Citrus Sinensis ID: 023664

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
MGNANGREEGGGGGGGVAGAGANDEIQINGGDHSMSNISPPATPHRSRSPLLFAPQVRIRVPVAPLQRADDPPLFNQMRQHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSVAEFEAPASPESSYSQALPSEEDYAKEPLTVPSQLHLTLLGTENSDEASSSKPKHVVLNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKPHKR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccEEEEEcccccEEEEEEEccccccccEEEEccccEEEEEEcccEEEEEEEEEccEEEEcccccEEEcccccEEccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcEEEEEcccccccEEEEEEEEEEcccEEEEEEEEcccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEEccccccccccccccccEEEEEEcccccEEEEEEEcccEEEccccccEEcccccEEEEEEEccccccHHHHHccccccccccccccccccccHHHcccccccccHHHHHHEcccccccccccccccEEEEEHEEccccccccEEEEEEEEHHccEEEEEEEEccccc
mgnangreegggggggvagagandeiqinggdhsmsnisppatphrsrspllfapqvrirvpvaplqraddpplfnqmrqheshaaasnplekgvptiitwnyggnevavegswdnwtsrrilhrsgkdhsillvlpsgvyhykfivdgdwryipdlpfvadELGGVcnlldvhscvpeildsvaefeapaspessysqalpseedyakepltvpsqLHLTLLgtensdeassskpkhvvLNHVfvddgwksKSVVALGLTHRFQSKYVTVVLYKPHKR
mgnangreeggggggGVAGAGANDEIQINGGDHSMSNISPPATPHRSRSPLLFAPQVRIRVPVAPLQRADDPPLFNQMRQHEShaaasnplekgVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSVAEFEAPASPESSYSQALPSEEDYAKEPLTVPSQLHLTLLGTENSdeassskpkHVVLNHVFVDDGWKSKSVVALGlthrfqskyvtvvlykphkr
MgnangreegggggggvagaganDEIQINGGDHSMSNISPPATPHRSRSPLLFAPQVRIRVPVAPLQRADDPPLFNQMRQHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSVAEFEAPASPESSYSQALPSEEDYAKEPLTVPSQLHLTLLGTENSDEASSSKPKHVVLNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKPHKR
****************************************************FAPQVRIRV********************************GVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSVA****************************************************HVVLNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLY*****
**********************************************************************************************VPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILD*****************************LTVPSQLHLTLLG*******SSSKPKHVVLNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKPHK*
***************GVAGAGANDEIQINGGDHSMSNI*********RSPLLFAPQVRIRVPVAPLQRADDPPLFNQMRQHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSVAEF*****************EDYAKEPLTVPSQLHLTLLGT**********PKHVVLNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKPHKR
***********************************************************RVP*****************************EKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSVAEF*******SSYSQALPSEEDYAKEPLTVPSQLHLTLLGTENSDEASSSKPKHVVLNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKPH**
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MGNANGREEGGGGGGGVAGAGANDEIQINGGDHSMSNISPPATPHRSRSPLLFAPQVRIRVPVAPLQRADDPPLFNQMRQHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEILDSVAEFEAPASPESSYSQALPSEEDYAKEPLTVPSQLHLTLLGTENSDEASSSKPKHVVLNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKPHKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query279 2.2.26 [Sep-21-2011]
Q84VQ1283 SNF1-related protein kina yes no 0.974 0.961 0.610 2e-88
Q9SCY5289 SNF1-related protein kina no no 0.967 0.934 0.479 4e-65
O43741272 5'-AMP-activated protein yes no 0.666 0.683 0.369 3e-26
Q9QZH4271 5'-AMP-activated protein yes no 0.666 0.686 0.364 4e-26
Q6PAM0271 5'-AMP-activated protein yes no 0.666 0.686 0.364 7e-26
Q9R078270 5'-AMP-activated protein no no 0.681 0.703 0.347 8e-24
P80386270 5'-AMP-activated protein no no 0.681 0.703 0.342 2e-23
Q5BIS9270 5'-AMP-activated protein no no 0.627 0.648 0.355 6e-23
Q5R801270 5'-AMP-activated protein yes no 0.627 0.648 0.355 1e-22
Q9Y478270 5'-AMP-activated protein no no 0.627 0.648 0.350 1e-22
>sp|Q84VQ1|KINB1_ARATH SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1 Back     alignment and function desciption
 Score =  325 bits (834), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/290 (61%), Positives = 214/290 (73%), Gaps = 18/290 (6%)

Query: 1   MGNANGREEGGGGGGGVAGAGANDEIQINGGDHSMSN-----------ISPPATPHRSRS 49
           MGNANG++E    G G A   ++   + NGGD S  +            SPP +P RS S
Sbjct: 1   MGNANGKDEDAAAGSGGADVTSSSA-RSNGGDPSARSRHRRPSSDSMSSSPPGSPARSPS 59

Query: 50  PLLFAPQVRIRVPVAPLQRADDPPLFNQMRQHESHAAASNPLEKGVPTIITWNYGGNEVA 109
           P LFAPQV    PVAPLQRA+ PP  N ++ ++S     NP E+G+PTIITWN GGN+VA
Sbjct: 60  PFLFAPQV----PVAPLQRANAPPP-NNIQWNQSQRVFDNPPEQGIPTIITWNQGGNDVA 114

Query: 110 VEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCN 169
           VEGSWDNW SR+ L +SGKDHSIL VLPSG+YHYK IVDG+ +YIPDLPFVADE+G VCN
Sbjct: 115 VEGSWDNWRSRKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCN 174

Query: 170 LLDVHSCVPEILDSVAEFEAPASPESSYSQALPSEEDYAKEPLTVPSQLHLTLLGTENSD 229
           +LDVH+ VPE  +S+ EFEAP SP+ SY Q LP+ EDYAKEPL VP QLHLTLLGT   +
Sbjct: 175 ILDVHNFVPENPESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLGT-TEE 233

Query: 230 EASSSKPKHVVLNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKPHKR 279
            A ++KP+HVVLNHVF++ GW  +S+VALGLTHRF+SKY+TVVLYKP  R
Sbjct: 234 TAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283
Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1 Back     alignment and function description
>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1 Back     alignment and function description
>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1 Back     alignment and function description
>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV=1 Back     alignment and function description
>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2 Back     alignment and function description
>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4 Back     alignment and function description
>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3 Back     alignment and function description
>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3 Back     alignment and function description
>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
225435969286 PREDICTED: SNF1-related protein kinase r 0.978 0.954 0.650 1e-102
66710734279 SNF1-related protein kinase regulatory b 0.978 0.978 0.652 1e-100
357493695276 SNF1-related protein kinase regulatory b 0.978 0.989 0.648 6e-99
388494700276 unknown [Medicago truncatula] 0.978 0.989 0.641 8e-98
356501356283 PREDICTED: SNF1-related protein kinase r 0.978 0.964 0.640 5e-97
356554272284 PREDICTED: SNF1-related protein kinase r 0.978 0.961 0.634 2e-96
147797464 447 hypothetical protein VITISV_033732 [Viti 0.989 0.617 0.559 3e-96
77745436287 GAL83-like protein [Solanum tuberosum] 0.985 0.958 0.635 9e-96
5702015289 GAL83 protein [Solanum tuberosum] 0.985 0.951 0.634 1e-95
449452696285 PREDICTED: SNF1-related protein kinase r 0.985 0.964 0.615 6e-95
>gi|225435969|ref|XP_002270683.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Vitis vinifera] gi|296083943|emb|CBI24331.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/292 (65%), Positives = 221/292 (75%), Gaps = 19/292 (6%)

Query: 1   MGNANGREE-------------GGGGGGGVAGAGANDEIQINGGDHSMSNISPPATPHRS 47
           MGNANGREE             G  G   +    +    ++   D SM N +PP +P RS
Sbjct: 1   MGNANGREEVANIRDDPTARSNGDSGVRDIYAPNSTHPARVASSD-SMGN-TPPQSPGRS 58

Query: 48  RSPLLFAPQVRIRVPVAPLQRADDPPLFNQMRQHESHAAASNPLEKGVPTIITWNYGGNE 107
           RSPL+FAPQV    P+APLQR D P   NQM Q+E      +P E+G+P +I WNYGGN+
Sbjct: 59  RSPLMFAPQV----PIAPLQRRDGPASLNQMWQNEPQGGVEHPPEQGIPIMIAWNYGGND 114

Query: 108 VAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGV 167
           VAVEGSWDNWTSR+ L RSGKDHSILLVLPSGVYHYKFIVDG+WRYIPDLPF+ADE+G V
Sbjct: 115 VAVEGSWDNWTSRKTLQRSGKDHSILLVLPSGVYHYKFIVDGEWRYIPDLPFIADEMGRV 174

Query: 168 CNLLDVHSCVPEILDSVAEFEAPASPESSYSQALPSEEDYAKEPLTVPSQLHLTLLGTEN 227
           CNLLDV+  VPE L+SVAEFEAP SP SSYSQA P+EED+AKEP+ VP QLHLT+LG  N
Sbjct: 175 CNLLDVNDYVPENLESVAEFEAPPSPNSSYSQAFPAEEDFAKEPVLVPPQLHLTVLGMPN 234

Query: 228 SDEASSSKPKHVVLNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKPHKR 279
           S+E S SKP+HVVLNH+F++ GW S+SVVALGLT+RFQSKYVTVVLYKP KR
Sbjct: 235 SEEPSCSKPQHVVLNHLFIEKGWASQSVVALGLTNRFQSKYVTVVLYKPLKR 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|66710734|emb|CAI96820.1| SNF1-related protein kinase regulatory beta subunit 1 [Pisum sativum] Back     alignment and taxonomy information
>gi|357493695|ref|XP_003617136.1| SNF1-related protein kinase regulatory beta subunit [Medicago truncatula] gi|32364486|gb|AAO61676.1| AKIN beta1 [Medicago truncatula] gi|355518471|gb|AET00095.1| SNF1-related protein kinase regulatory beta subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|388494700|gb|AFK35416.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356501356|ref|XP_003519491.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356554272|ref|XP_003545472.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-1-like [Glycine max] Back     alignment and taxonomy information
>gi|147797464|emb|CAN73518.1| hypothetical protein VITISV_033732 [Vitis vinifera] Back     alignment and taxonomy information
>gi|77745436|gb|ABB02617.1| GAL83-like protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|5702015|emb|CAB52141.1| GAL83 protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|449452696|ref|XP_004144095.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-1-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
TAIR|locus:2178963320 AKINBETA1 "AT5G21170" [Arabido 0.777 0.678 0.680 4.4e-86
DICTYBASE|DDB_G0281089347 prkab "AMP-activated protein k 0.652 0.524 0.388 1.8e-30
UNIPROTKB|O43741272 PRKAB2 "5'-AMP-activated prote 0.663 0.680 0.371 2.2e-27
RGD|620905271 Prkab2 "protein kinase, AMP-ac 0.663 0.682 0.366 2.8e-27
UNIPROTKB|E1B986272 PRKAB2 "Uncharacterized protei 0.663 0.680 0.366 4.5e-27
UNIPROTKB|E2R145272 PRKAB2 "Uncharacterized protei 0.663 0.680 0.366 4.5e-27
UNIPROTKB|F1SDB6272 PRKAB2 "Uncharacterized protei 0.663 0.680 0.366 4.5e-27
MGI|MGI:1336185271 Prkab2 "protein kinase, AMP-ac 0.663 0.682 0.366 4.5e-27
UNIPROTKB|G3V9X3271 Prkab2 "5'-AMP-activated prote 0.663 0.682 0.366 4.5e-27
ZFIN|ZDB-GENE-080723-44269 prkab2 "protein kinase, AMP-ac 0.749 0.776 0.336 5.2e-26
TAIR|locus:2178963 AKINBETA1 "AT5G21170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 807 (289.1 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
 Identities = 149/219 (68%), Positives = 179/219 (81%)

Query:    61 VPVAPLQRADDPPLFNQMRQHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSR 120
             VPVAPLQRA+ PP  N ++ ++S     NP E+G+PTIITWN GGN+VAVEGSWDNW SR
Sbjct:   104 VPVAPLQRANAPPP-NNIQWNQSQRVFDNPPEQGIPTIITWNQGGNDVAVEGSWDNWRSR 162

Query:   121 RILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEI 180
             + L +SGKDHSIL VLPSG+YHYK IVDG+ +YIPDLPFVADE+G VCN+LDVH+ VPE 
Sbjct:   163 KKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVHNFVPEN 222

Query:   181 LDSVAEFEAPASPESSYSQALPSEEDYAKEPLTVPSQLHLTLLGTENSDEASSSKPKHVV 240
              +S+ EFEAP SP+ SY Q LP+ EDYAKEPL VP QLHLTLLGT   + A ++KP+HVV
Sbjct:   223 PESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLGT-TEETAIATKPQHVV 281

Query:   241 LNHVFVDDGWKSKSVVALGLTHRFQSKYVTVVLYKPHKR 279
             LNHVF++ GW  +S+VALGLTHRF+SKY+TVVLYKP  R
Sbjct:   282 LNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 320
GO:0004679 "AMP-activated protein kinase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
GO:0043562 "cellular response to nitrogen levels" evidence=IEP
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
DICTYBASE|DDB_G0281089 prkab "AMP-activated protein kinase beta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|O43741 PRKAB2 "5'-AMP-activated protein kinase subunit beta-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|620905 Prkab2 "protein kinase, AMP-activated, beta 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1B986 PRKAB2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R145 PRKAB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDB6 PRKAB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1336185 Prkab2 "protein kinase, AMP-activated, beta 2 non-catalytic subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9X3 Prkab2 "5'-AMP-activated protein kinase subunit beta-2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080723-44 prkab2 "protein kinase, AMP-activated, beta 2 non-catalytic subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84VQ1KINB1_ARATHNo assigned EC number0.61030.97490.9611yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
cd0285980 cd02859, E_set_AMPKbeta_like_N, N-terminal Early s 1e-27
pfam0473994 pfam04739, AMPKBI, 5'-AMP-activated protein kinase 4e-26
smart01010100 smart01010, AMPKBI, 5'-AMP-activated protein kinas 3e-17
>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit Back     alignment and domain information 
 Score =  101 bits (254), Expect = 1e-27
 Identities = 39/80 (48%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 96  PTIITWNY-GGNEVAVEGSWDNWTSRRILHRSGK-DHSILLVLPSGVYHYKFIVDGDWRY 153
           P    W   GG EV V GS+DNW     L +SG  + S  + LP G Y YKFIVDG+W +
Sbjct: 1   PVTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGDGEFSATVELPPGRYEYKFIVDGEWVH 60

Query: 154 IPDLPFVADELGGVCNLLDV 173
            PDLP V DE G + N+L+V
Sbjct: 61  DPDLPTVTDEFGNLNNVLEV 80

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80
>gnl|CDD|218238 pfam04739, AMPKBI, 5'-AMP-activated protein kinase beta subunit, interation domain Back     alignment and domain information
>gnl|CDD|214973 smart01010, AMPKBI, 5'-AMP-activated protein kinase beta subunit, interation domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 279
KOG1616289 consensus Protein involved in Snf1 protein kinase 100.0
PF04739100 AMPKBI: 5'-AMP-activated protein kinase beta subun 100.0
cd0285979 AMPKbeta_GBD_like AMP-activated protein kinase (AM 99.93
cd0286182 E_set_proteins_like E or "early" set-like proteins 99.77
cd0285885 Esterase_N_term Esterase N-terminal domain. Estera 99.03
cd0268883 E_set E or "early" set of sugar utilizing enzymes 98.65
PF0292285 CBM_48: Carbohydrate-binding module 48 (Isoamylase 98.15
cd0285499 Glycogen_branching_enzyme_like_N_term Glycogen bra 98.1
PF0068696 CBM_20: Starch binding domain; InterPro: IPR002044 97.48
cd02860100 Pullulanase_N_term Pullulanase domain N-terminus. 97.43
cd0580895 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2 97.37
cd0581892 CBM20_water_dikinase Phosphoglucan water dikinase 97.31
cd05814120 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate- 97.21
cd0580999 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 97.01
cd05820103 CBM20_novamyl Novamyl (also known as acarviose tra 97.0
cd02855106 Glycogen_branching_enzyme_N_term Glycogen branchin 96.87
cd0581395 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 96.71
COG0296 628 GlgB 1,4-alpha-glucan branching enzyme [Carbohydra 96.71
PLN02447 758 1,4-alpha-glucan-branching enzyme 96.67
cd02856103 Glycogen_debranching_enzyme_N_term Glycogen_debran 96.56
cd05811106 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g 96.55
cd0581699 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP 96.45
cd05807101 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat 96.36
PRK12568 730 glycogen branching enzyme; Provisional 96.33
PRK14705 1224 glycogen branching enzyme; Provisional 96.29
PRK12313 633 glycogen branching enzyme; Provisional 96.18
cd0546796 CBM20 The family 20 carbohydrate-binding module (C 96.09
cd02852119 Isoamylase_N_term Isoamylase N-terminus domain. Is 96.02
cd05817100 CBM20_DSP Dual-specificity phosphatase (DSP), N-te 95.96
cd0581097 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol 95.88
PRK14706 639 glycogen branching enzyme; Provisional 95.85
PRK05402 726 glycogen branching enzyme; Provisional 95.52
cd05815101 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP 95.07
PRK05402 726 glycogen branching enzyme; Provisional 95.06
PF0342387 CBM_25: Carbohydrate binding domain (family 25); I 95.02
TIGR02402 542 trehalose_TreZ malto-oligosyltrehalose trehalohydr 94.8
TIGR01515 613 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 94.14
cd05806112 CBM20_laforin Laforin protein tyrosine phosphatase 93.9
cd0285385 MTHase_N_term Maltooligosyl trehalose synthase (MT 92.59
PLN02950 909 4-alpha-glucanotransferase 91.27
PLN02316 1036 synthase/transferase 91.21
PLN02950 909 4-alpha-glucanotransferase 90.84
PLN02960 897 alpha-amylase 90.58
PF11806122 DUF3327: Domain of unknown function (DUF3327); Int 90.27
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 89.92
TIGR02104 605 pulA_typeI pullulanase, type I. Pullulan is an unu 89.23
PLN02316 1036 synthase/transferase 88.93
cd02857116 CD_pullulan_degrading_enzymes_N_term CD and pullul 87.51
PRK10439 411 enterobactin/ferric enterobactin esterase; Provisi 85.13
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.7e-52  Score=385.42  Aligned_cols=234  Identities=38%  Similarity=0.632  Sum_probs=206.7

Q ss_pred             CCCCCCCCCCCceeCCCCCcccccccccCCCCCcccchhhhccc-ccccCCCCCCceeEEEEeeCCCceEEEEecCCCCc
Q 023664           40 PPATPHRSRSPLLFAPQVRIRVPVAPLQRADDPPLFNQMRQHES-HAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWT  118 (279)
Q Consensus        40 pp~sp~~~~~p~~f~pq~~~~vpv~pl~r~~~~~~~~~~w~~~~-~~~~~~~~~~~vpv~f~W~~gg~~V~V~GSFnnW~  118 (279)
                      .+...+.-....+++|+    -+..++.++.+..+.+..|.+.+ ..+.......+.||+|+|.++++.|||+|||+||+
T Consensus        28 ~~~~~~~~~~~~~~s~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~pvvi~W~~gg~~v~v~gS~~nWk  103 (289)
T KOG1616|consen   28 KPGSERKIPSNSGFSPD----DPDPPSTRDEKERIDEGSWSQSQTGEDNEKDREQGRPTVIRWSQGGKEVYVDGSFGNWK  103 (289)
T ss_pred             CCCCccccccccccCCc----CCCCCcCcccccccccccccccccccccccccccCCceEEEecCCCceEEEeccccccc
Confidence            33334333333388999    99999999988888888887775 35566666789999999999999999999999999


Q ss_pred             cceeeeecCCc---EEEEEECCCceEEEEEEEcCeeecCCCCCeeeCCCCCeEeEEEeccCc--hhhhcccccc------
Q 023664          119 SRRILHRSGKD---HSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCV--PEILDSVAEF------  187 (279)
Q Consensus       119 ~~i~L~ks~~~---f~~~l~LppG~y~YKFiVDG~W~~dp~~P~~~D~~Gn~nNvl~V~~~~--pe~~~s~~~~------  187 (279)
                      .+++|.++++.   |++++.|++|.|+|||+|||+|++|+++|+++|..|++||+|+|.+.+  .+.++.+.++      
T Consensus       104 ~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v~~~~~v~~~~~~l~~~~~~~~~  183 (289)
T KOG1616|consen  104 TKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNLNNILEVQDPDEVFEVFQALEEDLPSSNH  183 (289)
T ss_pred             ccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCcccceEecCccccchhhhhhhhhcccccc
Confidence            99999998876   999999999999999999999999999999999999999999999988  8877777666      


Q ss_pred             ----cCCCCC-------CCCCccCCCCcCccCCC--CCCCChhhhcccCCCCCC---CCCCCCCCCeEeecceeeecccC
Q 023664          188 ----EAPASP-------ESSYSQALPSEEDYAKE--PLTVPSQLHLTLLGTENS---DEASSSKPKHVVLNHVFVDDGWK  251 (279)
Q Consensus       188 ----~~~~sp-------~~sY~~~~p~~~~~~~~--PP~LPp~L~~~iLN~~~~---d~~~Lp~P~HVvLNHLy~~si~~  251 (279)
                          +.+..+       ..+|+|++|+.+++.+.  ||.|||||.++|||+.+.   |+..|++|+||+|||||+++|  
T Consensus       184 ~~s~e~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~p~lpp~l~~v~lnk~~~~~~~~~~~~~p~hv~lnhl~~~si--  261 (289)
T KOG1616|consen  184 SESSEVPNLPEELEAKPLGSYTQEKPAVEDEEKAMAPPVLPPHLLQVILNKDTQVSCDPALLPEPNHVALNHLYALSI--  261 (289)
T ss_pred             ccccccCCCccccccccccccccccchhhcchhcccCCCCCcchheeeccccccccccccccCCccchhhhhhhhhcc--
Confidence                444444       88999999998887766  999999999999999887   799999999999999999996  


Q ss_pred             CCceEEEeeeeEecceeEEEEEeeecCC
Q 023664          252 SKSVVALGLTHRFQSKYVTVVLYKPHKR  279 (279)
Q Consensus       252 ~~~vl~l~~T~Ryk~KyVTtvlYkp~~~  279 (279)
                      |+++++|++||||++||||++||||+++
T Consensus       262 k~~~~~~~~~~r~~~k~vt~~lyk~~~~  289 (289)
T KOG1616|consen  262 KDGVMVLSFTHRYKKKYVTTGLYKPLQL  289 (289)
T ss_pred             CCCeeEecceecccccceeEEeeeeccC
Confidence            8999999999999999999999999975

>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD) Back     alignment and domain information
>cd02861 E_set_proteins_like E or "early" set-like proteins Back     alignment and domain information
>cd02858 Esterase_N_term Esterase N-terminal domain Back     alignment and domain information
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies Back     alignment and domain information
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain Back     alignment and domain information
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus Back     alignment and domain information
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain Back     alignment and domain information
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02447 1,4-alpha-glucan-branching enzyme Back     alignment and domain information
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain Back     alignment and domain information
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2 Back     alignment and domain information
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PRK12568 glycogen branching enzyme; Provisional Back     alignment and domain information
>PRK14705 glycogen branching enzyme; Provisional Back     alignment and domain information
>PRK12313 glycogen branching enzyme; Provisional Back     alignment and domain information
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase) Back     alignment and domain information
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain Back     alignment and domain information
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PRK14706 glycogen branching enzyme; Provisional Back     alignment and domain information
>PRK05402 glycogen branching enzyme; Provisional Back     alignment and domain information
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1 Back     alignment and domain information
>PRK05402 glycogen branching enzyme; Provisional Back     alignment and domain information
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase Back     alignment and domain information
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase Back     alignment and domain information
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain Back     alignment and domain information
>PLN02950 4-alpha-glucanotransferase Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>PLN02950 4-alpha-glucanotransferase Back     alignment and domain information
>PLN02960 alpha-amylase Back     alignment and domain information
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>TIGR02104 pulA_typeI pullulanase, type I Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain Back     alignment and domain information
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
2f15_A96 Glycogen-Binding Domain Of The Amp-Activated Protei 1e-14
1z0m_A96 The Glycogen-Binding Domain Of The Amp-Activated Pr 1e-12
1z0n_A96 The Glycogen-Binding Domain Of The Amp-Activated Pr 5e-12
2qlv_B252 Crystal Structure Of The Heterotrimer Core Of The S 8e-07
2v8q_B87 Crystal Structure Of The Regulatory Fragment Of Mam 2e-06
4eai_B85 Co-Crystal Structure Of An Ampk Core With Amp Lengt 2e-06
4eag_B85 Co-Crystal Structure Of An Chimeric Ampk Core With 1e-05
4eak_B72 Co-Crystal Structure Of An Ampk Core With Atp Lengt 1e-04
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96 Back     alignment and structure 
Iteration: 1

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 55/96 (57%)
Query: 86  AASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKF 145
            +  P ++  PT+I W+ GG EV + GS++NW+++  L +S  D   +L LP G + YKF
Sbjct: 1   GSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKF 60
Query: 146 IVDGDWRYIPDLPFVADELGGVCNLLDVHSCVPEIL 181
            VDG W + P  P V  +LG + NL+ V     E+ 
Sbjct: 61  FVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVF 96
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96 Back     alignment and structure
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96 Back     alignment and structure
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 252 Back     alignment and structure
>pdb|2V8Q|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 87 Back     alignment and structure
>pdb|4EAI|B Chain B, Co-Crystal Structure Of An Ampk Core With Amp Length = 85 Back     alignment and structure
>pdb|4EAG|B Chain B, Co-Crystal Structure Of An Chimeric Ampk Core With Atp Length = 85 Back     alignment and structure
>pdb|4EAK|B Chain B, Co-Crystal Structure Of An Ampk Core With Atp Length = 72 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
2qlv_B252 Protein SIP2, protein SPM2; heterotrimer, ATP-bind 3e-37
3t4n_B113 SNF1 protein kinase subunit beta-2; CBS domain, nu 9e-31
1z0n_A96 5'-AMP-activated protein kinase, beta-1 subunit; b 5e-29
2v8q_B87 5'-AMP-activated protein kinase subunit beta-2; ph 1e-23
2qrd_B97 SPCC1919.03C protein; AMPK, ADP, ATP-binding, kina 1e-23
3nme_A294 Ptpkis1 protein, SEX4 glucan phosphatase; dual spe 1e-17
4aee_A 696 Alpha amylase, catalytic region; hydrolase, hypert 6e-06
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252 Back     alignment and structure
 Score =  131 bits (330), Expect = 3e-37
 Identities = 45/250 (18%), Positives = 76/250 (30%), Gaps = 70/250 (28%)

Query: 95  VPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDH---SILLVLPSGVYHYKFIVDGDW 151
           VP  I W  GG++V V GS+  W     L     ++    + L L  G + ++FIVD + 
Sbjct: 4   VPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNEL 63

Query: 152 RYIPDLPFVADELGGVCNLLDVHSCVPEILDSVAEFEA---------------------- 189
           R    LP   D++G   N ++V        +     +                       
Sbjct: 64  RVSDFLPTATDQMGNFVNYIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQIGKDP 123

Query: 190 --------------PASPESSYSQALPSEEDYAKEPLTVPS------------------- 216
                            P   Y+  +P+                                
Sbjct: 124 DDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQL 183

Query: 217 --QLHLTLLGTENSDEASSSKPKH--------VVLNHVFVDDGWKSKSVVALGLTHRFQS 266
             QL   +L    + +   ++           VVLNH+         + + +    R++ 
Sbjct: 184 PPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSI--KHNTLCVASIVRYKQ 241

Query: 267 KYVTVVLYKP 276
           KYVT +LY P
Sbjct: 242 KYVTQILYTP 251
>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B* Length = 113 Back     alignment and structure
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96 Back     alignment and structure
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B* Length = 87 Back     alignment and structure
>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B* Length = 97 Back     alignment and structure
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294 Back     alignment and structure
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
2qlv_B252 Protein SIP2, protein SPM2; heterotrimer, ATP-bind 100.0
2v8q_B87 5'-AMP-activated protein kinase subunit beta-2; ph 100.0
2qrd_B97 SPCC1919.03C protein; AMPK, ADP, ATP-binding, kina 100.0
3t4n_B113 SNF1 protein kinase subunit beta-2; CBS domain, nu 99.97
1z0n_A96 5'-AMP-activated protein kinase, beta-1 subunit; b 99.94
3nme_A294 Ptpkis1 protein, SEX4 glucan phosphatase; dual spe 99.89
4aee_A 696 Alpha amylase, catalytic region; hydrolase, hypert 99.56
4aef_A 645 Neopullulanase (alpha-amylase II); hydrolase, ther 99.21
2z0b_A131 GDE5, KIAA1434, putative glycerophosphodiester pho 98.36
1ac0_A108 Glucoamylase; hydrolase, starch binding domain; HE 97.95
3c8d_A 403 Enterochelin esterase; alpha-beta-alpha sandwich, 97.87
1m7x_A 617 1,4-alpha-glucan branching enzyme; alpha/beta barr 97.07
3k1d_A 722 1,4-alpha-glucan-branching enzyme; mycobacterium t 96.72
3aml_A 755 OS06G0726400 protein; starch-branching, transferas 96.67
2laa_A104 Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa 96.05
2vn4_A599 Glucoamylase; hydrolase, carbohydrate binding, gly 95.69
1wzl_A 585 Alpha-amylase II; pullulan, GH-13, alpha-amylase f 95.34
1qho_A686 Alpha-amylase; glycoside hydrolase, starch degrada 95.32
3bmv_A683 Cyclomaltodextrin glucanotransferase; glycosidase, 95.08
1j0h_A 588 Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 94.79
1cyg_A680 Cyclodextrin glucanotransferase; glycosyltransfera 94.63
1d3c_A686 Cyclodextrin glycosyltransferase; alpha-amylase, p 94.62
1vem_A516 Beta-amylase; beta-alpha-barrels, optimum PH, hydr 94.52
3vgf_A 558 Malto-oligosyltrehalose trehalohydrolase; alpha/be 94.45
1bf2_A 750 Isoamylase; hydrolase, glycosidase, debranching en 94.43
2bhu_A 602 Maltooligosyltrehalose trehalohydrolase; alpha-amy 93.89
2vr5_A 718 Glycogen operon protein GLGX; hydrolase, glycosida 93.76
2wsk_A 657 Glycogen debranching enzyme; carbohydrate metaboli 93.76
2fhf_A 1083 Pullulanase; multiple domain, beta-alpha-barrel, a 91.96
4aio_A 884 Limit dextrinase; hydrolase, pullulanase, glycosid 91.42
1gcy_A527 Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b 91.12
1ea9_C 583 Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A 91.06
1ji1_A 637 Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 90.3
2e8y_A 718 AMYX protein, pullulanase; multiple domain, beta-a 90.27
2wan_A 921 Pullulanase; hydrolase, glycoside hydrolase, polys 89.9
2ya0_A 714 Putative alkaline amylopullulanase; hydrolase, gly 89.73
3m07_A 618 Putative alpha amylase; IDP00968, csgid, structura 87.27
3faw_A 877 Reticulocyte binding protein; TIM barrel, beta bar 87.03
2wan_A 921 Pullulanase; hydrolase, glycoside hydrolase, polys 85.08
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 83.38
4fch_A221 Outer membrane protein SUSE; starch binding, extra 81.95
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Back     alignment and structure
Probab=100.00  E-value=2e-61  Score=441.53  Aligned_cols=183  Identities=28%  Similarity=0.488  Sum_probs=129.6

Q ss_pred             CceeEEEEeeCCCceEEEEecCCCCccceeeeec---CCcEEEEEECCCceEEEEEEEcCeeecCCCCCeeeCCCCCeEe
Q 023664           93 KGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRS---GKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCN  169 (279)
Q Consensus        93 ~~vpv~f~W~~gg~~V~V~GSFnnW~~~i~L~ks---~~~f~~~l~LppG~y~YKFiVDG~W~~dp~~P~~~D~~Gn~nN  169 (279)
                      .++||+|+|.++|++|+|+|||++|+.+++|.|+   ++.|++++.|++|.|+|||+|||+|++|+++|++.|+.|++||
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nN   81 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcc
Confidence            4799999999999999999999999998999984   2579999999999999999999999999999999999999999


Q ss_pred             EEEeccCchhh------------------hc----------------ccccc--cCCCCCCCCCccCCCCc-------Cc
Q 023664          170 LLDVHSCVPEI------------------LD----------------SVAEF--EAPASPESSYSQALPSE-------ED  206 (279)
Q Consensus       170 vl~V~~~~pe~------------------~~----------------s~~~~--~~~~sp~~sY~~~~p~~-------~~  206 (279)
                      +|+|.+.++..                  ..                +.+++  +.+.+|.++|+|+||..       |+
T Consensus        82 vi~V~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~y~~eiP~~~~~~~~~e~  161 (252)
T 2qlv_B           82 YIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMER  161 (252)
T ss_dssp             EEEECC----------------------------------------------------------CCCCCGGGTCHHHHHH
T ss_pred             eeeccCccccccccccccccccccccccccccccccccccCccccccccccccccCCCCCcccccccCCchhcccchhhh
Confidence            99998743111                  00                01112  45678899999999974       22


Q ss_pred             c--------------CCCCCCCChhhhcccCCCCCC--------CCCCCCCCCeEeecceeeecccCCCceEEEeeeeEe
Q 023664          207 Y--------------AKEPLTVPSQLHLTLLGTENS--------DEASSSKPKHVVLNHVFVDDGWKSKSVVALGLTHRF  264 (279)
Q Consensus       207 ~--------------~~~PP~LPp~L~~~iLN~~~~--------d~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T~Ry  264 (279)
                      |              .++||+|||||+++|||+.+.        |+++||+|||||||||||+||  |++||||||||||
T Consensus       162 ~~~~~d~~~~~~~~~~~~PP~LPphL~~~iLN~~~~~~~~~~~~~~~~Lp~PnHVvLNHL~~~sI--k~~vlal~~T~RY  239 (252)
T 2qlv_B          162 YYYTLDRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSI--KHNTLCVASIVRY  239 (252)
T ss_dssp             HHHHHCC-----------CCCCCCC----------------------------CCSCCBCEECCC--CSSEEEEEEEEEE
T ss_pred             hhhcccccccccccccCCCCCCChhhcchhcCCCCccccccccCCcccCCCCCEEEeeeEEEecc--cCCEEEEeeeeee
Confidence            2              389999999999999999653        578999999999999999998  7999999999999


Q ss_pred             cceeEEEEEeeec
Q 023664          265 QSKYVTVVLYKPH  277 (279)
Q Consensus       265 k~KyVTtvlYkp~  277 (279)
                      |+|||||||||||
T Consensus       240 k~KyVTtvlYkP~  252 (252)
T 2qlv_B          240 KQKYVTQILYTPI  252 (252)
T ss_dssp             TTEEEEEEEEEEC
T ss_pred             cceeEEEEEEeeC
Confidence            9999999999997
>2v8q_B 5'-AMP-activated protein kinase subunit beta-2; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Homo sapiens} SCOP: d.353.1.1 PDB: 2v92_B* 2v9j_B* 2y8l_B* 2y8q_B* 2y94_B* 2ya3_B* Back     alignment and structure
>2qrd_B SPCC1919.03C protein; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.353.1.1 PDB: 2ooy_B* 2qr1_B* 2qrc_B* 2oox_B* 2qre_B* Back     alignment and structure
>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_B* 3te5_B* Back     alignment and structure
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Back     alignment and structure
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Back     alignment and structure
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus} Back     alignment and structure
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens} Back     alignment and structure
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A Back     alignment and structure
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* Back     alignment and structure
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* Back     alignment and structure
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Back     alignment and structure
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Back     alignment and structure
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A Back     alignment and structure
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Back     alignment and structure
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Back     alignment and structure
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Back     alignment and structure
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Back     alignment and structure
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Back     alignment and structure
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Back     alignment and structure
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Back     alignment and structure
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A Back     alignment and structure
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A Back     alignment and structure
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Back     alignment and structure
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* Back     alignment and structure
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A Back     alignment and structure
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} Back     alignment and structure
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* Back     alignment and structure
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A Back     alignment and structure
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Back     alignment and structure
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Back     alignment and structure
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A Back     alignment and structure
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* Back     alignment and structure
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} Back     alignment and structure
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* Back     alignment and structure
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} Back     alignment and structure
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* Back     alignment and structure
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 279
d1z0na187 b.1.18.21 (A:77-163) 5'-AMP-activated protein kina 5e-28
d2v8qb183 d.353.1.1 (B:190-272) 5'-AMP-activated protein kin 3e-24
d2qrdb193 d.353.1.1 (B:205-297) AMP-activated protein kinase 2e-23
d2qlvb187 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi 4e-23
d2qlvb2107 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisi 7e-20
>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score =  101 bits (252), Expect = 5e-28
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 95  VPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYI 154
            PT+  W  GG EV + GS++NW S+  + RS  +   +L LP G + YKF VDG W + 
Sbjct: 2   RPTVFRWTGGGKEVYLSGSFNNW-SKLPMTRSQNNFVAILDLPEGEHQYKFFVDGQWTHD 60

Query: 155 PDLPFVADELGGVCNLLDV 173
           P  P V  +LG V N++ V
Sbjct: 61  PSEPIVTSQLGTVNNIIQV 79
>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta subunit {Schizosaccharomyces pombe [TaxId: 4896]} Length = 93 Back     information, alignment and structure
>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87 Back     information, alignment and structure
>d2qlvb2 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
d2qrdb193 AMP-activated protein kinase beta subunit {Schizos 100.0
d2v8qb183 5'-AMP-activated protein kinase subunit beta-2 {Hu 100.0
d2qlvb2107 SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} 99.97
d1z0na187 5'-AMP-activated protein kinase subunit beta-1 {Ra 99.95
d2qlvb187 SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} 99.95
d1m7xa1110 1,4-alpha-glucan branching enzyme, N-terminal doma 98.14
d2bhua197 Glycosyltrehalose trehalohydrolase, N-terminal dom 98.05
d3bmva2105 Cyclodextrin glycosyltransferase, C-terminal domai 97.54
d1qhoa2110 Cyclodextrin glycosyltransferase, C-terminal domai 97.47
d1kula_108 Glucoamylase, granular starch-binding domain {Aspe 97.46
d1cyga2106 Cyclodextrin glycosyltransferase, C-terminal domai 97.32
d1vema199 beta-amylase {Bacillus cereus [TaxId: 1396]} 97.09
d1eh9a190 Glycosyltrehalose trehalohydrolase, N-terminal dom 95.39
d1bf2a1162 Isoamylase, N-terminal domain N {Pseudomonas amylo 93.71
d2fhfa1115 Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 90.26
d3c8da1145 Enterochelin esterase {Shigella flexneri 2a str. 2 81.43
>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta subunit {Schizosaccharomyces pombe [TaxId: 4896]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: AMPKBI-like
superfamily: AMPKBI-like
family: AMPKBI-like
domain: AMP-activated protein kinase beta subunit
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=100.00  E-value=4.5e-36  Score=233.67  Aligned_cols=82  Identities=30%  Similarity=0.572  Sum_probs=76.9

Q ss_pred             CCCccCCCC-------cCccCCCCCCCChhhhcccCCCCCC---CCCCCCCCCeEeecceeeecccCCCceEEEeeeeEe
Q 023664          195 SSYSQALPS-------EEDYAKEPLTVPSQLHLTLLGTENS---DEASSSKPKHVVLNHVFVDDGWKSKSVVALGLTHRF  264 (279)
Q Consensus       195 ~sY~~~~p~-------~~~~~~~PP~LPp~L~~~iLN~~~~---d~~~Lp~P~HVvLNHLy~~si~~~~~vl~l~~T~Ry  264 (279)
                      ++|+++||+       .++..++||.|||||+++|||++++   |++.||+|+||||||||++||  |++|+|||+||||
T Consensus         2 ~~y~~~iP~~~~~~~~~~~~~~~PP~lPphL~~tiLN~~~~~~d~~~~Lp~P~HVvLNHLy~~si--k~~vlalg~T~Ry   79 (93)
T d2qrdb1           2 EQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANT--QLGVLALSATTRY   79 (93)
T ss_dssp             CCCBSSCCGGGSCC--CCSCCCCCCBCCGGGSCCGGGCCTTHHHHTTBCCCCCGGGTTBCEEECC--SSSSEEEEEEEEE
T ss_pred             cchhhhcChhhccccchhhccCCCCCCChHHceeccCCCCCCCCCcccCCCCCEEEeeheeeccc--cCceEEEEeEEEe
Confidence            689999997       4667899999999999999999877   689999999999999999998  7999999999999


Q ss_pred             cceeEEEEEeeecC
Q 023664          265 QSKYVTVVLYKPHK  278 (279)
Q Consensus       265 k~KyVTtvlYkp~~  278 (279)
                      |+||||+|||||+|
T Consensus        80 ~~KyVT~VlYkPlq   93 (93)
T d2qrdb1          80 HRKYVTTAMFKNFD   93 (93)
T ss_dssp             TTEEEEEEEEECCC
T ss_pred             cceeEEEEEeccCC
Confidence            99999999999986
>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qlvb2 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Back     information, alignment and structure
>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]} Back     information, alignment and structure
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Back     information, alignment and structure
>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Back     information, alignment and structure
>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]} Back     information, alignment and structure
>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Back     information, alignment and structure