87.7

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++.+|+|+|||.|..++.+|-..| +.+++.+|.+...+...++.....++.+ ++++++++.+...       ..+
T Consensus        62 ~~~~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~-------~~~  132 (207)
T d1jsxa_          62 PYLQGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPS-------EPP  132 (207)
T ss_dssp             GGCCSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCC-------CSC
T ss_pred             hhhcCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhhcc-------ccc
Confidence            345678999999999999999998887 7999999999999999999999999974 9999999976422       468


Q ss_pred             EEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ||+|++-+. ......++.+.+++++||.+++
T Consensus       133 fD~V~sRA~-~~~~~ll~~~~~~l~~~g~~~~  163 (207)
T d1jsxa_         133 FDGVISRAF-ASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             EEEEECSCS-SSHHHHHHHHTTSEEEEEEEEE
T ss_pred             cceehhhhh-cCHHHHHHHHHHhcCCCcEEEE
Confidence            999887654 4466788999999999999987

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.87  E-value=1e-08  Score=90.77  Aligned_cols=107  Identities=17%  Similarity=0.177  Sum_probs=89.5

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCC--------------cEEEEEcChh
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH--------------KVKIKHGLAA  181 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~--------------~v~~~~gd~~  181 (279)
                      +..++.+|||..||+|.-++..+...+ ..+|++.|+|+++++.+++|++.++..+              .+.+.+.|+.
T Consensus        42 ~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~  120 (375)
T d2dula1          42 NILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN  120 (375)
T ss_dssp             HHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH
T ss_pred             HHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh
Confidence            345788999999999999998887766 5699999999999999999999887643              4678888887


Q ss_pred             hHHHHHHhCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       182 ~~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+...     ...||+|.+|+ ......+++.+.+.++.||+|.+..
T Consensus       121 ~~~~~~-----~~~fDvIDiDP-fGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         121 RLMAER-----HRYFHFIDLDP-FGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HHHHHS-----TTCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhHhh-----cCcCCcccCCC-CCCcHHHHHHHHHHhccCCEEEEEe
Confidence            665543     56899999997 4556789999999999999999954

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.83  E-value=1.8e-08  Score=82.26  Aligned_cols=108  Identities=16%  Similarity=0.209  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      +.+...+++..++...++.+|||.|||+|.+...+.+..+....++|+|+++..+.          +..+..++++|...
T Consensus         3 TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~----------~~~~~~~~~~~~~~   72 (223)
T d2ih2a1           3 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD----------LPPWAEGILADFLL   72 (223)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC----------CCTTEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh----------hcccceeeeeehhc
Confidence            45667778888888888899999999999999888877776678999999987542          23346888888865


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCcc--------------------------------chHHHHHHHHccCCCCcEEEE
Q 023645          183 SLKALILNGEASSYDFAFVDAEKR--------------------------------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~--------------------------------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ...       ..+||+|+.+.+..                                .+..+++.+.++|++||.+++
T Consensus        73 ~~~-------~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1          73 WEP-------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             CCC-------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccc-------ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence            432       57899999876511                                134567888899999999766

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.82  E-value=7.7e-08  Score=80.26  Aligned_cols=99  Identities=15%  Similarity=0.140  Sum_probs=76.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ....+|||||||+|..+..++++.| +.+++..|. |+.       ++.++..++++++.+|+.+.         ...+|
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v-------i~~~~~~~rv~~~~gD~f~~---------~p~aD  140 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQV-------VENLSGSNNLTYVGGDMFTS---------IPNAD  140 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHH-------HTTCCCBTTEEEEECCTTTC---------CCCCS
T ss_pred             cCceEEEEecCCccHHHHHHHHhCC-CCeEEEecC-HHH-------HHhCcccCceEEEecCcccC---------CCCCc
Confidence            3457999999999999999999998 789999998 333       34456778999999999753         23579


Q ss_pred             EEEEeCC-----ccchHHHHHHHHccCCCC---cEEEEeCCCCCC
Q 023645          198 FAFVDAE-----KRMYQEYFELLLQLIRVG---GIIVIDNVLWHG  234 (279)
Q Consensus       198 lI~id~~-----~~~~~~~l~~~~~~Lk~g---G~lv~dd~~~~g  234 (279)
                      ++++...     .+.....|+.+.+.|+||   |.+++.+.+.+.
T Consensus       141 ~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~  185 (244)
T d1fp2a2         141 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK  185 (244)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred             EEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCC
Confidence            9987543     334567899999999998   666666655443

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.80  E-value=3.6e-08  Score=81.78  Aligned_cols=103  Identities=20%  Similarity=0.254  Sum_probs=86.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ...+++|||||.|.-++.++-..| +.+++.+|.+...+...+......++++ +.++++.+.+.....   ...++||+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~~~~~---~~~~~~D~  144 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRK---DVRESYDI  144 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCT---TTTTCEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhccccc---cccccceE
Confidence            467999999999999999998887 7899999999999999999999999975 899999886542110   01368999


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |++-+.. .....++.+.+++++||.+++
T Consensus       145 v~sRAva-~l~~ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         145 VTARAVA-RLSVLSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             EEEECCS-CHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEhhhh-CHHHHHHHHhhhcccCCEEEE
Confidence            9987653 456788999999999999987

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.80  E-value=1.7e-08  Score=84.40  Aligned_cols=99  Identities=15%  Similarity=0.093  Sum_probs=78.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ....+|||||||+|..+..++++.| +.+++.+|+ |+.       ++..+..++++++.+|+.+.+         ...|
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v-------i~~~~~~~ri~~~~gd~~~~~---------p~~D  141 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQV-------IENAPPLSGIEHVGGDMFASV---------PQGD  141 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHH-------HTTCCCCTTEEEEECCTTTCC---------CCEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecc-hhh-------hhccCCCCCeEEecCCccccc---------ccce
Confidence            4457999999999999999999998 789999998 333       345566788999999987532         3459


Q ss_pred             EEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       198 lI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                      ++++...     .+.....++.+.+.|+|||.|++.+.+.+.
T Consensus       142 ~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~  183 (244)
T d1fp1d2         142 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE  183 (244)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECS
T ss_pred             EEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecC
Confidence            9987654     334567899999999999999988876544

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.4e-08  Score=85.70  Aligned_cols=123  Identities=18%  Similarity=0.127  Sum_probs=90.7

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHH
Q 023645          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (279)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~  187 (279)
                      ..+...++...++.+|||+++|.|+-|..++..+...++|+++|+++..++..++++++.|..+ +.+...|+....+..
T Consensus        83 S~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~  161 (293)
T d2b9ea1          83 SCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSD  161 (293)
T ss_dssp             GGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTC
T ss_pred             ccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhhcccc
Confidence            3344455566778899999999999999999887767899999999999999999999999975 899999886542211


Q ss_pred             HhCCCCCcEEEEEEeCCccc---------------------------hHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 023645          188 ILNGEASSYDFAFVDAEKRM---------------------------YQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       188 ~~~~~~~~fDlI~id~~~~~---------------------------~~~~l~~~~~~Lk~gG~lv~dd~~~~g~  235 (279)
                      .   ..++||.|++|++...                           ....+..+. .++|||.||..-+-....
T Consensus       162 ~---~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~  232 (293)
T d2b9ea1         162 P---RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQE  232 (293)
T ss_dssp             G---GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGG
T ss_pred             c---ccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChh
Confidence            0   0267999999975110                           011233334 479999998876655443

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.75  E-value=1.3e-08  Score=88.57  Aligned_cols=116  Identities=12%  Similarity=0.049  Sum_probs=85.6

Q ss_pred             CCHHHHHHHHHHH----hhcCCCEEEEEcCccCHHHHHHHHHCC----CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEE
Q 023645          103 VSPDQAQLLAMLV----QILGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDARSLEVAKKYYERAGVSHKVK  174 (279)
Q Consensus       103 ~~~~~~~~l~~l~----~~~~~~~VLEiG~G~G~~t~~la~~~~----~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~  174 (279)
                      +++....++..++    ...++.+|||.|||+|.+...+...+.    ...+++|+|+++.++..|+.++...+..  ..
T Consensus        97 TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~--~~  174 (328)
T d2f8la1          97 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MT  174 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--hh
Confidence            4555555555443    344567899999999999988876542    2347999999999999999998877764  57


Q ss_pred             EEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc---------------------chHHHHHHHHccCCCCcEEEE
Q 023645          175 IKHGLAADSLKALILNGEASSYDFAFVDAEKR---------------------MYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       175 ~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~---------------------~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +.++|.....+       ..+||+|+.+++..                     .+..+++.+...|+|||.+++
T Consensus       175 ~~~~d~~~~~~-------~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~  241 (328)
T d2f8la1         175 LLHQDGLANLL-------VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  241 (328)
T ss_dssp             EEESCTTSCCC-------CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             hhccccccccc-------cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence            77888754322       57899999998631                     133468889999999997654

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.67  E-value=1.3e-07  Score=75.21  Aligned_cols=105  Identities=14%  Similarity=0.158  Sum_probs=81.4

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ...++..++|..+|.|+.+..+++.   +++|+|+|.++++++.+++.     ...++.++++++.+....+...+ .+.
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~-~~~   85 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALG-VER   85 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTT-CSC
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcC-CCc
Confidence            4567789999999999999999885   57999999999999888763     23579999999876544332222 578


Q ss_pred             EEEEEEeCCcc------------chHHHHHHHHccCCCCcEEEEeC
Q 023645          196 YDFAFVDAEKR------------MYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       196 fDlI~id~~~~------------~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +|.|+.|.+..            .....++.....|++||.+++-.
T Consensus        86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~  131 (182)
T d1wg8a2          86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA  131 (182)
T ss_dssp             EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence            99999997532            23346778889999999998744

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.65  E-value=8.3e-08  Score=79.56  Aligned_cols=101  Identities=9%  Similarity=0.053  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      ++....-+...+...++.+|||||||+|..|..+++.   ..+|++||+++.+++.+++.+..   .++++++++|+.+.
T Consensus         6 d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~---~~n~~i~~~D~l~~   79 (235)
T d1qama_           6 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDILQF   79 (235)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGGGC
T ss_pred             CHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhc---ccchhhhhhhhhhc
Confidence            3444444444445567889999999999999999987   35999999999999999887643   24699999999875


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHH
Q 023645          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~  216 (279)
                      ..      .......|+.+-+..-....+..+.
T Consensus        80 ~~------~~~~~~~vv~NLPYnIss~il~~ll  106 (235)
T d1qama_          80 KF------PKNQSYKIFGNIPYNISTDIIRKIV  106 (235)
T ss_dssp             CC------CSSCCCEEEEECCGGGHHHHHHHHH
T ss_pred             cc------cccccceeeeeehhhhhHHHHHHHH
Confidence            21      0223345667767655555555554

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.65  E-value=1.9e-08  Score=83.95  Aligned_cols=97  Identities=15%  Similarity=0.133  Sum_probs=73.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      +..+|||||||+|..+..++++.| +.+++.+|+.+. +       +.....++++++.+|+.+.+|         ..|+
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~~~~~P---------~ad~  142 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLPHV-I-------EDAPSYPGVEHVGGDMFVSIP---------KADA  142 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECTTT-T-------TTCCCCTTEEEEECCTTTCCC---------CCSC
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccHHh-h-------hhcccCCceEEecccccccCC---------Ccce
Confidence            357999999999999999999998 789999999543 2       334556789999999876432         2244


Q ss_pred             EEEeC-----CccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 023645          199 AFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (279)
Q Consensus       199 I~id~-----~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~  233 (279)
                      +++..     +.+.....++++.+.|+|||.+++.+...+
T Consensus       143 ~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~  182 (243)
T d1kyza2         143 VFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILP  182 (243)
T ss_dssp             EECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEEC
T ss_pred             EEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEec
Confidence            44322     244566789999999999998887776543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.64  E-value=2.1e-08  Score=80.74  Aligned_cols=105  Identities=17%  Similarity=0.190  Sum_probs=67.5

Q ss_pred             CCCEEEEEcCccCHHHHH----HHHHCC---CCCEEEEEeCChhHHHHHHHHH------------------HHhCCC---
Q 023645          119 GAQRCIEVGVYTGYSSLA----IALVLP---ESGCLVACERDARSLEVAKKYY------------------ERAGVS---  170 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~----la~~~~---~~~~v~~iD~s~~~~~~a~~~~------------------~~~g~~---  170 (279)
                      ++.+|+++|||+|.-+..    +.+...   ...+|+|+|+++.+++.|++..                  ...+..   
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            455999999999985433    333322   1347999999999999987421                  111110   


Q ss_pred             ---------CcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 023645          171 ---------HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       171 ---------~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                               ..+.+...+..+..+     ...++||+|||-..     .+.....++.+.+.|+|||+|++-
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQY-----NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSC-----CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eeehHHHHHHHHHHhhhhcccccc-----CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                     123333333322110     01478999999765     344567899999999999999984

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.4e-07  Score=76.81  Aligned_cols=102  Identities=19%  Similarity=0.193  Sum_probs=77.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      ++....-+...+...+...|||||+|.|..|..+++.   +.+|+++|+++.+++..++.+.......+++++.+|+.+.
T Consensus         6 d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~   82 (278)
T d1zq9a1           6 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT   82 (278)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             CHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence            4444444445555567789999999999999999987   3599999999999999999887666667899999999864


Q ss_pred             HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHH
Q 023645          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (279)
Q Consensus       184 l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~  216 (279)
                      .        ...++.|+.+-+..-....+..+.
T Consensus        83 ~--------~~~~~~vV~NLPY~Iss~il~~~~  107 (278)
T d1zq9a1          83 D--------LPFFDTCVANLPYQISSPFVFKLL  107 (278)
T ss_dssp             C--------CCCCSEEEEECCGGGHHHHHHHHH
T ss_pred             h--------hhhhhhhhcchHHHHHHHHHHHHH
Confidence            1        234567787777665556665554

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=3.4e-07  Score=72.66  Aligned_cols=100  Identities=19%  Similarity=0.232  Sum_probs=72.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHH--HHHHhCCCCCc
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEASS  195 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~~~~~~~~~~  195 (279)
                      .+..+|||+||+.|.|+..+.+..+..+.++++|+.+-.           .. +.+.++++|..+..  ..........+
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i-~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PI-VGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CC-TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------cc-CCceEeecccccchhhhhhhhhccCcc
Confidence            456799999999999999999887767899999998731           23 35899999986522  11111112578


Q ss_pred             EEEEEEeCCcc-----c---------hHHHHHHHHccCCCCcEEEEeC
Q 023645          196 YDFAFVDAEKR-----M---------YQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       196 fDlI~id~~~~-----~---------~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +|+|+.|....     .         ....+..+.+.|++||.+|+--
T Consensus        89 ~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~  136 (180)
T d1ej0a_          89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence            99999997521     1         2234555679999999999973

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.44  E-value=1.8e-08  Score=84.16  Aligned_cols=101  Identities=10%  Similarity=0.096  Sum_probs=71.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh
Q 023645          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (279)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (279)
                      .++....-+...+...+..+|||||||+|..|..+++.   +.+|++||+++.+++.+++.+.   ...+++++++|+.+
T Consensus        13 ~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~   86 (245)
T d1yuba_          13 TSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQ   86 (245)
T ss_dssp             CCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTT
T ss_pred             CCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh---hccchhhhhhhhhc
Confidence            33333334444555567789999999999999999987   3599999999999888876554   23469999999986


Q ss_pred             HHHHHHhCCCCCcEEEEEEeCCccchHHHHHHH
Q 023645          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELL  215 (279)
Q Consensus       183 ~l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~  215 (279)
                      .-  +    ....++.|+.+-+..-....+..+
T Consensus        87 ~~--~----~~~~~~~vv~NLPY~Ist~il~~~  113 (245)
T d1yuba_          87 FQ--F----PNKQRYKIVGNIPYHLSTQIIKKV  113 (245)
T ss_dssp             TT--C----CCSSEEEEEEECCSSSCHHHHHHH
T ss_pred             cc--c----ccceeeeEeeeeehhhhHHHHHHH
Confidence            42  1    135667777777655444444444

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=7e-07  Score=74.56  Aligned_cols=105  Identities=11%  Similarity=-0.045  Sum_probs=72.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      ++....-+...+...+++.|||||||.|..|..+++.   ..+|++||+++.+++..++.+.   ..++++++.+|+.+.
T Consensus         6 d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~~   79 (252)
T d1qyra_           6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMTF   79 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGGC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhh---hccchhHHhhhhhhh
Confidence            3444444445555667889999999999999999986   3589999999999988877443   235799999999873


Q ss_pred             -HHHHHhCCCCCcEEEEEEeCCccchHHHHHHHH
Q 023645          184 -LKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (279)
Q Consensus       184 -l~~~~~~~~~~~fDlI~id~~~~~~~~~l~~~~  216 (279)
                       +..+.+.  .++.-.|+.+-+..-....+..+.
T Consensus        80 ~~~~~~~~--~~~~~~vvgNlPY~Iss~Il~~l~  111 (252)
T d1qyra_          80 NFGELAEK--MGQPLRVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             CHHHHHHH--HTSCEEEEEECCTTTHHHHHHHHH
T ss_pred             cccccccc--cCCCeEEEecchHHHHHHHHHHhc
Confidence             2222111  123336667776655555555553

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.35  E-value=1.2e-06  Score=78.59  Aligned_cols=122  Identities=10%  Similarity=0.076  Sum_probs=95.1

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCC------------CEEEEEeCChhHHHHHHHHHHH
Q 023645           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPES------------GCLVACERDARSLEVAKKYYER  166 (279)
Q Consensus        99 ~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~------------~~v~~iD~s~~~~~~a~~~~~~  166 (279)
                      +..-++.....++..++......+|+|-.||+|.+...+.+.+...            ..++|+|+++.....|+-++-.
T Consensus       142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l  221 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  221 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence            4566788888888888887778899999999999998887765321            2499999999999999999887


Q ss_pred             hCCC-CcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc--------------------chHHHHHHHHccCCCCcEE
Q 023645          167 AGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR--------------------MYQEYFELLLQLIRVGGII  225 (279)
Q Consensus       167 ~g~~-~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~--------------------~~~~~l~~~~~~Lk~gG~l  225 (279)
                      .|.. +...+..+|..+..+       ..+||+|+.+++..                    ....+++.+..+|++||.+
T Consensus       222 ~g~~~~~~~i~~~d~l~~~~-------~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~  294 (425)
T d2okca1         222 HGIGTDRSPIVCEDSLEKEP-------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA  294 (425)
T ss_dssp             TTCCSSCCSEEECCTTTSCC-------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred             cCCccccceeecCchhhhhc-------ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeE
Confidence            7764 235677888764321       57899999987621                    1345889999999999976


Q ss_pred             EE
Q 023645          226 VI  227 (279)
Q Consensus       226 v~  227 (279)
                      ++
T Consensus       295 ~i  296 (425)
T d2okca1         295 AV  296 (425)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.18  E-value=7.8e-07  Score=73.87  Aligned_cols=76  Identities=12%  Similarity=0.184  Sum_probs=64.1

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC--------CCcEEEEEcChhhHHHHHHhCCC
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------SHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--------~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .+|||..+|.|.-+..++..   +++|+++|.+|......+..++++..        ..+++++++|+.+++...     
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-----  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----
T ss_pred             CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-----
Confidence            48999999999999999987   57999999999998888877765532        237999999999887654     


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      ...||+|++|+.
T Consensus       162 ~~~~DvIYlDPM  173 (250)
T d2oyra1         162 TPRPQVVYLDPM  173 (250)
T ss_dssp             SSCCSEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            567999999985

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=7.1e-06  Score=75.41  Aligned_cols=124  Identities=8%  Similarity=-0.006  Sum_probs=90.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCC-----------------CEEEEEeCChhHHHHHH
Q 023645           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPES-----------------GCLVACERDARSLEVAK  161 (279)
Q Consensus        99 ~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~-----------------~~v~~iD~s~~~~~~a~  161 (279)
                      +..-++.....++..++...++.+|+|-.||+|.+...+.+.+...                 ..++|+|+++.....|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            4556778888888888887778899999999999988776654211                 25899999999999999


Q ss_pred             HHHHHhCCCCc----EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc-----------------chHHHHHHHHccCC
Q 023645          162 KYYERAGVSHK----VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------------MYQEYFELLLQLIR  220 (279)
Q Consensus       162 ~~~~~~g~~~~----v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~-----------------~~~~~l~~~~~~Lk  220 (279)
                      -++--.+....    -.+..++........     ..+||+|+.+++..                 ....+++.+...|+
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~-----~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk  298 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGEN-----LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH  298 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHHT-----SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE
T ss_pred             HHHHhhcccccccccchhhhhhhhhhcccc-----cccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcc
Confidence            88876665421    235555554332211     47899999987621                 13458999999999


Q ss_pred             CCcEEEE
Q 023645          221 VGGIIVI  227 (279)
Q Consensus       221 ~gG~lv~  227 (279)
                      +||.+++
T Consensus       299 ~gGr~ai  305 (524)
T d2ar0a1         299 PGGRAAV  305 (524)
T ss_dssp             EEEEEEE
T ss_pred             ccCcEEE
Confidence            9997655

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.77  E-value=1.5e-05  Score=65.44  Aligned_cols=116  Identities=12%  Similarity=0.085  Sum_probs=69.6

Q ss_pred             CCHHHHHHHHHHHh--hcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh
Q 023645          103 VSPDQAQLLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (279)
Q Consensus       103 ~~~~~~~~l~~l~~--~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (279)
                      ++....++....-+  ..+..+|+|+|||.|.++..++...+ ...+.|+++--...+. .......+. +.+++..++.
T Consensus        48 ~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~d  124 (257)
T d2p41a1          48 VSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVD  124 (257)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCC
T ss_pred             cchHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEecCccccC-Ccccccccc-ccccchhhhh
Confidence            34444444333222  34566999999999999999987643 4577777773221000 000011111 2356665554


Q ss_pred             hhHHHHHHhCCCCCcEEEEEEeCCc---------cchHHHHHHHHccCCCCcEEEEe
Q 023645          181 ADSLKALILNGEASSYDFAFVDAEK---------RMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       181 ~~~l~~~~~~~~~~~fDlI~id~~~---------~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ...++       .+..|.|++|...         ......++.+.++|+|||-+++.
T Consensus       125 v~~l~-------~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         125 VFFIP-------PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             TTTSC-------CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             HHhcC-------CCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            33322       5789999999642         12345677778999999999985

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.70  E-value=4.4e-05  Score=59.85  Aligned_cols=107  Identities=16%  Similarity=0.213  Sum_probs=68.8

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      +..++.+||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....+..+......+.....
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~i~~~~~~~   99 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGADLTLNRRETSVEERRKAIMDITHGR   99 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCCEEEEECCCccchhheecccccc-ccccccccccccccccccc----ccceEEEeccccchHHHHHHHHHhhCCC
Confidence            345678999999873 667778888764 2389999999999888765    3432212222233333333332222245


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .+|+||-.....   ..++.+.+.|++||.+++=.+
T Consensus       100 g~Dvvid~vG~~---~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2         100 GADFILEATGDS---RALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             CEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             CceEEeecCCch---hHHHHHHHHhcCCCEEEEEee
Confidence            699988554332   346778899999999987554

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.62  E-value=6.4e-05  Score=59.81  Aligned_cols=110  Identities=18%  Similarity=0.152  Sum_probs=73.8

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .+...++.+||-+|||. |..+..+++... ..+|+++|.+++.++.|++.    |...-+.....+..+.+..+.   .
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~----Ga~~~~~~~~~~~~~~i~~~t---~   91 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQ----GFEIADLSLDTPLHEQIAALL---G   91 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCEEEETTSSSCHHHHHHHHH---S
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhc----cccEEEeCCCcCHHHHHHHHh---C
Confidence            35567888999999987 667777787765 56999999999998888763    432101111233333333332   1


Q ss_pred             CCcEEEEEEeCCc------------cchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          193 ASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       193 ~~~fDlI~id~~~------------~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ...+|++|-....            ......++.+.+.++|||.+++-.+.
T Consensus        92 g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~  142 (195)
T d1kola2          92 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  142 (195)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence            4579998854331            12346899999999999999987654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.55  E-value=7.7e-05  Score=58.18  Aligned_cols=106  Identities=21%  Similarity=0.277  Sum_probs=69.8

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .+...++.+||-+|||. |..+..+++... ..+|+++|.+++..+.+++    .|...-+.....+..+.+...   .+
T Consensus        22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~----lGa~~~i~~~~~~~~~~v~~~---t~   93 (174)
T d1jqba2          22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKF----YGATDILNYKNGHIEDQVMKL---TN   93 (174)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHH----HTCSEEECGGGSCHHHHHHHH---TT
T ss_pred             HhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHh----hCccccccccchhHHHHHHHH---hh
Confidence            34566788999999986 778888888764 2479999999988877764    443321222222233333332   12


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ...+|+||-.....   ..++.+.+.++|+|.+++-.+
T Consensus        94 g~G~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          94 GKGVDRVIMAGGGS---ETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             TSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             ccCcceEEEccCCH---HHHHHHHHHHhcCCEEEEEee
Confidence            35699988655433   346778899999999998543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=5.2e-05  Score=58.65  Aligned_cols=101  Identities=22%  Similarity=0.182  Sum_probs=66.0

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ....++++||-+|+| .|..+..+++..  +++|+++|.+++..+.+++    .|-..  .+...+-.+.....     .
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~----lGa~~--~i~~~~~~~~~~~~-----~   89 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGADH--YIATLEEGDWGEKY-----F   89 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSE--EEEGGGTSCHHHHS-----C
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhc----cCCcE--EeeccchHHHHHhh-----h
Confidence            345678899999998 567777777775  5799999999998887765    35332  22211111233332     5


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +.||+|+....... ...++.+.+.|+|+|.+++-.
T Consensus        90 ~~~d~vi~~~~~~~-~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          90 DTFDLIVVCASSLT-DIDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             SCEEEEEECCSCST-TCCTTTGGGGEEEEEEEEECC
T ss_pred             cccceEEEEecCCc-cchHHHHHHHhhccceEEEec
Confidence            68999886422111 112456789999999999854

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.42  E-value=0.0002  Score=55.61  Aligned_cols=103  Identities=20%  Similarity=0.275  Sum_probs=67.7

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      +..++.+||-+|+|. |..+..+++..+ ..+|+.+|.+++.++.+++    .|...-+.....|..+.+..+.    ++
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~----~Ga~~~i~~~~~~~~~~i~~~t----~g   95 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEIT----DG   95 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TS
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHH----cCCeEEEeCCCcCHHHHHHHHc----CC
Confidence            456778999999874 335566676665 4588999999988888766    3443212222223333333331    45


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .||+||......   ..++.+.++++|+|.+++-.+
T Consensus        96 g~D~vid~~G~~---~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          96 GVNFALESTGSP---EILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             CEEEEEECSCCH---HHHHHHHHTEEEEEEEEECCC
T ss_pred             CCcEEEEcCCcH---HHHHHHHhcccCceEEEEEee
Confidence            899998665433   467788999999999988544

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=0.00027  Score=60.52  Aligned_cols=60  Identities=10%  Similarity=0.004  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (279)
                      ....|||||+|.|..|..++.... ..+|+++|+++...+..++.++    .++++++++|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhhc
Confidence            456899999999999999987632 2489999999999988887654    35689999999754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.38  E-value=0.00074  Score=51.72  Aligned_cols=103  Identities=17%  Similarity=0.251  Sum_probs=68.1

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh----hhHHHHHHhC
Q 023645          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA----ADSLKALILN  190 (279)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~----~~~l~~~~~~  190 (279)
                      ...++.+||-+||| .|..+..+++..  +++|+++|.+++..+.|++.    |-.  ..+..-+.    .+....+...
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~~~~~~~~~~   94 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRSA   94 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHc----CCc--EEEeccccccccchhhhhhhcc
Confidence            45677899999988 566777788776  47999999999998888773    322  23322211    1122222111


Q ss_pred             CCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                       ....+|+||-....   ...++.+.++++++|.+++-..
T Consensus        95 -~g~g~D~vid~~g~---~~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          95 -IGDLPNVTIDCSGN---EKCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             -SSSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred             -cccCCceeeecCCC---hHHHHHHHHHHhcCCceEEEec
Confidence             13578988765432   3567788899999999998553

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00049  Score=52.99  Aligned_cols=106  Identities=14%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCC
Q 023645          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (279)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~  194 (279)
                      ...++.+||=+|+|. |..+..+++..+ ..+|+++|.+++.++.|++.    |....+.....+..+....+... ...
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~----Ga~~~~~~~~~~~~~~~~~~~~~-~g~   96 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEI----GADLVLQISKESPQEIARKVEGQ-LGC   96 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCSEEEECSSCCHHHHHHHHHHH-HTS
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHh----CCccccccccccccccccccccc-CCC
Confidence            445678999999975 456666777764 34899999999998887653    43321111112222222211111 146


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .+|+||-....   ...++.+.+++++||.+++-..
T Consensus        97 g~Dvvid~~G~---~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          97 KPEVTIECTGA---EASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             CCSEEEECSCC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CceEEEeccCC---chhHHHHHHHhcCCCEEEEEec
Confidence            78998865543   3467888999999999998554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00026  Score=54.74  Aligned_cols=100  Identities=12%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      +..++++||-.|+  +.|..++.+++..  ++++++++.+++..+.+++    .|...-+.....|..+.+....   ..
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t---~~   95 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV---GE   95 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH---CT
T ss_pred             CCCCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc----cCcccccccccccHHHHhhhhh---cc
Confidence            3457789999996  4667778888886  4799999988877766654    4554322222233333332222   24


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ..+|+|+....    ...++...+.|+|+|.++.-
T Consensus        96 ~g~d~v~d~~g----~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          96 KGIDIIIEMLA----NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             TCEEEEEESCH----HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCceEEeeccc----HHHHHHHHhccCCCCEEEEE
Confidence            67998885443    24678888999999999973

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.23  E-value=0.00071  Score=51.67  Aligned_cols=101  Identities=20%  Similarity=0.210  Sum_probs=64.6

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      +...++++||-+|+|. |..+..+++..  +.+|+++|.+++..+.+++    .|...-+.....|..+.+...     .
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~~~-----~   91 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK----LGASLTVNARQEDPVEAIQRD-----I   91 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH-----H
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc----cCccccccccchhHHHHHHHh-----h
Confidence            4556788999999874 55667777776  4799999999998877765    454321222222233322222     2


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+|.++.+...   ...++.+.+.|++||.+++=.
T Consensus        92 ~g~~~~i~~~~~---~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          92 GGAHGVLVTAVS---NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             SSEEEEEECCSC---HHHHHHHHTTEEEEEEEEECC
T ss_pred             cCCccccccccc---chHHHHHHHHhcCCcEEEEEE
Confidence            345555554433   245778899999999999843

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.09  E-value=0.00088  Score=51.89  Aligned_cols=105  Identities=12%  Similarity=0.188  Sum_probs=69.1

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC-hhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd-~~~~l~~~~~~~~  192 (279)
                      ....++.+||-+|||. |..++.+++... ..+|+.+|.+++..+.|++    .|...-+.....| ..........   
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~~---   95 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT---   95 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH---
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHH----hCCCcccCCccchhhhhhhHhhhh---
Confidence            3456778999999987 888888898875 4589999999998877766    3433211111112 1111111111   


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~dd~  230 (279)
                      .+.+|++|-....   ...++.+.+.+++| |.+++-.+
T Consensus        96 ~~G~d~vie~~G~---~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          96 AGGVDYSLDCAGT---AQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             TSCBSEEEESSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             cCCCcEEEEeccc---chHHHHHHHHhhcCCeEEEecCC
Confidence            4679999865443   35688899999996 99988443

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.02  E-value=0.0012  Score=50.46  Aligned_cols=105  Identities=15%  Similarity=0.198  Sum_probs=68.1

Q ss_pred             HhhcCCCEEEEEcCc--cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ....++.+||-+|++  .|..+..+++... ..+|+++|.+++..+.+++    .|..   .++..+..+..+...+...
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~   94 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGAD---YVINASMQDPLAEIRRITE   94 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTT
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHH----cCCc---eeeccCCcCHHHHHHHHhh
Confidence            345677899999963  4556666777654 4699999999988877765    3433   2233333333333332222


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      .+.||+||.....   ...++.+.+.++|||.+++-..
T Consensus        95 ~~~~d~vid~~g~---~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2          95 SKGVDAVIDLNNS---EKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             TSCEEEEEESCCC---HHHHTTGGGGEEEEEEEEECCS
T ss_pred             cccchhhhccccc---chHHHhhhhhcccCCEEEEecc
Confidence            4679988865432   3456778899999999988543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.87  E-value=0.0016  Score=49.90  Aligned_cols=96  Identities=16%  Similarity=0.190  Sum_probs=67.4

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       118 ~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      .+|.+|+-||+|. |..++..+..+  +++|+.+|.+++.++..+..+.     .+++....+-....+.+      ...
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~------~~a   96 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAV------AEA   96 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHH------HTC
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhh------ccC
Confidence            4678999999994 77788888887  4899999999999887776654     23566655554443333      467


Q ss_pred             EEEEEeCC---ccchHHHHHHHHccCCCCcEEE
Q 023645          197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       197 DlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      |+|+...-   .....-.-++..+.+|||.+||
T Consensus        97 DivI~aalipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1          97 DLLIGAVLVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             cEEEEeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence            99986542   2222223456788899998776

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.71  E-value=0.0038  Score=47.79  Aligned_cols=101  Identities=15%  Similarity=0.192  Sum_probs=64.6

Q ss_pred             hcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          117 ILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       117 ~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      ..++.+||-+|+|. |..+..+++... ..+|+++|.+++..+.+++    .|..   .++..+- +..+...+......
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~----~ga~---~~i~~~~-~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGAD---HVVDARR-DPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCS---EEEETTS-CHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhh----cccc---eeecCcc-cHHHHHHHhhCCCC
Confidence            35678999999875 445566676654 4689999999988777765    3332   2332221 12222222222457


Q ss_pred             EEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      +|+||......   ..++...+.|++||.+++-.
T Consensus       101 ~d~vid~~g~~---~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         101 VNVAMDFVGSQ---ATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEEEEESSCCH---HHHHHGGGGEEEEEEEEECC
T ss_pred             ceEEEEecCcc---hHHHHHHHHHhCCCEEEEEe
Confidence            99988665433   35788899999999999843

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.59  E-value=0.0036  Score=47.42  Aligned_cols=101  Identities=23%  Similarity=0.184  Sum_probs=64.3

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      ....++++||-.|+|. |..+..+++..  +++|+++|.+++..+.+++    .|...-+.....|..+.+...     .
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~-----~   91 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK-----V   91 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH-----H
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhcccc-----c
Confidence            3456778999999886 44555566665  4799999999998877755    444321111122333333333     2


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+|.++.+...   ...++...+.|+|||.+++-.
T Consensus        92 ~~~~~~v~~~~~---~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          92 GGVHAAVVTAVS---KPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             SSEEEEEESSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCceEEeecCC---HHHHHHHHHHhccCCceEecc
Confidence            345555555442   356788899999999999854

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0039  Score=47.81  Aligned_cols=104  Identities=15%  Similarity=0.148  Sum_probs=67.7

Q ss_pred             HhhcCCCEEEEEcCc--cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      .+..++++||-.|++  .|..+..+++..  +++|++++.+++..+.+++    .|-..-+.....|..+.+..+   .+
T Consensus        24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~----lGa~~vi~~~~~d~~~~v~~~---t~   94 (179)
T d1qora2          24 YEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEI---TG   94 (179)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHH---TT
T ss_pred             hCCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHh----cCCeEEEECCCCCHHHHHHHH---hC
Confidence            345667899998655  466777788875  5899999999998877764    454322222233343333332   22


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      ...+|+|+-....+    .++.....++++|.+++-...
T Consensus        95 g~g~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2          95 GKKVRVVYDSVGRD----TWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             TCCEEEEEECSCGG----GHHHHHHTEEEEEEEEECCCT
T ss_pred             CCCeEEEEeCccHH----HHHHHHHHHhcCCeeeecccc
Confidence            46799876544432    466788999999988874433

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.43  E-value=0.0049  Score=47.39  Aligned_cols=104  Identities=14%  Similarity=0.156  Sum_probs=63.8

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC--hhhHHHHHHhCC
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL--AADSLKALILNG  191 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd--~~~~l~~~~~~~  191 (279)
                      .+..++.+||-+|||. |..+..+++... ..+|+++|.+++.++.+++    .|-..-+.....|  ..+.....    
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~----lGa~~~i~~~~~d~~~~~~~~~~----   93 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEK----   93 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHH----cCCcEEEcCCCchhHHHHHHHHh----
Confidence            3456788999999975 345555676654 4689999999999988876    3443222222223  11222211    


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCC-CcEEEEeCC
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRV-GGIIVIDNV  230 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~-gG~lv~dd~  230 (279)
                      ..+.+|.||......   ..++.....+++ +|.+++-.+
T Consensus        94 ~~~G~d~vid~~g~~---~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2          94 TNGGVDYAVECAGRI---ETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             TTSCBSEEEECSCCH---HHHHHHHHTBCTTTCEEEECCC
T ss_pred             cCCCCcEEEEcCCCc---hHHHHHHHHHHHhcCceEEEEE
Confidence            146799998765433   345556655555 588887443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.38  E-value=0.0044  Score=47.75  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=62.6

Q ss_pred             hcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcCh-hhHHHHHHhCCCCC
Q 023645          117 ILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNGEAS  194 (279)
Q Consensus       117 ~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~-~~~l~~~~~~~~~~  194 (279)
                      ..++.+|+=+|+|. |..+..+++... ..+|+++|.+++.++.|++.=    -..-+.....+. .+.......   ..
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~G----A~~~in~~~~~~~~~~~~~~~~---g~   98 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAVG----ATECISPKDSTKPISEVLSEMT---GN   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHHT----CSEEECGGGCSSCHHHHHHHHH---TS
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhcC----CcEEECccccchHHHHHHHHhc---cc
Confidence            45678999999984 445566677664 469999999999999888743    222121122221 111111111   46


Q ss_pred             cEEEEEEeCCccchHHHHHHHHccC-CCCcEEEEeCCC
Q 023645          195 SYDFAFVDAEKRMYQEYFELLLQLI-RVGGIIVIDNVL  231 (279)
Q Consensus       195 ~fDlI~id~~~~~~~~~l~~~~~~L-k~gG~lv~dd~~  231 (279)
                      .+|.++......   ..++.....+ +++|.+++-.+.
T Consensus        99 G~d~vi~~~g~~---~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2          99 NVGYTFEVIGHL---ETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             CCCEEEECSCCH---HHHHHHHTTSCTTTCEEEECSCC
T ss_pred             cceEEEEeCCch---HHHHHHHHHhhcCCeEEEEEEcc
Confidence            799888766533   2344444444 555888885544

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.38  E-value=0.0032  Score=48.51  Aligned_cols=99  Identities=15%  Similarity=0.163  Sum_probs=63.2

Q ss_pred             hhcCCCEEEEEc--CccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          116 QILGAQRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       116 ~~~~~~~VLEiG--~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      +..++++||-.|  .|.|..++.+++..  +++++++..+++..+.+++    .|...-+.....|..+.+...   ...
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~---t~~   92 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILEL---TDG   92 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHH---TTT
T ss_pred             CCCCCCEEEEECCCCCcccccchhhccc--cccceeeeccccccccccc----ccccccccCCccCHHHHHHHH---hCC
Confidence            345678999877  34566777788776  4789988888876665553    454421221222333333222   224


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ..||+||.....    +.++.+.+.|+++|.++.
T Consensus        93 ~g~d~v~d~~g~----~~~~~~~~~l~~~G~~v~  122 (183)
T d1pqwa_          93 YGVDVVLNSLAG----EAIQRGVQILAPGGRFIE  122 (183)
T ss_dssp             CCEEEEEECCCT----HHHHHHHHTEEEEEEEEE
T ss_pred             CCEEEEEecccc----hHHHHHHHHhcCCCEEEE
Confidence            679999965542    457778899999999987

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.20  E-value=0.0098  Score=45.08  Aligned_cols=89  Identities=20%  Similarity=0.224  Sum_probs=57.0

Q ss_pred             EEEEEcCccCHHHHHHHHHC---CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      +|+=||||  ..+..+++.+   ....+|+++|.+++..+.+++.    +..+  ... .+.... .       ....|+
T Consensus         3 ~I~IIG~G--~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~--~~~-~~~~~~-~-------~~~~dl   65 (171)
T d2g5ca2           3 NVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID--EGT-TSIAKV-E-------DFSPDF   65 (171)
T ss_dssp             EEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS--EEE-SCGGGG-G-------GTCCSE
T ss_pred             EEEEEccC--HHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcch--hhh-hhhhhh-h-------cccccc
Confidence            68889985  4444333332   2245899999999988777653    3322  111 122111 1       346799


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      |++..+.....+.++.+.+.++++. +++|
T Consensus        66 Iila~p~~~~~~vl~~l~~~~~~~~-ii~d   94 (171)
T d2g5ca2          66 VMLSSPVRTFREIAKKLSYILSEDA-TVTD   94 (171)
T ss_dssp             EEECSCHHHHHHHHHHHHHHSCTTC-EEEE
T ss_pred             ccccCCchhhhhhhhhhhccccccc-cccc
Confidence            9998888888888999888888864 4444

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.011  Score=44.79  Aligned_cols=98  Identities=19%  Similarity=0.258  Sum_probs=64.6

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      .+..++++||-+|+|. |..+..+++..  +++++++|.+++..+.+++    .|..   .++.-.-.+....     ..
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~----lGad---~~i~~~~~~~~~~-----~~   91 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAA-----HL   91 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHT-----TT
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhc----cCCc---EEEECchhhHHHH-----hc
Confidence            4566788999999873 66677778776  4788899999988776654    4443   2222221111111     14


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      ..+|.+|.......   .++...++++++|.+++-.
T Consensus        92 ~~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          92 KSFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             TCEEEEEECCSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred             CCCceeeeeeecch---hHHHHHHHHhcCCEEEEec
Confidence            67999987654332   3567789999999999844

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.18  E-value=0.016  Score=44.13  Aligned_cols=95  Identities=15%  Similarity=0.117  Sum_probs=62.6

Q ss_pred             HhhcCCCEEEEEcC-c-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGV-Y-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~-G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~  192 (279)
                      ....++++||-.|. | .|..++.+++..  +++|++++.+++..+.+++    .|.+.  .+   |..+.......   
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~----lGa~~--~i---~~~~~~~~~~~---   88 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAEE--AA---TYAEVPERAKA---   88 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCSE--EE---EGGGHHHHHHH---
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccc----cccce--ee---ehhhhhhhhhc---
Confidence            44567889999884 3 466777788876  4799999999987776654    45432  22   22232222211   


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ...+|+||--..     ..++...+.|++||.++.-
T Consensus        89 ~~g~D~v~d~~G-----~~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          89 WGGLDLVLEVRG-----KEVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             TTSEEEEEECSC-----TTHHHHHTTEEEEEEEEEC
T ss_pred             cccccccccccc-----hhHHHHHHHHhcCCcEEEE
Confidence            467999875322     2367788999999999874

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.00  E-value=0.0036  Score=51.16  Aligned_cols=107  Identities=13%  Similarity=0.116  Sum_probs=76.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC---CC------------------------------------CCEEEEEeCChhHHHH
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVL---PE------------------------------------SGCLVACERDARSLEV  159 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~---~~------------------------------------~~~v~~iD~s~~~~~~  159 (279)
                      .+..++|--||+|.+.+..+...   ++                                    ..++++.|+++++++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            45579999999999988766421   10                                    1246788889988888


Q ss_pred             H---HHHHHHhCCCCcEEEEEcChhhHHH--HHHhCCCCCcEEEEEEeCCc------------cchHHHHHHHHccCCCC
Q 023645          160 A---KKYYERAGVSHKVKIKHGLAADSLK--ALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVG  222 (279)
Q Consensus       160 a---~~~~~~~g~~~~v~~~~gd~~~~l~--~~~~~~~~~~fDlI~id~~~------------~~~~~~l~~~~~~Lk~g  222 (279)
                      |   ++|++.+|+.+.+.+...|+++..+  ....   ....++|+++++.            +.+..++..+.+.+...
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~---~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~  206 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLA---GSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH  206 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHT---TCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhccC---CCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCC
Confidence            8   5689999999999999999865322  2111   3567899999762            12556666677778776


Q ss_pred             cEEEEe
Q 023645          223 GIIVID  228 (279)
Q Consensus       223 G~lv~d  228 (279)
                      .++++.
T Consensus       207 s~~~it  212 (249)
T d1o9ga_         207 AVIAVT  212 (249)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            666664

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.98  E-value=0.014  Score=44.45  Aligned_cols=104  Identities=13%  Similarity=0.157  Sum_probs=62.1

Q ss_pred             HhhcCCCEEEEEcCccCH-HHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCC
Q 023645          115 VQILGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~-~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~  193 (279)
                      .+..++.+||-+|+|.+. ++..+++... ..+|+++|.+++..+.+++.    |...  .+...+..+...........
T Consensus        24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~----Ga~~--~i~~~~~~~~~~~~~~~~~~   96 (176)
T d2jhfa2          24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEV----GATE--CVNPQDYKKPIQEVLTEMSN   96 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCSE--EECGGGCSSCHHHHHHHHTT
T ss_pred             hCCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHh----CCee--EEecCCchhHHHHHHHHHhc
Confidence            345677899999996443 5555666664 57999999999998887664    3321  22212211111111111114


Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEEe
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVID  228 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~d  228 (279)
                      +.+|+||......   ..++.+...+++| |.+++-
T Consensus        97 ~G~D~vid~~G~~---~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          97 GGVDFSFEVIGRL---DTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             SCBSEEEECSCCH---HHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCCEEEecCCch---hHHHHHHHHHhcCCcceEEe
Confidence            6799988765533   3455666777776 666653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.79  E-value=0.011  Score=44.90  Aligned_cols=101  Identities=12%  Similarity=0.177  Sum_probs=62.4

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEE--cChhhHHHHHHhCC
Q 023645          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG  191 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~~~~~~  191 (279)
                      .+..++.+||-.|+| .|..++.+++... ..+|+++|.+++..+.+++    .|-..-+....  .+..+.+...    
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~----lGa~~~i~~~~~~~~~~~~~~~~----   94 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEM----   94 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHH----hCCcEEEeCCchhhHHHHHHHHH----
Confidence            445678899999887 3445566676664 4689999999998887765    34332111111  1111222222    


Q ss_pred             CCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       192 ~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ..+.+|+||-.....   ..++.+..++++||.+++
T Consensus        95 ~~~g~D~vid~~G~~---~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2          95 TDGGVDYSFECIGNV---KVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             TTSCBSEEEECSCCH---HHHHHHHHTBCTTTCEEE
T ss_pred             cCCCCcEeeecCCCH---HHHHHHHHhhcCCceeEE
Confidence            146799998765432   456778889999866654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.51  E-value=0.016  Score=46.45  Aligned_cols=53  Identities=9%  Similarity=0.211  Sum_probs=41.5

Q ss_pred             HHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHH
Q 023645          110 LLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  165 (279)
Q Consensus       110 ~l~~l~~~--~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~  165 (279)
                      ++..++..  .++..|||.-||+|..+....+.   +-+.+|+|++++.++.|+++++
T Consensus       201 L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence            44444443  45679999999999877765553   3589999999999999999876

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.44  E-value=0.02  Score=43.88  Aligned_cols=103  Identities=16%  Similarity=0.162  Sum_probs=65.5

Q ss_pred             HHHhhcCCCEEEEEcCcc--CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhC
Q 023645          113 MLVQILGAQRCIEVGVYT--GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (279)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~--G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~  190 (279)
                      ...+..++++||-.|++.  |..+..+++..  +++|+++..+++..+.+++    .|...-+.....+..+......  
T Consensus        23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~~~--   94 (182)
T d1v3va2          23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKA--   94 (182)
T ss_dssp             TTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHH--
T ss_pred             HHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHh----hhhhhhcccccccHHHHHHHHh--
Confidence            344556788999888754  55667778776  4899999999887666554    4543212212222222221111  


Q ss_pred             CCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       191 ~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                       ....+|+||-...    .+.++...+.|++||.++.-
T Consensus        95 -~~~Gvd~v~D~vG----~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          95 -SPDGYDCYFDNVG----GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             -CTTCEEEEEESSC----HHHHHHHGGGEEEEEEEEEC
T ss_pred             -hcCCCceeEEecC----chhhhhhhhhccCCCeEEee
Confidence             2467999875443    24678899999999999974

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.24  E-value=0.065  Score=41.09  Aligned_cols=96  Identities=16%  Similarity=0.151  Sum_probs=61.8

Q ss_pred             CEEEEEc--CccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          121 QRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       121 ~~VLEiG--~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      ++||-.|  .|.|..++.+++.++ ..+|+++..+++......   +..|-..-+.....+..+.+....    ...+|+
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~G-a~~vi~~~~~~e~~~~l~---~~~gad~vi~~~~~~~~~~~~~~~----~~GvDv  103 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLG-CSRVVGICGTQEKCLFLT---SELGFDAAVNYKTGNVAEQLREAC----PGGVDV  103 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTT-CSEEEEEESSHHHHHHHH---HHSCCSEEEETTSSCHHHHHHHHC----TTCEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcC-CcceecccchHHHHhhhh---hcccceEEeeccchhHHHHHHHHh----ccCceE
Confidence            6899877  467889999999875 346777777765543322   234443323333334444444431    457999


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ||-...    .+.++...+.|++||.++.-
T Consensus       104 v~D~vG----g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         104 YFDNVG----GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             EEESSC----HHHHHHHHTTEEEEEEEEEC
T ss_pred             EEecCC----chhHHHHhhhccccccEEEe
Confidence            974433    24678899999999999863

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.13  E-value=0.025  Score=46.90  Aligned_cols=95  Identities=13%  Similarity=-0.006  Sum_probs=62.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      .+|||+.||.|.++.-+-++   +. .+.++|+++.+.+..+.|+.       -.++.+|..+.....     -...|++
T Consensus         1 mk~~~lF~G~Gg~~~gl~~a---G~~~~~a~e~d~~a~~~~~~N~~-------~~~~~~Di~~~~~~~-----~~~~dll   65 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKA---GFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDE-----FPKCDGI   65 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHH---TCEEEEEEECCHHHHHHHHHHCC-------SEEEESCTTTSCGGG-----SCCCSEE
T ss_pred             CeEEEeCcCcCHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHHCC-------CCCccCChhhCCHhH-----cccccEE
Confidence            37999999999999888765   33 45699999988877666642       256778887643221     3578999


Q ss_pred             EEeCC------------ccchH-HH---HHHHHccCCCCcEEEEeCCC
Q 023645          200 FVDAE------------KRMYQ-EY---FELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       200 ~id~~------------~~~~~-~~---l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +...+            ..+.. ..   +-.+...++|. ++++.||-
T Consensus        66 ~~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk-~~~lENV~  112 (324)
T d1dcta_          66 IGGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAENVK  112 (324)
T ss_dssp             EECCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCS-EEEEEEEG
T ss_pred             eecccccccccccccccccccccchHHHHHHHHHhhCCc-eeeccccc
Confidence            86543            11111 11   22234667885 88888883

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.06  E-value=0.037  Score=41.85  Aligned_cols=102  Identities=14%  Similarity=0.145  Sum_probs=59.9

Q ss_pred             HhhcCCCEEEEEcCccCH-HHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcC-hhhHHHHHHhCCC
Q 023645          115 VQILGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNGE  192 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~-~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd-~~~~l~~~~~~~~  192 (279)
                      .+..++.+|+-+|+|.+. .+..++.... ..+|+++|.+++..+.+++    .|-..-+.....+ ..+......   .
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~----~GAd~~in~~~~~~~~~~~~~~~---~   95 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKM---T   95 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHH---H
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHH----cCCcEEEcCCCcchhHHHHHHhh---c
Confidence            345677899999998744 4455555554 5699999999998877765    4433211111111 111111111   1


Q ss_pred             CCcEEEEEEeCCccchHHHHHHHHccCCCC-cEEEE
Q 023645          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVI  227 (279)
Q Consensus       193 ~~~fDlI~id~~~~~~~~~l~~~~~~Lk~g-G~lv~  227 (279)
                      ...+|+|+......   ..++.+..++++| |++++
T Consensus        96 ~~G~d~vid~~G~~---~~~~~a~~~~~~g~~~~~~  128 (175)
T d1cdoa2          96 NGGVDFSLECVGNV---GVMRNALESCLKGWGVSVL  128 (175)
T ss_dssp             TSCBSEEEECSCCH---HHHHHHHHTBCTTTCEEEE
T ss_pred             cCCcceeeeecCCH---HHHHHHHHHhhCCCcceeE
Confidence            46799998765533   3455666666665 55554

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.11  Score=41.98  Aligned_cols=84  Identities=18%  Similarity=0.181  Sum_probs=61.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILN  190 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~~  190 (279)
                      .+++.+|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.++..+...++.++++|..+.      .....+.
T Consensus         8 lk~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            56889999997755 566666654 236799999999999999888888887777889999998641      1222221


Q ss_pred             CCCCcEEEEEEeCC
Q 023645          191 GEASSYDFAFVDAE  204 (279)
Q Consensus       191 ~~~~~fDlI~id~~  204 (279)
                        -+.+|+++.++.
T Consensus        87 --~g~iD~lVnnAg   98 (257)
T d1xg5a_          87 --HSGVDICINNAG   98 (257)
T ss_dssp             --HCCCSEEEECCC
T ss_pred             --cCCCCEEEeccc
Confidence              367999887653

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.96  E-value=0.036  Score=44.93  Aligned_cols=56  Identities=9%  Similarity=-0.002  Sum_probs=44.3

Q ss_pred             HHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh
Q 023645          109 QLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  167 (279)
Q Consensus       109 ~~l~~l~~~--~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~  167 (279)
                      .++..++..  .++..|||.-+|+|..+.+....   +-+.+|+|++++..+.|+++++..
T Consensus       195 ~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         195 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            344444443  46779999999999888776665   349999999999999999999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.91  E-value=0.042  Score=41.17  Aligned_cols=86  Identities=15%  Similarity=0.133  Sum_probs=56.4

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~  200 (279)
                      +|.=||+  |..+..+++.+. .+.+|+++|.+++..+.+++    .+..+   ....+. +.         -...|+||
T Consensus         2 kI~iIG~--G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~-~~---------~~~~DiIi   62 (165)
T d2f1ka2           2 KIGVVGL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLVD---EAGQDL-SL---------LQTAKIIF   62 (165)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTSCS---EEESCG-GG---------GTTCSEEE
T ss_pred             EEEEEee--cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhccc---eeeeec-cc---------cccccccc
Confidence            5777877  444444444432 25699999999987766654    33322   111111 21         25679999


Q ss_pred             EeCCccchHHHHHHHHccCCCCcEEE
Q 023645          201 VDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       201 id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      +..+.....+.++++.+.++++.+++
T Consensus        63 lavp~~~~~~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          63 LCTPIQLILPTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             ECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             ccCcHhhhhhhhhhhhhhccccccee
Confidence            98887778889999999988887664

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.033  Score=46.55  Aligned_cols=74  Identities=14%  Similarity=0.053  Sum_probs=49.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCCE-EEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEE
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDl  198 (279)
                      |.+|+|+.||.|..+..+-.+.- +.+ +.++|+++.+.+..+.|+.      ...++.+|..+.......   ...+|+
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~-~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~---~~~~Dl   71 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCI-PAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFD---RLSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTC-SEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHH---HHCCSE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCC-CCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcC---CCCccE
Confidence            56899999999998887765421 233 6799999988877776642      245667777654222211   236899


Q ss_pred             EEEeC
Q 023645          199 AFVDA  203 (279)
Q Consensus       199 I~id~  203 (279)
                      ++...
T Consensus        72 l~ggp   76 (343)
T d1g55a_          72 ILMSP   76 (343)
T ss_dssp             EEECC
T ss_pred             EEeec
Confidence            87654

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.69  E-value=0.019  Score=47.44  Aligned_cols=46  Identities=7%  Similarity=-0.046  Sum_probs=38.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHH
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  166 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~  166 (279)
                      .++..|||.-||+|..+......   +-+.+|+|++++.++.|++++..
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             cCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHh
Confidence            46789999999999877765553   35899999999999999988764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=94.45  E-value=0.028  Score=43.33  Aligned_cols=108  Identities=11%  Similarity=0.088  Sum_probs=64.3

Q ss_pred             HhhcCCCEEEEEcCc---cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH---HHHHH
Q 023645          115 VQILGAQRCIEVGVY---TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS---LKALI  188 (279)
Q Consensus       115 ~~~~~~~~VLEiG~G---~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~---l~~~~  188 (279)
                      ....++.+||=+..|   .|..++.+++..  +++++++--+++..+...+.+++.|-..-+.....+..+.   .....
T Consensus        24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~  101 (189)
T d1gu7a2          24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWI  101 (189)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHH
T ss_pred             hCCCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHH
Confidence            345566778877333   456777788886  4788887666666666666677777654222211222222   12111


Q ss_pred             hCCCCCcEEEEEEeCCccchHHHHHHHHccCCCCcEEEEeC
Q 023645          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd  229 (279)
                      .. ....+|+||-...    .+.++...+.|+++|.++.-.
T Consensus       102 ~~-~g~~vdvv~D~vg----~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         102 KQ-SGGEAKLALNCVG----GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HH-HTCCEEEEEESSC----HHHHHHHHHTSCTTCEEEECC
T ss_pred             hh-ccCCceEEEECCC----cchhhhhhhhhcCCcEEEEEC
Confidence            11 1357998883322    234677889999999998743

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.41  E-value=0.017  Score=46.34  Aligned_cols=51  Identities=20%  Similarity=0.202  Sum_probs=39.6

Q ss_pred             EEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc----------c-------hHHHHHHHHccCCCCcEEEEe
Q 023645          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKR----------M-------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       174 ~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~----------~-------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++++||..+.++.+.    ++++|+|+.|++..          .       ....++++.++|+|||.+++.
T Consensus         6 ~i~~gDcle~l~~lp----d~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVE----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSC----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCc----CCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            588999999988873    67899999998621          1       234566788999999988764

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=94.38  E-value=0.064  Score=44.59  Aligned_cols=95  Identities=15%  Similarity=0.178  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCC-EEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      .+.+|||+.||.|.++..+-++   +. .+.++|+++.+++..+.|+...        .++|..+.....     -..+|
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a---G~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~~-----~~~~D   73 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC---GAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEKT-----IPDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT---TCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGGG-----SCCCS
T ss_pred             CCCeEEEECccccHHHHHHHHC---CCeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchhh-----cceee
Confidence            4679999999999999988764   33 4677999999999888887421        246776543221     35789


Q ss_pred             EEEEeCC----------------cc-chHHHHHHHHccCCCCcEEEEeCCC
Q 023645          198 FAFVDAE----------------KR-MYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       198 lI~id~~----------------~~-~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      +++...+                .. .+..++ .+.+.++|. ++++.||-
T Consensus        74 ll~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~-~~i~~~kP~-~~~lENV~  122 (327)
T d2c7pa1          74 ILCAGFPCQAFSISGKQKGFEDSRGTLFFDIA-RIVREKKPK-VVFMENVK  122 (327)
T ss_dssp             EEEEECCCTTTCTTSCCCGGGSTTSCHHHHHH-HHHHHHCCS-EEEEEEEG
T ss_pred             eeecccccchhhhhhhhcCCcccchhHHHHHH-HHHhccCCc-EEecccch
Confidence            9986543                11 122333 344667885 88888884

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.36  E-value=0.036  Score=42.69  Aligned_cols=110  Identities=18%  Similarity=0.151  Sum_probs=64.3

Q ss_pred             hcCCCEEEEEcCcc-CHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC---CC--cE------------EEEEc
Q 023645          117 ILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---SH--KV------------KIKHG  178 (279)
Q Consensus       117 ~~~~~~VLEiG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~---~~--~v------------~~~~g  178 (279)
                      ..+|.+|+-||+|. |..++..|..+  +++|+.+|.+++..+..+......-.   ..  ..            ++...
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~  103 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK  103 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CC
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHH
Confidence            45788999999995 66777788887  48999999999988777764321100   00  00            01111


Q ss_pred             ChhhHHHHHHhCCCCCcEEEEEEeCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 023645          179 LAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (279)
Q Consensus       179 d~~~~l~~~~~~~~~~~fDlI~id~~---~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g  234 (279)
                       ..+.+...     -...|+|+...-   ...+.-.-+.+.+.+|||.+||==.+-..|
T Consensus       104 -~~~~l~~~-----l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGG  156 (183)
T d1l7da1         104 -QAEAVLKE-----LVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGG  156 (183)
T ss_dssp             -HHHHHHHH-----HTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTC
T ss_pred             -HHHHHHHH-----HHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCC
Confidence             11112221     146899987542   222222345678899999887633333344

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.35  E-value=0.13  Score=36.80  Aligned_cols=92  Identities=16%  Similarity=0.116  Sum_probs=58.3

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDF  198 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~fDl  198 (279)
                      +|+=+|+  |..+..+++.+. .+..|+.+|.+++.++.+++.+       .+.++.||+.+.  +...    +-...|.
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~----~i~~a~~   68 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDA----GIEDADM   68 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHT----TTTTCSE
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhc----Chhhhhh
Confidence            5666665  888888887663 3468999999999887665421       257889998753  3332    1357888


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEE
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv  226 (279)
                      +++-.......-......+.+.+.-+++
T Consensus        69 vv~~t~~d~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          69 YIAVTGKEEVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             EEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             hcccCCcHHHHHHHHHHHHHcCCceEEE
Confidence            7764443332233444456667765554

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.20  E-value=0.014  Score=47.45  Aligned_cols=52  Identities=17%  Similarity=0.135  Sum_probs=40.7

Q ss_pred             EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCc----------cch----HHHHHHHHccCCCCcEEEEe
Q 023645          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------RMY----QEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~----------~~~----~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      -.++.||..+.+..+.    ++++|+||.|++.          ..+    ...++++.++|+|||.+++.
T Consensus         5 ~~~~~~D~le~l~~l~----d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKLP----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             EEEEECCHHHHHHTSC----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEechHHHHHhhCc----CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            4688899999888773    6899999999872          123    44567788999999988873

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=93.88  E-value=0.049  Score=47.21  Aligned_cols=53  Identities=15%  Similarity=0.107  Sum_probs=44.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHHHHHHHHHHHhCC
Q 023645          117 ILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGV  169 (279)
Q Consensus       117 ~~~~~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~  169 (279)
                      ..+...++|||+-.|.++..++...+. ..+|+++|++|...+..+++++..+.
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            345679999999999999988876542 36999999999999999999887654

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=93.77  E-value=0.53  Score=38.73  Aligned_cols=109  Identities=13%  Similarity=0.113  Sum_probs=70.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCC--CCcEEEEEcChhhH-HHHHHhCC-CCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAADS-LKALILNG-EAS  194 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~v~~~~gd~~~~-l~~~~~~~-~~~  194 (279)
                      ..+.|+.+|||.=.-...+  ..+.+.+++=+|. |+.++.-++.+.+.+.  ..+..++..|..+. ...+...+ +.+
T Consensus        89 g~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~  165 (297)
T d2uyoa1          89 GIRQFVILASGLDSRAYRL--DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  165 (297)
T ss_dssp             TCCEEEEETCTTCCHHHHS--CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCcccCChhhhc--CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCC
Confidence            4567888999655443332  2344567888885 7888887888887654  34567777777653 33443332 223


Q ss_pred             cEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       195 ~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ..-+++.-+.     .+.....++.+.....||+.|++|-+
T Consensus       166 ~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         166 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            3334444432     45567788889899999999999854

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.73  E-value=0.074  Score=40.60  Aligned_cols=98  Identities=12%  Similarity=0.186  Sum_probs=60.6

Q ss_pred             cCCCEEEEEcCc--cCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCc
Q 023645          118 LGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (279)
Q Consensus       118 ~~~~~VLEiG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~  195 (279)
                      .++++||-.|.+  .|..++.+++..  +++|+++.-+++..+.+++    .|-..-+. ...+..+....    -..+.
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~----lGa~~vi~-~~~~~~~~~~~----~~~~g   98 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAKEVLA-REDVMAERIRP----LDKQR   98 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCSEEEE-CC-------------CCSCC
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHh----cccceeee-cchhHHHHHHH----hhccC
Confidence            446789988854  455667778876  5899999999888777764    34432121 11111111111    12568


Q ss_pred             EEEEEEeCCccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       196 fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      +|+||-.....    .++...+.|++||.++.-..
T Consensus        99 vD~vid~vgg~----~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2          99 WAAAVDPVGGR----TLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             EEEEEECSTTT----THHHHHHTEEEEEEEEECSC
T ss_pred             cCEEEEcCCch----hHHHHHHHhCCCceEEEeec
Confidence            99877544322    47788999999999997444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.53  E-value=0.092  Score=39.52  Aligned_cols=100  Identities=14%  Similarity=0.129  Sum_probs=58.9

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHh--CCCCcEEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA--GVSHKVKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~--g~~~~v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ++|-=||+|.-.  ..++..+. .+.+|+.+|.+++.++..++.-...  ................+...     -...|
T Consensus         2 k~iaIiGaG~~G--~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----~~~aD   74 (184)
T d1bg6a2           2 KTYAVLGLGNGG--HAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA-----VKDAD   74 (184)
T ss_dssp             CEEEEECCSHHH--HHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH-----HTTCS
T ss_pred             CEEEEECccHHH--HHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH-----hcCCC
Confidence            467778886543  33333322 2569999999998776655432100  00000111111111112222     15689


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +||+-.+.......++.+.+.|+++.++++
T Consensus        75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          75 VILIVVPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             EEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             EEEEEEchhHHHHHHHHhhhccCCCCEEEE
Confidence            999988777788899999999999987765

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=93.10  E-value=0.025  Score=46.75  Aligned_cols=52  Identities=12%  Similarity=0.211  Sum_probs=40.6

Q ss_pred             EEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCcc-------------c----hHHHHHHHHccCCCCcEEEEe
Q 023645          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------M----YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       173 v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~-------------~----~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      -++++||..+.+..+.    ++++|+|+.|++..             +    ....+..+.++|+++|.++++
T Consensus        13 ~~l~~GD~le~l~~l~----~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~   81 (320)
T d1booa_          13 GSMYIGDSLELLESFP----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   81 (320)
T ss_dssp             EEEEESCHHHHGGGSC----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEehhHHHHHhhCc----cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence            4899999998887763    68999999998621             1    234577778999999998874

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.27  Score=39.73  Aligned_cols=105  Identities=21%  Similarity=0.096  Sum_probs=68.2

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC--CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--H----HHHHhCC
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALILNG  191 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l----~~~~~~~  191 (279)
                      +++|.=|--|++.++..+++.+.  .+.+|+.++.+++..+.+.+.++..+.  ++.++.+|..+.  .    ....++ 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~-   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE-   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh-
Confidence            45674443355566776666542  157999999999999888888887664  478899998642  1    222222 


Q ss_pred             CCCcEEEEEEeCCc-------c----c-----------hHHHHHHHHccCCCCcEEEEe
Q 023645          192 EASSYDFAFVDAEK-------R----M-----------YQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       192 ~~~~fDlI~id~~~-------~----~-----------~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                       .+++|+++.++..       .    +           .....+.+.+.|+++|.++.-
T Consensus        79 -~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          79 -YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             -HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             -cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence             3689999987641       0    1           112344456888999987764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.54  E-value=0.27  Score=34.92  Aligned_cols=89  Identities=13%  Similarity=0.002  Sum_probs=58.4

Q ss_pred             CccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccc
Q 023645          128 VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM  207 (279)
Q Consensus       128 ~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~  207 (279)
                      ||.|..+..+++.+. +..++.+|.+++..+..+.    .    .+.++.||+.+. ..+..- .-++.+.+++..+...
T Consensus         6 ~G~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~----~----~~~~i~Gd~~~~-~~L~~a-~i~~A~~vi~~~~~d~   74 (129)
T d2fy8a1           6 CGWSESTLECLRELR-GSEVFVLAEDENVRKKVLR----S----GANFVHGDPTRV-SDLEKA-NVRGARAVIVNLESDS   74 (129)
T ss_dssp             ESCCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHH----T----TCEEEESCTTSH-HHHHHT-TCTTCSEEEECCSSHH
T ss_pred             ECCCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHh----c----CccccccccCCH-HHHHHh-hhhcCcEEEEeccchh
Confidence            567999999999886 5678899999988765432    2    368899998652 222111 1457788887655443


Q ss_pred             hHHHHHHHHccCCCCcEEEE
Q 023645          208 YQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       208 ~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      .....-...+.+.|...++.
T Consensus        75 ~n~~~~~~~r~~~~~~~iia   94 (129)
T d2fy8a1          75 ETIHCILGIRKIDESVRIIA   94 (129)
T ss_dssp             HHHHHHHHHHHHCSSSCEEE
T ss_pred             hhHHHHHHHHHHCCCceEEE
Confidence            33344445567788766665

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.40  E-value=0.56  Score=37.50  Aligned_cols=82  Identities=20%  Similarity=0.115  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--H----HHHHhCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALILNG  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l----~~~~~~~  191 (279)
                      .++.+|-.|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+...+...++..+.+|+.+.  .    ....++ 
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~-   80 (258)
T d1iy8a_           3 TDRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER-   80 (258)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH-
Confidence            5678888887655 455555544 236799999999999888887777666666788899987542  2    222111 


Q ss_pred             CCCcEEEEEEeC
Q 023645          192 EASSYDFAFVDA  203 (279)
Q Consensus       192 ~~~~fDlI~id~  203 (279)
                       -++.|+++.++
T Consensus        81 -~G~iDiLVnnA   91 (258)
T d1iy8a_          81 -FGRIDGFFNNA   91 (258)
T ss_dssp             -HSCCSEEEECC
T ss_pred             -hCCCCEEEECC
Confidence             26799988764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.16  E-value=1.9  Score=34.02  Aligned_cols=82  Identities=18%  Similarity=0.140  Sum_probs=53.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHH-HHhCCCCcEEEEEcChhhH------HHHHHh
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYY-ERAGVSHKVKIKHGLAADS------LKALIL  189 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~-~~~g~~~~v~~~~gd~~~~------l~~~~~  189 (279)
                      .+++++|-.|++.| .+..+++.+. .+++|+.+|.+++.++.+.+.+ +..+  .++.++.+|..+.      .....+
T Consensus         3 l~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           3 LRGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            35778999997654 5666665542 3689999999988876665544 4444  3578888988542      222211


Q ss_pred             CCCCCcEEEEEEeCC
Q 023645          190 NGEASSYDFAFVDAE  204 (279)
Q Consensus       190 ~~~~~~fDlI~id~~  204 (279)
                      +  -+++|+++.++.
T Consensus        80 ~--~g~iDiLVnnAG   92 (251)
T d1vl8a_          80 K--FGKLDTVVNAAG   92 (251)
T ss_dssp             H--HSCCCEEEECCC
T ss_pred             H--cCCCCEEEECCC
Confidence            1  268999987653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.94  E-value=0.5  Score=34.39  Aligned_cols=96  Identities=10%  Similarity=-0.005  Sum_probs=57.9

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDF  198 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~fDl  198 (279)
                      +|+=+  |.|..+..+++.+. .+..++.+|.+++......+....    ..+.++.||+.+.  +...    .-+..|.
T Consensus         5 HiII~--G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a----~i~~a~~   74 (153)
T d1id1a_           5 HFIVC--GHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKA----GIDRCRA   74 (153)
T ss_dssp             CEEEE--CCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHH----TTTTCSE
T ss_pred             EEEEE--CCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHh----ccccCCE
Confidence            45554  55778888777653 246899999998764433333321    2478999998653  3332    1457888


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      |++..+.+......-...+.+.|...++.
T Consensus        75 vi~~~~~d~~n~~~~~~~r~~~~~~~iia  103 (153)
T d1id1a_          75 ILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             EEEccccHHHHHHHHHHHHHhCCCCceEE
Confidence            88765543333333344556677766665

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.81  E-value=1.9  Score=33.96  Aligned_cols=81  Identities=12%  Similarity=0.114  Sum_probs=57.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHhCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILNG  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~~~  191 (279)
                      +.+.+|-.|.+ +..+..+++.+. .+++|+.+|.+++.++.+.+.++..+.  ++.++.+|..+.      .....+. 
T Consensus         9 enKvalITGas-~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~-   84 (251)
T d2c07a1           9 ENKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTE-   84 (251)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHh-
Confidence            56788888865 557777777654 357999999999998888888876553  588899998642      2222222 


Q ss_pred             CCCcEEEEEEeCC
Q 023645          192 EASSYDFAFVDAE  204 (279)
Q Consensus       192 ~~~~fDlI~id~~  204 (279)
                       -+.+|+++.++.
T Consensus        85 -~g~iDilvnnag   96 (251)
T d2c07a1          85 -HKNVDILVNNAG   96 (251)
T ss_dssp             -CSCCCEEEECCC
T ss_pred             -cCCceeeeeccc
Confidence             368998887653

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.32  E-value=2.1  Score=33.80  Aligned_cols=82  Identities=12%  Similarity=0.154  Sum_probs=54.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEE-EeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHh
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVA-CERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALIL  189 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~-iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~  189 (279)
                      ..++.||-.| |++..+..+++.+. .+++|+. ...+++..+.+.+.++..|.  ++.++.+|..+.      .....+
T Consensus         4 L~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           4 LAGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHH
Confidence            4578889777 55666777776653 3567775 45677777888888887664  588899998641      222222


Q ss_pred             CCCCCcEEEEEEeCC
Q 023645          190 NGEASSYDFAFVDAE  204 (279)
Q Consensus       190 ~~~~~~fDlI~id~~  204 (279)
                      +  .+..|.++.++.
T Consensus        81 ~--~g~idilinnag   93 (259)
T d1ja9a_          81 H--FGGLDFVMSNSG   93 (259)
T ss_dssp             H--HSCEEEEECCCC
T ss_pred             H--cCCCcEEEeccc
Confidence            2  367999887643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=88.69  E-value=0.24  Score=35.23  Aligned_cols=92  Identities=12%  Similarity=0.046  Sum_probs=53.8

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhh--HHHHHHhCCCCCcEEE
Q 023645          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASSYDF  198 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~~~~~~~~~~fDl  198 (279)
                      +++=+  |.|..+..+++.+. .+..|+.+|.+++.++.++.    .+    ...+.||+.+  .+...    .-...|.
T Consensus         2 ~~iIi--G~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~~----~~~~~gd~~~~~~l~~a----~i~~a~~   67 (134)
T d2hmva1           2 QFAVI--GLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSL----GIRNFEY   67 (134)
T ss_dssp             CEEEE--CCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----TC----SEEEECCTTCTTHHHHH----TGGGCSE
T ss_pred             EEEEE--CCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----hC----Ccceeeecccchhhhcc----CCccccE
Confidence            34445  45788888877653 25689999999988766532    12    3566788765  33332    1256788


Q ss_pred             EEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       199 I~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +++..+.......+-...+.+.+...++.
T Consensus        68 vi~~~~~~~~~~~~~~~~~~~~~~~~iia   96 (134)
T d2hmva1          68 VIVAIGANIQASTLTTLLLKELDIPNIWV   96 (134)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEcCchHHhHHHHHHHHHHcCCCcEEe
Confidence            88765543333333333333445555554

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.54  E-value=3.8  Score=32.37  Aligned_cols=81  Identities=11%  Similarity=0.094  Sum_probs=52.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCC-hhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHh
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALIL  189 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s-~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~  189 (279)
                      .+++++|-.|+..| ++..+++.+. .+++|+.++.+ ++.++.+.+.++..+.  ++.++.+|..+.      +....+
T Consensus        16 L~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          16 LEGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence            46788998887544 5666665542 35799999887 4566666666766654  488888888641      222211


Q ss_pred             CCCCCcEEEEEEeC
Q 023645          190 NGEASSYDFAFVDA  203 (279)
Q Consensus       190 ~~~~~~fDlI~id~  203 (279)
                      .  .+..|+++...
T Consensus        93 ~--~g~idilV~na  104 (272)
T d1g0oa_          93 I--FGKLDIVCSNS  104 (272)
T ss_dssp             H--HSCCCEEEECC
T ss_pred             H--hCCCCcccccc
Confidence            1  36789887654

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=88.41  E-value=0.62  Score=37.69  Aligned_cols=93  Identities=19%  Similarity=0.253  Sum_probs=60.7

Q ss_pred             ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCc---
Q 023645          129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK---  205 (279)
Q Consensus       129 G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~---  205 (279)
                      +.|+-.+ ++..+.+.-+++.+|++|+-.+..++++.   -..++.+++.|..+.+..+...  .++=-+|++|++.   
T Consensus        90 YPGSP~i-a~~llR~~Drl~l~ELHp~e~~~L~~~~~---~~~~~~v~~~DG~~~l~allPP--~~rRgLVLIDPpYE~k  163 (271)
T d2oo3a1          90 YPGSPYF-AINQLRSQDRLYLCELHPTEYNFLLKLPH---FNKKVYVNHTDGVSKLNALLPP--PEKRGLIFIDPSYERK  163 (271)
T ss_dssp             EECHHHH-HHHHSCTTSEEEEECCSHHHHHHHTTSCC---TTSCEEEECSCHHHHHHHHCSC--TTSCEEEEECCCCCST
T ss_pred             CCCCHHH-HHHhCCCCCceEEeecCHHHHHHHHHHhc---cCCCceEEcCchHHHHHhhCCC--CCCceEEEecCCcCCH
Confidence            4454333 23334446799999999998888777654   2457999999999987776432  2344599999884   


Q ss_pred             cchHHHHHHHHccCC--CCcEEEE
Q 023645          206 RMYQEYFELLLQLIR--VGGIIVI  227 (279)
Q Consensus       206 ~~~~~~l~~~~~~Lk--~gG~lv~  227 (279)
                      .+|....+.+...++  +.|++++
T Consensus       164 ~ey~~v~~~l~~a~kr~~~g~~~i  187 (271)
T d2oo3a1         164 EEYKEIPYAIKNAYSKFSTGLYCV  187 (271)
T ss_dssp             THHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEE
Confidence            345554444444433  5566665

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.38  E-value=0.74  Score=37.06  Aligned_cols=83  Identities=18%  Similarity=0.266  Sum_probs=57.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhH------HHHHHh
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS------LKALIL  189 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~------l~~~~~  189 (279)
                      ..++++|-.|++.| ++..+++.+. .+++|+.+|.+++.++.+.+.+...+.. .++..+.+|..+.      .....+
T Consensus         2 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           2 FSGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            35778888886655 5666665542 3679999999999998888888877653 4689999997542      122211


Q ss_pred             CCCCCcEEEEEEeC
Q 023645          190 NGEASSYDFAFVDA  203 (279)
Q Consensus       190 ~~~~~~fDlI~id~  203 (279)
                      .  -++.|+++.++
T Consensus        81 ~--~G~iDilVnnA   92 (274)
T d1xhla_          81 K--FGKIDILVNNA   92 (274)
T ss_dssp             H--HSCCCEEEECC
T ss_pred             H--cCCceEEEeec
Confidence            1  26789998764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.36  E-value=0.94  Score=35.93  Aligned_cols=83  Identities=12%  Similarity=0.037  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHhCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILNG  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~~~  191 (279)
                      +++.+|-.|++. ..+..+++.+ ..+++|+.+|.+++.++.+.+.+.......++.++.+|..+.      .....+. 
T Consensus         2 ~GKvalITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-   79 (254)
T d2gdza1           2 NGKVALVTGAAQ-GIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH-   79 (254)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH-
Confidence            467888888654 4666666654 346799999999998887777665443345688999998642      1222111 


Q ss_pred             CCCcEEEEEEeCC
Q 023645          192 EASSYDFAFVDAE  204 (279)
Q Consensus       192 ~~~~fDlI~id~~  204 (279)
                       -+++|+++.++.
T Consensus        80 -~G~iDilVnnAg   91 (254)
T d2gdza1          80 -FGRLDILVNNAG   91 (254)
T ss_dssp             -HSCCCEEEECCC
T ss_pred             -cCCcCeeccccc
Confidence             268999887754

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=88.05  E-value=0.3  Score=41.42  Aligned_cols=46  Identities=17%  Similarity=0.074  Sum_probs=35.3

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC------CCCEEEEEeCChhHHHHHHHHHH
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLP------ESGCLVACERDARSLEVAKKYYE  165 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~------~~~~v~~iD~s~~~~~~a~~~~~  165 (279)
                      ..+|+|+|+|.|..+.-+++.+.      ...+++.+|.++...+.-++.+.
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            34899999999999887776543      23579999999987766666554

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.96  E-value=1.3  Score=32.78  Aligned_cols=127  Identities=16%  Similarity=0.076  Sum_probs=69.0

Q ss_pred             EEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645          123 CIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (279)
Q Consensus       123 VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i  201 (279)
                      |==||+  |..+..|++.+- .+.+|++.|.+++..+...+............. ..+..+....+      ...+.++.
T Consensus         4 IGvIGl--G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~   74 (178)
T d1pgja2           4 VGVVGL--GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAASL------KKPRKALI   74 (178)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHHHB------CSSCEEEE
T ss_pred             EEEEee--hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhh-hhhhhHHHHhc------ccceEEEE
Confidence            444555  667777766552 246899999999877665554332222222222 22232233332      23333333


Q ss_pred             e-CCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCc
Q 023645          202 D-AEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDG  272 (279)
Q Consensus       202 d-~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (279)
                      . .........+..+...+++|.+++-.....+.             ..+++.+.+. ...+...-.|+..|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~-------------~~~~~~~~l~-~~~~~~ldapv~g~  132 (178)
T d1pgja2          75 LVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFK-------------DQGRRAQQLE-AAGLRFLGMGISGG  132 (178)
T ss_dssp             CCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHH-------------HHHHHHHHHH-TTTCEEEEEEEESH
T ss_pred             eecCcchhhhhhhhhhhhccccceecccCccchh-------------HHHHHHHHHh-hcceeEecccccCC
Confidence            2 33344456677888889998877654333222             1355666654 55567677777543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.65  E-value=1.6  Score=32.80  Aligned_cols=78  Identities=17%  Similarity=0.205  Sum_probs=50.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChh--hHHHHHHhCCCCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA--DSLKALILNGEAS  194 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~--~~l~~~~~~~~~~  194 (279)
                      ..+++||-.|.+ |..+..+++.+ ..+++|+.++.+++..+.+.+.+.....   +.+...|..  +.+...     -+
T Consensus        21 l~gK~vlItGas-gGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~-----~~   91 (191)
T d1luaa1          21 VKGKKAVVLAGT-GPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFK---VNVTAAETADDASRAEA-----VK   91 (191)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHT---CCCEEEECCSHHHHHHH-----TT
T ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccc---hhhhhhhcccHHHHHHH-----hc
Confidence            478899999854 45566665544 2367999999999988877776665322   233333332  233333     36


Q ss_pred             cEEEEEEeCC
Q 023645          195 SYDFAFVDAE  204 (279)
Q Consensus       195 ~fDlI~id~~  204 (279)
                      ..|++|..+.
T Consensus        92 ~iDilin~Ag  101 (191)
T d1luaa1          92 GAHFVFTAGA  101 (191)
T ss_dssp             TCSEEEECCC
T ss_pred             CcCeeeecCc
Confidence            7899987654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.37  E-value=3.5  Score=30.43  Aligned_cols=92  Identities=15%  Similarity=0.201  Sum_probs=49.3

Q ss_pred             EEEEEcCcc-CHHHHHHHHHCCCCCEEEEE-eCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEE
Q 023645          122 RCIEVGVYT-GYSSLAIALVLPESGCLVAC-ERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (279)
Q Consensus       122 ~VLEiG~G~-G~~t~~la~~~~~~~~v~~i-D~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI  199 (279)
                      +|.=||||. |..-.......+ +.+++++ |.+++..+   +..+..+......+ ..|..+.+.       +...|+|
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~~---~~~~~~~~~~~~~~-~~~~~~ll~-------~~~iD~v   70 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAK---AFATANNYPESTKI-HGSYESLLE-------DPEIDAL   70 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHH---HHHHHTTCCTTCEE-ESSHHHHHH-------CTTCCEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCccccc---cchhccccccceee-cCcHHHhhh-------cccccee
Confidence            677889974 322222333444 6788865 88776543   33344455443443 345555443       4678999


Q ss_pred             EEeCCccchHHHHHHHHccCCCCcEEEEe
Q 023645          200 FVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (279)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~Lk~gG~lv~d  228 (279)
                      ++..+.....+   .+...|+.|=-++++
T Consensus        71 ~I~tp~~~h~~---~~~~~l~~g~~v~~E   96 (184)
T d1ydwa1          71 YVPLPTSLHVE---WAIKAAEKGKHILLE   96 (184)
T ss_dssp             EECCCGGGHHH---HHHHHHTTTCEEEEC
T ss_pred             eecccchhhcc---hhhhhhhccceeecc
Confidence            98765443322   233334444444443

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=87.29  E-value=1.1  Score=35.79  Aligned_cols=81  Identities=21%  Similarity=0.303  Sum_probs=55.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILN  190 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~~  190 (279)
                      ..++.+|-.|.+.| ++..+++.+. .+++|+.+|.+++.++.+.+.++..+.  ++..+.+|+.+.      .....++
T Consensus         3 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           3 FNGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46788998886544 5555555542 367999999999999888888876553  588889987542      2222221


Q ss_pred             CCCCcEEEEEEeC
Q 023645          191 GEASSYDFAFVDA  203 (279)
Q Consensus       191 ~~~~~fDlI~id~  203 (279)
                        -+..|+++.++
T Consensus        80 --~g~iDilVnna   90 (260)
T d1zema1          80 --FGKIDFLFNNA   90 (260)
T ss_dssp             --HSCCCEEEECC
T ss_pred             --hCCCCeehhhh
Confidence              26799988764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=86.98  E-value=1.8  Score=34.29  Aligned_cols=82  Identities=13%  Similarity=0.109  Sum_probs=56.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--H----HHHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALILN  190 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l----~~~~~~  190 (279)
                      .+++++|-.|+. +..+..+++.+ ..+++|+.++.+++.++.+.+.+...+.  .+.++.+|..+.  +    ....+.
T Consensus         4 L~gK~alITGas-~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           4 LKGTTALVTGGS-KGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             CTTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence            357899999975 55566666543 2368999999999988888888877664  478888888642  1    222222


Q ss_pred             CCCCcEEEEEEeC
Q 023645          191 GEASSYDFAFVDA  203 (279)
Q Consensus       191 ~~~~~fDlI~id~  203 (279)
                      . .+..|+++..+
T Consensus        81 ~-~g~idilinna   92 (258)
T d1ae1a_          81 F-DGKLNILVNNA   92 (258)
T ss_dssp             T-TSCCCEEEECC
T ss_pred             h-CCCcEEEeccc
Confidence            1 35788887654

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=86.89  E-value=0.36  Score=36.17  Aligned_cols=98  Identities=14%  Similarity=0.135  Sum_probs=61.3

Q ss_pred             CCCEEEEEcC--ccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcE
Q 023645          119 GAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (279)
Q Consensus       119 ~~~~VLEiG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~f  196 (279)
                      ++.+||--|.  |.|..+..+++.+  +++|+++.-+++..+.+++    .|...   ++  +..+...........+.+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k~~~~~~----lGad~---vi--~~~~~~~~~~~~~~~~gv   91 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGASE---VI--SREDVYDGTLKALSKQQW   91 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTCSE---EE--EHHHHCSSCCCSSCCCCE
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHHHHHHHh----hcccc---eE--eccchhchhhhcccCCCc
Confidence            3456887764  4566777888886  4899999999888766654    45432   12  111111111111124679


Q ss_pred             EEEEEeCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 023645          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (279)
Q Consensus       197 DlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~dd~~  231 (279)
                      |+|+-...-    ..++...+.|+++|.++.-...
T Consensus        92 d~vid~vgg----~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          92 QGAVDPVGG----KQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             EEEEESCCT----HHHHHHHTTEEEEEEEEECCCS
T ss_pred             eEEEecCcH----HHHHHHHHHhccCceEEEeecc
Confidence            988755432    3577899999999999985443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.70  E-value=3.1  Score=32.60  Aligned_cols=82  Identities=13%  Similarity=0.071  Sum_probs=56.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHH----HHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKA----LILN  190 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~----~~~~  190 (279)
                      ..++.+|-.|++.| .+..++..+ ..+.+|+.+|.+++.++...+.++..+  .++.++.+|..+.  ...    ..++
T Consensus         5 l~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           5 VTGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            35778888887765 455555544 236799999999999988888887655  3588899998652  121    1122


Q ss_pred             CCCCcEEEEEEeCC
Q 023645          191 GEASSYDFAFVDAE  204 (279)
Q Consensus       191 ~~~~~fDlI~id~~  204 (279)
                        .+..|+++.++.
T Consensus        82 --~g~idilinnag   93 (244)
T d1yb1a_          82 --IGDVSILVNNAG   93 (244)
T ss_dssp             --TCCCSEEEECCC
T ss_pred             --cCCCceeEeecc
Confidence              467999887654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.61  E-value=2.4  Score=33.27  Aligned_cols=81  Identities=16%  Similarity=0.142  Sum_probs=50.5

Q ss_pred             cCCCEEEEEcCccC-HHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHh
Q 023645          118 LGAQRCIEVGVYTG-YSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALIL  189 (279)
Q Consensus       118 ~~~~~VLEiG~G~G-~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~  189 (279)
                      .+++++|-.|++.+ .++..+++.+ ..+++|+..+.+++..+.+++.....+   +..++.+|..+.      .....+
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~   82 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGVKE   82 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC---cccccccccCCHHHHHHHHHHHHH
Confidence            46789999996542 2444444443 236799999999887777776665544   356777887542      222211


Q ss_pred             CCCCCcEEEEEEeC
Q 023645          190 NGEASSYDFAFVDA  203 (279)
Q Consensus       190 ~~~~~~fDlI~id~  203 (279)
                      .  -++.|+++.++
T Consensus        83 ~--~g~iDilVnna   94 (256)
T d1ulua_          83 A--FGGLDYLVHAI   94 (256)
T ss_dssp             H--HSSEEEEEECC
T ss_pred             h--cCCceEEEecc
Confidence            1  26899887654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.22  E-value=1  Score=36.05  Aligned_cols=83  Identities=16%  Similarity=0.196  Sum_probs=57.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhH------HHHHHh
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS------LKALIL  189 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~------l~~~~~  189 (279)
                      .+++++|-.|++ +.++..+++.+. .+++|+.+|.+++.++.+.+.++..+.. .++.++.+|..+.      .....+
T Consensus         3 L~gK~alVTGas-~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSS-NGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            457788888865 456666666542 3679999999999999888888876643 4688999987541      222221


Q ss_pred             CCCCCcEEEEEEeC
Q 023645          190 NGEASSYDFAFVDA  203 (279)
Q Consensus       190 ~~~~~~fDlI~id~  203 (279)
                      +  -+..|+++.++
T Consensus        82 ~--~g~iDilvnnA   93 (272)
T d1xkqa_          82 Q--FGKIDVLVNNA   93 (272)
T ss_dssp             H--HSCCCEEEECC
T ss_pred             H--hCCceEEEeCC
Confidence            1  26799988764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=86.19  E-value=1.9  Score=33.82  Aligned_cols=77  Identities=14%  Similarity=0.084  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHhCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILNG  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~~~  191 (279)
                      +++.+|-.|.+. ..+..+++.+. .+++|+.+|.+++.++...+.+.     .+...+.+|..+.      .....+. 
T Consensus         3 ~gK~alITGas~-GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~-   75 (243)
T d1q7ba_           3 EGKIALVTGASR-GIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE-   75 (243)
T ss_dssp             TTCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc-
Confidence            567888888654 45666666542 36799999999988776665543     3577788887542      2222222 


Q ss_pred             CCCcEEEEEEeC
Q 023645          192 EASSYDFAFVDA  203 (279)
Q Consensus       192 ~~~~fDlI~id~  203 (279)
                       -++.|+++.++
T Consensus        76 -~g~iDilVnnA   86 (243)
T d1q7ba_          76 -FGEVDILVNNA   86 (243)
T ss_dssp             -TCSCSEEEECC
T ss_pred             -cCCcceehhhh
Confidence             36899988765

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.03  E-value=1.6  Score=34.61  Aligned_cols=82  Identities=15%  Similarity=0.087  Sum_probs=56.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HH----HHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK----ALILN  190 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~----~~~~~  190 (279)
                      .+++++|-.|.+ +..+..+++.+ ..+++|+.++.+++.++.+.+.++..+-  ++.++.+|..+.  ..    ...+.
T Consensus         9 L~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_           9 LDGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             CTTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            357788877755 55666666665 3467999999999998888888877653  588889998642  11    12111


Q ss_pred             CCCCcEEEEEEeCC
Q 023645          191 GEASSYDFAFVDAE  204 (279)
Q Consensus       191 ~~~~~fDlI~id~~  204 (279)
                        -++.|+++.++.
T Consensus        86 --~g~iDilvnnAG   97 (255)
T d1fmca_          86 --LGKVDILVNNAG   97 (255)
T ss_dssp             --HSSCCEEEECCC
T ss_pred             --cCCCCEeeeCCc
Confidence              267998887643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=85.45  E-value=2  Score=33.99  Aligned_cols=83  Identities=13%  Similarity=0.116  Sum_probs=56.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--H----HHHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALILN  190 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l----~~~~~~  190 (279)
                      .+++++|-.|.+. ..+..+++.+. .+++|+.+|.+++.++.+.+.+...+  .++.++.+|..+.  .    ....++
T Consensus         6 L~GK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d2ae2a_           6 LEGCTALVTGGSR-GIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH   82 (259)
T ss_dssp             CTTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence            3578899888664 45666665542 36799999999999888888777655  3578888988541  2    222222


Q ss_pred             CCCCcEEEEEEeCC
Q 023645          191 GEASSYDFAFVDAE  204 (279)
Q Consensus       191 ~~~~~fDlI~id~~  204 (279)
                      . .++.|+++.++.
T Consensus        83 ~-~~~idilvnnAG   95 (259)
T d2ae2a_          83 F-HGKLNILVNNAG   95 (259)
T ss_dssp             T-TTCCCEEEECCC
T ss_pred             h-CCCceEEEECCc
Confidence            1 247999987653

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.32  E-value=1.4  Score=35.08  Aligned_cols=83  Identities=20%  Similarity=0.178  Sum_probs=57.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCC-CcEEEEEcChhhH------HHHHHh
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS------LKALIL  189 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~------l~~~~~  189 (279)
                      ..++.+|-.|++ +.++..+++.+ ..+++|+.+|.+++.++.+.+.+...+.. .++.++.+|..+.      .....+
T Consensus         3 l~gKvalVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            356778887865 45666666655 34689999999999998888888776543 4689999998531      222221


Q ss_pred             CCCCCcEEEEEEeC
Q 023645          190 NGEASSYDFAFVDA  203 (279)
Q Consensus       190 ~~~~~~fDlI~id~  203 (279)
                      .  -++.|+++.++
T Consensus        82 ~--~g~iDilvnnA   93 (264)
T d1spxa_          82 K--FGKLDILVNNA   93 (264)
T ss_dssp             H--HSCCCEEEECC
T ss_pred             H--hCCCCEeeccc
Confidence            1  26789888654

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.12  E-value=7.3  Score=31.91  Aligned_cols=118  Identities=12%  Similarity=0.113  Sum_probs=65.6

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHHHHHHHh-------C-------------CC
Q 023645          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-------G-------------VS  170 (279)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-------g-------------~~  170 (279)
                      +...+...+...|+-+|||.=.....+....+ +.+++=+|. |+.++.=++.+++.       +             ..
T Consensus        88 v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s  165 (328)
T d1rjda_          88 ILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQ  165 (328)
T ss_dssp             HHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEEC
T ss_pred             HHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCC
Confidence            33334445566899999988877777766554 445555555 34443333333321       0             12


Q ss_pred             CcEEEEEcChhhH--HHHHHhCC-CCCcEEEEEEeCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 023645          171 HKVKIKHGLAADS--LKALILNG-EASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  230 (279)
Q Consensus       171 ~~v~~~~gd~~~~--l~~~~~~~-~~~~fDlI~id~~-----~~~~~~~l~~~~~~Lk~gG~lv~dd~  230 (279)
                      ++..++.+|..+.  +..+...+ +.+..-+++.-+.     .+.....++.+......+..++.+-+
T Consensus       166 ~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~~~~i~YE~i  233 (328)
T d1rjda_         166 GRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWISYDPI  233 (328)
T ss_dssp             SSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEEEC
T ss_pred             CCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCCceEEEeccC
Confidence            4578888888652  33443333 2233345555443     44566777877777766655555433

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=84.87  E-value=2.5  Score=33.31  Aligned_cols=80  Identities=20%  Similarity=0.195  Sum_probs=54.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--H----HHHHhCCC
Q 023645          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALILNGE  192 (279)
Q Consensus       120 ~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l----~~~~~~~~  192 (279)
                      ++.+|--|++ +..+..+++.+. .+++|+.+|.+++.++.+.+.++..+.  ++.++.+|..+.  .    ....+.  
T Consensus         2 gKValITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~--   76 (257)
T d2rhca1           2 SEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVER--   76 (257)
T ss_dssp             CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH--
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHH--
Confidence            4566777755 455666666553 367999999999999888888877654  588899998542  2    222222  


Q ss_pred             CCcEEEEEEeCC
Q 023645          193 ASSYDFAFVDAE  204 (279)
Q Consensus       193 ~~~fDlI~id~~  204 (279)
                      -++.|+++.++.
T Consensus        77 ~g~iDilVnnAG   88 (257)
T d2rhca1          77 YGPVDVLVNNAG   88 (257)
T ss_dssp             TCSCSEEEECCC
T ss_pred             hCCCCEEEeccc
Confidence            368999887653

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=84.70  E-value=0.84  Score=37.50  Aligned_cols=78  Identities=15%  Similarity=0.172  Sum_probs=46.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYD  197 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~fD  197 (279)
                      ++||-+| |+|+.+..+++.+ ..+.+|+++|.............+... ..+++++++|..+.  +.....   ..++|
T Consensus         1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~---~~~~d   75 (338)
T d1udca_           1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILH---DHAID   75 (338)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHH---HTTCS
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHh---ccCCC
Confidence            4688888 7899999988775 235689999852211111111111111 13589999998653  222221   34689


Q ss_pred             EEEEeC
Q 023645          198 FAFVDA  203 (279)
Q Consensus       198 lI~id~  203 (279)
                      .||.-+
T Consensus        76 ~ViHlA   81 (338)
T d1udca_          76 TVIHFA   81 (338)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            998654

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=84.60  E-value=3.8  Score=28.02  Aligned_cols=77  Identities=13%  Similarity=0.085  Sum_probs=52.1

Q ss_pred             CEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEEeCCccc--hHHHHHHHHccCCCC
Q 023645          145 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIRVG  222 (279)
Q Consensus       145 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~id~~~~~--~~~~l~~~~~~Lk~g  222 (279)
                      .+|.-+|=++...+..+..++..|+.  +.....+..+.+..+.    ...||+|++|.....  -.+.++.+.+. .|.
T Consensus         2 krILivDD~~~~~~~l~~~L~~~g~~--v~~~a~~~~~al~~~~----~~~~dliilD~~mp~~~G~e~~~~ir~~-~~~   74 (118)
T d1u0sy_           2 KRVLIVDDAAFMRMMLKDIITKAGYE--VAGEATNGREAVEKYK----ELKPDIVTMDITMPEMNGIDAIKEIMKI-DPN   74 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHH----HHCCSEEEEECSCGGGCHHHHHHHHHHH-CTT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCc--eEEEECCHHHHHHHHH----hccCCEEEEecCCCCCCHHHHHHHHHHh-CCC
Confidence            48899999999999999999987763  4444567777666553    357999999976332  33555555433 343


Q ss_pred             -cEEEEe
Q 023645          223 -GIIVID  228 (279)
Q Consensus       223 -G~lv~d  228 (279)
                       -++++.
T Consensus        75 ~pvi~ls   81 (118)
T d1u0sy_          75 AKIIVCS   81 (118)
T ss_dssp             CCEEEEE
T ss_pred             CcEEEEE
Confidence             355553

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=84.55  E-value=1.4  Score=31.76  Aligned_cols=36  Identities=17%  Similarity=0.110  Sum_probs=27.4

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-CCEEEEEeCChhHH
Q 023645          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSL  157 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~  157 (279)
                      ++|.=|| |.|..+..|++.+.. +..|+++|.++...
T Consensus        10 ~kI~iIG-g~G~mG~~la~~L~~~G~~V~~~d~~~~~~   46 (152)
T d2pv7a2          10 HKIVIVG-GYGKLGGLFARYLRASGYPISILDREDWAV   46 (152)
T ss_dssp             CCEEEET-TTSHHHHHHHHHHHTTTCCEEEECTTCGGG
T ss_pred             CeEEEEc-CCCHHHHHHHHHHHHcCCCcEecccccccc
Confidence            4788898 568888888887643 46899999987543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=83.70  E-value=3.1  Score=32.68  Aligned_cols=79  Identities=10%  Similarity=0.053  Sum_probs=50.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--H----HHHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALILN  190 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l----~~~~~~  190 (279)
                      .+++.+|-.|.+ +..+..+++.+. .+++|+.+|.+++.++.+.+.+   +  .+..++.+|..+.  .    ....++
T Consensus         4 L~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           4 LQGKVALVTGGA-SGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHH
Confidence            457788888855 446666666542 3679999999998776655443   2  3577888887541  1    222111


Q ss_pred             CCCCcEEEEEEeCC
Q 023645          191 GEASSYDFAFVDAE  204 (279)
Q Consensus       191 ~~~~~fDlI~id~~  204 (279)
                        -+..|+++.++.
T Consensus        78 --~g~iDilVnnAG   89 (253)
T d1hxha_          78 --LGTLNVLVNNAG   89 (253)
T ss_dssp             --HCSCCEEEECCC
T ss_pred             --hCCCCeEEeccc
Confidence              267899987653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.31  E-value=2  Score=34.05  Aligned_cols=82  Identities=15%  Similarity=0.131  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHhCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILNG  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~~~  191 (279)
                      +++++|-.|++.| ++..+++.+ ..+++|+.++.+++.++.+.+.++..+.  ++..+.+|..+.      .....+..
T Consensus         7 kgK~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            5788898886654 566665554 2367999999999988888777776553  588888888531      12221111


Q ss_pred             CCCcEEEEEEeCC
Q 023645          192 EASSYDFAFVDAE  204 (279)
Q Consensus       192 ~~~~fDlI~id~~  204 (279)
                       .+..|+++.++.
T Consensus        84 -~g~idilvnnAG   95 (259)
T d1xq1a_          84 -GGKLDILINNLG   95 (259)
T ss_dssp             -TTCCSEEEEECC
T ss_pred             -CCCccccccccc
Confidence             367999987653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=83.11  E-value=3.5  Score=30.29  Aligned_cols=124  Identities=10%  Similarity=0.092  Sum_probs=67.2

Q ss_pred             EEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhHHHHHHhCCCCCcEEEEEE
Q 023645          123 CIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (279)
Q Consensus       123 VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~~~~~~~~~~fDlI~i  201 (279)
                      |==||+  |..+..|+..+- .+.+|++.|.+++..+...+.    +.......- ....+.+...     -...|.+++
T Consensus         5 Ig~IGl--G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~----~~~~~~~~~-a~~~~~~~~~-----~~~~~~ii~   72 (176)
T d2pgda2           5 IALIGL--AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN----EAKGTKVLG-AHSLEEMVSK-----LKKPRRIIL   72 (176)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT----TTTTSSCEE-CSSHHHHHHH-----BCSSCEEEE
T ss_pred             EEEEeE--hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh----ccccccccc-hhhhhhhhhh-----hcccceEEE
Confidence            444666  666666666553 246899999999877654432    211111111 2222333232     245567665


Q ss_pred             eCC-ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCcccCChhhHHHHHHHHHhhhCCCeEEEEeecCCc
Q 023645          202 DAE-KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDG  272 (279)
Q Consensus       202 d~~-~~~~~~~l~~~~~~Lk~gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (279)
                      ... .......++.+...+++|.+++-.....+.             ..+++.+.+.. .++...-.|+..|
T Consensus        73 ~~~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~-------------~~~~~~~~~~~-~g~~~ldapvsGg  130 (176)
T d2pgda2          73 LVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYR-------------DTMRRCRDLKD-KGILFVGSGVSGG  130 (176)
T ss_dssp             CSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHH-------------HHHHHHHHHHH-TTCEEEEEEEESH
T ss_pred             ecCchHHHHHHHHHHHhccccCcEEEecCcchhH-------------HHHHHHHHHHh-cCCceeccccccC
Confidence            543 455666778888899988765543222111             12444444433 4666666776443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=82.98  E-value=3.1  Score=32.67  Aligned_cols=76  Identities=14%  Similarity=0.095  Sum_probs=52.5

Q ss_pred             EEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHhCCCCCc
Q 023645          123 CIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILNGEASS  195 (279)
Q Consensus       123 VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~~~~~~~  195 (279)
                      +|-.|++ +..+..+++.+. .+++|+.+|.+++.++.+.+.++..+-  ++.++.+|..+.      .....+.  -++
T Consensus         4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~--~g~   78 (255)
T d1gega_           4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKT--LGG   78 (255)
T ss_dssp             EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH--TTC
T ss_pred             EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHH--hCC
Confidence            4666755 556666666542 367999999999999888888877653  588889998642      2222222  368


Q ss_pred             EEEEEEeC
Q 023645          196 YDFAFVDA  203 (279)
Q Consensus       196 fDlI~id~  203 (279)
                      .|+++.++
T Consensus        79 iDilVnnA   86 (255)
T d1gega_          79 FDVIVNNA   86 (255)
T ss_dssp             CCEEEECC
T ss_pred             ccEEEecc
Confidence            99998765

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=82.35  E-value=1.6  Score=34.71  Aligned_cols=80  Identities=13%  Similarity=0.087  Sum_probs=53.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HH----HHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK----ALILN  190 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~----~~~~~  190 (279)
                      .+++.+|-.|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+.   -..++.++.+|+.+.  ..    ...++
T Consensus         4 L~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           4 LQDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIG---SPDVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---CCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            46788999996655 566666654 336799999999987776665554   334588888988542  22    22121


Q ss_pred             CCCCcEEEEEEeC
Q 023645          191 GEASSYDFAFVDA  203 (279)
Q Consensus       191 ~~~~~fDlI~id~  203 (279)
                        .+.+|.++.++
T Consensus        80 --~g~iD~lVnnA   90 (268)
T d2bgka1          80 --HGKLDIMFGNV   90 (268)
T ss_dssp             --HSCCCEEEECC
T ss_pred             --cCCcceecccc
Confidence              26899998764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.76  E-value=3  Score=32.61  Aligned_cols=75  Identities=19%  Similarity=0.142  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HH----HHHhCC
Q 023645          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK----ALILNG  191 (279)
Q Consensus       119 ~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~----~~~~~~  191 (279)
                      +++++|-.|++.| .+..+++.+. .+++|+.+|.+++.++.+.+.+       ++.++.+|..+.  ..    ...++ 
T Consensus         4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~-   74 (242)
T d1ulsa_           4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAH-   74 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHHh-
Confidence            5678898887655 6666666552 3679999999988766554422       256778887541  22    22221 


Q ss_pred             CCCcEEEEEEeC
Q 023645          192 EASSYDFAFVDA  203 (279)
Q Consensus       192 ~~~~fDlI~id~  203 (279)
                       -+++|+++.++
T Consensus        75 -~g~iDilVnnA   85 (242)
T d1ulsa_          75 -LGRLDGVVHYA   85 (242)
T ss_dssp             -HSSCCEEEECC
T ss_pred             -cCCceEEEECC
Confidence             26799888764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.31  E-value=0.54  Score=35.41  Aligned_cols=34  Identities=9%  Similarity=0.146  Sum_probs=27.4

Q ss_pred             CcEEEEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       194 ~~fDlI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      ...|+|++..+.....+.++++.+.++++-++++
T Consensus        70 ~~ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          70 ENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hccchhhcccchhhhHHHHHhhccccccceeccc
Confidence            5679999988888888999999999987654443

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=81.08  E-value=2.8  Score=33.62  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=46.6

Q ss_pred             EEEEEcCccCHHHHHHHHHC-CCCCEEEEEe-CChhHHHHHHHHHHHhCCCCcEEEEEcChhhH--HHHHHhCCCCCcEE
Q 023645          122 RCIEVGVYTGYSSLAIALVL-PESGCLVACE-RDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYD  197 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD-~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~~~~~~~~~~fD  197 (279)
                      +||-.| |+|+.+..+.+.+ ..+.+|+++| ++..........+.   ...+++++.+|..+.  +.....   ..++|
T Consensus         2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~---~~~~~~~i~~Di~~~~~l~~~~~---~~~~d   74 (338)
T d1orra_           2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS---SLGNFEFVHGDIRNKNDVTRLIT---KYMPD   74 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHH---HHCCS
T ss_pred             EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh---ccCCcEEEEcccCCHHHHHHHHH---hcCCc
Confidence            688776 7899998887765 3467999998 33322211112222   234689999998652  333321   24689


Q ss_pred             EEEEeCC
Q 023645          198 FAFVDAE  204 (279)
Q Consensus       198 lI~id~~  204 (279)
                      .||.-+.
T Consensus        75 ~Vih~aa   81 (338)
T d1orra_          75 SCFHLAG   81 (338)
T ss_dssp             EEEECCC
T ss_pred             eEEeecc
Confidence            9986553

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.95  E-value=9.1  Score=28.59  Aligned_cols=102  Identities=9%  Similarity=0.128  Sum_probs=54.1

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHH------------HHHHhCCCCcEEEEEcChhhHHHHHH
Q 023645          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKALI  188 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~------------~~~~~g~~~~v~~~~gd~~~~l~~~~  188 (279)
                      +|--||+|  +.++.+|..+. .+.+|+++|.+++.++..++            .+.......+..+ ..|..+.+    
T Consensus         2 kI~ViGlG--~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~-~~~~~~~i----   74 (202)
T d1mv8a2           2 RISIFGLG--YVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKAV----   74 (202)
T ss_dssp             EEEEECCS--TTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH----
T ss_pred             EEEEECCC--HhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhccccccc-CCCHHHHH----
Confidence            56667775  44444443332 24699999999987765432            1111111111222 22222222    


Q ss_pred             hCCCCCcEEEEEEeCCc----------cchHHHHHHH---HccCCCCcEEEEeCCCCCCc
Q 023645          189 LNGEASSYDFAFVDAEK----------RMYQEYFELL---LQLIRVGGIIVIDNVLWHGK  235 (279)
Q Consensus       189 ~~~~~~~fDlI~id~~~----------~~~~~~l~~~---~~~Lk~gG~lv~dd~~~~g~  235 (279)
                           ...|++|+..+.          .......+.+   .+.++++..+++.....+|.
T Consensus        75 -----~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGt  129 (202)
T d1mv8a2          75 -----LDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (202)
T ss_dssp             -----HTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             -----hhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcc
Confidence                 235777765431          1123333333   45566888999988888886

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=80.81  E-value=6.4  Score=30.42  Aligned_cols=81  Identities=15%  Similarity=0.106  Sum_probs=48.1

Q ss_pred             cCCCEEEEEcCccC-HHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHh
Q 023645          118 LGAQRCIEVGVYTG-YSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALIL  189 (279)
Q Consensus       118 ~~~~~VLEiG~G~G-~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~  189 (279)
                      ..+++||-.|++.| ..+..+++.+ ..+++|+..+.+++..+.+++.....+.   ......|..+.      ......
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEECCTTCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCC---cceeecccchHHHHHHHHHHhhh
Confidence            46789999887652 2333333332 2367999999998888888777665543   34444444331      111111


Q ss_pred             CCCCCcEEEEEEeC
Q 023645          190 NGEASSYDFAFVDA  203 (279)
Q Consensus       190 ~~~~~~fDlI~id~  203 (279)
                        ..+..|.++..+
T Consensus        80 --~~~~~d~~v~~a   91 (258)
T d1qsga_          80 --VWPKFDGFVHSI   91 (258)
T ss_dssp             --TCSSEEEEEECC
T ss_pred             --cccccceEEEee
Confidence              247888887654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.70  E-value=3.7  Score=33.18  Aligned_cols=86  Identities=19%  Similarity=0.126  Sum_probs=55.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCCEEEEEeCChhHHHHHHHHHHHhC---CCCcEEEEEcChhhH--HHHHHhCC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADS--LKALILNG  191 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~--l~~~~~~~  191 (279)
                      .+++.+|-.|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+....   ...++..+.+|+.+.  ...+.++-
T Consensus        10 L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            56789998886655 566666554 236799999999988877766665431   234688899988642  22211110


Q ss_pred             --CCCcEEEEEEeCC
Q 023645          192 --EASSYDFAFVDAE  204 (279)
Q Consensus       192 --~~~~fDlI~id~~  204 (279)
                        ..+..|+++.++.
T Consensus        89 ~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          89 LDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCeEEEEeecc
Confidence              0267999887653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=80.65  E-value=3.9  Score=32.00  Aligned_cols=75  Identities=17%  Similarity=0.150  Sum_probs=47.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCcEEEEEcChhhH------HHHHHhC
Q 023645          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILN  190 (279)
Q Consensus       118 ~~~~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~~~~~  190 (279)
                      ..++++|-.|.+ +..+..+++.+. .+++|+.+|.+++..+.+++    .+    ..++.+|..+.      .....+.
T Consensus         3 l~GK~alITGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~----~~----~~~~~~Dv~~~~~v~~~~~~~~~~   73 (248)
T d2d1ya1           3 FAGKGVLVTGGA-RGIGRAIAQAFAREGALVALCDLRPEGKEVAEA----IG----GAFFQVDLEDERERVRFVEEAAYA   73 (248)
T ss_dssp             TTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH----HT----CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----CeEEEEeCCCHHHHHHHHHHHHHh
Confidence            467889988855 456666666552 36899999999887655433    22    35677887542      2222221


Q ss_pred             CCCCcEEEEEEeC
Q 023645          191 GEASSYDFAFVDA  203 (279)
Q Consensus       191 ~~~~~fDlI~id~  203 (279)
                        -++.|+++.++
T Consensus        74 --~G~iDiLVnnA   84 (248)
T d2d1ya1          74 --LGRVDVLVNNA   84 (248)
T ss_dssp             --HSCCCEEEECC
T ss_pred             --cCCCCeEEEeC
Confidence              26899988764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.60  E-value=1.1  Score=33.76  Aligned_cols=38  Identities=13%  Similarity=0.286  Sum_probs=29.1

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCCEEEEEeCChhHHHHHH
Q 023645          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAK  161 (279)
Q Consensus       122 ~VLEiG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~  161 (279)
                      +|--||  .|+.++.+|..+..+.+|+|+|++++.++..+
T Consensus         2 kI~ViG--lG~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAG--SGYVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEEC--CSHHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEEC--CChhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            566676  47888777766666789999999999876654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=80.21  E-value=0.38  Score=35.20  Aligned_cols=92  Identities=9%  Similarity=-0.016  Sum_probs=54.7

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCCEEEEEeCChhHHHHHHHHHHHhCCCCc--EEEEEcChhhHHHHHHhCCCCCcEE
Q 023645          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHK--VKIKHGLAADSLKALILNGEASSYD  197 (279)
Q Consensus       121 ~~VLEiG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~--v~~~~gd~~~~l~~~~~~~~~~~fD  197 (279)
                      ++|+=||+|.  .+..++..+. .+..|+.++.+++..+..    ...+....  ......+..   ..      ...+|
T Consensus         1 MkI~IiGaG~--iG~~~a~~L~~~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~------~~~~D   65 (167)
T d1ks9a2           1 MKITVLGCGA--LGQLWLTALCKQGHEVQGWLRVPQPYCSV----NLVETDGSIFNESLTANDP---DF------LATSD   65 (167)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHTTCEEEEECSSCCSEEEE----EEECTTSCEEEEEEEESCH---HH------HHTCS
T ss_pred             CEEEEECcCH--HHHHHHHHHHHCCCceEEEEcCHHHhhhh----ccccCCccccccccccchh---hh------hcccc
Confidence            4788898854  3333333321 146899999887533211    11111111  112222222   22      25789


Q ss_pred             EEEEeCCccchHHHHHHHHccCCCCcEEEE
Q 023645          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (279)
Q Consensus       198 lI~id~~~~~~~~~l~~~~~~Lk~gG~lv~  227 (279)
                      +||+-....+....++.+.+.+.++..++.
T Consensus        66 ~iii~vka~~~~~~~~~l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          66 LLLVTLKAWQVSDAVKSLASTLPVTTPILL   95 (167)
T ss_dssp             EEEECSCGGGHHHHHHHHHTTSCTTSCEEE
T ss_pred             eEEEeecccchHHHHHhhccccCcccEEee
Confidence            999988878888899999999999876654