Citrus Sinensis ID: 023670

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MATGLIRRAISSSAAVAQPARLLTARFHASEAEAQKVEPKASANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHcccccHHHHHHHHHHcHHHHccccccccccccEEEEEEEEEcccccccccEEEEEEEcccccccHHHHHHHHHHccccccccccccccccccccccEEccccccEEEcccccccccEEEEEcccccccEEEEccccHHHHHHHHcccEEEcccccccccccccccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHccccccEEcccccccccccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcHHcccHHHHHHHHHHccccccccccccccccccEEEEEEEEEcccccccccccEEEEEcccccHHHHHHHHHHHHHcccccccccccccccccccEEEEccEEEEHHHcccccccccEEEEcccccHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccHHHEEEEcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHcccccEEEEEcEEcccHccccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MATGLIRRAISSSAAVAQPARLLTARFHASEaeaqkvepkasantdtkkfqiyrwnpdspskpelKEFEINLKECGPMVLDALIKIkseidpsltfrrscregicgscamnidgcnglacltkispsgsastitplphMFVIKDLVVDMTNFYNqyksiepwlkrknpppmpgkeipqskkdrakldgmyecilcaccstscpsywwtseaylgpAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILncaracpkglnpgkqiinikqLQLKR
Flexible Loop (DISEMBL)
MATGLIRraisssaavaqPARLLTARFHASEaeaqkvepkasantdtkkfqiyrwnpdspskPELKEFEINLKECGPMVLDALIKIKseidpsltfrrSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYksiepwlkrknpppmpgKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCAracpkglnpgkqiinikqlqlkr
Low Complexity Region (SEG)
MATGLirraisssaaVAQPARLLTARFHASEAEAQKVEPKASANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR
Disordered region (IsUnstruct)
**************************************************QIYRW***********EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWL**********************LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIK******
Disordered Region (DISOPRED)
*************************************************FQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR****************DRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ***
Disordered Region (DISEMBL)
MATGLIRRAISSSAAVAQPARLLTARFHAS***************DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR
Disordered Region (DISPRO)
********AISSSAAVAQ**RLLT************V*****ANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKN********IPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATGLIRRAISSSAAVAQPARLLTARFHASEAEAQKVEPKASANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q8LB02	280	Succinate dehydrogenase [	yes	no	0.989	0.985	0.783	1e-129
Q8LBZ7	279	Succinate dehydrogenase [	no	no	0.989	0.989	0.780	1e-127
Q9YHT2	290	Succinate dehydrogenase [	yes	no	0.921	0.886	0.6	2e-91
P21914	297	Succinate dehydrogenase [	yes	no	0.863	0.811	0.632	3e-91
Q3B8J8	282	Succinate dehydrogenase [	N/A	no	0.956	0.946	0.579	1e-89
A5PL98	280	Succinate dehydrogenase [	yes	no	0.824	0.821	0.650	1e-89
O42772	297	Succinate dehydrogenase [	N/A	no	0.845	0.794	0.635	3e-89
Q70KF8	283	Succinate dehydrogenase [	N/A	no	0.870	0.858	0.641	8e-89
B0BM36	284	Succinate dehydrogenase [	yes	no	0.817	0.802	0.652	1e-88
P21911	275	Succinate dehydrogenase [	yes	no	0.892	0.905	0.611	2e-88

>sp|Q8LB02|DHSB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1 SV=2

 Score =  461 bits (1185), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/277 (78%), Positives = 240/277 (86%), Gaps = 1/277 (0%)

Query: 1   MATGLIRRAISS-SAAVAQPARLLTARFHASEAEAQKVEPKASANTDTKKFQIYRWNPDS 59
           MA GLI R + + S+ ++  ARL+ AR+ ++ +EAQ            K FQIYRWNPD+
Sbjct: 1   MAFGLIGRVVGTKSSRLSTAARLIPARWTSTGSEAQSKASTGGGGASLKTFQIYRWNPDN 60

Query: 60  PSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA 119
           P KPEL++++I+LK+CGPMVLDALIKIK+E+DPSLTFRRSCREGICGSCAMNIDGCNGLA
Sbjct: 61  PGKPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLA 120

Query: 120 CLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQS 179
           CLTKI      +TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNP  +PGKEI QS
Sbjct: 121 CLTKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQS 180

Query: 180 KKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEA 239
           KKDRAKLDGMYECILCACCSTSCPSYWW  E+YLGPAALLHANRWISDSRDEYTKERLEA
Sbjct: 181 KKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEA 240

Query: 240 IDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ 276
           IDDEFKLYRCHTILNCARACPKGLNPGKQI +IKQLQ
Sbjct: 241 IDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 277

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 5EC: .EC: 1

>sp|Q8LBZ7|DHSB1_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH2-1 PE=1 SV=2

 Score =  455 bits (1171), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/278 (78%), Positives = 241/278 (86%), Gaps = 2/278 (0%)

Query: 1   MATGLIRRAISSS-AAVAQPARLLTARFHASEAEAQ-KVEPKASANTDTKKFQIYRWNPD 58
           MA+GLI R + +  + +A  ARL+ AR+ ++ AEA+ K        ++ K FQIYRWNPD
Sbjct: 1   MASGLIGRLVGTKPSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWNPD 60

Query: 59  SPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL 118
           +P KPEL+ ++I+LK+CGPMVLDALIKIK+E+DPSLTFRRSCREGICGSCAMNIDGCNGL
Sbjct: 61  NPGKPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGL 120

Query: 119 ACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQ 178
           ACLTKI    S +TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK P  +P KEI Q
Sbjct: 121 ACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEILQ 180

Query: 179 SKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLE 238
           SKKDRAKLDGMYECILCACCSTSCPSYWW  E+YLGPAALLHANRWISDSRDEYTKERLE
Sbjct: 181 SKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLE 240

Query: 239 AIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ 276
           AIDDEFKLYRCHTILNCARACPKGLNPGKQI +IKQLQ
Sbjct: 241 AIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 278

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q9YHT2|DHSB_CHICK Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus GN=SDHB PE=1 SV=1

 Score =  335 bits (859), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/265 (60%), Positives = 194/265 (73%), Gaps = 8/265 (3%)

Query: 19  PARLLTARF------HASEAEAQKVEPKASANTDTKKFQIYRWNPDSPS-KPELKEFEIN 71
           PAR L A         A     +  +  A+A +  KKF IYRW+PD P  KP ++ +E++
Sbjct: 15  PARFLRAGLRPVRGLEAVHGICRGAQTAAAATSRIKKFSIYRWDPDKPGDKPRMQTYEVD 74

Query: 72  LKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSAS 131
           L +CGPMVLDALIKIK+E+D +LTFRRSCREGICGSCAMNI G N LAC  KI P  S +
Sbjct: 75  LNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKT 134

Query: 132 T-ITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMY 190
           T I PLPHM+V+KDLV D++NFY QYKSIEP+LK+K+      ++  QS +DR KLDG+Y
Sbjct: 135 TKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLY 194

Query: 191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCH 250
           ECILCACCSTSCPSYWW  + YLGPA L+ A RW+ DSRD+YT+ERL  + D F LYRCH
Sbjct: 195 ECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCH 254

Query: 251 TILNCARACPKGLNPGKQIINIKQL 275
           TI+NC R CPKGLNPGK I  IK++
Sbjct: 255 TIMNCTRTCPKGLNPGKAIAEIKKM 279

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|P21914|DHSB_DROME Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Drosophila melanogaster GN=SdhB PE=2 SV=2

 Score =  335 bits (858), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 155/245 (63%), Positives = 192/245 (78%), Gaps = 4/245 (1%)

Query: 35  QKVEPKASANTDTKKFQIYRWNPDSPS-KPELKEFEINLKECGPMVLDALIKIKSEIDPS 93
           Q+ +PK +     KKF+IYRWNPD+   KP ++ +E++L+ECGPMVLDALIKIK+E+DP+
Sbjct: 34  QQAQPKEAQEPQIKKFEIYRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPT 93

Query: 94  LTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSAS-TITPLPHMFVIKDLVVDMTNF 152
           LTFRRSCREGICGSCAMNI G N LAC++KI  + S S  + PLPHM+V++DLV DM NF
Sbjct: 94  LTFRRSCREGICGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDMNNF 153

Query: 153 YNQYKSIEPWLKRKNPP-PMPGK-EIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSE 210
           Y QY++I+PWL+RKN      GK +  QS +DR+KLDG+YECILCACCSTSCPSYWW +E
Sbjct: 154 YEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCACCSTSCPSYWWNAE 213

Query: 211 AYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQII 270
            YLGPA L+ A RWI DSRDE + ERL  + D F +YRCHTI+NC R CPKGLNPG+ I 
Sbjct: 214 KYLGPAVLMQAYRWIIDSRDENSAERLNKLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIA 273

Query: 271 NIKQL 275
            IK+L
Sbjct: 274 EIKKL 278

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q3B8J8|DHSB_XENLA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus laevis GN=sdhb PE=2 SV=1

 Score =  330 bits (845), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 156/269 (57%), Positives = 194/269 (72%), Gaps = 2/269 (0%)

Query: 9   AISSSAAVAQPARLLTARFHASEAEAQKVEPKASANTDTKKFQIYRWNPDSPS-KPELKE 67
           A+  S   + P   L+     S        P + A    KKF IYRW+PD P  KP ++ 
Sbjct: 3   AVVFSLRRSGPVLRLSGALQVSRGAQTAAAPASQAAARIKKFAIYRWDPDKPGDKPRMQT 62

Query: 68  FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPS 127
           +E++L  CGPMVLDALIKIK+E+DP+LTFRRSCREGICGSCAMNI+G N LAC  +I  +
Sbjct: 63  YEVDLNTCGPMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNINGGNTLACTVRIDTN 122

Query: 128 GS-ASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKL 186
            S  S I PLPHM+V+KDLV D++NFY QYKSIEP+LK+K+      ++  QS +DR KL
Sbjct: 123 LSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDKSQQGKEQYLQSIEDRDKL 182

Query: 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKL 246
           DG+YECILCACCSTSCPSYWW ++ YLGPA L+ A RW+ DSRD++T+ERL  + D F L
Sbjct: 183 DGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTEERLSKLQDPFSL 242

Query: 247 YRCHTILNCARACPKGLNPGKQIINIKQL 275
           YRCHTI+NC R CPKGLNPGK I  IK++
Sbjct: 243 YRCHTIMNCTRTCPKGLNPGKAIAEIKKM 271

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|A5PL98|DHSB_DANRE Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Danio rerio GN=sdhb PE=2 SV=1

 Score =  329 bits (844), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 151/232 (65%), Positives = 185/232 (79%), Gaps = 2/232 (0%)

Query: 48  KKFQIYRWNPDSPS-KPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICG 106
           KKFQIYRW+PD+   KP ++ +EI+L  CGPMVLDALIKIK+E+D +LTFRRSCREGICG
Sbjct: 39  KKFQIYRWDPDTVGDKPRMQTYEIDLNTCGPMVLDALIKIKNEMDSTLTFRRSCREGICG 98

Query: 107 SCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 165
           SCAMNI+G N LACL KI  + S  T I PLPHM+V+KDLV DM+NFY QYKSIEP+LK+
Sbjct: 99  SCAMNINGGNTLACLNKIDTNTSKVTKIYPLPHMYVVKDLVPDMSNFYAQYKSIEPYLKK 158

Query: 166 KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWI 225
           K+      ++  QS +DR KLDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A RW+
Sbjct: 159 KDESQQGKQQYLQSVEDRQKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWM 218

Query: 226 SDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQL 277
            DSRD++T++RL  + D F LYRCHTI+NC R CPKGLNPGK I  IK++ +
Sbjct: 219 IDSRDDFTEDRLSKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMV 270

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|O42772|DHSB_MYCGR Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Mycosphaerella graminicola GN=SDH2 PE=3 SV=1

 Score =  328 bits (841), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 152/239 (63%), Positives = 185/239 (77%), Gaps = 3/239 (1%)

Query: 38  EPKASANTDTKKFQIYRWNPDSPS-KPELKEFEINLKECGPMVLDALIKIKSEIDPSLTF 96
           EP+  A+  TK F IYRWNPD P+ KP ++ + ++L + GPM+LDALI+IK+E+DP+LTF
Sbjct: 54  EPQMDADAKTKTFHIYRWNPDQPTDKPRMQSYTLDLNKTGPMMLDALIRIKNEVDPTLTF 113

Query: 97  RRSCREGICGSCAMNIDGCNGLACLTKI-SPSGSASTITPLPHMFVIKDLVVDMTNFYNQ 155
           RRSCREGICGSCAMNIDG N LACL +I + +   + I PLPH +V+KDLV DMT FY Q
Sbjct: 114 RRSCREGICGSCAMNIDGVNTLACLCRIPTDTAKETRIYPLPHTYVVKDLVPDMTQFYKQ 173

Query: 156 YKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGP 215
           YKSI+P+L+R   PP  GKE  QS  DR KLDG+YECILCACCSTSCPSYWW SE YLGP
Sbjct: 174 YKSIKPYLQRDTAPP-DGKENRQSVADRKKLDGLYECILCACCSTSCPSYWWNSEEYLGP 232

Query: 216 AALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQ 274
           A LL + RWI+DSRDE T +R +A+++   LYRCHTILNC+R CPKGLNP   I  IK+
Sbjct: 233 AVLLQSYRWINDSRDEKTAQRKDALNNSMSLYRCHTILNCSRTCPKGLNPALAIAEIKK 291

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Mycosphaerella graminicola (taxid: 1047171)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q70KF8|DHSB_UROFA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Uromyces fabae GN=SDH2 PE=3 SV=1

 Score =  327 bits (837), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 159/248 (64%), Positives = 188/248 (75%), Gaps = 5/248 (2%)

Query: 29  ASEAEAQKVEPKASANTDTKKFQIYRWNPDSPSK-PELKEFEINLKECGPMVLDALIKIK 87
           A+ AE    +  +SA    K+F IYRWNPD PSK P L+ + I+LK+CGPMVLDALIKIK
Sbjct: 34  ATPAEEHAGKQPSSA-VPVKEFSIYRWNPDEPSKKPTLQTYSIDLKKCGPMVLDALIKIK 92

Query: 88  SEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLV 146
           +E+DP+LTFRRSCREGICGSCAMNIDG N LACL +I+   SA   I PLPHM++IKDLV
Sbjct: 93  NELDPTLTFRRSCREGICGSCAMNIDGVNTLACLKRINKETSAPVKIYPLPHMYIIKDLV 152

Query: 147 VDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYW 206
            DMT+FY QYKSIEP+LK  NPP     E  QS +DR KLDGMYECILCACCSTSCPSYW
Sbjct: 153 PDMTHFYKQYKSIEPFLKNDNPPAQ--GEFLQSPEDRKKLDGMYECILCACCSTSCPSYW 210

Query: 207 WTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPG 266
           W  + YLGPA L+ A RW++DSRD Y ++R E + +   LYRCHTI NC + CPKGLNP 
Sbjct: 211 WNQDEYLGPAVLMQAYRWMADSRDSYGEDRKEKLQNTLSLYRCHTIFNCTKTCPKGLNPA 270

Query: 267 KQIINIKQ 274
           K I +IK+
Sbjct: 271 KAISHIKR 278

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Uromyces fabae (taxid: 55588)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|B0BM36|DHSB_XENTR Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus tropicalis GN=sdhb PE=2 SV=1

 Score =  326 bits (835), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 150/230 (65%), Positives = 183/230 (79%), Gaps = 2/230 (0%)

Query: 48  KKFQIYRWNPDSPS-KPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICG 106
           KKF IYRW+PD P  KP ++ +E++L ECG MVLDALIKIK+E+DP+LTFRRSCREGICG
Sbjct: 44  KKFAIYRWDPDKPGDKPRMQTYEVDLNECGSMVLDALIKIKNEMDPTLTFRRSCREGICG 103

Query: 107 SCAMNIDGCNGLACLTKISPSGS-ASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 165
           SCAMNI+G N LAC  +I  + S  S I PLPHM+V+KDLV D++NFY QYKSIEP+LK+
Sbjct: 104 SCAMNINGGNTLACTVRIDTNLSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKK 163

Query: 166 KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWI 225
           K+      ++  QS +DR KLDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A RW+
Sbjct: 164 KDESQEGKEQYLQSIEDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWM 223

Query: 226 SDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 275
            DSRD+YT+ERL  + D F LYRCHTI+NC R CPKGLNPGK I  IK++
Sbjct: 224 IDSRDDYTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKM 273

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|P21911|DHSB_SCHPO Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sdh2 PE=3 SV=3

 Score =  325 bits (834), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 156/255 (61%), Positives = 188/255 (73%), Gaps = 6/255 (2%)

Query: 24  TARFHASEAE--AQKVEPKASANTDTKKFQIYRWNPDSPS-KPELKEFEINLKECGPMVL 80
            AR  A+EA   A    P+ S   + K F+IYRWNP+ P  KP+L+++ ++L +CGPMVL
Sbjct: 20  NARMMATEANISATSANPQ-SQGENLKTFEIYRWNPEKPEVKPKLQKYTVDLTKCGPMVL 78

Query: 81  DALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMF 140
           DALIKIK+E DP+LTFRRSCREGICGSCAMNI+G N LAC+  I      + I PLPH F
Sbjct: 79  DALIKIKNEQDPTLTFRRSCREGICGSCAMNINGSNTLACICNIKKDNKPTKIYPLPHCF 138

Query: 141 VIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCST 200
           ++KDLV D+T FY QYKSIEPWL+  N P    KE  QS+ DRAKLDG+YECILCACCST
Sbjct: 139 IVKDLVPDLTYFYKQYKSIEPWLQNDNIPK--DKEFYQSRADRAKLDGLYECILCACCST 196

Query: 201 SCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACP 260
           SCPSYWW SE YLGPA L+ A RWI DSRD+ T +RL+ + +   +YRCHTI+NCAR CP
Sbjct: 197 SCPSYWWNSEEYLGPAVLMQAYRWIIDSRDQATAKRLDVMQNSMSVYRCHTIMNCARTCP 256

Query: 261 KGLNPGKQIINIKQL 275
           KGLNPG  I  +K L
Sbjct: 257 KGLNPGLAIAKVKAL 271

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2168818	280	SDH2-2 "succinate dehydrogenas	0.989	0.985	0.772	5.4e-118
TAIR|locus:2086716	279	SDH2-1 "succinate dehydrogenas	0.989	0.989	0.773	1.8e-117
FB|FBgn0014028	297	SdhB "Succinate dehydrogenase	0.863	0.811	0.632	2e-86
UNIPROTKB|F1NNF7	290	SDHB "Succinate dehydrogenase	0.921	0.886	0.6	1.8e-85
UNIPROTKB|Q9YHT2	290	SDHB "Succinate dehydrogenase	0.842	0.810	0.645	3e-85
UNIPROTKB|Q3B8J8	282	sdhb "Succinate dehydrogenase	0.921	0.911	0.594	3e-85
UNIPROTKB|B0BM36	284	sdhb "Succinate dehydrogenase	0.863	0.848	0.636	1e-84
ZFIN|ZDB-GENE-030131-8005	280	sdhb "succinate dehydrogenase	0.910	0.907	0.606	1e-84
POMBASE|SPAC140.01	275	sdh2 "succinate dehydrogenase	0.888	0.901	0.614	1.3e-84
TAIR|locus:504954878	309	SDH2-3 "succinate dehydrogenas	0.820	0.741	0.665	1.5e-83

TAIR|locus:2168818 SDH2-2 "succinate dehydrogenase 2-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
 Identities = 214/277 (77%), Positives = 234/277 (84%)

Query:     1 MATGLXXXXXXXXXX-VAQPARLLTARFHASEAEAQKVEPKASANTDTKKFQIYRWNPDS 59
             MA GL           ++  ARL+ AR+ ++ +EAQ            K FQIYRWNPD+
Sbjct:     1 MAFGLIGRVVGTKSSRLSTAARLIPARWTSTGSEAQSKASTGGGGASLKTFQIYRWNPDN 60

Query:    60 PSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA 119
             P KPEL++++I+LK+CGPMVLDALIKIK+E+DPSLTFRRSCREGICGSCAMNIDGCNGLA
Sbjct:    61 PGKPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLA 120

Query:   120 CLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQS 179
             CLTKI      +TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNP  +PGKEI QS
Sbjct:   121 CLTKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQS 180

Query:   180 KKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEA 239
             KKDRAKLDGMYECILCACCSTSCPSYWW  E+YLGPAALLHANRWISDSRDEYTKERLEA
Sbjct:   181 KKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEA 240

Query:   240 IDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ 276
             IDDEFKLYRCHTILNCARACPKGLNPGKQI +IKQLQ
Sbjct:   241 IDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 277

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000104 "succinate dehydrogenase activity" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0045281 "succinate dehydrogenase complex" evidence=ISS

GO:0005749 "mitochondrial respiratory chain complex II" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

TAIR|locus:2086716 SDH2-1 "succinate dehydrogenase 2-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
 Identities = 215/278 (77%), Positives = 236/278 (84%)

Query:     1 MATGLXXXXXXXX-XXVAQPARLLTARFHASEAEAQ-KVEPKASANTDTKKFQIYRWNPD 58
             MA+GL           +A  ARL+ AR+ ++ AEA+ K        ++ K FQIYRWNPD
Sbjct:     1 MASGLIGRLVGTKPSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWNPD 60

Query:    59 SPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL 118
             +P KPEL+ ++I+LK+CGPMVLDALIKIK+E+DPSLTFRRSCREGICGSCAMNIDGCNGL
Sbjct:    61 NPGKPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGL 120

Query:   119 ACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQ 178
             ACLTKI    S +TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK P  +P KEI Q
Sbjct:   121 ACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEILQ 180

Query:   179 SKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLE 238
             SKKDRAKLDGMYECILCACCSTSCPSYWW  E+YLGPAALLHANRWISDSRDEYTKERLE
Sbjct:   181 SKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLE 240

Query:   239 AIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ 276
             AIDDEFKLYRCHTILNCARACPKGLNPGKQI +IKQLQ
Sbjct:   241 AIDDEFKLYRCHTILNCARACPKGLNPGKQITHIKQLQ 278

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000104 "succinate dehydrogenase activity" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0045281 "succinate dehydrogenase complex" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IDA

FB|FBgn0014028 SdhB "Succinate dehydrogenase B" [Drosophila melanogaster (taxid:7227)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 155/245 (63%), Positives = 192/245 (78%)

Query:    35 QKVEPKASANTDTKKFQIYRWNPDSPS-KPELKEFEINLKECGPMVLDALIKIKSEIDPS 93
             Q+ +PK +     KKF+IYRWNPD+   KP ++ +E++L+ECGPMVLDALIKIK+E+DP+
Sbjct:    34 QQAQPKEAQEPQIKKFEIYRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPT 93

Query:    94 LTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNF 152
             LTFRRSCREGICGSCAMNI G N LAC++KI  + S S  + PLPHM+V++DLV DM NF
Sbjct:    94 LTFRRSCREGICGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDMNNF 153

Query:   153 YNQYKSIEPWLKRKNPP-PMPGK-EIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSE 210
             Y QY++I+PWL+RKN      GK +  QS +DR+KLDG+YECILCACCSTSCPSYWW +E
Sbjct:   154 YEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCACCSTSCPSYWWNAE 213

Query:   211 AYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQII 270
              YLGPA L+ A RWI DSRDE + ERL  + D F +YRCHTI+NC R CPKGLNPG+ I 
Sbjct:   214 KYLGPAVLMQAYRWIIDSRDENSAERLNKLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIA 273

Query:   271 NIKQL 275
              IK+L
Sbjct:   274 EIKKL 278

GO:0008177 "succinate dehydrogenase (ubiquinone) activity" evidence=ISS;NAS

GO:0005749 "mitochondrial respiratory chain complex II" evidence=ISS;NAS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;NAS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|F1NNF7 SDHB "Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 159/265 (60%), Positives = 195/265 (73%)

Query:    19 PARLLTARFH------ASEAEAQKVEPKASANTDTKKFQIYRWNPDSPS-KPELKEFEIN 71
             PAR L A         A +   +  +  A+A +  KKF IYRW+PD P  KP ++ +E++
Sbjct:    15 PARFLRAGLRPVRGLEAVQGICRGAQTAAAATSRIKKFSIYRWDPDKPGDKPRMQTYEVD 74

Query:    72 LKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSAS 131
             L +CGPMVLDALIKIK+E+D +LTFRRSCREGICGSCAMNI G N LAC  KI P  S +
Sbjct:    75 LNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKT 134

Query:   132 T-ITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMY 190
             T I PLPHM+V+KDLV D++NFY QYKSIEP+LK+K+      ++  QS +DR KLDG+Y
Sbjct:   135 TKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLY 194

Query:   191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCH 250
             ECILCACCSTSCPSYWW  + YLGPA L+ A RW+ DSRD+YT+ERL  + D F LYRCH
Sbjct:   195 ECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCH 254

Query:   251 TILNCARACPKGLNPGKQIINIKQL 275
             TI+NC R CPKGLNPGK I  IK++
Sbjct:   255 TIMNCTRTCPKGLNPGKAIAEIKKM 279

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9YHT2 SDHB "Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 153/237 (64%), Positives = 186/237 (78%)

Query:    41 ASANTDTKKFQIYRWNPDSPS-KPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRS 99
             A+A +  KKF IYRW+PD P  KP ++ +E++L +CGPMVLDALIKIK+E+D +LTFRRS
Sbjct:    43 AAATSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRS 102

Query:   100 CREGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNFYNQYKS 158
             CREGICGSCAMNI G N LAC  KI P  S +T I PLPHM+V+KDLV D++NFY QYKS
Sbjct:   103 CREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKS 162

Query:   159 IEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAAL 218
             IEP+LK+K+      ++  QS +DR KLDG+YECILCACCSTSCPSYWW  + YLGPA L
Sbjct:   163 IEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVL 222

Query:   219 LHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 275
             + A RW+ DSRD+YT+ERL  + D F LYRCHTI+NC R CPKGLNPGK I  IK++
Sbjct:   223 MQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKM 279

GO:0009055 "electron carrier activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008177 "succinate dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA;TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005749 "mitochondrial respiratory chain complex II" evidence=ISS

GO:0048039 "ubiquinone binding" evidence=ISS

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=ISS

UNIPROTKB|Q3B8J8 sdhb "Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial" [Xenopus laevis (taxid:8355)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 154/259 (59%), Positives = 190/259 (73%)

Query:    19 PARLLTARFHASEAEAQKVEPKASANTDTKKFQIYRWNPDSPS-KPELKEFEINLKECGP 77
             P   L+     S        P + A    KKF IYRW+PD P  KP ++ +E++L  CGP
Sbjct:    13 PVLRLSGALQVSRGAQTAAAPASQAAARIKKFAIYRWDPDKPGDKPRMQTYEVDLNTCGP 72

Query:    78 MVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGS-ASTITPL 136
             MVLDALIKIK+E+DP+LTFRRSCREGICGSCAMNI+G N LAC  +I  + S  S I PL
Sbjct:    73 MVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNINGGNTLACTVRIDTNLSKVSKIYPL 132

Query:   137 PHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCA 196
             PHM+V+KDLV D++NFY QYKSIEP+LK+K+      ++  QS +DR KLDG+YECILCA
Sbjct:   133 PHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDKSQQGKEQYLQSIEDRDKLDGLYECILCA 192

Query:   197 CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCA 256
             CCSTSCPSYWW ++ YLGPA L+ A RW+ DSRD++T+ERL  + D F LYRCHTI+NC 
Sbjct:   193 CCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTEERLSKLQDPFSLYRCHTIMNCT 252

Query:   257 RACPKGLNPGKQIINIKQL 275
             R CPKGLNPGK I  IK++
Sbjct:   253 RTCPKGLNPGKAIAEIKKM 271

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005749 "mitochondrial respiratory chain complex II" evidence=ISS

GO:0048039 "ubiquinone binding" evidence=ISS

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=ISS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISS

UNIPROTKB|B0BM36 sdhb "Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 156/245 (63%), Positives = 188/245 (76%)

Query:    34 AQKVEPKASANTDTKKFQIYRWNPDSPS-KPELKEFEINLKECGPMVLDALIKIKSEIDP 92
             A    P + A    KKF IYRW+PD P  KP ++ +E++L ECG MVLDALIKIK+E+DP
Sbjct:    30 AAAAAPASQAEARIKKFAIYRWDPDKPGDKPRMQTYEVDLNECGSMVLDALIKIKNEMDP 89

Query:    93 SLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGS-ASTITPLPHMFVIKDLVVDMTN 151
             +LTFRRSCREGICGSCAMNI+G N LAC  +I  + S  S I PLPHM+V+KDLV D++N
Sbjct:    90 TLTFRRSCREGICGSCAMNINGGNTLACTVRIDTNLSKVSKIYPLPHMYVVKDLVPDLSN 149

Query:   152 FYNQYKSIEPWLKRKNPPPMPGKE-IPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSE 210
             FY QYKSIEP+LK+K+     GKE   QS +DR KLDG+YECILCACCSTSCPSYWW ++
Sbjct:   150 FYAQYKSIEPYLKKKDES-QEGKEQYLQSIEDRDKLDGLYECILCACCSTSCPSYWWNAD 208

Query:   211 AYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQII 270
              YLGPA L+ A RW+ DSRD+YT+ERL  + D F LYRCHTI+NC R CPKGLNPGK I 
Sbjct:   209 KYLGPAVLMQAYRWMIDSRDDYTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIA 268

Query:   271 NIKQL 275
              IK++
Sbjct:   269 EIKKM 273

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005749 "mitochondrial respiratory chain complex II" evidence=ISS

GO:0048039 "ubiquinone binding" evidence=ISS

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=ISS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISS

ZFIN|ZDB-GENE-030131-8005 sdhb "succinate dehydrogenase complex, subunit B, iron sulfur (Ip)" [Danio rerio (taxid:7955)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 160/264 (60%), Positives = 198/264 (75%)

Query:    16 VAQPARLLTARFHASEAEAQKVEPKASANTDTKKFQIYRWNPDSPS-KPELKEFEINLKE 74
             V +PA +   RF A  A A   +P+       KKFQIYRW+PD+   KP ++ +EI+L  
Sbjct:    15 VHRPA-VTAVRF-AQTAAAPAAQPRI------KKFQIYRWDPDTVGDKPRMQTYEIDLNT 66

Query:    75 CGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSAST-I 133
             CGPMVLDALIKIK+E+D +LTFRRSCREGICGSCAMNI+G N LACL KI  + S  T I
Sbjct:    67 CGPMVLDALIKIKNEMDSTLTFRRSCREGICGSCAMNINGGNTLACLNKIDTNTSKVTKI 126

Query:   134 TPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECI 193
              PLPHM+V+KDLV DM+NFY QYKSIEP+LK+K+      ++  QS +DR KLDG+YECI
Sbjct:   127 YPLPHMYVVKDLVPDMSNFYAQYKSIEPYLKKKDESQQGKQQYLQSVEDRQKLDGLYECI 186

Query:   194 LCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL 253
             LCACCSTSCPSYWW ++ YLGPA L+ A RW+ DSRD++T++RL  + D F LYRCHTI+
Sbjct:   187 LCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTEDRLSKLQDPFSLYRCHTIM 246

Query:   254 NCARACPKGLNPGKQIINIKQLQL 277
             NC R CPKGLNPGK I  IK++ +
Sbjct:   247 NCTRTCPKGLNPGKAIAEIKKMMV 270

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA;ISS

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0008177 "succinate dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISS

GO:0048039 "ubiquinone binding" evidence=ISS

GO:0005749 "mitochondrial respiratory chain complex II" evidence=ISS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA;ISS

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006810 "transport" evidence=IEA

POMBASE|SPAC140.01 sdh2 "succinate dehydrogenase (ubiquinone) iron-sulfur protein subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 156/254 (61%), Positives = 188/254 (74%)

Query:    25 ARFHASEAE--AQKVEPKASANTDTKKFQIYRWNPDSPS-KPELKEFEINLKECGPMVLD 81
             AR  A+EA   A    P+ S   + K F+IYRWNP+ P  KP+L+++ ++L +CGPMVLD
Sbjct:    21 ARMMATEANISATSANPQ-SQGENLKTFEIYRWNPEKPEVKPKLQKYTVDLTKCGPMVLD 79

Query:    82 ALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFV 141
             ALIKIK+E DP+LTFRRSCREGICGSCAMNI+G N LAC+  I      + I PLPH F+
Sbjct:    80 ALIKIKNEQDPTLTFRRSCREGICGSCAMNINGSNTLACICNIKKDNKPTKIYPLPHCFI 139

Query:   142 IKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTS 201
             +KDLV D+T FY QYKSIEPWL+  N P    KE  QS+ DRAKLDG+YECILCACCSTS
Sbjct:   140 VKDLVPDLTYFYKQYKSIEPWLQNDNIPK--DKEFYQSRADRAKLDGLYECILCACCSTS 197

Query:   202 CPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK 261
             CPSYWW SE YLGPA L+ A RWI DSRD+ T +RL+ + +   +YRCHTI+NCAR CPK
Sbjct:   198 CPSYWWNSEEYLGPAVLMQAYRWIIDSRDQATAKRLDVMQNSMSVYRCHTIMNCARTCPK 257

Query:   262 GLNPGKQIINIKQL 275
             GLNPG  I  +K L
Sbjct:   258 GLNPGLAIAKVKAL 271

GO:0005737 "cytoplasm" evidence=IDA

GO:0005749 "mitochondrial respiratory chain complex II" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0006105 "succinate metabolic process" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0008177 "succinate dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

TAIR|locus:504954878 SDH2-3 "succinate dehydrogenase 2-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 155/233 (66%), Positives = 181/233 (77%)

Query:    48 KKFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICG 106
             K+F+IYRWNPD P SKP L+ F ++L  CGPMVLD L KIK+E D SL++RRSCREGICG
Sbjct:    67 KEFKIYRWNPDKPNSKPFLQSFFVDLSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICG 126

Query:   107 SCAMNIDGCNGLACLTKISPSGSASTI-TPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 165
             SC+MNIDG N +ACL  I+P+ S  TI TPLPHM+VIKDLVVD+TNFY QYKS+EPWLK 
Sbjct:   127 SCSMNIDGTNTVACLKPINPNTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKT 186

Query:   166 KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWI 225
             + PP   G+E  QS KDR KLDG+YECILCACC+TSCPSYWW  E + GPAALL A RWI
Sbjct:   187 RKPPK-DGREHRQSPKDRKKLDGLYECILCACCTTSCPSYWWNPEEFPGPAALLQAYRWI 245

Query:   226 SDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQL 277
             SDSRDEY +ERL+AI + E K+YRC  I NC   CPKGLNP   I+ +K   L
Sbjct:   246 SDSRDEYREERLQAITESETKVYRCRAIKNCTATCPKGLNPASAILKMKSKHL 298

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000104 "succinate dehydrogenase activity" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0045281 "succinate dehydrogenase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P21801	DHSB_YEAST	1, ., 3, ., 5, ., 1	0.6375	0.8100	0.8496	yes	no
Q8LB02	DHSB2_ARATH	1, ., 3, ., 5, ., 1	0.7833	0.9892	0.9857	yes	no
Q9CQA3	DHSB_MOUSE	1, ., 3, ., 5, ., 1	0.6347	0.8172	0.8085	yes	no
Q70KF8	DHSB_UROFA	1, ., 3, ., 5, ., 1	0.6411	0.8709	0.8586	N/A	no
P07014	DHSB_ECOLI	1, ., 3, ., 9, 9, ., 1	0.5191	0.8207	0.9621	N/A	no
P44893	FRDB_HAEIN	1, ., 3, ., 9, 9, ., 1	0.3037	0.8064	0.8789	yes	no
Q1RGP3	DHSB_RICBR	1, ., 3, ., 9, 9, ., 1	0.6296	0.8637	0.9233	yes	no
Q55CC2	DHSB_DICDI	1, ., 3, ., 5, ., 1	0.5316	0.9820	0.9547	yes	no
Q68XS0	DHSB_RICTY	1, ., 3, ., 9, 9, ., 1	0.5862	0.9032	0.9655	yes	no
P48932	DHSB_CHOCR	1, ., 3, ., 5, ., 1	0.5732	0.8494	0.948	N/A	no
P48933	DHSB_CYACA	1, ., 3, ., 5, ., 1	0.5869	0.8207	0.8740	N/A	no
Q3T189	DHSB_BOVIN	1, ., 3, ., 5, ., 1	0.5938	0.9068	0.9035	yes	no
A5PL98	DHSB_DANRE	1, ., 3, ., 5, ., 1	0.6508	0.8243	0.8214	yes	no
O06914	FRDB_HELPY	1, ., 3, ., 9, 9, ., 1	0.3387	0.8279	0.9428	yes	no
Q10761	FRDB_MYCTU	1, ., 3, ., 9, 9, ., 1	0.3434	0.8064	0.9109	yes	no
Q3B8J8	DHSB_XENLA	1, ., 3, ., 5, ., 1	0.5799	0.9569	0.9468	N/A	no
Q007T0	DHSB_PIG	1, ., 3, ., 5, ., 1	0.6391	0.8172	0.8142	yes	no
P32420	DHSB_USTMA	1, ., 3, ., 5, ., 1	0.5629	0.9426	0.8915	N/A	no
P80477	DHSB_PORPU	1, ., 3, ., 5, ., 1	0.5800	0.8172	0.9539	N/A	no
Q59662	DHSB_PARDE	1, ., 3, ., 9, 9, ., 1	0.584	0.8888	0.9575	yes	no
Q8LBZ7	DHSB1_ARATH	1, ., 3, ., 5, ., 1	0.7805	0.9892	0.9892	no	no
Q09545	DHSB_CAEEL	1, ., 3, ., 5, ., 1	0.6086	0.8172	0.7651	yes	no
Q9ZMP1	FRDB_HELPJ	1, ., 3, ., 9, 9, ., 1	0.3306	0.8279	0.9428	yes	no
A8WPF0	DHSB_CAEBR	1, ., 3, ., 5, ., 1	0.5958	0.8494	0.8404	N/A	no
P21911	DHSB_SCHPO	1, ., 3, ., 5, ., 1	0.6117	0.8924	0.9054	yes	no
P21913	DHSB_RAT	1, ., 3, ., 5, ., 1	0.6391	0.8172	0.8085	yes	no
P21912	DHSB_HUMAN	1, ., 3, ., 5, ., 1	0.6347	0.8172	0.8142	yes	no
P21914	DHSB_DROME	1, ., 3, ., 5, ., 1	0.6326	0.8637	0.8114	yes	no
Q92JJ8	DHSB_RICCN	1, ., 3, ., 9, 9, ., 1	0.6465	0.8279	0.8850	yes	no
Q4UN71	DHSB_RICFE	1, ., 3, ., 9, 9, ., 1	0.6336	0.8279	0.8850	yes	no
Q75CI4	DHSB_ASHGO	1, ., 3, ., 5, ., 1	0.6336	0.8207	0.8773	yes	no
Q8ZQU2	DHSB_SALTY	1, ., 3, ., 9, 9, ., 1	0.5234	0.8207	0.9621	yes	no
B0BM36	DHSB_XENTR	1, ., 3, ., 5, ., 1	0.6521	0.8172	0.8028	yes	no
Q9YHT2	DHSB_CHICK	1, ., 3, ., 5, ., 1	0.6	0.9211	0.8862	yes	no
P51053	DHSB_COXBU	1, ., 3, ., 9, 9, ., 1	0.4869	0.8100	0.9617	yes	no
Q9ZEA1	DHSB_RICPR	1, ., 3, ., 9, 9, ., 1	0.6379	0.8279	0.8850	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.5.1	0.979
3rd Layer	1.3.5	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
PLN00129	276	PLN00129, PLN00129, succinate dehydrogenase [ubiqu	1e-180
PRK05950	232	PRK05950, sdhB, succinate dehydrogenase iron-sulfu	1e-146
COG0479	234	COG0479, FrdB, Succinate dehydrogenase/fumarate re	1e-105
TIGR00384	220	TIGR00384, dhsB, succinate dehydrogenase and fumar	1e-97
PRK12575	235	PRK12575, PRK12575, succinate dehydrogenase iron-s	4e-92
PRK12577	329	PRK12577, PRK12577, succinate dehydrogenase iron-s	3e-54
PRK12576	279	PRK12576, PRK12576, succinate dehydrogenase iron-s	7e-49
pfam13085	107	pfam13085, Fer2_3, 2Fe-2S iron-sulfur cluster bind	3e-47
PRK12385	244	PRK12385, PRK12385, fumarate reductase iron-sulfur	2e-42
PRK06259	486	PRK06259, PRK06259, succinate dehydrogenase/fumara	1e-38
PRK13552	239	PRK13552, frdB, fumarate reductase iron-sulfur sub	3e-37
PRK08640	249	PRK08640, sdhB, succinate dehydrogenase iron-sulfu	1e-19
PRK12386	251	PRK12386, PRK12386, fumarate reductase iron-sulfur	5e-17
pfam13534	61	pfam13534, Fer4_17, 4Fe-4S dicluster domain	2e-06
PRK07570	250	PRK07570, PRK07570, succinate dehydrogenase/fumara	2e-05
COG0247	388	COG0247, GlpC, Fe-S oxidoreductase [Energy product	1e-04
pfam13183	54	pfam13183, Fer4_8, 4Fe-4S dicluster domain	0.002

>gnl|CDD|215067 PLN00129, PLN00129, succinate dehydrogenase [ubiquinone] iron-sulfur subunit

 Score =  497 bits (1281), Expect = e-180
 Identities = 195/280 (69%), Positives = 216/280 (77%), Gaps = 5/280 (1%)

Query: 1   MATGLIRRAISSSAAVAQPARLLTARFHASEAEAQKVEPKASANTDTKKFQIYRWNPDSP 60
           MA GL+RR   + A +  PA    A   A+ +   K   K S  ++ K+FQIYRWNPD+P
Sbjct: 1   MAAGLLRRLAGAKAGLLAPA----AAASAAASAETKASSKGSKPSNLKEFQIYRWNPDNP 56

Query: 61  SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLAC 120
            KP L+ ++++L +CGPMVLD LIKIK+E DPSLTFRRSCREGICGSCAMNIDG N LAC
Sbjct: 57  GKPHLQSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNIDGKNTLAC 116

Query: 121 LTKISP-SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQS 179
           LTKI       +TITPLPHMFVIKDLVVDMTNFY QYKSIEPWLK K PP    KE  QS
Sbjct: 117 LTKIDRDESGPTTITPLPHMFVIKDLVVDMTNFYQQYKSIEPWLKTKKPPEDGQKEHLQS 176

Query: 180 KKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEA 239
           K+DRAKLDGMYECILCACCSTSCPSYWW  E +LGPAALLHA RWISDSRDEYTKERLEA
Sbjct: 177 KEDRAKLDGMYECILCACCSTSCPSYWWNPEKFLGPAALLHAYRWISDSRDEYTKERLEA 236

Query: 240 IDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279
           +DDEFKLYRCHTI NC+ ACPKGLNP K I  IKQL    
Sbjct: 237 LDDEFKLYRCHTIRNCSNACPKGLNPAKAIAKIKQLLGLG 276

Length = 276

>gnl|CDD|235652 PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed

 Score =  408 bits (1052), Expect = e-146
 Identities = 146/232 (62%), Positives = 180/232 (77%), Gaps = 3/232 (1%)

Query: 49  KFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSC 108
            F+IYR+NPD  + P ++ +E+++ ECGPMVLDALIKIK+EIDP+LTFRRSCREG+CGS 
Sbjct: 1   TFKIYRYNPDVDANPRMQTYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSD 60

Query: 109 AMNIDGCNGLACLTKISP-SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKN 167
           AMNI+G NGLAC+T IS        I PLP + VIKDLVVDMT FY QY+SI+P+L    
Sbjct: 61  AMNINGKNGLACITPISDLKKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLINDT 120

Query: 168 PPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISD 227
           PPP   +E  QS +DR KLDG+YECILCACCSTSCPS+WW  + +LGPAALL A R+I+D
Sbjct: 121 PPP--ARERLQSPEDREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFIAD 178

Query: 228 SRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279
           SRDE T ERL+ +DD F ++RCHTI+NC   CPKGLNP K I  IK++ L+R
Sbjct: 179 SRDEATGERLDILDDPFGVFRCHTIMNCVEVCPKGLNPTKAIGEIKRMLLER 230

Length = 232

>gnl|CDD|223555 COG0479, FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]

 Score =  305 bits (784), Expect = e-105
 Identities = 119/235 (50%), Positives = 157/235 (66%), Gaps = 6/235 (2%)

Query: 46  DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGIC 105
            T KF+IYR+NPD   KP  + +E+   + G  VLDAL+ IK E DP+L+FRRSCREGIC
Sbjct: 1   MTLKFKIYRYNPDD-DKPYWQTYEVPY-DEGMTVLDALLYIKEEQDPTLSFRRSCREGIC 58

Query: 106 GSCAMNIDGCNGLACLTKISP-SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 164
           GSCAMNI+G   LAC T +        TI PLP+  VI+DLVVDM  FY + + I+P+L 
Sbjct: 59  GSCAMNINGKPRLACKTLMKDLEEGVITIEPLPNFPVIRDLVVDMEEFYEKLRKIKPYLI 118

Query: 165 RKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRW 224
           R + P  PG+ + QS ++R KLD + ECILC CC+ +CPS WW  + +LGPAAL  A R+
Sbjct: 119 RDDEPD-PGERL-QSPEEREKLDELSECILCGCCTAACPSIWWNPD-FLGPAALRQAYRF 175

Query: 225 ISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279
           ++DSRDE T ERL+ ++D   ++RC T  NC   CPKG+ P K I  +K+   KR
Sbjct: 176 LADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKGIPPAKAIAELKRRLAKR 230

Length = 234

>gnl|CDD|232950 TIGR00384, dhsB, succinate dehydrogenase and fumarate reductase iron-sulfur protein

 Score =  285 bits (730), Expect = 1e-97
 Identities = 114/223 (51%), Positives = 150/223 (67%), Gaps = 4/223 (1%)

Query: 52  IYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMN 111
           + R+NPD   KP L+ +E+   E    VLDAL  IK E DPSL FRRSCR GICGSCAMN
Sbjct: 1   VLRFNPDVDEKPHLQSYEVPADEGM-TVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMN 59

Query: 112 IDGCNGLACLTKISPSGSAS-TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPP 170
           ++G   LAC TK+   G     I PLP++ VIKDLVVDM  FY + ++I+P+L RK+ P 
Sbjct: 60  VNGKPVLACKTKVEDLGQPVMKIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLIRKSQPE 119

Query: 171 MPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRD 230
            P  E  Q+ + R KLD +  CILC CC +SCP++WW  E +LGPAAL  A R++ DSRD
Sbjct: 120 -PEGEFLQTPEQREKLDQLSGCILCGCCYSSCPAFWWNPE-FLGPAALTAAYRFLIDSRD 177

Query: 231 EYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIK 273
             TK+RLE ++D+  ++RC T +NC+  CPKG+NP + I  +K
Sbjct: 178 HATKDRLEGLNDKNGVWRCTTCMNCSEVCPKGVNPARAIEKLK 220

Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase [Energy metabolism, Aerobic, Energy metabolism, Anaerobic, Energy metabolism, TCA cycle]. Length = 220

>gnl|CDD|171592 PRK12575, PRK12575, succinate dehydrogenase iron-sulfur subunit; Provisional

 Score =  272 bits (696), Expect = 4e-92
 Identities = 116/234 (49%), Positives = 166/234 (70%), Gaps = 3/234 (1%)

Query: 46  DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGIC 105
           DT+   IYR++PD  + P ++ +EI  +    M+LD L ++K++ D +L++RRSCREGIC
Sbjct: 3   DTRILHIYRYDPDDDAAPRMQRYEIAPRAEDRMLLDVLGRVKAQ-DETLSYRRSCREGIC 61

Query: 106 GSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 165
           GS AMNI+G NGLACLT +        + PLP + V++DL+VDMT+F+NQY SI P+L  
Sbjct: 62  GSDAMNINGRNGLACLTNMQALPREIVLRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLIN 121

Query: 166 KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWI 225
              PP   +E  Q+ ++R +LDG+YECILCACCST+CPSYWW  + ++GPA LL A R+I
Sbjct: 122 DTVPPE--RERLQTPQEREQLDGLYECILCACCSTACPSYWWNPDKFVGPAGLLQAYRFI 179

Query: 226 SDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279
           +DSRD+ T  RL+ ++D ++L+RC TI+NC   CPKGLNP + I  I+ +  +R
Sbjct: 180 ADSRDDATAARLDDLEDPYRLFRCRTIMNCVDVCPKGLNPARAIGQIRTMLARR 233

Length = 235

>gnl|CDD|183605 PRK12577, PRK12577, succinate dehydrogenase iron-sulfur subunit; Provisional

 Score =  178 bits (453), Expect = 3e-54
 Identities = 92/242 (38%), Positives = 135/242 (55%), Gaps = 17/242 (7%)

Query: 50  FQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCA 109
           F+I R   +S   P ++ + + + E G  +LD L +IK E D SL FR++CR  ICGSCA
Sbjct: 5   FKILRQKQNSA--PYVQTYTLEV-EPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCA 61

Query: 110 MNIDGCNGLAC-------LTKISPSGSAS----TITPLPHMFVIKDLVVDMTNFYNQYKS 158
           M I+G + LAC       L ++S S S +    TI PL +M VIKDLVVDM++F+   ++
Sbjct: 62  MRINGRSALACKENVGSELARLSDSNSGAIPEITIAPLGNMPVIKDLVVDMSSFWQNLEA 121

Query: 159 IEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAAL 218
           ++P++        P +E  Q+ ++R+KLD    CILC  C + C +     E ++GP AL
Sbjct: 122 VDPYVSTAARQV-PEREFLQTPEERSKLDQTGNCILCGACYSECNAREVNPE-FVGPHAL 179

Query: 219 LHANRWISDSRDEYTKERLEAID-DEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQL 277
             A R ++DSRD  T++RLE  +     ++ C     C   CP  + P  QI  IKQ  L
Sbjct: 180 AKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPMEVAPLDQITKIKQEIL 239

Query: 278 KR 279
            R
Sbjct: 240 AR 241

Length = 329

>gnl|CDD|237143 PRK12576, PRK12576, succinate dehydrogenase iron-sulfur subunit; Provisional

 Score =  162 bits (413), Expect = 7e-49
 Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 10/225 (4%)

Query: 49  KFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSC 108
            F++ R++P+  S    +E+++ +      V +AL +IK E DP+L++R SC   +CGSC
Sbjct: 10  IFKVKRYDPEKGS--WWQEYKVKVDR-FTQVTEALRRIKEEQDPTLSYRASCHMAVCGSC 66

Query: 109 AMNIDGCNGLACLTK----ISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 164
            M I+G   LAC T          S  TI P+ +  V+KDL+VD   FY +   ++P L 
Sbjct: 67  GMKINGEPRLACKTLVLDVAKKYNSVITIEPMDYFKVVKDLIVDFDEFYERMFKVKPRLY 126

Query: 165 RKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRW 224
           R         E     +D+ +L    +CI C  C ++CP        +LGPAA     R+
Sbjct: 127 RAKEVLEGKAEHRLKPEDQKELWKFAQCIWCGLCVSACPVV-AIDPEFLGPAAHAKGYRF 185

Query: 225 ISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQI 269
           ++D RD  T+ER++ + D    +RC    +C+  CP+ + P   I
Sbjct: 186 LADPRDTITEERMKILID--SSWRCTYCYSCSNVCPRDIEPVTAI 228

Length = 279

>gnl|CDD|221911 pfam13085, Fer2_3, 2Fe-2S iron-sulfur cluster binding domain

 Score =  152 bits (387), Expect = 3e-47
 Identities = 53/108 (49%), Positives = 68/108 (62%), Gaps = 3/108 (2%)

Query: 49  KFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSC 108
             +I+R++P   ++P  +E+E+   E G  VLDAL  IK E DP+L FR SCREG+CGSC
Sbjct: 1   TLRIFRYDPPRDAEPYYQEYEVEY-EEGMTVLDALNYIKEEQDPTLAFRASCREGVCGSC 59

Query: 109 AMNIDGCNGLACLTKIS--PSGSASTITPLPHMFVIKDLVVDMTNFYN 154
           AM I+G   LAC T I     G   TI PLP   VI+DLVVD + F+ 
Sbjct: 60  AMRINGKPRLACKTLIDDLLKGEEITIEPLPGFPVIRDLVVDRSPFFE 107

The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which abeta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. Length = 107

>gnl|CDD|183490 PRK12385, PRK12385, fumarate reductase iron-sulfur subunit; Provisional

 Score =  145 bits (367), Expect = 2e-42
 Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 3/228 (1%)

Query: 42  SANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR 101
            A     K ++ R+NP+  ++P  + +E+   E    +LDAL  IK  + P L++R SCR
Sbjct: 1   MAEMKNLKIEVLRYNPEVDTEPHSQTYEVPYDE-TTSLLDALGYIKDNLAPDLSYRWSCR 59

Query: 102 EGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEP 161
             ICGSC M ++    LAC T +        +  L +  + +DLVVDMT+F    ++I+P
Sbjct: 60  MAICGSCGMMVNNVPKLACKTFLRDYTGGMKVEALANFPIERDLVVDMTHFIESLEAIKP 119

Query: 162 WLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHA 221
           ++   +  P  G    Q+    AK      CI C  C  +CP +    E ++GPAA+  A
Sbjct: 120 YIIGNDRTPDDGPNK-QTPAQMAKYHQFSGCINCGLCYAACPQFGLNPE-FIGPAAITLA 177

Query: 222 NRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQI 269
           +R+  DSRD   KER++ ++ +  ++ C  +  C+  CPK ++P   I
Sbjct: 178 HRYNLDSRDHGKKERMKQLNGQNGVWSCTFVGYCSEVCPKHVDPAAAI 225

Length = 244

>gnl|CDD|235756 PRK06259, PRK06259, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional

 Score =  140 bits (356), Expect = 1e-38
 Identities = 82/222 (36%), Positives = 115/222 (51%), Gaps = 19/222 (8%)

Query: 49  KFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSC 108
              + R++P+   +P  + +E+ +KE G  VLDAL  I    D ++ FR SCR G CGSC
Sbjct: 5   TITVKRFDPEK-DEPHFESYEVPVKE-GMTVLDALEYINKTYDANIAFRSSCRAGQCGSC 62

Query: 109 AMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNP 168
           A+ I+G   LAC T++        I PL    VIKDL+VD   +Y + KS+  +L+RKN 
Sbjct: 63  AVTINGEPVLACKTEVEDG---MIIEPL-DFPVIKDLIVDREPYYKKLKSLRNYLQRKNE 118

Query: 169 PPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDS 228
                ++I   KK R        CI C  C ++CP+       Y GP  +    R+  D 
Sbjct: 119 KITYPEDIEDIKKLR-------GCIECLSCVSTCPAR--KVSDYPGPTFMRQLARFAFDP 169

Query: 229 RDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN-PGKQI 269
           RDE  +E+ EA D+   LY C T   C   CPK ++ PGK I
Sbjct: 170 RDEGDREK-EAFDE--GLYNCTTCGKCVEVCPKEIDIPGKAI 208

Length = 486

>gnl|CDD|184136 PRK13552, frdB, fumarate reductase iron-sulfur subunit; Provisional

 Score =  131 bits (332), Expect = 3e-37
 Identities = 80/230 (34%), Positives = 115/230 (50%), Gaps = 16/230 (6%)

Query: 49  KFQIYRWNPDSP-SKPELKEFEINLKECGPMVL-DALIKIKSEIDPSLTFRRSCREGICG 106
            F I+R+NP  P SKP +  ++  L+E   M L  AL +I+ E DPSL F   CR GICG
Sbjct: 6   TFNIFRYNPQDPGSKPHMVTYQ--LEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICG 63

Query: 107 SCAMNIDGCNGLACLTKIS--PSGSASTITPLPHMFVIKDLVVDMTNFYNQ-YKSIEPWL 163
           SCAM I+G   LAC T  S  P G   T+ PLP   +I DL V+   ++ +  + +E W+
Sbjct: 64  SCAMVINGRPTLACRTLTSDYPDGVI-TLMPLPVFKLIGDLSVNTGKWFREMSERVESWI 122

Query: 164 KRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTS---EAYLGPAALLH 220
                  +   E     ++  ++  +  CI C CC  +C     T    E ++G   L  
Sbjct: 123 HTDKEFDIHRLEERMEPEEADEIYELDRCIECGCCVAACG----TKQMREDFVGAVGLNR 178

Query: 221 ANRWISDSRDEYTKERL-EAIDDEFKLYRCHTILNCARACPKGLNPGKQI 269
             R+  D RDE T E   E I ++  ++ C ++L C   CPK L   +QI
Sbjct: 179 IARFELDPRDERTDEDFYELIGNDDGVFGCMSLLGCEDNCPKDLPLQQQI 228

Length = 239

>gnl|CDD|181515 PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed

 Score = 85.0 bits (211), Expect = 1e-19
 Identities = 68/242 (28%), Positives = 108/242 (44%), Gaps = 46/242 (19%)

Query: 47  TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKI-------KSEIDPSLTFRRS 99
           T +  I R +    SKP  +EFEI  +     V+ AL++I       K E    + +  +
Sbjct: 5   TVRLIIKRQD-GPDSKPYWEEFEIPYRP-NMNVISALMEIRRNPVNAKGEKTTPVVWDMN 62

Query: 100 CREGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSI 159
           C E +CG+C+M I+G    AC   I        + P+    V++DL VD +  ++  K +
Sbjct: 63  CLEEVCGACSMVINGKPRQACTALIDQLEQPIRLEPMSTFPVVRDLQVDRSRMFDNLKRV 122

Query: 160 EPWLKRKNPPPM-------PGKEIPQSKKDRAKLDGMYE---CILCACCSTSCPSYWWTS 209
           + W+      P+       PG  +P+ K+        YE   C+ C CC  +CP+    S
Sbjct: 123 KAWI------PIDGTYDLGPGPRMPEEKRQW-----AYELSKCMTCGCCLEACPNVNEKS 171

Query: 210 EAYLGPAALLHANRWISDSR--------DEYTKERLEAIDDEFKLYRCHTILNCARACPK 261
             ++GPAA       IS  R        + + +ERL A+  +  +  C    NC R CPK
Sbjct: 172 -DFIGPAA-------ISQVRLFNAHPTGEMHKEERLRALMGDGGIADCGNAQNCVRVCPK 223

Query: 262 GL 263
           G+
Sbjct: 224 GI 225

Length = 249

>gnl|CDD|237086 PRK12386, PRK12386, fumarate reductase iron-sulfur subunit; Provisional

 Score = 78.2 bits (193), Expect = 5e-17
 Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 18/224 (8%)

Query: 47  TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICG 106
           T KF+++R +       EL+++ + + E G +VLD + ++++   P L  R +C+ G CG
Sbjct: 4   TAKFRVWRGDASGG---ELQDYTVEVNE-GEVVLDVIHRLQATQAPDLAVRWNCKAGKCG 59

Query: 107 SCAMNIDGCNGLACLTKISPSGSASTIT--PLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 164
           SC+  I+G   L C+T++S      T+T  P+    VI+DLV D++  Y + + I  +  
Sbjct: 60  SCSAEINGRPRLMCMTRMSTFDEDETVTVTPMRTFPVIRDLVTDVSFNYEKAREIPSF-- 117

Query: 165 RKNPPP--MPGKEIPQSKKDRAKLDGMYECILCACCSTSC---PSYWWTSEAYLGPAALL 219
              PP    PG+   Q + D  +     +CI C  C   C     +     A+ GP  L+
Sbjct: 118 --TPPKDLQPGEYRMQ-QVDVERSQEFRKCIECFLCQNVCHVVRDHEENKPAFAGPRFLM 174

Query: 220 HANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263
                     D  T +R     +E  L  C+    C   CP+ +
Sbjct: 175 RIAELEMHPLD--TADRRAEAQEEHGLGYCNITKCCTEVCPEHI 216

Length = 251

>gnl|CDD|222205 pfam13534, Fer4_17, 4Fe-4S dicluster domain

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 15/74 (20%), Positives = 19/74 (25%), Gaps = 13/74 (17%)

Query: 191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCH 250
            CI C  C   CPSY    +         +         +E                 C 
Sbjct: 1   RCIQCGYCVPVCPSYLLNGDEPKKLMRAAYNGDLEELLANE-------------AADSCS 47

Query: 251 TILNCARACPKGLN 264
               C   CP GL+
Sbjct: 48  ECGLCEYVCPMGLD 61

This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich. Length = 61

>gnl|CDD|181038 PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 55/189 (29%), Positives = 72/189 (38%), Gaps = 41/189 (21%)

Query: 100 CREGICGSCAMNIDGC------NGLACLTKIS--PSGSASTITP-----LPHMFVIKDLV 146
           CREGICG C + I+G           C   +     G   TI P      P   VIKDLV
Sbjct: 58  CREGICGMCGLVINGRPHGPDRGTTTCQLHMRSFKDGDTITIEPWRAAAFP---VIKDLV 114

Query: 147 VDMTNF-----YNQYKSIEPWLKRKNPPPMPGKEIPQSKK--DRAKLDGMYECILCACCS 199
           VD +          Y S+          P     IP  K+  DRA  D    CI C  C 
Sbjct: 115 VDRSALDRIIQAGGYVSV-----NTGGAP-DANAIPVPKEDADRA-FDAA-ACIGCGACV 166

Query: 200 TSCP---SYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDE-FKLYRCHTILNC 255
            +CP   +  +T  A +   ALL   +     R    +  +  +D+E F    C     C
Sbjct: 167 AACPNGSAMLFTG-AKVSHLALLPQGQ---PERARRVRAMVAQMDEEGFG--NCTNTGEC 220

Query: 256 ARACPKGLN 264
              CPKG++
Sbjct: 221 EAVCPKGIS 229

Length = 250

>gnl|CDD|223325 COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFK 245
            + + +C+ C  C+  CPSY          A    + R       E  + +    ++ ++
Sbjct: 5   FESLDKCVHCGFCTNVCPSY---------RATEALSPRGRIVLVREVLRGKAPGDEEVYE 55

Query: 246 -LYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279
            L  C     CA ACP G++ G  I   ++   K 
Sbjct: 56  ALDTCLACGACATACPSGIDIGDLIREARRKLAKG 90

Length = 388

>gnl|CDD|221963 pfam13183, Fer4_8, 4Fe-4S dicluster domain

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 22/76 (28%)

Query: 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLY 247
            + +CI C  C   CP Y                              R  A+  E  L+
Sbjct: 1   ELSKCIRCGACRAVCPVY--------------------RALGRFSGDPRGGALAAE--LW 38

Query: 248 RCHTILNCARACPKGL 263
            C +   C   CP G+
Sbjct: 39  SCTSCGACTEVCPVGI 54

Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
KOG3049	288	consensus Succinate dehydrogenase, Fe-S protein su	100.0
PLN00129	276	succinate dehydrogenase [ubiquinone] iron-sulfur s	100.0
COG0479	234	FrdB Succinate dehydrogenase/fumarate reductase, F	100.0
PRK12575	235	succinate dehydrogenase iron-sulfur subunit; Provi	100.0
PRK13552	239	frdB fumarate reductase iron-sulfur subunit; Provi	100.0
PRK08640	249	sdhB succinate dehydrogenase iron-sulfur subunit;	100.0
PRK12385	244	fumarate reductase iron-sulfur subunit; Provisiona	100.0
PRK12386	251	fumarate reductase iron-sulfur subunit; Provisiona	100.0
PRK12577	329	succinate dehydrogenase iron-sulfur subunit; Provi	100.0
PRK05950	232	sdhB succinate dehydrogenase iron-sulfur subunit;	100.0
PRK12576	279	succinate dehydrogenase iron-sulfur subunit; Provi	100.0
TIGR00384	220	dhsB succinate dehydrogenase and fumarate reductas	100.0
PRK07570	250	succinate dehydrogenase/fumarate reductase iron-su	100.0
PRK06259	486	succinate dehydrogenase/fumarate reductase iron-su	100.0
PF13085	110	Fer2_3: 2Fe-2S iron-sulfur cluster binding domain;	100.0
COG3383	978	Uncharacterized anaerobic dehydrogenase [General f	99.84
PRK08493	819	NADH dehydrogenase subunit G; Validated	99.83
PTZ00305	297	NADH:ubiquinone oxidoreductase; Provisional	99.83
PRK09130	687	NADH dehydrogenase subunit G; Validated	99.79
COG1034	693	NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc	99.78
TIGR01973	603	NuoG NADH-quinone oxidoreductase, chain G. This mo	99.77
PRK07860	797	NADH dehydrogenase subunit G; Validated	99.75
PRK07569	234	bidirectional hydrogenase complex protein HoxU; Va	99.74
PRK09129	776	NADH dehydrogenase subunit G; Validated	99.74
PRK08166	847	NADH dehydrogenase subunit G; Validated	99.66
PRK11274	407	glcF glycolate oxidase iron-sulfur subunit; Provis	99.43
COG1150	195	HdrC Heterodisulfide reductase, subunit C [Energy	99.33
TIGR03290	144	CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, s	99.28
COG1139	459	Uncharacterized conserved protein containing a fer	99.2
TIGR00273	432	iron-sulfur cluster-binding protein. Members of th	99.19
TIGR03193	148	4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamm	99.18
PRK11433	217	aldehyde oxidoreductase 2Fe-2S subunit; Provisiona	99.16
PF13510	82	Fer2_4: 2Fe-2S iron-sulfur cluster binding domain;	99.15
PRK11168	396	glpC sn-glycerol-3-phosphate dehydrogenase subunit	99.15
PRK09908	159	xanthine dehydrogenase subunit XdhC; Provisional	99.12
COG2080	156	CoxS Aerobic-type carbon monoxide dehydrogenase, s	99.05
TIGR03379	397	glycerol3P_GlpC glycerol-3-phosphate dehydrogenase	99.03
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.95
COG0247	388	GlpC Fe-S oxidoreductase [Energy production and co	98.93
TIGR03198	151	pucE xanthine dehydrogenase E subunit. This gene h	98.92
PF13183	57	Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_	98.92
PF13534	61	Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9	98.87
PRK15055	344	anaerobic sulfite reductase subunit A; Provisional	98.72
KOG2282	708	consensus NADH-ubiquinone oxidoreductase, NDUFS1/7	98.59
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	98.57
PRK09800	956	putative hypoxanthine oxidase; Provisional	98.52
TIGR03313	951	Se_sel_red_Mo probable selenate reductase, molybde	98.5
cd00207	84	fer2 2Fe-2S iron-sulfur cluster binding domain. Ir	98.48
PRK00941	781	acetyl-CoA decarbonylase/synthase complex subunit	98.47
TIGR02910	334	sulfite_red_A sulfite reductase, subunit A. Member	98.44
PRK05035	695	electron transport complex protein RnfC; Provision	98.41
cd01916	731	ACS_1 Acetyl-CoA synthase (ACS), also known as ace	98.41
TIGR02963	467	xanthine_xdhA xanthine dehydrogenase, small subuni	98.38
TIGR00314	784	cdhA CO dehydrogenase/acetyl-CoA synthase complex,	98.38
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	98.34
TIGR03311	848	Se_dep_Molyb_1 selenium-dependent molybdenum hydro	98.33
PF00111	78	Fer2: 2Fe-2S iron-sulfur cluster binding domain; I	98.29
COG1143	172	NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino	98.26
CHL00134	99	petF ferredoxin; Validated	98.23
TIGR02008	97	fdx_plant ferredoxin [2Fe-2S]. This model represen	98.2
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	98.19
TIGR02484	372	CitB CitB domain protein. CobZ is essential for co	98.17
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	98.15
PF12838	52	Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014	98.14
PF13746	69	Fer4_18: 4Fe-4S dicluster domain	98.14
PF13187	55	Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_	98.12
PF13237	52	Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.	98.11
PRK10713	84	2Fe-2S ferredoxin YfaE; Provisional	98.03
TIGR02007	110	fdx_isc ferredoxin, 2Fe-2S type, ISC system. This	98.01
PLN00192	1344	aldehyde oxidase	97.98
PLN02593	117	adrenodoxin-like ferredoxin protein	97.98
KOG3256	212	consensus NADH:ubiquinone oxidoreductase, NDUFS8/2	97.96
TIGR02969	1330	mam_aldehyde_ox aldehyde oxidase. Members of this	97.88
PF14697	59	Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE	97.88
PLN03136	148	Ferredoxin; Provisional	97.86
PRK15033	389	tricarballylate utilization protein B; Provisional	97.86
TIGR00403	183	ndhI NADH-plastoquinone oxidoreductase subunit I p	97.86
COG1152	772	CdhA CO dehydrogenase/acetyl-CoA synthase alpha su	97.73
COG1453	391	Predicted oxidoreductases of the aldo/keto reducta	97.7
PTZ00038	191	ferredoxin; Provisional	97.69
PTZ00490	143	Ferredoxin superfamily; Provisional	97.65
COG0633	102	Fdx Ferredoxin [Energy production and conversion]	97.64
PRK13984	604	putative oxidoreductase; Provisional	97.61
PRK05888	164	NADH dehydrogenase subunit I; Provisional	97.52
CHL00014	167	ndhI NADH dehydrogenase subunit I	97.5
PRK14028	312	pyruvate ferredoxin oxidoreductase subunit gamma/d	97.5
CHL00065	81	psaC photosystem I subunit VII	97.47
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	97.45
PLN02906	1319	xanthine dehydrogenase	97.41
PRK02651	81	photosystem I subunit VII; Provisional	97.38
TIGR02936	91	fdxN_nitrog ferredoxin III, nif-specific. Members	97.38
PRK05713	312	hypothetical protein; Provisional	97.37
TIGR03048	80	PS_I_psaC photosystem I iron-sulfur protein PsaC.	97.32
PRK08222	181	hydrogenase 4 subunit H; Validated	97.32
PRK08348	120	NADH-plastoquinone oxidoreductase subunit; Provisi	97.31
PLN00071	81	photosystem I subunit VII; Provisional	97.3
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	97.28
TIGR01971	122	NuoI NADH-quinone oxidoreductase, chain I. This mo	97.28
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	97.25
PRK06273	165	ferredoxin; Provisional	97.24
TIGR02176	1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	97.24
PRK09626	103	oorD 2-oxoglutarate-acceptor oxidoreductase subuni	97.22
PRK05113	191	electron transport complex protein RnfB; Provision	97.16
COG1145	99	NapF Ferredoxin [Energy production and conversion]	97.16
PRK09477	271	napH quinol dehydrogenase membrane component; Prov	97.13
TIGR02163	255	napH_ ferredoxin-type protein, NapH/MauN family. M	97.13
PRK09625	133	porD pyruvate flavodoxin oxidoreductase subunit de	97.07
PF13484	67	Fer4_16: 4Fe-4S double cluster binding domain	97.04
TIGR02512	374	Fe_only_hydrog hydrogenases, Fe-only. This model d	97.03
PF12798	15	Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450	96.98
TIGR02494	295	PFLE_PFLC glycyl-radical enzyme activating protein	96.96
PRK06991	270	ferredoxin; Provisional	96.92
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	96.91
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	96.87
PRK12387	180	formate hydrogenlyase complex iron-sulfur subunit;	96.85
PRK09624	105	porD pyuvate ferredoxin oxidoreductase subunit del	96.81
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	96.81
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	96.8
COG1146	68	Ferredoxin [Energy production and conversion]	96.79
TIGR01944	165	rnfB electron transport complex, RnfABCDGE type, B	96.75
PRK09623	105	vorD 2-ketoisovalerate ferredoxin oxidoreductase s	96.74
PRK08764	135	ferredoxin; Provisional	96.73
TIGR00402	101	napF ferredoxin-type protein NapF. The gene codes	96.73
PRK09326	341	F420H2 dehydrogenase subunit F; Provisional	96.71
PRK10194	163	ferredoxin-type protein; Provisional	96.6
TIGR02179	78	PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta	96.57
PF12797	22	Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450	96.55
TIGR02912	314	sulfite_red_C sulfite reductase, subunit C. Member	96.5
PRK09898	208	hypothetical protein; Provisional	96.5
PRK10882	328	hydrogenase 2 protein HybA; Provisional	96.44
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.39
COG0437	203	HybA Fe-S-cluster-containing hydrogenase component	96.39
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.38
PF12837	24	Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450	96.29
COG1149	284	MinD superfamily P-loop ATPase containing an inser	96.27
COG2768	354	Uncharacterized Fe-S center protein [General funct	96.16
PF12800	17	Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450	96.06
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	96.06
PF00037	24	Fer4: 4Fe-4S binding domain; InterPro: IPR001450 T	96.06
TIGR02060	132	aprB adenosine phosphosulphate reductase, beta sub	96.04
COG4630	493	XdhA Xanthine dehydrogenase, iron-sulfur cluster a	95.92
PF12837	24	Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450	95.92
TIGR03149	225	cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S	95.67
TIGR02745	434	ccoG_rdxA_fixG cytochrome c oxidase accessory prot	95.58
TIGR00397	213	mauM_napG MauM/NapG family ferredoxin-type protein	95.56
PF12800	17	Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450	95.56
TIGR02700	234	flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T	95.56
COG1144	91	Pyruvate:ferredoxin oxidoreductase and related 2-o	95.35
PF00037	24	Fer4: 4Fe-4S binding domain; InterPro: IPR001450 T	95.18
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	95.17
TIGR00276	282	iron-sulfur cluster binding protein, putative. Thi	95.16
TIGR03287	391	methan_mark_16 putative methanogenesis marker 16 m	95.07
TIGR01582	283	FDH-beta formate dehydrogenase, beta subunit, Fe-S	95.02
KOG0430	1257	consensus Xanthine dehydrogenase [Nucleotide trans	94.9
TIGR01660	492	narH nitrate reductase, beta subunit. The Nitrate	94.89
PRK10194	163	ferredoxin-type protein; Provisional	94.84
TIGR03478	321	DMSO_red_II_bet DMSO reductase family type II enzy	94.84
TIGR00397	213	mauM_napG MauM/NapG family ferredoxin-type protein	94.66
PF12798	15	Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450	94.64
PRK10330	181	formate dehydrogenase-H ferredoxin subunit; Provis	94.64
TIGR03478	321	DMSO_red_II_bet DMSO reductase family type II enzy	94.61
TIGR03149	225	cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S	94.49
PRK14993	244	tetrathionate reductase subunit B; Provisional	94.46
PRK09476	254	napG quinol dehydrogenase periplasmic component; P	94.44
PRK13984	604	putative oxidoreductase; Provisional	94.42
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	94.39
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.35
PRK13795	636	hypothetical protein; Provisional	94.3
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	94.29
PRK07118	280	ferredoxin; Validated	94.2
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.18
TIGR02951	161	DMSO_dmsB DMSO reductase, iron-sulfur subunit. Thi	94.15
PRK10330	181	formate dehydrogenase-H ferredoxin subunit; Provis	94.13
PF13247	98	Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX	94.13
TIGR01582	283	FDH-beta formate dehydrogenase, beta subunit, Fe-S	94.12
TIGR03294	228	FrhG coenzyme F420 hydrogenase, subunit gamma. Thi	94.08
KOG3309	159	consensus Ferredoxin [Energy production and conver	94.03
TIGR02951	161	DMSO_dmsB DMSO reductase, iron-sulfur subunit. Thi	94.02
PRK07118	280	ferredoxin; Validated	94.01
PF12797	22	Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450	94.0
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	93.97
PRK10882	328	hydrogenase 2 protein HybA; Provisional	93.94
PRK09476	254	napG quinol dehydrogenase periplasmic component; P	93.81
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	93.63
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	93.58
TIGR02486	314	RDH reductive dehalogenase. This model represents	93.25
TIGR01660	492	narH nitrate reductase, beta subunit. The Nitrate	93.17
PF13187	55	Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_	93.06
COG2878	198	Predicted NADH:ubiquinone oxidoreductase, subunit	92.96
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	92.89
COG3894	614	Uncharacterized metal-binding protein [General fun	92.83
cd07030	259	RNAP_D D subunit of Archaeal RNA polymerase. The D	92.74
PRK09898	208	hypothetical protein; Provisional	92.58
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	92.43
PRK08364	70	sulfur carrier protein ThiS; Provisional	92.35
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	92.34
COG4231	640	Indolepyruvate ferredoxin oxidoreductase, alpha an	92.32
PF13746	69	Fer4_18: 4Fe-4S dicluster domain	92.26
COG2221	317	DsrA Dissimilatory sulfite reductase (desulfovirid	92.14
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	91.89
PRK00783	263	DNA-directed RNA polymerase subunit D; Provisional	91.79
TIGR02066	341	dsrB sulfite reductase, dissimilatory-type beta su	91.68
PRK01777	95	hypothetical protein; Validated	91.6
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	91.52
PRK14993	244	tetrathionate reductase subunit B; Provisional	91.43
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	91.03
PRK12387	180	formate hydrogenlyase complex iron-sulfur subunit;	90.97
PF13484	67	Fer4_16: 4Fe-4S double cluster binding domain	90.94
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	90.9
PF13237	52	Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.	90.86
COG1143	172	NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino	90.78
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	90.53
TIGR02745	434	ccoG_rdxA_fixG cytochrome c oxidase accessory prot	90.42
PF13247	98	Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX	90.35
PRK05802	320	hypothetical protein; Provisional	90.23
KOG3256	212	consensus NADH:ubiquinone oxidoreductase, NDUFS8/2	89.87
PRK12814	652	putative NADPH-dependent glutamate synthase small	89.84
COG3383	978	Uncharacterized anaerobic dehydrogenase [General f	89.82
PF14697	59	Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE	89.67
PF12838	52	Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014	89.35
COG0437	203	HybA Fe-S-cluster-containing hydrogenase component	89.12
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	88.96
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	88.83
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	88.66
COG1600	337	Uncharacterized Fe-S protein [Energy production an	88.37
PF13534	61	Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9	88.34
PF10418	40	DHODB_Fe-S_bind: Iron-sulfur cluster binding domai	87.38
PF13183	57	Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_	87.05
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	86.74
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	86.2
COG1150	195	HdrC Heterodisulfide reductase, subunit C [Energy	85.52
PLN00071	81	photosystem I subunit VII; Provisional	85.04
TIGR03048	80	PS_I_psaC photosystem I iron-sulfur protein PsaC.	84.91
COG1145	99	NapF Ferredoxin [Energy production and conversion]	84.78
PRK05659	66	sulfur carrier protein ThiS; Validated	84.72
PRK05035	695	electron transport complex protein RnfC; Provision	84.42
PF14691	111	Fer4_20: Dihydroprymidine dehydrogenase domain II,	83.89
COG1152	772	CdhA CO dehydrogenase/acetyl-CoA synthase alpha su	83.76
CHL00065	81	psaC photosystem I subunit VII	83.62
COG1941	247	FrhG Coenzyme F420-reducing hydrogenase, gamma sub	83.4
PRK08348	120	NADH-plastoquinone oxidoreductase subunit; Provisi	83.39
PRK09626	103	oorD 2-oxoglutarate-acceptor oxidoreductase subuni	83.23
COG1146	68	Ferredoxin [Energy production and conversion]	82.77
TIGR02936	91	fdxN_nitrog ferredoxin III, nif-specific. Members	82.67
PRK02651	81	photosystem I subunit VII; Provisional	82.55
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	82.37
PRK09477	271	napH quinol dehydrogenase membrane component; Prov	82.27
PRK05888	164	NADH dehydrogenase subunit I; Provisional	81.61
TIGR02163	255	napH_ ferredoxin-type protein, NapH/MauN family. M	81.6
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	81.57
PF14157	63	YmzC: YmzC-like protein; PDB: 3KVP_E.	81.43
PF13459	65	Fer4_15: 4Fe-4S single cluster domain	81.0
CHL00014	167	ndhI NADH dehydrogenase subunit I	80.58
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	80.33
TIGR00403	183	ndhI NADH-plastoquinone oxidoreductase subunit I p	80.13

>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]

Probab=100.00  E-value=2.6e-70  Score=467.90  Aligned_cols=237  Identities=69%  Similarity=1.276  Sum_probs=224.3

Q ss_pred             CCCCCceeEEEEEeeCCCCC-CCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecc
Q 023670           41 ASANTDTKKFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA  119 (279)
Q Consensus        41 ~~~~~~~~~~~i~R~~p~~~-~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lA  119 (279)
                      ++.+++.++|+|||||||.+ .+|+.|+|+|+.+++|.+|||||.+|+++.||||+||+|||+||||||+|+|||.+.||
T Consensus        40 ~~~~~rlKtFeIYRwnPd~pg~kP~~Q~y~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~G~NtLA  119 (288)
T KOG3049|consen   40 AATGPRLKTFEIYRWNPDNPGDKPHLQTYEVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNINGTNTLA  119 (288)
T ss_pred             cccCCccceEEEEecCCCCCCCCccceeeeecHHhcchHHHHHHHHhhcccCCceehhhhhhccccccceeccCCCceeE
Confidence            45578999999999999988 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccC-CCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCC-CCCCCCCChhhHhhhcccccCcccCc
Q 023670          120 CLTKISP-SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPM-PGKEIPQSKKDRAKLDGMYECILCAC  197 (279)
Q Consensus       120 C~t~v~~-g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~-~~~~~~~s~~~~~~~~~~~~CI~CG~  197 (279)
                      |.++|+. ++...+|.||+|+.||||||+|++.||++|++++||++.++.... .+++++||.+++.++++++.||+|.+
T Consensus       120 Ci~kId~n~sK~~kIyPLPHmfvvkDLVpDm~~FY~QYksIqPwlqrk~~~~~~g~~q~lQS~~dR~kLDGlYECILCAC  199 (288)
T KOG3049|consen  120 CICKIDQNESKSTKIYPLPHMFVVKDLVPDMTNFYAQYKSIEPWLQRKNPAKEPGKKQYLQSVEDRAKLDGLYECILCAC  199 (288)
T ss_pred             EEEeeccCCcccceeecCcceeeehhhcccHHHHHHHHhcccHHhhcCCcccCccHHHHHHhHHHHHhhccHHHHHHHHH
Confidence            9999994 577889999999999999999999999999999999998765431 35788999999999999999999999


Q ss_pred             ccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHH
Q 023670          198 CSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQL  277 (279)
Q Consensus       198 C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~  277 (279)
                      |+.+||+||||.+.|+||++++++|||+.|+||+.+++|+..+.+++.+|+|++..+|+..||+|++|+.+|.+++..++
T Consensus       200 CsTSCPSYWWN~ekYLGPAvLmqAyRWiiDSRD~~t~eRl~~l~d~~slyrCHtImNCtrtCPKgLNPg~aI~eiK~ll~  279 (288)
T KOG3049|consen  200 CSTSCPSYWWNSEKYLGPAVLMQAYRWIIDSRDEATKERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKLLA  279 (288)
T ss_pred             hcCCCcccccCcccccCHHHHHHHHhhhhcchhHHHHHHHHHhcCchhheehhhhhhhhhcCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998999999999999999999999999999999998875

>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit

Probab=100.00  E-value=3.5e-68  Score=481.60  Aligned_cols=272  Identities=71%  Similarity=1.227  Sum_probs=230.1

Q ss_pred             CcchhHHHHhhhcccccchhhhhhhhhhhhhhhhhhccCCCCCCCceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHH
Q 023670            1 MATGLIRRAISSSAAVAQPARLLTARFHASEAEAQKVEPKASANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVL   80 (279)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvL   80 (279)
                      ||.|+++|+-.+..-++.|+...    .+.+++.+.++++.+++.++++|+||||||+.+.+||||+|+|++.+.++|||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tVL   76 (276)
T PLN00129          1 MAAGLLRRLAGAKAGLLAPAAAA----SAAASAETKASSKGSKPSNLKEFQIYRWNPDNPGKPHLQSYKVDLNDCGPMVL   76 (276)
T ss_pred             Cchhhhhhhhcccccccccchhh----hhhhcccccccCCCCCCCceEEEEEEeeCCCCCCCceeEEEEeCCCCCCchHH
Confidence            89999999854444444444211    11122223333344556678999999999998889999999999874379999


Q ss_pred             HHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCCC-CceEEeeCCCCcchhhhhhccchhhhhhhcc
Q 023670           81 DALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSG-SASTITPLPHMFVIKDLVVDMTNFYNQYKSI  159 (279)
Q Consensus        81 dal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g~-~~~~iepl~~~~vikDLvvD~~~~~~~~~~~  159 (279)
                      |+|++|+.++||+|+||++||+|+||+|+|+|||+++|||+|+|.+.. ++++||||++||||||||||++.|+++++++
T Consensus        77 d~L~~Ik~~~D~sLsfr~sCr~giCGsCam~ING~p~LAC~t~v~~~~~~~i~iePl~~fpVirDLvVD~~~f~~klk~v  156 (276)
T PLN00129         77 DVLIKIKNEQDPSLTFRRSCREGICGSCAMNIDGKNTLACLTKIDRDESGPTTITPLPHMFVIKDLVVDMTNFYQQYKSI  156 (276)
T ss_pred             HHHHHHHHcCCCCeEEeccCCCCCCCCCeeEECCcccccccccHhhcCCCcEEEEECCCCCeeeecccccHHHHHHHHhc
Confidence            999999988999999999999999999999999999999999999653 5789999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHH
Q 023670          160 EPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEA  239 (279)
Q Consensus       160 ~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~  239 (279)
                      +||+..+...+....+.+|++++.+.++.+..||+||.|+++||++.+++++|+||++++++++++.|+|++..++|++.
T Consensus       157 ~p~l~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~CG~C~saCPv~~~~~~~flGP~~l~~a~R~~~D~RD~~~~erl~~  236 (276)
T PLN00129        157 EPWLKTKKPPEDGQKEHLQSKEDRAKLDGMYECILCACCSTSCPSYWWNPEKFLGPAALLHAYRWISDSRDEYTKERLEA  236 (276)
T ss_pred             cccccCCCCCCCCccccCCCHHHHHHHhhhhhCccccccccccCCCcccCcccccHHHHHHHHHhcCCccccchHHHHHH
Confidence            99998654332122468899999999999999999999999999998777779999999999999999998766778876


Q ss_pred             hhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHH
Q 023670          240 IDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ  276 (279)
Q Consensus       240 l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~  276 (279)
                      +.+..++|.|++||+|+.+||+||++.++|.++|+.+
T Consensus       237 l~~~~gl~~C~~C~~C~~vCPkgI~p~~~I~~lR~~~  273 (276)
T PLN00129        237 LDDEFKLYRCHTIRNCSNACPKGLNPAKAIAKIKQLL  273 (276)
T ss_pred             HHhcCCCCcCcChhhccccCCCCCCHHHHHHHHHHHH
Confidence            6656699999999999999999999999999999764

>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]

Probab=100.00  E-value=9.4e-68  Score=466.44  Aligned_cols=228  Identities=53%  Similarity=0.974  Sum_probs=212.1

Q ss_pred             eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC
Q 023670           47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP  126 (279)
Q Consensus        47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~  126 (279)
                      +++|+|+||||+.+ +||||+|+|++++ |+||||||.+|++++||+|+|+++||+||||||+|+|||+++|||+|.+.+
T Consensus         2 ~~~~~i~R~~p~~~-~p~~~~yev~~~~-~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~prLAC~t~~~~   79 (234)
T COG0479           2 TLKFKIYRYNPDDD-KPYWQTYEVPYDE-GMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGKPRLACKTLMKD   79 (234)
T ss_pred             cEEEEEEEECCCCC-CcceEEEEecCCC-CCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEECCccccchhchhhh
Confidence            68999999999987 9999999999997 999999999999999999999999999999999999999999999999997


Q ss_pred             CCC-ceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCc
Q 023670          127 SGS-ASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSY  205 (279)
Q Consensus       127 g~~-~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~  205 (279)
                      ..+ .++||||++||||||||||+++||++|++++||+..+.... .++ .+|++++++.+++++.||.||.|+++||++
T Consensus        80 ~~~~~i~iePL~~fpVIkDLVVD~~~f~~~~~~ikp~~~~~~~~~-~~~-~~q~pe~~~~~~~~~~CI~Cg~C~s~CP~~  157 (234)
T COG0479          80 LEEGVITIEPLPNFPVIRDLVVDMEEFYEKLRKIKPYLIRDDEPD-PGE-RLQSPEEREKLDELSECILCGCCTAACPSI  157 (234)
T ss_pred             ccCCceEEEECCCCCceeeeeeccHHHHHhhhccccceecCCcCC-Ccc-ccCCHHHHHHHHhhhhccccchhhhhCCcc
Confidence            533 79999999999999999999999999999999999853332 233 899999999999999999999999999999


Q ss_pred             ccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHhC
Q 023670          206 WWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR  279 (279)
Q Consensus       206 ~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~~  279 (279)
                      ++++ +|+||+++.+++||+.|+||+.+.+|+..+....|+|.|++|++|+++||+||+++.+|..||++++++
T Consensus       158 ~~~~-~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~i~p~~aI~~lk~~~~~~  230 (234)
T COG0479         158 WWNP-DFLGPAALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKGIPPAKAIAELKRRLAKR  230 (234)
T ss_pred             cccc-CCcCHHHHHHHHHHhcCCcccchHHHHHhccCCCCEecccccccccccCCCCCCHHHHHHHHHHHHHHH
Confidence            9875 899999999999999999999888999877767799999999999999999999999999999988764

>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=100.00  E-value=1e-63  Score=445.15  Aligned_cols=231  Identities=50%  Similarity=1.022  Sum_probs=210.1

Q ss_pred             CceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccc
Q 023670           45 TDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKI  124 (279)
Q Consensus        45 ~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v  124 (279)
                      ..+++|+||||||+.+.+||||+|+|++.+.++||||+|++|+ ++||+|+|+++||+|+||+|+|+|||+++|||+|++
T Consensus         2 ~~~~~~~i~R~~~~~~~~~~~~~y~v~~~~~~~tvld~L~~ik-~~d~~l~fr~sCr~giCGsCa~~iNG~~~LaC~t~~   80 (235)
T PRK12575          2 ADTRILHIYRYDPDDDAAPRMQRYEIAPRAEDRMLLDVLGRVK-AQDETLSYRRSCREGICGSDAMNINGRNGLACLTNM   80 (235)
T ss_pred             CceEEEEEEeeCCCCCCCceeEEEEecCCCCCCcHHHHHHHHH-hcCCCeeeeccCCCCCCCCCeeEECCeEcchhhCcH
Confidence            3579999999999988999999999998763589999999999 789999999999999999999999999999999999


Q ss_pred             cCCCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCC
Q 023670          125 SPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPS  204 (279)
Q Consensus       125 ~~g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~  204 (279)
                      .+..++++||||++||||||||||++.|++++++++||+..+...+  +.+.+|++++.+.++++..||+||.|.++||+
T Consensus        81 ~~~~~~i~iePl~~~pvikDLvvD~~~~~~~~~~~~p~l~~~~~~~--~~~~~~~p~~~~~~~~~~~CI~CG~C~s~CP~  158 (235)
T PRK12575         81 QALPREIVLRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLINDTVPP--ERERLQTPQEREQLDGLYECILCACCSTACPS  158 (235)
T ss_pred             hHcCCCEEEeECCCCCccccceecCHHHHHHHHhccCccccCCCCc--cccccCCHHHHHHHHhhhhCcccccccccccC
Confidence            9655679999999999999999999999999999999998654332  34678999999999999999999999999999


Q ss_pred             cccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670          205 YWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK  278 (279)
Q Consensus       205 ~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~  278 (279)
                      +..++++|+||++++++++++.++++....++++.+.++.++|.|++||+|+.+||+||++.++|..+|+.+++
T Consensus       159 ~~~~~~~f~GP~~~~~a~r~~~D~rd~~~~~rl~~l~~~~gl~~C~~C~~C~~vCPkgI~~~~~I~~lR~~~~~  232 (235)
T PRK12575        159 YWWNPDKFVGPAGLLQAYRFIADSRDDATAARLDDLEDPYRLFRCRTIMNCVDVCPKGLNPARAIGQIRTMLAR  232 (235)
T ss_pred             ccccCCCcCCHHHHHHHHHHHhCCCCCCcHHHHHhhhcCCCcccccCcchhccccCCCCcHHHHHHHHHHHHHh
Confidence            98776779999999999999999998766677776665678999999999999999999999999999998875

>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional

Probab=100.00  E-value=1e-63  Score=446.64  Aligned_cols=232  Identities=32%  Similarity=0.609  Sum_probs=206.6

Q ss_pred             CceeEEEEEeeCCC-CCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccc
Q 023670           45 TDTKKFQIYRWNPD-SPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTK  123 (279)
Q Consensus        45 ~~~~~~~i~R~~p~-~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~  123 (279)
                      .++++|+|+||||+ .+.+||||+|+|++++ ++||||||++|++++||+|+||+|||+|+||+|+|+|||+++|||+|+
T Consensus         2 ~~~~~~~i~R~~p~~~~~~~~~~~y~v~~~~-~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~ING~~~LAC~t~   80 (239)
T PRK13552          2 GRTLTFNIFRYNPQDPGSKPHMVTYQLEETP-GMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVINGRPTLACRTL   80 (239)
T ss_pred             CceEEEEEEeeCCCCCCCCcceEEEEecCCC-CCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEECCeEhhhhhcc
Confidence            46799999999995 5678999999999998 999999999999889999999999999999999999999999999999


Q ss_pred             ccCCC-CceEEeeCCCCcchhhhhhccchhhhhh-hccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCC
Q 023670          124 ISPSG-SASTITPLPHMFVIKDLVVDMTNFYNQY-KSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTS  201 (279)
Q Consensus       124 v~~g~-~~~~iepl~~~~vikDLvvD~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~  201 (279)
                      +.+.. ++++||||++||||||||||++.|++++ +.++||+..+.....+..+.+|+++++++++.+..||+||.|+++
T Consensus        81 v~~~~~~~i~iePl~~fpVirDLvVD~~~~~~~~~~~v~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~sa  160 (239)
T PRK13552         81 TSDYPDGVITLMPLPVFKLIGDLSVNTGKWFREMSERVESWIHTDKEFDIHRLEERMEPEEADEIYELDRCIECGCCVAA  160 (239)
T ss_pred             HhhcCCCcEEEEECCCCCcceeCccccHHHHHHHHHhhcCccccCCCCCCcccccCCCHHHHHHhhchhhccccchhHhh
Confidence            99643 4799999999999999999999999999 899999986422211224678999999999999999999999999


Q ss_pred             CCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHH-HHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670          202 CPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERL-EAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK  278 (279)
Q Consensus       202 CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl-~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~  278 (279)
                      ||++..+ .+|+||+++.++++++.|+|++...+++ ..+....++|.|++||+|+++||+||++.++|.++|+.+++
T Consensus       161 CP~~~~~-~~f~GP~~~~~a~r~~~d~rd~~~~~~~~~~l~~~~gi~~C~~C~~C~~vCPk~I~~~~~I~~lr~~~~~  237 (239)
T PRK13552        161 CGTKQMR-EDFVGAVGLNRIARFELDPRDERTDEDFYELIGNDDGVFGCMSLLGCEDNCPKDLPLQQQIAYLRRKMAA  237 (239)
T ss_pred             CCCCccC-CCccChHHHHHHHHHhhCCCcchhHHHHHHHhccCCCcCCCcCcCccchhCCCCCcHHHHHHHHHHHHHh
Confidence            9998765 5799999999999999999987666666 34445568999999999999999999999999999988765

>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=100.00  E-value=8.7e-62  Score=436.47  Aligned_cols=230  Identities=26%  Similarity=0.512  Sum_probs=205.3

Q ss_pred             CceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccC-------CCCCccccCCCCCCccCeeEEEECCeee
Q 023670           45 TDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSE-------IDPSLTFRRSCREGICGSCAMNIDGCNG  117 (279)
Q Consensus        45 ~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~-------~dptl~~~~~c~~g~CG~C~v~inG~~~  117 (279)
                      ..+++|+|+|||| .+.+||||+|+|++++ ++||||||.+|+++       +|++|+|+++||+|+||+|+|+|||+++
T Consensus         3 ~~~~~~~i~R~~~-~~~~~~~q~y~v~~~~-~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING~p~   80 (249)
T PRK08640          3 EKTVRLIIKRQDG-PDSKPYWEEFEIPYRP-NMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVINGKPR   80 (249)
T ss_pred             CcEEEEEEEeeCC-CCCCceeEEEEecCCC-CCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECCccc
Confidence            3479999999999 6689999999999988 99999999999864       4778999999999999999999999999


Q ss_pred             ccccccccCCCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCc
Q 023670          118 LACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCAC  197 (279)
Q Consensus       118 lAC~t~v~~g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~  197 (279)
                      |||+|.+.+.+++++||||++||||||||||++.|+++++.++||+..+..+. .+.+.+|++++...++++..||+||.
T Consensus        81 LAC~t~v~~~~~~i~iePl~~fpVikDLvVD~~~~~~~~~~~~p~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~CI~CG~  159 (249)
T PRK08640         81 QACTALIDQLEQPIRLEPMSTFPVVRDLQVDRSRMFDNLKRVKAWIPIDGTYD-LGPGPRMPEEKRQWAYELSKCMTCGC  159 (249)
T ss_pred             hhhhChHHHcCCcEEEEECCCCCccccCcEEChHHHHHHHhhCCccccCCCCC-CCcccCCCHHHHHHHhhhhhccCcCc
Confidence            99999998666789999999999999999999999999999999998765432 24557799999999999999999999


Q ss_pred             ccCCCCCcccCCCcccCHHHHHHHHHHhhcC-cchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHH
Q 023670          198 CSTSCPSYWWTSEAYLGPAALLHANRWISDS-RDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ  276 (279)
Q Consensus       198 C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~-r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~  276 (279)
                      |+++||++..+ ++|+||+++.+++++..++ ++....+|++.+....++|.|++||+|+.+||+||++.+.|..+|+.+
T Consensus       160 C~saCP~~~~~-~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g~~~C~~Cg~C~~vCPkgI~~~~~I~~lr~~~  238 (249)
T PRK08640        160 CLEACPNVNEK-SDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIADCGNAQNCVRVCPKGIPLTTSIAAMNRET  238 (249)
T ss_pred             ccccCCCCccC-CCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCCeeCCcCcCcccccCCCCCCHHHHHHHHHHHH
Confidence            99999999765 5799999999999998888 443455677766556799999999999999999999999999999988


Q ss_pred             Hh
Q 023670          277 LK  278 (279)
Q Consensus       277 ~~  278 (279)
                      ++
T Consensus       239 ~~  240 (249)
T PRK08640        239 TK  240 (249)
T ss_pred             HH
Confidence            75

>PRK12385 fumarate reductase iron-sulfur subunit; Provisional

Probab=100.00  E-value=1.7e-59  Score=420.74  Aligned_cols=230  Identities=31%  Similarity=0.606  Sum_probs=208.2

Q ss_pred             ceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc
Q 023670           46 DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS  125 (279)
Q Consensus        46 ~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~  125 (279)
                      ++++|+||||||+++..||||.|+|++++ ++||||||.+|+.++||+|+|+.+|++|+||+|+|+|||+++|||.|++.
T Consensus         5 ~~v~~~i~R~~~~~~~~~~~~~~~v~~~~-~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~InG~~~laC~t~~~   83 (244)
T PRK12385          5 KNLKIEVLRYNPEVDTEPHSQTYEVPYDE-TTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLR   83 (244)
T ss_pred             cEEEEEEEeeCCCCCCCceeEEEEeeCCC-CCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceECccChhhHhhHHH
Confidence            47999999999999999999999999998 99999999999988899999999999999999999999999999999999


Q ss_pred             CCCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCc
Q 023670          126 PSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSY  205 (279)
Q Consensus       126 ~g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~  205 (279)
                      +.++.++||||++|||||||+||++.|+++++.++||+..+...+ .+.+.+|++++.+.+..+..||+||.|+++||++
T Consensus        84 ~~~~~~~iePl~~fpvikDLvvD~~~~~~k~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP~~  162 (244)
T PRK12385         84 DYTGGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNDRTP-DDGPNKQTPAQMAKYHQFSGCINCGLCYAACPQF  162 (244)
T ss_pred             HcCCCeEEeeCCCCCeeeeCeeecHHHHHHHHHhcCeeeCCCCCC-CcccccCCHHHHHHHHHHHhcCcCccccCcCcCc
Confidence            866779999999999999999999999999999999998654332 2335678888988888999999999999999999


Q ss_pred             ccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670          206 WWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK  278 (279)
Q Consensus       206 ~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~  278 (279)
                      ..+ ++|+||+++.+++++..++++....+++..+....++|.|++||+|+.+||+||++.++|..+|+.+++
T Consensus       163 ~~~-~~y~GP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~gl~~C~~C~~C~~vCP~~I~~~~~I~~~r~~~~~  234 (244)
T PRK12385        163 GLN-PEFIGPAAITLAHRYNLDSRDHGKKERMKQLNGQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESAK  234 (244)
T ss_pred             ccC-CCCCCHHHHHHHHHHhhcCCccchHHHHHhhcccchhhhCcCcccccccCCCCCCHHHHHHHHHHHHHH
Confidence            764 679999999999999999998776677765554568999999999999999999999999999987764

>PRK12386 fumarate reductase iron-sulfur subunit; Provisional

Probab=100.00  E-value=1.5e-58  Score=414.80  Aligned_cols=224  Identities=27%  Similarity=0.539  Sum_probs=200.6

Q ss_pred             ceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc
Q 023670           46 DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS  125 (279)
Q Consensus        46 ~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~  125 (279)
                      -+++|+|+||||+.   +|||+|+|++++ ++||||+|++|+.++||+|+|+.||+.|+||+|+|.|||+++|||+|++.
T Consensus         3 ~~~~~~I~R~~~~~---~~~q~y~v~~~~-~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~InG~p~laC~t~~~   78 (251)
T PRK12386          3 YTAKFRVWRGDASG---GELQDYTVEVNE-GEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEINGRPRLMCMTRMS   78 (251)
T ss_pred             cEEEEEEEcCCCCC---CceEEEEEeCCC-CCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEECccEeccHHhHHH
Confidence            46899999999754   599999999998 89999999999988999999999999999999999999999999999998


Q ss_pred             --CCCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCC
Q 023670          126 --PSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCP  203 (279)
Q Consensus       126 --~g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP  203 (279)
                        ++++.++||||++||||||||||++.|++++++++||+......+   .+.+|+++++++++.+..||+||.|+++||
T Consensus        79 ~~~~~~~itiepl~~fpVikDLvVD~~~~~~~l~~i~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~CI~CG~C~s~CP  155 (251)
T PRK12386         79 TFDEDETVTVTPMRTFPVIRDLVTDVSFNYEKAREIPSFTPPKDLQP---GEYRMQQVDVERSQEFRKCIECFLCQNVCH  155 (251)
T ss_pred             HhCCCCeEEEccCCCCCccccceEEcHHHHHHHHhcCCcccCCCCCc---cccCCCHHHHHHHhchhhcccCCcccCcCC
Confidence              345689999999999999999999999999999999997543322   357799999999999999999999999999


Q ss_pred             CcccC---CCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHH-HHHHHHHHHHh
Q 023670          204 SYWWT---SEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGK-QIINIKQLQLK  278 (279)
Q Consensus       204 ~~~~~---~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~-~I~~lR~~~~~  278 (279)
                      ++.++   +.+|+||++++++++++.|+||.  .+|+..+....++|.|++||+|+++||+||++.+ .|..+|+.+.+
T Consensus       156 v~~~~~~~~~~f~GP~~~~~a~r~~~D~Rd~--~~rl~~~~~~~gl~~C~~C~~C~~vCPkgI~~~~~~I~~lr~~~~~  232 (251)
T PRK12386        156 VVRDHEENKPAFAGPRFLMRIAELEMHPLDT--ADRRAEAQEEHGLGYCNITKCCTEVCPEHIKITDNALIPMKERVVD  232 (251)
T ss_pred             cccccCCCcccccCHHHHHHHHHhhcCccch--HHHHHHhhcccCcccCcCCCCcCCcCCCCcChhHHHHHHHHHHHHH
Confidence            99764   35799999999999999999986  3566655555689999999999999999999995 99999987764

>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=100.00  E-value=5.2e-58  Score=427.57  Aligned_cols=227  Identities=37%  Similarity=0.684  Sum_probs=205.3

Q ss_pred             eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC
Q 023670           47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP  126 (279)
Q Consensus        47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~  126 (279)
                      .++|+||||||+.  +||||+|+|++++ |+||||||++|++++||+|||+.+|+.|+||+|+|+|||+++|||+|++.+
T Consensus         2 ~i~~~i~R~~~~~--~p~~~~~~v~~~~-~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~~   78 (329)
T PRK12577          2 EVLFKILRQKQNS--APYVQTYTLEVEP-GNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVGS   78 (329)
T ss_pred             eEEEEEEeeCCCC--CCeEEEEEEECCC-CChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchhh
Confidence            5799999999964  8999999999998 999999999999888899999999999999999999999999999999985


Q ss_pred             C-----------CCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCccc
Q 023670          127 S-----------GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILC  195 (279)
Q Consensus       127 g-----------~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~C  195 (279)
                      +           +++++||||++||||||||||++.|+++++.++||+..+.... .+.+.+|++++...++.+..||+|
T Consensus        79 ~~~~~~~~~~~~~~~i~iePl~~~pvikDLvVD~~~~~~k~~~v~p~~~~~~~~~-~~~e~~~~p~~~~~~~~~~~Ci~C  157 (329)
T PRK12577         79 ELARLSDSNSGAIPEITIAPLGNMPVIKDLVVDMSSFWQNLEAVDPYVSTAARQV-PEREFLQTPEERSKLDQTGNCILC  157 (329)
T ss_pred             hhccccccccCCCCeEEEEECCCCCccccceeccHHHHHHHHhccCccccCCCCC-CcccccCCHHHHHHHHHhhhCccc
Confidence            2           3689999999999999999999999999999999998654422 355788999999999999999999


Q ss_pred             CcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhh-cccCccCchhhhhhhhhCCCCCChHHHHHHHHH
Q 023670          196 ACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAID-DEFKLYRCHTILNCARACPKGLNPGKQIINIKQ  274 (279)
Q Consensus       196 G~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~-~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~  274 (279)
                      |.|+++||++..+ ++|+||+++.++++++.|++++...++++.+. ...++|.|++|++|+.+||+||++.++|..+|+
T Consensus       158 G~C~s~CP~~~~~-~~f~GP~~~~~a~r~~~d~rd~~~~~~l~~~~~~~~giw~C~~C~~C~~~CPk~I~~~~~I~~lr~  236 (329)
T PRK12577        158 GACYSECNAREVN-PEFVGPHALAKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPMEVAPLDQITKIKQ  236 (329)
T ss_pred             CcccccCCCCCcC-cCcCCHHHHHHHHHHhhCCcchhHHHHHHHHhcCCCccccCcChhhhhhhCCCCCchHHHHHHHHH
Confidence            9999999999865 57999999999999999999876667776554 456899999999999999999999999999998


Q ss_pred             HHHh
Q 023670          275 LQLK  278 (279)
Q Consensus       275 ~~~~  278 (279)
                      .+++
T Consensus       237 ~~~~  240 (329)
T PRK12577        237 EILA  240 (329)
T ss_pred             HHHH
Confidence            8864

>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=100.00  E-value=4.2e-58  Score=409.49  Aligned_cols=228  Identities=63%  Similarity=1.163  Sum_probs=205.5

Q ss_pred             EEEEEeeCCCCCCCCceEEEEEecc-CCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCC
Q 023670           49 KFQIYRWNPDSPSKPELKEFEINLK-ECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPS  127 (279)
Q Consensus        49 ~~~i~R~~p~~~~~~~~~~~~v~~~-~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g  127 (279)
                      +|+||||||+.|.+|||+.|+|+++ + ++||||||+++++++||+|+|+.+|+.|+||+|+|+|||+++|||+|++.+.
T Consensus         1 ~~~v~r~~~~~~~~~~~~~~~v~~~~~-~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~~laC~t~~~~~   79 (232)
T PRK05950          1 TFKIYRYNPDVDANPRMQTYEVDVDEC-GPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLACITPISDL   79 (232)
T ss_pred             CeEEEecCCCCCCCceeEEEEeCCCCC-CCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcCccchhChHhHc
Confidence            5899999999999999999999998 8 9999999999997789999999999999999999999999999999999975


Q ss_pred             -CCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcc
Q 023670          128 -GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYW  206 (279)
Q Consensus       128 -~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~  206 (279)
                       +++++||||++||||||||||++.|+++++.++||+..+...+  ..+..+++++...+.++..||+||.|.++||++.
T Consensus        80 ~~~~~tiepl~~~~vikDLvvD~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~  157 (232)
T PRK05950         80 KKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLINDTPPP--ARERLQSPEDREKLDGLYECILCACCSTSCPSFW  157 (232)
T ss_pred             CCCeEEEEECCCCCeeeeceeehHHHHHHHHhccCeecCCCCCC--chhccCCHHHHHHHHhHHhccccccccccCCccc
Confidence             6789999999999999999999999999999999998544322  3356788888888999999999999999999997


Q ss_pred             cCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHhC
Q 023670          207 WTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR  279 (279)
Q Consensus       207 ~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~~  279 (279)
                      .++++|+||++++++++++.++++....++++.+.++.++|.|++||+|+.+||+||++.++|..||+.++++
T Consensus       158 ~~~~~~~gp~~l~~~~r~~~d~rd~~~~~~~~~~~~~~~i~~C~~Cg~C~~~CP~gi~~~~~I~~lR~~~~~~  230 (232)
T PRK05950        158 WNPDKFLGPAALLQAYRFIADSRDEATGERLDILDDPFGVFRCHTIMNCVEVCPKGLNPTKAIGEIKRMLLER  230 (232)
T ss_pred             cCCCCCCCHHHHHHHHHHhhCCccchhHHHHHHhhcccccccCcCcCCcCccccCCCCHHHHHHHHHHHHHhh
Confidence            6666699999999999999888876555666655555689999999999999999999999999999998753

>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=100.00  E-value=1.1e-56  Score=409.72  Aligned_cols=228  Identities=31%  Similarity=0.596  Sum_probs=203.5

Q ss_pred             CCCceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccc
Q 023670           43 ANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLT  122 (279)
Q Consensus        43 ~~~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t  122 (279)
                      +.+++++|+||||||+.  .||||+|+|++++ ++||||||+++++.+||+|+|+.+|+.|+||+|+|+|||+++|||.|
T Consensus         4 ~~~~~~~~~i~R~~~~~--~~~~~~~~v~~~~-~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING~~~laC~t   80 (279)
T PRK12576          4 SPEKEVIFKVKRYDPEK--GSWWQEYKVKVDR-FTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGEPRLACKT   80 (279)
T ss_pred             CCCcEEEEEEEecCCCC--CCeEEEEEEecCC-CCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECCcEeccccC
Confidence            36778999999999975  4999999999998 99999999999987899999999999999999999999999999999


Q ss_pred             cccC----CCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcc
Q 023670          123 KISP----SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACC  198 (279)
Q Consensus       123 ~v~~----g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C  198 (279)
                      ++.+    +++.++||||++||||||||||++.|++++++++||+.+.........+.++++++.+.+++...||+||+|
T Consensus        81 ~v~~~~~~~~~~~tiePl~~~~vikDLvvD~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~CI~CG~C  160 (279)
T PRK12576         81 LVLDVAKKYNSVITIEPMDYFKVVKDLIVDFDEFYERMFKVKPRLYRAKEVLEGKAEHRLKPEDQKELWKFAQCIWCGLC  160 (279)
T ss_pred             cHHHhhcCCCCcEEEEECCCCceeecceechHHHHHHHHhccceeccCccCCCCccccccCHHHHHHhhcchhCcccCcc
Confidence            9985    457899999999999999999999999999999999986543321224678999999999999999999999


Q ss_pred             cCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHH
Q 023670          199 STSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ  276 (279)
Q Consensus       199 ~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~  276 (279)
                      +++||++..+ ++|+||.+++++++++.++++....+++..+  ..++|.|++||+|+.+||+||++.++|..+|+.+
T Consensus       161 ~~~CP~~~~~-~~flgP~~l~~a~r~~~d~rd~~~~~rl~~~--~~~i~~C~~Cg~C~~~CP~~I~~~~~I~~lR~~~  235 (279)
T PRK12576        161 VSACPVVAID-PEFLGPAAHAKGYRFLADPRDTITEERMKIL--IDSSWRCTYCYSCSNVCPRDIEPVTAIKKTRSFT  235 (279)
T ss_pred             cccCCCcccc-CCcCCHHHHHHHHHHhcCccccchHHHHHHH--cCcCCcccCcccchhhCCCCCcHHHHHHHHHHHH
Confidence            9999999765 5799999999999999999887665666544  3478999999999999999999999999999875

>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein

Probab=100.00  E-value=1.2e-55  Score=390.75  Aligned_cols=219  Identities=52%  Similarity=0.982  Sum_probs=195.6

Q ss_pred             EEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC-CCCc
Q 023670           52 IYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP-SGSA  130 (279)
Q Consensus        52 i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~-g~~~  130 (279)
                      ||||||+.+.+||||.|+|++++ |+||||||++++.++||+|+|+.+|+.|+||+|+|+|||+++|||+|++.+ |.+.
T Consensus         1 i~R~~~~~~~~~~~~~~~v~~~~-~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~~   79 (220)
T TIGR00384         1 VLRFNPDVDEKPHLQSYEVPADE-GMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQPV   79 (220)
T ss_pred             CcCcCCCCCCCceeEEEEEeCCC-CCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCCCc
Confidence            79999999999999999999988 999999999999778999999999999999999999999999999999998 7666


Q ss_pred             eEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCC
Q 023670          131 STITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSE  210 (279)
Q Consensus       131 ~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~  210 (279)
                      ++||||++||+||||+||++.|+++++.++||+....... .+.+.++++++...+.++.+||+||.|+++||++..+ .
T Consensus        80 ~~iepl~~~pvikDLvvD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~~-~  157 (220)
T TIGR00384        80 MKIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLIRKSQPE-PEGEFLQTPEQREKLDQLSGCILCGCCYSSCPAFWWN-P  157 (220)
T ss_pred             EEEeeCCCCceeeeeeechHHHHHHHHhcCCeecCCCCCC-ccccccCCHHHHHHHhhhhhccccccccccCCCCccC-C
Confidence            9999999999999999999999999999999998644222 1335678888888889999999999999999999754 4


Q ss_pred             cccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHH
Q 023670          211 AYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIK  273 (279)
Q Consensus       211 ~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR  273 (279)
                      +|+||++++++++++.++++....++++.+.+..++|.|++||+|+++||+||++.++|..||
T Consensus       158 ~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~I~~~~~I~~lR  220 (220)
T TIGR00384       158 EFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCTTCMNCSEVCPKGVNPARAIEKLK  220 (220)
T ss_pred             CCcCHHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCccccccccccCCCCCHHHHHHHhC
Confidence            699999999999999888875555666545445689999999999999999999999999886

Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.

>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated

Probab=100.00  E-value=1.5e-53  Score=382.75  Aligned_cols=222  Identities=24%  Similarity=0.478  Sum_probs=178.3

Q ss_pred             eeEEEEEeeCCCCCCCCceEEEEEe-ccCCCchHHHHHHHcccCC----CCCccccCCCCCCccCeeEEEECCee-----
Q 023670           47 TKKFQIYRWNPDSPSKPELKEFEIN-LKECGPMVLDALIKIKSEI----DPSLTFRRSCREGICGSCAMNIDGCN-----  116 (279)
Q Consensus        47 ~~~~~i~R~~p~~~~~~~~~~~~v~-~~~~g~tvLdal~~~~~~~----dptl~~~~~c~~g~CG~C~v~inG~~-----  116 (279)
                      .++|+|||||| .+.+||||+|+|+ +++ ++||||||.+|++++    +++|+||+|||+|+||||+|+|||++     
T Consensus         2 ~~~~~i~R~~~-~~~~~~~q~y~v~~~~~-~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~ING~p~~~~~   79 (250)
T PRK07570          2 KLTLKIWRQKG-PDDKGKFETYEVDDISP-DMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVINGRPHGPDR   79 (250)
T ss_pred             eEEEEEEecCC-CCCCceeEEEEecCCCC-CCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEECCccCCCCc
Confidence            47899999996 4678999999999 787 899999999997543    35699999999999999999999999     


Q ss_pred             -eccccccccCC--CCceEEeeCC--CCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhccccc
Q 023670          117 -GLACLTKISPS--GSASTITPLP--HMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYE  191 (279)
Q Consensus       117 -~lAC~t~v~~g--~~~~~iepl~--~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~  191 (279)
                       +|||+|.+.+.  +++++||||+  +||||||||||++.| ++++.++||+.++.....++.+.+|++++++.+.+...
T Consensus        80 ~~LAC~t~~~~~~~~~~i~iePl~~~~fpvikDLvVD~~~~-~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (250)
T PRK07570         80 GTTTCQLHMRSFKDGDTITIEPWRAAAFPVIKDLVVDRSAL-DRIIQAGGYVSVNTGGAPDANAIPVPKEDADRAFDAAA  158 (250)
T ss_pred             ccchhhhhhhhcCCCCeEEEEECCCCCCCeeeeceeecHHH-HHHHhcCCeEecCCCCCCCccccCCCHHHHHhhhCccc
Confidence             89999999742  4689999999  999999999999996 89999999998653221123467899999999999999


Q ss_pred             CcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhH---HHHHHHhhcccCccCchhhhhhhhhCCCCCChHHH
Q 023670          192 CILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYT---KERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQ  268 (279)
Q Consensus       192 CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~---~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~  268 (279)
                      ||+||.|+++||++..  +.|+||+. ..+ ++....++...   ..++..+ +..++|.|++||+|+++||+||++ ..
T Consensus       159 CI~CG~C~saCP~~~~--~~f~Gp~~-~~~-~l~p~~~~~r~~~~~~~~~~~-~~~gv~~C~~Cg~Cs~VCPk~I~~-~~  232 (250)
T PRK07570        159 CIGCGACVAACPNGSA--MLFTGAKV-SHL-ALLPQGQPERARRVRAMVAQM-DEEGFGNCTNTGECEAVCPKGISL-EN  232 (250)
T ss_pred             cCCCcccccccCCccc--ccccchhh-hhh-hhCcccchhHHHHHHHHHHHH-hccCcccCcccCccccccCCCCCH-HH
Confidence            9999999999999863  46999865 333 33322222111   1122222 336899999999999999999998 47


Q ss_pred             HHHHHHHHH
Q 023670          269 IINIKQLQL  277 (279)
Q Consensus       269 I~~lR~~~~  277 (279)
                      |..+++.++
T Consensus       233 I~~l~r~~~  241 (250)
T PRK07570        233 IARMNREYL  241 (250)
T ss_pred             HHHHHHHHH
Confidence            777776654

>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional

Probab=100.00  E-value=9.2e-44  Score=347.64  Aligned_cols=214  Identities=36%  Similarity=0.676  Sum_probs=191.6

Q ss_pred             eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC
Q 023670           47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP  126 (279)
Q Consensus        47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~  126 (279)
                      +++|+||||||+.+ .||||+|+|++++ |+||||||++++.+++|+|+|+.+|+.|+||+|.|+|||+++|||+|++.+
T Consensus         3 ~~~~~i~r~~~~~~-~~~~~~~~v~~~~-~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~~~   80 (486)
T PRK06259          3 MITITVKRFDPEKD-EPHFESYEVPVKE-GMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTINGEPVLACKTEVED   80 (486)
T ss_pred             eEEEEEEecCCCCC-CceeEEEEEeCCC-CChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEECCeEecccccCCCC
Confidence            68999999999998 8999999999998 999999999999777999999999999999999999999999999999997


Q ss_pred             CCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcc
Q 023670          127 SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYW  206 (279)
Q Consensus       127 g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~  206 (279)
                      |   ++|+|++ +|+++|||+|.+.|+.+++.+++|+.++.       +.++++++.+.++++..||+||.|.++||++.
T Consensus        81 ~---~~i~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~  149 (486)
T PRK06259         81 G---MIIEPLD-FPVIKDLIVDREPYYKKLKSLRNYLQRKN-------EKITYPEDIEDIKKLRGCIECLSCVSTCPARK  149 (486)
T ss_pred             C---CEEEecC-CcchhccccccHHHHHHHHhhcCCCCCCc-------cCCCCHHHHHHHhCchhcccCccccccCCCCc
Confidence            5   8999999 99999999999999999999999987542       34578899999999999999999999999997


Q ss_pred             cCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCCh-HHHHHHHHHHHHh
Q 023670          207 WTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNP-GKQIINIKQLQLK  278 (279)
Q Consensus       207 ~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~-~~~I~~lR~~~~~  278 (279)
                      .  ++|.||+++..++++..+++++.  +++.... ..++|.|++||+|..+||+||++ .++|..+|+.+.+
T Consensus       150 ~--~~~~gp~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~C~~C~~C~~~CP~gi~~~~~~i~~~R~~~~~  217 (486)
T PRK06259        150 V--SDYPGPTFMRQLARFAFDPRDEG--DREKEAF-DEGLYNCTTCGKCVEVCPKEIDIPGKAIEKLRALAFK  217 (486)
T ss_pred             c--ccCcCHHHHHHHHHHhhCCcchh--hHHHHHh-cCCCcCCCCcCcccCcCCCCCCchHHHHHHHHHHHHH
Confidence            5  57999999999998888877653  2333222 24799999999999999999998 9999999988764

>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B

Probab=100.00  E-value=1.7e-38  Score=251.04  Aligned_cols=105  Identities=50%  Similarity=0.889  Sum_probs=91.1

Q ss_pred             EEEEEeeCCCCC-CCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCC
Q 023670           49 KFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPS  127 (279)
Q Consensus        49 ~~~i~R~~p~~~-~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g  127 (279)
                      ||+||||||+.+ .+||||+|+|++++ ++||||||.+|++++||+|+|+++|++|+||+|+|+|||+++|||+|++.+.
T Consensus         1 t~~I~R~~~~~~~~~~~~~~y~v~~~~-~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC~t~v~~~   79 (110)
T PF13085_consen    1 TLRIFRFDPESDEGEPYYQEYEVPVEP-GMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLACKTQVDDL   79 (110)
T ss_dssp             EEEEEE--TTSTTSS-EEEEEEEEGGS-TSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGGGSBGGGC
T ss_pred             CEEEEEcCCCCCCCCCeEEEEEecCCC-CCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecceeeEchhc
Confidence            699999999886 49999999999998 9999999999999999999999999999999999999999999999999975


Q ss_pred             C----CceEEeeCCCCcchhhhhhccchhhh
Q 023670          128 G----SASTITPLPHMFVIKDLVVDMTNFYN  154 (279)
Q Consensus       128 ~----~~~~iepl~~~~vikDLvvD~~~~~~  154 (279)
                      .    +.++||||++|||||||+||++.||+
T Consensus        80 ~~~~~~~i~IePL~~fpVirDLvVD~~~f~e  110 (110)
T PF13085_consen   80 IEKFGNVITIEPLPNFPVIRDLVVDMSPFFE  110 (110)
T ss_dssp             TTSETBEEEEEESTTSBEEETTEEETHHHHH
T ss_pred             cCCCcceEEEEECCCCCcceeCceeChHHcC
Confidence            3    35999999999999999999999985

...

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]

Probab=99.84  E-value=7e-23  Score=201.95  Aligned_cols=178  Identities=21%  Similarity=0.308  Sum_probs=115.1

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECCeeeccccccccCCCC----ceEEeeCCCCcchhh
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDGCNGLACLTKISPSGS----ASTITPLPHMFVIKD  144 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG~~~lAC~t~v~~g~~----~~~iepl~~~~vikD  144 (279)
                      +++++ |+|||+||++.+ .++|+|||+.+- +.+.|.+|.|+|||+.+.||+|++++|..    +.+|..++  ...-|
T Consensus        15 ~~v~~-G~tiL~a~~~~g-I~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t~s~rvk~~r--~~~md   90 (978)
T COG3383          15 IEVEE-GTTILRAANRNG-IEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRTNSERVKEAR--REAMD   90 (978)
T ss_pred             EecCC-ChHHHHHHHhcC-CcccceeccCCCCcccccceEEEEecCceeccccccccCCcEEecccHHHHHHH--HHHHH
Confidence            45567 999999999999 479999999995 67999999999999999999999999832    22222222  12335


Q ss_pred             hhhccchhhh----------hhhccccccc-cCCCCCCCCC--CCCCChhhHhhhcccccCcccCcccCCCCCcccCCCc
Q 023670          145 LVVDMTNFYN----------QYKSIEPWLK-RKNPPPMPGK--EIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEA  211 (279)
Q Consensus       145 LvvD~~~~~~----------~~~~~~p~l~-~~~~~~~~~~--~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~  211 (279)
                      +++..|.+++          .++...-.+. .+..++-.++  .+..+...+..+++.++||+||+|+.+|...+.+.  
T Consensus        91 ~~l~nH~LyC~vCd~nnGdCelh~~~~~~gl~~q~y~y~~k~~~~~~Des~Pfy~ydp~qCIlCgRCVeaCqevqv~e--  168 (978)
T COG3383          91 RILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPYEEKNPPYPKDESNPFYIYDPNQCILCGRCVEACQEVQVNE--  168 (978)
T ss_pred             HHHhcCCcCccccCCCCCCchHHHHHHHhCCCccccCccccCCCCCcccCCCeEEecchheeehhHHHHHHHhhhcee--
Confidence            5555555554          3333322222 1222221222  23333334567789999999999999999776542  


Q ss_pred             ccCHHHHHHHHHHhhcCcchhHHHHHHHh-hcccCccCchhhhhhhhhCCCCCChH
Q 023670          212 YLGPAALLHANRWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPG  266 (279)
Q Consensus       212 ~~gP~~l~~a~r~~~d~r~~~~~erl~~l-~~~~~~~~C~~Cg~C~~vCP~gi~~~  266 (279)
                      .++           .+.+.+.  .|+.+. ......+.|++||+|++|||+++-..
T Consensus       169 aL~-----------i~w~~~~--pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALme  211 (978)
T COG3383         169 ALT-----------IDWRGED--PRVIWDNDVPINESSCVSCGACVTVCPVNALME  211 (978)
T ss_pred             EEE-----------eecccCC--cceecCCCCccccccccccCccceecchhhhhh
Confidence            111           1111111  133222 23457799999999999999987443

>PRK08493 NADH dehydrogenase subunit G; Validated

Probab=99.83  E-value=1.9e-21  Score=199.05  Aligned_cols=132  Identities=17%  Similarity=0.231  Sum_probs=86.1

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEECCeeeccccccccCCCCce----EEeeCCCCcchhh
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDGCNGLACLTKISPSGSAS----TITPLPHMFVIKD  144 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~inG~~~lAC~t~v~~g~~~~----~iepl~~~~vikD  144 (279)
                      |++++ |+|||+|++++| ..+|+|||+.+|. .|.||+|+|+|||++++||.|++.+|....    .+...|  ..+-.
T Consensus        11 v~~~~-G~til~aa~~~g-i~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~dGM~V~T~s~~v~~~R--k~vle   86 (819)
T PRK08493         11 CEAQE-GEYILNVARRNG-IFIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKAKEGMNILTNTPNLMDER--NAIMQ   86 (819)
T ss_pred             EEeCC-CCHHHHHHHHcC-CccccccccCCCCCCccccceEEEECCEEeccccCCCCCCCEEEecCHHHHHHH--HHHHH
Confidence            45557 999999999998 4799999999996 599999999999999999999999883222    222222  22333


Q ss_pred             hhhccchhhh---------hhhccccccccC-CCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcc
Q 023670          145 LVVDMTNFYN---------QYKSIEPWLKRK-NPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYW  206 (279)
Q Consensus       145 LvvD~~~~~~---------~~~~~~p~l~~~-~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~  206 (279)
                      |++..+++.+         .||.+.-++... .+++....... .+......++.++||.||+|+++|+..+
T Consensus        87 ~ll~~HpldC~~Cd~~geCeLQ~~a~~~gv~~~~~~~~~~~~~-~~~~~~I~~D~~rCI~C~RCVr~C~ev~  157 (819)
T PRK08493         87 TYDVNHPLECGVCDKSGECELQNFTHEMGVNHQPYAIKDTHKP-HKHWGKINYDPSLCIVCERCVTVCKDKI  157 (819)
T ss_pred             HHHhccCCCCCcCCCCCCcHHHHHHHHhCCCCCcCcccccccc-ccCCCcEEechhhcccccHHHhhCcccc
Confidence            4444444432         355544333221 11110001111 1112245578999999999999999765

>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional

Probab=99.83  E-value=7.8e-22  Score=178.55  Aligned_cols=134  Identities=13%  Similarity=0.136  Sum_probs=88.2

Q ss_pred             Eec-cCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECCe--eeccccccccCCC----CceEEeeCCCCcc
Q 023670           70 INL-KECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDGC--NGLACLTKISPSG----SASTITPLPHMFV  141 (279)
Q Consensus        70 v~~-~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG~--~~lAC~t~v~~g~----~~~~iepl~~~~v  141 (279)
                      |++ ++ |+|||||++++| ..+|+|||+... ..|.|+.|+|+|+|+  .+.||.|++.+|.    ++.++...|  +.
T Consensus        78 VeV~~~-G~TILeAAr~~G-I~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~T~Se~v~~~R--k~  153 (297)
T PTZ00305         78 VEIIPQ-EENLLEVLEREG-IRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSIITDSRLVRDAR--EG  153 (297)
T ss_pred             EEecCC-CChHHHHHHHcC-CCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEEeCCHHHHHHH--HH
Confidence            455 56 899999999999 579999999997 579999999999996  5679999999983    333333333  23


Q ss_pred             hhhhhhccchhhh---------hhhccccccccC-CCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCccc
Q 023670          142 IKDLVVDMTNFYN---------QYKSIEPWLKRK-NPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWW  207 (279)
Q Consensus       142 ikDLvvD~~~~~~---------~~~~~~p~l~~~-~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~  207 (279)
                      +-.|++..++..+         +||.+.-++... .+++...+.......+.....++++||+||+|+++|...+.
T Consensus       154 vLElLLs~Hp~DC~~C~k~G~CeLQdla~~~Gv~~~Rf~~~~~~~~~~~~~p~i~~D~nKCIlCgRCVRaC~EVqg  229 (297)
T PTZ00305        154 NVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKEDKRAVQDFYFDPQTRVVLNRCIHCTRCVRFLNEHAQ  229 (297)
T ss_pred             HHHHHHhcCCCcCCcccCcCCcHHHHHHHHhCCCCccCCcccccccccCCCCceeecCCcCcCccHHHHHHHHhhC
Confidence            4455555555432         466655443322 22211111111111223344678999999999999998763

>PRK09130 NADH dehydrogenase subunit G; Validated

Probab=99.79  E-value=1.4e-20  Score=190.92  Aligned_cols=175  Identities=14%  Similarity=0.145  Sum_probs=106.9

Q ss_pred             EEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECCe---eeccccccccCCC----CceEEeeCCCCc
Q 023670           69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDGC---NGLACLTKISPSG----SASTITPLPHMF  140 (279)
Q Consensus        69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG~---~~lAC~t~v~~g~----~~~~iepl~~~~  140 (279)
                      +|++++ |+|||||++++| ..+|+|||+... ..|.|++|+|+|+|.   ++.||.|++.+|.    ++..+...|  .
T Consensus        10 ~v~v~~-g~til~a~~~~g-i~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~v~T~s~~v~~~r--~   85 (687)
T PRK09130         10 EIEVPD-GYTLLQACEAAG-AEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMVIFTNTPMVKKAR--E   85 (687)
T ss_pred             EEEeCC-CCHHHHHHHHcC-CCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCEEEeCCHHHHHHH--H
Confidence            356667 999999999999 479999999986 569999999999986   6779999999983    222222222  2


Q ss_pred             chhhhhhccchhhh---------hhhccccccc-cCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCC
Q 023670          141 VIKDLVVDMTNFYN---------QYKSIEPWLK-RKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSE  210 (279)
Q Consensus       141 vikDLvvD~~~~~~---------~~~~~~p~l~-~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~  210 (279)
                      .+-++++..|+..+         .||++.-.+. ...++....+....+........++++||+|++|+++|-.....+ 
T Consensus        86 ~~le~ll~~Hp~dC~~C~~~g~C~Lq~~~~~~g~~~~r~~~~~~~~~~~~~~p~i~~~~~rCI~C~rCvr~c~ev~g~~-  164 (687)
T PRK09130         86 GVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRYHENKRAVEDKYMGPLVKTVMTRCIHCTRCVRFATEVAGVP-  164 (687)
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHhCCCCCCCCccccccCcCCCCCcEEEecccCCcccHHHHHHHhhcCCc-
Confidence            33344555555443         3554432222 222222111111111112234567899999999999998765321 


Q ss_pred             cccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          211 AYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       211 ~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                       -+|         +  .+|+..  .++....  .....|..||+|+++||+|+=
T Consensus       165 -~l~---------~--~~rg~~--~~i~~~~--~~~~~~~~~G~cv~~CPvgAl  202 (687)
T PRK09130        165 -ELG---------A--IGRGED--MEITTYL--EQALTSELSGNVIDLCPVGAL  202 (687)
T ss_pred             -eEE---------e--eecCCC--CEEccCC--CCCccccccccHHhhCCCccc
Confidence             111         1  122221  1111111  134468899999999999983

>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]

Probab=99.78  E-value=2.3e-20  Score=187.18  Aligned_cols=174  Identities=19%  Similarity=0.272  Sum_probs=103.5

Q ss_pred             EEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEECC--eeeccccccccCCCC----ceEEeeCCCCcc
Q 023670           69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG--CNGLACLTKISPSGS----ASTITPLPHMFV  141 (279)
Q Consensus        69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~inG--~~~lAC~t~v~~g~~----~~~iepl~~~~v  141 (279)
                      +|++++ |.|||+|++++| .++|+|||+..|. .|.||+|+|+|+|  +++.||.|++.+|..    +..+.-.+  .-
T Consensus        10 ei~v~~-g~tvLqAa~~aG-i~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~I~T~s~~vk~~R--~~   85 (693)
T COG1034          10 EIEVPE-GETVLQAAREAG-IDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMVISTNSEEVKKAR--EG   85 (693)
T ss_pred             EEecCC-CcHHHHHHHHcC-CCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCeEEecCCHHHHHHH--HH
Confidence            356667 899999999999 4799999999985 5999999999999  788999999999822    11111111  11


Q ss_pred             hhhhhhccchhhh---------hhhcccc-ccccCCCCCCCCCCCCCChhh-HhhhcccccCcccCcccCCCCCcccCCC
Q 023670          142 IKDLVVDMTNFYN---------QYKSIEP-WLKRKNPPPMPGKEIPQSKKD-RAKLDGMYECILCACCSTSCPSYWWTSE  210 (279)
Q Consensus       142 ikDLvvD~~~~~~---------~~~~~~p-~l~~~~~~~~~~~~~~~s~~~-~~~~~~~~~CI~CG~C~~~CP~~~~~~~  210 (279)
                      +-.+++..|++.+         .||++.- |-....++....+.+ ..++. .....++++||+|++|++.|-.+...  
T Consensus        86 vmE~LLiNHPlDCpiCD~gGeCeLQD~a~~~G~~~sr~~~~kr~~-~~~~~gp~v~~dm~RCI~C~RCVR~c~eiaG~--  162 (693)
T COG1034          86 VMEFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYRETKRTH-RDKDLGPLVKYDMNRCILCTRCVRFCKEIAGT--  162 (693)
T ss_pred             HHHHHHhcCCCCCCccCCCCCchhHHHHHHhCCCccccccccccc-ccccccchhhcccccceechhhHHhhhhhcCc--
Confidence            2344455556554         3444431 111122211011111 11111 12237899999999999999876532  


Q ss_pred             cccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          211 AYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       211 ~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                           ..+.    ++  +|++..  .+-...+  ..+.=..||+|+.+||+|+=
T Consensus       163 -----~~l~----~~--~rg~~~--~i~t~~~--~~l~se~cGncv~vCPvGAL  201 (693)
T COG1034         163 -----HELG----VI--KRGENS--EIGTYLD--QPLESELCGNCVDVCPVGAL  201 (693)
T ss_pred             -----cccc----ee--ecCCCc--eeecccc--cccccccccceeeecccccc
Confidence                 1111    11  122111  0101111  12222789999999999984

>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G

Probab=99.77  E-value=3.6e-20  Score=185.86  Aligned_cols=176  Identities=14%  Similarity=0.165  Sum_probs=107.9

Q ss_pred             EEEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECCe---eeccccccccCCCC----ceEEeeCCCC
Q 023670           68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDGC---NGLACLTKISPSGS----ASTITPLPHM  139 (279)
Q Consensus        68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG~---~~lAC~t~v~~g~~----~~~iepl~~~  139 (279)
                      .+|++++ |+|||+|++++|+ .+|+|||+... ..|.|+.|.|+|+|.   .+.||.|++.+|..    +.++.-.|  
T Consensus         6 ~~~~~~~-g~~il~a~~~~gi-~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~v~t~~~~~~~~r--   81 (603)
T TIGR01973         6 KELEVPK-GTTVLQACLSAGI-EIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMKISTNSEKVKKAR--   81 (603)
T ss_pred             EEEEeCC-CCHHHHHHHHcCC-CccccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCEEEeCCHHHHHHH--
Confidence            3466677 9999999999994 79999999986 479999999999995   57899999999832    22222222  


Q ss_pred             cchhhhhhccchhhh---------hhhccccccc-cCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCC
Q 023670          140 FVIKDLVVDMTNFYN---------QYKSIEPWLK-RKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTS  209 (279)
Q Consensus       140 ~vikDLvvD~~~~~~---------~~~~~~p~l~-~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~  209 (279)
                      ..+-+|++..|+..+         +||++.-.+. ...+++...+.............+.++||+||+|+++|-.....+
T Consensus        82 ~~~~e~ll~~h~~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~c~e~~g~~  161 (603)
T TIGR01973        82 EGVMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRFREKKRTVENKYLGPLIKTEMTRCIHCTRCVRFANEVAGVE  161 (603)
T ss_pred             HHHHHHHHhcCCCCCCcCCCCCCChHHHHHHHhCCCCCCCCcccccCCCCCCCCCeEecCCcCccccHHHHHHHHhhCCc
Confidence            233444554454432         4555432222 222222111112111123345678999999999999998654321


Q ss_pred             CcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          210 EAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       210 ~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                             +    +.+.  +|+..  .++...  ......|..||+|+++||+|+=
T Consensus       162 -------~----l~~~--~rg~~--~~i~~~--~~~~~~~~~cg~cv~vCP~GAl  199 (603)
T TIGR01973       162 -------D----LGVI--GRGNN--VEIGTY--EGKTLESELSGNLIDICPVGAL  199 (603)
T ss_pred             -------e----EEEe--ccCCC--CEEecC--CCCCCCCcccCChHhhCCcccc
Confidence                   1    1111  12211  111111  1133468899999999999983

This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.

>PRK07860 NADH dehydrogenase subunit G; Validated

Probab=99.75  E-value=1.5e-19  Score=186.37  Aligned_cols=185  Identities=16%  Similarity=0.225  Sum_probs=111.1

Q ss_pred             ceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCC-CCCCccCeeEEEECCee--eccccc
Q 023670           46 DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRS-CREGICGSCAMNIDGCN--GLACLT  122 (279)
Q Consensus        46 ~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~-c~~g~CG~C~v~inG~~--~lAC~t  122 (279)
                      .+++|.|   |-        ++  |++++ |+|||+|++.+|+ .+|+|||+.. ...|.|+.|.|+|||.+  +.||.|
T Consensus         3 ~~v~~~i---dg--------~~--~~~~~-g~til~aa~~~gi-~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t   67 (797)
T PRK07860          3 DLVTLTI---DG--------VE--VSVPK-GTLVIRAAELLGI-QIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTT   67 (797)
T ss_pred             ceEEEEE---CC--------EE--EEeCC-CChHHHHHHHcCC-CCCeecCCCCCCCCcccCccEEEECCCcccccccCC
Confidence            4677777   42        44  45567 9999999999984 7999999998 56899999999999964  569999


Q ss_pred             cccCCCCceE------EeeCCCCcchhhhhhccchhhh---------hhhcccccccc-CCCCCCCCCCCCCC-hhhHhh
Q 023670          123 KISPSGSAST------ITPLPHMFVIKDLVVDMTNFYN---------QYKSIEPWLKR-KNPPPMPGKEIPQS-KKDRAK  185 (279)
Q Consensus       123 ~v~~g~~~~~------iepl~~~~vikDLvvD~~~~~~---------~~~~~~p~l~~-~~~~~~~~~~~~~s-~~~~~~  185 (279)
                      ++.+|....+      +.-.+  ..+-+|++..|++.+         +||++.-.+.. ..++....+..... +.....
T Consensus        68 ~v~~gm~V~t~~~s~~v~~~r--~~~le~ll~~hp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i  145 (797)
T PRK07860         68 TVTDGMVVKTQLTSPVADKAQ--HGVMELLLINHPLDCPVCDKGGECPLQNQAMSNGRAESRFTDVKRTFPKPINISTQV  145 (797)
T ss_pred             CCCCCcEEEeCCCCHHHHHHH--HHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHHhCCCCccCccccccCCCCCCCCcce
Confidence            9999832221      12122  233344444444443         35554322221 11221001111100 111235


Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ..+.++||+|++|+++|-.....+  .++         +.  +|+..  .++...  ....+.|..||+|+++||+|+=
T Consensus       146 ~~d~~rCI~C~rCvr~c~ev~g~~--~l~---------~~--~rg~~--~~i~~~--~~~~~~~~~cG~cv~vCP~GAl  207 (797)
T PRK07860        146 LLDRERCVLCARCTRFSDQIAGDP--FID---------LQ--ERGAL--QQVGIY--EGEPFQSYFSGNTVQICPVGAL  207 (797)
T ss_pred             eecccccccCcHHHHHHHhhcCCc--EEE---------ee--ecCCC--CEEecC--CCCCcCccccCCchhhCCcccc
Confidence            578999999999999998764321  111         11  22211  111111  1134678899999999999984

>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated

Probab=99.74  E-value=1.7e-19  Score=161.13  Aligned_cols=177  Identities=21%  Similarity=0.342  Sum_probs=102.0

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCC-CCCCccCeeEEEECCee--eccccccccCCCCceEEee-CCC-Ccchhh
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRS-CREGICGSCAMNIDGCN--GLACLTKISPSGSASTITP-LPH-MFVIKD  144 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~-c~~g~CG~C~v~inG~~--~lAC~t~v~~g~~~~~iep-l~~-~~vikD  144 (279)
                      |++++ |.|||+|++++| ..+|++|++.+ |..|.||.|.|+|||..  ++||.|++.+|....+-.+ +.. ...+.+
T Consensus        13 ~~~~~-g~til~a~~~~g-i~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t~~~~~~~~rk~~l~   90 (234)
T PRK07569         13 VSARE-GETLLEAAREAG-IPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQTNTPRLQEYRRMIVE   90 (234)
T ss_pred             EEeCC-CCHHHHHHHHcC-CCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEECCHHHHHHHHHHHH
Confidence            45557 999999999998 47899999887 77899999999999964  5799999998732221111 111 123455


Q ss_pred             hhhccchhhh---------hhhccccccccC-CCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccC
Q 023670          145 LVVDMTNFYN---------QYKSIEPWLKRK-NPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLG  214 (279)
Q Consensus       145 LvvD~~~~~~---------~~~~~~p~l~~~-~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~g  214 (279)
                      |+.+.++..+         .++.+.-++... ..++........+........+.++||.||+|+.+||..... . .  
T Consensus        91 ~ll~~h~~~C~~C~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~d~s~~~i~~d~~kCi~Cg~Cv~aC~~i~~~-~-~--  166 (234)
T PRK07569         91 LLFAEGNHVCAVCVANGNCELQDLAIEVGMDHVRFPYLFPRRPVDISHPRFGIDHNRCVLCTRCVRVCDEIEGA-H-T--  166 (234)
T ss_pred             HHHHhccccCcccCCCCCcHHHHHHHHhCCCCcccCcccCCcccccCCCcEEeehhhCcCccHHHHHHHHhcCC-c-e--
Confidence            5555554432         344443332211 111100111111112233456779999999999999953211 0 0  


Q ss_pred             HHHHHHHHHHhhcCcchhHHHHHH-Hhhccc-CccCchhhhhhhhhCCCCC
Q 023670          215 PAALLHANRWISDSRDEYTKERLE-AIDDEF-KLYRCHTILNCARACPKGL  263 (279)
Q Consensus       215 P~~l~~a~r~~~d~r~~~~~erl~-~l~~~~-~~~~C~~Cg~C~~vCP~gi  263 (279)
                               +...++...  .++. .+.... ....|+.||.|+.+||+|+
T Consensus       167 ---------~~~~~~g~~--~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gA  206 (234)
T PRK07569        167 ---------WDVAGRGAK--SRVITDLNQPWGTSETCTSCGKCVQACPTGA  206 (234)
T ss_pred             ---------eeecccCCc--ceEeecCCccccccccccchHHHHHhCCCCc
Confidence                     000011100  0000 011001 2358999999999999987

>PRK09129 NADH dehydrogenase subunit G; Validated

Probab=99.74  E-value=2.7e-19  Score=184.20  Aligned_cols=175  Identities=16%  Similarity=0.178  Sum_probs=105.9

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECCee--eccccccccCCCCceE----EeeCCCCcch
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDGCN--GLACLTKISPSGSAST----ITPLPHMFVI  142 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG~~--~lAC~t~v~~g~~~~~----iepl~~~~vi  142 (279)
                      |++++ |+|||+|++++| .++|+|||+... +.|.|+.|.|+|||.+  +.||.|++.+|....+    +.-.|+  .+
T Consensus        11 ~~~~~-g~~il~a~~~~g-~~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~~gm~v~t~~~~~~~~r~--~~   86 (776)
T PRK09129         11 VEVPE-GSMVIEAADKAG-IYIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVTDGMKVFTRSEKALKAQK--SV   86 (776)
T ss_pred             EEeCC-CCHHHHHHHHcC-CCCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCCCCCEEEcCCHHHHHHHH--HH
Confidence            44467 999999999999 478999999986 5799999999999964  6799999999833222    222222  23


Q ss_pred             hhhhhccchhh---------hhhhcccccccc-CCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcc
Q 023670          143 KDLVVDMTNFY---------NQYKSIEPWLKR-KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAY  212 (279)
Q Consensus       143 kDLvvD~~~~~---------~~~~~~~p~l~~-~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~  212 (279)
                      -+|++..|+..         ++||++.-.+.. ..++....+.............+.++||+||+|+++|-.....+   
T Consensus        87 l~~ll~~h~~~C~~c~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCi~C~rCvr~c~ev~g~~---  163 (776)
T PRK09129         87 MEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTEEKRVVFDKDLGPLISTEMTRCIHCTRCVRFGQEIAGVM---  163 (776)
T ss_pred             HHHHHhcCCCCcccCCCCCCCHHHHHHHHhCCCCCccccccccCCccCCCcceeecccccccCcHHHHHHHHhcCCc---
Confidence            34444444433         356655433322 22221011111111122334568899999999999998764321   


Q ss_pred             cCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCCh
Q 023670          213 LGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNP  265 (279)
Q Consensus       213 ~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~  265 (279)
                          ++.    +.  +|+..  .++....  .....|..||+|+.+||+|+=.
T Consensus       164 ----~l~----~~--~rg~~--~~i~~~~--~~~~~~~~cg~cv~~CP~GAl~  202 (776)
T PRK09129        164 ----ELG----MM--GRGEH--SEITTYV--GKTVDSELSGNMIDLCPVGALT  202 (776)
T ss_pred             ----eee----ee--ccCCC--CEEcCCC--CCCccCcccCCchhhCCccccc
Confidence                111    11  22211  1121111  1344688999999999999843

>PRK08166 NADH dehydrogenase subunit G; Validated

Probab=99.66  E-value=1.2e-17  Score=173.50  Aligned_cols=173  Identities=14%  Similarity=0.159  Sum_probs=103.7

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEE-----CC--eeeccccccccCCCCceEEeeCC----
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNI-----DG--CNGLACLTKISPSGSASTITPLP----  137 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~i-----nG--~~~lAC~t~v~~g~~~~~iepl~----  137 (279)
                      +++++ |+|||+|++.+| ..+|++|++... ..|.|++|.|+|     +|  +.++||.|++.+|   +.|+--+    
T Consensus        11 ~~~~~-g~til~a~~~~g-i~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~~aC~~~v~~g---m~v~t~~~~~~   85 (847)
T PRK08166         11 YEVNG-ADNLLEACLSLG-IDIPYFCWHPALGSVGACRQCAVKQYQNPEDTRGRLVMSCMTPATDG---TFISIDDPEAK   85 (847)
T ss_pred             EEeCC-CCHHHHHHHHcC-CCCCccccCCCCCCCCccCCCeEEEeecCccCCCCcccCcCCCCCCC---CEEEeCCHHHH
Confidence            44457 899999999999 478999998876 469999999999     23  4678999999987   2332211    


Q ss_pred             -CCcchhhhhhccchhhh---------hhhcccccccc-CCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcc
Q 023670          138 -HMFVIKDLVVDMTNFYN---------QYKSIEPWLKR-KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYW  206 (279)
Q Consensus       138 -~~~vikDLvvD~~~~~~---------~~~~~~p~l~~-~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~  206 (279)
                       ....+-+|++..|+..+         .||++.-++.. ..++....+.+..+........++++||+||+|+++|..+.
T Consensus        86 ~~r~~~~e~ll~~hp~dc~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~d~~rCi~C~rCVr~c~e~~  165 (847)
T PRK08166         86 AFRASVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYA  165 (847)
T ss_pred             HHHHHHHHHHHhcCCCCCCccCCCCCchHHHHHHHhCCCCccCCCcCccccccCCCCceEecCCcCccccHHHHHHHhhc
Confidence             11223444444444433         35555433322 22221011111111122345678999999999999999775


Q ss_pred             cCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          207 WTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       207 ~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ...  .+|         +  .+++..  ..+...  ..+...|.+||+|+++||+|+=
T Consensus       166 g~~--~l~---------~--~~~~~~--~~~~~~--~~~~~~~~~~G~cv~vCP~GAl  206 (847)
T PRK08166        166 GGT--DLG---------V--YGAHDN--VYFGRP--EDGTLESEFSGNLVEVCPTGVF  206 (847)
T ss_pred             Ccc--eEE---------E--eecCce--eEecCC--CCCcccChhhCChHhhCCchhc
Confidence            321  121         1  122211  011101  1234578999999999999983

>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional

Probab=99.43  E-value=1.6e-13  Score=131.61  Aligned_cols=95  Identities=20%  Similarity=0.477  Sum_probs=74.5

Q ss_pred             CCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhh
Q 023670          177 PQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCA  256 (279)
Q Consensus       177 ~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~  256 (279)
                      .+++++....+.+..||+||.|..+||+|..++.++.||++.+.+++.+.+++...  +     .....+|.|++||+|+
T Consensus        10 ~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~~~~~--~-----~~~~~~~~C~~C~~C~   82 (407)
T PRK11274         10 RDTPEGEEAEAILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVT--E-----KTQLHLDRCLTCRNCE   82 (407)
T ss_pred             cCChhhhHhHHHHHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhccCccc--h-----hhccccccCccccchh
Confidence            44555555666788999999999999999887778999999888777766654211  1     1123589999999999


Q ss_pred             hhCCCCCChHHHHHHHHHHHHh
Q 023670          257 RACPKGLNPGKQIINIKQLQLK  278 (279)
Q Consensus       257 ~vCP~gi~~~~~I~~lR~~~~~  278 (279)
                      .+||+||++.++|..+|..+.+
T Consensus        83 ~~CP~~v~~~~li~~~r~~~~~  104 (407)
T PRK11274         83 TTCPSGVQYGRLLDIGRKVVEE  104 (407)
T ss_pred             hhCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999988876643

>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]

Probab=99.33  E-value=1.4e-12  Score=111.81  Aligned_cols=78  Identities=24%  Similarity=0.554  Sum_probs=61.5

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHH
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGK  267 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~  267 (279)
                      .+..|++||.|+++||+....   -++|+.+++..+.   +..    +   .+..+..+|.|++|+.|...||.|+++.+
T Consensus        37 ~l~~C~QCG~CT~sCPs~r~t---~y~pR~ii~~~~~---g~~----d---~il~~~~lW~C~tCytC~eRCPr~v~i~~  103 (195)
T COG1150          37 YLEGCYQCGTCTGSCPSGRFT---DYSPRKIIRKARL---GLV----D---LILSSESLWACVTCYTCTERCPRGVKIVE  103 (195)
T ss_pred             hHhHhhccCcccCCCCCcccC---CCCHHHHHHHHHc---ccH----H---HHhcCCcceeeeechhhhhhCCCCCCHHH
Confidence            456799999999999998653   3689888875543   111    1   12224579999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 023670          268 QIINIKQLQLK  278 (279)
Q Consensus       268 ~I~~lR~~~~~  278 (279)
                      +|..||+..++
T Consensus       104 vv~~lR~~a~k  114 (195)
T COG1150         104 VVKALRNIAVK  114 (195)
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C

Probab=99.28  E-value=5.6e-12  Score=104.64  Aligned_cols=76  Identities=24%  Similarity=0.500  Sum_probs=53.8

Q ss_pred             ccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHH
Q 023670          190 YECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQI  269 (279)
Q Consensus       190 ~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I  269 (279)
                      ..||+||.|+++||++...  . +.|+.+.+.   ..++...   +    +..+..+|.|++||.|..+||+||++.++|
T Consensus         2 ~~Ci~CG~C~~~CP~~~~~--~-~~~~~~~~~---~~~g~~~---~----~~~~~~~~~C~~Cg~C~~~CP~~i~~~~~i   68 (144)
T TIGR03290         2 KACYQCGTCTGSCPSGRRT--S-YRTRLIIRK---ALLGLKD---E----VISDDDLWMCTTCYTCQERCPRDVKITDII   68 (144)
T ss_pred             ccccCCCCCcCcCCCcccc--C-CCHHHHHHH---HHccchh---h----hccCCCCCcCcCcCchhhhcCCCCCHHHHH
Confidence            5799999999999987532  2 234444332   2222110   1    112247899999999999999999999999


Q ss_pred             HHHHHHHHh
Q 023670          270 INIKQLQLK  278 (279)
Q Consensus       270 ~~lR~~~~~  278 (279)
                      ..+|+.+++
T Consensus        69 ~~~R~~~~~   77 (144)
T TIGR03290        69 KALRNLAAK   77 (144)
T ss_pred             HHHHHHHHH
Confidence            999987654

The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.

>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]

Probab=99.20  E-value=1.1e-11  Score=117.37  Aligned_cols=82  Identities=22%  Similarity=0.515  Sum_probs=60.9

Q ss_pred             hhcccccCcccCcccCCCCCcccCC-----CcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhC
Q 023670          185 KLDGMYECILCACCSTSCPSYWWTS-----EAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARAC  259 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~~~CP~~~~~~-----~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vC  259 (279)
                      .+.....||+||+|..+||+|+..+     ..|.||.+.+...  +..+.+.          .....+.|+.||.|.++|
T Consensus       303 ~~re~L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~--~~~g~~~----------~~~~~~~c~lcg~C~evC  370 (459)
T COG1139         303 EFREALRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSP--ILGGYDA----------AGDLPYACSLCGACTEVC  370 (459)
T ss_pred             HHHHHHHhhcchHhhhcChhhhhccCeecccccCCcccceecc--hhcchhh----------ccccchhhccccCCCCcC
Confidence            3455678999999999999997533     4578887654321  1222111          123579999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHh
Q 023670          260 PKGLNPGKQIINIKQLQLK  278 (279)
Q Consensus       260 P~gi~~~~~I~~lR~~~~~  278 (279)
                      |+.|++.++|.++|+..++
T Consensus       371 Pv~Ipl~eli~~lR~~~~~  389 (459)
T COG1139         371 PVKIPLPELIRKLRRVAAE  389 (459)
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999987654

>TIGR00273 iron-sulfur cluster-binding protein

Probab=99.19  E-value=2.4e-11  Score=117.42  Aligned_cols=81  Identities=19%  Similarity=0.434  Sum_probs=61.5

Q ss_pred             hcccccCcccCcccCCCCCcccCC-----CcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTS-----EAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACP  260 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~-----~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP  260 (279)
                      +.+..+||+||.|..+||+|...+     ..|.||++.+...  +.++..        ..  ....+.|+.||.|..+||
T Consensus       289 ~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~--~~~g~~--------~~--~~~~~~C~~Cg~C~~vCP  356 (432)
T TIGR00273       289 FREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSP--LLGGYT--------DY--KHLPYLSSLCGACREVCP  356 (432)
T ss_pred             hhhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHH--Hhcccc--------cc--cccCccchhhhhhhccCC
Confidence            667889999999999999997432     3588998765321  222211        01  124689999999999999


Q ss_pred             CCCChHHHHHHHHHHHHh
Q 023670          261 KGLNPGKQIINIKQLQLK  278 (279)
Q Consensus       261 ~gi~~~~~I~~lR~~~~~  278 (279)
                      +||++.++|..+|+.+++
T Consensus       357 ~gI~~~~li~~~R~~~~~  374 (432)
T TIGR00273       357 VKIPLPELIREHRSDKVE  374 (432)
T ss_pred             CCCcHHHHHHHHHHHHHh
Confidence            999999999999998764

Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.

>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit

Probab=99.18  E-value=4.2e-11  Score=99.41  Aligned_cols=86  Identities=19%  Similarity=0.285  Sum_probs=68.3

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCCC---c
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPHM---F  140 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~~---~  140 (279)
                      +.+++++++ ++++||+||+..    .-...+.+|.+|.||+|+|.|||+++.||.+++.  +|.+..+||+|...   .
T Consensus         9 ~~~~~~~~~-~~~Ll~~LR~~l----gltg~K~gC~~G~CGACtVlvdg~~v~SCl~~~~~~~G~~V~TiEgl~~~~~l~   83 (148)
T TIGR03193         9 RWREDAVAD-NMLLVDYLRDTV----GLTGTKQGCDGGECGACTVLVDGRPRLACSTLAHRVAGRKVETVEGLATNGRLS   83 (148)
T ss_pred             EEEEeecCC-CCcHHHHHHHhc----CCCCCCCCCCCCCCCCCEEEECCeEeeccHhhHhhcCCCcEEEeCCCCCCCCCC
Confidence            456778888 899999999843    1467889999999999999999999999999998  67788999999742   2


Q ss_pred             chhhhhhccchhhhhh
Q 023670          141 VIKDLVVDMTNFYNQY  156 (279)
Q Consensus       141 vikDLvvD~~~~~~~~  156 (279)
                      .++.-.++.+.+.+.|
T Consensus        84 pvq~af~~~~a~QCGf   99 (148)
T TIGR03193        84 RLQQAFHERLGTQCGF   99 (148)
T ss_pred             HHHHHHHHcCCCcCCC
Confidence            3555566666665544

4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.

>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional

Probab=99.16  E-value=1.4e-10  Score=101.73  Aligned_cols=86  Identities=24%  Similarity=0.413  Sum_probs=68.9

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC---Cc
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH---MF  140 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~---~~  140 (279)
                      +.+++++++ ++||||+|++...    -...+.+|++|.||+|.|.|||+++.||.+++.  +|.+..+||.|..   +.
T Consensus        59 ~~~~~~v~~-~~tLLd~LR~~l~----ltGtK~GC~~G~CGACTVlVdG~~v~SCl~la~~~~G~~ItTiEGL~~~~~lh  133 (217)
T PRK11433         59 KTEQLEVDT-RTTLLDALREHLH----LTGTKKGCDHGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLGSPDNLH  133 (217)
T ss_pred             EEEEEecCC-CCcHHHHHHHhcC----CCCCCCCCCCCCcCceEEEECCEEeeeeeeehhhcCCCEEEEeCCcCCCCCCC
Confidence            567788888 8999999998542    244667899999999999999999999999995  7888889999974   23


Q ss_pred             chhhhhhccchhhhhh
Q 023670          141 VIKDLVVDMTNFYNQY  156 (279)
Q Consensus       141 vikDLvvD~~~~~~~~  156 (279)
                      .++.-.++.+.+.+.|
T Consensus       134 pvQ~Af~~~~a~QCGy  149 (217)
T PRK11433        134 PMQAAFVKHDGFQCGY  149 (217)
T ss_pred             HHHHHHHHcCCCcCCC
Confidence            3566667777776654

>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.15  E-value=2.9e-11  Score=91.15  Aligned_cols=58  Identities=29%  Similarity=0.527  Sum_probs=42.9

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCcccc----CC-CCCCccCeeEEEECCee-eccccccccCC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFR----RS-CREGICGSCAMNIDGCN-GLACLTKISPS  127 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~----~~-c~~g~CG~C~v~inG~~-~lAC~t~v~~g  127 (279)
                      +.|++.  + |.|||+||.++| ..+|++|+.    .. |..|.|+.|.|+|||++ ++||.|++.+|
T Consensus        11 ~~v~~~--~-G~til~al~~~g-i~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~G   74 (82)
T PF13510_consen   11 KPVEVP--P-GETILEALLAAG-IDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDG   74 (82)
T ss_dssp             EEEEEE--E-T-BHHHHHHHTT---B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TT
T ss_pred             EEEEEc--C-CCHHHHHHHHCC-CeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCC
Confidence            555554  6 899999999999 478999997    44 89999999999999987 89999999987

>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional

Probab=99.15  E-value=4.1e-11  Score=114.43  Aligned_cols=80  Identities=26%  Similarity=0.487  Sum_probs=59.5

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHH-HHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChH
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALL-HANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPG  266 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~-~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~  266 (279)
                      .+..||+||.|.++||+|..+ ..|.||..+. +..++..+  +.        .....+++.|+.||.|..+||.+|++.
T Consensus         5 ~~~~Ci~Cg~C~~~CP~~~~~-~~~~g~~~~~~~~~~~~~~--~~--------~~~~~~~~~C~~C~~C~~~CP~~i~~~   73 (396)
T PRK11168          5 SFDSCIKCTVCTTACPVARVN-PLYPGPKQAGPDGERLRLK--DG--------ALYDESLKYCSNCKRCEVACPSGVKIG   73 (396)
T ss_pred             chhhcCCCCCCCccCCCcccC-CCCCChhhhccHHHHHhcc--ch--------hhcCCCCCcCcCcCccCcccCCCCCHH
Confidence            467899999999999999865 4477876542 22222111  10        111347899999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 023670          267 KQIINIKQLQLK  278 (279)
Q Consensus       267 ~~I~~lR~~~~~  278 (279)
                      ++|.++|..+.+
T Consensus        74 ~~i~~~r~~~~~   85 (396)
T PRK11168         74 DIIQRARAKYVT   85 (396)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987654

>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional

Probab=99.12  E-value=1.9e-10  Score=96.49  Aligned_cols=85  Identities=16%  Similarity=0.318  Sum_probs=68.5

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC---Cc
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH---MF  140 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~---~~  140 (279)
                      +.+++++++ +++|||+||+.+     -...+.+|..|.||+|+|.|||+++.||.+++.  +|.+..|||.|..   ..
T Consensus        16 ~~~~~~~~~-~~~Ll~~LR~~g-----ltgtK~GC~~G~CGACtVlvdg~~v~SCl~~a~~~~G~~V~TiEGl~~~~~l~   89 (159)
T PRK09908         16 MPFQLHAAP-GTPLSELLREQG-----LLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLS   89 (159)
T ss_pred             EEEEEecCC-CCcHHHHHHHcC-----CCCCCCCcCCCCCCCcEEEECCcEeehhHhhHHHhCCCEEEeecCCCCCCCCC
Confidence            567788888 899999999853     245788999999999999999999999999998  6788889999974   22


Q ss_pred             chhhhhhccchhhhhh
Q 023670          141 VIKDLVVDMTNFYNQY  156 (279)
Q Consensus       141 vikDLvvD~~~~~~~~  156 (279)
                      .|+.-.+|.+.+.+.|
T Consensus        90 pvQ~Af~~~~a~QCGy  105 (159)
T PRK09908         90 HVQQAYAKSGAVQCGF  105 (159)
T ss_pred             HHHHHHHHcCCCcCCC
Confidence            3556666776666644

>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]

Probab=99.05  E-value=3.4e-10  Score=94.26  Aligned_cols=86  Identities=22%  Similarity=0.412  Sum_probs=69.9

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCCC----
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPHM----  139 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~~----  139 (279)
                      +.+++++++ ++++||+||+...    --..+.+|..|.||+|+|.|||+++.||.+++.  +|.+..|||.|.+.    
T Consensus        11 ~~~~~~~~p-~~~Ll~~LRd~l~----ltgtk~GC~~g~CGACtVlvDG~~v~SCl~~a~~~~G~~ItTiEGl~~~~~~l   85 (156)
T COG2080          11 EPVELDVDP-RTPLLDVLRDELG----LTGTKKGCGHGQCGACTVLVDGEAVNSCLTLAVQAEGAEITTIEGLAKKDGGL   85 (156)
T ss_pred             eEEEEEeCC-CChHHHHHHHhcC----CCCcCCCCCCccCCceEEEECCeEehHHHHHHHHhCCCeEEEeecccCCCCCc
Confidence            678899998 8999999997542    234677899999999999999999999999998  78888899999842    


Q ss_pred             cchhhhhhccchhhhhh
Q 023670          140 FVIKDLVVDMTNFYNQY  156 (279)
Q Consensus       140 ~vikDLvvD~~~~~~~~  156 (279)
                      ..++.-.++.+.+.+.|
T Consensus        86 ~~vQ~Af~e~~~~QCGy  102 (156)
T COG2080          86 HPVQQAFLEHDAFQCGY  102 (156)
T ss_pred             CHHHHHHHHcCCCcCCC
Confidence            33566667777777655

>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit

Probab=99.03  E-value=1.8e-10  Score=110.20  Aligned_cols=78  Identities=27%  Similarity=0.480  Sum_probs=56.2

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhh---cccCccCchhhhhhhhhCCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAID---DEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~---~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      .+..||+||.|.++||+|..+ +.|.||....        .++    .++....   -...++.|+.|+.|..+||+||+
T Consensus         3 ~~~~Ci~Cg~C~~~Cp~~~~~-~~~~g~~~~~--------~~~----~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~i~   69 (397)
T TIGR03379         3 SFESCIKCTVCTVYCPVAKAN-PLYPGPKQAG--------PDG----ERLRLKSAELYDEALKYCTNCKRCEVACPSDVK   69 (397)
T ss_pred             chhhCCCCCCCcccCcCcccc-CCccCcccCC--------cHH----HHHhcccchhcccccccCcCcCccchhcCCCCC
Confidence            357899999999999999865 3466654310        000    1111000   11368999999999999999999


Q ss_pred             hHHHHHHHHHHHHh
Q 023670          265 PGKQIINIKQLQLK  278 (279)
Q Consensus       265 ~~~~I~~lR~~~~~  278 (279)
                      +.++|.++|..+.+
T Consensus        70 ~~~~i~~~R~~~~~   83 (397)
T TIGR03379        70 IGDIIARARNKYQK   83 (397)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988763

Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.95  E-value=1e-09  Score=111.56  Aligned_cols=56  Identities=29%  Similarity=0.453  Sum_probs=49.6

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCC-CCCCccCeeEEEECCee--eccccccccCC
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRS-CREGICGSCAMNIDGCN--GLACLTKISPS  127 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~-c~~g~CG~C~v~inG~~--~lAC~t~v~~g  127 (279)
                      |++++ |.|||+||+.+| ..+|+||++.. +..|.|+.|.|+|||.+  ++||+|++.+|
T Consensus        13 ~~~~~-g~ti~~a~~~~g-~~ip~~c~~~~~~~~g~C~~C~V~v~g~~~~~~aC~t~~~~G   71 (652)
T PRK12814         13 VTAAP-GTSILEAAASAG-ITIPTLCFHQELEATGSCWMCIVEIKGKNRFVPACSTAVSEG   71 (652)
T ss_pred             EEeCC-cCcHHHHHHHcC-CccccccCCCCCCCccccceeEEEECCCcceecCcCCCCCCC
Confidence            45567 999999999998 57999999876 78999999999999964  78999999987

>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]

Probab=98.93  E-value=7.8e-10  Score=104.85  Aligned_cols=84  Identities=27%  Similarity=0.520  Sum_probs=65.1

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChH
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPG  266 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~  266 (279)
                      ....+|++||.|..+||++..+  +..+|+..+...+.....+.... +.   +.  ..+|.|+.|++|+..||.+|++.
T Consensus         6 ~~~~~Cv~Cg~C~~~CP~~~~~--~~~sPrgr~~~~r~~~~~~~~~~-~~---~~--~~~~~C~~C~~C~~~CP~~i~~~   77 (388)
T COG0247           6 ESLDKCVHCGFCTNVCPSYRAT--EALSPRGRIVLVREVLRGKAPGD-EE---VY--EALDTCLACGACATACPSGIDIG   77 (388)
T ss_pred             HHHHhcCCCCcccCcCCCcccc--CCCCCchHHHHHHHHHhCCCcch-hh---hH--HHHHhCcCccchHhhCCCCCcHH
Confidence            3567899999999999999865  67888887776666554433211 11   11  25799999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 023670          267 KQIINIKQLQLK  278 (279)
Q Consensus       267 ~~I~~lR~~~~~  278 (279)
                      ++|..+|+...+
T Consensus        78 ~~~~~~r~~~~~   89 (388)
T COG0247          78 DLIREARRKLAK   89 (388)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>TIGR03198 pucE xanthine dehydrogenase E subunit

Probab=98.92  E-value=1.7e-09  Score=90.32  Aligned_cols=86  Identities=24%  Similarity=0.335  Sum_probs=67.1

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC--Ccc
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH--MFV  141 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~--~~v  141 (279)
                      +.+++++++ +.++|++|++...    -...+.+|..|.||+|.|.|||+++.||.+++.  +|.+..|||.|..  +..
T Consensus        11 ~~~~~~~~~-~~~Ll~~LR~~~~----ltgtK~gC~~G~CGACtVlvdG~~v~SCl~~~~~~~G~~v~TiEgl~~~~l~p   85 (151)
T TIGR03198        11 QAWEVAAVP-TTRLSDLLRKELQ----LTGTKVSCGIGRCGACSVLIDGKLANACLTMAYQADGHEITTIEGIAENELDP   85 (151)
T ss_pred             EEEEeecCC-CcHHHHHHHhccC----CCCCCCCCCCCcCCccEEEECCcEEechHHHHHHhcCCEEEecCCcCCCCCCH
Confidence            567788777 8999999998531    245677899999999999999999999999997  7888889999863  223


Q ss_pred             hhhhhhccchhhhhh
Q 023670          142 IKDLVVDMTNFYNQY  156 (279)
Q Consensus       142 ikDLvvD~~~~~~~~  156 (279)
                      ++.-.++.+.+.+.|
T Consensus        86 vQ~af~~~~a~QCGf  100 (151)
T TIGR03198        86 CQTAFLEEGGFQCGY  100 (151)
T ss_pred             HHHHHHHcCCCcCCC
Confidence            555556666655544

This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.

>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N

Probab=98.92  E-value=5.3e-10  Score=77.79  Aligned_cols=57  Identities=30%  Similarity=0.805  Sum_probs=26.4

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ++++||.||.|+++||++...             ..+....++... .   .+.+  ..|.|++||+|+.+||+||
T Consensus         1 d~~~Ci~Cg~C~~~CP~~~~~-------------~~~~~~~~~~~~-~---~~~~--~~~~C~~C~~C~~~CP~~I   57 (57)
T PF13183_consen    1 DLSKCIRCGACTSVCPVYRNT-------------GRFSHPPRDRRS-A---VLRE--EAWSCTTCGACSEVCPVGI   57 (57)
T ss_dssp             HHHC--S-SHHHHCSHHHHHH-------------HHHHTSTTS--H-H---HHHH--HHGG-----HHHHH-TT--
T ss_pred             CHHHccCccChHHHChhhhcc-------------cccccCcchhHH-H---hhcc--cccCCcCcCCccCcCcccc
Confidence            367899999999999966421             122222333211 1   1111  2399999999999999997

...

>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B

Probab=98.87  E-value=5.2e-10  Score=79.02  Aligned_cols=61  Identities=31%  Similarity=0.653  Sum_probs=31.9

Q ss_pred             cCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       191 ~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      +|+.||.|+.+||++..++.   -|..++..+.+  ...+.        +.+...++.|+.||.|..+||.|||
T Consensus         1 ~C~~Cg~C~~~CP~~~~~~~---~~~~~~~~~~~--~~~~~--------~~~~~~~~~C~~Cg~C~~~CP~~l~   61 (61)
T PF13534_consen    1 ACTQCGYCVPACPSYIATPD---EPRSPMRAIYL--GKIDE--------ISESHAASLCIGCGLCESVCPQGLD   61 (61)
T ss_dssp             T----STTGGGSHHHHHCTT---THHHHHHHHHH--CHCHT--------THHHTTTTT--S--HHHHH-TT---
T ss_pred             CCCCCCcCcccCCCccccCc---cHHHHHHHHHH--hcchh--------hhhCcccccCcCcCcCcccccCCCc
Confidence            59999999999999876532   26665554443  11111        1112478999999999999999986

...

>PRK15055 anaerobic sulfite reductase subunit A; Provisional

Probab=98.72  E-value=6.4e-09  Score=97.69  Aligned_cols=36  Identities=17%  Similarity=0.301  Sum_probs=32.4

Q ss_pred             ccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670          243 EFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK  278 (279)
Q Consensus       243 ~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~  278 (279)
                      ..+.+.|+.||+|..+||++|++.++|..+|+.+.+
T Consensus       303 ~~g~~~CvgCGrC~~~CP~~I~i~~~i~~lr~~~~~  338 (344)
T PRK15055        303 RFGYHMCVGCGRCDDRCPEYISFSNCINKLTDAVEE  338 (344)
T ss_pred             ccchhhCcCcCccccccCCCCCHHHHHHHHHHHHHH
Confidence            347789999999999999999999999999987754

>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]

Probab=98.59  E-value=1.1e-08  Score=98.53  Aligned_cols=58  Identities=19%  Similarity=0.333  Sum_probs=51.0

Q ss_pred             EEEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECC--eeeccccccccCC
Q 023670           68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDG--CNGLACLTKISPS  127 (279)
Q Consensus        68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG--~~~lAC~t~v~~g  127 (279)
                      |.|-+++ |+|||+|...+| -.+|.||||..- -.|.|++|.|+|+.  +++.||..++-.|
T Consensus        40 ~~v~v~p-g~tvlqac~~~g-v~iprfcyh~rlsvagncrmclvevekspkpva~campvm~g  100 (708)
T KOG2282|consen   40 QSVMVEP-GTTVLQACAKVG-VDIPRFCYHERLSVAGNCRMCLVEVEKSPKPVAACAMPVMKG  100 (708)
T ss_pred             eeEeeCC-CcHHHHHHHHhC-CCcchhhhhhhhhhccceeEEEEEeccCCCcchhhcccccCC
Confidence            4577778 999999999999 579999999975 45999999999998  6789999999877

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=98.57  E-value=5.7e-08  Score=94.39  Aligned_cols=75  Identities=21%  Similarity=0.355  Sum_probs=53.9

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChH
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPG  266 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~  266 (279)
                      .....||.||.|+.+||...       .|..+.++..   ..+.    +.   . ...+.+.|+.||.|..+||.++++.
T Consensus       360 ~~~~~Ci~Cg~C~~vCP~~l-------~p~~l~~~~~---~~~~----~~---~-~~~~~~~C~~Cg~C~~vCP~~i~l~  421 (435)
T TIGR01945       360 SPEKPCIRCGKCVQVCPMNL-------LPQQLNWLAL---ADEF----DE---A-EEHNLMDCIECGCCSYVCPSNIPLV  421 (435)
T ss_pred             ccCCcCcCccchhhhCccch-------hhHHHHHHhh---hccc----ch---h-hcCCCCcCCcCCCcccccCCCCCHH
Confidence            34579999999999999753       2333333211   1110    11   1 1246799999999999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 023670          267 KQIINIKQLQLKR  279 (279)
Q Consensus       267 ~~I~~lR~~~~~~  279 (279)
                      +.|...|+++.++
T Consensus       422 ~~ir~~k~~l~~~  434 (435)
T TIGR01945       422 QYIRQAKAKLRAK  434 (435)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>PRK09800 putative hypoxanthine oxidase; Provisional

Probab=98.52  E-value=1e-07  Score=100.39  Aligned_cols=85  Identities=21%  Similarity=0.229  Sum_probs=69.1

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCC-CCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC---C
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRS-CREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH---M  139 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~-c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~---~  139 (279)
                      +.+++++++ +++|||+||+.+     -.+.+.+ |..|.||+|+|.|||+++.||.+++.  +|.+..|||.|..   +
T Consensus        10 ~~~~~~~~~-~~~l~~~LR~~~-----~~~~k~g~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~   83 (956)
T PRK09800         10 APQELTVNP-GENVQKLLFNMG-----MHSVRNSDDGFGFAGSDAIIFNGNIVNASLLIAAQLEKADIRTAESLGKWNEL   83 (956)
T ss_pred             EEEEEecCC-CCCHHHHHHHCC-----CCccccCCCCcccCCCCEEEECCeEEeHHHHHHHHcCCCEEEecCCcCCCCCC
Confidence            566788888 899999999954     2456776 89999999999999999999999998  6788889999974   2


Q ss_pred             cchhhhhhccchhhhhh
Q 023670          140 FVIKDLVVDMTNFYNQY  156 (279)
Q Consensus       140 ~vikDLvvD~~~~~~~~  156 (279)
                      ..++.-.+|.+.+.+.|
T Consensus        84 ~~~q~af~~~~~~QCG~  100 (956)
T PRK09800         84 SLVQQAMVDVGVVQSGY  100 (956)
T ss_pred             CHHHHHHHHcCCCcCCC
Confidence            34666677777776654

>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit

Probab=98.50  E-value=1.3e-07  Score=99.79  Aligned_cols=85  Identities=20%  Similarity=0.215  Sum_probs=68.8

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccC-CCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC---C
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRR-SCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH---M  139 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~-~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~---~  139 (279)
                      +.+++++++ +++|||+||+.+     -.+.+. +|..|.||+|+|.|||+++.||.+++.  +|.+..|||.|..   +
T Consensus         6 ~~~~~~~~~-~~~l~~~LR~~~-----l~~~k~~~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tiegl~~~~~~   79 (951)
T TIGR03313         6 APQTLECKL-GENVQTLLFNMG-----MHSVRNSDDGFGFAGSDAILFNGVLKNASLLIAAQLEGAEVRTAESLGQWNQL   79 (951)
T ss_pred             EEEEEecCC-CCCHHHHHHHCC-----CCCCcCCCCCcccCCCCEEEECCeEeeHHHHHHHHcCCCEEEecCcCCCCCCC
Confidence            456788888 899999999953     234666 699999999999999999999999998  7888889999974   3


Q ss_pred             cchhhhhhccchhhhhh
Q 023670          140 FVIKDLVVDMTNFYNQY  156 (279)
Q Consensus       140 ~vikDLvvD~~~~~~~~  156 (279)
                      ..++.-.+|.+.+.+.|
T Consensus        80 ~~~q~af~~~~a~QCG~   96 (951)
T TIGR03313        80 SLVQQAMVDVGVVQSGY   96 (951)
T ss_pred             CHHHHHHHHcCCCcCCC
Confidence            34666677777777654

Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.

>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain

Probab=98.48  E-value=2.2e-07  Score=69.18  Aligned_cols=53  Identities=34%  Similarity=0.662  Sum_probs=42.5

Q ss_pred             EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC------------------CeeeccccccccC
Q 023670           67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID------------------GCNGLACLTKISP  126 (279)
Q Consensus        67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in------------------G~~~lAC~t~v~~  126 (279)
                      ..+|++++ |.|||++|+..+.      ....+|+.|.||+|.|+|.                  +..+|||.+.+.+
T Consensus         9 ~~~~~~~~-g~~ll~al~~~g~------~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~   79 (84)
T cd00207           9 GVEVEVPE-GETLLDAAREAGI------DIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTD   79 (84)
T ss_pred             CEEEEECC-CCcHHHHHHHcCC------CcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCC
Confidence            44566777 8999999999763      2557899999999999996                  4467899998863

Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.

>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated

Probab=98.47  E-value=1.7e-07  Score=95.59  Aligned_cols=76  Identities=18%  Similarity=0.303  Sum_probs=52.7

Q ss_pred             hhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          184 AKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       184 ~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +..+...+|+.||.|+.+||.....          ..+.+...++..    ..   +.  ...+.|+.||+|.++||+++
T Consensus       398 El~~eadrCI~CG~Cv~aCP~~l~i----------~~~I~~a~~G~~----~~---l~--~l~~~Ct~CG~CeeVCPtgI  458 (781)
T PRK00941        398 ELKELAKKCTECGWCVRVCPNELPI----------PEAMEAAAKGDL----SK---LE--DLYDKCIGCGRCEQVCPKNI  458 (781)
T ss_pred             HHHHhhhhCcCCCCccccCCCCcch----------hHHHHHHhcCCh----hh---hh--hhhhhccchhHHhhhCCCCC
Confidence            4455678999999999999964210          111122122111    11   11  13578999999999999999


Q ss_pred             ChHHHHHHHHHHHHh
Q 023670          264 NPGKQIINIKQLQLK  278 (279)
Q Consensus       264 ~~~~~I~~lR~~~~~  278 (279)
                      ++.++|..+|+.+++
T Consensus       459 pi~emi~~Ar~~~Vk  473 (781)
T PRK00941        459 PIVSMIEKAAQHRIK  473 (781)
T ss_pred             ChHHHHHHHHHHHHH
Confidence            999999999988774

>TIGR02910 sulfite_red_A sulfite reductase, subunit A

Probab=98.44  E-value=1.7e-07  Score=87.74  Aligned_cols=89  Identities=17%  Similarity=0.328  Sum_probs=57.0

Q ss_pred             ccccCcccCcccCCCCCcccC--CCcc---cCHHH---------HHHHHHHhh---cCcchhHHHHHH-Hh-------hc
Q 023670          188 GMYECILCACCSTSCPSYWWT--SEAY---LGPAA---------LLHANRWIS---DSRDEYTKERLE-AI-------DD  242 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~--~~~~---~gP~~---------l~~a~r~~~---d~r~~~~~erl~-~l-------~~  242 (279)
                      ...+||.||.|..+||+....  .+++   .|..+         +...+..+.   ..|... .+|+. .+       .+
T Consensus       218 ~~~rCi~C~~C~~~CPtC~Cf~i~D~~~~~~g~~geR~R~WDSC~~~~Ft~~agGhn~R~~~-~~R~R~r~~HKl~~~~~  296 (334)
T TIGR02910       218 YDSRCIACGRCNTVCPTCTCFSMQDVFYKDNPKAGERRRVWASCMVDGFTNMAGGHGFREKK-GQRMRFKVMHKVNDYKK  296 (334)
T ss_pred             HHhhCCcCccccccCCceEeeEEEEecccCCCCceEEEEEecccCCcchhhhcCCCCCCCCH-HHHHHHHHhhhcccccc
Confidence            357999999999999997541  1111   12111         000011112   234332 24443 11       23


Q ss_pred             ccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHH
Q 023670          243 EFKLYRCHTILNCARACPKGLNPGKQIINIKQLQL  277 (279)
Q Consensus       243 ~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~  277 (279)
                      ..+...|+.||+|.++||++||+.++|..||+++-
T Consensus       297 ~fG~~~CvgCGrC~~~CP~~idi~~~i~~i~~~~~  331 (334)
T TIGR02910       297 RNGYHMCVGCGRCDDICPEYISFSNCINKLTAAVR  331 (334)
T ss_pred             ccCccccCCcCchhhhCCCCCCHHHHHHHHHHHHh
Confidence            56788999999999999999999999999998764

Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=98.41  E-value=1.7e-07  Score=95.65  Aligned_cols=72  Identities=22%  Similarity=0.534  Sum_probs=50.7

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHH
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGK  267 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~  267 (279)
                      ....||.||.|+.+||...       .|..+..   + ....+.   +.   + ..++++.|+.||.|..+||.+|++..
T Consensus       368 ~e~~CI~CG~Cv~aCP~~l-------lP~~l~~---~-~~~~d~---~~---~-~~~~~~~CieCG~C~~vCPs~Iplv~  429 (695)
T PRK05035        368 PEQPCIRCGACADACPASL-------LPQQLYW---F-AKAEEH---DK---A-QEYNLFDCIECGACAYVCPSNIPLVQ  429 (695)
T ss_pred             chhhcCCcccHHHHCCccc-------hhhhHHH---h-hhcccc---ch---h-hhcChhhccccCcccccCCCCCcHHH
Confidence            4578999999999999763       2322222   1 111111   11   1 12467899999999999999999999


Q ss_pred             HHHHHHHHHH
Q 023670          268 QIINIKQLQL  277 (279)
Q Consensus       268 ~I~~lR~~~~  277 (279)
                      +|...|..+.
T Consensus       430 ~~r~aK~~i~  439 (695)
T PRK05035        430 YYRQAKAEIR  439 (695)
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA

Probab=98.41  E-value=3.3e-07  Score=93.35  Aligned_cols=76  Identities=17%  Similarity=0.295  Sum_probs=51.9

Q ss_pred             hhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          184 AKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       184 ~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +..+...+|+.||.|+.+||.....          ..+.....++..    +.   +.  ...+.|+.||+|+++||+++
T Consensus       359 el~~~~~kCI~CG~Cv~aCP~~l~i----------~e~i~~~~~G~~----~~---l~--~~~~~Ct~CG~C~evCP~gI  419 (731)
T cd01916         359 EFQELAAKCTDCGWCTRACPNSLRI----------KEAMEAAKEGDF----SG---LA--DLFDQCVGCGRCEQECPKEI  419 (731)
T ss_pred             HHHHhhhcCCCCCcccccCCCCCcH----------HHHHHHHhcCCh----hh---hh--hhHhhhhhhhHHhhhCCCCC
Confidence            3455678999999999999965210          111122222211    11   11  12578999999999999999


Q ss_pred             ChHHHHHHHHHHHHh
Q 023670          264 NPGKQIINIKQLQLK  278 (279)
Q Consensus       264 ~~~~~I~~lR~~~~~  278 (279)
                      ++.++|..+++..++
T Consensus       420 pi~~mi~~a~~~~vk  434 (731)
T cd01916         420 PIINMIEKAARERIK  434 (731)
T ss_pred             ChHHHHHHHHHHHHh
Confidence            999999999987653

ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.

>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit

Probab=98.38  E-value=4.5e-07  Score=88.85  Aligned_cols=86  Identities=19%  Similarity=0.383  Sum_probs=68.4

Q ss_pred             EEEEE-eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE----CC-----eeecccccccc--CCCCceEE
Q 023670           66 KEFEI-NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI----DG-----CNGLACLTKIS--PSGSASTI  133 (279)
Q Consensus        66 ~~~~v-~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i----nG-----~~~lAC~t~v~--~g~~~~~i  133 (279)
                      +.+++ ++++ ++|+||.||+...    -...+.+|.+|.||+|+|.|    ||     +++.||.+++.  +|.+..||
T Consensus         8 ~~~~~~~~~~-~~~ll~~lR~~~~----l~g~k~gC~~G~CGaCtv~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv   82 (467)
T TIGR02963         8 ETVTLSDVDP-TRTLLDYLREDAG----LTGTKEGCAEGDCGACTVVVGELVDGGKLRYRSVNACIQFLPSLDGKAVVTV   82 (467)
T ss_pred             EEEEeecCCC-CCCHHHHHHHhcC----CCCCCcccCCCCCCceEEEEEecCCCCcccceEEehhhhhHHhcCCCEEEec
Confidence            56678 6777 8999999998431    24578899999999999999    99     99999999998  78888999


Q ss_pred             eeCCC----Ccchhhhhhccchhhhhh
Q 023670          134 TPLPH----MFVIKDLVVDMTNFYNQY  156 (279)
Q Consensus       134 epl~~----~~vikDLvvD~~~~~~~~  156 (279)
                      |.|..    +..++.-.++.+.+.+.|
T Consensus        83 Egl~~~~~~l~~~q~a~~~~~~~QCG~  109 (467)
T TIGR02963        83 EDLRQPDGRLHPVQQAMVECHGSQCGF  109 (467)
T ss_pred             CCCCCCCCCCCHHHHHHHHcCCCcCCC
Confidence            99973    233566667777766644

Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and

>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit

Probab=98.38  E-value=3.8e-07  Score=93.02  Aligned_cols=75  Identities=19%  Similarity=0.349  Sum_probs=51.0

Q ss_pred             hhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          184 AKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       184 ~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...+...+|+.||.|..+||.....          .........+..    ..   +.  ...+.|+.||.|..+||++|
T Consensus       393 eLl~~~~kCI~CG~Cv~aCP~~l~i----------~e~i~~a~~G~l----~~---l~--~~~d~C~~CG~C~evCP~gI  453 (784)
T TIGR00314       393 ELMELANKCTQCGNCVRTCPNSLRV----------DEAMAHAQKGDL----SK---LE--QLEEQCYACGRCEQACPKNI  453 (784)
T ss_pred             HHhhhcccCCCcccchhhCCCCcch----------HHHHHHHhcCCc----cc---cc--cCHhhhhhhhHHhccCCCCC
Confidence            4455678999999999999975211          111111111111    01   11  12468999999999999999


Q ss_pred             ChHHHHHHHHHHHH
Q 023670          264 NPGKQIINIKQLQL  277 (279)
Q Consensus       264 ~~~~~I~~lR~~~~  277 (279)
                      ++.++|..+|+..+
T Consensus       454 pIvemI~~Ar~~~v  467 (784)
T TIGR00314       454 PIISMITKAGEDRL  467 (784)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999997654

Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=98.34  E-value=4e-07  Score=88.65  Aligned_cols=72  Identities=15%  Similarity=0.133  Sum_probs=55.0

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchh--hhhhhhhCCCCCChH
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHT--ILNCARACPKGLNPG  266 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~--Cg~C~~vCP~gi~~~  266 (279)
                      ...||+||.|+.+||..       +-|..+++++..    .+.   +..    +..+++.|..  ||.|+.+||..|++.
T Consensus       373 ~~~CI~Cg~C~~vCP~~-------L~P~~l~ra~~~----~d~---~~~----e~~~~~~C~EedCG~CsyVCPskipL~  434 (448)
T PRK05352        373 ERAMVPIGNYERVMPLD-------ILPTQLLRALIV----GDT---DEA----QALGALELDEEDLALCTFVCPGKYEYG  434 (448)
T ss_pred             CcceeecCcHhhcCCCC-------CCHHHHHHHHHc----CCH---HHH----HHcCchhcCccccCCCccCCCCCchHH
Confidence            45899999999999974       457666665432    221   111    1257999999  999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 023670          267 KQIINIKQLQLK  278 (279)
Q Consensus       267 ~~I~~lR~~~~~  278 (279)
                      +.|...+..+.+
T Consensus       435 q~iR~~k~~~~~  446 (448)
T PRK05352        435 PILRDGLDRIEK  446 (448)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1

Probab=98.33  E-value=6.1e-07  Score=93.76  Aligned_cols=83  Identities=19%  Similarity=0.305  Sum_probs=65.8

Q ss_pred             EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCCC--cchhh
Q 023670           69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPHM--FVIKD  144 (279)
Q Consensus        69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~~--~vikD  144 (279)
                      ++++++ +++|||+||+-..    -...+.+|..|.||+|+|.|||+++.||.+++.  +|.+..|||.|...  ..|+.
T Consensus         9 ~~~~~~-~~~l~~~lr~~~~----~~~~k~gc~~g~cgactv~~dg~~~~sc~~~~~~~~g~~i~T~egl~~~~~~~~q~   83 (848)
T TIGR03311         9 EVDVNE-EKKLLEFLREDLR----LTGVKNGCGEGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEGLTEREKDVYAW   83 (848)
T ss_pred             EeeCCC-CCcHHHHHHHhcC----CCcCCCCCCCCCCCCcEEEECCeEEehhhhhHHhcCCCEEEecCCCCCCCCCHHHH
Confidence            456667 8999999997421    235788999999999999999999999999998  67888899999742  23666


Q ss_pred             hhhccchhhhhh
Q 023670          145 LVVDMTNFYNQY  156 (279)
Q Consensus       145 LvvD~~~~~~~~  156 (279)
                      -.+|.+.+.+.|
T Consensus        84 a~~~~~~~qcG~   95 (848)
T TIGR03311        84 AFAKAGAVQCGF   95 (848)
T ss_pred             HHHHcCCCcCCC
Confidence            667777766644

Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.

>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions

Probab=98.29  E-value=1.4e-06  Score=64.28  Aligned_cols=42  Identities=29%  Similarity=0.584  Sum_probs=33.5

Q ss_pred             EEEEEeccCCCch-HHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC
Q 023670           66 KEFEINLKECGPM-VLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID  113 (279)
Q Consensus        66 ~~~~v~~~~~g~t-vLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in  113 (279)
                      +.++|++.+ |.+ |||||++.+.     +....+|+.|.||+|.|+|.
T Consensus         6 ~~~~~~~~~-~~~~ll~~~~~~~g-----i~i~~~C~~g~Cg~C~v~v~   48 (78)
T PF00111_consen    6 KGVTVEVPP-GETLLLDALERAGG-----IGIPYSCGGGGCGTCRVRVL   48 (78)
T ss_dssp             EEEEEEEET-TSBBHHHHHHHTTT-----TTSTTSSSSSSSSTTEEEEE
T ss_pred             eEEEEEeCC-CccHHHHHHHHcCC-----CCcccCCCCCccCCcEEEEe
Confidence            567777777 778 9999999731     33558899999999999975

Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....

>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]

Probab=98.26  E-value=8e-08  Score=82.00  Aligned_cols=59  Identities=25%  Similarity=0.494  Sum_probs=37.0

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcc-hhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRD-EYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~-~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+.+.||.|+.|..+||+....               +..+.+. ++. .+.. . -+....+|++||.|+++||+++
T Consensus        52 l~~~~CIgC~lCa~iCP~~aI~---------------m~~~~~~~~g~-~~~~-~-~~In~grCIfCg~C~e~CPt~A  111 (172)
T COG1143          52 LDRDKCIGCGLCANICPANAIT---------------METAERKVDGR-KKPK-R-PDINLGRCIFCGLCVEVCPTGA  111 (172)
T ss_pred             ccccCCcchhHHHhhCCcCceE---------------EEEcccCCCCc-cccc-c-ceeccccccccCchhhhCchhh
Confidence            3455699999999999975321               1111111 110 1111 1 1246789999999999999986

>CHL00134 petF ferredoxin; Validated

Probab=98.23  E-value=4.7e-06  Score=64.91  Aligned_cols=39  Identities=28%  Similarity=0.560  Sum_probs=32.3

Q ss_pred             EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE
Q 023670           67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI  112 (279)
Q Consensus        67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i  112 (279)
                      .+.+++++ |.||||||.+.|.      ....+|+.|.||+|.|.|
T Consensus        16 ~~~~~~~~-~~tLL~a~~~~Gi------~i~~~C~~G~Cg~C~v~v   54 (99)
T CHL00134         16 DVTIDCPD-DVYILDAAEEQGI------DLPYSCRAGACSTCAGKV   54 (99)
T ss_pred             eEEEEECC-CCcHHHHHHHcCC------CCCcCCCCccCCCCEEEE
Confidence            45566667 8999999999983      255789999999999997

>TIGR02008 fdx_plant ferredoxin [2Fe-2S]

Probab=98.20  E-value=6.1e-06  Score=63.96  Aligned_cols=38  Identities=29%  Similarity=0.529  Sum_probs=31.0

Q ss_pred             EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE
Q 023670           68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI  112 (279)
Q Consensus        68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i  112 (279)
                      ..+++++ |.||||||.+.|.      ....+|+.|.||+|.|.|
T Consensus        15 ~~~~~~~-g~tLLda~~~~Gi------~i~~~C~~G~Cg~C~v~v   52 (97)
T TIGR02008        15 ETIECPD-DQYILDAAEEAGI------DLPYSCRAGACSTCAGKV   52 (97)
T ss_pred             EEEEECC-CCcHHHHHHHcCC------CCCcCCCCccCCCCceEE
Confidence            3455567 8999999999983      245789999999999997

This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=98.19  E-value=1.4e-06  Score=84.73  Aligned_cols=69  Identities=26%  Similarity=0.535  Sum_probs=49.3

Q ss_pred             cCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHH
Q 023670          191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQII  270 (279)
Q Consensus       191 ~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~  270 (279)
                      .||+||.|+.+||++..       |..+   +++ .... +.++++      .+.+..|+.||.|..+||.+|++..++.
T Consensus       366 sCi~C~~C~d~CP~~Ll-------p~ql---~~~-a~~~-~~~e~~------~~~l~dCIECg~Ca~vCPs~iplvq~~r  427 (529)
T COG4656         366 SCIRCSLCADACPVNLL-------PQQL---YWF-AKGE-QHDEEE------EHNLLDCIECGACAYVCPSNIPLVQYFR  427 (529)
T ss_pred             ccccHHHHHHhCccccC-------HHHh---hHH-hhhh-hhhHHH------HHHhhhhhhhCcchhcCCCCCCHHHHHH
Confidence            79999999999998742       3222   222 2111 111111      2367889999999999999999999998


Q ss_pred             HHHHHHH
Q 023670          271 NIKQLQL  277 (279)
Q Consensus       271 ~lR~~~~  277 (279)
                      ..+.++.
T Consensus       428 ~~Ka~i~  434 (529)
T COG4656         428 QEKAEIL  434 (529)
T ss_pred             HHHHHHH
Confidence            8887654

>TIGR02484 CitB CitB domain protein

Probab=98.17  E-value=1.8e-06  Score=81.50  Aligned_cols=71  Identities=18%  Similarity=0.413  Sum_probs=50.6

Q ss_pred             hhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC---
Q 023670          185 KLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK---  261 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~---  261 (279)
                      ....+..|..|+.|...||++....    .              +.+.++..+..     -.+.|++||.|...||.   
T Consensus         9 ~~R~l~iC~~C~~C~~~CpvfPa~~----~--------------~~~~~~~d~~~-----la~lChnC~~C~~~CPy~pP   65 (372)
T TIGR02484         9 AKRVLNLCNSCGYCTGLCAVFPAAQ----G--------------RPDLTRGDLRH-----LAHLCHDCQSCWHDCQYAPP   65 (372)
T ss_pred             HHHHhHhCcCcCCccccCCCccccc----c--------------ccccCHHHHHH-----HHHHCcCcccccccCcCCCC
Confidence            3345688999999999999884321    0              11001111211     36889999999999999   


Q ss_pred             ---CCChHHHHHHHHHHHHh
Q 023670          262 ---GLNPGKQIINIKQLQLK  278 (279)
Q Consensus       262 ---gi~~~~~I~~lR~~~~~  278 (279)
                         ++|+.+++.++|....+
T Consensus        66 Hef~v~~p~lma~~R~~~~~   85 (372)
T TIGR02484        66 HAFAINLPATLADVRRASYA   85 (372)
T ss_pred             ccccCCHHHHHHHHHHHHHH
Confidence               77999999999987643

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=98.15  E-value=2.4e-06  Score=83.17  Aligned_cols=71  Identities=14%  Similarity=0.095  Sum_probs=52.0

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchh--hhhhhhhCCCCCChH
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHT--ILNCARACPKGLNPG  266 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~--Cg~C~~vCP~gi~~~  266 (279)
                      ...||+||.|+.+||+.       +-|..+.++.+    .++.   +..    +..+++.|..  ||.|+.|||.++++.
T Consensus       372 ~~aCI~CG~C~~vCPm~-------L~P~~L~~a~~----~~d~---d~a----~~lg~~ecieedCG~CsyVCPSki~l~  433 (447)
T TIGR01936       372 ERAMIPIGIYERVMPLD-------IPPTLLLKALI----AGDF---DKA----QRLGALEVDEEDFALCTFVDPSKYEYG  433 (447)
T ss_pred             ccceeECChHhhcCCCC-------CCHHHHHHHHH----cCCH---HHH----HHCCCcccCccccccCceECCCCchHH
Confidence            34699999999999975       34656555433    2221   122    2358999998  999999999999999


Q ss_pred             HHHHHHHHHHH
Q 023670          267 KQIINIKQLQL  277 (279)
Q Consensus       267 ~~I~~lR~~~~  277 (279)
                      ..|...-..+.
T Consensus       434 q~iR~~l~~~~  444 (447)
T TIGR01936       434 SIVRESLDRIE  444 (447)
T ss_pred             HHHHHHHHHHH
Confidence            99987665543

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=98.14  E-value=1.8e-07  Score=63.95  Aligned_cols=52  Identities=23%  Similarity=0.584  Sum_probs=24.7

Q ss_pred             cCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       191 ~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +||.||.|+.+||...+.               +........   + ..+  ......|++||+|+.+||+|+
T Consensus         1 ~C~~C~~C~~~CP~~~i~---------------~~~~~~~~~---~-~~~--~~~~~~C~~C~~C~~~CP~~A   52 (52)
T PF12838_consen    1 KCIGCGACVEACPTGAIR---------------LDEEENEEG---K-PKM--VIDPDKCTGCGACVEVCPTGA   52 (52)
T ss_dssp             C-SS--HHHHH-TTHHCE---------------EEETTT-SS---S-TTS--EETGGG----SHHHHHTTTS-
T ss_pred             CCCCcCchHHhcCccccC---------------cccccccCC---c-eEE--EEechhCcCcChhhhhCcCcC
Confidence            599999999999965321               000000000   0 011  234688999999999999985

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.

>PF13746 Fer4_18: 4Fe-4S dicluster domain

Probab=98.14  E-value=2.7e-07  Score=67.23  Aligned_cols=27  Identities=26%  Similarity=0.635  Sum_probs=23.0

Q ss_pred             HhhcccCccCchhhhhhhhhCCCCCCh
Q 023670          239 AIDDEFKLYRCHTILNCARACPKGLNP  265 (279)
Q Consensus       239 ~l~~~~~~~~C~~Cg~C~~vCP~gi~~  265 (279)
                      .+.+..+...|+.||+|+.+||+|||+
T Consensus        42 k~~~~~~~~~CVgCgrCv~~CP~~Idi   68 (69)
T PF13746_consen   42 KLRDRYGEGDCVGCGRCVRVCPAGIDI   68 (69)
T ss_pred             hhhhhcCCccCCCcChHhhhcCCCCCc
Confidence            334456889999999999999999996

>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J

Probab=98.12  E-value=2.6e-07  Score=63.64  Aligned_cols=54  Identities=24%  Similarity=0.565  Sum_probs=28.1

Q ss_pred             cCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       191 ~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +||.||.|+.+||......... +             .....     .........+.|+.||.|+.+||+++
T Consensus         1 kCi~Cg~C~~~CP~~~~~~~~~-~-------------~~~~~-----~~~~~~~~~~~C~~Cg~C~~~CP~~A   54 (55)
T PF13187_consen    1 KCIGCGRCVEACPVGVIEFDED-G-------------GKKVV-----DKDNERRNAEKCIGCGACVKACPTGA   54 (55)
T ss_dssp             C--TTTHHHHHSTTT-EEEETT-T-------------TCEEC-----SECCESTTGGG--TTCHHHHHSTTT-
T ss_pred             CCCCcchHHHHCCccCeEccCc-c-------------ccccc-----cccccCCCCCccccHhHHHHHcchhh
Confidence            6999999999999754321100 0             00000     00001114568999999999999984

>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A

Probab=98.11  E-value=6.6e-07  Score=61.05  Aligned_cols=50  Identities=28%  Similarity=0.512  Sum_probs=20.7

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACP  260 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP  260 (279)
                      +.+.++|+.||.|+.+||.....            .+   .....          ......+.|+.||.|+.+||
T Consensus         3 ~id~~~C~~C~~C~~~CP~~~~~------------~~---~~~~~----------~~~~~~~~C~~Cg~C~~~CP   52 (52)
T PF13237_consen    3 VIDEDKCIGCGRCVKVCPADNAI------------AI---DDGEK----------KVEIDPERCIGCGACVEVCP   52 (52)
T ss_dssp             ---TT------TTGGG-TT-----------------E---EE-SS----------SEEE-TTT--TTSHHHHH-T
T ss_pred             ccCcccCcCCcChHHHccchhHH------------Hh---hccCC----------CeEeCcccccccChhhhhCc
Confidence            35678999999999999972100            00   00000          01225789999999999999

>PRK10713 2Fe-2S ferredoxin YfaE; Provisional

Probab=98.03  E-value=9.9e-06  Score=61.13  Aligned_cols=39  Identities=33%  Similarity=0.677  Sum_probs=30.4

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG  114 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG  114 (279)
                      +++.+.+.||||||.+.|      +...++|+.|.||+|.+.+ .|
T Consensus        13 ~~~~~~~~tlL~a~~~~g------i~~p~~Cr~G~Cg~C~~~~~sG   52 (84)
T PRK10713         13 LLCQDEHPSLLAALESHN------VAVEYQCREGYCGSCRTRLVAG   52 (84)
T ss_pred             EEecCCCCcHHHHHHHcC------CCCCCCCCCeECCCCEeEEEeC
Confidence            344432589999999988      3366899999999999985 55

>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system

Probab=98.01  E-value=1.9e-05  Score=62.56  Aligned_cols=51  Identities=16%  Similarity=0.315  Sum_probs=36.6

Q ss_pred             eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEE
Q 023670           47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNI  112 (279)
Q Consensus        47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~i  112 (279)
                      .+.+..-++.|..      +  .|++.+ |.||||||++.|. .     ...+|+ .|.||+|.|.|
T Consensus         3 ~~~~~~~~~~p~~------~--~~~~~~-g~tLL~a~~~~gi-~-----i~~~CgG~G~CgtC~v~V   54 (110)
T TIGR02007         3 IVFLPHEDLCPEG------A--VVEAKP-GETILDVALDNGI-E-----IEHACEKSCACTTCHCIV   54 (110)
T ss_pred             EEEEeCcccCCCC------e--EEEECC-CChHHHHHHHcCC-C-----ccccCCCCceeCCCEEEE
Confidence            3445555566533      3  455567 8999999999883 2     446798 59999999988

This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.

>PLN00192 aldehyde oxidase

Probab=97.98  E-value=8.3e-06  Score=89.00  Aligned_cols=86  Identities=20%  Similarity=0.357  Sum_probs=69.0

Q ss_pred             EEEEE-eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE----------CCeeecccccccc--CCCCceE
Q 023670           66 KEFEI-NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI----------DGCNGLACLTKIS--PSGSAST  132 (279)
Q Consensus        66 ~~~~v-~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i----------nG~~~lAC~t~v~--~g~~~~~  132 (279)
                      +.|++ ++++ ++||||.||+...    -...+.+|.+|.||+|+|.|          +|+++.||.+++.  +|.+.+|
T Consensus        13 ~~~~~~~~~p-~~~Ll~~LR~~~~----ltgtK~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T   87 (1344)
T PLN00192         13 ERFELSSVDP-STTLLEFLRTQTP----FKSVKLGCGEGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVNGCSITT   87 (1344)
T ss_pred             EEEEeccCCC-CCcHHHHHHHhhC----CCCcCCCCCCCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhCCCEEEe
Confidence            56777 5777 8999999998531    24477899999999999999          6899999999998  7888999


Q ss_pred             EeeCCC----Ccchhhhhhccchhhhhh
Q 023670          133 ITPLPH----MFVIKDLVVDMTNFYNQY  156 (279)
Q Consensus       133 iepl~~----~~vikDLvvD~~~~~~~~  156 (279)
                      ||.|.+    +..|+.-+++.+.+.+.|
T Consensus        88 vEgl~~~~~~lhpvq~a~~~~~~~QCGf  115 (1344)
T PLN00192         88 SEGLGNSKDGFHPIHKRFAGFHASQCGF  115 (1344)
T ss_pred             ecCcCCCCCCCCHHHHHHHHcCCCccCC
Confidence            999974    334677788888776644

>PLN02593 adrenodoxin-like ferredoxin protein

Probab=97.98  E-value=2.6e-05  Score=62.56  Aligned_cols=40  Identities=20%  Similarity=0.394  Sum_probs=32.2

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCC-CccCeeEEEE
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE-GICGSCAMNI  112 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~-g~CG~C~v~i  112 (279)
                      ++.+|++.. |.|||+|++++|..      +..+|+. |.||.|.|.|
T Consensus        11 ~~~~v~~~~-G~tLl~a~~~~gi~------i~~~CgG~g~C~tC~V~V   51 (117)
T PLN02593         11 EERTVKAPV-GMSLLEAAHENDIE------LEGACEGSLACSTCHVIV   51 (117)
T ss_pred             CEEEEEECC-CCcHHHHHHHcCCC------CCccCCCcceeCCCEEEE
Confidence            456677777 99999999999842      3357985 9999999999

>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]

Probab=97.96  E-value=9.9e-07  Score=73.90  Aligned_cols=100  Identities=20%  Similarity=0.418  Sum_probs=54.5

Q ss_pred             chhhhhhccchhhhhhhccc-cccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHH
Q 023670          141 VIKDLVVDMTNFYNQYKSIE-PWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALL  219 (279)
Q Consensus       141 vikDLvvD~~~~~~~~~~~~-p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~  219 (279)
                      .++.+.+.+++++..-..++ ||-...  .   ...++-.+..+..-.+..+||.|..|.++||.-...           
T Consensus        66 ~~rGf~itLsh~f~~p~TInYPfEKgp--l---S~RFRGehalrRyp~geerCIACklCeavCPaqait-----------  129 (212)
T KOG3256|consen   66 LIRGFMITLSHTFREPVTINYPFEKGP--L---SPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAIT-----------  129 (212)
T ss_pred             HHHHHHhhHHhhcCCCeeecCccccCC--C---CcccccchhhhcCCCcchhhhhHHHHHHhCCcccce-----------
Confidence            45667777777666433333 221110  0   011111223334445678999999999999964321           


Q ss_pred             HHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          220 HANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       220 ~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                        ..|  ..+...+ .|....  +.....|+.||.|+++||++.
T Consensus       130 --iea--e~r~dgs-rRttrY--dIDmtkCIyCG~CqEaCPvda  166 (212)
T KOG3256|consen  130 --IEA--EERTDGS-RRTTRY--DIDMTKCIYCGFCQEACPVDA  166 (212)
T ss_pred             --eec--eecCCcc-ccceee--cccceeeeeecchhhhCCccc
Confidence              011  0111111 122111  235688999999999999876

>TIGR02969 mam_aldehyde_ox aldehyde oxidase

Probab=97.88  E-value=1.3e-05  Score=87.45  Aligned_cols=83  Identities=22%  Similarity=0.332  Sum_probs=65.4

Q ss_pred             EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC----------Ceeecccccccc--CCCCceEEeeC
Q 023670           69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID----------GCNGLACLTKIS--PSGSASTITPL  136 (279)
Q Consensus        69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in----------G~~~lAC~t~v~--~g~~~~~iepl  136 (279)
                      .+++++ ++||||.||+...    -...+.+|.+|.||+|+|.||          |+++.||.+++.  +|.+.+|||.|
T Consensus        14 ~~~~~~-~~~ll~~LR~~~~----l~gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~v~TvEgl   88 (1330)
T TIGR02969        14 EKNVDP-ETMLLPYLRKKLR----LTGTKYGCGGGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYGAAVTTVEGI   88 (1330)
T ss_pred             eccCCC-CCcHHHHHHhhcC----CCCCCCCcCCCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCCCEEEecCCc
Confidence            346677 8999999998431    245788999999999999998          578999999998  78889999999


Q ss_pred             CC----Ccchhhhhhccchhhhhh
Q 023670          137 PH----MFVIKDLVVDMTNFYNQY  156 (279)
Q Consensus       137 ~~----~~vikDLvvD~~~~~~~~  156 (279)
                      .+    +..++.-.+|.+.+.+.|
T Consensus        89 ~~~~~~l~pvq~a~~~~~~~QCGf  112 (1330)
T TIGR02969        89 GSTRTRLHPVQERIAKCHGTQCGF  112 (1330)
T ss_pred             CCCCCCCCHHHHHHHHcCCCcCCC
Confidence            74    233566677887766644

Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.

>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=97.88  E-value=2.2e-06  Score=60.49  Aligned_cols=52  Identities=23%  Similarity=0.491  Sum_probs=25.4

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC-CC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK-GL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~-gi  263 (279)
                      +.++||.||.|+.+||.....            ++.+  + .+.    .   +  ......|+.||.|+.+||+ ++
T Consensus         4 d~~~Ci~Cg~C~~~Cp~~~~~------------~i~~--~-~~~----~---~--~v~~~~C~GCg~C~~~CPv~~A   56 (59)
T PF14697_consen    4 DEDKCIGCGKCVRACPDGAID------------AIEV--D-EGK----K---V--PVNPDKCIGCGLCVKVCPVKDA   56 (59)
T ss_dssp             -TTT----SCCCHHCCCCS-S-------------ECC--T-TTT----S---S--ECE-TT--S-SCCCCCSSSTTS
T ss_pred             CcccccChhhHHhHcCcccee------------eEEe--c-CCe----e---E--EeccccCcCcCcccccCCCccC
Confidence            457899999999999963211            1111  0 100    0   0  1234689999999999996 64

...

>PLN03136 Ferredoxin; Provisional

Probab=97.86  E-value=0.00011  Score=61.40  Aligned_cols=37  Identities=38%  Similarity=0.579  Sum_probs=30.3

Q ss_pred             EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE
Q 023670           69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI  112 (279)
Q Consensus        69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i  112 (279)
                      ++++++ |.+||||+.+.|. .     ..++|+.|.||+|.+.|
T Consensus        67 ~~~~~~-g~tILdAa~~~Gi-~-----lp~sCr~G~CGtC~~~l  103 (148)
T PLN03136         67 EVECEE-DVYVLDAAEEAGI-D-----LPYSCRAGSCSSCAGKV  103 (148)
T ss_pred             EEEeCC-CCcHHHHHHHcCC-C-----CCcCCCCccCCCCEEEE
Confidence            345556 8999999999983 2     44779999999999997

>PRK15033 tricarballylate utilization protein B; Provisional

Probab=97.86  E-value=1.5e-05  Score=75.75  Aligned_cols=73  Identities=19%  Similarity=0.344  Sum_probs=50.8

Q ss_pred             HhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC-
Q 023670          183 RAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK-  261 (279)
Q Consensus       183 ~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~-  261 (279)
                      .+....+..|..|..|...||+...         . -  .+.-.   +   +..+.     +....|++||.|...||. 
T Consensus        26 ~e~~r~~~iC~~Cr~C~~~CpvfP~---------l-~--~r~~~---~---~~d~~-----~~a~~C~~Cg~C~~~CP~a   82 (389)
T PRK15033         26 AEVARQMQICNACRYCEGFCAVFPA---------M-T--RRLEF---G---KADIH-----YLANLCHNCGACLHACQYA   82 (389)
T ss_pred             HHHHHHhHhCCCCCCccccCCCchh---------h-h--hhhcC---C---hhhhH-----HHHHhCcCcccccccCcCC
Confidence            3445567899999999999998731         1 0  01100   0   01111     134589999999999999 


Q ss_pred             -----CCChHHHHHHHHHHHHh
Q 023670          262 -----GLNPGKQIINIKQLQLK  278 (279)
Q Consensus       262 -----gi~~~~~I~~lR~~~~~  278 (279)
                           +|++.+++.++|...-+
T Consensus        83 pPhef~i~ip~~l~~~r~~sy~  104 (389)
T PRK15033         83 PPHEFAVNVPKAMAQVRLETYQ  104 (389)
T ss_pred             CCcccCCCHHHHHHHHHHHHHH
Confidence                 99999999999987643

>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein

Probab=97.86  E-value=3e-06  Score=73.23  Aligned_cols=61  Identities=21%  Similarity=0.418  Sum_probs=36.1

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+.++||.||.|+.+||.....-           .+..  +...  .......+  ......|+.||.|+++||+++
T Consensus        58 ~~~~~kCi~Cg~C~~aCP~~ai~~-----------~~~~--~~~~--~~~~~~~~--~id~~~Ci~Cg~Cv~aCP~~A  118 (183)
T TIGR00403        58 HFEFDKCIACEVCVRVCPINLPVV-----------DWEF--NKAI--KKKQLKNY--SIDFGVCIFCGNCVEYCPTNC  118 (183)
T ss_pred             EeCcccCcCcCChhhhCCCCcccc-----------cccc--cccc--ccccccee--ecCcccccCcCchhhhcCCCC
Confidence            356789999999999999753100           0000  0000  00000001  124578999999999999875

>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]

Probab=97.73  E-value=3.7e-05  Score=75.70  Aligned_cols=73  Identities=25%  Similarity=0.428  Sum_probs=49.3

Q ss_pred             hhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          185 KLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ......+|..||-|..+||...      --|.++-.+    .++ +   .+.++.+     ...|..||+|..+||++|+
T Consensus       395 ~~e~a~kc~~cG~C~~~CP~~l------~i~eam~~A----~~G-d---~~~l~~l-----~d~C~~C~rCEq~Cpk~ip  455 (772)
T COG1152         395 FMEYARKCTYCGNCMRACPNEL------DIPEAMEYA----AKG-D---FSKLEDL-----HDVCIGCGRCEQVCPKNIP  455 (772)
T ss_pred             HHHHHHhcccccchhccCCccc------chHHHHHHh----hcC-C---hHHHHHH-----HHHhhhhhhhhhhCcccCc
Confidence            3445689999999999999542      112232222    221 1   1233333     4579999999999999999


Q ss_pred             hHHHHHHHHHHH
Q 023670          265 PGKQIINIKQLQ  276 (279)
Q Consensus       265 ~~~~I~~lR~~~  276 (279)
                      +..+|.+.-+..
T Consensus       456 i~nm~~~a~~~~  467 (772)
T COG1152         456 ILNMIEKAAQKR  467 (772)
T ss_pred             hhhHHHHHHHHh
Confidence            999998776543

>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]

Probab=97.70  E-value=0.0001  Score=69.46  Aligned_cols=77  Identities=25%  Similarity=0.453  Sum_probs=50.2

Q ss_pred             cCcccCcccCCCCCcccCCCcccCHHHHH---HHHHHhhcCcchhHHHHHHHhhc--------ccCccCchhhhhhhhhC
Q 023670          191 ECILCACCSTSCPSYWWTSEAYLGPAALL---HANRWISDSRDEYTKERLEAIDD--------EFKLYRCHTILNCARAC  259 (279)
Q Consensus       191 ~CI~CG~C~~~CP~~~~~~~~~~gP~~l~---~a~r~~~d~r~~~~~erl~~l~~--------~~~~~~C~~Cg~C~~vC  259 (279)
                      .|+.|..|+. ||.....      |..+.   .+..+  +.-+ ..+-+...+..        ......|+.||.|...|
T Consensus       294 ~Ct~C~yC~P-CP~gInI------P~~f~lyN~~~~~--~~~~-~~~~~Y~~l~~~~~~~~~~~g~as~CieCgqCl~~C  363 (391)
T COG1453         294 PCTGCRYCLP-CPSGINI------PEIFRLYNLAVAF--DDVD-YAKFRYNMLENGGHWFPGPKGKASDCIECGQCLEKC  363 (391)
T ss_pred             CCccccccCc-CCCCCCh------HHHHHHHHHHHhh--ccch-hhHHHHHHHhccCccCCCCcccccccchhhhhhhcC
Confidence            4999999999 9975422      22221   11111  1111 11223433332        12368999999999999


Q ss_pred             CCCCChHHHHHHHHHHHH
Q 023670          260 PKGLNPGKQIINIKQLQL  277 (279)
Q Consensus       260 P~gi~~~~~I~~lR~~~~  277 (279)
                      |.++++.++++++++.+-
T Consensus       364 Pq~l~Ip~~Lk~v~~~le  381 (391)
T COG1453         364 PQHLDIPELLKEVHEELE  381 (391)
T ss_pred             CCcCcHHHHHHHHHHHhc
Confidence            999999999999987763

>PTZ00038 ferredoxin; Provisional

Probab=97.69  E-value=7.7e-05  Score=64.66  Aligned_cols=36  Identities=33%  Similarity=0.627  Sum_probs=29.8

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI  112 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i  112 (279)
                      +++++ |.||||||++.|.      ....+|+.|.||.|.|+|
T Consensus       109 ~~v~~-geTILdAae~aGI------~lp~sCr~G~CGtCkvrV  144 (191)
T PTZ00038        109 IECDE-DEYILDAAERQGV------ELPYSCRGGSCSTCAAKL  144 (191)
T ss_pred             EEeCC-CCcHHHHHHHcCC------CCCcCCCCccCCCCEeEE
Confidence            45556 8999999999984      245789999999999997

>PTZ00490 Ferredoxin superfamily; Provisional

Probab=97.65  E-value=0.0002  Score=59.50  Aligned_cols=53  Identities=15%  Similarity=0.326  Sum_probs=37.3

Q ss_pred             eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC
Q 023670           47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID  113 (279)
Q Consensus        47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in  113 (279)
                      .++|.|.  |++.      ..++|++++ |.|||++|+..+...     ....|. .|.||.|.|.|.
T Consensus        35 ~v~I~~~--~~dG------~~~~v~~~~-G~sLLeal~~~~~i~-----i~~~CGG~g~CgtC~V~V~   88 (143)
T PTZ00490         35 KVKVCVK--KRDG------THCDVEVPV-GMSLMHALRDVAKLD-----VEGTCNGCMQCATCHVYLS   88 (143)
T ss_pred             cEEEEEE--cCCC------CEEEEEECC-CccHHHHHHHcCCCC-----ccccCCCCCEeCCCEEEEC
Confidence            4555554  4433      456788888 999999999964222     334575 699999999994

>COG0633 Fdx Ferredoxin [Energy production and conversion]

Probab=97.64  E-value=0.0001  Score=57.74  Aligned_cols=38  Identities=26%  Similarity=0.580  Sum_probs=30.6

Q ss_pred             EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC
Q 023670           69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID  113 (279)
Q Consensus        69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in  113 (279)
                      .+..+. |.||||+|.+.|..      ..++|+.|.||+|.|+|.
T Consensus        16 ~~~~~~-g~tiLe~a~~~gi~------i~~~C~~g~C~TC~v~v~   53 (102)
T COG0633          16 TEAVNE-GETLLEAAERNGIP------IEYACRGGACGTCRVKVL   53 (102)
T ss_pred             EEeccC-CcHHHHHHHHCCCc------ceecCCCCccCccEEEEe
Confidence            344444 89999999999842      557899999999999975

>PRK13984 putative oxidoreductase; Provisional

Probab=97.61  E-value=5.2e-05  Score=76.47  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=28.8

Q ss_pred             CccCchhhhhhhhhCCCCCChHHHHHHHHHHH
Q 023670          245 KLYRCHTILNCARACPKGLNPGKQIINIKQLQ  276 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~  276 (279)
                      ..++|+.||.|..+||.++++.+.|..+|+..
T Consensus       183 ~~~~C~~Cg~C~~~CP~~~~i~~~~~~i~~~~  214 (604)
T PRK13984        183 EAARCVECGICTDTCPAHMDIPQYIKAIYKDD  214 (604)
T ss_pred             hhhhhcCCCcccccCCCCCCHHHHHHHHHcCC
Confidence            35889999999999999999999999998643

>PRK05888 NADH dehydrogenase subunit I; Provisional

Probab=97.52  E-value=2.2e-05  Score=66.44  Aligned_cols=59  Identities=31%  Similarity=0.556  Sum_probs=34.8

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+..+||.||.|..+||.....-.           .....+++.     .....  ......|+.||.|+.+||.++
T Consensus        55 ~~~~~Ci~C~~C~~~CP~~ai~~~-----------~~~~~~g~~-----~~~~~--~i~~~~C~~Cg~Cv~~CP~~A  113 (164)
T PRK05888         55 NGEERCIACKLCAAICPADAITIE-----------AAEREDGRR-----RTTRY--DINFGRCIFCGFCEEACPTDA  113 (164)
T ss_pred             CCCccCCcccChHHHcCccccccc-----------cccCCCCcc-----cceee--ecCCCcCcccCcchhhcCcCc
Confidence            345699999999999995421100           000000000     00001  124689999999999999875

>CHL00014 ndhI NADH dehydrogenase subunit I

Probab=97.50  E-value=2.4e-05  Score=66.51  Aligned_cols=60  Identities=25%  Similarity=0.438  Sum_probs=35.2

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+.++|+.||.|+.+||.....           ..+++..+.+.    ..+..+  ......|+.||.|+.+||.++
T Consensus        56 ~~~~~Ci~Cg~C~~aCP~~~~~-----------~~~~~~~~~~~----~~~~~~--~id~~~C~~Cg~C~~~CP~~A  115 (167)
T CHL00014         56 FEFDKCIACEVCVRVCPIDLPV-----------VDWKLETDIRK----KRLLNY--SIDFGVCIFCGNCVEYCPTNC  115 (167)
T ss_pred             eccccCCCcCcHHHhCCCCCcc-----------ccccccccccc----cccccc--cCCCCcCcCccchHhhcCcCc
Confidence            4567899999999999964210           00111001010    011111  123467999999999999874

>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional

Probab=97.50  E-value=1.9e-05  Score=73.55  Aligned_cols=63  Identities=29%  Similarity=0.519  Sum_probs=36.4

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+..+||.|+.|..+||.....           ..++...+.++..  .+...+  ......|..||.|+.+||++.
T Consensus       243 ~id~~~Ci~C~~C~~~CP~~ai~-----------~~~~~~~~~~~~~--~~~~~~--~~d~~~C~gCg~C~~~CP~~A  305 (312)
T PRK14028        243 VIDHSKCIMCRKCWLYCPDDAII-----------EAWREAEGPRGRK--FRMKMI--DFDYQYCKGCGVCAEVCPTGA  305 (312)
T ss_pred             EECcccCcCcccccccCChhhhh-----------cccccccCccccc--ccceee--cCCcccCcCcCchhhhCCHhh
Confidence            34678999999999999965321           1111111111100  011111  123578999999999999754

>CHL00065 psaC photosystem I subunit VII

Probab=97.47  E-value=2.2e-05  Score=58.55  Aligned_cols=56  Identities=25%  Similarity=0.558  Sum_probs=33.8

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..++||.||.|+.+||.....-.            .+  +....   ..   .........|+.||.|+.+||.++
T Consensus         7 ~~~~Ci~Cg~C~~~CP~~~i~~~------------~~--~~~~~---~~---~~~~~~~~~C~~C~~C~~~CP~~A   62 (81)
T CHL00065          7 IYDTCIGCTQCVRACPTDVLEMI------------PW--DGCKA---KQ---IASAPRTEDCVGCKRCESACPTDF   62 (81)
T ss_pred             ccccCCChhHHHHHCCccchhhe------------ec--ccccc---cc---ccccCCCCcCCChhhhhhhcCccc
Confidence            45689999999999995421100            00  00000   00   000113468999999999999986

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=97.45  E-value=0.00058  Score=64.30  Aligned_cols=38  Identities=29%  Similarity=0.772  Sum_probs=30.7

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG  114 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG  114 (279)
                      +++++ +.||||+|.+.|.      ....+|+.|+||+|.+.+ .|
T Consensus       277 ~~~~~-~~slL~~~~~~gi------~~~~~C~~G~Cg~C~~~~~~G  315 (352)
T TIGR02160       277 SSLSR-DESVLDAALRARP------DLPFACKGGVCGTCRAKVLEG  315 (352)
T ss_pred             EecCC-CCcHHHHHHHcCC------CCcCCCCCccCCCCEEEEecc
Confidence            45566 8999999999883      245789999999999986 44

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PLN02906 xanthine dehydrogenase

Probab=97.41  E-value=0.00012  Score=79.95  Aligned_cols=75  Identities=19%  Similarity=0.399  Sum_probs=59.4

Q ss_pred             chHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC------C----eeecccccccc--CCCCceEEeeCCC----Cc
Q 023670           77 PMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID------G----CNGLACLTKIS--PSGSASTITPLPH----MF  140 (279)
Q Consensus        77 ~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in------G----~~~lAC~t~v~--~g~~~~~iepl~~----~~  140 (279)
                      +||||.||+.+  .   ...+.+|.+|.||+|+|.||      |    +++.||.+++.  +|.+.+|||.|..    +.
T Consensus         2 ~~ll~~LR~~~--l---~g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~~~   76 (1319)
T PLN02906          2 QTLLEYLRDLG--L---TGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGNRRDGLH   76 (1319)
T ss_pred             CcHHHHHHhCC--C---CCCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCCCCCCCC
Confidence            68999999843  2   45788999999999999999      5    58899999998  7888899999973    23


Q ss_pred             chhhhhhccchhhhhh
Q 023670          141 VIKDLVVDMTNFYNQY  156 (279)
Q Consensus       141 vikDLvvD~~~~~~~~  156 (279)
                      .++.-+++.+.+.+.|
T Consensus        77 ~vq~a~~~~~~~QCG~   92 (1319)
T PLN02906         77 PVQEALASMHGSQCGF   92 (1319)
T ss_pred             HHHHHHHHcCCCcCCC
Confidence            3566667777766543

>PRK02651 photosystem I subunit VII; Provisional

Probab=97.38  E-value=4.1e-05  Score=56.95  Aligned_cols=56  Identities=25%  Similarity=0.538  Sum_probs=34.3

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..++||.||.|+.+||.......+            +  +....   ..   +........|+.||.|+.+||.++
T Consensus         7 ~~~~Ci~C~~C~~~CP~~~i~~~~------------~--~~~~~---~~---~~~~~~~~~C~~Cg~C~~~CP~~a   62 (81)
T PRK02651          7 IYDTCIGCTQCVRACPLDVLEMVP------------W--DGCKA---GQ---IASSPRTEDCVGCKRCETACPTDF   62 (81)
T ss_pred             ccccCCCcchHHHHCCccceeccc------------c--ccccc---Cc---ccccCCCCcCCChhhhhhhcCCCc
Confidence            457899999999999954321100            0  00000   00   001123468999999999999875

>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific

Probab=97.38  E-value=1.9e-05  Score=59.92  Aligned_cols=70  Identities=24%  Similarity=0.314  Sum_probs=36.2

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+..+||.||.|+.+||....... ..+...+..     ..........+  ..........|+.||.|+.+||.++
T Consensus        17 ~i~~~~Ci~C~~Cv~~CP~~~i~~~-~~~~~~~~~-----~~~~~~~~~~~--~~~~~i~~~~C~~Cg~C~~~CP~~A   86 (91)
T TIGR02936        17 SIDQEKCIGCGRCYKVCGRDVLTLK-GINEEGELV-----ASDDDDDEIER--KVMVVANPGNCIGCGACARVCPKKC   86 (91)
T ss_pred             EECHhHCCCcchHHHHcChhhceee-ccccccccc-----ccccccccccc--ceeeecCCccCcChhhhhhhCCHhH
Confidence            4567899999999999995422100 000000000     00000000000  0000124578999999999999764

Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.

>PRK05713 hypothetical protein; Provisional

Probab=97.37  E-value=0.00027  Score=65.60  Aligned_cols=57  Identities=26%  Similarity=0.437  Sum_probs=43.1

Q ss_pred             EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCCC
Q 023670           68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGS  129 (279)
Q Consensus        68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~~  129 (279)
                      .+|++++ |.|||||+.+.|. .     ...+|+.|.||+|.|.| .|.                 .+|+|.+.+..   
T Consensus         9 ~~~~~~~-g~tlL~a~~~~gi-~-----~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~---   78 (312)
T PRK05713          9 RRWSVPA-GSNLLDALNAAGV-A-----VPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVG---   78 (312)
T ss_pred             eEEEECC-CCcHHHHHHHcCC-C-----CCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECC---
Confidence            3466667 8999999999884 2     34679999999999997 342                 35899999883   


Q ss_pred             ceEEe
Q 023670          130 ASTIT  134 (279)
Q Consensus       130 ~~~ie  134 (279)
                      .++|+
T Consensus        79 d~~i~   83 (312)
T PRK05713         79 DLRVE   83 (312)
T ss_pred             ceEEE
Confidence            35555

>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC

Probab=97.32  E-value=4.6e-05  Score=56.69  Aligned_cols=57  Identities=21%  Similarity=0.433  Sum_probs=34.7

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....+||.||.|+.+||...+.-                 +..+......+. +  ......|+.||.|..+||+++
T Consensus         5 ~~~~~Ci~C~~Cv~~CP~~~i~~-----------------~~~~~~~~~~~~-~--~~~~~~C~~Cg~C~~~CP~~a   61 (80)
T TIGR03048         5 KIYDTCIGCTQCVRACPTDVLEM-----------------VPWDGCKAGQIA-S--APRTEDCVGCKRCESACPTDF   61 (80)
T ss_pred             ecCCcCcCcchHHHHCCccceee-----------------eccccccccccc-C--cCCCCcCcChhHHHHhcCccc
Confidence            45678999999999999542210                 000000000000 1  113468999999999999976

Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.

>PRK08222 hydrogenase 4 subunit H; Validated

Probab=97.32  E-value=3.7e-05  Score=66.26  Aligned_cols=55  Identities=27%  Similarity=0.561  Sum_probs=34.9

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+...||.||.|+.+||.....               ...+... .  .+  .+  ......|+.||.|+.+||.++
T Consensus        35 ~d~~~Ci~Cg~Cv~aCP~~Ai~---------------~~~~~~~-~--~~--~~--~~~~~~C~~Cg~C~~~CPt~A   89 (181)
T PRK08222         35 LMPSQCIACGACTCACPANALT---------------IQTDDQQ-N--SR--TW--QLYLGRCIYCGRCEEVCPTRA   89 (181)
T ss_pred             eChhhCcchhHHHHhCCccceE---------------ccccccc-C--cc--ce--eeccCcCcCCCCcccccCcCe
Confidence            4568899999999999964321               0000000 0  00  01  123578999999999999874

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional

Probab=97.31  E-value=6.1e-05  Score=60.45  Aligned_cols=52  Identities=25%  Similarity=0.580  Sum_probs=34.7

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+..+|+.||.|+.+||.....               +  ++..    ..   +  ......|+.||.|+.+||.++
T Consensus        38 ~i~~~~Ci~C~~C~~~CP~~ai~---------------~--~~~~----~~---~--~i~~~~C~~Cg~Cv~~CP~~A   89 (120)
T PRK08348         38 LYDVDKCVGCRMCVTVCPAGVFV---------------Y--LPEI----RK---V--ALWTGRCVFCGQCVDVCPTGA   89 (120)
T ss_pred             EECcccCcCcccHHHHCCccceE---------------c--cccc----cc---e--EecCCcCcChhhhHHhCCcCc
Confidence            45678999999999999953211               0  0000    00   0  113467999999999999875

>PLN00071 photosystem I subunit VII; Provisional

Probab=97.30  E-value=4.8e-05  Score=56.67  Aligned_cols=56  Identities=23%  Similarity=0.465  Sum_probs=33.6

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...+|+.||.|+.+||.....-..              .++..  . ..   .........|+.||.|+.+||.++
T Consensus         7 ~~~~C~~C~~C~~~CP~~~i~~~~--------------~~~~~--~-~~---~~~~~~~~~C~~Cg~C~~~CP~~A   62 (81)
T PLN00071          7 IYDTCIGCTQCVRACPTDVLEMIP--------------WDGCK--A-KQ---IASAPRTEDCVGCKRCESACPTDF   62 (81)
T ss_pred             cCCcCcChhHHHHHCCccceeeec--------------ccccc--c-cc---ccCcCCCCcCcChhhHHhhcCCcc
Confidence            457899999999999954211000              00000  0 00   000113467999999999999885

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=97.28  E-value=0.00042  Score=65.20  Aligned_cols=52  Identities=29%  Similarity=0.628  Sum_probs=39.8

Q ss_pred             EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-------------------eecccccccc
Q 023670           67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-------------------NGLACLTKIS  125 (279)
Q Consensus        67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-------------------~~lAC~t~v~  125 (279)
                      ...+++++ |.||||||.+.|.      ....+|+.|.||+|.+.+ .|.                   .+|+|.+.+.
T Consensus        14 ~~~~~~~~-g~tlL~a~~~~g~------~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~   85 (340)
T PRK11872         14 TLFFPVGK-DELLLDAALRNGI------NLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQTRVK   85 (340)
T ss_pred             EEEEEeCC-CCcHHHHHHHcCC------CCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeCEEC
Confidence            34455567 8999999999883      355789999999999986 332                   2489988776

>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I

Probab=97.28  E-value=3.5e-05  Score=61.77  Aligned_cols=58  Identities=26%  Similarity=0.497  Sum_probs=34.4

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..++||.||.|+.+||.......            .+......    .....+  ......|..||.|+.+||.++
T Consensus        41 ~~~~Ci~C~~C~~~CP~~ai~~~------------~~~~~~~~----~~~~~~--~~~~~~C~~Cg~Cv~~CP~~a   98 (122)
T TIGR01971        41 GEEKCIGCTLCAAVCPADAIRVV------------PAEGEDGK----RRLKFY--QINFGRCIFCGLCEEACPTDA   98 (122)
T ss_pred             CcCcCcCcchhhhhcCHhHeeee------------eeccCCCc----eecccc--eECcccCCCCCchhhhCCCcc
Confidence            34889999999999995432100            00000000    000001  123577999999999999984

This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=97.25  E-value=0.00041  Score=65.00  Aligned_cols=49  Identities=27%  Similarity=0.588  Sum_probs=38.3

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-------------------eecccccccc
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-------------------NGLACLTKIS  125 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-------------------~~lAC~t~v~  125 (279)
                      +++++ |.||||||.+.|.      ....+|+.|.||+|.|.+ +|.                   .+|+|.+.+.
T Consensus        14 ~~~~~-g~tlL~a~~~~gi------~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~   82 (339)
T PRK07609         14 FTAEP-DETILDAALRQGI------HLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAKPL   82 (339)
T ss_pred             EEeCC-CCcHHHHHHHcCC------CCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCEEC
Confidence            45557 8999999999883      245789999999999985 331                   2589988887

>PRK06273 ferredoxin; Provisional

Probab=97.24  E-value=3.5e-05  Score=65.54  Aligned_cols=62  Identities=19%  Similarity=0.318  Sum_probs=35.5

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+...|+.||.|..+||...... ...+|....       .+...   .    ..-......|+.||.|..+||.++
T Consensus        46 id~~~CigCg~C~~aCP~~AI~~-~~~ep~~~~-------~~~~~---~----~~~~Id~~kCi~Cg~C~~aCP~~A  107 (165)
T PRK06273         46 VFEELCIGCGGCANVCPTKAIEM-IPVEPVKIT-------EGYVK---T----KIPKIDYEKCVYCLYCHDFCPVFA  107 (165)
T ss_pred             ECchhCcChhHHHHhcCccceee-ecccccchh-------ccccc---c----cceecccccCcCCCCcchhCCHhh
Confidence            35668999999999999643210 000110000       00000   0    000123578999999999999985

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric

Probab=97.24  E-value=6e-05  Score=81.35  Aligned_cols=71  Identities=20%  Similarity=0.350  Sum_probs=38.8

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHH-H---hhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANR-W---ISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG  262 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r-~---~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g  262 (279)
                      .+..+||.||.|+.+||..... ..++++..+..+-. +   ...+++.   ... ...-....+.|+.||.|+.+||.+
T Consensus       680 ~~~~~Ci~Cg~C~~vCP~~ai~-~~~~~~~~~~~ap~~~~~~~~~~~~~---~~~-~~~i~i~~~~C~gCg~Cv~~CP~~  754 (1165)
T TIGR02176       680 WVPDNCIQCNQCAFVCPHAAIR-PKLADEEELENAPAGFKSLDAKGKEL---EGM-KFRIQISPLDCTGCGNCVDICPAK  754 (1165)
T ss_pred             eccccCCCccchHHhcChhhcc-ccccchhhhhcCcccchhhhhhcccc---ccc-ceeEEeccccCcCccchhhhcCCC
Confidence            4567899999999999976532 12222222111100 0   0000000   000 000123568999999999999987

This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.

>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed

Probab=97.22  E-value=7e-05  Score=58.56  Aligned_cols=60  Identities=18%  Similarity=0.316  Sum_probs=35.6

Q ss_pred             hhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          184 AKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       184 ~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....+.+.||.||.|+.+||.....               +..++.... ...   . .......|+.||.|+.+||.+.
T Consensus        10 ~v~id~~~Ci~C~~Cv~aCP~~ai~---------------~~~~~~~~~-~~~---~-~~i~~~~C~~C~~C~~~CP~~A   69 (103)
T PRK09626         10 PVWVDESRCKACDICVSVCPAGVLA---------------MRIDPHAVL-GKM---I-KVVHPESCIGCRECELHCPDFA   69 (103)
T ss_pred             CeEECcccccCCcchhhhcChhhhc---------------ccccccccc-Cce---e-eEeCCccCCCcCcchhhCChhh
Confidence            3445678999999999999964311               000000000 000   0 0112467999999999999664

>PRK05113 electron transport complex protein RnfB; Provisional

Probab=97.16  E-value=0.00018  Score=62.52  Aligned_cols=52  Identities=19%  Similarity=0.394  Sum_probs=34.6

Q ss_pred             hhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          185 KLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+.+.++||.||.|+.+||....           .      ...+..      .    ......|+.||.|+.+||+++
T Consensus       109 ~~id~~~Ci~Cg~Cv~aCp~~ai-----------~------~~~~~~------~----~v~~~~C~~Cg~Cv~vCP~~A  160 (191)
T PRK05113        109 AFIDEDNCIGCTKCIQACPVDAI-----------V------GATKAM------H----TVISDLCTGCDLCVAPCPTDC  160 (191)
T ss_pred             eEEeCCcCCCCChhhhhCCHhhh-----------e------cccCCc------e----eecCCcCCchHHHHHHcCcCc
Confidence            34467899999999999994211           0      001110      0    012467999999999999876

>COG1145 NapF Ferredoxin [Energy production and conversion]

Probab=97.16  E-value=0.00022  Score=54.18  Aligned_cols=54  Identities=20%  Similarity=0.358  Sum_probs=35.0

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+..+||.||.|+.+||.....               .  .....   . ....  ......|+.||.|..+||.++
T Consensus        26 ~~~~~Ci~Cg~C~~~CP~~ai~---------------~--~~~~~---~-~~~~--~~~~~~C~~C~~C~~~Cp~~a   79 (99)
T COG1145          26 IDAEKCIGCGLCVKVCPTGAIE---------------L--IEEGL---L-LPEV--VIDPDLCVLCGACLKVCPVDA   79 (99)
T ss_pred             eCccccCCCCCchhhCCHHHhh---------------c--ccccC---c-cceE--EEccccCccccchHhhCCcCC
Confidence            3456799999999999965211               0  00000   0 0001  123578999999999999998

>PRK09477 napH quinol dehydrogenase membrane component; Provisional

Probab=97.13  E-value=0.00024  Score=65.00  Aligned_cols=54  Identities=19%  Similarity=0.413  Sum_probs=34.3

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+.++|+.|+.|..+||......     |.         ..+.+.    .   .  ......|+.||+|+++||+++
T Consensus       205 ~d~~~C~~C~~C~~~CP~~~i~~-----~~---------~~~~~~----~---~--~i~~~~C~~Cg~Cv~~CP~~A  258 (271)
T PRK09477        205 HDRQKCTRCMDCFHVCPEPQVLR-----PP---------LKGKQS----P---S--QVTSGDCITCGRCIDVCSEDV  258 (271)
T ss_pred             CCcccCcccCCcCCcCCCcceec-----cc---------ccCCCc----c---c--eeCcccCcChhHHHhhcCccc
Confidence            45688999999999999642110     00         001110    0   0  012467999999999999875

>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family

Probab=97.13  E-value=0.00021  Score=64.76  Aligned_cols=52  Identities=15%  Similarity=0.254  Sum_probs=33.6

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +.++|+.||.|..+||+.....              ..  .++..   .   .  ......|+.||+|.++||+++
T Consensus       199 ~~~~C~~C~~C~~vCP~~~vl~--------------~~--~~~~~---~---~--~i~~~~C~~Cg~Cv~~CP~~A  250 (255)
T TIGR02163       199 DREKCTNCMDCFNVCPEPQVLR--------------MP--LKKGG---S---T--LVLSGDCTLCGRCIDVCHEDV  250 (255)
T ss_pred             ccccCeEcCCccCcCCCCceee--------------cc--ccCCC---c---e--EeccccccchhHHHHhCCccc
Confidence            4689999999999999642110              00  00000   0   0  112457999999999999875

Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.

>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed

Probab=97.07  E-value=0.00016  Score=59.25  Aligned_cols=51  Identities=27%  Similarity=0.490  Sum_probs=34.3

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+.++||.||.|..+||....           .      .  ++..   .   .  ......|+.||.|+.+||.++
T Consensus        55 ~~d~~~Ci~C~~C~~~CP~~ai-----------~------~--~~~~---~---~--~i~~~~C~~Cg~Cv~vCP~~a  105 (133)
T PRK09625         55 VHNNEICINCFNCWVYCPDAAI-----------L------S--RDKK---L---K--GVDYSHCKGCGVCVEVCPTNP  105 (133)
T ss_pred             EEehhHCcChhhHHHhCCHhhe-----------E------e--cCCc---e---E--EeCcCcCcChhHHHHHCCcCc
Confidence            3567899999999999994311           0      0  1100   0   0  012467999999999999996

>PF13484 Fer4_16: 4Fe-4S double cluster binding domain

Probab=97.04  E-value=0.00014  Score=51.94  Aligned_cols=64  Identities=19%  Similarity=0.497  Sum_probs=33.2

Q ss_pred             cCcccCcccCCCCCcccCCC---cccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670          191 ECILCACCSTSCPSYWWTSE---AYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG  262 (279)
Q Consensus       191 ~CI~CG~C~~~CP~~~~~~~---~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g  262 (279)
                      .|+.||+|+.+||......+   .+..+..    +.+...+....   +.. ...-...+.+..||.|..+||.+
T Consensus         1 ~C~~C~~C~~~CP~~AI~~~~~~~~~~~~~----~~~~~~~~~~~---~~~-~~~c~~~~~~~~C~~C~~vCP~N   67 (67)
T PF13484_consen    1 FCITCGKCAEACPTGAISGEDEPTWEPKGC----WSYNNPGVKKW---RID-WEKCVSYWDCYGCGICQKVCPFN   67 (67)
T ss_pred             CCcchhHHHHhCcHhhccCCCcCeeecCcc----hhccCccccCc---cch-HHhhhcCCCccccchhhccCCCC
Confidence            49999999999997654322   1111100    00000111100   000 11112346778999999999964

>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only

Probab=97.03  E-value=0.00011  Score=70.08  Aligned_cols=63  Identities=19%  Similarity=0.424  Sum_probs=36.2

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHH-HhhcccCccCchhhhhhhhhCCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLE-AIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~-~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      .+.++||.||.|+.+||......           ..+...++..    .++. ..........|+.||.|+.+||.++-
T Consensus         4 id~~kCi~Cg~Cv~~CP~~ai~~-----------~~~~~~~~~~----~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai   67 (374)
T TIGR02512         4 RDMSKCIGCGRCVRACTNVQIVG-----------ALGFLNRGGK----TEVAPKFGRLLDESNCIGCGQCSLVCPVGAI   67 (374)
T ss_pred             echhhCCcChHhhhhCCHhhccc-----------cccccccCCc----cccccccccccCcccCcCccCHHHhCCCChh
Confidence            45678999999999999653211           0000000000    0000 00011235789999999999998764

This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.

>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=96.98  E-value=0.00028  Score=36.12  Aligned_cols=15  Identities=33%  Similarity=0.911  Sum_probs=13.8

Q ss_pred             chhhhhhhhhCCCCC
Q 023670          249 CHTILNCARACPKGL  263 (279)
Q Consensus       249 C~~Cg~C~~vCP~gi  263 (279)
                      |+.|+.|+++||+|+
T Consensus         1 C~~C~~C~~~Cp~~A   15 (15)
T PF12798_consen    1 CTGCGACVEVCPTGA   15 (15)
T ss_pred             CCCchHHHHHhcCCC
Confidence            789999999999985

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family

Probab=96.96  E-value=0.00042  Score=63.62  Aligned_cols=67  Identities=24%  Similarity=0.450  Sum_probs=41.3

Q ss_pred             hhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC-
Q 023670          185 KLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL-  263 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi-  263 (279)
                      ...+..+||.||.|+.+||.....             +.+..+...     .   .  ......|..||.|+.+||.++ 
T Consensus        43 ~~~~~~~C~~C~~C~~~Cp~~a~~-------------~~~~~~~~~-----~---~--~~~~~~C~~Cg~C~~~CP~~Ai   99 (295)
T TIGR02494        43 LLFKENRCLGCGKCVEVCPAGTAR-------------LSELADGRN-----R---I--IIRREKCTHCGKCTEACPSGAL   99 (295)
T ss_pred             EEEccccCCCCchhhhhCcccccc-------------cccccCCCc-----c---e--eechhhcCchhHhhccCcHhHH
Confidence            345678999999999999954210             000001110     0   0  123568999999999999754 


Q ss_pred             -------ChHHHHHHHHH
Q 023670          264 -------NPGKQIINIKQ  274 (279)
Q Consensus       264 -------~~~~~I~~lR~  274 (279)
                             +..+++..+.+
T Consensus       100 ~~~g~~~t~eel~~~i~~  117 (295)
T TIGR02494       100 SIVGEEMTVEEVMRVVLR  117 (295)
T ss_pred             hhhccCCcHHHHHHHHHH
Confidence                   34555555554

This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0

>PRK06991 ferredoxin; Provisional

Probab=96.92  E-value=0.00027  Score=64.64  Aligned_cols=49  Identities=20%  Similarity=0.424  Sum_probs=33.0

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG  262 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g  262 (279)
                      .+.+.||.||.|+.+||+....                 .....      +.    ......|+.||.|+.+||++
T Consensus        82 id~~~CigCg~Cv~aCP~~AI~-----------------~~~~~------~~----~v~~~~CigCg~Cv~vCP~~  130 (270)
T PRK06991         82 IDEQLCIGCTLCMQACPVDAIV-----------------GAPKQ------MH----TVLADLCTGCDLCVPPCPVD  130 (270)
T ss_pred             EccccCCCCcHHHHhCCHhhee-----------------ccccc------ce----eeCHhhCCCchHHHhhCCcC
Confidence            4567999999999999953210                 00000      00    01235799999999999988

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=96.91  E-value=0.0014  Score=63.09  Aligned_cols=52  Identities=25%  Similarity=0.535  Sum_probs=39.5

Q ss_pred             EEEeccCCCchHHHHHHHcccCCCCCccccCCCCC-CccCeeEEEEC-Ce-------------------eeccccccccC
Q 023670           68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE-GICGSCAMNID-GC-------------------NGLACLTKISP  126 (279)
Q Consensus        68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~-g~CG~C~v~in-G~-------------------~~lAC~t~v~~  126 (279)
                      .++++++ |.|||||+++.|. .     ...+|+. |.||+|.|.|- |.                   .+|||.+.+..
T Consensus        42 ~~~~~~~-g~tlL~a~~~~gi-~-----i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rLaCq~~~~~  114 (405)
T TIGR01941        42 KSITVPA-GGKLLNTLASNGI-F-----ISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRLSCQVKVKQ  114 (405)
T ss_pred             eEEEECC-CChHHHHHHHcCC-C-----CcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEEEeeCEECC
Confidence            4456667 8999999999984 2     3356985 89999999973 42                   26899998874

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=96.87  E-value=0.0011  Score=62.03  Aligned_cols=37  Identities=32%  Similarity=0.694  Sum_probs=29.9

Q ss_pred             eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670           71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG  114 (279)
Q Consensus        71 ~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG  114 (279)
                      .+++ +.||||+|++.|.      ....+|+.|+||+|.+.+ .|
T Consensus       261 ~~~~-~~~lL~~~~~~gi------~~~~~C~~G~Cg~C~~~~~~G  298 (332)
T PRK10684        261 YAPV-GTTLLEALESNKV------PVVAACRAGVCGCCKTKVVSG  298 (332)
T ss_pred             EeCC-CChHHHHHHHcCC------CccCCCCCcCCCCCEEEEecC
Confidence            3346 7999999999883      255789999999999996 44

>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional

Probab=96.85  E-value=0.0002  Score=61.61  Aligned_cols=56  Identities=32%  Similarity=0.519  Sum_probs=35.1

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+..+|+.||.|+.+||......               ..+... .. ..   +  ......|+.||.|+.+||.++
T Consensus        34 ~~d~~~C~~C~~Cv~~CP~~ai~~---------------~~~~~~-~~-~~---~--~i~~~~C~~Cg~C~~vCP~~A   89 (180)
T PRK12387         34 EYNPQQCIGCAACVNACPSNALTV---------------ETDLAT-GE-LA---W--EFNLGRCIFCGRCEEVCPTAA   89 (180)
T ss_pred             EEChhhCcChhHHHHhcCccCeEe---------------eccccC-Cc-cc---c--eeccccCcCccchhhhcCcCc
Confidence            345789999999999999643210               000000 00 00   1  123578999999999999864

>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed

Probab=96.81  E-value=0.00028  Score=55.53  Aligned_cols=50  Identities=24%  Similarity=0.418  Sum_probs=33.5

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+..+|+.|+.|+.+||.....                 .+..+     .   .  ......|+.||.|+.+||.++
T Consensus        48 ~d~~~Ci~C~~C~~~CP~~ai~-----------------~~~~~-----~---~--~id~~~C~~Cg~Cv~~CP~~A   97 (105)
T PRK09624         48 FNRDKCVRCYLCYIYCPEPAIY-----------------LDEEG-----Y---P--VFDYDYCKGCGICANECPTKA   97 (105)
T ss_pred             EChhHCcChhhHHhhCCHhhEE-----------------ecCCC-----c---E--EECchhCCCcCchhhhcCcCc
Confidence            4567899999999999953211                 00000     0   0  012357999999999999875

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=96.81  E-value=0.00038  Score=67.39  Aligned_cols=55  Identities=27%  Similarity=0.471  Sum_probs=33.6

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC-CC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK-GL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~-gi  263 (279)
                      .+.++|+.||.|..+||.....            +..+..++..     .   .  ......|+.||.|+.+||. +.
T Consensus       339 ~~~~~C~~C~~C~~~Cp~~~~~------------ai~~~~~~~~-----~---~--~i~~~~C~~Cg~C~~~CP~~~A  394 (420)
T PRK08318        339 IDQDKCIGCGRCYIACEDTSHQ------------AIEWDEDGTR-----T---P--EVIEEECVGCNLCAHVCPVEGC  394 (420)
T ss_pred             ECHHHCCCCCcccccCCCcchh------------heeeccCCCc-----e---E--EechhhCcccchHHhhCCCCCC
Confidence            4567999999999999953100            1111000110     0   0  1124669999999999998 54

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=96.80  E-value=0.002  Score=62.17  Aligned_cols=51  Identities=27%  Similarity=0.601  Sum_probs=39.1

Q ss_pred             EEeccCCCchHHHHHHHcccCCCCCccccCCCCC-CccCeeEEEE-CCe-------------------eeccccccccC
Q 023670           69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE-GICGSCAMNI-DGC-------------------NGLACLTKISP  126 (279)
Q Consensus        69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~-g~CG~C~v~i-nG~-------------------~~lAC~t~v~~  126 (279)
                      ++++++ |.|||||+.+.|. .     ...+|+. |.||+|.|.| .|.                   .+|||.+.+..
T Consensus        47 ~~~~~~-g~tLL~a~~~~gi-~-----i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq~~~~~  118 (409)
T PRK05464         47 TITVPA-GGKLLGALASNGI-F-----LSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQVKVKQ  118 (409)
T ss_pred             EEEECC-CchHHHHHHHcCC-C-----cccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEeeCEECC
Confidence            456667 8999999999984 2     3357995 9999999997 452                   25799998863

>COG1146 Ferredoxin [Energy production and conversion]

Probab=96.79  E-value=0.00053  Score=49.42  Aligned_cols=51  Identities=25%  Similarity=0.539  Sum_probs=33.6

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG  262 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g  262 (279)
                      +..+|+.||.|+.+||...+.               +..+.+.     +  .+  ......|+.||.|..+||++
T Consensus         6 d~~~C~~c~~C~~~CP~~~~~---------------~~~~~~~-----~--~~--~~~~e~C~~C~~C~~~CP~~   56 (68)
T COG1146           6 DYDKCIGCGICVEVCPAGVFD---------------LGEDEGG-----K--PV--VARPEECIDCGLCELACPVG   56 (68)
T ss_pred             CchhcCCCChheeccChhhEE---------------eccccCc-----c--ee--EeccccCccchhhhhhCCcc
Confidence            456699999999999965321               0000000     0  01  12467899999999999998

>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit

Probab=96.75  E-value=0.00047  Score=58.52  Aligned_cols=52  Identities=21%  Similarity=0.445  Sum_probs=34.7

Q ss_pred             hhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          185 KLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+.+.++|+.||.|..+||.....                 .+.+..      ..+    ....|+.||.|+.+||+++
T Consensus       108 ~~id~~~Ci~Cg~C~~aCp~~ai~-----------------~~~~~~------~~i----~~~~C~~Cg~Cv~~CP~~A  159 (165)
T TIGR01944       108 ALIDEDNCIGCTKCIQACPVDAIV-----------------GAAKAM------HTV----IADECTGCDLCVEPCPTDC  159 (165)
T ss_pred             EEEECCcCCChhHHHHhCCccceE-----------------ecCCCc------eEe----ecccccChhHHHHhcCcCc
Confidence            345678999999999999943210                 000100      001    2367999999999999876

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.

>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed

Probab=96.74  E-value=0.00046  Score=54.22  Aligned_cols=51  Identities=22%  Similarity=0.425  Sum_probs=34.0

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+.++|+.||.|+.+||....               .+..++.          .  ......|..||.|..+||.++
T Consensus        47 ~i~~~~Ci~C~~C~~~CP~~ai---------------~~~~~~~----------~--~id~~~C~~Cg~Cv~~CP~~A   97 (105)
T PRK09623         47 VVDESKCVKCYICWKFCPEPAI---------------YIKEDGY----------V--AIDYDYCKGCGICANECPTKA   97 (105)
T ss_pred             EECcccCccccchhhhCCHhhe---------------EecCCCc----------E--EeCchhCcCcchhhhhcCcCc
Confidence            4567899999999999994211               0000000          0  113467999999999999875

>PRK08764 ferredoxin; Provisional

Probab=96.73  E-value=0.00049  Score=56.50  Aligned_cols=48  Identities=23%  Similarity=0.465  Sum_probs=32.5

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .++||.||.|+.+||...+.               +  +.+.      ..    ......|+.||.|+.+||+++
T Consensus        84 ~~~Ci~C~~Cv~aCp~~ai~---------------~--~~~~------~~----~v~~~~C~~Cg~Cv~~CP~~A  131 (135)
T PRK08764         84 EADCIGCTKCIQACPVDAIV---------------G--GAKH------MH----TVIAPLCTGCELCVPACPVDC  131 (135)
T ss_pred             cccCcCcchHHHhCChhhcC---------------c--cCCC------ce----eecCCcCcCccchhhhcCccc
Confidence            36899999999999943211               0  0110      00    012467999999999999986

>TIGR00402 napF ferredoxin-type protein NapF

Probab=96.73  E-value=0.00044  Score=53.87  Aligned_cols=51  Identities=24%  Similarity=0.492  Sum_probs=33.5

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....|+.|+.|+.+||...+..               ..++..     .   +  ......|+.||.|..+||.++
T Consensus        32 ~~~~C~~C~~C~~~CP~~~i~~---------------~~~g~~-----~---~--~i~~~~C~~Cg~C~~~CP~~A   82 (101)
T TIGR00402        32 FSAVCTRCGECASACENNILQL---------------GQQGQP-----T---V--EFDNAECDFCGKCAEACPTNA   82 (101)
T ss_pred             CcCcCcChhHHHHHcCccccee---------------ccCCce-----e---e--EecCccCcCccChhhHCCccc
Confidence            4568999999999999643210               000000     0   0  112457999999999999876

The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.

>PRK09326 F420H2 dehydrogenase subunit F; Provisional

Probab=96.71  E-value=0.00024  Score=67.01  Aligned_cols=61  Identities=28%  Similarity=0.497  Sum_probs=35.0

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG  262 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g  262 (279)
                      +.+...|+.||.|..+||.....-..  ++        ...++..      ..........+.|+.||.|..+||..
T Consensus         8 vi~~~~C~gCg~C~~~CP~~aI~~~~--~~--------~~~~~~~------~~~~~~~~d~~~C~~Cg~C~~vCP~~   68 (341)
T PRK09326          8 VIEYDVCTACGACEAVCPIGAITVDK--KA--------EIRDPND------LELYEKGAAPNVCEGCLTCSRICPVV   68 (341)
T ss_pred             EECcccCcChHHHHHhCCHhhheccc--Cc--------ccccccc------hhhhccCCCcCcCcCcCchhhhCCCC
Confidence            44567899999999999954211000  00        0000000      00011112467899999999999973

>PRK10194 ferredoxin-type protein; Provisional

Probab=96.60  E-value=0.00043  Score=58.48  Aligned_cols=18  Identities=22%  Similarity=0.709  Sum_probs=15.3

Q ss_pred             ccccCcccCcccCCCCCc
Q 023670          188 GMYECILCACCSTSCPSY  205 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~  205 (279)
                      ...+||.||.|+.+||..
T Consensus        32 ~~~~C~~Cg~C~~aCp~~   49 (163)
T PRK10194         32 FLTHCTRCDACINACENN   49 (163)
T ss_pred             HhhhCcChhHHHHHcChh
Confidence            467899999999999954

>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family

Probab=96.57  E-value=0.00051  Score=50.55  Aligned_cols=51  Identities=22%  Similarity=0.357  Sum_probs=34.0

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+..+|+.|+.|..+||.....               +..++.          .  ......|..|+.|+.+||.++
T Consensus        21 ~i~~~~C~~C~~C~~~Cp~~ai~---------------~~~~~~----------~--~i~~~~C~~C~~C~~~CP~~A   71 (78)
T TIGR02179        21 VVDKEKCIKCKNCWLYCPEGAIQ---------------EDEGGF----------V--GIDYDYCKGCGICANVCPVKA   71 (78)
T ss_pred             EEcCCcCcChhHHHhhcCccceE---------------ecCCCc----------E--EecCccCcCccchhhhCCccc
Confidence            44568899999999999954211               000000          0  012357999999999999875

A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.

>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=96.55  E-value=0.00056  Score=38.52  Aligned_cols=19  Identities=32%  Similarity=0.931  Sum_probs=16.7

Q ss_pred             hcccccCcccCcccCCCCC
Q 023670          186 LDGMYECILCACCSTSCPS  204 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~  204 (279)
                      +.|.++||.|+.|+.+||+
T Consensus         4 ~iD~~rCiGC~~C~~AC~~   22 (22)
T PF12797_consen    4 VIDLERCIGCGACEVACPV   22 (22)
T ss_pred             EEccccccCchhHHHhhCc
Confidence            4578999999999999984

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>TIGR02912 sulfite_red_C sulfite reductase, subunit C

Probab=96.50  E-value=0.00043  Score=64.52  Aligned_cols=52  Identities=23%  Similarity=0.496  Sum_probs=34.2

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+..+|+.||.|+.+||....      +      +..+ .++.          +  ......|+.||.|+.+||+++
T Consensus       166 ~d~~~C~~Cg~C~~~Cp~~a~------~------ai~~-~~~~----------~--~id~~~C~~Cg~Cv~~CP~~A  217 (314)
T TIGR02912       166 YDADRCIGCGACVKVCKKKAV------G------ALSF-ENYK----------V--VRDHSKCIGCGECVLKCPTGA  217 (314)
T ss_pred             eeCccCCcchHHHHhcChhhc------C------ceec-cCCe----------E--EeCCCcCcCcchhhhhCCHhh
Confidence            456789999999999995321      0      0111 0000          1  113568999999999999874

Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.

>PRK09898 hypothetical protein; Provisional

Probab=96.50  E-value=0.0016  Score=57.28  Aligned_cols=47  Identities=32%  Similarity=0.658  Sum_probs=33.0

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+..+||.|+.|+.+||....               .  .+...             .....|+.||.|+++||+++
T Consensus       151 vd~~~CigC~~C~~aCP~~ai---------------~--~~~~~-------------~~~~kC~~Cg~Cv~~CP~~A  197 (208)
T PRK09898        151 VDHKRCIGCSACTTACPWMMA---------------T--VNTES-------------KKSSKCVLCGECANACPTGA  197 (208)
T ss_pred             eccccCCCcCcccccCCCCCC---------------E--ecCCC-------------CcCCcCcChHHHHHhCCccc
Confidence            456789999999999995321               0  01010             02467999999999999986

>PRK10882 hydrogenase 2 protein HybA; Provisional

Probab=96.44  E-value=0.0016  Score=61.24  Aligned_cols=32  Identities=19%  Similarity=0.495  Sum_probs=24.9

Q ss_pred             ccCchhhhh-------------hhhhCCCCC----ChHHHHHHHHHHHH
Q 023670          246 LYRCHTILN-------------CARACPKGL----NPGKQIINIKQLQL  277 (279)
Q Consensus       246 ~~~C~~Cg~-------------C~~vCP~gi----~~~~~I~~lR~~~~  277 (279)
                      ...|+.|+.             |+.+||+|+    +..+++..+++++.
T Consensus       171 ~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~~el~~~a~~ri~  219 (328)
T PRK10882        171 IHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREELLAEAKRRLA  219 (328)
T ss_pred             eeecccccccchhhhhcCCCChhhhhccccceEeccHHHHHHHHHHHHH
Confidence            578999999             999999876    35667777776654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.39  E-value=0.0046  Score=64.20  Aligned_cols=45  Identities=24%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             HHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccc
Q 023670           79 VLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTK  123 (279)
Q Consensus        79 vLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~  123 (279)
                      +.++|++.|....=+|.-+..|..|+||+|.|.+.|...+.|..-
T Consensus       196 v~~~l~~~gv~~~~Sle~~M~CG~G~C~~C~v~~~~~~~~~C~dG  240 (752)
T PRK12778        196 VCLLTKKYGIPTIVSLNTIMVDGTGMCGACRVTVGGKTKFACVDG  240 (752)
T ss_pred             HHHHHHHcCCCEEEeCcccccCcccccCcceeEeCCCeEEEECCC
Confidence            344444444221224555667999999999999988656788654

>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]

Probab=96.39  E-value=0.0011  Score=58.04  Aligned_cols=59  Identities=27%  Similarity=0.420  Sum_probs=41.2

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhh------h---hhh
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTI------L---NCA  256 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~C------g---~C~  256 (279)
                      +.+.+.||.||.|..+||... .   ++.             . +            ....+.|++|      |   .|+
T Consensus        96 ~vd~d~CIGC~yCi~ACPyga-~---~~~-------------~-~------------~~~~~KCt~C~~ri~~g~~PaCV  145 (203)
T COG0437          96 LVDKDLCIGCGYCIAACPYGA-P---QFN-------------P-D------------KGVVDKCTFCVDRVAVGKLPACV  145 (203)
T ss_pred             EecCCcccCchHHHhhCCCCC-c---eeC-------------c-c------------cCcccccCcchhhHhcCCCCccc
Confidence            456789999999999999431 0   100             0 0            0126789999      8   999


Q ss_pred             hhCCCCCChHHHHHHHHH
Q 023670          257 RACPKGLNPGKQIINIKQ  274 (279)
Q Consensus       257 ~vCP~gi~~~~~I~~lR~  274 (279)
                      ++||.++-.-.-|.+++.
T Consensus       146 ~~CP~~A~~fG~~~d~~~  163 (203)
T COG0437         146 EACPTGALIFGDIDDPKS  163 (203)
T ss_pred             ccCCcccccccchhhcch
Confidence            999999876556666654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.38  E-value=0.0053  Score=65.79  Aligned_cols=33  Identities=30%  Similarity=0.560  Sum_probs=26.4

Q ss_pred             CccccCCCCCCccCeeEEEECCeeecccccccc
Q 023670           93 SLTFRRSCREGICGSCAMNIDGCNGLACLTKIS  125 (279)
Q Consensus        93 tl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~  125 (279)
                      +|.-+..|..|+||.|.|.++|...++|..-..
T Consensus       210 Sle~~M~cG~G~Cg~C~v~~~~~~~~~C~DGPv  242 (1006)
T PRK12775        210 SLNAIMVDGTGMCGSCRVTVGGEVKFACVDGPD  242 (1006)
T ss_pred             CChhheeCccceeCCCEeeeCCceEEEeCCCCe
Confidence            455566799999999999999977889975433

>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=96.29  E-value=0.0012  Score=38.08  Aligned_cols=18  Identities=33%  Similarity=0.826  Sum_probs=15.8

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||.|+.+||.++
T Consensus         6 ~~~C~~Cg~C~~~Cp~~a   23 (24)
T PF12837_consen    6 PDKCIGCGDCVRVCPEGA   23 (24)
T ss_pred             hhhCcChhHHHHhcchhc
Confidence            467999999999999864

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=96.27  E-value=0.00087  Score=61.01  Aligned_cols=48  Identities=19%  Similarity=0.355  Sum_probs=32.9

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG  262 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g  262 (279)
                      +..+|+.||.|..+|+....               -++ .++.         .  ....+.|+.||.|..+||.+
T Consensus        67 ~~e~C~~CG~C~~vC~f~Ai---------------~~~-~~~~---------~--~~~~~lC~GCgaC~~~CP~~  114 (284)
T COG1149          67 DPEKCIRCGKCAEVCRFGAI---------------VVL-PGGK---------P--VLNPDLCEGCGACSIVCPEP  114 (284)
T ss_pred             ChhhccccCcHHHhCCCCeE---------------EEc-CCCc---------e--ecCcccccCcccceeeCCCc
Confidence            45679999999999995321               111 1111         0  01358899999999999987

>COG2768 Uncharacterized Fe-S center protein [General function prediction only]

Probab=96.16  E-value=0.0017  Score=59.81  Aligned_cols=57  Identities=21%  Similarity=0.380  Sum_probs=39.4

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHH
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGK  267 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~  267 (279)
                      .-.+|+.||.|+..||+.....            +       +         . ...+...|+.||+|.++||.|+ ...
T Consensus       191 ~e~kc~~c~~cv~~cp~~Ai~~------------~-------~---------~-~~I~~~~ci~c~~c~~ac~~ga-v~~  240 (354)
T COG2768         191 VEEKCYDCGLCVKICPVGAITL------------T-------K---------V-VKIDYEKCIGCGQCMEACPYGA-VDQ  240 (354)
T ss_pred             eeecccccchhhhhCCCcceec------------c-------c---------c-eeechhhccchhhhhhhccCcc-ccc
Confidence            4468999999999999754210            0       0         0 1235677999999999999998 344


Q ss_pred             HHHHHHH
Q 023670          268 QIINIKQ  274 (279)
Q Consensus       268 ~I~~lR~  274 (279)
                      .|.+.+.
T Consensus       241 ~W~~~~~  247 (354)
T COG2768         241 NWEEDSP  247 (354)
T ss_pred             chhhccH
Confidence            5554443

>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=96.06  E-value=0.0036  Score=33.03  Aligned_cols=15  Identities=40%  Similarity=1.132  Sum_probs=13.7

Q ss_pred             ccCcccCcccCCCCC
Q 023670          190 YECILCACCSTSCPS  204 (279)
Q Consensus       190 ~~CI~CG~C~~~CP~  204 (279)
                      ++||.|+.|+.+||.
T Consensus         2 ~~C~~C~~C~~~Cp~   16 (17)
T PF12800_consen    2 ERCIGCGSCVDVCPT   16 (17)
T ss_dssp             CCCTTSSSSTTTSTT
T ss_pred             CcCCCCchHHhhccC
Confidence            579999999999995

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=96.06  E-value=0.0024  Score=61.84  Aligned_cols=50  Identities=32%  Similarity=0.668  Sum_probs=34.0

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +.+.++|+.|+.|+.+||.....                 .+...    .   .+    ....|+.|+.|..+||.+.
T Consensus         6 ~id~~~Ci~C~~C~~~CP~~ai~-----------------~~~~~----~---~i----~~~~C~~C~~C~~~CP~~A   55 (411)
T TIGR03224         6 LIDPEICIRCNTCEETCPIDAIT-----------------HDDRN----Y---VV----KADVCNGCMACVSPCPTGA   55 (411)
T ss_pred             eeCcccCcCccchhhhCCcccEe-----------------ccCCc----e---Ee----CcccCcCHHHHHhhcCccc
Confidence            34678899999999999954211                 00010    0   01    2456999999999999874

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=96.06  E-value=0.0027  Score=36.46  Aligned_cols=18  Identities=28%  Similarity=0.551  Sum_probs=15.2

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||.|..+||.++
T Consensus         5 ~~~C~~Cg~C~~~CP~~a   22 (24)
T PF00037_consen    5 PDKCIGCGRCVEACPFDA   22 (24)
T ss_dssp             TTTSSS-THHHHHSTTSS
T ss_pred             hHHCCCcchhhhhccccc
Confidence            467999999999999986

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....

>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit

Probab=96.04  E-value=0.0026  Score=52.15  Aligned_cols=52  Identities=25%  Similarity=0.510  Sum_probs=33.6

Q ss_pred             cccccCcccC-----cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670          187 DGMYECILCA-----CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK  261 (279)
Q Consensus       187 ~~~~~CI~CG-----~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~  261 (279)
                      .+..+|+.||     .|+.+||.....                 .+....    .  ..  ......|+.||.|+.+||.
T Consensus         5 v~~~~C~gC~~~~~~~Cv~~CP~~ai~-----------------~~~~~~----~--~~--~id~~~C~~Cg~Cv~~CP~   59 (132)
T TIGR02060         5 VYPTKCDGCKAGEKTACVYICPNDLMH-----------------LDTEIM----K--AY--NIEPDMCWECYSCVKACPQ   59 (132)
T ss_pred             EccccccCccCCchhcCHhhcCccceE-----------------ecCCCc----e--ee--ecCchhCccHHHHHHhCCc
Confidence            3567899999     999999954211                 010000    0  00  0124679999999999998


Q ss_pred             CC
Q 023670          262 GL  263 (279)
Q Consensus       262 gi  263 (279)
                      ++
T Consensus        60 ~A   61 (132)
T TIGR02060        60 GA   61 (132)
T ss_pred             Cc
Confidence            65

During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.

>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]

Probab=95.92  E-value=0.0067  Score=57.49  Aligned_cols=79  Identities=20%  Similarity=0.378  Sum_probs=57.3

Q ss_pred             eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC----Ce-----eecccccccc--CCCCceEEeeCCC-
Q 023670           71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID----GC-----NGLACLTKIS--PSGSASTITPLPH-  138 (279)
Q Consensus        71 ~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in----G~-----~~lAC~t~v~--~g~~~~~iepl~~-  138 (279)
                      ++++ ..||||-|+.-.. .   -....+|-+|-||.|+|.|.    |.     .|=||...+.  +|++.+++|.|++ 
T Consensus        22 ~v~P-~~TlLd~LR~d~~-l---tGtKEGCAEGDCGACTVlVgrl~~g~~l~yeSVNACirfl~sL~G~hvvTvE~L~~~   96 (493)
T COG4630          22 DVPP-TTTLLDYLRLDRR-L---TGTKEGCAEGDCGACTVLVGRLVDGGSLRYESVNACIRFLGSLDGTHVVTVEHLRGQ   96 (493)
T ss_pred             cCCc-chHHHHHHHHhcc-c---ccccccccCCCcCceEEEEEeecCCCceeeeehhHHHHHHhhcCCceEEEehhhcCC
Confidence            4456 6899999996431 2   33667899999999999874    43     3449999998  7889999999985 


Q ss_pred             ---Ccchhhhhhccchhhh
Q 023670          139 ---MFVIKDLVVDMTNFYN  154 (279)
Q Consensus       139 ---~~vikDLvvD~~~~~~  154 (279)
                         +.-++.-+||.+.-.+
T Consensus        97 ~g~LHpVQqamvd~hGSQC  115 (493)
T COG4630          97 DGTLHPVQQAMVDFHGSQC  115 (493)
T ss_pred             CCCcCHHHHHHHhccCCcc
Confidence               2224555677766444

>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=95.92  E-value=0.0013  Score=37.85  Aligned_cols=18  Identities=33%  Similarity=0.755  Sum_probs=15.8

Q ss_pred             cccccCcccCcccCCCCC
Q 023670          187 DGMYECILCACCSTSCPS  204 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~  204 (279)
                      .+.++|+.||.|+.+||.
T Consensus         4 id~~~C~~Cg~C~~~Cp~   21 (24)
T PF12837_consen    4 IDPDKCIGCGDCVRVCPE   21 (24)
T ss_pred             EChhhCcChhHHHHhcch
Confidence            356789999999999995

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein

Probab=95.67  E-value=0.0058  Score=54.45  Aligned_cols=47  Identities=19%  Similarity=0.474  Sum_probs=32.5

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh----------hhh
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL----------NCA  256 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg----------~C~  256 (279)
                      .+..+|+.||.|..+||....    +           +  +..             ......|+.|+          .|+
T Consensus       122 id~~~C~~C~~C~~aCP~~A~----~-----------~--~~~-------------~~~~~kC~~C~~~~~~~g~~P~Cv  171 (225)
T TIGR03149       122 VHKDLCVGCQYCIAACPYRVR----F-----------I--HPV-------------TKSADKCNFCRDTNLAEGKLPACV  171 (225)
T ss_pred             echhhCCcchHHHHhCCCCCc----E-----------e--cCC-------------CCccccCCCCCcchhhCCCCCccc
Confidence            345789999999999995320    0           0  000             01246899998          799


Q ss_pred             hhCCCCC
Q 023670          257 RACPKGL  263 (279)
Q Consensus       257 ~vCP~gi  263 (279)
                      ++||+++
T Consensus       172 ~~Cp~~A  178 (225)
T TIGR03149       172 ESCPTKA  178 (225)
T ss_pred             ccCccCC
Confidence            9999876

Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.

>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG

Probab=95.58  E-value=0.0052  Score=59.86  Aligned_cols=40  Identities=30%  Similarity=0.633  Sum_probs=29.5

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK  261 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~  261 (279)
                      ..+|+.|+.|+.+||... .                   .++.             ....|+.||.|.++||.
T Consensus       230 ~~~Ci~C~~Cv~vCP~gi-~-------------------~~~~-------------~~~~Ci~Cg~CidaCp~  269 (434)
T TIGR02745       230 LGDCIDCNLCVQVCPTGI-D-------------------IRDG-------------LQLECINCGLCIDACDD  269 (434)
T ss_pred             CCCCCChhhhHHhCCCCC-E-------------------eCCC-------------CchhChhhhHHHHhCCC
Confidence            468999999999999531 0                   0110             12469999999999996

Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.

>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein

Probab=95.56  E-value=0.0021  Score=56.89  Aligned_cols=56  Identities=30%  Similarity=0.637  Sum_probs=32.8

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh--hhhhhCCCCC
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL--NCARACPKGL  263 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg--~C~~vCP~gi  263 (279)
                      +.+||.||.|+.+||......            ..+ .+...... .   .+.  .....|..|+  .|+.+||+++
T Consensus        52 ~~~Ci~Cg~Cv~aCP~~ai~~------------~~~-~~~~~~g~-p---~~~--~~~~~C~~C~d~~Cv~~CP~~A  109 (213)
T TIGR00397        52 LAACVRCGLCVEACPYDILSL------------ASW-SDPAPLGT-P---FFT--PREVPCRMCKDIPCARACPTGA  109 (213)
T ss_pred             cccccchhHHHHhCCcccccc------------ccc-ccccccCC-c---ccc--ccCCcCCCCCCchHHhHcCHhh
Confidence            479999999999999643210            000 00000000 0   010  1235699999  6999999986

MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.

>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=95.56  E-value=0.005  Score=32.48  Aligned_cols=16  Identities=31%  Similarity=0.733  Sum_probs=13.7

Q ss_pred             cCchhhhhhhhhCCCC
Q 023670          247 YRCHTILNCARACPKG  262 (279)
Q Consensus       247 ~~C~~Cg~C~~vCP~g  262 (279)
                      ..|+.|+.|+.+||.+
T Consensus         2 ~~C~~C~~C~~~Cp~~   17 (17)
T PF12800_consen    2 ERCIGCGSCVDVCPTQ   17 (17)
T ss_dssp             CCCTTSSSSTTTSTT-
T ss_pred             CcCCCCchHHhhccCC
Confidence            4699999999999974

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.

>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family

Probab=95.56  E-value=0.0026  Score=56.92  Aligned_cols=48  Identities=25%  Similarity=0.564  Sum_probs=32.8

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +..+|+.|+.|..+||.....               . .++.          .  ......|..||.|..+||.+.
T Consensus       146 d~~~C~~C~~C~~~CP~~ai~---------------~-~~~~----------~--~i~~~~C~~Cg~C~~~CP~~A  193 (234)
T TIGR02700       146 DRKRCKGCGICVDACPRSAID---------------M-VDGK----------A--FIRLLKCVGCGKCKEACPYNA  193 (234)
T ss_pred             ChhHCcCcchHHHhCCcccEE---------------e-cCCc----------e--EEchhhCCccchHHhhCCCCc
Confidence            457899999999999953210               0 0000          0  113457999999999999875

This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.

>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]

Probab=95.35  E-value=0.003  Score=47.99  Aligned_cols=51  Identities=24%  Similarity=0.400  Sum_probs=34.7

Q ss_pred             hhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670          185 KLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK  261 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~  261 (279)
                      ...+..+||.|+.|.--||......                   .+.....       ......|-.||-|..+||+
T Consensus        30 Pv~d~~kCi~C~~C~~yCPe~~i~~-------------------~~~~~~~-------~idYdyCKGCGICa~vCP~   80 (91)
T COG1144          30 PVVDEDKCINCKLCWLYCPEPAILE-------------------EEGGYKV-------RIDYDYCKGCGICANVCPV   80 (91)
T ss_pred             eEEcccccccCceeEEECCchheee-------------------ccCCccc-------eeEcccccCceechhhCCh
Confidence            3456789999999999999653210                   1100000       0235789999999999998

>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=95.18  E-value=0.0042  Score=35.67  Aligned_cols=18  Identities=33%  Similarity=0.778  Sum_probs=14.8

Q ss_pred             ccccCcccCcccCCCCCc
Q 023670          188 GMYECILCACCSTSCPSY  205 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~  205 (279)
                      +.++|+.||.|+.+||..
T Consensus         4 d~~~C~~Cg~C~~~CP~~   21 (24)
T PF00037_consen    4 DPDKCIGCGRCVEACPFD   21 (24)
T ss_dssp             ETTTSSS-THHHHHSTTS
T ss_pred             chHHCCCcchhhhhcccc
Confidence            567899999999999964

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=95.17  E-value=0.012  Score=59.60  Aligned_cols=46  Identities=28%  Similarity=0.511  Sum_probs=32.0

Q ss_pred             cccccCcccCcccC--CCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCST--SCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~--~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+..+|+.||.|..  .||....                  .+++       . .+    .. .|+.||.|+.+||.++
T Consensus       547 id~~~C~~C~~C~~~~~CP~~~~------------------~~~~-------~-~i----~~-~C~~Cg~C~~~CP~~A  594 (595)
T TIGR03336       547 VDQDKCIGCKKCIKELGCPAIEP------------------EDKE-------A-VI----DP-LCTGCGVCAQICPFDA  594 (595)
T ss_pred             EcCCcCCCccccccccCCCCccc------------------cCCc-------c-ee----CC-CCcCHHHHHhhCcccc
Confidence            45679999999999  9994310                  0000       0 11    12 5999999999999874

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>TIGR00276 iron-sulfur cluster binding protein, putative

Probab=95.16  E-value=0.013  Score=54.11  Aligned_cols=68  Identities=15%  Similarity=0.257  Sum_probs=36.2

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCch-hhhhhhhhCCCCCC
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCH-TILNCARACPKGLN  264 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~-~Cg~C~~vCP~gi~  264 (279)
                      ...|..|+.|..+||+.....+..+.+..-+. +.. .+.+....++ +.   .  ....|+ .|+.|..+||.+..
T Consensus       158 ~~~C~~C~~C~~aCPt~AI~~~~~~d~~~C~s-y~t-i~~~~~~~~~-~~---~--~~~~~~~gCd~Cq~vCP~n~~  226 (282)
T TIGR00276       158 EEYCGRCTKCIDACPTQALVEPEFVDAPRCIS-YLT-IEKDAALPKE-FA---S--NCGGRSYGCDICQEVCPWNKK  226 (282)
T ss_pred             CCCCccHHHHHHhcCcccccCCCccCHHHHHH-Hhc-ccCCCcCCHH-HH---H--HhcCcccCCCCccccCCCCCC
Confidence            35799999999999986543222233322111 111 1111111111 11   1  234454 59999999998764

This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.

>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein

Probab=95.07  E-value=0.0086  Score=57.38  Aligned_cols=47  Identities=26%  Similarity=0.509  Sum_probs=32.1

Q ss_pred             hcccccCcccCccc--CCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCS--TSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~--~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+..+|+.|+.|.  .+||.....                    .+.       .+    ....|..||.|+.+||.++
T Consensus       298 ~id~dkCi~Cg~C~~~~aCPt~AI~--------------------~~~-------~I----d~~~Ci~CGaCV~aCP~~A  346 (391)
T TIGR03287       298 KYNPERCENCDPCLVEEACPVPAIK--------------------KDG-------TL----NTEDCFGCGYCAEICPGGA  346 (391)
T ss_pred             EEchhhCcCCCCCcCCcCCCHhhEe--------------------ccc-------ee----ChHhCcChHHHHhhCCccc
Confidence            34567899999995  899953210                    000       01    2356999999999999754

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.

>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing

Probab=95.02  E-value=0.011  Score=54.41  Aligned_cols=31  Identities=16%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             ccCchhhh---------hhhhhCCCCC----ChHHHHHHHHHHH
Q 023670          246 LYRCHTIL---------NCARACPKGL----NPGKQIINIKQLQ  276 (279)
Q Consensus       246 ~~~C~~Cg---------~C~~vCP~gi----~~~~~I~~lR~~~  276 (279)
                      ...|+.|.         .|+.+||+++    +..+++...++++
T Consensus       150 ~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~~~~~~a~~r~  193 (283)
T TIGR01582       150 PYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKERAEKRV  193 (283)
T ss_pred             hhhhcccccccccCCCChHhCcccHhhEEECCHHHHHHHHHHHH
Confidence            35688884         8999999886    3355555555443

In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.

>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]

Probab=94.90  E-value=0.047  Score=58.21  Aligned_cols=69  Identities=22%  Similarity=0.263  Sum_probs=51.4

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECC-----e----eecccccccc--CCCCceEEe
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDG-----C----NGLACLTKIS--PSGSASTIT  134 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG-----~----~~lAC~t~v~--~g~~~~~ie  134 (279)
                      +.|+++.-++++|++.-||+.-    +--....+|.+|-||+|.|++-.     +    .+=||.|++-  .|...+++|
T Consensus        10 ~~~~~~~vdP~~TL~~fLR~k~----~ltgtKlgC~EGGCGaCtv~ls~~dp~~~~~~~avNsCLt~l~s~~g~~VtT~E   85 (1257)
T KOG0430|consen   10 KRVEVELLPPDLTLNTFLREKL----GLTGTKLGCGEGGCGACTVVLSKYDPELKVRHWAVNSCLTLLNSVHGLEVTTSE   85 (1257)
T ss_pred             EEeeEecCCcchhHHHHHHHhc----CCcceeeccCCCCccceEEEEeccCCCceeEEeehhhhhhhcccccceEEEeee
Confidence            4555554333899999999853    12335568999999999999876     2    2349999998  567788899


Q ss_pred             eCCC
Q 023670          135 PLPH  138 (279)
Q Consensus       135 pl~~  138 (279)
                      .|.+
T Consensus        86 GlGn   89 (1257)
T KOG0430|consen   86 GLGN   89 (1257)
T ss_pred             cccc
Confidence            9886

>TIGR01660 narH nitrate reductase, beta subunit

Probab=94.89  E-value=0.0089  Score=58.16  Aligned_cols=18  Identities=39%  Similarity=0.683  Sum_probs=11.1

Q ss_pred             ccccCcccC--cccCCCCCc
Q 023670          188 GMYECILCA--CCSTSCPSY  205 (279)
Q Consensus       188 ~~~~CI~CG--~C~~~CP~~  205 (279)
                      ....|++|+  .|+.+||..
T Consensus       179 ~p~~C~HC~nP~CV~ACPtG  198 (492)
T TIGR01660       179 LPRLCEHCLNPACVASCPSG  198 (492)
T ss_pred             CCCcCcCCCcccchhhCccC
Confidence            345666666  666666643

The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.

>PRK10194 ferredoxin-type protein; Provisional

Probab=94.84  E-value=0.0056  Score=51.64  Aligned_cols=19  Identities=32%  Similarity=0.891  Sum_probs=16.0

Q ss_pred             ccccCcccCcccCCCCCcc
Q 023670          188 GMYECILCACCSTSCPSYW  206 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~  206 (279)
                      +...|+.|+.|..+||+..
T Consensus        64 ~~~~C~~C~~C~~~CP~~a   82 (163)
T PRK10194         64 KNNECSFCYACAQACPESL   82 (163)
T ss_pred             cCCCCCCchhhHhhCcchh
Confidence            3567999999999999853

>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit

Probab=94.84  E-value=0.0076  Score=56.17  Aligned_cols=18  Identities=22%  Similarity=0.672  Sum_probs=15.8

Q ss_pred             ccCchhh---------hhhhhhCCCCC
Q 023670          246 LYRCHTI---------LNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~C---------g~C~~vCP~gi  263 (279)
                      ...|+.|         ..|+.+||.++
T Consensus       188 ~eKC~~C~~Rie~G~~PaCv~aCP~~A  214 (321)
T TIGR03478       188 SEKCIGCYPRIEKGIAPACVKQCPGRI  214 (321)
T ss_pred             hhhCCCchhhhccCCCCHHHhhcCccc
Confidence            4679999         79999999877

This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.

>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein

Probab=94.66  E-value=0.0071  Score=53.47  Aligned_cols=17  Identities=18%  Similarity=0.489  Sum_probs=15.5

Q ss_pred             ccCchhhhhhhhhCCCC
Q 023670          246 LYRCHTILNCARACPKG  262 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~g  262 (279)
                      ...|+.||.|+.+||++
T Consensus       174 ~~~C~gCG~C~~~CP~~  190 (213)
T TIGR00397       174 SAKCTGCGTCEKHCVLS  190 (213)
T ss_pred             cccCCCcchhhHhCCCC
Confidence            46899999999999987

MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.

>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=94.64  E-value=0.007  Score=30.93  Aligned_cols=13  Identities=38%  Similarity=1.255  Sum_probs=12.2

Q ss_pred             CcccCcccCCCCC
Q 023670          192 CILCACCSTSCPS  204 (279)
Q Consensus       192 CI~CG~C~~~CP~  204 (279)
                      |+.|+.|+.+||.
T Consensus         1 C~~C~~C~~~Cp~   13 (15)
T PF12798_consen    1 CTGCGACVEVCPT   13 (15)
T ss_pred             CCCchHHHHHhcC
Confidence            8899999999995

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional

Probab=94.64  E-value=0.0038  Score=53.55  Aligned_cols=19  Identities=32%  Similarity=0.646  Sum_probs=16.0

Q ss_pred             cccccCcccCcccCCCCCc
Q 023670          187 DGMYECILCACCSTSCPSY  205 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~  205 (279)
                      .+..+|+.||.|..+||..
T Consensus        84 i~~~~C~~C~~C~~~CP~~  102 (181)
T PRK10330         84 VMQERCIGCKTCVVACPYG  102 (181)
T ss_pred             eChhhCCCcchhhhhCCcc
Confidence            3567899999999999954

>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit

Probab=94.61  E-value=0.012  Score=54.79  Aligned_cols=54  Identities=24%  Similarity=0.399  Sum_probs=35.6

Q ss_pred             hhcccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670          185 KLDGMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG  262 (279)
Q Consensus       185 ~~~~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g  262 (279)
                      .++....|+.|+  .|+.+||+.....                   +.+..  .   +  ......|+.|+.|+.+||.+
T Consensus       124 ~~y~p~~C~hC~nP~Cv~aCPtgAI~k-------------------~eedG--i---V--~ID~ekCiGCg~Cv~ACPyg  177 (321)
T TIGR03478       124 YFYLPRICNHCTNPACLAACPTGAIYK-------------------REEDG--I---V--LVDQERCKGYRYCVEACPYK  177 (321)
T ss_pred             EEEecccCCCCCCccchhhCCcCcEEE-------------------ecCCC--e---E--EECHHHCcchHHHHHhCCCC
Confidence            345678999999  8999999643110                   00000  0   0  01245799999999999988


Q ss_pred             CC
Q 023670          263 LN  264 (279)
Q Consensus       263 i~  264 (279)
                      +-
T Consensus       178 Ai  179 (321)
T TIGR03478       178 KV  179 (321)
T ss_pred             Cc
Confidence            63

This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.

>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein

Probab=94.49  E-value=0.016  Score=51.52  Aligned_cols=52  Identities=21%  Similarity=0.372  Sum_probs=34.2

Q ss_pred             cccccCcccCc--ccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          187 DGMYECILCAC--CSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       187 ~~~~~CI~CG~--C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      +....|++|+.  |+.+||......                 +..+.    .   +  ......|+.||.|..+||.++.
T Consensus        89 ~~~~~C~~C~~~~Cv~~CP~gAi~~-----------------~~~~g----~---v--~id~~~C~~C~~C~~aCP~~A~  142 (225)
T TIGR03149        89 FFRKSCQHCDNAPCVAVCPTGASFK-----------------DEETG----I---V--DVHKDLCVGCQYCIAACPYRVR  142 (225)
T ss_pred             ECchhccCCcCcChHhhCCCCcEEE-----------------eCCCC----e---E--EechhhCCcchHHHHhCCCCCc
Confidence            34578999996  999999643210                 00000    0   0  1124579999999999999984

Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.

>PRK14993 tetrathionate reductase subunit B; Provisional

Probab=94.46  E-value=0.009  Score=53.92  Aligned_cols=47  Identities=21%  Similarity=0.481  Sum_probs=32.7

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh---------hhhh
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL---------NCAR  257 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg---------~C~~  257 (279)
                      .+..+|+.|+.|+.+||....               .+  ++.             ......|+.|+         .|+.
T Consensus       127 id~~~CigC~~Cv~aCP~~Ai---------------~~--~~~-------------~~~~~KC~~C~~r~~~G~~PaCv~  176 (244)
T PRK14993        127 VDNKRCVGCAYCVQACPYDAR---------------FI--NHE-------------TQTADKCTFCVHRLEAGLLPACVE  176 (244)
T ss_pred             EcHHHCCCHHHHHHhcCCCCC---------------EE--eCC-------------CCCcccCcCCcchhhCCCCcccch
Confidence            456789999999999995321               00  000             11346799998         8999


Q ss_pred             hCCCCC
Q 023670          258 ACPKGL  263 (279)
Q Consensus       258 vCP~gi  263 (279)
                      +||+++
T Consensus       177 ~CP~~A  182 (244)
T PRK14993        177 SCVGGA  182 (244)
T ss_pred             hcccCC
Confidence            999887

>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional

Probab=94.44  E-value=0.011  Score=53.77  Aligned_cols=17  Identities=35%  Similarity=0.993  Sum_probs=15.0

Q ss_pred             cccCcccCcccCCCCCc
Q 023670          189 MYECILCACCSTSCPSY  205 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~  205 (279)
                      ..+||.||.|+.+||..
T Consensus        58 ~~~Ci~Cg~Cv~aCP~~   74 (254)
T PRK09476         58 LSACIRCGLCVQACPYD   74 (254)
T ss_pred             hhhCcCchHHHHhCCcc
Confidence            37899999999999954

>PRK13984 putative oxidoreductase; Provisional

Probab=94.42  E-value=0.011  Score=59.78  Aligned_cols=61  Identities=26%  Similarity=0.449  Sum_probs=34.9

Q ss_pred             hcccccCcccCcccCCCCCcccCC-CcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTS-EAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~-~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +.+..+||.||.|+.+||.....- +.+..+        +. .+...   ..     .......|..|+.|..+||.+.
T Consensus        41 ~~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~--------~~-~g~~~---~~-----~~i~~~~c~~c~~c~~~Cp~~A  102 (604)
T PRK13984         41 INDWEKCIGCGTCSKICPTDAITMVEVPDLP--------QE-YGKKP---QR-----PVIDYGRCSFCALCVDICTTGS  102 (604)
T ss_pred             ccChhhCcCccchhhhCCccceEeecccccc--------cc-ccccc---cc-----cccCcccCcCcchHHhhCCcCc
Confidence            346789999999999999542110 000000        00 00000   00     0113467999999999999863

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=94.39  E-value=0.012  Score=62.84  Aligned_cols=57  Identities=21%  Similarity=0.497  Sum_probs=35.4

Q ss_pred             cccccCccc----CcccCCCCCcccCCCcccCHHHHHHHHHHhhcC-cchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670          187 DGMYECILC----ACCSTSCPSYWWTSEAYLGPAALLHANRWISDS-RDEYTKERLEAIDDEFKLYRCHTILNCARACPK  261 (279)
Q Consensus       187 ~~~~~CI~C----G~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~-r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~  261 (279)
                      .+..+|..|    |.|+.+||... |.          .   ....+ +...  +   .+.   ....|+.||+|..+||.
T Consensus       883 ~~~~rC~~C~~~C~~C~~vCP~~A-~~----------~---i~~~g~~~~~--~---~~~---~~~~C~~CG~C~~~CP~  940 (1019)
T PRK09853        883 QEAARCLECNYVCEKCVDVCPNRA-NV----------S---IAVPGFQNRF--Q---IVH---LDAMCNECGNCAQFCPW  940 (1019)
T ss_pred             ccccccCCcccccchhhhhCCccc-cc----------c---cccCCcccCC--c---eEE---cCccCccccchhhhCCC
Confidence            356799999    99999999643 10          0   00000 0000  0   011   13789999999999998


Q ss_pred             CCCh
Q 023670          262 GLNP  265 (279)
Q Consensus       262 gi~~  265 (279)
                      +..|
T Consensus       941 ~~~p  944 (1019)
T PRK09853        941 NGKP  944 (1019)
T ss_pred             CCCc
Confidence            7754

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.35  E-value=0.015  Score=58.38  Aligned_cols=18  Identities=33%  Similarity=0.733  Sum_probs=16.0

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||.|..+||.++
T Consensus       540 ~~~C~~Cg~C~~~CP~~A  557 (564)
T PRK12771        540 YDKCTGCHICADVCPCGA  557 (564)
T ss_pred             cccCcChhHHHhhcCcCc
Confidence            567999999999999865

>PRK13795 hypothetical protein; Provisional

Probab=94.30  E-value=0.0087  Score=61.11  Aligned_cols=51  Identities=22%  Similarity=0.507  Sum_probs=33.2

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .....|+.||.|..+||.....               . .+...        .+  ......|+.||.|..+||.+.
T Consensus       578 ~~~~~C~~Cg~C~~~CP~~ai~---------------~-~~~~~--------~~--~id~~~C~~Cg~C~~aCP~~a  628 (636)
T PRK13795        578 RRAAECVGCGVCVGACPTGAIR---------------I-EEGKR--------KI--SVDEEKCIHCGKCTEVCPVVK  628 (636)
T ss_pred             EccccCCCHhHHHHhCCcccEE---------------e-ecCCc--------eE--EechhhcCChhHHHhhcCCCe
Confidence            4567899999999999954211               0 00000        01  012357999999999999865

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=94.29  E-value=0.021  Score=51.12  Aligned_cols=44  Identities=27%  Similarity=0.468  Sum_probs=29.2

Q ss_pred             HHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccc
Q 023670           79 VLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLT  122 (279)
Q Consensus        79 vLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t  122 (279)
                      +.++|++.|....=++.-...|..|+||+|+|.++|..+++|..
T Consensus       196 v~~~l~~~Gv~~~~~~e~~m~cg~G~C~~C~~~~~~~~~~~C~~  239 (250)
T PRK00054        196 VVEILKEKKVPAYVSLERRMKCGIGACGACVCDTETGGKRVCKD  239 (250)
T ss_pred             HHHHHHHcCCcEEEEEcccccCcCcccCcCCcccCCCCEEEeCc
Confidence            44555555421111233344699999999999999988899964

>PRK07118 ferredoxin; Validated

Probab=94.20  E-value=0.017  Score=53.21  Aligned_cols=48  Identities=23%  Similarity=0.507  Sum_probs=33.4

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ...||.|+.|+.+||.....               + .+..            .......|+.||.|..+||+++-
T Consensus       212 ~~~Ci~Cg~Cv~~CP~~AI~---------------~-~~~~------------~vId~~~C~~Cg~C~~~CP~~AI  259 (280)
T PRK07118        212 EVGCIGCGKCVKACPAGAIT---------------M-ENNL------------AVIDQEKCTSCGKCVEKCPTKAI  259 (280)
T ss_pred             ccccccchHHHhhCCcCcEE---------------E-eCCc------------EEEcCCcCCCHHHHHHhCCcccc
Confidence            46799999999999954211               0 0000            01235789999999999999864

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.18  E-value=0.0057  Score=62.49  Aligned_cols=21  Identities=19%  Similarity=0.637  Sum_probs=17.9

Q ss_pred             hcccccCcccCcccCCCCCcc
Q 023670          186 LDGMYECILCACCSTSCPSYW  206 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~  206 (279)
                      +.+.++||.|+.|..+|+...
T Consensus         6 ~~d~~~C~gC~~C~~aC~~~~   26 (654)
T PRK12769          6 MANSQQCLGCHACEIACVMAH   26 (654)
T ss_pred             EEChHhCcChhHHHHHhhhhh
Confidence            457789999999999999753

>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit

Probab=94.15  E-value=0.018  Score=48.35  Aligned_cols=19  Identities=26%  Similarity=0.651  Sum_probs=15.9

Q ss_pred             ccCchhhh---------hhhhhCCCCCC
Q 023670          246 LYRCHTIL---------NCARACPKGLN  264 (279)
Q Consensus       246 ~~~C~~Cg---------~C~~vCP~gi~  264 (279)
                      ...|+.|+         .|+.+||.++=
T Consensus       121 ~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai  148 (161)
T TIGR02951       121 MGKCDGCYDRVEKGLRPACVDACPMRAL  148 (161)
T ss_pred             cccCCCCHHHHHCCCCCcchhhccccce
Confidence            45799998         89999998764

This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.

>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional

Probab=94.13  E-value=0.0045  Score=53.09  Aligned_cols=20  Identities=25%  Similarity=0.705  Sum_probs=17.2

Q ss_pred             hcccccCcccCcccCCCCCc
Q 023670          186 LDGMYECILCACCSTSCPSY  205 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~  205 (279)
                      +.+.++|+.|+.|+.+||..
T Consensus         6 ~~d~~~C~gC~~C~~aC~~~   25 (181)
T PRK10330          6 IADASKCIGCRTCEVACVVS   25 (181)
T ss_pred             EeCcccCcCccHHHHHHHHH
Confidence            45678999999999999964

>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B

Probab=94.13  E-value=0.0081  Score=46.70  Aligned_cols=21  Identities=29%  Similarity=0.637  Sum_probs=15.6

Q ss_pred             hhcccccCcccCcccCCCCCc
Q 023670          185 KLDGMYECILCACCSTSCPSY  205 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~~~CP~~  205 (279)
                      .+.+..+||.||.|..+||..
T Consensus        35 V~id~~~CigC~~C~~aCP~~   55 (98)
T PF13247_consen   35 VVIDEDKCIGCGYCVEACPYG   55 (98)
T ss_dssp             EEE-TTTCCTHHHHHHH-TTS
T ss_pred             EEechhhccCchhhhhhhccC
Confidence            345678999999999999954

...

>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing

Probab=94.12  E-value=0.014  Score=53.77  Aligned_cols=52  Identities=19%  Similarity=0.418  Sum_probs=33.7

Q ss_pred             cccccCcccCc--ccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          187 DGMYECILCAC--CSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       187 ~~~~~CI~CG~--C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      +....|++|+.  |+.+||.....              ....++.          +  .+....|+.|+.|+.+||.++.
T Consensus        88 ~~~~~C~hC~~p~Cv~aCP~~gA~--------------~~~~~G~----------V--~id~dkCigC~~Cv~aCP~~a~  141 (283)
T TIGR01582        88 IRKDGCMHCREPGCLKACPAPGAI--------------IQYQNGI----------V--DFDHSKCIGCGYCIVGCPFNIP  141 (283)
T ss_pred             ECCccCCCCCCccccCCCCcCCeE--------------EEcCCCc----------E--EEeHHHCCcchHHHhhCCCCCc
Confidence            34567999998  99999962110              0000000          0  1123569999999999999974

In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.

>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma

Probab=94.08  E-value=0.012  Score=52.51  Aligned_cols=54  Identities=22%  Similarity=0.506  Sum_probs=35.7

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCCh
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNP  265 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~  265 (279)
                      ..+..+|+.|+.|..+||....               ++  + .+     .   .  ......|..|+.|..+||.+.-+
T Consensus       170 ~id~~~C~~C~~C~~aCP~~ai---------------~~--~-~~-----~---~--~i~~~~C~~C~~C~~~CP~~~~~  221 (228)
T TIGR03294       170 VVNQGLCMGCGTCAAACPTRAI---------------EM--E-DG-----R---P--NVNRDRCIKCGACYVQCPRAFWP  221 (228)
T ss_pred             EEChhhCcChhHHHHhCCHhhE---------------EE--e-CC-----c---E--EEChhhccCHHHHHHHcCCCCcc
Confidence            3456789999999999994321               10  0 00     0   0  01235699999999999997755


Q ss_pred             HH
Q 023670          266 GK  267 (279)
Q Consensus       266 ~~  267 (279)
                      .+
T Consensus       222 ~~  223 (228)
T TIGR03294       222 EY  223 (228)
T ss_pred             hh
Confidence            43

This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.

>KOG3309 consensus Ferredoxin [Energy production and conversion]

Probab=94.03  E-value=0.22  Score=41.60  Aligned_cols=52  Identities=27%  Similarity=0.506  Sum_probs=35.7

Q ss_pred             EEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEECC
Q 023670           50 FQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG  114 (279)
Q Consensus        50 ~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~inG  114 (279)
                      |+|+--||+.      ++-.+.... |+||||++.+++.+.++      .|. .-.|-.|.|-|+-
T Consensus        44 i~Itfv~~dG------~~~~i~g~v-GdtlLd~ah~n~idleG------ACEgslACSTCHViv~~   96 (159)
T KOG3309|consen   44 IKITFVDPDG------EEIKIKGKV-GDTLLDAAHENNLDLEG------ACEGSLACSTCHVIVDE   96 (159)
T ss_pred             EEEEEECCCC------CEEEeeeec-chHHHHHHHHcCCCccc------cccccccccceEEEEcH
Confidence            7777778765      333455555 99999999999865443      453 3467778877764

>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit

Probab=94.02  E-value=0.0021  Score=54.07  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=17.8

Q ss_pred             hhcccccCcccCcccCCCCCc
Q 023670          185 KLDGMYECILCACCSTSCPSY  205 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~~~CP~~  205 (279)
                      .+.+.++||.|+.|+.+|+..
T Consensus         4 ~~~d~~~C~gC~~C~~aC~~~   24 (161)
T TIGR02951         4 FYVDQTRCSGCKTCQIACKDK   24 (161)
T ss_pred             EEEEcccCcCchHHHHHHHHH
Confidence            345788999999999999964

This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.

>PRK07118 ferredoxin; Validated

Probab=94.01  E-value=0.011  Score=54.34  Aligned_cols=46  Identities=22%  Similarity=0.543  Sum_probs=31.7

Q ss_pred             ccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          190 YECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       190 ~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +.||.||.|..+||.....               . .++..            ......|+.||.|+.+||.++
T Consensus       139 ~~CigCg~C~~aCp~~AI~---------------~-~~g~~------------~id~~~C~~Cg~Cv~aCP~~a  184 (280)
T PRK07118        139 YGCLGLGSCVAACPFDAIH---------------I-ENGLP------------VVDEDKCTGCGACVKACPRNV  184 (280)
T ss_pred             CCCcChhHHHHhCCccCeE---------------c-cCCeE------------EEChhhCcChhHHHHhcCccc
Confidence            4799999999999954211               0 01110            112467999999999999865

>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=94.00  E-value=0.02  Score=32.21  Aligned_cols=17  Identities=41%  Similarity=0.749  Sum_probs=15.0

Q ss_pred             CccCchhhhhhhhhCCC
Q 023670          245 KLYRCHTILNCARACPK  261 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~  261 (279)
                      ...+|+.|+.|+.+||.
T Consensus         6 D~~rCiGC~~C~~AC~~   22 (22)
T PF12797_consen    6 DLERCIGCGACEVACPV   22 (22)
T ss_pred             ccccccCchhHHHhhCc
Confidence            46789999999999984

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=93.97  E-value=0.019  Score=56.34  Aligned_cols=63  Identities=22%  Similarity=0.412  Sum_probs=35.6

Q ss_pred             ccCcccCcccCCCCCcccCCCcc-cCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          190 YECILCACCSTSCPSYWWTSEAY-LGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       190 ~~CI~CG~C~~~CP~~~~~~~~~-~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ++|+.||.|+.+||...-  ++| .|- ...++   +..+-.    +.+. ..-......|+.||.|..+||.++
T Consensus       224 d~CtgCg~C~~vCPve~~--nefn~Gl-~~~kA---iy~p~~----qaVp-~~~~Id~~~c~~c~~C~~ac~~~a  287 (622)
T COG1148         224 DKCTGCGACSEVCPVEVP--NEFNEGL-GKRKA---IYIPFP----QAVP-LNYNIDPKHCIECGLCEKACPNEA  287 (622)
T ss_pred             ccccccccccccCCcccC--ccccccc-cccee---eeccch----hhcc-cccccChhhhccchhhhhcCCccc
Confidence            799999999999998642  222 110 00111   000110    0000 111235689999999999999543

>PRK10882 hydrogenase 2 protein HybA; Provisional

Probab=93.94  E-value=0.017  Score=54.40  Aligned_cols=52  Identities=23%  Similarity=0.506  Sum_probs=34.3

Q ss_pred             cccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          187 DGMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       187 ~~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      +....|++|+  .|+.+||......                 +....    .   +  ......|+.|+.|..+||.++.
T Consensus       107 ~~~~~C~hC~~p~Cv~aCP~gAi~k-----------------~~~~g----~---V--~id~dkCigCg~Cv~aCP~gai  160 (328)
T PRK10882        107 YIKKQCMHCVDPNCVSVCPVSALTK-----------------DPKTG----I---V--HYDKDVCTGCRYCMVACPFNVP  160 (328)
T ss_pred             cccccCCCcCchhhHhhCCCCCEEe-----------------cccCC----c---c--cCCHHHcCcccHHHHhCCccce
Confidence            3456899998  9999999643210                 00000    0   0  0124579999999999998885

>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional

Probab=93.81  E-value=0.0098  Score=54.00  Aligned_cols=17  Identities=24%  Similarity=0.458  Sum_probs=15.3

Q ss_pred             ccCchhhhhhhhhCCCC
Q 023670          246 LYRCHTILNCARACPKG  262 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~g  262 (279)
                      ...|+.||.|+.+||.+
T Consensus       183 ~d~C~gCG~C~~aCP~~  199 (254)
T PRK09476        183 SDACTGCGKCEKACVLE  199 (254)
T ss_pred             HHHCcCcChhhHhcCCC
Confidence            35799999999999997

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=93.63  E-value=0.13  Score=55.20  Aligned_cols=66  Identities=12%  Similarity=0.039  Sum_probs=46.5

Q ss_pred             EeccCCCchHHHHHHHcccCCC-CCccc-cC-C--CCCCccCeeEEEECCe-----eeccccccccCCCCceEEeeCCCC
Q 023670           70 INLKECGPMVLDALIKIKSEID-PSLTF-RR-S--CREGICGSCAMNIDGC-----NGLACLTKISPSGSASTITPLPHM  139 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~d-ptl~~-~~-~--c~~g~CG~C~v~inG~-----~~lAC~t~v~~g~~~~~iepl~~~  139 (279)
                      ++..+ |.||.-||..+|...- -++-+ ++ +  |..|.|--|.|+|||.     ++.||.|++.+|   ++|+....+
T Consensus        22 ~~~~~-g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~~~~~~ac~~~~~~g---m~~~~~~~~   97 (985)
T TIGR01372        22 YSGFA-GDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQREPNTRATTQELYDG---LVATSQNRW   97 (985)
T ss_pred             eecCC-CCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcCCCCCccceeEEcccC---CEEecccCC
Confidence            45557 9999999999884321 12212 11 2  8878899999999973     578999999987   555554444

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=93.58  E-value=0.022  Score=60.87  Aligned_cols=17  Identities=35%  Similarity=0.647  Sum_probs=15.2

Q ss_pred             CchhhhhhhhhCCCCCC
Q 023670          248 RCHTILNCARACPKGLN  264 (279)
Q Consensus       248 ~C~~Cg~C~~vCP~gi~  264 (279)
                      .|+.||.|+.+||.+.-
T Consensus       922 ~C~~CG~C~~vCP~~a~  938 (1012)
T TIGR03315       922 MCNECGNCATFCPYDGA  938 (1012)
T ss_pred             cccccchHHHhCCCCcc
Confidence            59999999999999764

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR02486 RDH reductive dehalogenase

Probab=93.25  E-value=0.028  Score=52.58  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             hhhhhhhhCCCCCChHHHHHHHHHHHH
Q 023670          251 TILNCARACPKGLNPGKQIINIKQLQL  277 (279)
Q Consensus       251 ~Cg~C~~vCP~gi~~~~~I~~lR~~~~  277 (279)
                      .||.|..+||.+.+....|+++=+.++
T Consensus       268 ~C~~C~~~CPf~~~~~s~iH~vvk~tv  294 (314)
T TIGR02486       268 GCGVCQAVCPFNKKPNSWIHDVVRSTV  294 (314)
T ss_pred             CCCCCeeECCCCCCCcchHHHHHHHHh
Confidence            599999999999777777776655443

This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.

>TIGR01660 narH nitrate reductase, beta subunit

Probab=93.17  E-value=0.026  Score=55.03  Aligned_cols=48  Identities=17%  Similarity=0.311  Sum_probs=33.4

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh---------hhhh
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL---------NCAR  257 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg---------~C~~  257 (279)
                      .+..+|+.|+.|+.+||....               .+  +..             ......|..|.         .|++
T Consensus       211 ID~dkCiGCg~CV~ACPygAI---------------~~--n~~-------------~g~~~KCd~C~~Rie~G~pPaCVe  260 (492)
T TIGR01660       211 IDQDKCRGWRMCISGCPYKKI---------------YF--NWK-------------TGKSEKCIFCYPRIEAGQPTVCSE  260 (492)
T ss_pred             EehhhccChHHHHHhCCCCCc---------------Ee--cCC-------------CCccccCCCChhHHhCCCCCcchh
Confidence            456899999999999995321               00  000             01246788885         6999


Q ss_pred             hCCCCCC
Q 023670          258 ACPKGLN  264 (279)
Q Consensus       258 vCP~gi~  264 (279)
                      +||.++-
T Consensus       261 aCP~~Ar  267 (492)
T TIGR01660       261 TCVGRIR  267 (492)
T ss_pred             hcChhhh
Confidence            9999983

The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.

>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J

Probab=93.06  E-value=0.043  Score=37.24  Aligned_cols=17  Identities=35%  Similarity=0.845  Sum_probs=12.7

Q ss_pred             CchhhhhhhhhCCCCCC
Q 023670          248 RCHTILNCARACPKGLN  264 (279)
Q Consensus       248 ~C~~Cg~C~~vCP~gi~  264 (279)
                      +|+.||.|+.+||.++-
T Consensus         1 kCi~Cg~C~~~CP~~~~   17 (55)
T PF13187_consen    1 KCIGCGRCVEACPVGVI   17 (55)
T ss_dssp             C--TTTHHHHHSTTT-E
T ss_pred             CCCCcchHHHHCCccCe
Confidence            59999999999999874

>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]

Probab=92.96  E-value=0.037  Score=47.58  Aligned_cols=51  Identities=24%  Similarity=0.460  Sum_probs=33.9

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +.+-+.||.|-.|..+||+-..           +-+       .+     .+..+    ....|+.|+.|+..||++.
T Consensus       111 ~i~e~~ciGCtkCiqaCpvdAi-----------vg~-------~~-----~mhtv----~~dlCTGC~lCva~CPtdc  161 (198)
T COG2878         111 LIDEANCIGCTKCIQACPVDAI-----------VGA-------TK-----AMHTV----IADLCTGCDLCVAPCPTDC  161 (198)
T ss_pred             EecchhccccHHHHHhCChhhh-----------hcc-------ch-----hHHHH----HHHHhcCCCcccCCCCCCc
Confidence            3456789999999999996431           111       11     01111    1235999999999999986

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=92.89  E-value=0.04  Score=54.19  Aligned_cols=45  Identities=31%  Similarity=0.665  Sum_probs=32.4

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +...|+.||.|.. ||.....                 .+ +        .    ....-.|..||-|+.+||.|+
T Consensus       559 de~~C~gC~~C~~-Cpf~ais-----------------~~-k--------a----~v~~~~C~gCG~C~~aCp~ga  603 (622)
T COG1148         559 DEDKCTGCGICAE-CPFGAIS-----------------VD-K--------A----EVNPLRCKGCGICSAACPSGA  603 (622)
T ss_pred             chhhhcCCcceee-CCCCcee-----------------cc-c--------c----ccChhhhCcccchhhhCCccc
Confidence            4567999999999 9954211                 01 1        0    113567999999999999987

>COG3894 Uncharacterized metal-binding protein [General function prediction only]

Probab=92.83  E-value=0.1  Score=51.43  Aligned_cols=46  Identities=33%  Similarity=0.726  Sum_probs=35.4

Q ss_pred             cCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC-C-----------------eeecccccccc
Q 023670           73 KECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID-G-----------------CNGLACLTKIS  125 (279)
Q Consensus        73 ~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in-G-----------------~~~lAC~t~v~  125 (279)
                      ++ |+|||||++++|. +     .+.-|. .|.||-|.|.|- |                 ...|||++++.
T Consensus        15 ~~-g~~il~aar~~gv-~-----i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~v~   79 (614)
T COG3894          15 DE-GTTILDAARRLGV-Y-----IRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQVL   79 (614)
T ss_pred             CC-CchHHHHHHhhCc-e-----EeeecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehhhc
Confidence            45 8999999999994 3     344475 599999999873 3                 13589999998

>cd07030 RNAP_D D subunit of Archaeal RNA polymerase

Probab=92.74  E-value=0.036  Score=50.27  Aligned_cols=46  Identities=26%  Similarity=0.543  Sum_probs=30.7

Q ss_pred             ccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670          190 YECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG  262 (279)
Q Consensus       190 ~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g  262 (279)
                      .+|+.|+.|..+||.....                 .+...      .  .  ......|+.|+.|..+||.+
T Consensus       169 ~~C~~C~~C~~~CP~~vi~-----------------~d~~~------~--~--v~~~~~C~~C~~C~~~Cp~~  214 (259)
T cd07030         169 EDCDGCGKCVEECPRGVLE-----------------LEEGK------V--V--VEDLEDCSLCKLCERACDAG  214 (259)
T ss_pred             hhCCChHHHHHhCCccceE-----------------ccCCe------e--E--EeChhhCcCchHHHHhCCCC
Confidence            6899999999999964311                 01000      0  0  01235799999999999954

The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w

>PRK09898 hypothetical protein; Provisional

Probab=92.58  E-value=0.054  Score=47.55  Aligned_cols=51  Identities=25%  Similarity=0.462  Sum_probs=33.8

Q ss_pred             ccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          188 GMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       188 ~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ....|++|+  .|+.+||......                 +....    .   +  ......|+.|+.|..+||.++.
T Consensus       119 ~~~~C~~C~~~~C~~~CP~gAi~~-----------------~~~~g----~---v--~vd~~~CigC~~C~~aCP~~ai  171 (208)
T PRK09898        119 TADTCRQCKEPQCMNVCPIGAITW-----------------QQKEG----C---I--TVDHKRCIGCSACTTACPWMMA  171 (208)
T ss_pred             eCccCCCccCcchhhhCCcceEEe-----------------eccCC----e---E--EeccccCCCcCcccccCCCCCC
Confidence            456899998  9999999543110                 00000    0   1  1134679999999999999874

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.43  E-value=0.013  Score=59.83  Aligned_cols=21  Identities=29%  Similarity=0.626  Sum_probs=17.8

Q ss_pred             hhcccccCcccCcccCCCCCc
Q 023670          185 KLDGMYECILCACCSTSCPSY  205 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~~~CP~~  205 (279)
                      .+.+.++||.|+.|..+|+..
T Consensus         5 ~~~d~~~C~gC~~C~~aC~~~   25 (639)
T PRK12809          5 IAAEAAECIGCHACEIACAVA   25 (639)
T ss_pred             EEEChhhCcChhHHHHHhhhh
Confidence            345678999999999999975

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=92.35  E-value=0.82  Score=32.98  Aligned_cols=45  Identities=22%  Similarity=0.242  Sum_probs=32.4

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPS  127 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g  127 (279)
                      ...++++++ ++|+.|.|.+++.  .+             ...+|.+||..+.. .+.+.+|
T Consensus        14 ~~~~~~~~~-~~tv~~ll~~l~~--~~-------------~~v~v~vNg~iv~~-~~~l~~g   58 (70)
T PRK08364         14 IEKEIEWRK-GMKVADILRAVGF--NT-------------ESAIAKVNGKVALE-DDPVKDG   58 (70)
T ss_pred             cceEEEcCC-CCcHHHHHHHcCC--CC-------------ccEEEEECCEECCC-CcCcCCC
Confidence            445667777 8999999999863  21             13899999998854 5666665

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.34  E-value=0.042  Score=56.22  Aligned_cols=55  Identities=18%  Similarity=0.449  Sum_probs=34.5

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh------hhhhhC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL------NCARAC  259 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg------~C~~vC  259 (279)
                      ..+..+|+.|+.|+.+||.....               +.......   ..   +  ......|..|+      .|+.+|
T Consensus        81 ~id~~~C~~C~~C~~~CP~~ai~---------------~~~~~~~~---~~---~--~~~~~~C~~C~~~~~~p~Cv~~C  137 (654)
T PRK12769         81 QVNQQKCIGCKSCVVACPFGTMQ---------------IVLTPVAA---GK---V--KATAHKCDLCAGRENGPACVENC  137 (654)
T ss_pred             EEecccccCcChhcccCCccCee---------------ecccCCcc---cc---e--eeecCcCcCCCCCCCCCceeccC
Confidence            34568999999999999954211               00000000   00   0  11346799998      999999


Q ss_pred             CCCC
Q 023670          260 PKGL  263 (279)
Q Consensus       260 P~gi  263 (279)
                      |.++
T Consensus       138 P~~A  141 (654)
T PRK12769        138 PADA  141 (654)
T ss_pred             CcCc
Confidence            9876

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]

Probab=92.32  E-value=0.029  Score=56.40  Aligned_cols=51  Identities=25%  Similarity=0.442  Sum_probs=34.8

Q ss_pred             hhcccccCcccCccc--CCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670          185 KLDGMYECILCACCS--TSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG  262 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~--~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g  262 (279)
                      ..-+..+|..|+.|.  ..||.....+                   ..  ++.+   +    ....|..||.|+++||..
T Consensus       572 ~~Vd~~~CtGC~~C~~~~~Cpsi~~~~-------------------~~--~k~~---i----d~~~C~GCg~C~~iCP~~  623 (640)
T COG4231         572 YFVDEEKCTGCGDCIVLSGCPSIEPDP-------------------TF--KKAR---I----DPSSCNGCGSCVEVCPSF  623 (640)
T ss_pred             ceechhhcCCcHHHHhhcCCceEeecC-------------------CC--Ccee---e----cccccccchhhhhcCchh
Confidence            344678999999998  7899764311                   00  0011   1    235599999999999976


Q ss_pred             C
Q 023670          263 L  263 (279)
Q Consensus       263 i  263 (279)
                      +
T Consensus       624 a  624 (640)
T COG4231         624 A  624 (640)
T ss_pred             h
Confidence            5

>PF13746 Fer4_18: 4Fe-4S dicluster domain

Probab=92.26  E-value=0.056  Score=39.16  Aligned_cols=19  Identities=32%  Similarity=0.807  Sum_probs=16.8

Q ss_pred             cccccCcccCcccCCCCCc
Q 023670          187 DGMYECILCACCSTSCPSY  205 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~  205 (279)
                      .....|+.||+|+.+||+.
T Consensus        47 ~~~~~CVgCgrCv~~CP~~   65 (69)
T PF13746_consen   47 YGEGDCVGCGRCVRVCPAG   65 (69)
T ss_pred             cCCccCCCcChHhhhcCCC
Confidence            4677899999999999975

>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]

Probab=92.14  E-value=0.022  Score=52.95  Aligned_cols=50  Identities=26%  Similarity=0.527  Sum_probs=34.1

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      .+...|..||.|+.+||+...               .+.  +.         .+  ......|+.||.|..+||..+.
T Consensus       169 ~~~E~c~gc~~cv~~C~~gAI---------------~~~--~~---------~l--~id~~~Ci~Cg~Ci~~Cp~~~~  218 (317)
T COG2221         169 VDEELCRGCGKCVKVCPTGAI---------------TWD--GK---------KL--KIDGSKCIGCGKCIRACPKAAF  218 (317)
T ss_pred             cCHHHhchhHhHHHhCCCCce---------------eec--cc---------eE--EEehhhccCccHHhhhCChhhc
Confidence            345679999999999997532               111  10         01  1135789999999999995443

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=91.89  E-value=0.11  Score=53.20  Aligned_cols=30  Identities=23%  Similarity=0.342  Sum_probs=26.6

Q ss_pred             CccCchhhh---hhhhhCCCCCChHHHHHHHHH
Q 023670          245 KLYRCHTIL---NCARACPKGLNPGKQIINIKQ  274 (279)
Q Consensus       245 ~~~~C~~Cg---~C~~vCP~gi~~~~~I~~lR~  274 (279)
                      ...+|..||   .|...||.|+++.+.|..+++
T Consensus       206 ea~rC~~C~~~~~C~~~CP~~~~i~~~~~~~~~  238 (639)
T PRK12809        206 ESDRCVYCAEKANCNWHCPLHNAIPDYIRLVQE  238 (639)
T ss_pred             HHHHHhCCCCCCcccccCCCCCcHHHHHHHHHC
Confidence            357999998   799999999999999988874

>PRK00783 DNA-directed RNA polymerase subunit D; Provisional

Probab=91.79  E-value=0.052  Score=49.34  Aligned_cols=47  Identities=28%  Similarity=0.623  Sum_probs=31.2

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG  262 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g  262 (279)
                      ..+|+.|+.|..+||.....               +  +. +.     . .+.   ....|+.|+.|..+||.+
T Consensus       168 ~~~C~~C~~C~~~CP~~vi~---------------~--~~-~~-----~-~v~---~~~~C~~C~~Ci~~CP~~  214 (263)
T PRK00783        168 SEDCDECEKCVEACPRGVLE---------------L--KE-GK-----L-VVT---DLLNCSLCKLCERACPGK  214 (263)
T ss_pred             cccCCchHHHHHhCCccccE---------------e--cC-Ce-----E-EEe---ChhhCCCchHHHHhCCCC
Confidence            57899999999999954210               0  10 00     0 011   234699999999999965

>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit

Probab=91.68  E-value=0.058  Score=51.07  Aligned_cols=49  Identities=20%  Similarity=0.340  Sum_probs=31.1

Q ss_pred             cCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       191 ~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .|..||.|+.+||+..+.               +..+..+    .++     ......|+.||.|..+||.+.
T Consensus       182 ~~c~~~~Cv~~CP~~Ai~---------------~~~~~~~----~~~-----~id~~~Ci~Cg~Ci~~CP~~a  230 (341)
T TIGR02066       182 NVCEIPSVVAACPTGALK---------------PRRDGKN----KSL-----EVDVEKCIYCGNCYTMCPAMP  230 (341)
T ss_pred             hhcCCCceEeeCchhhce---------------ecccCCC----Cce-----eeccccCCcCCchHHhCchhh
Confidence            477889999999964211               1001000    011     124578999999999999854

This model describes the beta subunit of sulfite reductase.

>PRK01777 hypothetical protein; Validated

Probab=91.60  E-value=1.7  Score=33.50  Aligned_cols=71  Identities=11%  Similarity=0.052  Sum_probs=45.0

Q ss_pred             eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCC-CCccccCCCCCCccCeeEEEECCeeecccccccc
Q 023670           47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEID-PSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS  125 (279)
Q Consensus        47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~d-ptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~  125 (279)
                      ++++.|.---|+.     ++..++++++ |+|+-||+...|.... |.+....         ..|-|||+.+.. .+.+.
T Consensus         3 ~i~v~V~ya~~~~-----~~~~~l~vp~-GtTv~dal~~sgi~~~~pei~~~~---------~~vgI~Gk~v~~-d~~L~   66 (95)
T PRK01777          3 KIRVEVVYALPER-----QYLQRLTLQE-GATVEEAIRASGLLELRTDIDLAK---------NKVGIYSRPAKL-TDVLR   66 (95)
T ss_pred             eeEEEEEEECCCc-----eEEEEEEcCC-CCcHHHHHHHcCCCccCccccccc---------ceEEEeCeECCC-CCcCC
Confidence            5667766555533     5668888888 9999999999985221 2222111         478899997743 55666


Q ss_pred             CCCCceEEe
Q 023670          126 PSGSASTIT  134 (279)
Q Consensus       126 ~g~~~~~ie  134 (279)
                      +| +.+.|.
T Consensus        67 dG-DRVeIy   74 (95)
T PRK01777         67 DG-DRVEIY   74 (95)
T ss_pred             CC-CEEEEe
Confidence            65 444443

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=91.52  E-value=0.12  Score=50.60  Aligned_cols=30  Identities=17%  Similarity=0.113  Sum_probs=27.1

Q ss_pred             CccCchhhhhhhhhCCCCCChHHHHHHHHH
Q 023670          245 KLYRCHTILNCARACPKGLNPGKQIINIKQ  274 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~  274 (279)
                      ....|+.||.|+++||.++.|..+++.++.
T Consensus       372 ~~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~  401 (448)
T PRK05352        372 SERAMVPIGNYERVMPLDILPTQLLRALIV  401 (448)
T ss_pred             CCcceeecCcHhhcCCCCCCHHHHHHHHHc
Confidence            457999999999999999999999988874

>PRK14993 tetrathionate reductase subunit B; Provisional

Probab=91.43  E-value=0.058  Score=48.68  Aligned_cols=50  Identities=24%  Similarity=0.410  Sum_probs=33.1

Q ss_pred             ccccCcccCc--ccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          188 GMYECILCAC--CSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       188 ~~~~CI~CG~--C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ....|++|+.  |+.+||.....              + ..++.          +  ......|+.|+.|..+||.++-
T Consensus        96 ~~~~C~~C~~p~Cv~~CP~~Ai~--------------~-~~~G~----------v--~id~~~CigC~~Cv~aCP~~Ai  147 (244)
T PRK14993         96 LPRLCNHCDNPPCVPVCPVQATF--------------Q-REDGI----------V--VVDNKRCVGCAYCVQACPYDAR  147 (244)
T ss_pred             cchhcCCcCCccCccccCCCCEE--------------E-CCCCC----------E--EEcHHHCCCHHHHHHhcCCCCC
Confidence            3568999996  99999954210              0 00000          0  1123569999999999999874

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=91.03  E-value=0.15  Score=50.03  Aligned_cols=30  Identities=13%  Similarity=0.026  Sum_probs=26.9

Q ss_pred             CccCchhhhhhhhhCCCCCChHHHHHHHHH
Q 023670          245 KLYRCHTILNCARACPKGLNPGKQIINIKQ  274 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~  274 (279)
                      ....|+.||.|+++||.++.|..+++.++.
T Consensus       371 ~~~aCI~CG~C~~vCPm~L~P~~L~~a~~~  400 (447)
T TIGR01936       371 GERAMIPIGIYERVMPLDIPPTLLLKALIA  400 (447)
T ss_pred             CccceeECChHhhcCCCCCCHHHHHHHHHc
Confidence            457899999999999999999999988774

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional

Probab=90.97  E-value=0.28  Score=41.97  Aligned_cols=19  Identities=11%  Similarity=0.108  Sum_probs=16.1

Q ss_pred             CccCchhhhhhhhhCCCCC
Q 023670          245 KLYRCHTILNCARACPKGL  263 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .++.|-.|..|..+||.+.
T Consensus       151 ~~~~C~~Cr~~~~~~~~~~  169 (180)
T PRK12387        151 SFETCPECKRQKCLVPSDR  169 (180)
T ss_pred             HHhhCHHHhcccccccccc
Confidence            3578999999999999765

>PF13484 Fer4_16: 4Fe-4S double cluster binding domain

Probab=90.94  E-value=0.066  Score=37.92  Aligned_cols=16  Identities=50%  Similarity=0.941  Sum_probs=14.5

Q ss_pred             CchhhhhhhhhCCCCC
Q 023670          248 RCHTILNCARACPKGL  263 (279)
Q Consensus       248 ~C~~Cg~C~~vCP~gi  263 (279)
                      .|..||.|+++||.++
T Consensus         1 ~C~~C~~C~~~CP~~A   16 (67)
T PF13484_consen    1 FCITCGKCAEACPTGA   16 (67)
T ss_pred             CCcchhHHHHhCcHhh
Confidence            4899999999999876

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=90.90  E-value=0.2  Score=44.85  Aligned_cols=44  Identities=23%  Similarity=0.363  Sum_probs=27.6

Q ss_pred             HHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccc
Q 023670           79 VLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLT  122 (279)
Q Consensus        79 vLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t  122 (279)
                      +.++|++.|...-=++--+..|..|+||+|+|+..|...+.|+.
T Consensus       195 ~~~~l~~~Gv~~~~s~e~~m~Cg~G~C~~C~~~~~~~~~~~C~~  238 (248)
T cd06219         195 VSELTRPYGIPTVVSLNPIMVDGTGMCGACRVTVGGETKFACVD  238 (248)
T ss_pred             HHHHHHHcCCCEEEEecccccCccceeeeEEEEeCCCEEEEeCc
Confidence            34555554432111222344699999999999998855678864

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A

Probab=90.86  E-value=0.048  Score=36.70  Aligned_cols=16  Identities=38%  Similarity=0.989  Sum_probs=11.2

Q ss_pred             ccccCcccCcccCCCC
Q 023670          188 GMYECILCACCSTSCP  203 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP  203 (279)
                      +..+||.||.|+.+||
T Consensus        37 ~~~~C~~Cg~C~~~CP   52 (52)
T PF13237_consen   37 DPERCIGCGACVEVCP   52 (52)
T ss_dssp             -TTT--TTSHHHHH-T
T ss_pred             CcccccccChhhhhCc
Confidence            6788999999999998

>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]

Probab=90.78  E-value=0.086  Score=45.14  Aligned_cols=21  Identities=29%  Similarity=0.722  Sum_probs=18.0

Q ss_pred             cccccCcccCcccCCCCCccc
Q 023670          187 DGMYECILCACCSTSCPSYWW  207 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~  207 (279)
                      .++.+||-||.|+.+||+...
T Consensus        92 In~grCIfCg~C~e~CPt~Al  112 (172)
T COG1143          92 INLGRCIFCGLCVEVCPTGAL  112 (172)
T ss_pred             eccccccccCchhhhCchhhh
Confidence            367899999999999998653

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=90.53  E-value=0.2  Score=44.39  Aligned_cols=30  Identities=27%  Similarity=0.520  Sum_probs=24.8

Q ss_pred             CccccCCCCCCccCeeEEEECCeeeccccc
Q 023670           93 SLTFRRSCREGICGSCAMNIDGCNGLACLT  122 (279)
Q Consensus        93 tl~~~~~c~~g~CG~C~v~inG~~~lAC~t  122 (279)
                      ++..+..|..|+||+|.|..+|...++|..
T Consensus       209 s~~~~m~Cg~G~C~~C~~~~~~~~~~~C~~  238 (243)
T cd06192         209 SNNSPMCCGIGICGACTIETKHGVKRLCKD  238 (243)
T ss_pred             ECCccccCccccccceEEEeCCCeEEEeCC
Confidence            344556799999999999999888889975

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG

Probab=90.42  E-value=0.098  Score=51.08  Aligned_cols=20  Identities=30%  Similarity=0.722  Sum_probs=17.8

Q ss_pred             ccCchhhhhhhhhCCCCCCh
Q 023670          246 LYRCHTILNCARACPKGLNP  265 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi~~  265 (279)
                      ...|+.|+.|+.+||.|++.
T Consensus       230 ~~~Ci~C~~Cv~vCP~gi~~  249 (434)
T TIGR02745       230 LGDCIDCNLCVQVCPTGIDI  249 (434)
T ss_pred             CCCCCChhhhHHhCCCCCEe
Confidence            57899999999999999854

Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.

>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B

Probab=90.35  E-value=0.067  Score=41.57  Aligned_cols=51  Identities=25%  Similarity=0.481  Sum_probs=28.6

Q ss_pred             ccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          188 GMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       188 ~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ....|.+|.  .|+.+||+.....                 +..+.    .   +  ......|+.|+.|..+||.|+.
T Consensus         5 ~~~~C~hC~~ppC~~~CP~~Ai~~-----------------~~~~G----~---V--~id~~~CigC~~C~~aCP~~ai   57 (98)
T PF13247_consen    5 VPVQCRHCEDPPCVEACPTGAIYK-----------------DPEDG----I---V--VIDEDKCIGCGYCVEACPYGAI   57 (98)
T ss_dssp             EEEC---BSS-HHHHHCTTTSEEE-----------------ETTTS--------E--EE-TTTCCTHHHHHHH-TTS-E
T ss_pred             eCCcCcCcCCCchhhhCCccceEE-----------------EcCCC----e---E--EechhhccCchhhhhhhccCcc
Confidence            356799997  9999999753210                 11000    0   1  1235679999999999998874

...

>PRK05802 hypothetical protein; Provisional

Probab=90.23  E-value=0.23  Score=46.51  Aligned_cols=33  Identities=30%  Similarity=0.726  Sum_probs=26.9

Q ss_pred             CccccCCCCCCccCeeEEEECCee-ecccccccc
Q 023670           93 SLTFRRSCREGICGSCAMNIDGCN-GLACLTKIS  125 (279)
Q Consensus        93 tl~~~~~c~~g~CG~C~v~inG~~-~lAC~t~v~  125 (279)
                      +|..+..|..|+||+|+|..+|.. .+.|+.++.
T Consensus       285 Sle~~M~CG~G~Cg~C~v~~~g~~~~r~Ck~q~~  318 (320)
T PRK05802        285 SNNAKMCCGEGICGACTVRYGGHKVKRLCKVQVD  318 (320)
T ss_pred             eCCCeeeCcCccCCeeEEEECCEEEEEEeeeecC
Confidence            355566799999999999999854 588998875

>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]

Probab=89.87  E-value=0.1  Score=44.18  Aligned_cols=20  Identities=35%  Similarity=0.850  Sum_probs=17.8

Q ss_pred             cccccCcccCcccCCCCCcc
Q 023670          187 DGMYECILCACCSTSCPSYW  206 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~  206 (279)
                      .|+.+||-||.|..+||+..
T Consensus       147 IDmtkCIyCG~CqEaCPvda  166 (212)
T KOG3256|consen  147 IDMTKCIYCGFCQEACPVDA  166 (212)
T ss_pred             ccceeeeeecchhhhCCccc
Confidence            47899999999999999864

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=89.84  E-value=0.068  Score=54.75  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=21.1

Q ss_pred             hhhcccccCcccCcccCCCCCcccC
Q 023670          184 AKLDGMYECILCACCSTSCPSYWWT  208 (279)
Q Consensus       184 ~~~~~~~~CI~CG~C~~~CP~~~~~  208 (279)
                      .+..|.++||+||+|+++|...+.+
T Consensus       610 ~i~~D~~kCI~CgrCv~~C~ev~~~  634 (652)
T PRK12814        610 DIRFEREKCVDCGICVRTLEEYGAE  634 (652)
T ss_pred             CeEeccccccCchHHHHHHHHhccc
Confidence            4567899999999999999987643

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]

Probab=89.82  E-value=0.13  Score=52.91  Aligned_cols=27  Identities=30%  Similarity=0.721  Sum_probs=20.2

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLG  214 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~g  214 (279)
                      ..+.|+.||.|+.+||+.......++|
T Consensus       190 ~~SSCVsCG~CvtVCP~nALmek~m~g  216 (978)
T COG3383         190 NESSCVSCGACVTVCPVNALMEKSMLG  216 (978)
T ss_pred             ccccccccCccceecchhhhhhhhhhc
Confidence            357899999999999987654434444

>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=89.67  E-value=0.17  Score=35.47  Aligned_cols=16  Identities=38%  Similarity=0.943  Sum_probs=11.2

Q ss_pred             cccCcccCcccCCCCC
Q 023670          189 MYECILCACCSTSCPS  204 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~  204 (279)
                      .+.|+.||.|+.+||+
T Consensus        38 ~~~C~GCg~C~~~CPv   53 (59)
T PF14697_consen   38 PDKCIGCGLCVKVCPV   53 (59)
T ss_dssp             -TT--S-SCCCCCSSS
T ss_pred             cccCcCcCcccccCCC
Confidence            5789999999999996

...

>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=89.35  E-value=0.078  Score=35.72  Aligned_cols=16  Identities=38%  Similarity=0.918  Sum_probs=10.2

Q ss_pred             CchhhhhhhhhCCCCC
Q 023670          248 RCHTILNCARACPKGL  263 (279)
Q Consensus       248 ~C~~Cg~C~~vCP~gi  263 (279)
                      +|+.||.|+.+||.++
T Consensus         1 ~C~~C~~C~~~CP~~~   16 (52)
T PF12838_consen    1 KCIGCGACVEACPTGA   16 (52)
T ss_dssp             C-SS--HHHHH-TTHH
T ss_pred             CCCCcCchHHhcCccc
Confidence            5999999999999764

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.

>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]

Probab=89.12  E-value=0.23  Score=43.62  Aligned_cols=53  Identities=25%  Similarity=0.412  Sum_probs=35.3

Q ss_pred             hcccccCccc--CcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILC--ACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~C--G~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ++-...|.+|  --|+.+||+....              +   +..+.        +. ......|+.||.|..+||.|+
T Consensus        63 ~~~~~~C~HC~~ppCv~vCPtgA~~--------------k---~~~dG--------iV-~vd~d~CIGC~yCi~ACPyga  116 (203)
T COG0437          63 YYLSISCMHCEDPPCVKVCPTGALF--------------K---REEDG--------IV-LVDKDLCIGCGYCIAACPYGA  116 (203)
T ss_pred             EEecccccCCCCCcccccCCCcceE--------------E---ecCCC--------EE-EecCCcccCchHHHhhCCCCC
Confidence            3445679999  6799999975311              0   00010        10 123578999999999999999


Q ss_pred             C
Q 023670          264 N  264 (279)
Q Consensus       264 ~  264 (279)
                      .
T Consensus       117 ~  117 (203)
T COG0437         117 P  117 (203)
T ss_pred             c
Confidence            5

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=88.96  E-value=0.3  Score=43.65  Aligned_cols=42  Identities=17%  Similarity=0.370  Sum_probs=30.5

Q ss_pred             HHHHHHHcccCCCCCccccC--CCCCCccCeeEEEEC---Ceeeccccc
Q 023670           79 VLDALIKIKSEIDPSLTFRR--SCREGICGSCAMNID---GCNGLACLT  122 (279)
Q Consensus        79 vLdal~~~~~~~dptl~~~~--~c~~g~CG~C~v~in---G~~~lAC~t  122 (279)
                      +.++|++.|.  +..++...  -|.+|+||.|.+...   |.+.++|+.
T Consensus       195 ~~~~L~~~Gv--~~~~~~~~~~~~~~g~c~~c~~~~~~~~~~~~~~c~~  241 (246)
T cd06218         195 VAELAAERGV--PCQVSLEERMACGIGACLGCVVKTKDDEGGYKRVCKD  241 (246)
T ss_pred             HHHHHHhcCC--CEEEEecccccCccceecccEEEeecCCCccEEEeCc
Confidence            4455665553  34455444  399999999999997   999999974

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=88.83  E-value=0.67  Score=42.92  Aligned_cols=65  Identities=23%  Similarity=0.481  Sum_probs=44.0

Q ss_pred             CceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC--C-------
Q 023670           45 TDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID--G-------  114 (279)
Q Consensus        45 ~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in--G-------  114 (279)
                      ...++++|-- ||+       ++  ..++. |.++|.+|...|+ .+|     ..|. .|.||-|-|.|.  |       
T Consensus        34 ~gd~ti~IN~-d~e-------~~--~t~~a-G~kLL~~L~~~gi-fi~-----SaCGGggsC~QCkv~v~~ggge~LpTe   96 (410)
T COG2871          34 VGDITIKING-DPE-------KT--KTVPA-GGKLLGALASSGI-FIS-----SACGGGGSCGQCKVRVKKGGGEILPTE   96 (410)
T ss_pred             cCceEEEeCC-Chh-------hc--eecCC-chhHHHHHHhCCc-ccc-----cCCCCCccccccEEEEecCCCccCcch
Confidence            3457788832 222       23  45556 8999999999884 333     3375 489999999973  2       


Q ss_pred             -----------eeeccccccccC
Q 023670          115 -----------CNGLACLTKISP  126 (279)
Q Consensus       115 -----------~~~lAC~t~v~~  126 (279)
                                 ..+|||++.|+.
T Consensus        97 ~sh~skrea~eG~RLsCQ~~Vk~  119 (410)
T COG2871          97 LSHISKREAKEGWRLSCQVNVKH  119 (410)
T ss_pred             hhhhhhhhhhccceEEEEecccc
Confidence                       135899999984

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=88.66  E-value=0.36  Score=44.13  Aligned_cols=43  Identities=23%  Similarity=0.387  Sum_probs=30.3

Q ss_pred             HHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccc
Q 023670           79 VLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL  121 (279)
Q Consensus        79 vLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~  121 (279)
                      +.++|++.|....-+|..+-.|..|+||.|+|...|...+.|.
T Consensus       196 v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~~~~~~~~C~  238 (281)
T PRK06222        196 VAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTVGGETKFACV  238 (281)
T ss_pred             HHHHHHhcCCCEEEECcccccCcccccceeEEEECCCEEEEeC
Confidence            4455555553222356667789999999999999885567886

>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]

Probab=88.37  E-value=0.4  Score=45.28  Aligned_cols=65  Identities=18%  Similarity=0.324  Sum_probs=35.5

Q ss_pred             ccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670          190 YECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG  262 (279)
Q Consensus       190 ~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g  262 (279)
                      +.|-.|..|..+||+.........-+.--+. +.....+..  ..+....+  ...++   .|+-|..+||.+
T Consensus       185 ~~Cg~C~~CldaCPt~Al~~~~~~~~~~cis-~lt~~~~~~--p~e~r~~~--~n~iy---gCd~C~~vCPwn  249 (337)
T COG1600         185 DHCGSCTRCLDACPTGALVAPYTVDARRCIS-YLTIEKGGA--PEEFRPLI--GNRIY---GCDICQKVCPWN  249 (337)
T ss_pred             ccChhhHHHHhhCCcccccCCCccchhHHhh-hhhhhccCC--cHHHHHhc--cCcee---cCchHHHhCCcc
Confidence            7899999999999987654333332221111 111111111  12222222  22445   489999999976

>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B

Probab=88.34  E-value=0.056  Score=37.54  Aligned_cols=18  Identities=28%  Similarity=0.641  Sum_probs=12.0

Q ss_pred             CchhhhhhhhhCCCCCCh
Q 023670          248 RCHTILNCARACPKGLNP  265 (279)
Q Consensus       248 ~C~~Cg~C~~vCP~gi~~  265 (279)
                      .|+.||.|..+||+++..
T Consensus         1 ~C~~Cg~C~~~CP~~~~~   18 (61)
T PF13534_consen    1 ACTQCGYCVPACPSYIAT   18 (61)
T ss_dssp             T----STTGGGSHHHHHC
T ss_pred             CCCCCCcCcccCCCcccc
Confidence            499999999999988863

...

>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []

Probab=87.38  E-value=0.39  Score=31.06  Aligned_cols=24  Identities=25%  Similarity=0.710  Sum_probs=18.2

Q ss_pred             CCCCCCccCeeEEEECCe--eecccc
Q 023670           98 RSCREGICGSCAMNIDGC--NGLACL  121 (279)
Q Consensus        98 ~~c~~g~CG~C~v~inG~--~~lAC~  121 (279)
                      -.|..|+|+.|.|...+.  ..+.|.
T Consensus         4 M~CG~G~C~~C~v~~~~~~~~~~vC~   29 (40)
T PF10418_consen    4 MACGVGACGGCVVPVKDGDGYKRVCK   29 (40)
T ss_dssp             -SSSSSSS-TTEEECSSTTSEEETTT
T ss_pred             ccCCCcEeCCcEeeeecCCcCEEEeC
Confidence            469999999999998865  666775

The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.

>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N

Probab=87.05  E-value=0.029  Score=38.38  Aligned_cols=21  Identities=33%  Similarity=0.664  Sum_probs=13.5

Q ss_pred             ccCchhhhhhhhhCCCCCChH
Q 023670          246 LYRCHTILNCARACPKGLNPG  266 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi~~~  266 (279)
                      +..|+.||.|..+||+.....
T Consensus         2 ~~~Ci~Cg~C~~~CP~~~~~~   22 (57)
T PF13183_consen    2 LSKCIRCGACTSVCPVYRNTG   22 (57)
T ss_dssp             HHC--S-SHHHHCSHHHHHHH
T ss_pred             HHHccCccChHHHChhhhccc
Confidence            357999999999999555443

...

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=86.74  E-value=0.42  Score=42.21  Aligned_cols=40  Identities=30%  Similarity=0.620  Sum_probs=25.6

Q ss_pred             hHHHHHHHcccCCCCCcccc--CCCCCCccCeeEEEECCeeecccc
Q 023670           78 MVLDALIKIKSEIDPSLTFR--RSCREGICGSCAMNIDGCNGLACL  121 (279)
Q Consensus        78 tvLdal~~~~~~~dptl~~~--~~c~~g~CG~C~v~inG~~~lAC~  121 (279)
                      .+.++|++.|.  +-.+.+.  ..|..|+||+|.|..+|+  ++|.
T Consensus       181 ~~~~~L~~~g~--~~~i~~e~f~~cg~g~C~~C~v~~~~~--~~c~  222 (233)
T cd06220         181 KVLEILDERGV--RAQFSLERYMKCGIGICGSCCIDPTGL--RVCR  222 (233)
T ss_pred             HHHHHHHhcCC--cEEEEecccccCcCCCcCccEeccCCe--EEeC
Confidence            34455555542  1123332  259999999999999984  5775

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=86.20  E-value=0.34  Score=44.49  Aligned_cols=43  Identities=28%  Similarity=0.478  Sum_probs=31.0

Q ss_pred             HHHHHHHcccC---CCCCccccCCCCCCccCeeEEEECCeeecccc
Q 023670           79 VLDALIKIKSE---IDPSLTFRRSCREGICGSCAMNIDGCNGLACL  121 (279)
Q Consensus        79 vLdal~~~~~~---~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~  121 (279)
                      +.++|++.|..   .--+|.++..|..|.||+|.|..++...++|.
T Consensus       227 v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~~~~~~~~c~  272 (289)
T PRK08345        227 VFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGTSTSIKYVCK  272 (289)
T ss_pred             HHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCCCCcceEEeC
Confidence            56666666531   12357778889999999999998885557885

>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]

Probab=85.52  E-value=0.4  Score=41.72  Aligned_cols=31  Identities=29%  Similarity=0.494  Sum_probs=25.4

Q ss_pred             ccCchhhhhhhhhCCCCC----ChHHHHHHHHHHH
Q 023670          246 LYRCHTILNCARACPKGL----NPGKQIINIKQLQ  276 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi----~~~~~I~~lR~~~  276 (279)
                      +..|.+||.|+..||.|.    ++-.+|..++.-+
T Consensus        38 l~~C~QCG~CT~sCPs~r~t~y~pR~ii~~~~~g~   72 (195)
T COG1150          38 LEGCYQCGTCTGSCPSGRFTDYSPRKIIRKARLGL   72 (195)
T ss_pred             HhHhhccCcccCCCCCcccCCCCHHHHHHHHHccc
Confidence            567999999999999875    6778888887543

>PLN00071 photosystem I subunit VII; Provisional

Probab=85.04  E-value=0.28  Score=36.13  Aligned_cols=27  Identities=30%  Similarity=0.886  Sum_probs=19.2

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCH
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGP  215 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP  215 (279)
                      ...|+.||.|..+||.....-..|.|+
T Consensus        45 ~~~C~~Cg~C~~~CP~~Ai~~~~~~~~   71 (81)
T PLN00071         45 TEDCVGCKRCESACPTDFLSVRVYLGH   71 (81)
T ss_pred             CCcCcChhhHHhhcCCccceEeeeecc
Confidence            467999999999999764332334443

>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC

Probab=84.91  E-value=0.41  Score=35.25  Aligned_cols=19  Identities=32%  Similarity=0.723  Sum_probs=16.6

Q ss_pred             CccCchhhhhhhhhCCCCC
Q 023670          245 KLYRCHTILNCARACPKGL  263 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....|+.||.|..+||+++
T Consensus         6 ~~~~Ci~C~~Cv~~CP~~~   24 (80)
T TIGR03048         6 IYDTCIGCTQCVRACPTDV   24 (80)
T ss_pred             cCCcCcCcchHHHHCCccc
Confidence            3578999999999999875

Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.

>COG1145 NapF Ferredoxin [Energy production and conversion]

Probab=84.78  E-value=0.24  Score=37.19  Aligned_cols=18  Identities=28%  Similarity=0.726  Sum_probs=15.9

Q ss_pred             CccCchhhhhhhhhCCCC
Q 023670          245 KLYRCHTILNCARACPKG  262 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~g  262 (279)
                      ....|+.||.|+.+||.+
T Consensus        27 ~~~~Ci~Cg~C~~~CP~~   44 (99)
T COG1145          27 DAEKCIGCGLCVKVCPTG   44 (99)
T ss_pred             CccccCCCCCchhhCCHH
Confidence            346699999999999998

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=84.72  E-value=3.4  Score=28.99  Aligned_cols=41  Identities=17%  Similarity=0.135  Sum_probs=30.0

Q ss_pred             eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeee---ccccccccCC
Q 023670           71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNG---LACLTKISPS  127 (279)
Q Consensus        71 ~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~---lAC~t~v~~g  127 (279)
                      ++++ +.||.++|...+.  .+       -      ..+|++||..+   ..+.+.+.+|
T Consensus        11 ~~~~-~~tl~~lL~~l~~--~~-------~------~vav~vNg~iv~r~~~~~~~l~~g   54 (66)
T PRK05659         11 ELPD-GESVAALLAREGL--AG-------R------RVAVEVNGEIVPRSQHASTALREG   54 (66)
T ss_pred             EcCC-CCCHHHHHHhcCC--CC-------C------eEEEEECCeEeCHHHcCcccCCCC
Confidence            4456 7999999998763  11       0      26899999654   3799999986

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=84.42  E-value=0.51  Score=48.82  Aligned_cols=29  Identities=31%  Similarity=0.423  Sum_probs=23.8

Q ss_pred             CccCchhhhhhhhhCCCCCChHHHHHHHH
Q 023670          245 KLYRCHTILNCARACPKGLNPGKQIINIK  273 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR  273 (279)
                      ....|+.||.|+.+||.++-+..+...++
T Consensus       368 ~e~~CI~CG~Cv~aCP~~llP~~l~~~~~  396 (695)
T PRK05035        368 PEQPCIRCGACADACPASLLPQQLYWFAK  396 (695)
T ss_pred             chhhcCCcccHHHHCCccchhhhHHHhhh
Confidence            45789999999999999998877665444

>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=83.89  E-value=0.72  Score=36.60  Aligned_cols=29  Identities=28%  Similarity=0.513  Sum_probs=19.6

Q ss_pred             ccCchhh--hhhhhhCCCCCChHHHHHHHHH
Q 023670          246 LYRCHTI--LNCARACPKGLNPGKQIINIKQ  274 (279)
Q Consensus       246 ~~~C~~C--g~C~~vCP~gi~~~~~I~~lR~  274 (279)
                      ..+|+.|  --|...||.++|+.+.|..++.
T Consensus        21 a~rC~~c~~~pC~~aCP~~~dip~~i~~i~~   51 (111)
T PF14691_consen   21 ASRCLQCEDPPCQAACPAHIDIPEYIRLIRE   51 (111)
T ss_dssp             HHHS---TT-HHHHTSTT---HHHHHHHHHC
T ss_pred             HhhccCCCCCCcccCCCCCCcHHHHHHHHHC
Confidence            5689999  6899999999999999998874

>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]

Probab=83.76  E-value=0.49  Score=47.46  Aligned_cols=28  Identities=29%  Similarity=0.530  Sum_probs=25.3

Q ss_pred             ccCchhhhhhhhhCCCCCChHHHHHHHH
Q 023670          246 LYRCHTILNCARACPKGLNPGKQIINIK  273 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi~~~~~I~~lR  273 (279)
                      ...|+.||+|..+||.++++.+++....
T Consensus       399 a~kc~~cG~C~~~CP~~l~i~eam~~A~  426 (772)
T COG1152         399 ARKCTYCGNCMRACPNELDIPEAMEYAA  426 (772)
T ss_pred             HHhcccccchhccCCcccchHHHHHHhh
Confidence            5789999999999999999999987665

>CHL00065 psaC photosystem I subunit VII

Probab=83.62  E-value=0.47  Score=34.99  Aligned_cols=18  Identities=33%  Similarity=0.802  Sum_probs=15.9

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||.|+.+||.++
T Consensus         8 ~~~Ci~Cg~C~~~CP~~~   25 (81)
T CHL00065          8 YDTCIGCTQCVRACPTDV   25 (81)
T ss_pred             cccCCChhHHHHHCCccc
Confidence            457999999999999875

>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]

Probab=83.40  E-value=0.5  Score=42.36  Aligned_cols=60  Identities=30%  Similarity=0.582  Sum_probs=42.7

Q ss_pred             hhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          184 AKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       184 ~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+..-.-|+.||.|.+.||.....   -.||             +              ....+|..||.|...||..+
T Consensus       184 ~ll~qg~~C~G~~TC~A~CP~~ai~---c~Gc-------------~--------------g~~~~~~~~Ga~~v~~~rs~  233 (247)
T COG1941         184 CLLEQGLPCMGCGTCAASCPSRAIP---CRGC-------------R--------------GNIPRCIKCGACFVSCPRSK  233 (247)
T ss_pred             eeecCCCcccCchhhhccCCccCCc---ccCC-------------c--------------CCcccchhhhHHHHHHhHHh
Confidence            3444555899999999999976421   1121             1              13567999999999999998


Q ss_pred             ChHHHHHHHHH
Q 023670          264 NPGKQIINIKQ  274 (279)
Q Consensus       264 ~~~~~I~~lR~  274 (279)
                      -+ ++|++|..
T Consensus       234 ~~-ei~~~l~~  243 (247)
T COG1941         234 GP-EIIEELKD  243 (247)
T ss_pred             hH-HHHHHhhh
Confidence            76 77777653

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional

Probab=83.39  E-value=0.48  Score=37.75  Aligned_cols=19  Identities=26%  Similarity=0.767  Sum_probs=16.7

Q ss_pred             CccCchhhhhhhhhCCCCC
Q 023670          245 KLYRCHTILNCARACPKGL  263 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....|+.||.|+.+||.++
T Consensus        40 ~~~~Ci~C~~C~~~CP~~a   58 (120)
T PRK08348         40 DVDKCVGCRMCVTVCPAGV   58 (120)
T ss_pred             CcccCcCcccHHHHCCccc
Confidence            3578999999999999876

>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed

Probab=83.23  E-value=0.41  Score=37.11  Aligned_cols=19  Identities=32%  Similarity=0.770  Sum_probs=16.6

Q ss_pred             CccCchhhhhhhhhCCCCC
Q 023670          245 KLYRCHTILNCARACPKGL  263 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....|+.||.|+.+||.++
T Consensus        14 d~~~Ci~C~~Cv~aCP~~a   32 (103)
T PRK09626         14 DESRCKACDICVSVCPAGV   32 (103)
T ss_pred             CcccccCCcchhhhcChhh
Confidence            3568999999999999875

>COG1146 Ferredoxin [Energy production and conversion]

Probab=82.77  E-value=0.45  Score=33.95  Aligned_cols=20  Identities=35%  Similarity=0.776  Sum_probs=17.3

Q ss_pred             hcccccCcccCcccCCCCCc
Q 023670          186 LDGMYECILCACCSTSCPSY  205 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~  205 (279)
                      ..+.+.|+.||.|..+||+.
T Consensus        37 ~~~~e~C~~C~~C~~~CP~~   56 (68)
T COG1146          37 VARPEECIDCGLCELACPVG   56 (68)
T ss_pred             EeccccCccchhhhhhCCcc
Confidence            45678899999999999976

>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific

Probab=82.67  E-value=0.4  Score=35.98  Aligned_cols=19  Identities=16%  Similarity=0.501  Sum_probs=16.4

Q ss_pred             CccCchhhhhhhhhCCCCC
Q 023670          245 KLYRCHTILNCARACPKGL  263 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....|+.||.|+.+||.++
T Consensus        19 ~~~~Ci~C~~Cv~~CP~~~   37 (91)
T TIGR02936        19 DQEKCIGCGRCYKVCGRDV   37 (91)
T ss_pred             CHhHCCCcchHHHHcChhh
Confidence            4567999999999999775

Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.

>PRK02651 photosystem I subunit VII; Provisional

Probab=82.55  E-value=0.34  Score=35.62  Aligned_cols=28  Identities=32%  Similarity=0.873  Sum_probs=19.8

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHH
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPA  216 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~  216 (279)
                      ...|+.||.|+.+||.....-..|+||+
T Consensus        45 ~~~C~~Cg~C~~~CP~~ai~~~~~~~~~   72 (81)
T PRK02651         45 TEDCVGCKRCETACPTDFLSIRVYLGAE   72 (81)
T ss_pred             CCcCCChhhhhhhcCCCceEEEEEeccc
Confidence            4579999999999997543223456653

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=82.37  E-value=5.3  Score=27.99  Aligned_cols=41  Identities=17%  Similarity=0.149  Sum_probs=29.2

Q ss_pred             eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeec---cccccccCC
Q 023670           71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL---ACLTKISPS  127 (279)
Q Consensus        71 ~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~l---AC~t~v~~g  127 (279)
                      ++++ ++||.|+|...+.  .|             ...+|.+||+.+.   --.+.+.+|
T Consensus         9 ~~~~-~~tv~~ll~~l~~--~~-------------~~v~v~vN~~iv~~~~~~~~~L~~g   52 (64)
T TIGR01683         9 EVED-GLTLAALLESLGL--DP-------------RRVAVAVNGEIVPRSEWDDTILKEG   52 (64)
T ss_pred             EcCC-CCcHHHHHHHcCC--CC-------------CeEEEEECCEEcCHHHcCceecCCC
Confidence            4456 7899999998863  22             2379999998764   445677766

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>PRK09477 napH quinol dehydrogenase membrane component; Provisional

Probab=82.27  E-value=0.98  Score=41.25  Aligned_cols=20  Identities=20%  Similarity=0.650  Sum_probs=17.2

Q ss_pred             CccCchhhhhhhhhCCCCCC
Q 023670          245 KLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ....|+.|+.|..+||.++.
T Consensus       206 d~~~C~~C~~C~~~CP~~~i  225 (271)
T PRK09477        206 DRQKCTRCMDCFHVCPEPQV  225 (271)
T ss_pred             CcccCcccCCcCCcCCCcce
Confidence            45789999999999999864

>PRK05888 NADH dehydrogenase subunit I; Provisional

Probab=81.61  E-value=0.66  Score=39.05  Aligned_cols=19  Identities=32%  Similarity=0.560  Sum_probs=16.4

Q ss_pred             CccCchhhhhhhhhCCCCC
Q 023670          245 KLYRCHTILNCARACPKGL  263 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....|+.||.|+.+||.++
T Consensus        56 ~~~~Ci~C~~C~~~CP~~a   74 (164)
T PRK05888         56 GEERCIACKLCAAICPADA   74 (164)
T ss_pred             CCccCCcccChHHHcCccc
Confidence            3568999999999999874

>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family

Probab=81.60  E-value=0.7  Score=41.83  Aligned_cols=18  Identities=22%  Similarity=0.743  Sum_probs=16.2

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.|+.|.++||.++
T Consensus       200 ~~~C~~C~~C~~vCP~~~  217 (255)
T TIGR02163       200 REKCTNCMDCFNVCPEPQ  217 (255)
T ss_pred             cccCeEcCCccCcCCCCc
Confidence            467999999999999885

Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=81.57  E-value=0.85  Score=44.54  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=22.3

Q ss_pred             cCccCchhhhhhhhhCCCCCChHHHHH
Q 023670          244 FKLYRCHTILNCARACPKGLNPGKQII  270 (279)
Q Consensus       244 ~~~~~C~~Cg~C~~vCP~gi~~~~~I~  270 (279)
                      .....|+.||.|..+||.++.+..+..
T Consensus       360 ~~~~~Ci~Cg~C~~vCP~~l~p~~l~~  386 (435)
T TIGR01945       360 SPEKPCIRCGKCVQVCPMNLLPQQLNW  386 (435)
T ss_pred             ccCCcCcCccchhhhCccchhhHHHHH
Confidence            356899999999999999987766544

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E

Probab=81.43  E-value=0.89  Score=32.26  Aligned_cols=13  Identities=15%  Similarity=0.695  Sum_probs=10.9

Q ss_pred             EEEEEeeCCCCCC
Q 023670           49 KFQIYRWNPDSPS   61 (279)
Q Consensus        49 ~~~i~R~~p~~~~   61 (279)
                      ++|||||||++.+
T Consensus        40 ~iKIfkyd~~tNe   52 (63)
T PF14157_consen   40 QIKIFKYDEDTNE   52 (63)
T ss_dssp             EEEEEEEETTTTE
T ss_pred             eEEEEEeCCCCCe
Confidence            6899999998753

>PF13459 Fer4_15: 4Fe-4S single cluster domain

Probab=81.00  E-value=0.56  Score=33.18  Aligned_cols=19  Identities=26%  Similarity=0.644  Sum_probs=16.4

Q ss_pred             ccccCcccCcccCCCCCcc
Q 023670          188 GMYECILCACCSTSCPSYW  206 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~  206 (279)
                      +..+||.||.|+..||.+.
T Consensus         4 D~~~C~gcg~C~~~aP~vF   22 (65)
T PF13459_consen    4 DRDRCIGCGLCVELAPEVF   22 (65)
T ss_pred             ecccCcCccHHHhhCCccE
Confidence            4678999999999999754

>CHL00014 ndhI NADH dehydrogenase subunit I

Probab=80.58  E-value=0.75  Score=38.96  Aligned_cols=19  Identities=32%  Similarity=0.742  Sum_probs=16.7

Q ss_pred             ccCchhhhhhhhhCCCCCC
Q 023670          246 LYRCHTILNCARACPKGLN  264 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ...|+.||.|+.+||.++.
T Consensus        58 ~~~Ci~Cg~C~~aCP~~~~   76 (167)
T CHL00014         58 FDKCIACEVCVRVCPIDLP   76 (167)
T ss_pred             cccCCCcCcHHHhCCCCCc
Confidence            5679999999999999863

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=80.33  E-value=1.1  Score=44.45  Aligned_cols=27  Identities=33%  Similarity=0.484  Sum_probs=23.0

Q ss_pred             cCchhhhhhhhhCCCCCChHHHHHHHH
Q 023670          247 YRCHTILNCARACPKGLNPGKQIINIK  273 (279)
Q Consensus       247 ~~C~~Cg~C~~vCP~gi~~~~~I~~lR  273 (279)
                      ..|..|+.|+++||+++.+..+-...+
T Consensus       365 ~sCi~C~~C~d~CP~~Llp~ql~~~a~  391 (529)
T COG4656         365 QSCIRCSLCADACPVNLLPQQLYWFAK  391 (529)
T ss_pred             hccccHHHHHHhCccccCHHHhhHHhh
Confidence            389999999999999999888665544

>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein

Probab=80.13  E-value=0.76  Score=39.62  Aligned_cols=19  Identities=32%  Similarity=0.784  Sum_probs=16.8

Q ss_pred             CccCchhhhhhhhhCCCCC
Q 023670          245 KLYRCHTILNCARACPKGL  263 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....|+.||.|+.+||.++
T Consensus        60 ~~~kCi~Cg~C~~aCP~~a   78 (183)
T TIGR00403        60 EFDKCIACEVCVRVCPINL   78 (183)
T ss_pred             CcccCcCcCChhhhCCCCc
Confidence            3568999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
1yq3_B	252	Avian Respiratory Complex Ii With Oxaloacetate And		3e-91
1zoy_B	252	Crystal Structure Of Mitochondrial Respiratory Comp		1e-86
3abv_B	252	Crystal Structure Of Porcine Heart Mitochondrial Co		1e-86
3vr8_B	282	Mitochondrial Rhodoquinol-Fumarate Reductase From T		3e-81
1nek_B	238	Complex Ii (Succinate Dehydrogenase) From E. Coli W		9e-67
2wp9_B	238	Crystal Structure Of The E. Coli Succinate:quinone		1e-65
1kf6_B	243	E. Coli Quinol-Fumarate Reductase With Bound Inhibi		3e-30
2bs2_B	241	Quinol:fumarate Reductase From Wolinella Succinogen		6e-25
1qlb_B	239	Respiratory Complex Ii-Like Fumarate Reductase From		7e-25

>pdb|1YQ3|B Chain B, Avian Respiratory Complex Ii With Oxaloacetate And Ubiquinone Length = 252

Iteration: 1
 Score =  331 bits (848), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 153/237 (64%), Positives = 186/237 (78%), Gaps = 2/237 (0%)
Query: 41  ASANTDTKKFQIYRWNPDSPS-KPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRS 99
           A+A +  KKF IYRW+PD P  KP ++ +E++L +CGPMVLDALIKIK+E+D +LTFRRS
Sbjct: 5   AAATSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRS 64
Query: 100 CREGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNFYNQYKS 158
           CREGICGSCAMNI G N LAC  KI P  S +T I PLPHM+V+KDLV D++NFY QYKS
Sbjct: 65  CREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKS 124
Query: 159 IEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAAL 218
           IEP+LK+K+      ++  QS +DR KLDG+YECILCACCSTSCPSYWW  + YLGPA L
Sbjct: 125 IEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVL 184
Query: 219 LHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 275
           + A RW+ DSRD+YT+ERL  + D F LYRCHTI+NC R CPKGLNPGK I  IK++
Sbjct: 185 MQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKM 241

>pdb|1ZOY|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii From Porcine Heart At 2.4 Angstroms Length = 252

Iteration: 1
 Score =  316 bits (809), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 147/230 (63%), Positives = 179/230 (77%), Gaps = 2/230 (0%)
Query: 48  KKFQIYRWNPD-SPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICG 106
           KKF IYRW+PD +  KP ++ +EI+L  CGPMVLDALIKIK+EID +LTFRRSCREGICG
Sbjct: 12  KKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGICG 71
Query: 107 SCAMNIDGCNGLACLTKISPS-GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 165
           SCAMNI+G N LAC  +I  +    S I PLPHM+VIKDLV D++NFY QYKSIEP+LK+
Sbjct: 72  SCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 131
Query: 166 KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWI 225
           K+      ++  QS ++R KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A RW+
Sbjct: 132 KDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWM 191
Query: 226 SDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 275
            DSRD++T+ERL  + D F LYRCHTI+NC   CPKGLNPGK I  IK++
Sbjct: 192 IDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKM 241

>pdb|3ABV|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex Ii Bound With N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide Length = 252

Iteration: 1
 Score =  316 bits (809), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 147/230 (63%), Positives = 179/230 (77%), Gaps = 2/230 (0%)
Query: 48  KKFQIYRWNPD-SPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICG 106
           KKF IYRW+PD +  KP ++ +EI+L  CGPMVLDALIKIK+EID +LTFRRSCREGICG
Sbjct: 12  KKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGICG 71
Query: 107 SCAMNIDGCNGLACLTKISPS-GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 165
           SCAMNI+G N LAC  +I  +    S I PLPHM+VIKDLV D++NFY QYKSIEP+LK+
Sbjct: 72  SCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 131
Query: 166 KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWI 225
           K+      ++  QS ++R KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A RW+
Sbjct: 132 KDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWM 191
Query: 226 SDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 275
            DSRD++T+ERL  + D F LYRCHTI+NC   CPKGLNPGK I  IK++
Sbjct: 192 IDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKM 241

>pdb|3VR8|B Chain B, Mitochondrial Rhodoquinol-Fumarate Reductase From The Parasitic Nematode Ascaris Suum Length = 282

Iteration: 1
 Score =  297 bits (761), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 141/233 (60%), Positives = 176/233 (75%), Gaps = 2/233 (0%)
Query: 48  KKFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICG 106
           K F+IYR+NP+ P +KP+L++F+++L +CG MVLDALIKIK+E+DP+LTFRRSCREGICG
Sbjct: 36  KTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICG 95
Query: 107 SCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 165
           SCAMNI G N LAC+  I  + S +T I PLPHMFVIKDLV DM  FY QY SI+PWL++
Sbjct: 96  SCAMNIAGENTLACICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQK 155
Query: 166 KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWI 225
           K    +  K+  QS K++ KLDG+YECILCACCS SCPSYWW ++ YLGPA L+ A RWI
Sbjct: 156 KTKINLGEKQQYQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWI 215
Query: 226 SDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK 278
            DSRD+   ERL  + D F  ++CHTI+NC + CPK LNP + I  IK L  K
Sbjct: 216 IDSRDDSAAERLARMQDGFSAFKCHTIMNCTKTCPKHLNPARAIGEIKMLLTK 268

>pdb|1NEK|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With Ubiquinone Bound Length = 238

Iteration: 1
 Score =  249 bits (637), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 122/235 (51%), Positives = 162/235 (68%), Gaps = 6/235 (2%)
Query: 49  KFQIYRWNPDSPSKPELKEFEINLKEC-GPMVLDALIKIKSEIDPSLTFRRSCREGICGS 107
           +F IYR+NPD    P ++++ +   E    M+LDALI++K E DPSL+FRRSCREG+CGS
Sbjct: 4   EFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCGS 62
Query: 108 CAMNIDGCNGLACLTKISP---SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 164
             +N++G NGLAC+T IS     G    I PLP + VI+DLVVDM  FY QY+ I+P+L 
Sbjct: 63  DGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLL 122
Query: 165 RKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRW 224
                P P +E  Q  + R KLDG+YECILCACCSTSCPS+WW  + ++GPA LL A R+
Sbjct: 123 NNGQNP-PAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRF 181
Query: 225 ISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279
           + DSRD  T  RL+ + D F ++RCH+I+NC   CPKGLNP + I +IK + L+R
Sbjct: 182 LIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQR 236

>pdb|2WP9|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone Oxidoreductase (Sqr) Sdhb His207thr Mutant Length = 238

Iteration: 1
 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/235 (51%), Positives = 161/235 (68%), Gaps = 6/235 (2%)
Query: 49  KFQIYRWNPDSPSKPELKEFEINLKEC-GPMVLDALIKIKSEIDPSLTFRRSCREGICGS 107
           +F IYR+NPD    P ++++ +   E    M+LDALI++K E DPSL+FRRSCREG+CGS
Sbjct: 4   EFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCGS 62
Query: 108 CAMNIDGCNGLACLTKISP---SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 164
             +N++G NGLAC+T IS     G    I PLP + VI+DLVVDM  FY QY+ I+P+L 
Sbjct: 63  DGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLL 122
Query: 165 RKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRW 224
                P P +E  Q  + R KLDG+YECILCACCSTSCPS+WW  + ++GPA LL A R+
Sbjct: 123 NNGQNP-PAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRF 181
Query: 225 ISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279
           + DSRD  T  RL+ + D F ++RC +I+NC   CPKGLNP + I +IK + L+R
Sbjct: 182 LIDSRDTETDSRLDGLSDAFSVFRCTSIMNCVSVCPKGLNPTRAIGHIKSMLLQR 236

>pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor Hqno Length = 243

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 3/221 (1%)
Query: 49  KFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSC 108
           K ++ R+NP+  + P    +E+   +    +LDAL  IK  + P L++R SCR  ICGSC
Sbjct: 7   KIEVVRYNPEVDTAPHSAFYEVPY-DATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSC 65
Query: 109 AMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNP 168
            M ++    LAC T +        +  L +  + +DLVVDMT+F    ++I+P++   + 
Sbjct: 66  GMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSR 125
Query: 169 PPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDS 228
               G  I Q+    AK      CI C  C  +CP +    E ++GPAA+  A+R+  DS
Sbjct: 126 TADQGTNI-QTPAQMAKYHQFSGCINCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDS 183
Query: 229 RDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQI 269
           RD   KER+  ++ +  ++ C  +  C+  CPK ++P   I
Sbjct: 184 RDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAI 224

>pdb|2BS2|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes Length = 241

Iteration: 1
 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 115/223 (51%), Gaps = 16/223 (7%)
Query: 50  FQIYRWNPDSP-SKPELKEFEINLKECGPM-VLDALIKIKSEIDPSLTFRRSCREGICGS 107
            ++++++P S  SKP  +E++I  +E   M +   L  I+   DP L F   CR GICGS
Sbjct: 7   IRVFKYDPQSAVSKPHFQEYKI--EEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGS 64
Query: 108 CAMNIDGCNGLAC--LTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQY-KSIEPWL- 163
           C M I+G   LAC  LTK    G   T+ PLP   +IKDL VD  N++N   + +E W+ 
Sbjct: 65  CGMMINGRPSLACRTLTKDFEDG-VITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIH 123
Query: 164 --KRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHA 221
             K  +   +  +  P+  ++  +LD    CI C CC  +C +     E ++G A L   
Sbjct: 124 AQKEHDISKLEERIEPEVAQEVFELD---RCIECGCCIAACGTK-IMREDFVGAAGLNRV 179
Query: 222 NRWISDSRDEYTKE-RLEAIDDEFKLYRCHTILNCARACPKGL 263
            R++ D  DE T E   E I D+  ++ C T+L C   CPK L
Sbjct: 180 VRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNL 222

>pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From Wolinella Succinogenes Length = 239

Iteration: 1
 Score =  110 bits (276), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 115/222 (51%), Gaps = 16/222 (7%)
Query: 51  QIYRWNPDSP-SKPELKEFEINLKECGPM-VLDALIKIKSEIDPSLTFRRSCREGICGSC 108
           ++++++P S  SKP  +E++I  +E   M +   L  I+   DP L F   CR GICGSC
Sbjct: 8   RVFKYDPQSAVSKPHFQEYKI--EEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSC 65
Query: 109 AMNIDGCNGLAC--LTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQY-KSIEPWL-- 163
            M I+G   LAC  LTK    G   T+ PLP   +IKDL VD  N++N   + +E W+  
Sbjct: 66  GMMINGRPSLACRTLTKDFEDG-VITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHA 124
Query: 164 -KRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAN 222
            K  +   +  +  P+  ++  +LD    CI C CC  +C +     E ++G A L    
Sbjct: 125 QKEHDISKLEERIEPEVAQEVFELD---RCIECGCCIAACGTK-IMREDFVGAAGLNRVV 180
Query: 223 RWISDSRDEYTKE-RLEAIDDEFKLYRCHTILNCARACPKGL 263
           R++ D  DE T E   E I D+  ++ C T+L C   CPK L
Sbjct: 181 RFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNL 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
2wdq_B	238	Succinate dehydrogenase iron-sulfur subunit; succi	1e-143
1kf6_B	243	Fumarate reductase iron-sulfur protein; respiratio	1e-143
2bs2_B	241	Quinol-fumarate reductase iron-sulfur subunit B; 2	1e-141
3vr8_B	282	Iron-sulfur subunit of succinate dehydrogenase; me	1e-135
2h88_B	252	Succinate dehydrogenase IP subunit; complex II, me	1e-132
3kwl_A	514	Uncharacterized protein; putative oxidoreductase,	3e-56

>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B* Length = 238

 Score =  402 bits (1034), Expect = e-143
 Identities = 122/235 (51%), Positives = 162/235 (68%), Gaps = 6/235 (2%)

Query: 49  KFQIYRWNPDSPSKPELKEFEINLKECGPM-VLDALIKIKSEIDPSLTFRRSCREGICGS 107
           +F IYR+NPD    P ++++ +   E   M +LDALI++K E DPSL+FRRSCREG+CGS
Sbjct: 4   EFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCGS 62

Query: 108 CAMNIDGCNGLACLTKIS---PSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 164
             +N++G NGLAC+T IS     G    I PLP + VI+DLVVDM  FY QY+ I+P+L 
Sbjct: 63  DGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLL 122

Query: 165 RKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRW 224
                P P +E  Q  + R KLDG+YECILCACCSTSCPS+WW  + ++GPA LL A R+
Sbjct: 123 NNGQNP-PAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRF 181

Query: 225 ISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279
           + DSRD  T  RL+ + D F ++RCH+I+NC   CPKGLNP + I +IK + L+R
Sbjct: 182 LIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQR 236

>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B* Length = 243

 Score =  400 bits (1029), Expect = e-143
 Identities = 72/237 (30%), Positives = 115/237 (48%), Gaps = 3/237 (1%)

Query: 43  ANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE 102
           A     K ++ R+NP+  + P    +E+       + LDAL  IK  + P L++R SCR 
Sbjct: 1   AEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSL-LDALGYIKDNLAPDLSYRWSCRM 59

Query: 103 GICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPW 162
            ICGSC M ++    LAC T +        +  L +  + +DLVVDMT+F    ++I+P+
Sbjct: 60  AICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPY 119

Query: 163 LKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAN 222
           +   +          Q+    AK      CI C  C  +CP +    E ++GPAA+  A+
Sbjct: 120 IIGNSRTA-DQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPE-FIGPAAITLAH 177

Query: 223 RWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279
           R+  DSRD   KER+  ++ +  ++ C  +  C+  CPK ++P   I   K    K 
Sbjct: 178 RYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKD 234

>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B* Length = 241

 Score =  395 bits (1016), Expect = e-141
 Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 6/237 (2%)

Query: 47  TKKFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGIC 105
               ++++++P S  SKP  +E++I        +   L  I+   DP L F   CR GIC
Sbjct: 4   MLTIRVFKYDPQSAVSKPHFQEYKIEE-APSMTIFIVLNMIRETYDPDLNFDFVCRAGIC 62

Query: 106 GSCAMNIDGCNGLACLTKISPSGSAS-TITPLPHMFVIKDLVVDMTNFYN-QYKSIEPWL 163
           GSC M I+G   LAC T          T+ PLP   +IKDL VD  N++N   + +E W+
Sbjct: 63  GSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWI 122

Query: 164 KRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANR 223
             +    +   E     +   ++  +  CI C CC  +C +     + ++G A L    R
Sbjct: 123 HAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMRED-FVGAAGLNRVVR 181

Query: 224 WISDSRDEYTKERL-EAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279
           ++ D  DE T E   E I D+  ++ C T+L C   CPK L    +I  +++  +  
Sbjct: 182 FMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMVSV 238

>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B* Length = 282

 Score =  383 bits (985), Expect = e-135
 Identities = 143/268 (53%), Positives = 181/268 (67%), Gaps = 3/268 (1%)

Query: 14  AAVAQPARLLTARFHASEAEAQKVEPKASANTDTKKFQIYRWNPDSP-SKPELKEFEINL 72
                  R L     A+   +       +     K F+IYR+NP+ P +KP+L++F+++L
Sbjct: 3   RGSTSVCRSLELVTQAARYASAATAAAPTG-KRIKTFEIYRFNPEEPGAKPKLQKFDVDL 61

Query: 73  KECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSAS- 131
            +CG MVLDALIKIK+E+DP+LTFRRSCREGICGSCAMNI G N LAC+  I  + S + 
Sbjct: 62  DKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLACICNIDQNTSKTT 121

Query: 132 TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYE 191
            I PLPHMFVIKDLV DM  FY QY SI+PWL++K    +  K+  QS K++ KLDG+YE
Sbjct: 122 KIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQKKTKINLGEKQQYQSIKEQEKLDGLYE 181

Query: 192 CILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHT 251
           CILCACCS SCPSYWW ++ YLGPA L+ A RWI DSRD+   ERL  + D F  ++CHT
Sbjct: 182 CILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGFSAFKCHT 241

Query: 252 ILNCARACPKGLNPGKQIINIKQLQLKR 279
           I+NC + CPK LNP + I  IK L  K 
Sbjct: 242 IMNCTKTCPKHLNPARAIGEIKMLLTKM 269

>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ... Length = 252

 Score =  373 bits (960), Expect = e-132
 Identities = 151/244 (61%), Positives = 185/244 (75%), Gaps = 2/244 (0%)

Query: 38  EPKASANTDTKKFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTF 96
           +  A+A +  KKF IYRW+PD P  KP ++ +E++L +CGPMVLDALIKIK+E+D +LTF
Sbjct: 2   QTAAAATSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTF 61

Query: 97  RRSCREGICGSCAMNIDGCNGLACLTKISP-SGSASTITPLPHMFVIKDLVVDMTNFYNQ 155
           RRSCREGICGSCAMNI G N LAC  KI P     + I PLPHM+V+KDLV D++NFY Q
Sbjct: 62  RRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQ 121

Query: 156 YKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGP 215
           YKSIEP+LK+K+      ++  QS +DR KLDG+YECILCACCSTSCPSYWW  + YLGP
Sbjct: 122 YKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGP 181

Query: 216 AALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 275
           A L+ A RW+ DSRD+YT+ERL  + D F LYRCHTI+NC R CPKGLNPGK I  IK++
Sbjct: 182 AVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKM 241

Query: 276 QLKR 279
               
Sbjct: 242 MATY 245

>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori} Length = 514

 Score =  187 bits (477), Expect = 3e-56
 Identities = 32/256 (12%), Positives = 77/256 (30%), Gaps = 41/256 (16%)

Query: 28  HASEAEAQKVEPKASANTDTK-KFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKI 86
           H     +  + P+ S  +  K   +++R+  +    P  + + +  +E    +LD L ++
Sbjct: 4   HHHHHHSSGLVPRGSHMSVLKLHVKVFRFETNKDYNPAYESYFLEYQE-DQYLLDLLKQL 62

Query: 87  KSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA---CLTKISPSGSASTITPLPHMFVIK 143
           K      +++  +         A+ I+             ++       + PL   + +K
Sbjct: 63  KG-----VSYSENI--------ALKINQIAVFEDAKVSDLVAFFSKEWVLDPLSKRYALK 109

Query: 144 DLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCP 203
           DL++D       Y+     +                  ++ +L+           +   P
Sbjct: 110 DLMIDEKAVLKNYEDFFKQVPYITKG------------EKEELEKFI------QINFINP 151

Query: 204 SYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263
                +  YLG    L+    +     E     LE I            +          
Sbjct: 152 QT---NPKYLGDGFFLYVKWLMKRYPTE-RDRLLEMISQPESGVMNFLSV-AHYLYKNDD 206

Query: 264 NPGKQIINIKQLQLKR 279
           N   +I  ++++    
Sbjct: 207 NIDHEIYELQEILTNS 222

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
3vr8_B	282	Iron-sulfur subunit of succinate dehydrogenase; me	100.0
2h88_B	252	Succinate dehydrogenase IP subunit; complex II, me	100.0
2bs2_B	241	Quinol-fumarate reductase iron-sulfur subunit B; 2	100.0
2wdq_B	238	Succinate dehydrogenase iron-sulfur subunit; succi	100.0
1kf6_B	243	Fumarate reductase iron-sulfur protein; respiratio	100.0
3kwl_A	514	Uncharacterized protein; putative oxidoreductase,	100.0
1rm6_C	161	4-hydroxybenzoyl-COA reductase gamma subunit; xant	99.82
1t3q_A	168	Quinoline 2-oxidoreductase small subunit; QOR, mol	99.77
3i9v_3	783	NADH-quinone oxidoreductase subunit 3; electron tr	99.76
3c8y_A	574	Iron hydrogenase 1; dithiomethylether, H-cluster,	99.68
1ffv_A	163	CUTS, iron-sulfur protein of carbon monoxide dehyd	99.57
1n62_A	166	Carbon monoxide dehydrogenase small chain; CODH, m	99.56
3hrd_D	160	Nicotinate dehydrogenase small FES subunit; seleni	99.29
2w3s_A	462	Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2	99.02
1vlb_A	907	Aldehyde oxidoreductase; iron-sulphur cluster; HET	98.96
3nvw_A	164	Xanthine dehydrogenase/oxidase; hydroxylase, homod	98.95
1dgj_A	907	Aldehyde oxidoreductase; beta half-barrel, four-he	98.87
3cf4_A	807	Acetyl-COA decarboxylase/synthase alpha subunit; m	98.63
1frr_A	95	Ferredoxin I; electron transfer(iron-sulfur protei	98.6
1frd_A	98	Heterocyst [2Fe-2S] ferredoxin; electron transport	98.57
1jq4_A	98	Methane monooxygenase component C; [2Fe-2S] ferred	98.51
1awd_A	94	Ferredoxin; electron transport, eukaryotic, green	98.5
1a70_A	97	Ferredoxin; iron-sulfur protein, photosynthesis, e	98.48
1iue_A	98	Ferredoxin; electron transport, iron-sulfur; 1.70A	98.48
1czp_A	98	Ferredoxin I; [2Fe-2S] protein, crystal reduced wi	98.43
1wri_A	93	Ferredoxin II, ferredoxin; electron transport; 1.2	98.31
2bt6_A	108	Adrenodoxin 1; ruthenium(II) bipyridyl complex, in	98.21
1l5p_A	93	Ferredoxin; [2Fe-2S] cluster, electron transfer, i	98.2
2wlb_A	103	ETP1-FD, electron transfer protein 1, mitochondria	98.17
2y5c_A	109	Adrenodoxin-like protein, mitochondrial; electron	98.08
3i9v_9	182	NADH-quinone oxidoreductase subunit 9; electron tr	98.04
3lxf_A	104	Ferredoxin; iron, iron-sulfur, metal-binding, meta	98.0
1doi_A	128	2Fe-2S ferredoxin; halophilic protein, redox prote	97.99
3ah7_A	113	[2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur	97.97
1xlq_A	106	Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidored	97.96
3unc_A	1332	Xanthine dehydrogenase/oxidase; oxidoreductase; HE	97.95
1i7h_A	111	Ferredoxin; 2Fe-2S,electron transport; 1.70A {Esch	97.95
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	97.94
1b9r_A	105	Protein (terpredoxin); structure from molmol, ferr	97.89
3hui_A	126	Ferredoxin; cytochrome P450, electron transfer, ir	97.86
1uwm_A	106	Ferredoxin VI, FDVI; electron transport, metal-bin	97.85
1jb0_C	80	Photosystem I iron-sulfur center; membrane protein	97.61
1xer_A	103	Ferredoxin; electron transport, iron-sulfur, dupli	97.58
2fdn_A	55	Ferredoxin; electron transport, iron-sulfur, 4Fe-4	97.58
1rgv_A	80	Ferredoxin; electron transport; 2.90A {Thauera aro	97.52
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	97.51
2fgo_A	82	Ferredoxin; allochromatium vinosum, [4Fe-4S] clust	97.48
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	97.42
2zvs_A	85	Uncharacterized ferredoxin-like protein YFHL; elec	97.41
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	97.39
3eun_A	82	Ferredoxin; electron transport, [4Fe-4S] cluster,	97.38
1hfe_L	421	Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg	97.29
1bc6_A	77	7-Fe ferredoxin; electron transport, iron-sulfur;	97.28
7fd1_A	106	FD1, protein (7-Fe ferredoxin I); electron transpo	97.24
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	97.23
1h98_A	78	Ferredoxin; electron transport, thermophilic, iron	97.02
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	96.97
1iqz_A	81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	96.92
2v2k_A	105	Ferredoxin; iron, transport, iron-sulfur, mycobact	96.88
1sj1_A	66	Ferredoxin; thermostability, iron-sulfur cluster,	96.78
1jnr_B	150	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.76
3gyx_B	166	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.74
3zyv_A	1335	AOH1; oxidoreductase, molybdenum cofactor; HET: MT	96.71
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	96.66
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	96.49
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.44
3n9z_C	123	Adrenodoxin; cytochrome P450, 22-hydroxycholestero	96.37
1ti6_B	274	Pyrogallol hydroxytransferase small subunit; molyb	95.86
2ivf_B	352	Ethylbenzene dehydrogenase beta-subunit; anaerobic	95.74
2vpz_B	195	NRFC protein; oxidoreductase, molybdopterin guanin	95.62
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.6
2ivf_B	352	Ethylbenzene dehydrogenase beta-subunit; anaerobic	95.58
1kqf_B	294	FDH-N beta S, formate dehydrogenase, nitrate-induc	95.53
1q16_B	512	Respiratory nitrate reductase 1 beta chain; membra	95.46
2vpz_B	195	NRFC protein; oxidoreductase, molybdopterin guanin	95.42
1h0h_B	214	Formate dehydrogenase (small subunit); tungsten se	94.9
1q16_B	512	Respiratory nitrate reductase 1 beta chain; membra	94.39
1kqf_B	294	FDH-N beta S, formate dehydrogenase, nitrate-induc	94.27
1ti6_B	274	Pyrogallol hydroxytransferase small subunit; molyb	93.89
1h0h_B	214	Formate dehydrogenase (small subunit); tungsten se	92.38
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	90.87
3mm5_B	366	Sulfite reductase, dissimilatory-type subunit BET;	89.74
2fgo_A	82	Ferredoxin; allochromatium vinosum, [4Fe-4S] clust	89.33
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	89.27
2fdn_A	55	Ferredoxin; electron transport, iron-sulfur, 4Fe-4	89.19
1jb0_C	80	Photosystem I iron-sulfur center; membrane protein	88.89
1rgv_A	80	Ferredoxin; electron transport; 2.90A {Thauera aro	88.76
3eun_A	82	Ferredoxin; electron transport, [4Fe-4S] cluster,	88.7
2zvs_A	85	Uncharacterized ferredoxin-like protein YFHL; elec	88.42
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	87.73
1xer_A	103	Ferredoxin; electron transport, iron-sulfur, dupli	87.52
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	87.16
3i9v_9	182	NADH-quinone oxidoreductase subunit 9; electron tr	86.62
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	85.82
3mm5_A	418	Sulfite reductase, dissimilatory-type subunit ALP;	85.58
1iqz_A	81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	85.47
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	83.33
2v2k_A	105	Ferredoxin; iron, transport, iron-sulfur, mycobact	82.51
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	82.24
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	82.19
7fd1_A	106	FD1, protein (7-Fe ferredoxin I); electron transpo	81.47
1h98_A	78	Ferredoxin; electron transport, thermophilic, iron	80.62
2pa8_D	265	DNA-directed RNA polymerase subunit D; ferredoxin-	80.54
1bc6_A	77	7-Fe ferredoxin; electron transport, iron-sulfur;	80.16

>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*

Probab=100.00  E-value=6.5e-65  Score=462.43  Aligned_cols=238  Identities=58%  Similarity=1.121  Sum_probs=215.7

Q ss_pred             CCCCCceeEEEEEeeCCCC-CCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecc
Q 023670           41 ASANTDTKKFQIYRWNPDS-PSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA  119 (279)
Q Consensus        41 ~~~~~~~~~~~i~R~~p~~-~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lA  119 (279)
                      +.+.+++++|+||||||+. +++||||+|+|+++++|+||||||+++++++||+|+|+.+|++|+||+|+|+|||++++|
T Consensus        29 ~~~~~~~~~~~I~R~~p~~~~~~p~~~~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~InG~~~la  108 (282)
T 3vr8_B           29 APTGKRIKTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLA  108 (282)
T ss_pred             ccCCCeeEEEEEEEeCCCCCCCCCCcEEEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEECCEEecc
Confidence            3456789999999999985 678999999999976579999999999987899999999999999999999999999999


Q ss_pred             ccccccC-CCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcc
Q 023670          120 CLTKISP-SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACC  198 (279)
Q Consensus       120 C~t~v~~-g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C  198 (279)
                      |.|++.+ .++.++||||++||||||||||++.||++|++++||+..+...+...++++|+++++++++++++||+||+|
T Consensus       109 C~t~v~~~~~~~~tIepL~~~pVikDLvvD~~~f~~~~~~v~p~l~~~~~~~~~~~~~~qs~~~~~~~~~~~~CI~CG~C  188 (282)
T 3vr8_B          109 CICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQKKTKINLGEKQQYQSIKEQEKLDGLYECILCACC  188 (282)
T ss_pred             hhhhHhHhcCCcEEeccCCCCceeeccccccHHHHHHHHHHhhhcCCCCCCCCCchhcccCHHHHHHHHhhhhCcccCcC
Confidence            9999983 467899999999999999999999999999999999987654322356788999999999999999999999


Q ss_pred             cCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670          199 STSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK  278 (279)
Q Consensus       199 ~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~  278 (279)
                      .++||++++++++|+||++++++++++.++++....++++.+.+..++|.|++||+|+.+||+||++.++|..+|+++++
T Consensus       189 ~~aCP~~~~~~~~~lGP~~li~a~r~~~d~rd~~~~erl~~l~~~~~l~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~  268 (282)
T 3vr8_B          189 SASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGFSAFKCHTIMNCTKTCPKHLNPARAIGEIKMLLTK  268 (282)
T ss_pred             cccCCceeccCCcCCCHHHHHHHHHHHhCCcccchHHHHHHHhhcCCcccChhhCCccccCcCCCCHHHHHHHHHHHHHH
Confidence            99999999887889999999999999999988766677776655678999999999999999999999999999999875

>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...

Probab=100.00  E-value=4.1e-57  Score=406.11  Aligned_cols=237  Identities=63%  Similarity=1.224  Sum_probs=207.5

Q ss_pred             CCCceeEEEEEeeCCCCCC-CCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccc
Q 023670           43 ANTDTKKFQIYRWNPDSPS-KPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL  121 (279)
Q Consensus        43 ~~~~~~~~~i~R~~p~~~~-~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~  121 (279)
                      +.+++++|+||||||+.+. +|||++|+|+++++|+||||||+++++++||+|+|+.+|+.|+||+|+|+|||++++||+
T Consensus         7 ~~~~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i~G~~~~aC~   86 (252)
T 2h88_B            7 ATSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACT   86 (252)
T ss_dssp             -CCCEEEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEETTEEEEGGG
T ss_pred             CCCceEEEEEEEeCCCCCCCCceEEEEEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEECCcEEcccc
Confidence            3467899999999999987 999999999997657999999999987679999999999999999999999999999999


Q ss_pred             ccccCC-CCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccC
Q 023670          122 TKISPS-GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCST  200 (279)
Q Consensus       122 t~v~~g-~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~  200 (279)
                      |++.++ ++.++||||++||+|+||++|+++|+++++.++||+......+....+.++++++...+.+..+||+||.|+.
T Consensus        87 ~~~~~~~g~~~~iepl~~~pvikDLvvD~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~Ci~CG~C~~  166 (252)
T 2h88_B           87 KKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCST  166 (252)
T ss_dssp             SBCCCCTTSCEEEECSTTCBEEETTEECCHHHHHHHHHTCCSCCCSCCTTTTSSCCCCCHHHHHTTTTTTTCCCCCTTGG
T ss_pred             CCHhHcCCCceEEecccCCCccccceeccHHHHHHhhhccCccccCCCCCCccccccCCHHHHHHhHhHHhchhhCcchh
Confidence            999974 4579999999999999999999999999999999998654322123347788889888999999999999999


Q ss_pred             CCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHhC
Q 023670          201 SCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR  279 (279)
Q Consensus       201 ~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~~  279 (279)
                      +||.+.++++.|+||+.++++++++.+++++...+++..+.+..++|.|++||+|+.+||+||++.++|..||+.++++
T Consensus       167 ~CP~~~~~~~~~lgP~~~~~~~r~~~~~r~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~i~~~~~i~~lr~~~~~~  245 (252)
T 2h88_B          167 SCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATY  245 (252)
T ss_dssp             GCHHHHHHTTTCCHHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCCCCHHHHHCTTCCCHHHHHHHHHHHHHHC
T ss_pred             hCCCCccCCCCcCCHHHHHHHHHHhhCCcccchHHHHHHHhcccCCCcCccccchhhhcCCCCCHHHHHHHHHHHHHHc
Confidence            9999877666799999999999988888776555666545444578999999999999999999999999999988753

>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*

Probab=100.00  E-value=1.1e-54  Score=387.45  Aligned_cols=232  Identities=29%  Similarity=0.581  Sum_probs=202.6

Q ss_pred             ceeEEEEEeeCCCCC-CCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccc
Q 023670           46 DTKKFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKI  124 (279)
Q Consensus        46 ~~~~~~i~R~~p~~~-~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v  124 (279)
                      .+++|+||||||+.| ++|||++|+|++++ |+||||||+++++++||+|+|+.+|+.|+||+|+|+|||++++||+|++
T Consensus         3 ~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~-~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i~G~~~~aC~~~~   81 (241)
T 2bs2_B            3 RMLTIRVFKYDPQSAVSKPHFQEYKIEEAP-SMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLT   81 (241)
T ss_dssp             CEEEEEEEECCTTCTTCCCEEEEEEEECCT-TCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEETTEEEEGGGCBG
T ss_pred             ceEEEEEEEeCCCCCCCCceEEEEEEeCCC-CChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEECCCeecchhCcH
Confidence            579999999999998 89999999999998 9999999999987779999999999999999999999999999999999


Q ss_pred             cCC-CCceEEeeCCCCcchhhhhhccchhhhhh-hccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCC
Q 023670          125 SPS-GSASTITPLPHMFVIKDLVVDMTNFYNQY-KSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSC  202 (279)
Q Consensus       125 ~~g-~~~~~iepl~~~~vikDLvvD~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~C  202 (279)
                      .++ +++++||||++||+++||+||+++|++++ +.+++|+..++....+..+.++++++...+.+..+||.||.|+.+|
T Consensus        82 ~~~~g~~~~ie~l~~~pvikDLvvD~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~C  161 (241)
T 2bs2_B           82 KDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAAC  161 (241)
T ss_dssp             GGCTTSEEEEECCTTSEEEETTEEECHHHHHHHHHHTTCSCCCSSCCCTTSCCCCCCHHHHHHHHHHHTCCCCCHHHHTC
T ss_pred             hHcCCCeEEEecCCCCCcceeceeeCHHHHHHHHHHhcCeeccCCCCCCccccccCCHHHHHHhhhhhhhhccCcCcccC
Confidence            975 36799999999999999999999999999 9999999875543212223348888888888899999999999999


Q ss_pred             CCcccCCCcccCHHHHHHHHHHhhcC-cchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHhC
Q 023670          203 PSYWWTSEAYLGPAALLHANRWISDS-RDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR  279 (279)
Q Consensus       203 P~~~~~~~~~~gP~~l~~a~r~~~d~-r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~~  279 (279)
                      |.+.++ .+|+||+.+++++++..++ ++....+++..+.+..++|.|++||+|+.+||++|++.++|..+|+.++++
T Consensus       162 P~~~~~-~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~i~~~~~i~~lr~~~~~~  238 (241)
T 2bs2_B          162 GTKIMR-EDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMVSV  238 (241)
T ss_dssp             HHHHHC-TTCCHHHHHHHHHHHHTCTTCCCCHHHHHHHHCSTTTGGGCCCCCHHHHHCTTCCCHHHHHHHHHHHHTTC
T ss_pred             CCCccC-CCCCCHHHHHHHHHHhhCccccccHHHHHHHHhcccCcccCcccChhhHhcCCCCChHHHHHHHHHHHHHh
Confidence            998765 3689999999999987776 654444566555345689999999999999999999999999999998763

>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*

Probab=100.00  E-value=2.2e-52  Score=371.79  Aligned_cols=230  Identities=52%  Similarity=1.045  Sum_probs=199.5

Q ss_pred             eeEEEEEeeCCCCCCCCceEEEEEeccCC-CchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc
Q 023670           47 TKKFQIYRWNPDSPSKPELKEFEINLKEC-GPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS  125 (279)
Q Consensus        47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~-g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~  125 (279)
                      +++|+||||||+.|++|||++|+|+++++ |+||||||+++++. ||+|+|+.+|+.|+||+|+|+|||+++|||.|++.
T Consensus         2 ~~~~~i~R~~~~~~~~~~~~~~~v~~~~~~~~tll~~l~~~~~~-~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~~   80 (238)
T 2wdq_B            2 RLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEK-DPSLSFRRSCREGVCGSDGLNMNGKNGLACITPIS   80 (238)
T ss_dssp             EEEEEEEECCTTTCSSCEEEEEEEECCTTCCCBHHHHHHHHHHH-CTTCCCCCSSSSSSSCTTEEEETTEEEEGGGCBGG
T ss_pred             eEEEEEEEcCCCCCCCCceEEEEeecCCCCCChHHHHHHHhccc-CCCccccccCCCCCCCCCEEEECCEEEcccccchh
Confidence            48999999999999999999999999753 79999999999964 99999999999999999999999999999999999


Q ss_pred             C-C--CCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCC
Q 023670          126 P-S--GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSC  202 (279)
Q Consensus       126 ~-g--~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~C  202 (279)
                      + |  +..++||||.+||+|+||++|++.++++++++.+|+.....+. ...+..+++++...+.+.++||+||+|+.+|
T Consensus        81 ~~g~~~~~~~ie~l~~~pvi~dlv~d~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~C  159 (238)
T 2wdq_B           81 ALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNP-PAREHLQMPEQREKLDGLYECILCACCSTSC  159 (238)
T ss_dssp             GTCCTTSCEEEECCTTSBEEETTEECCHHHHHHHHHTCCSCCCCCSSC-CSSSCCCCHHHHHTTTTTTTCCCCCTTGGGC
T ss_pred             hhccCCCCEEEeeCCCCcchhhceechHHHHHHHHhhcCccccCcCCC-CcccccCCHHHHHHHhccccccccCCchhhC
Confidence            8 4  2358999999999999999999999999999999997654331 1245677888888889999999999999999


Q ss_pred             CCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670          203 PSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK  278 (279)
Q Consensus       203 P~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~  278 (279)
                      |.+..+.++|+||+.++.+++++.++++....+++..+.+..+.|.|++||+|+.+||+||++.++|..+|+.+++
T Consensus       160 P~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~  235 (238)
T 2wdq_B          160 PSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQ  235 (238)
T ss_dssp             HHHHHCTTTSCCHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCCCCHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred             cCCccCCCCCCCHHHHHHHHHHHhCCcccchHHHHHHHhccCCCCcCcccchhhhhcCCCCCHHHHHHHHHHHHHh
Confidence            9987665568999999998888777776544455554443457899999999999999999999999999998875

>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*

Probab=100.00  E-value=4.5e-51  Score=364.34  Aligned_cols=228  Identities=31%  Similarity=0.584  Sum_probs=197.6

Q ss_pred             eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC
Q 023670           47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP  126 (279)
Q Consensus        47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~  126 (279)
                      +++|+||||||++|++|||+.|+|++++ |+||||||+++|.++||+|+|+.+|+.|+||+|+|+|||++++||.|++.+
T Consensus         5 ~~~~~i~R~~~~~~~~~~~~~~~~~~~~-~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v~G~~~~aC~~~~~~   83 (243)
T 1kf6_B            5 NLKIEVVRYNPEVDTAPHSAFYEVPYDA-TTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRD   83 (243)
T ss_dssp             EEEEEEEECCTTTCSSCEEEEEEEEECT-TCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEETTEEEEGGGCBGGG
T ss_pred             eEEEEEEEcCCCCCCCCeeEEEEEecCC-CChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEECCEEEeeeeeEHhh
Confidence            4999999999999999999999999998 999999999998666999999999999999999999999999999999998


Q ss_pred             CCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCC-CCCChhhHhhhcccccCcccCcccCCCCCc
Q 023670          127 SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKE-IPQSKKDRAKLDGMYECILCACCSTSCPSY  205 (279)
Q Consensus       127 g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~-~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~  205 (279)
                      +.+.++|+||++++++|||++|++.|+.++..+++|+......+  ..+ ..+++++...+.+.++||.||.|+.+||.+
T Consensus        84 ~~~~~~i~~l~~~~~~kdl~~dl~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~  161 (243)
T 1kf6_B           84 YTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTA--DQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQF  161 (243)
T ss_dssp             CTTCEEEECCTTSCEEETTEECCHHHHHHHHHTCCSCCSCCCCG--GGCCCCCCHHHHHTTGGGGCCCCCCHHHHHCHHH
T ss_pred             CCCcEEEEecCCCCccceeEEecHHHHHHHHhcCCeeccCcCCC--ccccccCCHHHHHHhhhhhhccccCccccccCCC
Confidence            75679999999999999999999999999999999987543211  223 567777778888999999999999999998


Q ss_pred             ccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670          206 WWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK  278 (279)
Q Consensus       206 ~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~  278 (279)
                      ..+. .|+||+++..++++..++++....+++..+....+.|.|++||+|+.+||+||++.++|..+|+.+++
T Consensus       162 ~~~~-~~~gP~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~~r~~~~~  233 (243)
T 1kf6_B          162 GLNP-EFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSK  233 (243)
T ss_dssp             HHCT-TSCCHHHHHHHHHHHTCTTCCCTHHHHHHHHSTTTGGGCCCCCHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred             cccC-CCCCHHHHHHHHHHhhCccccchHHHHHHHhccCCcccCcccCCcchhCCCCCCHHHHHHHHHHHHHH
Confidence            7654 39999999999888767665433344443433457899999999999999999999999999998764

>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}

Probab=100.00  E-value=3.9e-43  Score=343.75  Aligned_cols=194  Identities=18%  Similarity=0.329  Sum_probs=172.7

Q ss_pred             CCceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccc
Q 023670           44 NTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTK  123 (279)
Q Consensus        44 ~~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~  123 (279)
                      +.++++|+||||||+.|++||||+|+|++++ ++||||||.+|+     +|+||+        ||+|+|||+++|| .|.
T Consensus        21 ~~~~~~~~i~R~~p~~~~~p~~~~y~v~~~~-~~~vLd~L~~ik-----~l~fr~--------sCam~ING~~~la-~t~   85 (514)
T 3kwl_A           21 SVLKLHVKVFRFETNKDYNPAYESYFLEYQE-DQYLLDLLKQLK-----GVSYSE--------NIALKINQIAVFE-DAK   85 (514)
T ss_dssp             CCCEEEEEEEECBTTSCSCCEEEEEEEECCT-TCBHHHHHTTST-----TCCCCS--------SCCEEETTEEECS-CCB
T ss_pred             cceEEEEEEEEeCCCCCCCCceEEEEEeCCC-CCcHHHHHHHhh-----hCeeec--------cceEEECCEehhh-hhh
Confidence            3567999999999999999999999999988 899999999998     788887        7999999999999 677


Q ss_pred             ccC----CCCceEEeeCCCCcchhhhhhccchhhhhhhcc---ccccccCCCCCCCCCCCCCChhhHhhhcccccCcccC
Q 023670          124 ISP----SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSI---EPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCA  196 (279)
Q Consensus       124 v~~----g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~---~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG  196 (279)
                      +.+    .+++++||||++||||||||||++.|+++|+++   +||+.               +++++.++.+   |   
T Consensus        86 ~~~~~~~~~~~i~iePl~~~pvikDLvvD~~~f~~~~~~i~~~~p~~~---------------~~~~~~~~~~---~---  144 (514)
T 3kwl_A           86 VSDLVAFFSKEWVLDPLSKRYALKDLMIDEKAVLKNYEDFFKQVPYIT---------------KGEKEELEKF---I---  144 (514)
T ss_dssp             HHHHHHHHCSEEEEECSCSTTEEETTEECHHHHHGGGHHHHHTCTTSC---------------HHHHHGGGGT---G---
T ss_pred             HHHHhhccCCcEEEEECCCCcccccceeccHHHHHHHHHhhcCCCCCC---------------HHHHHHHhhc---C---
Confidence            653    256899999999999999999999999999999   99984               3566666666   3   


Q ss_pred             cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHh-hcccCccCchhhhhhhhhCCCCCChHHHHHHHHHH
Q 023670          197 CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL  275 (279)
Q Consensus       197 ~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l-~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~  275 (279)
                      +|+++||++  + ++|+||+++++++||+.|+||..+ +|++.+ +.+.++|.|++|  |+++||++|++.+.|.+||++
T Consensus       145 ~C~~aCp~~--~-~~f~Gpa~l~~a~r~~~d~rd~~~-~rl~~l~~~~~gv~~C~~~--C~~~CPk~i~~~~~I~~lr~~  218 (514)
T 3kwl_A          145 QINFINPQT--N-PKYLGDGFFLYVKWLMKRYPTERD-RLLEMISQPESGVMNFLSV--AHYLYKNDDNIDHEIYELQEI  218 (514)
T ss_dssp             GGGGTCCCC--C-TTCCCHHHHHHHHHHHHHCGGGHH-HHHHHTCCTTTSGGGCCCC--GGGBTTCCCHHHHHHHHHHHH
T ss_pred             hhhccCCCC--C-cccCcHHHHHHHHHHhcCCcchHH-HHHHHhhcCcccccccccc--ccccCCCCCCHHHHHHHHHHH
Confidence            999999984  4 679999999999999999999876 888877 455799999999  999999999999999999999


Q ss_pred             HHhC
Q 023670          276 QLKR  279 (279)
Q Consensus       276 ~~~~  279 (279)
                      ++++
T Consensus       219 ~~~~  222 (514)
T 3kwl_A          219 LTNS  222 (514)
T ss_dssp             HHTS
T ss_pred             HHHh
Confidence            8764

>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*

Probab=99.82  E-value=1.7e-20  Score=157.42  Aligned_cols=134  Identities=19%  Similarity=0.321  Sum_probs=103.4

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC--CCCceEEeeCCCCcchh
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP--SGSASTITPLPHMFVIK  143 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~--g~~~~~iepl~~~~vik  143 (279)
                      +.|++++++ ++||||+|+++.    +.+.++.+|++|+||+|+|+|||++++||.+++.+  |.+.++||||.+++++ 
T Consensus        12 ~~~~v~~~~-~~tLL~~Lr~~~----gl~g~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~v~TiEgL~~~~~~-   85 (161)
T 1rm6_C           12 RAREDLVPD-NMLLLDYLRETV----GLTGTKQGCDGGECGACTVLVDDRPRLACSTLAHQVAGKKVETVESLATQGTL-   85 (161)
T ss_dssp             EEEEEEEET-TCBHHHHHHHTT----CCTTSCCCSSSSSSCTTEEEETTEEEEGGGSBGGGGTTSEEECGGGSSBTTBC-
T ss_pred             EEEEEecCC-cCcHHHHHHHcC----CCcccccCCCCCCCCCCEEEECCcEEechHHHHHHhCCceEEEECCCCCCCcc-
Confidence            778888888 899999999974    24678999999999999999999999999999995  7677889999865431 


Q ss_pred             hhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHH
Q 023670          144 DLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANR  223 (279)
Q Consensus       144 DLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r  223 (279)
                                                         ++.+...++  ..+++||.|++.               .++.+++
T Consensus        86 -----------------------------------~p~q~a~~~--~~~~qCG~Ctpg---------------~im~a~~  113 (161)
T 1rm6_C           86 -----------------------------------SKLQAAFHE--KLGTQCGFCTPG---------------MIMASEA  113 (161)
T ss_dssp             -----------------------------------CHHHHHHHH--HTCCSSCSSHHH---------------HHHHHHH
T ss_pred             -----------------------------------CHHHHHHHH--hCCCcCCCCchH---------------HHHHHHH
Confidence                                               112222222  346999999972               5677888


Q ss_pred             HhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhC
Q 023670          224 WISDSRDEYTKERLEAIDDEFKLYRCHTILNCARAC  259 (279)
Q Consensus       224 ~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vC  259 (279)
                      ++.+.++. ++++++...+ .++++|+.+.+|.++|
T Consensus       114 ll~~~~~p-t~~~i~~~l~-gnlcRCtgy~~i~~A~  147 (161)
T 1rm6_C          114 LLRKNPSP-SRDEIKAALA-GNLCRCTGYVKIIKSV  147 (161)
T ss_dssp             HHHHCSSC-CHHHHHHHTT-TCCCSSSCSHHHHHHH
T ss_pred             HHhcCCCC-CHHHHHHHHc-CCeECCCCCHHHHHHH
Confidence            88877763 4566654433 4899999999999876

>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2

Probab=99.77  E-value=8.6e-19  Score=148.01  Aligned_cols=134  Identities=21%  Similarity=0.343  Sum_probs=99.0

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCc-cccCCCCCCccCeeEEEECCeeeccccccccC--CCCceEEeeCCCCcch
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSL-TFRRSCREGICGSCAMNIDGCNGLACLTKISP--SGSASTITPLPHMFVI  142 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl-~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~--g~~~~~iepl~~~~vi  142 (279)
                      +.|++++++ ++||||+|++..     .| .++.+|+.|+||+|+|+|||++++||.+++.+  |.+.++||||.+++.+
T Consensus        19 ~~~~~~v~~-~~tlL~~Lr~~~-----gl~g~~~~C~~G~CGaC~V~vdG~~v~sC~~~~~~~~G~~v~Tiegl~~~~~~   92 (168)
T 1t3q_A           19 KPRVFYVEP-RMHLADALREVV-----GLTGTKIGCEQGVCGSCTILIDGAPMRSCLTLAVQAEGCSIETVEGLSQGEKL   92 (168)
T ss_dssp             EEEEEEECT-TSBHHHHHHHTT-----CCTTSCCSCSSSSSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGTCCSSSC
T ss_pred             EEEEEecCC-CCcHHHHHHhcC-----CCCccccCCCCCCCCCcEEEECCCEeechhhHHHHhCCCeEEEEcCCCCcccc
Confidence            678888888 899999999962     13 37789999999999999999999999999996  7677889998764310


Q ss_pred             hhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHH
Q 023670          143 KDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAN  222 (279)
Q Consensus       143 kDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~  222 (279)
                                                          .+.+...+  ...+++||.|.               |..++.++
T Consensus        93 ------------------------------------~~~q~a~~--~~~~~qCG~C~---------------pg~i~~a~  119 (168)
T 1t3q_A           93 ------------------------------------NALQDSFR--RHHALQCGFCT---------------AGMLATAR  119 (168)
T ss_dssp             ------------------------------------CHHHHHHH--HTTCCSSCSSH---------------HHHHHHHH
T ss_pred             ------------------------------------CHHHHHHH--HhCCCcCCCch---------------HHHHHHHH
Confidence                                                01121222  23468999999               45677788


Q ss_pred             HHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCC
Q 023670          223 RWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACP  260 (279)
Q Consensus       223 r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP  260 (279)
                      +++.+.++. +.+++.... ..++++|+.|++|+++|=
T Consensus       120 ~ll~~~~~p-~~~~i~~~l-~gnlcRCt~y~~~v~A~~  155 (168)
T 1t3q_A          120 SILAENPAP-SRDEVREVM-SGNLCRCTGYETIIDAIT  155 (168)
T ss_dssp             HHHHHCSSC-CHHHHHHHG-GGSCCSSSCSHHHHHHHT
T ss_pred             HHHhcCCCC-CHHHHHHHH-cCCcccCCCchHHHHHHH
Confidence            887666543 234444332 257999999999999984

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*

Probab=99.76  E-value=2.1e-19  Score=183.67  Aligned_cols=171  Identities=14%  Similarity=0.121  Sum_probs=100.2

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCC-CCCCccCeeEEEECC-----------------------eeecccccccc
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRS-CREGICGSCAMNIDG-----------------------CNGLACLTKIS  125 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~-c~~g~CG~C~v~inG-----------------------~~~lAC~t~v~  125 (279)
                      |++++ |+|||+|++++|. .+|+|||+.. ++.|.||+|+|+|+|                       ++++||.|++.
T Consensus        11 ~~v~~-g~til~a~~~~gi-~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~~~~~aC~t~v~   88 (783)
T 3i9v_3           11 VEVPP-GTSVMDAVFHAGY-DVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASCVTAVA   88 (783)
T ss_dssp             EEECT-TCBHHHHHHHTTC-CCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCBCSSCEETTTCBCC
T ss_pred             EEeCC-CChHHHHHHHhCC-CccccCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCCCcccccCCCCC
Confidence            45557 9999999999994 6899999998 578999999999964                       56789999999


Q ss_pred             CCCCceEEeeCCC-----Ccchhhhhhccchhhh---------hhhcccccccc--------------CCCCCCCCCCCC
Q 023670          126 PSGSASTITPLPH-----MFVIKDLVVDMTNFYN---------QYKSIEPWLKR--------------KNPPPMPGKEIP  177 (279)
Q Consensus       126 ~g~~~~~iepl~~-----~~vikDLvvD~~~~~~---------~~~~~~p~l~~--------------~~~~~~~~~~~~  177 (279)
                      +|   +.|+--+.     ...+-+|++..++..+         .+|++.-.+..              ...++...+..+
T Consensus        89 ~g---m~v~t~~~~~~~~r~~~le~ll~nhp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~p~~~r~~~~k~~~~  165 (783)
T 3i9v_3           89 DG---MVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRFEFTRRHVD  165 (783)
T ss_dssp             SS---EEEESSSHHHHHHHHHHHHHHHTSCCCCTTTCTTGGGCHHHHHHHHHCSCCCC------CCCCCCCCCSCCCCCC
T ss_pred             CC---CEEEECCHHHHHHHHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHHhCCccccccccccccccccccccccccCC
Confidence            87   44443210     1122334444443322         34443211111              111110011111


Q ss_pred             CCh-hhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhh
Q 023670          178 QSK-KDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCA  256 (279)
Q Consensus       178 ~s~-~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~  256 (279)
                      .+. .......+.++||.||+|+.+||.....+  .++           ...++...     .+........|+.||+|+
T Consensus       166 ~~~~~~p~i~~d~~~CI~C~~Cv~~C~~~~~~~--~i~-----------~~~~g~~~-----~i~~~~~~~~C~~CG~Cv  227 (783)
T 3i9v_3          166 KHHPLSPFVILDRERCIHCKRCVRYFEEVPGDE--VLD-----------FIERGVHT-----FIGTMDFGLPSGFSGNIT  227 (783)
T ss_dssp             CSEEEETTEEECTTTCCCCCHHHHHHHHTTCCC--CCE-----------ECSCTTSC-----CEECSSTTCCSTTTTTHH
T ss_pred             cccCCCccEEEchhhCCCccHHHHHhhhhcCCc--eee-----------eecCCCcc-----EEccCCCCCCCccchhHH
Confidence            111 11234467899999999999997653211  111           11111100     011111235899999999


Q ss_pred             hhCCCCC
Q 023670          257 RACPKGL  263 (279)
Q Consensus       257 ~vCP~gi  263 (279)
                      ++||+|+
T Consensus       228 ~vCP~gA  234 (783)
T 3i9v_3          228 DICPVGA  234 (783)
T ss_dssp             HHCSSSS
T ss_pred             hhcccCc
Confidence            9999997

>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*

Probab=99.68  E-value=4.1e-19  Score=175.87  Aligned_cols=186  Identities=18%  Similarity=0.273  Sum_probs=105.8

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCC-C-CCccCeeEEEECCe-eeccccccccCCCCceEEeeCCC--Ccchhh
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSC-R-EGICGSCAMNIDGC-NGLACLTKISPSGSASTITPLPH--MFVIKD  144 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~-~g~CG~C~v~inG~-~~lAC~t~v~~g~~~~~iepl~~--~~vikD  144 (279)
                      |++++ |+|||+||+++|. .+|+||++.+| + .|.||+|.|+|||. .++||.|++.+|....+.++.-.  ...+.+
T Consensus        11 v~v~~-g~tiL~a~~~~gi-~ip~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~~gm~V~T~~~~~~~~r~~~le   88 (574)
T 3c8y_A           11 FNTDE-DTTILKFARDNNI-DISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDGMIINTNSDAVNEKIKSRIS   88 (574)
T ss_dssp             EEECC-CCBHHHHHHHTTC-CCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTTCEEESSCHHHHHHHHHHHH
T ss_pred             EEeCC-CCHHHHHHHHcCC-CCCcccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcccceeEEecchhhhhhHHHHHH
Confidence            45667 8999999999984 69999999997 7 89999999999998 89999999998733333332210  112334


Q ss_pred             hhhccchhhh---------hhhccccccccC--CCC-CCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcc
Q 023670          145 LVVDMTNFYN---------QYKSIEPWLKRK--NPP-PMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAY  212 (279)
Q Consensus       145 LvvD~~~~~~---------~~~~~~p~l~~~--~~~-~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~  212 (279)
                      |+++.++..+         .++.+.-.+...  ..+ + ..+....+........+.++||.||.|+.+||.....+   
T Consensus        89 lll~~h~~~C~~C~~~~~C~Lq~~a~~~Gv~~~~~f~~-~~~~~~~~~~~~~i~~d~~kCi~Cg~Cv~~CP~~~~~~---  164 (574)
T 3c8y_A           89 QLLDIHEFKCGPCNRRENCEFLKLVIKYKARASKPFLP-KDKTEYVDERSKSLTVDRTKCLLCGRCVNACGKNTETY---  164 (574)
T ss_dssp             HHHTTSCCCCTTCTTTTSCHHHHHHHHHTCCCSSCCCC-SCGGGGEECCSSSEEEEGGGCCCCCHHHHHHHHHHSCC---
T ss_pred             HHHhccCCCCCcCCCCcchHHHHHHHHhccCCCcCCCC-CccccccccCCCcceeCcccCcCCCCccchhCchhcCC---
Confidence            4444444332         233322111111  111 1 00000011111234567789999999999999632100   


Q ss_pred             cCHHHHHHHHHHhhcCcchhHHHHHH-HhhcccCccCchhhhhhhhhCCCCC-----ChHHHHHHHH
Q 023670          213 LGPAALLHANRWISDSRDEYTKERLE-AIDDEFKLYRCHTILNCARACPKGL-----NPGKQIINIK  273 (279)
Q Consensus       213 ~gP~~l~~a~r~~~d~r~~~~~erl~-~l~~~~~~~~C~~Cg~C~~vCP~gi-----~~~~~I~~lR  273 (279)
                              ++.+..++...    ++. ..........|+.||.|+.+||+|+     .+.++|..++
T Consensus       165 --------ai~~~~~g~~~----~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~~~~~v~~~l~  219 (574)
T 3c8y_A          165 --------AMKFLNKNGKT----IIGAEDEKCFDDTNCLLCGQCIIACPVAALSEKSHMDRVKNALN  219 (574)
T ss_dssp             --------CSEEEEETTEE----EEESGGGCCGGGSSCCCCCHHHHHCSSTTEEECCCHHHHHHHHH
T ss_pred             --------ceeeccCCccc----eecccccceechhhCCcchhHHHhhccCCccccccHHHHHHhhc
Confidence                    00000000000    000 0001123578999999999999985     2444454443

>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*

Probab=99.57  E-value=8.3e-15  Score=122.81  Aligned_cols=68  Identities=19%  Similarity=0.326  Sum_probs=59.4

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH  138 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~  138 (279)
                      +.|++++++ ++||||+|++..    +.+.++.+|++|.||+|+|.|||++++||.+++.  +|.+.++||+|.+
T Consensus        13 ~~~~~~v~~-~~tLLd~LR~~l----gltg~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~I~TiEgL~~   82 (163)
T 1ffv_A           13 KAQEKAVEP-RTLLIHFLREEL----NLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGLAN   82 (163)
T ss_dssp             EEEEEEECT-TCBHHHHHHHTS----CCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGTSB
T ss_pred             EEEEEecCC-CCcHHHHHHhcC----CCcccccCCCCCCCCCCEEEECCcEecchHhhHHHhCCceEEEECCCCC
Confidence            678888888 899999999853    2467889999999999999999999999999999  6767788998864

>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*

Probab=99.56  E-value=1.5e-14  Score=121.59  Aligned_cols=133  Identities=15%  Similarity=0.281  Sum_probs=91.5

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCCCcchh
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPHMFVIK  143 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~~~vik  143 (279)
                      +.|++++++ ++||||+|++..    +.+.++.+|++|.||+|+|+|||++++||.+++.  +|.+.++||+|.++   +
T Consensus        13 ~~~~~~v~~-~~tLLd~LR~~l----gl~g~k~gC~~G~CGaCtV~vdG~~v~SC~~~~~~~~G~~V~TiEgL~~~---~   84 (166)
T 1n62_A           13 HPVEALVEP-RTLLIHFIREQQ----NLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAP---D   84 (166)
T ss_dssp             EEEEEEECT-TCBHHHHHHHTS----CCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGSSCT---T
T ss_pred             EEEEEecCC-CCcHHHHHHHcC----CCCccccCCCCCCCCCCEEEECCcEEechhhhHHHhCCceEEEeCCCCCc---C
Confidence            678888888 899999999853    2467889999999999999999999999999997  67677888988642   0


Q ss_pred             hhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHH
Q 023670          144 DLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANR  223 (279)
Q Consensus       144 DLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r  223 (279)
                      +          .+                      .+.+...++  ..-.+||+|...               .++.++.
T Consensus        85 ~----------~~----------------------~pvq~a~~~--~~~~QCG~CtpG---------------~imsa~a  115 (166)
T 1n62_A           85 G----------TL----------------------SALQEGFRM--MHGLQCGYCTPG---------------MIMRSHR  115 (166)
T ss_dssp             S----------CC----------------------CHHHHHHHH--TTCCSSCSSHHH---------------HHHHHHH
T ss_pred             C----------cc----------------------CHHHHHHHH--cCCccCCccchh---------------HHHHHHH
Confidence            0          00                      111222222  224899999872               3455566


Q ss_pred             HhhcCcchhHHHHHHHhhcccCccCchhhhhhhh
Q 023670          224 WISDSRDEYTKERLEAIDDEFKLYRCHTILNCAR  257 (279)
Q Consensus       224 ~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~  257 (279)
                      ++.+..+ .+++.++... ..++.+|+...++.+
T Consensus       116 ll~~~~~-pt~~eI~~~l-~gNlCRCtgY~~I~~  147 (166)
T 1n62_A          116 LLQENPS-PTEAEIRFGI-GGNLCRCTGYQNIVK  147 (166)
T ss_dssp             HHHHCSS-CCHHHHHHHT-TTCCCSSSTTHHHHH
T ss_pred             HHHcCCC-CCHHHHHHHH-cCCccCCCCCHHHHH
Confidence            6554433 2334454332 246889988877655

>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}

Probab=99.29  E-value=1.4e-12  Score=108.90  Aligned_cols=85  Identities=15%  Similarity=0.250  Sum_probs=67.1

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC---Cc
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH---MF  140 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~---~~  140 (279)
                      +.|++++++ ++||||+|++..    +...++.+|++|.||+|+|.|||++++||.+++.  +|.+.++||+|..   +.
T Consensus        13 ~~~~v~v~p-~~tLLd~LR~~l----gltgtk~gC~~G~CGACtV~vdG~~v~sC~~~~~~~~G~~I~TiEgl~~~~~l~   87 (160)
T 3hrd_D           13 EARSIVTEP-NKRLLDLLREDF----GLTSVKEGCSEGECGACTVIFNGDPVTTCCMLAGQADESTIITLEGVAEDGKPS   87 (160)
T ss_dssp             EEEEEEECS-SSBHHHHHHTTS----CCTTSCCSSSSSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGGGTSBTTBCC
T ss_pred             EEEEEecCC-CCCHHHHHHHhc----CCCccccccCCCCCCCCEEEECCEEEEchhhhhhhhCCCceEEeCCCCCCCccC
Confidence            668888888 899999999742    2356899999999999999999999999999998  6667789999974   22


Q ss_pred             chhhhhhccchhhhh
Q 023670          141 VIKDLVVDMTNFYNQ  155 (279)
Q Consensus       141 vikDLvvD~~~~~~~  155 (279)
                      .|+.-.++.+.+.+.
T Consensus        88 pvq~af~~~~~~QCG  102 (160)
T 3hrd_D           88 LLQQCFLEAGAVQCG  102 (160)
T ss_dssp             HHHHHHHHHTCCSSC
T ss_pred             HHHHHHHHcCCCcCC
Confidence            345555565555543

>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*

Probab=99.02  E-value=1.3e-10  Score=112.19  Aligned_cols=84  Identities=18%  Similarity=0.292  Sum_probs=68.5

Q ss_pred             EEEEE-eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE----CCeeecccccccc--CCCCceEEeeCCC
Q 023670           66 KEFEI-NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI----DGCNGLACLTKIS--PSGSASTITPLPH  138 (279)
Q Consensus        66 ~~~~v-~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i----nG~~~lAC~t~v~--~g~~~~~iepl~~  138 (279)
                      +.|++ ++++ ++||||+|++++  +   ..++.+|++|.||+|+|.|    ||++++||.+++.  +|.+.++||+|.+
T Consensus        10 ~~~~~~~~~~-~~~Ll~~Lr~~~--l---~g~k~gC~~G~CGaCtV~v~~~~~g~~v~sCl~~~~~~~g~~i~TiEgl~~   83 (462)
T 2w3s_A           10 ETRRVRIEDP-TQSLLEWLRAEG--L---TGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGIAA   83 (462)
T ss_dssp             EEEEEECSCT-TCBHHHHHHHTT--C---TTSCCSCSSSSSCTTEEEEEETTEEEEEETTTCBGGGGTTCEEECGGGTSC
T ss_pred             EEEEEecCCC-CCcHHHHHHHcC--C---CccCCCCCCCCcCCcEEEEEecCCCeEEEchhhhHHHhCCCcEEEECCCCC
Confidence            78889 8877 899999999444  2   3699999999999999999    9999999999999  5667889999974


Q ss_pred             ----Ccchhhhhhccchhhhh
Q 023670          139 ----MFVIKDLVVDMTNFYNQ  155 (279)
Q Consensus       139 ----~~vikDLvvD~~~~~~~  155 (279)
                          +..++.-.++.+.+.+.
T Consensus        84 ~~~~~~~~q~a~~~~~~~QCG  104 (462)
T 2w3s_A           84 PDGRLHPVQQAMIDHHGSQCG  104 (462)
T ss_dssp             TTSCCCHHHHHHHHTTCCSSC
T ss_pred             CCCCCCHHHHHHHHhCCCCCC
Confidence                23456666677665553

>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*

Probab=98.96  E-value=2.9e-10  Score=117.84  Aligned_cols=86  Identities=20%  Similarity=0.327  Sum_probs=70.1

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC---CCCceEEeeCCC---C
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP---SGSASTITPLPH---M  139 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~---g~~~~~iepl~~---~  139 (279)
                      +.|++++++ ++||||+|++..    +.+.++.+|++|.||+|+|.|||++++||.+++..   |.+.++||+|..   +
T Consensus        11 ~~~~~~~~~-~~~ll~~Lr~~~----~l~g~k~gC~~g~CGaCtv~vdg~~~~sC~~~~~~~~~g~~i~Tiegl~~~~~~   85 (907)
T 1vlb_A           11 IEQNLFVDA-EALLSDVLRQQL----GLTGVKVGCEQGQCGACSVILDGKVVRACVTKMKRVADGAQITTIEGVGQPENL   85 (907)
T ss_dssp             EEEEEEECT-TSBHHHHHHHTT----CCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECHHHHCBTTBC
T ss_pred             EEEEEecCC-CChHHHHHHHhc----CCCeecCCCCCCCcCccEEEECCeEeechHhHHHHHcCCCcEEEECCCCCCcCc
Confidence            678889888 899999999864    36789999999999999999999999999999873   456789999974   2


Q ss_pred             cchhhhhhccchhhhhh
Q 023670          140 FVIKDLVVDMTNFYNQY  156 (279)
Q Consensus       140 ~vikDLvvD~~~~~~~~  156 (279)
                      ..++.-.++.+.+.+.|
T Consensus        86 ~~~q~a~~~~~~~qCG~  102 (907)
T 1vlb_A           86 HPLQKAWVLHGGAQCGF  102 (907)
T ss_dssp             CHHHHHHHHHTCCSSCT
T ss_pred             CHHHHHHHHcCCCCCCc
Confidence            34566666776666543

>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*

Probab=98.95  E-value=3.3e-10  Score=94.62  Aligned_cols=82  Identities=18%  Similarity=0.296  Sum_probs=64.9

Q ss_pred             EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC----------Ceeecccccccc--CCCCceEEeeC
Q 023670           69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID----------GCNGLACLTKIS--PSGSASTITPL  136 (279)
Q Consensus        69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in----------G~~~lAC~t~v~--~g~~~~~iepl  136 (279)
                      .+++++ +++|||+||+...    -...+.+|.+|.||+|+|.||          |+++.||.+++.  +|.+.++||+|
T Consensus        16 ~~~~~p-~~~Ll~~LR~~lg----ltGtK~GC~~G~CGACTVlvd~~~~~~~~~~g~~v~SCl~~a~~~~G~~I~TiEGL   90 (164)
T 3nvw_A           16 EKNADP-ETTLLAYLRRKLG----LRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEGI   90 (164)
T ss_dssp             ETTCCT-TCBHHHHHHHTSC----CTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTCEEECGGGT
T ss_pred             EecCCC-CCCHHHHHHHHcC----CCCcCCCcCCCCCCCCEEEEccccccccccCCcEEehhhhhHHHhCCcceEEeccc
Confidence            567777 8999999998531    356889999999999999999          999999999998  67778899999


Q ss_pred             CC----Ccchhhhhhccchhhhh
Q 023670          137 PH----MFVIKDLVVDMTNFYNQ  155 (279)
Q Consensus       137 ~~----~~vikDLvvD~~~~~~~  155 (279)
                      ..    +..|+.-.++.+.+.+.
T Consensus        91 ~~~~~~lhpvQ~af~~~~~~QCG  113 (164)
T 3nvw_A           91 GSTKTRLHPVQERIAKSHGSQCG  113 (164)
T ss_dssp             CCTTSCCCHHHHHHHHTTCCSSC
T ss_pred             CCCCCccCHHHHHHHHcCCCcCc
Confidence            64    23355556666665553

>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1

Probab=98.87  E-value=8.2e-10  Score=114.44  Aligned_cols=86  Identities=17%  Similarity=0.344  Sum_probs=68.3

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC---CCCceEEeeCCC---C
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP---SGSASTITPLPH---M  139 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~---g~~~~~iepl~~---~  139 (279)
                      +.|++++++ ++||||+|++..    +...++.+|++|.||+|+|.|||++++||.+++..   |.+.++||+|.+   +
T Consensus        11 ~~~~~~~~~-~~~ll~~Lr~~~----~l~g~k~gC~~G~CGaCtv~vdg~~v~sC~~~~~~~~~g~~i~TiEgl~~~~~~   85 (907)
T 1dgj_A           11 MARRLLVSP-NDLLVDVLRSQL----QLTSVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGIGAPDCL   85 (907)
T ss_dssp             BCCEEEECT-TCBHHHHHHHTT----CCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECGGGTCBTTBC
T ss_pred             EEEEEecCC-CCcHHHHHHHhc----CCCccCCCCCCCCcCceEEEECCeEeehhHhHHHHHcCCCcEEEECCCCCCccc
Confidence            456678888 899999999852    35789999999999999999999999999999973   456788999974   2


Q ss_pred             cchhhhhhccchhhhhh
Q 023670          140 FVIKDLVVDMTNFYNQY  156 (279)
Q Consensus       140 ~vikDLvvD~~~~~~~~  156 (279)
                      ..++.-.++.+.+.+.|
T Consensus        86 ~~~q~a~~~~~~~qCG~  102 (907)
T 1dgj_A           86 HPLQHAWIQHGAAQCGF  102 (907)
T ss_dssp             CHHHHHHHHHTCCSSCT
T ss_pred             CHHHHHHHHcCCCCCCc
Confidence            34566666766655543

>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}

Probab=98.63  E-value=4.9e-09  Score=107.22  Aligned_cols=74  Identities=18%  Similarity=0.301  Sum_probs=52.5

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCCh
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNP  265 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~  265 (279)
                      ..+.++|+.||.|+.+||.+..       +..+   ++....++..    .   +..  ..+.|+.||+|..+||+++++
T Consensus       411 ~~~~~~Ci~CG~C~~~CP~~~~-------~~~i---l~~~~~G~~~----~---~~~--~~~~Ci~Cg~C~~vCP~ga~~  471 (807)
T 3cf4_A          411 VNMVAKCADCGACLLACPEEID-------IPEA---MGFAKKGDFS----Y---FEE--IHDTCIGCRRCEQVCKKEIPI  471 (807)
T ss_dssp             HHHHHHCCCCCHHHHHCTTCCC-------HHHH---HHHHHTTCTH----H---HHH--HHHHCCCCCHHHHHCTTCCCH
T ss_pred             HHhHHhCCCCCchhhhCCCCCc-------hHHH---HHHHHcCChh----h---hhh--chhhccchhhHHHhCCCCCCh
Confidence            3467899999999999998741       1122   2222223211    1   111  257899999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 023670          266 GKQIINIKQLQLK  278 (279)
Q Consensus       266 ~~~I~~lR~~~~~  278 (279)
                      .+++.++|+.+.+
T Consensus       472 ~~~i~~~r~~l~~  484 (807)
T 3cf4_A          472 LNVIEKIAQKQIA  484 (807)
T ss_dssp             HHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1

Probab=98.60  E-value=6.2e-08  Score=73.20  Aligned_cols=57  Identities=30%  Similarity=0.515  Sum_probs=44.6

Q ss_pred             EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC-Ce-----------------eeccccccccCCCC
Q 023670           68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID-GC-----------------NGLACLTKISPSGS  129 (279)
Q Consensus        68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in-G~-----------------~~lAC~t~v~~g~~  129 (279)
                      .+|++++ |+||||||++.|. .     ...+|+.|.||+|.|+|+ |.                 .+|||.+.+..   
T Consensus        13 ~~~~~~~-g~tlL~a~~~~gi-~-----i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~~~~---   82 (95)
T 1frr_A           13 FTLDVPE-GTTILDAAEEAGY-D-----LPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPES---   82 (95)
T ss_dssp             EEEEECT-TCCHHHHHHHTTC-C-----CCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEESS---
T ss_pred             EEEEeCC-CCcHHHHHHHcCC-C-----CCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECEECC---
Confidence            4566677 8999999999883 2     446789999999999997 73                 47899999874   


Q ss_pred             ceEEe
Q 023670          130 ASTIT  134 (279)
Q Consensus       130 ~~~ie  134 (279)
                      .++|+
T Consensus        83 ~~~v~   87 (95)
T 1frr_A           83 DLVIE   87 (95)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            25554

>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1

Probab=98.57  E-value=8.8e-08  Score=72.90  Aligned_cols=57  Identities=28%  Similarity=0.458  Sum_probs=44.3

Q ss_pred             EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCCC
Q 023670           68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGS  129 (279)
Q Consensus        68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~~  129 (279)
                      .+|++++ |.||||||++.|. .     ...+|+.|.||+|.|+| +|.                 .+|||.+.+..+  
T Consensus        16 ~~~~~~~-g~tlL~a~~~~gi-~-----i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~~~~~d--   86 (98)
T 1frd_A           16 TTIEIDE-ETTILDGAEENGI-E-----LPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSN--   86 (98)
T ss_dssp             EEEEEET-TSCHHHHHHHTTC-C-----CCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGCEESSS--
T ss_pred             EEEEeCC-CCcHHHHHHHcCC-C-----cccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeECEECCC--
Confidence            3456667 8999999999883 2     44678999999999998 775                 578999998742  


Q ss_pred             ceEEe
Q 023670          130 ASTIT  134 (279)
Q Consensus       130 ~~~ie  134 (279)
                       ++|+
T Consensus        87 -~~v~   90 (98)
T 1frd_A           87 -CTIK   90 (98)
T ss_dssp             -EEEE
T ss_pred             -EEEE
Confidence             5555

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2

Probab=98.51  E-value=2.1e-07  Score=70.80  Aligned_cols=54  Identities=24%  Similarity=0.405  Sum_probs=42.0

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-------------------eecccccccc
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-------------------NGLACLTKIS  125 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-------------------~~lAC~t~v~  125 (279)
                      ..++|++++ |.||||||++.|.      ....+|+.|.||+|.|+| +|.                   .+|||.+.+.
T Consensus        15 ~~~~~~~~~-g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~LaCq~~~~   87 (98)
T 1jq4_A           15 ESLRFECRS-DEDVITAALRQNI------FLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCRTYPK   87 (98)
T ss_dssp             EEEEEEEES-CCTHHHHHHHHTC------CCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTTTCCSS
T ss_pred             CcEEEEeCC-CChHHHHHHHcCC------CCcCCCCCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEEEeeCEEC
Confidence            345566667 8999999999873      245779999999999997 774                   3678888886


Q ss_pred             C
Q 023670          126 P  126 (279)
Q Consensus       126 ~  126 (279)
                      .
T Consensus        88 ~   88 (98)
T 1jq4_A           88 T   88 (98)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1

Probab=98.50  E-value=1.8e-07  Score=70.72  Aligned_cols=58  Identities=33%  Similarity=0.476  Sum_probs=44.8

Q ss_pred             EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCC
Q 023670           67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSG  128 (279)
Q Consensus        67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~  128 (279)
                      .++|++++ |.||||||++.|.      ....+|+.|.||+|.|+| +|.                 .+|||.+.+..  
T Consensus        11 ~~~~~~~~-g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~--   81 (94)
T 1awd_A           11 EETIECPE-DTYILDAAEEAGL------DLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTS--   81 (94)
T ss_dssp             EEEEECCT-TSCHHHHHHHTTC------CCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESS--
T ss_pred             cEEEEECC-CCcHHHHHHHcCC------CCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECEECC--
Confidence            35677777 8999999999873      245789999999999998 774                 36788888874  


Q ss_pred             CceEEe
Q 023670          129 SASTIT  134 (279)
Q Consensus       129 ~~~~ie  134 (279)
                       .++|+
T Consensus        82 -d~~i~   86 (94)
T 1awd_A           82 -DVTIL   86 (94)
T ss_dssp             -CEEEE
T ss_pred             -CEEEE
Confidence             25554

>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A

Probab=98.48  E-value=1.9e-07  Score=70.98  Aligned_cols=57  Identities=30%  Similarity=0.444  Sum_probs=44.2

Q ss_pred             EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCCC
Q 023670           68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGS  129 (279)
Q Consensus        68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~~  129 (279)
                      ++|++++ |.||||||++.|.      ....+|+.|.||+|.|+| +|.                 .+|||.+.+..   
T Consensus        14 ~~~~~~~-g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~---   83 (97)
T 1a70_A           14 VEFQCPD-DVYILDAAEEEGI------DLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVS---   83 (97)
T ss_dssp             EEEEEET-TSCHHHHHHHTTC------CCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCEESS---
T ss_pred             EEEEeCC-CCcHHHHHHHcCC------CcccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeECEECC---
Confidence            5566677 8999999999873      245789999999999997 774                 36799988874   


Q ss_pred             ceEEe
Q 023670          130 ASTIT  134 (279)
Q Consensus       130 ~~~ie  134 (279)
                      .++|+
T Consensus        84 d~~v~   88 (97)
T 1a70_A           84 DVTIE   88 (97)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            25555

>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1

Probab=98.48  E-value=2e-07  Score=71.05  Aligned_cols=57  Identities=28%  Similarity=0.465  Sum_probs=44.0

Q ss_pred             EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCCC
Q 023670           68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGS  129 (279)
Q Consensus        68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~~  129 (279)
                      ++|++++ |.||||||++.|.      ....+|+.|.||+|.|+| +|.                 .+|||.+.+..   
T Consensus        14 ~~~~~~~-g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~---   83 (98)
T 1iue_A           14 KKIECNE-DEYILDASERQNV------ELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYPKS---   83 (98)
T ss_dssp             EEEEEET-TSCHHHHHHHTTC------CCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESS---
T ss_pred             EEEEeCC-CCcHHHHHHHcCC------CCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeECEECC---
Confidence            4566667 8999999999873      245789999999999996 774                 36899988874   


Q ss_pred             ceEEe
Q 023670          130 ASTIT  134 (279)
Q Consensus       130 ~~~ie  134 (279)
                      .++|+
T Consensus        84 d~~i~   88 (98)
T 1iue_A           84 DCVIE   88 (98)
T ss_dssp             CEEEE
T ss_pred             CeEEE
Confidence            35555

>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...

Probab=98.43  E-value=3.3e-07  Score=69.79  Aligned_cols=57  Identities=28%  Similarity=0.521  Sum_probs=43.4

Q ss_pred             EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCCC
Q 023670           68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGS  129 (279)
Q Consensus        68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~~  129 (279)
                      .+|++++ |.||||||++.|.      ....+|+.|.||+|.|+| +|.                 .+|||.+.+..+  
T Consensus        16 ~~~~~~~-g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~d--   86 (98)
T 1czp_A           16 HEIEVPD-DEYILDAAEEQGY------DLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSD--   86 (98)
T ss_dssp             EEEEEET-TSCHHHHHHHTTC------CCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESSC--
T ss_pred             EEEEeCC-CCCHHHHHHHcCC------CccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeeeCEECCC--
Confidence            3456667 8999999999873      245789999999999997 674                 367898888742  


Q ss_pred             ceEEe
Q 023670          130 ASTIT  134 (279)
Q Consensus       130 ~~~ie  134 (279)
                       ++|+
T Consensus        87 -~~v~   90 (98)
T 1czp_A           87 -VVIQ   90 (98)
T ss_dssp             -EEEE
T ss_pred             -EEEE
Confidence             5554

>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1

Probab=98.31  E-value=8.4e-07  Score=66.87  Aligned_cols=57  Identities=21%  Similarity=0.482  Sum_probs=43.0

Q ss_pred             EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCC
Q 023670           67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSG  128 (279)
Q Consensus        67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~  128 (279)
                      .++|++++ |.||||+|++.| .      ...+|+.|.||+|.|.| +|.                 .+|||.+.+..  
T Consensus        12 ~~~~~~~~-g~tlL~a~~~~g-~------i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~~~~--   81 (93)
T 1wri_A           12 DITFDVEP-GERLIDIGSEKA-D------LPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPES--   81 (93)
T ss_dssp             EEEEEECT-TSCHHHHHHHHS-C------CCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEESS--
T ss_pred             eEEEEECC-CCcHHHHHHHCc-C------CCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCEECC--
Confidence            35667777 899999999987 3      34678999999999997 673                 25688877763  


Q ss_pred             CceEEe
Q 023670          129 SASTIT  134 (279)
Q Consensus       129 ~~~~ie  134 (279)
                       .++|+
T Consensus        82 -d~~v~   86 (93)
T 1wri_A           82 -DVVIE   86 (93)
T ss_dssp             -CEEEE
T ss_pred             -CEEEE
Confidence             25554

>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*

Probab=98.21  E-value=2.6e-06  Score=65.85  Aligned_cols=56  Identities=18%  Similarity=0.334  Sum_probs=39.6

Q ss_pred             CceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCC-CccCeeEEEEC
Q 023670           45 TDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE-GICGSCAMNID  113 (279)
Q Consensus        45 ~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~-g~CG~C~v~in  113 (279)
                      .+|++|.+.  +|+.      +.++|++++ |.|||+||++.|. .+|++   .+|+. |.||+|.|.|.
T Consensus         4 ~~m~~V~~~--~~~g------~~~~v~~~~-g~tLL~aa~~~gi-~i~~~---~~Cgg~G~CgtC~v~v~   60 (108)
T 2bt6_A            4 GDKITVHFI--NRDG------ETLTTKGKI-GDSLLDVVVQNNL-DIDGF---GACEGTLACSTCHLIFE   60 (108)
T ss_dssp             -CEEEEEEE--CTTS------CEEEEEEET-TCBHHHHHHHTTC-CCTTT---TTTSSSSSBSTTEEECC
T ss_pred             CceEEEEEE--CCCC------CEEEEEECC-CChHHHHHHHcCC-CCCcc---cCCCCCcCcCCCEEEEC
Confidence            346666553  3332      345677777 9999999999984 34433   78976 99999999986

>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1

Probab=98.20  E-value=1.9e-06  Score=64.88  Aligned_cols=54  Identities=19%  Similarity=0.453  Sum_probs=41.6

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC-Ce------------------eecccccccc
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID-GC------------------NGLACLTKIS  125 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in-G~------------------~~lAC~t~v~  125 (279)
                      +.++|++++ |.||||+|++.+. .    ....+|+ .|.||+|.|.|. |.                  .+|||.+.+.
T Consensus        10 ~~~~~~~~~-g~tll~a~~~~gi-~----gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~~~~~g~rLaCq~~~~   83 (93)
T 1l5p_A           10 VKKQLKFED-DQTLFTVLTEAGL-M----SADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLEDQPANARLACAITLS   83 (93)
T ss_dssp             EEEEEECCT-TEEHHHHHHTTTS-S----CCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHTTSCTTEEEGGGCEEC
T ss_pred             cEEEEEECC-CChHHHHHHHcCC-C----cCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhcCCCCCcEEeeECEEC
Confidence            556778888 9999999999873 1    1457798 899999999984 42                  2568887776

>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}

Probab=98.17  E-value=3.6e-06  Score=64.47  Aligned_cols=41  Identities=24%  Similarity=0.467  Sum_probs=32.8

Q ss_pred             EEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEECC
Q 023670           67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG  114 (279)
Q Consensus        67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~inG  114 (279)
                      .++|++++ |.||||||++.|..      ...+|+ .|.||+|.|.|.+
T Consensus        15 ~~~~~~~~-g~tlL~a~~~~gi~------i~~~C~g~G~Cg~C~v~v~~   56 (103)
T 2wlb_A           15 EIMIEGNE-GDSILDLAHANNID------LEGACEGSVACSTCHVIVDP   56 (103)
T ss_dssp             EEEEEECT-TCBHHHHHHHTTCC------CCCTTTTSSCCSTTEEEECH
T ss_pred             EEEEEECC-CCHHHHHHHHcCCC------cCcCCCCCCCcCCCEEEECC
Confidence            35567777 89999999998732      346798 7999999999864

>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}

Probab=98.08  E-value=6.7e-06  Score=63.68  Aligned_cols=41  Identities=15%  Similarity=0.292  Sum_probs=32.3

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCC-CccCeeEEEEC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE-GICGSCAMNID  113 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~-g~CG~C~v~in  113 (279)
                      +.++|++++ |.|||+|+++.|. ..     ..+|+. |.||+|.|.|.
T Consensus        16 ~~~~~~~~~-g~tlL~aa~~~gi-~i-----~~~C~g~G~CgtC~v~v~   57 (109)
T 2y5c_A           16 QRIPVSGRV-GDNVLHLAQRHGV-DL-----EGACEASLACSTCHVYVS   57 (109)
T ss_dssp             CEEEEEEET-TCBHHHHHHHTTC-CC-----CCTTSSSSSCCTTEEEEC
T ss_pred             CEEEEEECC-CCcHHHHHHHcCC-CC-----CcCCCCCcCcCccEEEEC
Confidence            345667777 8999999999884 23     367977 99999999974

>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*

Probab=98.04  E-value=6e-07  Score=74.91  Aligned_cols=107  Identities=20%  Similarity=0.336  Sum_probs=37.6

Q ss_pred             cchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCC-cccCHHHH
Q 023670          140 FVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSE-AYLGPAAL  218 (279)
Q Consensus       140 ~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~-~~~gP~~l  218 (279)
                      .++++|.++..+++.+...+. |-......+...+..   +.......+.++||.||.|+.+||.....-. ....+.  
T Consensus         5 ~~~~~l~~~~~~~~~~~~t~~-yp~~~~~~~~~~~g~---~~~~~~~~d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~--   78 (182)
T 3i9v_9            5 ALAQSLGITLKYLFSKPVTVP-YPDAPVALKPRFHGR---HVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPAENDPE--   78 (182)
T ss_dssp             ----------------------CCSSCEECCTTCCCS---EEECBCTTSCBSCCCCCHHHHHCTTCCEEEEEECCCSS--
T ss_pred             HHHHHHHHHHHHHcCCCcceE-CCCCCCCCCcccCCe---EeeccCCCCCccCcccccchhhCCcccEEeeccccccc--
Confidence            467888888888877543332 111000000000000   0000111246799999999999997532100 000000  


Q ss_pred             HHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          219 LHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       219 ~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                          .....+...      . .......+.|+.||.|+.+||.++
T Consensus        79 ----~~~~~~~~~------~-~~~~~~~~~C~~C~~C~~~CP~~A  112 (182)
T 3i9v_9           79 ----NPVSAGERY------A-KVYEINMLRCIFCGLCEEACPTGA  112 (182)
T ss_dssp             ----SCSSSSSCE------E-EEEEEETTTCCCCCHHHHHCSSSC
T ss_pred             ----ccccccccc------c-ceeecCCCcCcChhChhhhCCccc
Confidence                000000000      0 000124678999999999999985

>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0

Probab=98.00  E-value=1.5e-05  Score=61.35  Aligned_cols=43  Identities=19%  Similarity=0.326  Sum_probs=34.1

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEECC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG  114 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~inG  114 (279)
                      +.++|++.+ |.|||+||++.+...     ...+|+ .|.||+|.|.|..
T Consensus        11 ~~~~~~~~~-g~tll~a~~~~gi~~-----i~~~C~G~G~CgtC~v~v~~   54 (104)
T 3lxf_A           11 TRTEIQAEP-GLSLMEALRDAGIDE-----LLALCGGCCSCATCHVLVAP   54 (104)
T ss_dssp             CEEEEECCT-TSBHHHHHHHTTCTT-----CCCTTCSSSSCSTTEEEECG
T ss_pred             CEEEEEECC-CChHHHHHHHcCCCC-----CCcCCCCCCCCCCCEEEECC
Confidence            466788888 999999999987421     336898 8999999999753

>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A

Probab=97.99  E-value=1e-05  Score=64.79  Aligned_cols=39  Identities=31%  Similarity=0.638  Sum_probs=31.6

Q ss_pred             EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670           69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG  114 (279)
Q Consensus        69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG  114 (279)
                      ++++++ |.|||+||++.|. .     ...+|+.|.||+|.|.| +|
T Consensus        39 ~v~v~~-g~tlL~aa~~~Gi-~-----i~~~C~~G~CgtC~v~v~~G   78 (128)
T 1doi_A           39 SLEVNE-GEYILEAAEAQGY-D-----WPFSCRAGACANCAAIVLEG   78 (128)
T ss_dssp             EEECCT-TSCHHHHHHHTTC-C-----CCCSSSSSSSSTTEEEEEES
T ss_pred             EEEECC-CCcHHHHHHHcCC-C-----CccCCCccCCCCCEeEEecC
Confidence            456667 8999999999883 2     44678999999999997 55

>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}

Probab=97.97  E-value=9.2e-06  Score=63.25  Aligned_cols=39  Identities=18%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             EEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC-C
Q 023670           69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID-G  114 (279)
Q Consensus        69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in-G  114 (279)
                      +|++++ |.||||||++.|. .+     ..+|+ .|.||+|.|+|. |
T Consensus        18 ~v~~~~-g~tlL~aa~~~Gi-~i-----~~~C~g~G~CgtC~v~v~~G   58 (113)
T 3ah7_A           18 TVEVKP-GTNILELAHDHHI-EM-----ESACGGVKACTTCHCIVRKG   58 (113)
T ss_dssp             EEECCT-TCBHHHHHHHTTC-CC-----CCTTCSSSSCSTTEEEEEES
T ss_pred             EEEECC-CCcHHHHHHHcCC-CC-----CcCCCCCCCcCCCEEEEcCC
Confidence            456667 8999999999984 23     36797 699999999974 5

>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A

Probab=97.96  E-value=1.2e-05  Score=61.90  Aligned_cols=41  Identities=15%  Similarity=0.443  Sum_probs=32.1

Q ss_pred             EEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC
Q 023670           67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID  113 (279)
Q Consensus        67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in  113 (279)
                      ..+|++++ |.||||||++.|. .    ....+|+ .|.||+|.|.|.
T Consensus        12 ~~~~~~~~-g~tlLeaa~~~gi-~----~i~~~C~g~G~CgtC~v~v~   53 (106)
T 1xlq_A           12 RRELDVAD-GVSLMQAAVSNGI-Y----DIVGDCGGSASCATCHVYVN   53 (106)
T ss_dssp             EEEEECCT-TCBHHHHHHHTTC-T----TSCCTTCSSSSSCTTEEEEC
T ss_pred             EEEEEECC-CCcHHHHHHHcCC-C----CCCcCCCCCcccCcCEEEEC
Confidence            45677777 8999999999984 2    1346785 799999999974

>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*

Probab=97.95  E-value=4.2e-06  Score=89.77  Aligned_cols=85  Identities=18%  Similarity=0.279  Sum_probs=65.9

Q ss_pred             EEEEE-eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC----------Ceeecccccccc--CCCCceE
Q 023670           66 KEFEI-NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID----------GCNGLACLTKIS--PSGSAST  132 (279)
Q Consensus        66 ~~~~v-~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in----------G~~~lAC~t~v~--~g~~~~~  132 (279)
                      +.+++ ++++ .+||||+||+...    -...+.+|.+|.||+|+|.||          |+++.||.+++.  +|.+.+|
T Consensus        13 ~~~~~~~~~p-~~~ll~~LR~~~~----ltgtk~gC~~g~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T   87 (1332)
T 3unc_A           13 KKVVEKNADP-ETTLLAYLRRKLG----LRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTT   87 (1332)
T ss_dssp             EEEEETTCCT-TCBHHHHHHHTSC----CTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTCEEEC
T ss_pred             EEEEeecCCC-CCCHHHHHhhhcC----CCCcCCCcCCCCCCCcEEEEecccccccccCCeEeehHHhhHHHhCCCEEEE
Confidence            45665 6777 7999999998431    245788999999999999995          889999999998  6778889


Q ss_pred             EeeCCC----Ccchhhhhhccchhhhh
Q 023670          133 ITPLPH----MFVIKDLVVDMTNFYNQ  155 (279)
Q Consensus       133 iepl~~----~~vikDLvvD~~~~~~~  155 (279)
                      ||.|.+    +..|+.-.++.+.+.+.
T Consensus        88 iEgl~~~~~~~hpvq~a~~~~~~~QCG  114 (1332)
T 3unc_A           88 VEGIGSTKTRLHPVQERIAKSHGSQCG  114 (1332)
T ss_dssp             GGGTCCTTSCCCHHHHHHHHTTCCSSC
T ss_pred             eccccCCCCCcCHHHHHHHHhCCCCCC
Confidence            999964    23456666777665553

>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1

Probab=97.95  E-value=1e-05  Score=62.85  Aligned_cols=38  Identities=18%  Similarity=0.471  Sum_probs=30.4

Q ss_pred             EEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEEC
Q 023670           69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNID  113 (279)
Q Consensus        69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~in  113 (279)
                      +|++++ |.||||||++.|. .     ...+| +.|.||+|.|.|.
T Consensus        18 ~~~~~~-g~tlL~a~~~~gi-~-----i~~~C~~~G~Cg~C~v~v~   56 (111)
T 1i7h_A           18 VLEANS-GETILDAALRNGI-E-----IEHACEKSCACTTCHCIVR   56 (111)
T ss_dssp             EEECCT-TCBHHHHHHHTTC-C-----CCCTTSSSSCCSTTEEEEE
T ss_pred             EEEeCC-CCcHHHHHHHcCC-C-----CcccCCCCCcCCCCEEEEc
Confidence            456667 8999999999873 2     34679 5899999999975

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=97.94  E-value=1.5e-05  Score=72.88  Aligned_cols=53  Identities=28%  Similarity=0.465  Sum_probs=42.4

Q ss_pred             EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCee---------------------eccccccc
Q 023670           67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGCN---------------------GLACLTKI  124 (279)
Q Consensus        67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~~---------------------~lAC~t~v  124 (279)
                      .++|++++ |.|||||++++|. .     ...+|+.|.||+|.|+| +|..                     +|||.+.+
T Consensus        15 ~~~~~~~~-g~tll~a~~~~gi-~-----i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~LaCq~~~   87 (338)
T 1krh_A           15 TRFICIAQ-GETLSDAAYRQQI-N-----IPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRP   87 (338)
T ss_dssp             EEEEEECT-TCCHHHHHHHTTC-C-----CSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEEETTTCEE
T ss_pred             cEEEEeCC-CCcHHHHHHHcCC-C-----cccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeEEEEeCEE
Confidence            34566777 8999999999984 2     34678999999999998 7742                     68999998


Q ss_pred             cC
Q 023670          125 SP  126 (279)
Q Consensus       125 ~~  126 (279)
                      ..
T Consensus        88 ~~   89 (338)
T 1krh_A           88 TS   89 (338)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1

Probab=97.89  E-value=7.8e-06  Score=62.77  Aligned_cols=41  Identities=12%  Similarity=0.521  Sum_probs=32.0

Q ss_pred             EEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEECC
Q 023670           68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG  114 (279)
Q Consensus        68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~inG  114 (279)
                      .+|++++ |.|||+||++.|..     ....+|+ .|.||+|.|.|.+
T Consensus        13 ~~~~~~~-g~tlL~aa~~~gi~-----~i~~~C~g~G~CgtC~v~v~~   54 (105)
T 1b9r_A           13 YAVDAQD-GQSLMEVATQNGVP-----GIVAECGGSCVCATCRIEIED   54 (105)
T ss_dssp             EEEECCT-TCCTTHHHHHHTCC-----CCCCSSTTSSCCCCCCCEECT
T ss_pred             EEEEECC-CChHHHHHHHcCCC-----CcCcCCCCCCCcCcCEEEECC
Confidence            4567777 89999999999842     1346798 6999999999853

>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}

Probab=97.86  E-value=3.6e-05  Score=61.40  Aligned_cols=56  Identities=18%  Similarity=0.412  Sum_probs=39.5

Q ss_pred             CCceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC
Q 023670           44 NTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID  113 (279)
Q Consensus        44 ~~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in  113 (279)
                      ...|.+|.+.  +|+.      +..+|++.+ |.||||||++.+..-     ...+|+ .|.||+|.|.|.
T Consensus        18 ~~~M~~Vt~~--~~~G------~~~~v~~~~-G~tLL~aa~~~gi~g-----i~~~C~G~G~CgtC~v~v~   74 (126)
T 3hui_A           18 GSHMAKINFV--DHTG------ETRTVEVEE-GATVMEAAIRNAIPG-----VEAECGGACACATCHVYVD   74 (126)
T ss_dssp             TCSEEEEEEE--CTTS------CEEEEEEET-TSBHHHHHHTTTCTT-----CCCTTSSSSCCSTTEEEEC
T ss_pred             CCCceEEEEE--eCCC------CEEEEEECC-CCcHHHHHHHcCCCC-----CccCCCCCCCCCCCEEEEC
Confidence            3456666553  3432      345677777 899999999987420     336797 799999999975

>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A

Probab=97.85  E-value=1.6e-05  Score=61.04  Aligned_cols=41  Identities=22%  Similarity=0.414  Sum_probs=32.1

Q ss_pred             EEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC
Q 023670           67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID  113 (279)
Q Consensus        67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in  113 (279)
                      ..+|++++ |.||||||++.|. .    ....+|+ .|.||+|.|.|.
T Consensus        12 ~~~~~~~~-g~tlL~aa~~~gi-~----~i~~~C~g~G~CgtC~v~v~   53 (106)
T 1uwm_A           12 RHEVEAKP-GLTVMEAARDNGV-P----GIDADCGGACACSTCHAYVD   53 (106)
T ss_dssp             EEEEECCT-TSBHHHHHHTTTC-T----TCCCTTSSSSSSCTTEEEEC
T ss_pred             EEEEEECC-CCcHHHHHHHcCC-C----CcccCCCCCCCcCcCEEEEC
Confidence            45677777 8999999999884 2    1346795 799999999975

>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*

Probab=97.61  E-value=2.9e-06  Score=61.07  Aligned_cols=56  Identities=23%  Similarity=0.470  Sum_probs=34.5

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +..+|+.||.|+.+||.......+.              ++....      .+........|+.||.|+.+||.++
T Consensus         6 ~~~~C~~Cg~C~~~CP~~a~~~~~~--------------~~~~~~------~~~~~~~~~~C~~Cg~C~~~CP~~a   61 (80)
T 1jb0_C            6 IYDTCIGCTQCVRACPTDVLEMVPW--------------DGCKAG------QIASSPRTEDCVGCKRCETACPTDF   61 (80)
T ss_dssp             EETTCCCCCHHHHHCTTCCCEEEEC--------------SSSTTS------EEEECTTGGGCCCCCHHHHHCCSSS
T ss_pred             cCCcCcChhHHHHHCCccccccccc--------------cccccc------ccccCCCCCcCcCcCChhhhCCCCc
Confidence            4578999999999999643210000              000000      0101123578999999999999985

>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A

Probab=97.58  E-value=1e-05  Score=61.21  Aligned_cols=59  Identities=17%  Similarity=0.294  Sum_probs=35.5

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+..+|+.||.|+.+||.......+..              +.....     ..........|+.||.|+.+||+++
T Consensus        39 ~id~~~C~~Cg~C~~~CP~~ai~~~~~~--------------~~~~~~-----~~~~~~~~~~C~~Cg~C~~~CP~~A   97 (103)
T 1xer_A           39 GVDFDLCIADGSCINACPVNVFQWYDTP--------------GHPASE-----KKADPVNEQACIFCMACVNVCPVAA   97 (103)
T ss_dssp             EEETTTCCCCCHHHHHCTTCCCEEEECT--------------TCSSCS-----EEEECTTGGGCCCCCHHHHHCTTCC
T ss_pred             EEehhhCCChhhHHHHcCccCeeccccc--------------Cccccc-----cceeecCcccccChhhHHHhccccc
Confidence            3456789999999999996432100000              000000     0000124578999999999999985

>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A

Probab=97.58  E-value=2.6e-05  Score=52.19  Aligned_cols=47  Identities=30%  Similarity=0.609  Sum_probs=32.9

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+|+.||.|+.+||......                .++.          .  ......|+.||.|..+||+++
T Consensus         5 ~~~C~~C~~C~~~CP~~ai~~----------------~~~~----------~--~~~~~~C~~C~~C~~~CP~~a   51 (55)
T 2fdn_A            5 NEACISCGACEPECPVNAISS----------------GDDR----------Y--VIDADTCIDCGACAGVCPVDA   51 (55)
T ss_dssp             CTTCCCCCTTGGGCTTCCEEC----------------CSSS----------C--EECTTTCCCCCHHHHTCTTCC
T ss_pred             cccCcChhhHHHHCCccccCc----------------CCCE----------E--EeccccCcChhChHHHccccc
Confidence            467999999999999643210                0000          0  113567999999999999985

>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1

Probab=97.52  E-value=9.8e-05  Score=53.25  Aligned_cols=48  Identities=23%  Similarity=0.513  Sum_probs=33.0

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh------hhhhhCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL------NCARACPK  261 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg------~C~~vCP~  261 (279)
                      +..+|+.||.|+.+||.....               + .++.          .  ......|+.||      .|+.+||.
T Consensus         4 ~~~~C~~C~~C~~~CP~~ai~---------------~-~~~~----------~--~~~~~~C~~C~~~~~~~~C~~~CP~   55 (80)
T 1rgv_A            4 INDDCTACDACVEECPNEAIT---------------P-GDPI----------Y--VIDPTKCSECVGAFDEPQCRLVCPA   55 (80)
T ss_dssp             CCSCCCCCCTTTTTCTTCCEE---------------C-CSSS----------C--EECTTTCCTTTTTCSSCHHHHHCSS
T ss_pred             eCCCCcChhhHHHHcChhccC---------------c-CCCe----------e--EEcchhCcCCCCcCCccHHHHhcCc
Confidence            457899999999999964211               0 0000          0  11346799999      99999998


Q ss_pred             CC
Q 023670          262 GL  263 (279)
Q Consensus       262 gi  263 (279)
                      ++
T Consensus        56 ~A   57 (80)
T 1rgv_A           56 DC   57 (80)
T ss_dssp             CC
T ss_pred             cc
Confidence            73

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A

Probab=97.51  E-value=3.4e-05  Score=51.99  Aligned_cols=51  Identities=22%  Similarity=0.471  Sum_probs=33.1

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+..+|+.||.|+.+||.....+                .++..        .+.+  ....|..||.|+.+||+++
T Consensus         5 i~~~~C~~C~~C~~~Cp~~~~~~----------------~~~~~--------~~~~--~~~~c~~C~~C~~~CP~~A   55 (60)
T 1rof_A            5 VDADACIGCGVCENLCPDVFQLG----------------DDGKA--------KVLQ--PETDLPCAKDAADSCPTGA   55 (60)
T ss_dssp             ECTTTCCSCCSSTTTCTTTBCCC----------------SSSCC--------CBSC--SSCCSTTHHHHHHHCTTCC
T ss_pred             EchhhCCCChHHHHhCcHHHeEC----------------CCCCE--------eecC--chhhHHHHHHHHHhCCHhH
Confidence            35578999999999999521100                00110        0100  2467999999999999985

>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}

Probab=97.48  E-value=0.00011  Score=53.27  Aligned_cols=47  Identities=21%  Similarity=0.537  Sum_probs=32.4

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh------hhhhhCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL------NCARACPK  261 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg------~C~~vCP~  261 (279)
                      +..+|+.||.|+.+||.....                 .+...         .  ......|+.||      .|+.+||.
T Consensus         4 ~~~~C~~C~~C~~~CP~~ai~-----------------~~~~~---------~--~~~~~~C~~C~~~~~~~~C~~~CP~   55 (82)
T 2fgo_A            4 ITDDCINCDVCEPECPNGAIS-----------------QGEEI---------Y--VIDPNLCTECVGHYDEPQCQQVCPV   55 (82)
T ss_dssp             CCTTCCCCCTTGGGCTTCCEE-----------------ECSSS---------E--EECTTTCCTTTTTCSSCHHHHHCTT
T ss_pred             eCCCCCChhhHHHHCChhccC-----------------CCCCe---------E--EEEchhCccCCCcCCCCHhHhhCCc
Confidence            457899999999999964211                 00000         0  11346799999      99999998


Q ss_pred             C
Q 023670          262 G  262 (279)
Q Consensus       262 g  262 (279)
                      +
T Consensus        56 ~   56 (82)
T 2fgo_A           56 D   56 (82)
T ss_dssp             C
T ss_pred             c
Confidence            7

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1

Probab=97.42  E-value=4e-05  Score=51.47  Aligned_cols=51  Identities=20%  Similarity=0.392  Sum_probs=32.7

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +..+|+.||.|+.+||... .   + +          ..++...        +.  .....|+.||.|+.+||+++
T Consensus         5 ~~~~C~~C~~C~~~Cp~~~-~---~-~----------~~~~~~~--------~~--~~~~~c~~C~~C~~~CP~~A   55 (59)
T 1dwl_A            5 DHEECIGCESCVELCPEVF-A---M-I----------DGEEKAM--------VT--APDSTAECAQDAIDACPVEA   55 (59)
T ss_dssp             SSCCCSSCCGGGGTSTTTE-E---E-E----------ECSSCEE--------ES--CTTCCCGGGGTGGGGSTTCC
T ss_pred             ChhhCcChhHHHHHCCHHh-e---e-c----------CCCCcEE--------Ee--cChhhhhHHHHHHHhCCHhh
Confidence            4578999999999999421 1   0 0          0001100        00  13467999999999999975

>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}

Probab=97.41  E-value=0.0001  Score=53.86  Aligned_cols=47  Identities=23%  Similarity=0.600  Sum_probs=32.4

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh------hhhhhCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL------NCARACPK  261 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg------~C~~vCP~  261 (279)
                      +..+|+.||.|+.+||.....                 .+...         .  ......|+.||      .|+.+||.
T Consensus         4 ~~~~C~~C~~C~~~CP~~ai~-----------------~~~~~---------~--~~~~~~C~~C~~~~~~~~C~~~CP~   55 (85)
T 2zvs_A            4 ITKKCINCDMCEPECPNEAIS-----------------MGDHI---------Y--EINSDKCTECVGHYETPTCQKVCPI   55 (85)
T ss_dssp             ECTTCCCCCTTTTTCTTCCEE-----------------CCSSS---------C--EECGGGCCTTTTTCSSCHHHHHCSS
T ss_pred             eCCcCcChhHHHHHCchhccC-----------------cCCCc---------e--EEeChhccCCCCcCCccHhhHhCcC
Confidence            457899999999999964321                 00000         0  11346799999      99999999


Q ss_pred             -C
Q 023670          262 -G  262 (279)
Q Consensus       262 -g  262 (279)
                       +
T Consensus        56 ~~   57 (85)
T 2zvs_A           56 PN   57 (85)
T ss_dssp             CC
T ss_pred             CC
Confidence             5

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A

Probab=97.39  E-value=3.2e-05  Score=52.04  Aligned_cols=49  Identities=14%  Similarity=0.445  Sum_probs=31.8

Q ss_pred             ccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          190 YECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       190 ~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+|+.||.|+.+||.....+                .++...       .+. . ....|+.||.|+.+||+++
T Consensus         6 ~~C~~C~~C~~~CP~~~~~~----------------~~~~~~-------~~~-~-~~~~C~~C~~C~~~CP~~A   54 (58)
T 1f2g_A            6 DDCMACEACVEICPDVFEMN----------------EEGDKA-------VVI-N-PDSDLDCVEEAIDSCPAEA   54 (58)
T ss_dssp             TTCCCCCHHHHHCTTTEEEC----------------SSSSSE-------EES-C-TTCCSTHHHHHHHTCSSCC
T ss_pred             CcCccchHHHHhCCccEEEC----------------CCCcEE-------EeC-C-CccchHHHHHHHhhCChhh
Confidence            78999999999999621000                000000       011 0 1467999999999999985

>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A

Probab=97.38  E-value=6.1e-05  Score=54.77  Aligned_cols=48  Identities=25%  Similarity=0.556  Sum_probs=33.2

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh------hhhhhCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL------NCARACPK  261 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg------~C~~vCP~  261 (279)
                      +..+|+.||.|+.+||.....               + .++.          .  ......|+.||      .|+.+||.
T Consensus         4 ~~~~C~~C~~C~~~CP~~ai~---------------~-~~~~----------~--~i~~~~C~~C~~~~~~~~C~~~CP~   55 (82)
T 3eun_A            4 ITDECINCDVCEPECPNGAIS---------------Q-GDET----------Y--VIEPSLCTECVGHYETSQCVEVCPV   55 (82)
T ss_dssp             ECTTCCCCCTTGGGCTTCCEE---------------E-CSSS----------E--EECGGGCCTTTTTCSSCHHHHHCTT
T ss_pred             eCCCCcCccchHHHCChhheE---------------c-CCCc----------e--EEchhhcCCCCCCCCccHHHHhCCc
Confidence            457899999999999964211               0 0000          0  11346799999      99999998


Q ss_pred             CC
Q 023670          262 GL  263 (279)
Q Consensus       262 gi  263 (279)
                      ++
T Consensus        56 ~A   57 (82)
T 3eun_A           56 DA   57 (82)
T ss_dssp             CC
T ss_pred             cc
Confidence            85

>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*

Probab=97.29  E-value=7e-05  Score=71.23  Aligned_cols=53  Identities=21%  Similarity=0.412  Sum_probs=36.3

Q ss_pred             hhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhccc-CccCchhhhhhhhhCCCC
Q 023670          184 AKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEF-KLYRCHTILNCARACPKG  262 (279)
Q Consensus       184 ~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~-~~~~C~~Cg~C~~vCP~g  262 (279)
                      ....+..+||.||.|+.+||......                .++..           ... ....|+.||.|+.+||.+
T Consensus        27 ~i~~d~~kCi~Cg~C~~~CP~~ai~~----------------~~~~~-----------~~i~~~~~C~~Cg~C~~~CP~~   79 (421)
T 1hfe_L           27 FVQIDEAKCIGCDTCSQYCPTAAIFG----------------EMGEP-----------HSIPHIEACINCGQCLTHCPEN   79 (421)
T ss_dssp             SEEECTTTCCCCCHHHHHCTTCCCBC----------------CTTSC-----------CBCCCGGGCCCCCTTGGGCTTC
T ss_pred             eEEECcccCCCccHHHHhcCcCceec----------------ccccc-----------eeecChhhCCchhhHHHhhCcC
Confidence            34566789999999999999642110                00000           011 346799999999999998


Q ss_pred             C
Q 023670          263 L  263 (279)
Q Consensus       263 i  263 (279)
                      +
T Consensus        80 A   80 (421)
T 1hfe_L           80 A   80 (421)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A

Probab=97.28  E-value=0.00014  Score=51.95  Aligned_cols=48  Identities=21%  Similarity=0.327  Sum_probs=33.1

Q ss_pred             ccccCcc--cCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECIL--CACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~--CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +..+|+.  ||.|+.+||.....                 .+...         .  ......|+.||.|+.+||.++
T Consensus         4 ~~~~C~~c~C~~C~~~Cp~~ai~-----------------~~~~~---------~--~~~~~~C~~Cg~C~~~CP~~a   53 (77)
T 1bc6_A            4 ITEPCIGTKDASCVEVCPVDCIH-----------------EGEDQ---------Y--YIDPDVCIDCGACEAVCPVSA   53 (77)
T ss_dssp             CCSTTTTCCCCSSTTTCTTCCEE-----------------ECSSS---------E--EECTTTCCSCCSHHHHSGGGS
T ss_pred             eCccCCCCCcchhHHhcccccEE-----------------eCCCc---------E--EECcccCcCccCCHhhcCccc
Confidence            4578999  99999999964211                 00000         0  113467999999999999874

>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...

Probab=97.24  E-value=5.4e-05  Score=57.81  Aligned_cols=48  Identities=21%  Similarity=0.461  Sum_probs=33.4

Q ss_pred             ccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +..+|+.||  .|+.+||.....                 .+...         +  ......|+.||.|+.+||.++
T Consensus         4 ~~~~C~~C~~~~C~~~CP~~ai~-----------------~~~~~---------~--~i~~~~C~~Cg~C~~~CP~~a   53 (106)
T 7fd1_A            4 VTDNCIKCKYTDCVEVCPVDCFY-----------------EGPNF---------L--VIHPDECIDCALCEPECPAQA   53 (106)
T ss_dssp             ECGGGTTTCCCHHHHHCTTCCEE-----------------ECSSC---------E--EECTTTCCCCCTTGGGCTTCC
T ss_pred             CccccCCccCcHHHHHcCccceE-----------------cCCCc---------E--EECcccCCChhhhHHhCCChh
Confidence            457899999  999999964311                 00000         0  113467999999999999886

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A

Probab=97.23  E-value=5.9e-05  Score=51.86  Aligned_cols=52  Identities=17%  Similarity=0.330  Sum_probs=32.9

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhc-CcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISD-SRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d-~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+..+|+.||.|+.+|| ..+.               +..+ +...        +.+ .....|..||.|+.+||+++
T Consensus         6 id~~~C~~Cg~C~~~CP-~~~~---------------~~~~~~~~~--------~~~-~~~~~C~~C~~C~~~CP~~A   58 (64)
T 1dax_A            6 VDQDECIACESCVEIAP-GAFA---------------MDPEIEKAY--------VKD-VEGASQEEVEEAMDTCPVQC   58 (64)
T ss_dssp             ECSTTCCSCCHHHHHCT-TTEE---------------ECSSSSSEE--------ECC-GGGSCHHHHHHHHHHSSSCC
T ss_pred             EccccCCCchHHHHhCC-ccEe---------------EcCCCCEEE--------Eec-CCCcchhHHHHHHHhCCHhh
Confidence            35578999999999999 3211               0000 0100        000 12467999999999999985

>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2

Probab=97.02  E-value=0.00011  Score=52.74  Aligned_cols=48  Identities=21%  Similarity=0.315  Sum_probs=33.2

Q ss_pred             ccccCcc--cCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECIL--CACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~--CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +..+|+.  ||.|+.+||.....               + .++.          +  ......|+.||.|+.+||.++
T Consensus         4 ~~~~C~~c~C~~C~~~CP~~ai~---------------~-~~~~----------~--~~~~~~C~~C~~C~~~CP~~A   53 (78)
T 1h98_A            4 ICEPCIGVKDQSCVEVCPVECIY---------------D-GGDQ----------F--YIHPEECIDCGACVPACPVNA   53 (78)
T ss_dssp             ECGGGTTTCCCHHHHHCTTCCEE---------------E-CSSS----------E--EECTTTCCCCCTHHHHCTTCC
T ss_pred             EchhCCCCCcChhhhhcCccceE---------------c-CCCE----------E--EECcccCCcHhHHHHhCCccc
Confidence            4578999  99999999964211               0 0000          0  113467999999999999985

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=96.97  E-value=0.00051  Score=62.39  Aligned_cols=39  Identities=26%  Similarity=0.596  Sum_probs=31.0

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC  115 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~  115 (279)
                      +++++ |.||||||.+.|.      ....+|+.|+||+|.|+| .|.
T Consensus       249 ~~~~~-~~~ll~a~~~~g~------~~~~~C~~G~Cg~C~~~v~~G~  288 (321)
T 2pia_A          249 FEIPA-NRSILEVLRDANV------RVPSSCESGTCGSCKTALCSGE  288 (321)
T ss_dssp             EEECT-TSCHHHHHHHTTC------CCCCSCSSSSSCTTEEEEEESC
T ss_pred             EEECC-CCcHHHHHHHcCC------CCCCCCCCCCCCCCEEEEecCc
Confidence            44456 8999999999983      245789999999999986 453

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*

Probab=96.92  E-value=0.00012  Score=53.05  Aligned_cols=18  Identities=11%  Similarity=0.301  Sum_probs=15.8

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|..|+.|+.+||+++
T Consensus        48 ~~~c~~C~~C~~~CP~~A   65 (81)
T 1iqz_A           48 DILIDDMMDAFEGCPTDS   65 (81)
T ss_dssp             GGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHHHhCCHhH
Confidence            357999999999999986

>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}

Probab=96.88  E-value=0.00017  Score=54.67  Aligned_cols=48  Identities=19%  Similarity=0.367  Sum_probs=33.1

Q ss_pred             ccccCccc--CcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILC--ACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~C--G~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +..+|+.|  |.|+.+||.....                 .+...         .  ......|+.||.|+.+||.++
T Consensus         4 ~~~~C~~C~c~~C~~~CP~~ai~-----------------~~~~~---------~--~~~~~~C~~Cg~C~~~CP~~A   53 (105)
T 2v2k_A            4 IAEPCVDVKDKACIEECPVDCIY-----------------EGARM---------L--YIHPDECVDCGACEPVCPVEA   53 (105)
T ss_dssp             ECGGGTTTCCCHHHHHCTTCCEE-----------------ECSSC---------E--EECTTTCCCCCCSGGGCTTCC
T ss_pred             ecccCCCCCcChhhhhcCccccC-----------------cCCCc---------E--EEeCCcCcchhhHHHhCCccC
Confidence            45789988  9999999964211                 00000         0  113467999999999999985

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A

Probab=96.78  E-value=0.00011  Score=50.44  Aligned_cols=18  Identities=33%  Similarity=0.632  Sum_probs=15.6

Q ss_pred             cccccCcccCcccCCCCC
Q 023670          187 DGMYECILCACCSTSCPS  204 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~  204 (279)
                      .+..+|+.||.|+.+||.
T Consensus         6 id~~~C~~C~~C~~~Cp~   23 (66)
T 1sj1_A            6 VDQDTCIGDAICASLCPD   23 (66)
T ss_dssp             ECTTTCCCCCHHHHHCTT
T ss_pred             ECcccCcCchHHHHhCCc
Confidence            456789999999999995

>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*

Probab=96.76  E-value=0.00023  Score=58.19  Aligned_cols=52  Identities=25%  Similarity=0.500  Sum_probs=33.8

Q ss_pred             cccccCcccC-----cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670          187 DGMYECILCA-----CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK  261 (279)
Q Consensus       187 ~~~~~CI~CG-----~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~  261 (279)
                      .+..+|+.||     .|+.+||.....                 .+.....      .+  ......|+.||.|+.+||.
T Consensus         5 vd~~~C~~C~~~~~~~C~~~CP~~ai~-----------------~~~~~~~------~~--~id~~~C~~Cg~Cv~~CP~   59 (150)
T 1jnr_B            5 VNPEKCDGCKALERTACEYICPNDLMT-----------------LDKEKMK------AY--NREPDMCWECYSCVKMCPQ   59 (150)
T ss_dssp             ECTTTCCSCCSSSSCHHHHHCTTSCEE-----------------EETTTTE------EE--ESCGGGCCCCCHHHHHCTT
T ss_pred             ECcccCCCCCCcccccchhhcCccCeE-----------------EecCCce------ee--eeCcccCcCHhHHHHhCCc
Confidence            3457899999     999999964211                 0000000      00  1134679999999999999


Q ss_pred             CC
Q 023670          262 GL  263 (279)
Q Consensus       262 gi  263 (279)
                      ++
T Consensus        60 ~A   61 (150)
T 1jnr_B           60 GA   61 (150)
T ss_dssp             CC
T ss_pred             cc
Confidence            85

>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.74  E-value=0.00025  Score=58.99  Aligned_cols=51  Identities=24%  Similarity=0.564  Sum_probs=33.6

Q ss_pred             ccccCcccC-----cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670          188 GMYECILCA-----CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG  262 (279)
Q Consensus       188 ~~~~CI~CG-----~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g  262 (279)
                      +..+|+.||     .|+.+||.....               +  +....      ..+  ......|+.||.|+.+||.+
T Consensus         5 d~~~C~gC~~c~~~~C~~~CP~~ai~---------------~--~~~~~------~~~--~~d~~~C~~Cg~Cv~~CP~~   59 (166)
T 3gyx_B            5 DPSKCDGCKGGEKTACMYICPNDLMI---------------L--DPEEM------KAF--NQEPEACWECYSCIKICPQG   59 (166)
T ss_dssp             CTTTCCCCCSSSCCHHHHHCTTSCEE---------------E--ETTTT------EEE--ESCGGGCCCCCHHHHHCSSC
T ss_pred             cchhcCCCCCCCcchhHHhCCccccE---------------E--ecCCc------eeE--ecCcccCcccChHhHhCCcc
Confidence            457899999     999999964210               0  00000      000  11346799999999999998


Q ss_pred             C
Q 023670          263 L  263 (279)
Q Consensus       263 i  263 (279)
                      +
T Consensus        60 A   60 (166)
T 3gyx_B           60 A   60 (166)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}

Probab=96.71  E-value=0.0011  Score=71.47  Aligned_cols=83  Identities=18%  Similarity=0.307  Sum_probs=59.8

Q ss_pred             EEEEEe-ccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE------CCe----eecccccccc--CCCCceE
Q 023670           66 KEFEIN-LKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI------DGC----NGLACLTKIS--PSGSAST  132 (279)
Q Consensus        66 ~~~~v~-~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i------nG~----~~lAC~t~v~--~g~~~~~  132 (279)
                      +.++++ +++ .+|||+-||... ..   -....+|.+|-||+|+|.|      +|+    .+=||.+++-  +|...+|
T Consensus        17 ~~v~~~~~~p-~~tLl~~LR~~~-~l---tGTK~gC~EG~CGACtV~v~~~~~~~~~~~~~avNsCl~~l~~~~g~~v~T   91 (1335)
T 3zyv_A           17 KKVTERNADP-EVNLLFYLRKVI-RL---TGTKYGCGGGDCGACTVMISRYDPISKRISHFSATACLVPICSLHGAAVTT   91 (1335)
T ss_dssp             EEEEESSCCT-TCBHHHHHHHTT-CC---TTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTCEEEC
T ss_pred             EEEEeCCCCc-CccHHHHHhccC-CC---cccccccCCCCCcceEEEEeeEeCCCCeEEEEEhhHHHHHHHHhcCCEEEe
Confidence            456664 445 799999999843 12   3356789999999999998      343    3559999998  7888899


Q ss_pred             EeeCCC----Ccchhhhhhccchhh
Q 023670          133 ITPLPH----MFVIKDLVVDMTNFY  153 (279)
Q Consensus       133 iepl~~----~~vikDLvvD~~~~~  153 (279)
                      ||.|.+    +--|+.-+++.+.-.
T Consensus        92 vEglg~~~~~lHpvQ~~~a~~hgsQ  116 (1335)
T 3zyv_A           92 VEGIGSTKTRIHPVQERIAKGHGTQ  116 (1335)
T ss_dssp             HHHHCCTTSCCCHHHHHHHHTTCCS
T ss_pred             eCCCCCCCCCCCHHHHHHHhcCCCc
Confidence            999864    223555666665533

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=96.66  E-value=0.00027  Score=75.39  Aligned_cols=20  Identities=30%  Similarity=0.547  Sum_probs=17.0

Q ss_pred             cccccCcccCcccCCCCCcc
Q 023670          187 DGMYECILCACCSTSCPSYW  206 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~  206 (279)
                      .+.++||.||.|+.+||...
T Consensus       683 ~d~~kCi~Cg~Cv~vCP~~A  702 (1231)
T 2c42_A          683 WVPENCIQCNQCAFVCPHSA  702 (1231)
T ss_dssp             ECTTTCCCCCHHHHHCSSCC
T ss_pred             EeCccCCchhhHHHhCCccc
Confidence            35689999999999999753

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=96.49  E-value=0.0019  Score=64.18  Aligned_cols=50  Identities=28%  Similarity=0.565  Sum_probs=39.1

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEE-CCe-----------------eeccccccccC
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNI-DGC-----------------NGLACLTKISP  126 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~  126 (279)
                      +++++ |.|||||+++.|.      ....+|+ .|.||+|.|.| .|.                 .+|+|.+.+..
T Consensus        15 v~v~~-G~tLLeAa~~aGi------~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~~~s   83 (631)
T 3zyy_X           15 VAISE-NTNLMEALNLAGI------NIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLACQTYPES   83 (631)
T ss_dssp             EEECT-TSCHHHHHHHHTC------CCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEETTTEEECS
T ss_pred             EEECC-CCcHHHHHHHcCC------CCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEeeeCEECC
Confidence            44556 8999999999983      2457899 89999999986 342                 37899998873

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.44  E-value=0.0018  Score=62.09  Aligned_cols=56  Identities=27%  Similarity=0.271  Sum_probs=41.9

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCc--cCeeEEEECCee-eccccccccCC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGI--CGSCAMNIDGCN-GLACLTKISPS  127 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~--CG~C~v~inG~~-~lAC~t~v~~g  127 (279)
                      +.|++  .+ |.||++||..+|.   |.|++...- +.|.  ||.|.|+|||.+ +.||.|.+.+|
T Consensus        23 ~~~~~--~~-g~ti~~a~~~~g~---~~~~~~~~~~p~g~~~~~~c~v~v~g~~~~~ac~~~v~~G   82 (493)
T 1y56_A           23 KELEA--YE-GEKLPVALLANEI---YWLTTSNEGRKRGAFTFGPVPMTVNGVKGLEARRIKVKDG   82 (493)
T ss_dssp             EEEEE--ET-TCBHHHHHHHTTC---CCCEECTTSCEECSSSSSCCEEBSSSCTTEEGGGCBCCTT
T ss_pred             EEEEe--cC-CCHHHHHHHHCCC---ceecCCCCCCCCccccceEEEEEECCEecccceeEEcccC
Confidence            44555  56 8999999999884   556643322 2355  789999999975 78999999987

>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A

Probab=96.37  E-value=0.00062  Score=53.92  Aligned_cols=43  Identities=16%  Similarity=0.366  Sum_probs=11.5

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID  113 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in  113 (279)
                      +.++|++.+ |.|||+|+++++.. +|.   ...|+ .|.||+|.|.|.
T Consensus        16 ~~~~v~~~~-G~tLl~aa~~~gi~-i~g---~~~CgG~g~CgtC~v~v~   59 (123)
T 3n9z_C           16 ETLTTKGKV-GDSLLDVVVENNLD-IDG---FGACEGTLACSTCHLIFE   59 (123)
T ss_dssp             --------------------------------CTTCSSSSCSTTBC---
T ss_pred             CEEEEEECC-CCcHHHHHHHcCCC-CCc---CCCCCCCCEeCCCeeEEe
Confidence            346677777 99999999998842 211   26797 699999999885

>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*

Probab=95.86  E-value=0.0022  Score=57.44  Aligned_cols=48  Identities=19%  Similarity=0.236  Sum_probs=34.1

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhh----------h--
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTI----------L--  253 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~C----------g--  253 (279)
                      ..+.++||.||.|+.+||.....               +  +..             ......|+.|          |  
T Consensus        93 ~id~~~CigC~~C~~~CP~~Ai~---------------~--~~~-------------~~~~~kC~~C~~r~~~~~~~G~~  142 (274)
T 1ti6_B           93 LIDPEKAKGKKELLDTCPYGVMY---------------W--NEE-------------ENVAQKCTMCAHLLDDESWAPKM  142 (274)
T ss_dssp             EECTTTTTTCGGGGGGCSSCCCE---------------E--ETT-------------TTEEECCCTTHHHHTCTTCTTCS
T ss_pred             EechhhccchHHHHhhCccCCeE---------------E--Ecc-------------cCccccCCCchhhhhhhccCCCC
Confidence            34567899999999999964211               0  000             0124679999          9  


Q ss_pred             -hhhhhCCCCC
Q 023670          254 -NCARACPKGL  263 (279)
Q Consensus       254 -~C~~vCP~gi  263 (279)
                       .|+.+||+++
T Consensus       143 P~Cv~~CP~~A  153 (274)
T 1ti6_B          143 PRCAHNCGSFV  153 (274)
T ss_dssp             CHHHHHCSSCC
T ss_pred             cchhhhCCcCc
Confidence             9999999986

>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}

Probab=95.74  E-value=0.0017  Score=60.31  Aligned_cols=18  Identities=28%  Similarity=0.722  Sum_probs=15.0

Q ss_pred             ccCchhhh---------hhhhhCCCCC
Q 023670          246 LYRCHTIL---------NCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg---------~C~~vCP~gi  263 (279)
                      ...|+.|+         .|+.+||+++
T Consensus       208 ~~kC~~C~~r~~~g~~paCv~~CP~~A  234 (352)
T 2ivf_B          208 SEKCILCYPRIEKGIANACNRQCPGRV  234 (352)
T ss_dssp             EEECCTTHHHHTTTBCCHHHHTCTTCC
T ss_pred             ccccCCCcchhhcCCCChHHHhcCccc
Confidence            46799996         8999999887

>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*

Probab=95.62  E-value=0.0023  Score=54.37  Aligned_cols=20  Identities=25%  Similarity=0.589  Sum_probs=15.2

Q ss_pred             hcccccCcccC--cccCCCCCc
Q 023670          186 LDGMYECILCA--CCSTSCPSY  205 (279)
Q Consensus       186 ~~~~~~CI~CG--~C~~~CP~~  205 (279)
                      ......|+.|+  .|+.+||..
T Consensus        52 ~~~~~~C~~C~~p~C~~~CP~g   73 (195)
T 2vpz_B           52 EFRPEQCLHCENPPCVPVCPTG   73 (195)
T ss_dssp             EEEEEECCCCSSCTTTTTCSSS
T ss_pred             EECcccCcCccCcHHHHhcCCC
Confidence            34567899998  799999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.60  E-value=0.00081  Score=70.51  Aligned_cols=49  Identities=22%  Similarity=0.477  Sum_probs=31.8

Q ss_pred             cccccCcccCcccCCCCC--cccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670          187 DGMYECILCACCSTSCPS--YWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK  261 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~--~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~  261 (279)
                      .+..+|+.||.|+.+||.  +...              .+  +....       ..  ... ..|+.||.|+.+||.
T Consensus       948 id~~~C~~Cg~C~~~CP~~~~~ai--------------~~--~~~~~-------~~--~~~-~~C~~Cg~C~~~CP~  998 (1025)
T 1gte_A          948 IDEEMCINCGKCYMTCNDSGYQAI--------------QF--DPETH-------LP--TVT-DTCTGCTLCLSVCPI  998 (1025)
T ss_dssp             ECTTTCCCCCHHHHHHHHHSCSCE--------------EE--CTTTC-------CE--EEC-TTCCCCCHHHHHCSS
T ss_pred             EEcccCcccCHHHHhcCccccCCE--------------EE--eCCCc-------eE--EeC-ccCCChhHHHhhCCC
Confidence            455789999999999996  2111              00  00000       00  112 679999999999998

>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}

Probab=95.58  E-value=0.0023  Score=59.36  Aligned_cols=52  Identities=21%  Similarity=0.441  Sum_probs=35.1

Q ss_pred             hcccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +.+...|+.|+  .|+.+||.....                 .+..+.       .+  ......|+.||.|+.+||.++
T Consensus       145 ~~~~~~C~~C~~~~Cv~~CP~gAi~-----------------~~~~~g-------~v--~id~~kCigCg~Cv~aCP~~A  198 (352)
T 2ivf_B          145 FYLARMCNHCTNPACLAACPTGAIY-----------------KREDNG-------IV--LVDQERCKGHRHCVEACPYKA  198 (352)
T ss_dssp             EEEEECCCCCSSCHHHHHCTTCCEE-----------------ECTTTC-------CE--EECTTTCCCCCHHHHHCTTCC
T ss_pred             EECCCCCcCcCCccccccCCCCcee-----------------ecCCCC-------eE--EechhhcCCchHHHhhcCccc
Confidence            45568999999  999999964321                 000000       01  113467999999999999986

>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*

Probab=95.53  E-value=0.0028  Score=57.28  Aligned_cols=47  Identities=26%  Similarity=0.702  Sum_probs=32.9

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh---------hhhh
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL---------NCAR  257 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg---------~C~~  257 (279)
                      .+..+|+.||.|+.+||.....               +  +..             ......|+.|+         .|+.
T Consensus       128 id~~~CigCg~C~~~CP~~ai~---------------~--~~~-------------~~~~~kC~~C~~r~~~g~~p~Cv~  177 (294)
T 1kqf_B          128 FQSENCIGCGYCIAGCPFNIPR---------------L--NKE-------------DNRVYKCTLCVDRVSVGQEPACVK  177 (294)
T ss_dssp             ECGGGCCCCCHHHHHCTTCCCE---------------E--ETT-------------TTEEECCCTTHHHHTTTCCCHHHH
T ss_pred             eCcccCCCcchhhhcCCCCCcE---------------e--cCC-------------CCCeeeCCCccchhhcCccHHHHH
Confidence            4567899999999999954210               0  000             01235799998         9999


Q ss_pred             hCCCCC
Q 023670          258 ACPKGL  263 (279)
Q Consensus       258 vCP~gi  263 (279)
                      +||+++
T Consensus       178 ~CP~~A  183 (294)
T 1kqf_B          178 TCPTGA  183 (294)
T ss_dssp             HCTTSC
T ss_pred             hCCcCc
Confidence            999986

>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*

Probab=95.46  E-value=0.0024  Score=62.02  Aligned_cols=48  Identities=21%  Similarity=0.345  Sum_probs=33.8

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh---------hhh
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL---------NCA  256 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg---------~C~  256 (279)
                      ..+..+|+.||.|+.+||.....               +  +..             ......|+.||         .|+
T Consensus       211 ~id~~kCigCg~Cv~~CP~~AI~---------------~--~~~-------------~~~~~kC~~Cg~ri~~G~~P~Cv  260 (512)
T 1q16_B          211 LIDQDKCRGWRMCITGCPYKKIY---------------F--NWK-------------SGKSEKCIFCYPRIEAGQPTVCS  260 (512)
T ss_dssp             EECTTTCCCCCCHHHHCTTCCEE---------------E--ETT-------------TTEEEECCTTHHHHTTTCCCHHH
T ss_pred             EECHHHCCCchHHHhhCCcccee---------------c--ccC-------------CCCcccCcCCCchhhcCCCCceE
Confidence            34567899999999999964210               0  000             01246799999         999


Q ss_pred             hhCCCCC
Q 023670          257 RACPKGL  263 (279)
Q Consensus       257 ~vCP~gi  263 (279)
                      .+||.++
T Consensus       261 ~~CP~~A  267 (512)
T 1q16_B          261 ETCVGRI  267 (512)
T ss_dssp             HTCTTCC
T ss_pred             eeCchhh
Confidence            9999987

>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*

Probab=95.42  E-value=0.003  Score=53.61  Aligned_cols=47  Identities=23%  Similarity=0.535  Sum_probs=33.3

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh---------hhh
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL---------NCA  256 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg---------~C~  256 (279)
                      ..+..+||.||.|+.+||.....               +  +..             . +...|+.|+         .|+
T Consensus        84 ~id~~~CigC~~C~~~CP~~Ai~---------------~--~~~-------------~-~~~kC~~C~~~~~~g~~p~Cv  132 (195)
T 2vpz_B           84 LVDPKKCIACGACIAACPYDARY---------------L--HPA-------------G-YVSKCTFCAHRLEKGKVPACV  132 (195)
T ss_dssp             EECTTTCCCCCHHHHHCTTCCCE---------------E--CTT-------------S-SEECCCTTHHHHHTTCCCHHH
T ss_pred             eecCCCCCCcChhHhhCCCCCeE---------------E--CCC-------------C-CCccCcCcchHHhCCCCchhH
Confidence            34567899999999999954210               0  000             0 146799999         799


Q ss_pred             hhCCCCC
Q 023670          257 RACPKGL  263 (279)
Q Consensus       257 ~vCP~gi  263 (279)
                      .+||+++
T Consensus       133 ~~CP~~A  139 (195)
T 2vpz_B          133 ETCPTYC  139 (195)
T ss_dssp             HSCTTCC
T ss_pred             hhCCccc
Confidence            9999886

>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5

Probab=94.90  E-value=0.0068  Score=52.15  Aligned_cols=60  Identities=12%  Similarity=0.091  Sum_probs=38.5

Q ss_pred             cccccCc--ccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhh------h---hh
Q 023670          187 DGMYECI--LCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTI------L---NC  255 (279)
Q Consensus       187 ~~~~~CI--~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~C------g---~C  255 (279)
                      .+..+|+  .||.|+.+||.....               +  +..             ......|+.|      |   .|
T Consensus       103 id~~~C~~~~C~~C~~~CP~~Ai~---------------~--~~~-------------~~~~~kC~~C~~~~~~G~~p~C  152 (214)
T 1h0h_B          103 FTPKTKDLEDYESVISACPYDVPR---------------K--VAE-------------SNQMAKCDMCIDRITNGLRPAC  152 (214)
T ss_dssp             ECGGGGGCSCHHHHHHHCTTCCCE---------------E--CTT-------------SSCEECCCTTHHHHTTTCCCHH
T ss_pred             EeHHHCccccccHHHHhcCCCCeE---------------e--cCC-------------CcccCcCCCCcchhhcCCChhH
Confidence            4557899  999999999954211               0  000             0124679999      5   99


Q ss_pred             hhhCCCCC----ChHHHHHHHHHHH
Q 023670          256 ARACPKGL----NPGKQIINIKQLQ  276 (279)
Q Consensus       256 ~~vCP~gi----~~~~~I~~lR~~~  276 (279)
                      +.+||+++    +..++....++.+
T Consensus       153 v~~CP~~Ai~~~~~~~~~~~~~~~~  177 (214)
T 1h0h_B          153 VTSCPTGAMNFGDLSEMEAMASARL  177 (214)
T ss_dssp             HHHCSSSCEEEEEHHHHHHHHHHHH
T ss_pred             HHhcCcccEEEccHHHHHHHHHHHH
Confidence            99999886    3445555555443

>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*

Probab=94.39  E-value=0.0073  Score=58.63  Aligned_cols=52  Identities=21%  Similarity=0.389  Sum_probs=34.6

Q ss_pred             hcccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ......|+.|+  .|+.+||.....                 .+..+.    .   +  ......|+.||.|+.+||.++
T Consensus       178 ~~~~~~C~~C~~~~Cv~aCP~gAI~-----------------~~~~~g----~---v--~id~~kCigCg~Cv~~CP~~A  231 (512)
T 1q16_B          178 MYLPRLCEHCLNPACVATCPSGAIY-----------------KREEDG----I---V--LIDQDKCRGWRMCITGCPYKK  231 (512)
T ss_dssp             EEEEECCCCCSSCHHHHTCTTCCEE-----------------EETTTC----C---E--EECTTTCCCCCCHHHHCTTCC
T ss_pred             EecCccCcCCCCchhhhhCCcCcEE-----------------eecCCC----e---E--EECHHHCCCchHHHhhCCccc
Confidence            44678999999  699999964211                 000000    0   0  113467999999999999986

>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*

Probab=94.27  E-value=0.0048  Score=55.70  Aligned_cols=51  Identities=22%  Similarity=0.486  Sum_probs=34.1

Q ss_pred             cccccCcccC--cccCCCCC-cccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCA--CCSTSCPS-YWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG--~C~~~CP~-~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .....|+.|+  .|+.+||. .....               ..++.          +  ......|+.||.|..+||.++
T Consensus        95 ~~~~~C~~C~~~~C~~~CP~~gAi~~---------------~~~g~----------v--~id~~~CigCg~C~~~CP~~a  147 (294)
T 1kqf_B           95 IRKDGCMHCEDPGCLKACPSAGAIIQ---------------YANGI----------V--DFQSENCIGCGYCIAGCPFNI  147 (294)
T ss_dssp             EEEESCCCBSSCHHHHHCCSTTSEEE---------------ETTSC----------E--EECGGGCCCCCHHHHHCTTCC
T ss_pred             ECcccCCCcCChhhhhhCCccCcccc---------------ccccc----------e--EeCcccCCCcchhhhcCCCCC
Confidence            3457899999  89999996 32110               00000          1  113467999999999999986


Q ss_pred             C
Q 023670          264 N  264 (279)
Q Consensus       264 ~  264 (279)
                      -
T Consensus       148 i  148 (294)
T 1kqf_B          148 P  148 (294)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*

Probab=93.89  E-value=0.017  Score=51.66  Aligned_cols=51  Identities=14%  Similarity=0.206  Sum_probs=35.0

Q ss_pred             hcccccCcccCc--ccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCAC--CSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~--C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+....|++|+.  |+.+||. .....               .++.          +  ......|+.||.|..+||.++
T Consensus        62 ~~~~~~C~~C~~p~C~~~CP~-Ai~~~---------------~~g~----------v--~id~~~CigC~~C~~~CP~~A  113 (274)
T 1ti6_B           62 NYRPTPCMHCENAPCVAKGNG-AVYQR---------------EDGI----------V--LIDPEKAKGKKELLDTCPYGV  113 (274)
T ss_dssp             EEEEECCCCCTTCHHHHHTTT-SEEEC---------------TTSC----------E--EECTTTTTTCGGGGGGCSSCC
T ss_pred             eEcCCcCCCCCChHHHhhChH-Hhhhc---------------cCCc----------E--EechhhccchHHHHhhCccCC
Confidence            345678999999  9999997 42100               0000          0  113467999999999999986


Q ss_pred             C
Q 023670          264 N  264 (279)
Q Consensus       264 ~  264 (279)
                      -
T Consensus       114 i  114 (274)
T 1ti6_B          114 M  114 (274)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5

Probab=92.38  E-value=0.026  Score=48.42  Aligned_cols=56  Identities=18%  Similarity=0.175  Sum_probs=34.3

Q ss_pred             hcccccCcccCc--ccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCch--hhhhhhhhCCC
Q 023670          186 LDGMYECILCAC--CSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCH--TILNCARACPK  261 (279)
Q Consensus       186 ~~~~~~CI~CG~--C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~--~Cg~C~~vCP~  261 (279)
                      .+....|+.|+.  |+.+||+....            ++.  .+..+.       .+  ......|+  .||.|..+||.
T Consensus        66 ~~~~~~C~~C~~p~C~~~CP~~~~g------------Ai~--~~~~~g-------~v--~id~~~C~~~~C~~C~~~CP~  122 (214)
T 1h0h_B           66 LFFPDQCRHCIAPPCKATADMEDES------------AII--HDDATG-------CV--LFTPKTKDLEDYESVISACPY  122 (214)
T ss_dssp             EEEEECCCCCSSCHHHHHHTTTCTT------------SEE--ECTTTC-------CE--EECGGGGGCSCHHHHHHHCTT
T ss_pred             eecCCcCcCcCCchhhccCCccccc------------cEE--ecCCCC-------eE--EEeHHHCccccccHHHHhcCC
Confidence            345678999997  99999932100            000  000000       01  11346799  99999999999


Q ss_pred             CCC
Q 023670          262 GLN  264 (279)
Q Consensus       262 gi~  264 (279)
                      ++-
T Consensus       123 ~Ai  125 (214)
T 1h0h_B          123 DVP  125 (214)
T ss_dssp             CCC
T ss_pred             CCe
Confidence            863

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=90.87  E-value=0.25  Score=51.40  Aligned_cols=58  Identities=9%  Similarity=-0.040  Sum_probs=44.6

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCC------CCCCccCeeEEEEC---C----e-eeccccccccCC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRS------CREGICGSCAMNID---G----C-NGLACLTKISPS  127 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~------c~~g~CG~C~v~in---G----~-~~lAC~t~v~~g  127 (279)
                      +.|+.  .+ |.||+.||..+|. .....+|+++      |..|.|..|.|+|+   |    . ++.||.+.+.+|
T Consensus        30 ~~~~~--~~-g~tv~~aL~~~Gv-~~~~~s~~~~~prg~~~~~~~c~~~~v~v~~~~~g~~~~~~~~ac~~~~~~g  101 (965)
T 2gag_A           30 AKLSA--FR-GDTVASALLANGV-RRAGNSLYLDRPRGIFAAGVEEPNALVTVSARHEQDIDESMLPATTVPVTED  101 (965)
T ss_dssp             EEEEE--EE-TCBHHHHHHHTTC-CBCSCCTTTCCCCBCCCSSTTCCSCEEEECCCSTTCCCEEEEEGGGCBCCTT
T ss_pred             EEEEe--cC-CCHHHHHHHHcCC-eEeecCCCCCCCcccccCCccCCceEEEEccCCCCCcCCccccceeeecccc
Confidence            55554  35 7899999999984 4456665322      78899999999999   6    3 567999999986

>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*

Probab=89.74  E-value=0.024  Score=52.66  Aligned_cols=19  Identities=26%  Similarity=0.518  Sum_probs=16.2

Q ss_pred             CccCchhhhhhhhhCCCCC
Q 023670          245 KLYRCHTILNCARACPKGL  263 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....|+.||.|..+||.++
T Consensus       237 d~~~C~~Cg~C~~~CP~~A  255 (366)
T 3mm5_B          237 DVEKCMYCGNCYTMCPGMP  255 (366)
T ss_dssp             CGGGCCCCCHHHHHCTTCC
T ss_pred             ehhhCCCcchHHHhCCHhh
Confidence            3467999999999999973

>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}

Probab=89.33  E-value=0.1  Score=37.05  Aligned_cols=18  Identities=28%  Similarity=0.630  Sum_probs=15.8

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||.|+.+||.++
T Consensus         5 ~~~C~~C~~C~~~CP~~a   22 (82)
T 2fgo_A            5 TDDCINCDVCEPECPNGA   22 (82)
T ss_dssp             CTTCCCCCTTGGGCTTCC
T ss_pred             CCCCCChhhHHHHCChhc
Confidence            357999999999999875

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=89.27  E-value=0.032  Score=54.73  Aligned_cols=55  Identities=13%  Similarity=0.133  Sum_probs=34.6

Q ss_pred             cccccC------cccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCC
Q 023670          187 DGMYEC------ILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACP  260 (279)
Q Consensus       187 ~~~~~C------I~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP  260 (279)
                      .+...|      ..||.|+.+||....               .++ +..+... .+   +  ......|+.||.|..+||
T Consensus       507 ~d~~~~~~~~~~~~~~~c~~~CPa~~~---------------~~~-~~~~~~~-~~---~--~i~~~~Ci~C~~C~~~cp  564 (584)
T 2gmh_A          507 KDDSVPVNRNLSIYDGPEQRFCPAGVY---------------EFV-PLEQGDG-FR---L--QINAQNCVHCKTCDIKDP  564 (584)
T ss_dssp             SSTTHHHHTHHHHHCCTHHHHCTTCCE---------------EEE-ECSSTTC-EE---E--EECGGGCCCCCHHHHHCT
T ss_pred             cCcccchhhchhhhcchhhhcCChhhE---------------EEe-ecCCCCc-eE---E--EEeCCCCcCCCCchhhCC
Confidence            345678      889999999997532               111 1000000 00   1  124678999999999999


Q ss_pred             CCC
Q 023670          261 KGL  263 (279)
Q Consensus       261 ~gi  263 (279)
                      +++
T Consensus       565 ~~~  567 (584)
T 2gmh_A          565 SQN  567 (584)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            876

>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A

Probab=89.19  E-value=0.11  Score=33.82  Aligned_cols=18  Identities=22%  Similarity=0.481  Sum_probs=15.7

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||.|..+||.++
T Consensus         5 ~~~C~~C~~C~~~CP~~a   22 (55)
T 2fdn_A            5 NEACISCGACEPECPVNA   22 (55)
T ss_dssp             CTTCCCCCTTGGGCTTCC
T ss_pred             cccCcChhhHHHHCCccc
Confidence            357999999999999875

>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*

Probab=88.89  E-value=0.11  Score=36.42  Aligned_cols=18  Identities=33%  Similarity=0.802  Sum_probs=15.8

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||.|+.+||.++
T Consensus         7 ~~~C~~Cg~C~~~CP~~a   24 (80)
T 1jb0_C            7 YDTCIGCTQCVRACPTDV   24 (80)
T ss_dssp             ETTCCCCCHHHHHCTTCC
T ss_pred             CCcCcChhHHHHHCCccc
Confidence            357999999999999875

>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1

Probab=88.76  E-value=0.11  Score=36.80  Aligned_cols=18  Identities=22%  Similarity=0.560  Sum_probs=15.9

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||.|+.+||.++
T Consensus         5 ~~~C~~C~~C~~~CP~~a   22 (80)
T 1rgv_A            5 NDDCTACDACVEECPNEA   22 (80)
T ss_dssp             CSCCCCCCTTTTTCTTCC
T ss_pred             CCCCcChhhHHHHcChhc
Confidence            367999999999999875

>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A

Probab=88.70  E-value=0.12  Score=36.78  Aligned_cols=18  Identities=28%  Similarity=0.643  Sum_probs=15.9

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||.|+.+||.++
T Consensus         5 ~~~C~~C~~C~~~CP~~a   22 (82)
T 3eun_A            5 TDECINCDVCEPECPNGA   22 (82)
T ss_dssp             CTTCCCCCTTGGGCTTCC
T ss_pred             CCCCcCccchHHHCChhh
Confidence            367999999999999875

>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}

Probab=88.42  E-value=0.12  Score=37.18  Aligned_cols=17  Identities=24%  Similarity=0.620  Sum_probs=15.4

Q ss_pred             cCchhhhhhhhhCCCCC
Q 023670          247 YRCHTILNCARACPKGL  263 (279)
Q Consensus       247 ~~C~~Cg~C~~vCP~gi  263 (279)
                      ..|+.||.|+.+||.++
T Consensus         6 ~~C~~C~~C~~~CP~~a   22 (85)
T 2zvs_A            6 KKCINCDMCEPECPNEA   22 (85)
T ss_dssp             TTCCCCCTTTTTCTTCC
T ss_pred             CcCcChhHHHHHCchhc
Confidence            57999999999999875

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A

Probab=87.73  E-value=0.13  Score=33.62  Aligned_cols=18  Identities=22%  Similarity=0.628  Sum_probs=15.8

Q ss_pred             cCchhhhhhhhhCCCCCC
Q 023670          247 YRCHTILNCARACPKGLN  264 (279)
Q Consensus       247 ~~C~~Cg~C~~vCP~gi~  264 (279)
                      ..|+.||.|+.+||.++.
T Consensus         6 ~~C~~C~~C~~~CP~~~~   23 (58)
T 1f2g_A            6 DDCMACEACVEICPDVFE   23 (58)
T ss_dssp             TTCCCCCHHHHHCTTTEE
T ss_pred             CcCccchHHHHhCCccEE
Confidence            679999999999998653

>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A

Probab=87.52  E-value=0.15  Score=37.75  Aligned_cols=18  Identities=28%  Similarity=0.604  Sum_probs=15.8

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||.|+.+||.++
T Consensus        42 ~~~C~~Cg~C~~~CP~~a   59 (103)
T 1xer_A           42 FDLCIADGSCINACPVNV   59 (103)
T ss_dssp             TTTCCCCCHHHHHCTTCC
T ss_pred             hhhCCChhhHHHHcCccC
Confidence            467999999999999775

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A

Probab=87.16  E-value=0.16  Score=34.05  Aligned_cols=17  Identities=24%  Similarity=0.542  Sum_probs=14.7

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||.|+.+|| ++
T Consensus         8 ~~~C~~Cg~C~~~CP-~~   24 (64)
T 1dax_A            8 QDECIACESCVEIAP-GA   24 (64)
T ss_dssp             STTCCSCCHHHHHCT-TT
T ss_pred             cccCCCchHHHHhCC-cc
Confidence            467999999999999 54

>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*

Probab=86.62  E-value=0.21  Score=40.69  Aligned_cols=19  Identities=37%  Similarity=0.599  Sum_probs=16.6

Q ss_pred             CccCchhhhhhhhhCCCCC
Q 023670          245 KLYRCHTILNCARACPKGL  263 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....|+.||.|+.+||.++
T Consensus        49 d~~~Ci~C~~C~~~CP~~a   67 (182)
T 3i9v_9           49 GLEKCIGCSLCAAACPAYA   67 (182)
T ss_dssp             SCBSCCCCCHHHHHCTTCC
T ss_pred             CCccCcccccchhhCCccc
Confidence            3568999999999999875

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A

Probab=85.82  E-value=0.19  Score=32.83  Aligned_cols=19  Identities=21%  Similarity=0.448  Sum_probs=16.1

Q ss_pred             ccCchhhhhhhhhCCCCCC
Q 023670          246 LYRCHTILNCARACPKGLN  264 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ...|+.||.|+.+||..+.
T Consensus         7 ~~~C~~C~~C~~~Cp~~~~   25 (60)
T 1rof_A            7 ADACIGCGVCENLCPDVFQ   25 (60)
T ss_dssp             TTTCCSCCSSTTTCTTTBC
T ss_pred             hhhCCCChHHHHhCcHHHe
Confidence            4679999999999997654

>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*

Probab=85.58  E-value=0.15  Score=48.18  Aligned_cols=20  Identities=25%  Similarity=0.569  Sum_probs=17.1

Q ss_pred             CccCchhhhhhhhhCCCCCC
Q 023670          245 KLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ....|+.||.|..+||+++.
T Consensus       282 d~~~Ci~Cg~Ci~~CP~~~~  301 (418)
T 3mm5_A          282 DNRECVRCMHCINKMPKALK  301 (418)
T ss_dssp             CTTTCCCCCHHHHHCTTTEE
T ss_pred             ChhhcCccChhHHhCcHhhc
Confidence            35679999999999999763

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*

Probab=85.47  E-value=0.22  Score=35.30  Aligned_cols=16  Identities=25%  Similarity=0.449  Sum_probs=14.4

Q ss_pred             ccCchhhhhhhhhCCC
Q 023670          246 LYRCHTILNCARACPK  261 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~  261 (279)
                      ...|+.||.|+.+||.
T Consensus         8 ~~~CigCg~C~~~CP~   23 (81)
T 1iqz_A            8 KETCIACGACGAAAPD   23 (81)
T ss_dssp             TTTCCCCSHHHHHCTT
T ss_pred             cccCcccChhhHhCch
Confidence            4689999999999994

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1

Probab=83.33  E-value=0.33  Score=31.53  Aligned_cols=18  Identities=22%  Similarity=0.571  Sum_probs=15.1

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||.|+.+||..+
T Consensus         6 ~~~C~~C~~C~~~Cp~~~   23 (59)
T 1dwl_A            6 HEECIGCESCVELCPEVF   23 (59)
T ss_dssp             SCCCSSCCGGGGTSTTTE
T ss_pred             hhhCcChhHHHHHCCHHh
Confidence            467999999999999643

>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}

Probab=82.51  E-value=0.41  Score=35.55  Aligned_cols=19  Identities=32%  Similarity=0.749  Sum_probs=16.1

Q ss_pred             ccccCcccCcccCCCCCcc
Q 023670          188 GMYECILCACCSTSCPSYW  206 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~  206 (279)
                      +...|+.||.|+.+||...
T Consensus        35 ~~~~C~~Cg~C~~~CP~~A   53 (105)
T 2v2k_A           35 HPDECVDCGACEPVCPVEA   53 (105)
T ss_dssp             CTTTCCCCCCSGGGCTTCC
T ss_pred             eCCcCcchhhHHHhCCccC
Confidence            4568999999999999753

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=82.24  E-value=1.2  Score=31.51  Aligned_cols=34  Identities=12%  Similarity=0.140  Sum_probs=25.1

Q ss_pred             EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeec
Q 023670           69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL  118 (279)
Q Consensus        69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~l  118 (279)
                      ++++++ |.|+.|.|++++....               ..+|.+||+.+.
T Consensus        14 ~~ev~~-g~Tv~dLL~~Lgl~~~---------------~VvV~vNG~~v~   47 (74)
T 2l32_A           14 EVAVDD-DGTYADLVRAVDLSPH---------------EVTVLVDGRPVP   47 (74)
T ss_dssp             EEECST-TCSHHHHHHTTCCCSS---------------CCCEECCCCCCC
T ss_pred             eEEcCC-CCcHHHHHHHcCCCcc---------------eEEEEECCEECC
Confidence            356667 8999999999874211               258999998664

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=82.19  E-value=0.51  Score=40.90  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=20.1

Q ss_pred             cCCCCCCccCeeEEEEC-C--eeeccccc
Q 023670           97 RRSCREGICGSCAMNID-G--CNGLACLT  122 (279)
Q Consensus        97 ~~~c~~g~CG~C~v~in-G--~~~lAC~t  122 (279)
                      +..|..|+||.|.|.+. +  ...+.|+.
T Consensus       223 ~m~CG~G~C~~C~~~~~~~~~~~~~~C~d  251 (262)
T 1ep3_B          223 RMACGIGACYACVEHDKEDESHALKVCED  251 (262)
T ss_dssp             CCSSSSSSSCTTEEEETTEEEEEEETTTT
T ss_pred             cccCcccccccCCcccccCCCceeEEeCC
Confidence            44699999999999986 2  34578864

>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...

Probab=81.47  E-value=0.44  Score=35.51  Aligned_cols=18  Identities=22%  Similarity=0.606  Sum_probs=15.8

Q ss_pred             ccCchhhh--hhhhhCCCCC
Q 023670          246 LYRCHTIL--NCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg--~C~~vCP~gi  263 (279)
                      ...|+.||  .|+.+||.++
T Consensus         5 ~~~C~~C~~~~C~~~CP~~a   24 (106)
T 7fd1_A            5 TDNCIKCKYTDCVEVCPVDC   24 (106)
T ss_dssp             CGGGTTTCCCHHHHHCTTCC
T ss_pred             ccccCCccCcHHHHHcCccc
Confidence            36799999  9999999876

>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2

Probab=80.62  E-value=0.48  Score=33.13  Aligned_cols=18  Identities=22%  Similarity=0.479  Sum_probs=15.4

Q ss_pred             ccCchh--hhhhhhhCCCCC
Q 023670          246 LYRCHT--ILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~--Cg~C~~vCP~gi  263 (279)
                      ...|+.  ||.|+.+||.++
T Consensus         5 ~~~C~~c~C~~C~~~CP~~a   24 (78)
T 1h98_A            5 CEPCIGVKDQSCVEVCPVEC   24 (78)
T ss_dssp             CGGGTTTCCCHHHHHCTTCC
T ss_pred             chhCCCCCcChhhhhcCccc
Confidence            357999  999999999874

>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D

Probab=80.54  E-value=0.21  Score=44.20  Aligned_cols=23  Identities=4%  Similarity=0.017  Sum_probs=17.0

Q ss_pred             CceEEEEEeccCCCchHHHHHHHcc
Q 023670           63 PELKEFEINLKECGPMVLDALIKIK   87 (279)
Q Consensus        63 ~~~~~~~v~~~~~g~tvLdal~~~~   87 (279)
                      +.+-+|.++ . .|.|+-.|||++-
T Consensus        10 ~~~~~f~l~-g-~~~t~~NalRRil   32 (265)
T 2pa8_D           10 DTRIDLVFE-G-YPLEFVNAIRRAS   32 (265)
T ss_dssp             SSEEEEEEE-S-SCHHHHHHHHHHH
T ss_pred             CCEEEEEEe-C-CCHHHHHHHHHHH
Confidence            456778777 2 3789999999864

>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A

Probab=80.16  E-value=0.5  Score=32.89  Aligned_cols=18  Identities=22%  Similarity=0.506  Sum_probs=15.6

Q ss_pred             ccCchh--hhhhhhhCCCCC
Q 023670          246 LYRCHT--ILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~--Cg~C~~vCP~gi  263 (279)
                      ...|+.  ||.|+.+||.++
T Consensus         5 ~~~C~~c~C~~C~~~Cp~~a   24 (77)
T 1bc6_A            5 TEPCIGTKDASCVEVCPVDC   24 (77)
T ss_dssp             CSTTTTCCCCSSTTTCTTCC
T ss_pred             CccCCCCCcchhHHhccccc
Confidence            457999  999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1kf6b2	105	d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur	3e-39
d1nekb1	132	a.1.2.1 (B:107-238) Succinate dehydogenase {Escher	9e-38
d1kf6b1	138	a.1.2.1 (B:106-243) Fumarate reductase {Escherichi	3e-37
d2bs2b2	106	d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur	2e-36
d2bs2b1	133	a.1.2.1 (B:107-239) Fumarate reductase {Wolinella	5e-36
d1nekb2	106	d.15.4.2 (B:1-106) Succinate dehydogenase iron-sul	2e-34

>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  130 bits (329), Expect = 3e-39
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 1/106 (0%)

Query: 43  ANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE 102
           A     K ++ R+NP+  + P    +E+   +    +LDAL  IK  + P L++R SCR 
Sbjct: 1   AEMKNLKIEVVRYNPEVDTAPHSAFYEVPY-DATTSLLDALGYIKDNLAPDLSYRWSCRM 59

Query: 103 GICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVD 148
            ICGSC M ++    LAC T +        +  L +  + +DLVVD
Sbjct: 60  AICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVD 105

>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 132

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score =  128 bits (321), Expect = 9e-38
 Identities = 68/131 (51%), Positives = 90/131 (68%), Gaps = 1/131 (0%)

Query: 149 MTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWT 208
           M  FY QY+ I+P+L      P P +E  Q  + R KLDG+YECILCACCSTSCPS+WW 
Sbjct: 1   MGQFYAQYEKIKPYLLNNGQNP-PAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWN 59

Query: 209 SEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQ 268
            + ++GPA LL A R++ DSRD  T  RL+ + D F ++RCH+I+NC   CPKGLNP + 
Sbjct: 60  PDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRA 119

Query: 269 IINIKQLQLKR 279
           I +IK + L+R
Sbjct: 120 IGHIKSMLLQR 130

>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 138

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score =  126 bits (318), Expect = 3e-37
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 149 MTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWT 208
           MT+F    ++I+P++   +          Q+    AK      CI C  C  +CP +   
Sbjct: 1   MTHFIESLEAIKPYIIGNSRTA-DQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLN 59

Query: 209 SEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQ 268
            E ++GPAA+  A+R+  DSRD   KER+  ++ +  ++ C  +  C+  CPK ++P   
Sbjct: 60  PE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAA 118

Query: 269 IINIKQLQLKR 279
           I   K    K 
Sbjct: 119 IQQGKVESSKD 129

>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]} Length = 106

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Wolinella succinogenes [TaxId: 844]

 Score =  123 bits (310), Expect = 2e-36
 Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 47  TKKFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGIC 105
               ++++++P S  SKP  +E++I  +     +   L  I+   DP L F   CR GIC
Sbjct: 4   MLTIRVFKYDPQSAVSKPHFQEYKIE-EAPSMTIFIVLNMIRETYDPDLNFDFVCRAGIC 62

Query: 106 GSCAMNIDGCNGLACLTKISP-SGSASTITPLPHMFVIKDLVVD 148
           GSC M I+G   LAC T          T+ PLP   +IKDL VD
Sbjct: 63  GSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVD 106

>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 133

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score =  123 bits (309), Expect = 5e-36
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%)

Query: 152 FYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEA 211
           F    + +E W+  +    +   E     +   ++  +  CI C CC  +C +     + 
Sbjct: 5   FNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMRED- 63

Query: 212 YLGPAALLHANRWISDSRDEYTKER-LEAIDDEFKLYRCHTILNCARACPKGLNPGKQII 270
           ++G A L    R++ D  DE T E   E I D+  ++ C T+L C   CPK L    +I 
Sbjct: 64  FVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIA 123

Query: 271 NIKQLQLKR 279
            +++  +  
Sbjct: 124 YLRRKMVSV 132

>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 106

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Succinate dehydogenase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  118 bits (297), Expect = 2e-34
 Identities = 53/104 (50%), Positives = 72/104 (69%), Gaps = 5/104 (4%)

Query: 49  KFQIYRWNPDSPSKPELKEFEINLKECGPM-VLDALIKIKSEIDPSLTFRRSCREGICGS 107
           +F IYR+NPD    P ++++ +   E   M +LDALI++K + DPSL+FRRSCREG+CGS
Sbjct: 4   EFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEK-DPSLSFRRSCREGVCGS 62

Query: 108 CAMNIDGCNGLACLTKISP---SGSASTITPLPHMFVIKDLVVD 148
             +N++G NGLAC+T IS     G    I PLP + VI+DLVVD
Sbjct: 63  DGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVD 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1kf6b2	105	Fumarate reductase iron-sulfur protein, N-terminal	100.0
d2bs2b2	106	Fumarate reductase iron-sulfur protein, N-terminal	100.0
d1nekb2	106	Succinate dehydogenase iron-sulfur protein, N-term	100.0
d1nekb1	132	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.95
d1kf6b1	138	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.95
d2bs2b1	133	Fumarate reductase {Wolinella succinogenes [TaxId:	99.9
d1rm6c2	81	4-hydroxybenzoyl-CoA reductase gamma subunit HrcC,	99.3
d1t3qa2	81	Quinoline 2-oxidoreductase small subunit QorS, N-d	99.3
d1ffva2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	99.26
d3c8ya2	126	Fe-only hydrogenase, N-terminal domain {Clostridiu	99.26
d1vlba2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	99.2
d1n62a2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	99.18
d1dgja2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	99.17
d1jroa2	84	Xanthine dehydrogenase chain A, N-terminal domain	98.9
d2fug33	95	Nadh-quinone oxidoreductase chain 3, Nqo3, N-termi	98.79
d1v97a2	90	Xanthine oxidase, N-terminal domain {Cow (Bos taur	98.66
d2fug34	151	NADH-quinone oxidoreductase chain 3, Nqo3, domain	98.54
d3c8ya3	83	Fe-only hydrogenase, second domain {Clostridium pa	98.39
d2c42a5	117	Pyruvate-ferredoxin oxidoreductase, PFOR, domain V	98.3
d1czpa_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	98.2
d1hfel2	85	Fe-only hydrogenase larger subunit, N-domain {Desu	98.17
d1jb0c_	80	Photosystem I iron-sulfur protein PsaC {Synechococ	98.12
d1a70a_	97	2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [Ta	98.07
d2fug91	154	NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus	98.06
d1frda_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	97.98
d1dura_	55	Ferredoxin II {Peptostreptococcus asaccharolyticus	97.98
d1xera_	103	Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	97.98
d2fdna_	55	Ferredoxin II {Clostridium acidurici [TaxId: 1556]	97.95
d1jq4a_	98	Methane monooxygenase reductase N-terminal domain	97.95
d2piaa3	98	Phthalate dioxygenase reductase, C-terminal domain	97.92
d1frra_	95	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	97.83
d1awda_	94	2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}	97.81
d1iuea_	98	2Fe-2S ferredoxin {Malaria parasite (Plasmodium fa	97.81
d1e9ma_	106	2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredo	97.73
d1l5pa_	93	2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5	97.73
d1krha3	104	Benzoate dioxygenase reductase, N-terminal domain	97.72
d1rgva_	80	Ferredoxin II {Thauera aromatica [TaxId: 59405]}	97.67
d2bt6a1	104	Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}	97.66
d1sj1a_	66	Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI	97.62
d1doia_	128	2Fe-2S ferredoxin {Archaeon Haloarcula marismortui	97.61
d1blua_	80	Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	97.61
d1fxra_	64	Ferredoxin I {Sulfate-reducing bacteria (Desulfovi	97.58
d1wria_	93	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	97.57
d1xlqa1	106	2Fe-2S ferredoxin {Pseudomonas putida, putidaredox	97.56
d1bc6a_	77	Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	97.55
d1vjwa_	59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	97.5
d1i7ha_	109	Adrenodoxin-like ferredoxin {Escherichia coli [Tax	97.49
d1gtea5	173	Dihydropyrimidine dehydrogenase, C-terminal domain	97.49
d1b9ra_	105	2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [T	97.46
d1h98a_	77	Ferredoxin {Thermus thermophilus [TaxId: 274]}	97.45
d1fxda_	58	Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	97.26
d7fd1a_	106	Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	97.09
d1jnrb_	149	Adenylylsulfate reductase B subunit {Archaeon Arch	97.02
d1iqza_	81	Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1	96.67
d1kqfb1	244	Formate dehydrogenase N, iron-sulfur (beta) subuni	96.2
d3c7bb1	65	DsrB insert domain {Archaeoglobus fulgidus [TaxId:	95.67
d1vlfn2	195	Transhydroxylase beta subunit, BthL, N-terminal do	95.33
d1y5ib1	509	Respiratory nitrate reductase 1 beta chain {Escher	95.0
d1h0hb_	214	Tungsten containing formate dehydrogenase, small s	94.35
d1kqfb1	244	Formate dehydrogenase N, iron-sulfur (beta) subuni	94.02
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	93.26
d3c7bb1	65	DsrB insert domain {Archaeoglobus fulgidus [TaxId:	92.46
d1hfel2	85	Fe-only hydrogenase larger subunit, N-domain {Desu	91.9
d1y5ib1	509	Respiratory nitrate reductase 1 beta chain {Escher	91.57
d1blua_	80	Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	91.34
d2fdna_	55	Ferredoxin II {Clostridium acidurici [TaxId: 1556]	91.05
d1rgva_	80	Ferredoxin II {Thauera aromatica [TaxId: 59405]}	90.76
d1jb0c_	80	Photosystem I iron-sulfur protein PsaC {Synechococ	90.63
d1dura_	55	Ferredoxin II {Peptostreptococcus asaccharolyticus	90.21
d1xera_	103	Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	89.88
d7fd1a_	106	Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	89.8
d1h98a_	77	Ferredoxin {Thermus thermophilus [TaxId: 274]}	88.82
d2c42a5	117	Pyruvate-ferredoxin oxidoreductase, PFOR, domain V	88.68
d2fug91	154	NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus	87.66
d3c8ya3	83	Fe-only hydrogenase, second domain {Clostridium pa	87.42
d2v4jb1	69	DsrB insert domain {Desulfovibrio vulgaris [TaxId:	86.85
d1nekb1	132	Succinate dehydogenase {Escherichia coli [TaxId: 5	86.42
d1bc6a_	77	Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	85.52
d1vjwa_	59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	85.49
d1gtea1	182	Dihydropyrimidine dehydrogenase, N-terminal domain	84.76
d2bs2b1	133	Fumarate reductase {Wolinella succinogenes [TaxId:	84.47
d1kf6b1	138	Fumarate reductase {Escherichia coli [TaxId: 562]}	84.21
d1fxda_	58	Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	83.1
d1sj1a_	66	Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI	83.01
d2v4jb1	69	DsrB insert domain {Desulfovibrio vulgaris [TaxId:	82.63
d1gtea5	173	Dihydropyrimidine dehydrogenase, C-terminal domain	82.27
d1jnrb_	149	Adenylylsulfate reductase B subunit {Archaeon Arch	81.25

>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.7e-39  Score=250.17  Aligned_cols=103  Identities=33%  Similarity=0.599  Sum_probs=99.1

Q ss_pred             CceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccc
Q 023670           45 TDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKI  124 (279)
Q Consensus        45 ~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v  124 (279)
                      -++++|+||||||+.+.+||||+|+|++++ ++||||||.+|+.++||+|+||+||++|+||+|+|+|||+++|||+|++
T Consensus         3 ~~~i~~~i~R~dp~~~~~~~~~~y~v~~~~-~~tvLd~L~~Ik~~~d~sLsfr~sCr~giCGsCam~ING~~~LAC~t~v   81 (105)
T d1kf6b2           3 MKNLKIEVVRYNPEVDTAPHSAFYEVPYDA-TTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFL   81 (105)
T ss_dssp             CEEEEEEEEECCTTTCSSCEEEEEEEEECT-TCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEETTEEEEGGGCBG
T ss_pred             ccEEEEEEEEECCCCCCCCeeEEEEEecCC-CCcHHHHHHHHHHhcCCcceEEeccCCCCCCCCeEEECCcccccceeEe
Confidence            457999999999999999999999999998 8999999999998899999999999999999999999999999999999


Q ss_pred             cCCCCceEEeeCCCCcchhhhhhc
Q 023670          125 SPSGSASTITPLPHMFVIKDLVVD  148 (279)
Q Consensus       125 ~~g~~~~~iepl~~~~vikDLvvD  148 (279)
                      .+.++.++||||++|||||||+||
T Consensus        82 ~~~~~~i~iePl~~~pVikDLvVD  105 (105)
T d1kf6b2          82 RDYTDGMKVEALANFPIERDLVVD  105 (105)
T ss_dssp             GGCTTCEEEECCTTSCEEETTEEC
T ss_pred             eccCCCeEEEECCCCCccccCCcC
Confidence            988788999999999999999998

>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Wolinella succinogenes [TaxId: 844]

Probab=100.00  E-value=3.6e-38  Score=244.67  Aligned_cols=104  Identities=37%  Similarity=0.656  Sum_probs=97.6

Q ss_pred             CCceeEEEEEeeCCCCC-CCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccc
Q 023670           44 NTDTKKFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLT  122 (279)
Q Consensus        44 ~~~~~~~~i~R~~p~~~-~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t  122 (279)
                      +.++++|+||||||+++ .+||||+|+|++.+ ++||||||.+|++++||+|+||++||+|+||+|+|+|||+++|||+|
T Consensus         1 M~~~i~l~I~R~~p~~~~~~~~~~~y~v~~~~-~~tvld~L~~Ik~~~D~sl~fr~sCr~giCGsCam~ING~~~lAC~t   79 (106)
T d2bs2b2           1 MGRMLTIRVFKYDPQSAVSKPHFQEYKIEEAP-SMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRT   79 (106)
T ss_dssp             CCCEEEEEEEECCTTCTTCCCEEEEEEEECCT-TCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEETTEEEEGGGC
T ss_pred             CCcEEEEEEEEECCCCCCCCceEEEEEecCCC-CCcHHHHHHHHHHhcCCcEEEEeCcCCCCCCcceEEECCccccceee
Confidence            46789999999999887 68999999999988 89999999999999999999999999999999999999999999999


Q ss_pred             cccCC-CCceEEeeCCCCcchhhhhhc
Q 023670          123 KISPS-GSASTITPLPHMFVIKDLVVD  148 (279)
Q Consensus       123 ~v~~g-~~~~~iepl~~~~vikDLvvD  148 (279)
                      .+.+. ++.++||||++|||||||+||
T Consensus        80 ~v~~~~~~~i~iePl~~~pVIkDLvVD  106 (106)
T d2bs2b2          80 LTKDFEDGVITLLPLPAFKLIKDLSVD  106 (106)
T ss_dssp             BGGGCTTSEEEEECCTTSEEEETTEEE
T ss_pred             eeeccCCCeEEEEECCCCCccccCCcC
Confidence            99864 457899999999999999998

>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Succinate dehydogenase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8e-37  Score=237.59  Aligned_cols=101  Identities=53%  Similarity=0.968  Sum_probs=93.8

Q ss_pred             eeEEEEEeeCCCCCCCCceEEEEEeccC-CCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc
Q 023670           47 TKKFQIYRWNPDSPSKPELKEFEINLKE-CGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS  125 (279)
Q Consensus        47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~-~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~  125 (279)
                      +++|+||||||+.+++||||+|+|++++ .++|+|++|.+|+ ++||+|+||+|||+|+||+|+|+|||+++|||+|++.
T Consensus         2 kv~~~I~R~dp~~~~~~~~~~y~v~~~~~~~~~vl~~L~~i~-e~D~sLsfr~sCr~giCGsCam~ING~~~LAC~t~v~   80 (106)
T d1nekb2           2 RLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPIS   80 (106)
T ss_dssp             CCEEEEEECCTTTCSSCEEEEEECCCCSSSCCBHHHHHHHHH-HHCTTCCCCCCSSSSCSCTTEEEETTEEEETTSCBTT
T ss_pred             eEEEEEEEcCCCCCCCCEEEEEEEeecCCccHHHHHHHHHHh-ccCCCEEEEcCCCCCCCCcceEEEcCccccchheehh
Confidence            5899999999999999999999999876 2479999999998 5799999999999999999999999999999999998


Q ss_pred             C---CCCceEEeeCCCCcchhhhhhc
Q 023670          126 P---SGSASTITPLPHMFVIKDLVVD  148 (279)
Q Consensus       126 ~---g~~~~~iepl~~~~vikDLvvD  148 (279)
                      +   .+++++||||++||++|||+||
T Consensus        81 ~~~~~~~~i~IePL~~~pvikDLvVD  106 (106)
T d1nekb2          81 ALNQPGKKIVIRPLPGLPVIRDLVVD  106 (106)
T ss_dssp             TTCCTTSCEEEECCSSSBEEETTEEC
T ss_pred             HhhCCCCeEEEEECCCCCccccCCcC
Confidence            4   3578999999999999999998

>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=4.4e-29  Score=201.14  Aligned_cols=130  Identities=52%  Similarity=1.108  Sum_probs=115.2

Q ss_pred             cchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcC
Q 023670          149 MTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDS  228 (279)
Q Consensus       149 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~  228 (279)
                      +++||++|+.++||+..+...+ .++|.+|++++++.++++.+||+||.|+++||++..++..+.+|+.+..+++++.++
T Consensus         1 m~~f~~~~~~v~P~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~~p~~~~~~~~~~~~~   79 (132)
T d1nekb1           1 MGQFYAQYEKIKPYLLNNGQNP-PAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDS   79 (132)
T ss_dssp             CHHHHHHHHHTCCSCCCCCCSC-CSSSCCCCHHHHHTTTTTSCCCCCCHHHHTCHHHHHCTTTSCCHHHHHHHHHHHTCT
T ss_pred             CcHHHHHHHhccCcccCCCCCC-CccccccCHHHHHHHHhhHHHhHhhhhhhhCccccccCccccchhHHHHHHHHHhcc
Confidence            4789999999999999766554 578999999999999999999999999999999987767789999999988888888


Q ss_pred             cchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHhC
Q 023670          229 RDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR  279 (279)
Q Consensus       229 r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~~  279 (279)
                      ++....+++..+....++|.|++||+|+++||+||++.++|..||+++++|
T Consensus        80 ~~~~~~~~~~~~~~~~gi~~C~~C~~C~~vCP~gI~~~~~I~~lR~~~~~r  130 (132)
T d1nekb1          80 RDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQR  130 (132)
T ss_dssp             TCCCHHHHHHTTCSSSTTTTCCCCCHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhccchhhhCcCcccccccCcCCCCHHHHHHHHHHHHHHh
Confidence            877666666656666799999999999999999999999999999999875

>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.6e-28  Score=199.44  Aligned_cols=128  Identities=28%  Similarity=0.547  Sum_probs=114.1

Q ss_pred             cchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcC
Q 023670          149 MTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDS  228 (279)
Q Consensus       149 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~  228 (279)
                      +++|++++++++||+..+.... +..+.++++++...++.+.+||+||.|+++||++.++ ++|+||+.+.++++++.++
T Consensus         1 m~~f~~~~~~i~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~-~~~~gp~~~~~~~r~~~d~   78 (138)
T d1kf6b1           1 MTHFIESLEAIKPYIIGNSRTA-DQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLN-PEFIGPAAITLAHRYNEDS   78 (138)
T ss_dssp             CHHHHHHHHHTCCSCCSCCCCG-GGCCCCCCHHHHHTTGGGGCCCCCCHHHHHCHHHHHC-TTSCCHHHHHHHHHHHTCT
T ss_pred             ChHHHHHHHhccceeeCCCCCC-CcccccchHHHHhhHHHHHHHHHhChhhccCccchhh-hhhhhHHHHHHHHHhccCc
Confidence            4689999999999999765433 4677889999999999999999999999999998765 5799999999999999999


Q ss_pred             cchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670          229 RDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK  278 (279)
Q Consensus       229 r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~  278 (279)
                      ++....+++..+.++.++|.|++||+|+++||+||++.++|.+||+++++
T Consensus        79 rd~~~~~rl~~l~~~~g~~~C~~C~~C~~~CP~gI~~~~~I~~lr~~~~k  128 (138)
T d1kf6b1          79 RDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSK  128 (138)
T ss_dssp             TCCCTHHHHHHHHSTTTGGGCCCCCHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred             chhhhhhhHHHhhcccccccCchhCcccccCCCCCCHHHHHHHHHHHHHH
Confidence            98877788887777789999999999999999999999999999998875

>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.90  E-value=6.2e-25  Score=176.54  Aligned_cols=129  Identities=24%  Similarity=0.483  Sum_probs=108.3

Q ss_pred             chhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCc
Q 023670          150 TNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSR  229 (279)
Q Consensus       150 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r  229 (279)
                      +.|++.++.++||+..+........+.++++++.+.++++.+||+||.|+.+||++... +.|+||+.+.++.++..+++
T Consensus         3 ~~~~~~~~~~~~wi~~~~~~~~~~~e~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~~-~~~~~~~~~~~~~~~~~~~~   81 (133)
T d2bs2b1           3 NWFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVRFMIDPH   81 (133)
T ss_dssp             HHHHHHHHHTTCSCCCSSCCCTTSCCCCCCHHHHHHHHHHHTCCCCCHHHHTCHHHHHC-TTCCHHHHHHHHHHHHTCTT
T ss_pred             hHHHHHHHhhcccccCCCCCCCChhhccCCHHHHHHHHhHHHHhhhhhHHHhCCccccC-CCccchHHHHHHHHHhhcch
Confidence            45778889999999876544334667889999999999999999999999999998764 57999999999888888887


Q ss_pred             chhHHHHHH-HhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHhC
Q 023670          230 DEYTKERLE-AIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR  279 (279)
Q Consensus       230 ~~~~~erl~-~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~~  279 (279)
                      +....++.. .+....++|.|++||+|+.+||+||++.++|..||++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~Ct~Cg~C~~vCP~gI~~~~~I~~lRr~lv~~  132 (133)
T d2bs2b1          82 DERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMVSV  132 (133)
T ss_dssp             CCCCHHHHHHHHCSTTTGGGCCCCCHHHHHCTTCCCHHHHHHHHHHHHTTC
T ss_pred             hhhhHHHHHHHhhccccchhChhhCCCcccCcCCCChHHHHHHHHHHHHhc
Confidence            765555443 34455689999999999999999999999999999999975

>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain
species: Thauera aromatica [TaxId: 59405]

Probab=99.30  E-value=1.6e-12  Score=94.65  Aligned_cols=67  Identities=24%  Similarity=0.407  Sum_probs=54.6

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLP  137 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~  137 (279)
                      +.+++++++ +++|||+||+...    -...+.+|..|.||+|+|.|||+++.||.+++.  +|.+..+||.|.
T Consensus        12 ~~~~~~v~~-~~~Ll~~LR~~lg----ltgtK~gC~~G~CGACTVlvdG~~v~sC~~~~~~~~g~~I~TvEgL~   80 (81)
T d1rm6c2          12 RAREDLVPD-NMLLLDYLRETVG----LTGTKQGCDGGECGACTVLVDDRPRLACSTLAHQVAGKKVETVESLA   80 (81)
T ss_dssp             EEEEEEEET-TCBHHHHHHHTTC----CTTSCCCSSSSSSCTTEEEETTEEEEGGGSBGGGGTTSEEECGGGSS
T ss_pred             EEEEEecCC-CCCHHHHHHHhhC----CcccccCCccccCCccEEeECCceEeehHhhHHHcCCCEEEEeCcCc
Confidence            455677777 8999999997421    245788999999999999999999999999998  566666777664

>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Quinoline 2-oxidoreductase small subunit QorS, N-domain
species: Pseudomonas putida [TaxId: 303]

Probab=99.30  E-value=1.1e-12  Score=95.46  Aligned_cols=66  Identities=29%  Similarity=0.447  Sum_probs=55.7

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPL  136 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl  136 (279)
                      +.|++++++ +++|||+||+...    -...+.+|..|.||+|+|.|||+++.||.+++.  +|.+..+||.|
T Consensus        13 ~~~~~~~~~-~~~Ll~~LR~~l~----ltg~K~gC~~G~CGACtVlvdG~~v~sCl~~~~~~~g~~V~TiEGL   80 (81)
T d1t3qa2          13 KPRVFYVEP-RMHLADALREVVG----LTGTKIGCEQGVCGSCTILIDGAPMRSCLTLAVQAEGCSIETVEGL   80 (81)
T ss_dssp             EEEEEEECT-TSBHHHHHHHTTC----CTTSCCSCSSSSSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGT
T ss_pred             EEEEEecCC-CCCHHHHHhhhhC----CcccccCCCCcccCeeEEEECCCEEeehhheHhhcCCCEEEEeccC
Confidence            677888888 8999999997431    235788999999999999999999999999998  67777778765

>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Hydrogenophaga pseudoflava [TaxId: 47421]

Probab=99.26  E-value=4.7e-12  Score=91.69  Aligned_cols=66  Identities=20%  Similarity=0.338  Sum_probs=54.9

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPL  136 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl  136 (279)
                      +.|++++++ +++|||+||+...    -...+.+|..|.||+|+|.|||+++.||.+++.  +|.+..+||.|
T Consensus        11 ~~~~~~v~~-~~~Ll~~LR~~~g----l~gtK~GC~~G~CGaCTVlvdg~~v~SCl~~~~~~~g~~I~TiEGL   78 (79)
T d1ffva2          11 KAQEKAVEP-RTLLIHFLREELN----LTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGL   78 (79)
T ss_dssp             EEEEEEECT-TCBHHHHHHHTSC----CTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGT
T ss_pred             EEEEEeCCC-CCCHHHHHhhhcC----CcccccCCccccccccEEecCCcEEEEehhhHHHcCCCEEEEeccC
Confidence            557788888 8999999998431    245788999999999999999999999999998  56666677765

>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, N-terminal domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=99.26  E-value=6.2e-13  Score=104.79  Aligned_cols=56  Identities=23%  Similarity=0.340  Sum_probs=49.4

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCC--CCCccCeeEEEECCe-eeccccccccCC
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSC--REGICGSCAMNIDGC-NGLACLTKISPS  127 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c--~~g~CG~C~v~inG~-~~lAC~t~v~~g  127 (279)
                      |++++ |+|||+|++++| .++|+|||+.+.  ..|.|+.|.|+|+|+ .+.||+|++.+|
T Consensus        11 v~~~~-G~til~aa~~~g-i~IP~lC~~~~l~~~~G~Cr~C~Vev~G~~~v~AC~t~v~~G   69 (126)
T d3c8ya2          11 FNTDE-DTTILKFARDNN-IDISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDG   69 (126)
T ss_dssp             EEECC-CCBHHHHHHHTT-CCCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTT
T ss_pred             EEeCC-CChHHHHHHHcC-CccchhhhccCCCCCCccceeEEEEEccCccccccccCCCCC
Confidence            45557 999999999999 579999999986  359999999999996 678999999997

>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=99.20  E-value=4.7e-12  Score=91.81  Aligned_cols=66  Identities=24%  Similarity=0.451  Sum_probs=53.0

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc---CCCCceEEeeC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS---PSGSASTITPL  136 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~---~g~~~~~iepl  136 (279)
                      +.+++++++ +++|||+||+...    -...+.+|..|.||+|+|.|||+++.||.+++.   +|.+..+||.|
T Consensus        11 ~~~~~~v~~-~~~Lld~LR~~lg----ltg~K~gC~~G~CGACtVlvdG~~v~SCl~~~~~~adG~~I~TiEGL   79 (80)
T d1vlba2          11 IEQNLFVDA-EALLSDVLRQQLG----LTGVKVGCEQGQCGACSVILDGKVVRACVTKMKRVADGAQITTIEGV   79 (80)
T ss_dssp             EEEEEEECT-TSBHHHHHHHTTC----CTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECHHHH
T ss_pred             EEEEEecCC-CCCHHHHHhHhhC----CcccccCcCcCCCCeeEEEECCcEEechhhhHHHHcCCCEEEEcCcC
Confidence            667788888 8999999997431    245788999999999999999999999999765   45555566653

>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]

Probab=99.18  E-value=1.1e-11  Score=89.79  Aligned_cols=66  Identities=17%  Similarity=0.356  Sum_probs=54.5

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPL  136 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl  136 (279)
                      +.+++++++ +++|||+||+...    -...+.+|..|.||+|+|.|||+++.||.+++.  +|.+..+||.|
T Consensus        11 ~~~~~~v~p-~~~Ll~~LR~~~~----ltgtK~GC~~G~CGaCTVlvdg~~v~SCl~~~~~~~g~~I~TvEGL   78 (79)
T d1n62a2          11 HPVEALVEP-RTLLIHFIREQQN----LTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGM   78 (79)
T ss_dssp             EEEEEEECT-TCBHHHHHHHTSC----CTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGS
T ss_pred             EEEEEecCC-CCcHHHHHhhhcC----CcccccCCccccccccEEEeCCcEEeeeheEHHhcCCCEEEEeCcC
Confidence            556777888 8999999997431    346888999999999999999999999999998  56666677765

>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=99.17  E-value=6.8e-12  Score=90.97  Aligned_cols=65  Identities=23%  Similarity=0.471  Sum_probs=51.2

Q ss_pred             EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc---CCCCceEEeeC
Q 023670           67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS---PSGSASTITPL  136 (279)
Q Consensus        67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~---~g~~~~~iepl  136 (279)
                      .+++++++ +++|||+||+...    -...+.+|..|.||+|+|.|||+++.||.+++.   +|.+..+||.|
T Consensus        12 ~~~~~v~p-~~~Ll~~LR~~~g----ltgtK~GC~~G~CGACtV~vdG~~v~SC~~~la~~a~G~~I~TiEGL   79 (80)
T d1dgja2          12 ARRLLVSP-NDLLVDVLRSQLQ----LTSVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGI   79 (80)
T ss_dssp             CCEEEECT-TCBHHHHHHHTTC----CTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECGGGT
T ss_pred             EEEEEcCC-CCCHHHHHhhhhC----CceeccCCCCCCCCeeEEEECCeEEechhhhHHHHcCCCEEEEcCcC
Confidence            34566777 8999999997431    245788999999999999999999999999765   45556677755

>d1jroa2 d.15.4.2 (A:1-84) Xanthine dehydrogenase chain A, N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine dehydrogenase chain A, N-terminal domain
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=98.90  E-value=5.4e-10  Score=81.55  Aligned_cols=67  Identities=21%  Similarity=0.372  Sum_probs=54.7

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC----Ceeecccccccc--CCCCceEEeeCC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID----GCNGLACLTKIS--PSGSASTITPLP  137 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in----G~~~lAC~t~v~--~g~~~~~iepl~  137 (279)
                      +.++++..+.+++||++||+.+     -...+.+|..|.||+|+|.||    |+++.||.+++.  +|.+..+||.|.
T Consensus        10 ~~~~~~~~~~~~~Ll~~LR~~~-----ltgtK~GC~~G~CGACtVlvd~~~~g~~v~SCl~~~~~~~g~~v~TvEGL~   82 (84)
T d1jroa2          10 ETRRVRIEDPTQSLLELLRAEG-----LTGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGIA   82 (84)
T ss_dssp             EEEEEECSCTTCBHHHHHHHTT-----CTTSCCSCSSSSSCTTEEEEEETTEEEEEETTTCBGGGGTTCEEECGGGSS
T ss_pred             EEEEEEcCCCCCcHHHHHHHCC-----CccCccCcCCcccceeEEEEEeCCCCEEEecHHHHHHHhCCCEEEEeCccc
Confidence            6777776433799999999863     245788999999999999999    889999999998  566667788764

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.79  E-value=3.5e-09  Score=78.64  Aligned_cols=56  Identities=20%  Similarity=0.352  Sum_probs=45.7

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECC-----------------------eeecccccccc
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDG-----------------------CNGLACLTKIS  125 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG-----------------------~~~lAC~t~v~  125 (279)
                      |++++ |.|||||++++|. .+|++|++.+| +.|.||+|.|+|.+                       +.+|||+|++.
T Consensus        11 ~~v~~-g~tll~a~~~~gi-~ip~~C~~~~~~~~G~C~~C~V~v~~g~~~~~~~~~~~~~~~~~~~~~~~~rlaCqt~v~   88 (95)
T d2fug33          11 VEVPP-GTSVMDAVFHAGY-DVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASCVTAVA   88 (95)
T ss_dssp             EEECT-TCBHHHHHHHHTC-CCCCCSCCTTSCCCSCSTTSEEEEEC------------------CCBCSSCEETTTCBCC
T ss_pred             EEECC-CCcHHHHHHhcCC-CCCccccCCCcCcccccCCCEEEEccCccccCcccchhhhhhhHhhcCCCccCcCcCCCC
Confidence            45567 8999999999995 68999988875 67999999999843                       23579999998


Q ss_pred             CC
Q 023670          126 PS  127 (279)
Q Consensus       126 ~g  127 (279)
                      +|
T Consensus        89 ~g   90 (95)
T d2fug33          89 DG   90 (95)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine oxidase, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.66  E-value=6.8e-09  Score=76.57  Aligned_cols=66  Identities=23%  Similarity=0.365  Sum_probs=51.2

Q ss_pred             EEEEE-eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCe----------eecccccccc--CCCCceE
Q 023670           66 KEFEI-NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGC----------NGLACLTKIS--PSGSAST  132 (279)
Q Consensus        66 ~~~~v-~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~----------~~lAC~t~v~--~g~~~~~  132 (279)
                      +.+.+ ++++ .+||||.||+...    --..+.+|.+|.||+|+|.|||.          ++-||.+++.  +|.+.++
T Consensus        11 ~~~~~~~~~p-~~tLl~~LR~~~~----ltGtK~GC~~G~CGACTVlv~~~~~~~~~~~~~~vnSCl~~~~~~~g~~v~T   85 (90)
T d1v97a2          11 KKVVEKNADP-ETTLLAYLRRKLG----LRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTT   85 (90)
T ss_dssp             EEEEETTCCT-TCBHHHHHHHTSC----CTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTCEEEC
T ss_pred             EEEEEccCCC-CCCHHHHHHhhcC----CCccccCcCCcccceeEEEEccccccCCceeeeeeeehHhhHHHcCCCEEEE
Confidence            45555 4566 7999999997531    24578899999999999999985          5679999998  6666777


Q ss_pred             EeeC
Q 023670          133 ITPL  136 (279)
Q Consensus       133 iepl  136 (279)
                      ||.|
T Consensus        86 iEGL   89 (90)
T d1v97a2          86 VEGI   89 (90)
T ss_dssp             GGGT
T ss_pred             eCcC
Confidence            7755

>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: NADH-quinone oxidoreductase chain 3, Nqo3, domain 2
species: Thermus thermophilus [TaxId: 274]

Probab=98.54  E-value=2.8e-09  Score=86.09  Aligned_cols=62  Identities=16%  Similarity=0.045  Sum_probs=40.1

Q ss_pred             hhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          184 AKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       184 ~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....+.++||.||+|+++|+..+..+  .++           ..+|+..  .++   ........|..||+|+.+||+|+
T Consensus        78 ~i~~d~~kCI~C~rCvr~C~ev~g~~--~l~-----------~~~rG~~--~~i---~~~~~~~~c~~cG~Cv~vCPtGA  139 (151)
T d2fug34          78 FVILDRERCIHCKRCVRYFEEVPGDE--VLD-----------FIERGVH--TFI---GTMDFGLPSGFSGNITDICPVGA  139 (151)
T ss_dssp             SSCEECSCCCCCCHHHHHHHHTTCCC--CCC-----------CBSCGGG--CBC---CCSSTTCCSSCCTHHHHHCSSSS
T ss_pred             eEEecCCCCCcCchHHhhhhhccCCc--eEE-----------Eeccccc--eEE---ccCCCCCCChhhcCHHhcCcccc
Confidence            45678999999999999998665321  111           1123221  111   11112357999999999999998

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, second domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=98.39  E-value=1.2e-09  Score=79.31  Aligned_cols=64  Identities=19%  Similarity=0.374  Sum_probs=37.5

Q ss_pred             hhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHH-HhhcccCccCchhhhhhhhhCCCCC
Q 023670          185 KLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLE-AIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~-~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+.+.++||.||+|+.+||.......  .+         +...+...    ++. ..........|+.||+|+++||+|+
T Consensus        14 i~iD~~kCI~C~~Cv~aCp~~~~~~~--~~---------~~~~~~~~----~~~~~~~~~~~~~~C~~Cg~Cv~vCP~gA   78 (83)
T d3c8ya3          14 LTVDRTKCLLCGRCVNACGKNTETYA--MK---------FLNKNGKT----IIGAEDEKCFDDTNCLLCGQCIIACPVAA   78 (83)
T ss_dssp             EEEEGGGCCCCCHHHHHHHHHHSCCC--SE---------EEEETTEE----EEESGGGCCGGGSSCCCCCHHHHHCSSTT
T ss_pred             EEEchhHCCCCchHHHhhcccccccc--ee---------eeccccce----EEcccccccccccccccCCHHHhhCCCCc
Confidence            45678999999999999996432110  00         00000000    000 0011123457999999999999996

>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain V
species: Desulfovibrio africanus [TaxId: 873]

Probab=98.30  E-value=3e-09  Score=82.05  Aligned_cols=75  Identities=23%  Similarity=0.302  Sum_probs=38.0

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHh--hcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAI--DDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l--~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+.++||.||.|+.+||...... ..+.+..+...... ....+....+ ....  .-....+.|+.||.|+.+||++.
T Consensus        15 v~d~~~Ci~Cg~C~~vCP~~~i~~-~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~i~~~~C~~CG~C~~~CP~~~   91 (117)
T d2c42a5          15 QWVPENCIQCNQCAFVCPHSAILP-VLAKEEELVGAPAN-FTALEAKGKE-LKGYKFRIQINTLDCMGCGNCADICPPKE   91 (117)
T ss_dssp             EECTTTCCCCCHHHHHCSSCCEEE-EEECGGGGTTCCTT-CCCEECCSGG-GTTCEEEEEECTTTCCCCCHHHHHCSSSS
T ss_pred             EeCchhcCCCcChhhhCchhheee-eecCHHHhhhhhhh-cccccccccc-ccccceeeeeccccCCccCchhhhcCCCc
Confidence            446789999999999999654321 11111000000000 0000000000 0000  01124678999999999999984

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=98.20  E-value=1.4e-06  Score=64.81  Aligned_cols=41  Identities=29%  Similarity=0.508  Sum_probs=33.3

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID  113 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in  113 (279)
                      +..+|++++ |.||||+|.++|. .     ...+|+.|+||+|.+.|.
T Consensus        14 ~~~~~~v~~-~~slL~a~~~~Gi-~-----ip~~C~~G~CgtC~~~v~   54 (98)
T d1czpa_          14 TKHEIEVPD-DEYILDAAEEQGY-D-----LPFSCRAGACSTCAGKLV   54 (98)
T ss_dssp             EEEEEEEET-TSCHHHHHHHTTC-C-----CCCSSSSSSSSTTEEEEE
T ss_pred             CEEEEEeCc-CChHHHHHHHcCC-C-----eEEecCCcccCCCeeEEe
Confidence            455667777 8999999999983 2     447899999999999864

>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase larger subunit, N-domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=98.17  E-value=1.8e-07  Score=68.00  Aligned_cols=50  Identities=22%  Similarity=0.456  Sum_probs=34.3

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +.++||.||.|+.+||.....               +  +....         ........|+.||.|+.+||+++
T Consensus        30 d~~~Ci~C~~Cv~~Cp~~ai~---------------~--~~~~~---------~~~~~~~~C~~Cg~C~~~CP~~A   79 (85)
T d1hfel2          30 DEAKCIGCDTCSQYCPTAAIF---------------G--EMGEP---------HSIPHIEACINCGQCLTHCPENA   79 (85)
T ss_dssp             CTTTCCCCCHHHHHCTTCCCB---------------C--CTTSC---------CBCCCGGGCCCCCTTGGGCTTCC
T ss_pred             cHHHCCCchhHHHHCCccCEE---------------e--ecCCc---------eEeCChhHCCCcChhhhhCCccc
Confidence            578999999999999964321               0  00000         00113467999999999999986

>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Photosystem I iron-sulfur protein PsaC
species: Synechococcus elongatus [TaxId: 32046]

Probab=98.12  E-value=5.9e-08  Score=69.67  Aligned_cols=57  Identities=21%  Similarity=0.383  Sum_probs=35.3

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...++||.||.|+.+||.......               .+.....     ...........|+.||.|+.+||+++
T Consensus         5 ~~~d~Ci~Cg~Cv~~Cp~~~i~~~---------------~~~~~~~-----~~~~~~~~~~~C~~Cg~C~~~CP~~A   61 (80)
T d1jb0c_           5 KIYDTCIGCTQCVRACPTDVLEMV---------------PWDGCKA-----GQIASSPRTEDCVGCKRCETACPTDF   61 (80)
T ss_dssp             EEETTCCCCCHHHHHCTTCCCEEE---------------ECSSSTT-----SEEEECTTGGGCCCCCHHHHHCCSSS
T ss_pred             ccCCCCcCccCHHHhCCccceEee---------------ccccccc-----cccceecchhhCcCCCCccccCCCCC
Confidence            346799999999999997542100               0000000     00001123467999999999999986

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.07  E-value=4.7e-06  Score=61.68  Aligned_cols=40  Identities=33%  Similarity=0.529  Sum_probs=31.7

Q ss_pred             EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670           68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG  114 (279)
Q Consensus        68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG  114 (279)
                      .+|++++ |.||||++++.|. .     ..++|+.|.||+|.|.| +|
T Consensus        14 ~~~~~~~-g~tlL~a~~~~Gi-~-----i~~~C~~G~CgtC~~~v~~G   54 (97)
T d1a70a_          14 VEFQCPD-DVYILDAAEEEGI-D-----LPYSCRAGSCSSCAGKLKTG   54 (97)
T ss_dssp             EEEEEET-TSCHHHHHHHTTC-C-----CCCSSSSSCSSTTEEEEEES
T ss_pred             EEEEeCC-CchHHHHHHHcCC-C-----eeeCCCcEEcCCCEeEeecC
Confidence            3456667 8999999999984 2     33689999999999975 56

>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: NADH-quinone oxidoreductase chain 9, Nqo9
species: Thermus thermophilus [TaxId: 274]

Probab=98.06  E-value=2.5e-08  Score=80.35  Aligned_cols=64  Identities=31%  Similarity=0.554  Sum_probs=35.7

Q ss_pred             ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +..+||.||.|+.+||..........+.        ........   .+. ...-......|++||.|+++||+++
T Consensus        24 ~~ekCI~C~~C~~~CP~~~i~~~~~~~~--------~~~~~~~~---~~~-~~~~~id~~~C~~CG~Cve~CPt~A   87 (154)
T d2fug91          24 GLEKCIGCSLCAAACPAYAIYVEPAEND--------PENPVSAG---ERY-AKVYEINMLRCIFCGLCEEACPTGA   87 (154)
T ss_dssp             SCBSCCCCTHHHHHCSSCCEEEEEEECC--------SSSCSBSS---SEE-EEEEEEETTTCCCCTHHHHHCSSSC
T ss_pred             CcccCcCCCcHHhhcCCcceeccccccc--------cccccccc---ccc-ceeEEeccccCCCCCCchhhCCCCe
Confidence            5679999999999999754210000000        00000000   000 0001224578999999999999986

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=97.98  E-value=4.1e-06  Score=62.04  Aligned_cols=40  Identities=25%  Similarity=0.445  Sum_probs=32.1

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI  112 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i  112 (279)
                      ...+|++++ |.||||||++.|. .     ...+|+.|.||+|.+.|
T Consensus        14 ~~~ti~v~~-g~siLdaa~~~Gi-~-----i~~~C~~G~CgtC~~~v   53 (98)
T d1frda_          14 IDTTIEIDE-ETTILDGAEENGI-E-----LPFSCHSGSCSSCVGKV   53 (98)
T ss_dssp             EEEEEEEET-TSCHHHHHHHTTC-C-----CCCSSSSSSSSTTEEEE
T ss_pred             ceEEEEeCC-CChHHHHHHHcCC-C-----EEEecCCCeeCCCEEEe
Confidence            344566667 8999999999983 2     45789999999999986

>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Peptostreptococcus asaccharolyticus [TaxId: 1258]

Probab=97.98  E-value=1.2e-06  Score=58.17  Aligned_cols=46  Identities=26%  Similarity=0.597  Sum_probs=33.0

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .++|+.||.|+.+||......                  ...         .  ......|+.||.|+.+||+++
T Consensus         5 ~d~C~~C~~C~~~CP~~ai~~------------------~~~---------~--~i~~~~C~~Cg~C~~~CP~~A   50 (55)
T d1dura_           5 NDSCIACGACKPECPVNCIQE------------------GSI---------Y--AIDADSCIDCGSCASVCPVGA   50 (55)
T ss_dssp             CTTCCCCCCSGGGCTTCCEEC------------------SSS---------C--EECTTTCCCCCHHHHHCTTCC
T ss_pred             CccCcChhHHHhhCCcCeEeC------------------Cce---------e--EEChhHCcCCCChhhhCCcCc
Confidence            468999999999999653210                  000         0  113467999999999999986

>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Archaeal ferredoxins
domain: Ferredoxin
species: Archaeon Sulfolobus sp. [TaxId: 2288]

Probab=97.98  E-value=2.4e-07  Score=69.61  Aligned_cols=59  Identities=19%  Similarity=0.341  Sum_probs=36.3

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+..+||.||.|+.+||.....-.  .++         .......        .........|+.||.|+.+||+|+
T Consensus        39 ~iD~~~Ci~Cg~C~~~CP~~ai~~~--~~~---------~~~~~~~--------~~~~i~~~~C~~Cg~C~~~CP~~A   97 (103)
T d1xera_          39 GVDFDLCIADGSCINACPVNVFQWY--DTP---------GHPASEK--------KADPVNEQACIFCMACVNVCPVAA   97 (103)
T ss_dssp             EEETTTCCCCCHHHHHCTTCCCEEE--ECT---------TCSSCSE--------EEECTTGGGCCCCCHHHHHCTTCC
T ss_pred             EECHHHCcCcCcccccCcccceeee--ccc---------ccccccc--------ceeEeccccCCCcChHHhhcCccc
Confidence            3467899999999999997542100  000         0000000        001123568999999999999985

>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Clostridium acidurici [TaxId: 1556]

Probab=97.95  E-value=1.6e-06  Score=57.64  Aligned_cols=47  Identities=26%  Similarity=0.536  Sum_probs=33.1

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .++|+.||.|+.+||......                 +...         +  ......|+.||.|+.+||+++
T Consensus         5 ~e~C~~Cg~C~~~Cp~~ai~~-----------------~~~~---------~--~i~~~~C~~Cg~C~~~CP~~A   51 (55)
T d2fdna_           5 NEACISCGACEPECPVNAISS-----------------GDDR---------Y--VIDADTCIDCGACAGVCPVDA   51 (55)
T ss_dssp             CTTCCCCCTTGGGCTTCCEEC-----------------CSSS---------C--EECTTTCCCCCHHHHTCTTCC
T ss_pred             CcCCCChhhHHHhcCccceEc-----------------CCce---------E--EECHHHCCCCCChhcccCCCC
Confidence            468999999999999653210                 0000         0  113467999999999999986

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

Probab=97.95  E-value=4.9e-06  Score=61.61  Aligned_cols=42  Identities=24%  Similarity=0.515  Sum_probs=35.6

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG  114 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG  114 (279)
                      +.++|++++ |.+|||||.+.|.      .+..+|+.|+||+|.+.| .|
T Consensus        15 ~~~~~~~~~-g~slLdaa~~~Gi------~i~~~C~~G~Cg~C~~~v~~G   57 (98)
T d1jq4a_          15 ESLRFECRS-DEDVITAALRQNI------FLMSSCREGGCATCKALCSEG   57 (98)
T ss_dssp             EEEEEEEES-CCTHHHHHHHHTC------CCCCSCCSSCCCCCCBCEEEC
T ss_pred             CEEEEEeCC-CchHHHHHHHcCC------CeEEcCCCceeCCceEEEEEC
Confidence            778888888 8999999999984      255789999999999986 45

>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Phthalate dioxygenase reductase, C-terminal domain
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=97.92  E-value=6.5e-06  Score=61.05  Aligned_cols=41  Identities=32%  Similarity=0.632  Sum_probs=32.1

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC  115 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~  115 (279)
                      ++|++  ++ |.||||||.+.|. .     ..++|+.|+||+|.|.| .|.
T Consensus        24 ~~~~v--~~-~~slL~aa~~~Gi-~-----ip~~C~~G~CgtC~~~v~~G~   65 (98)
T d2piaa3          24 TSFEI--PA-NRSILEVLRDANV-R-----VPSSCESGTCGSCKTALCSGE   65 (98)
T ss_dssp             CEEEE--CT-TSCHHHHHHHTTC-C-----CCCSCSSSSSCTTEEEEEESC
T ss_pred             EEEEE--Cc-CCcHHHHHHhcCC-c-----ccccCCccEeCCCEEEEEeec
Confidence            35554  56 7899999999983 2     45789999999999974 564

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=97.83  E-value=8.5e-06  Score=60.02  Aligned_cols=41  Identities=37%  Similarity=0.686  Sum_probs=33.6

Q ss_pred             EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670           67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG  114 (279)
Q Consensus        67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG  114 (279)
                      .++|++++ |.|||||+++.|. .     ..++|+.|.||+|.+.| .|
T Consensus        12 ~~~~~~~~-g~slLda~~~~Gi-~-----ip~~C~~G~CgtC~~~v~~G   53 (95)
T d1frra_          12 EFTLDVPE-GTTILDAAEEAGY-D-----LPFSCRAGACSSCLGKVVSG   53 (95)
T ss_dssp             EEEEEECT-TCCHHHHHHHTTC-C-----CCCSSSSSSSSTTEEEEEES
T ss_pred             cEEEEECC-CCcHHHHHHHcCC-C-----EEeccCCcEeCCCEEEEecc
Confidence            45667777 8999999999984 2     45789999999999986 56

>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Chlorella fusca [TaxId: 3073]

Probab=97.81  E-value=1e-05  Score=59.51  Aligned_cols=40  Identities=35%  Similarity=0.597  Sum_probs=32.5

Q ss_pred             EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670           68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG  114 (279)
Q Consensus        68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG  114 (279)
                      .+|++++ |.|||||+.++|..      ..++|+.|.||+|.+.| +|
T Consensus        12 ~~~~~~~-~~slL~aa~~~Gi~------i~~~C~~G~CgtC~~~v~~G   52 (94)
T d1awda_          12 ETIECPE-DTYILDAAEEAGLD------LPYSCRAGACSSCAGKVESG   52 (94)
T ss_dssp             EEEECCT-TSCHHHHHHHTTCC------CCCSSSSSSSSTTEEEEEES
T ss_pred             EEEEeCC-CCcHHHHHHHcCCc------EEEecCCCccCCceEEEeec
Confidence            3566677 89999999999842      44789999999999985 45

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.81  E-value=8.9e-06  Score=60.25  Aligned_cols=41  Identities=34%  Similarity=0.628  Sum_probs=32.6

Q ss_pred             EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670           67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG  114 (279)
Q Consensus        67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG  114 (279)
                      .++|++++ |.|||||+.+.|. .     ..++|+.|.||+|.+.| .|
T Consensus        13 ~~~~~~~~-getlLda~~~~gi-~-----i~~~C~~G~CgtC~~~v~~G   54 (98)
T d1iuea_          13 EKKIECNE-DEYILDASERQNV-E-----LPYSCRGGSCSTCAAKLVEG   54 (98)
T ss_dssp             EEEEEEET-TSCHHHHHHHTTC-C-----CCCSSCSSSSSTTEEEEEES
T ss_pred             eEEEEECC-CCcHHHHHHHcCC-C-----eEEcCCceEcCCCEEEEecC
Confidence            45566677 8999999999984 2     34689999999999875 45

>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]

Probab=97.73  E-value=4.7e-05  Score=56.89  Aligned_cols=42  Identities=21%  Similarity=0.357  Sum_probs=33.4

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID  113 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in  113 (279)
                      ++++|++++ |.|||+||++++....     ...|. .|.||+|.|.|.
T Consensus        11 ~~~~i~~~~-G~tLl~a~~~~gi~~i-----~~~CgG~g~C~tC~V~i~   53 (106)
T d1e9ma_          11 TRHEVEAKP-GLTVMEAARDNGVPGI-----DADCGGACACSTCHAYVD   53 (106)
T ss_dssp             CEEEEECCT-TSBHHHHHHTTTCTTC-----CCTTSSSSSSCTTEEEEC
T ss_pred             CEEEEEECC-CChHHHHHHHcCCCCc-----CcccccCceecceEEEec
Confidence            577888888 9999999999984212     24685 599999999986

>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Trichomonas vaginalis [TaxId: 5722]

Probab=97.73  E-value=3.7e-05  Score=56.26  Aligned_cols=43  Identities=12%  Similarity=0.324  Sum_probs=33.5

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDG  114 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG  114 (279)
                      ++.+|++++ |.|||+||.+.+...+     ...| ..|.||+|.|.|..
T Consensus        10 ~~~~i~~~~-G~tLl~al~~~gi~~i-----~~~CgG~~~C~tC~v~v~~   53 (93)
T d1l5pa_          10 VKKQLKFED-DQTLFTVLTEAGLMSA-----DDTCQGNKACGKCICKHVS   53 (93)
T ss_dssp             EEEEEECCT-TEEHHHHHHTTTSSCC-----TTSCSSSSSSCCCEEEEEE
T ss_pred             eEEEEEeCC-CchHHHHHHHhCCCCc-----cccccCCCEeCccEEEEcC
Confidence            567788888 9999999999884212     2468 46999999999863

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Benzoate dioxygenase reductase, N-terminal domain
species: Acinetobacter sp. [TaxId: 472]

Probab=97.72  E-value=1.4e-05  Score=59.81  Aligned_cols=42  Identities=29%  Similarity=0.483  Sum_probs=34.2

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG  114 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG  114 (279)
                      +.+.|++++ |.|||||+.+.|. .     ...+|+.|.||+|.|.| .|
T Consensus        13 ~~~~~~~~~-getlL~aa~~~gi-~-----i~~~C~~G~CgtC~v~v~~G   55 (104)
T d1krha3          13 VTRFICIAQ-GETLSDAAYRQQI-N-----IPMDCREGECGTCRAFCESG   55 (104)
T ss_dssp             CEEEEEECT-TCCHHHHHHHTTC-C-----CSCSCSSSSSCTTEEEEEEC
T ss_pred             CEEEEEeCC-CCcHHHHHHHcCC-C-----CccccCCcccCCCEEEeeeC
Confidence            356677778 8999999999984 2     44689999999999997 45

>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Thauera aromatica [TaxId: 59405]

Probab=97.67  E-value=1e-05  Score=57.70  Aligned_cols=46  Identities=24%  Similarity=0.593  Sum_probs=32.0

Q ss_pred             ccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhh------hhhhhhCCCCC
Q 023670          190 YECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTI------LNCARACPKGL  263 (279)
Q Consensus       190 ~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~C------g~C~~vCP~gi  263 (279)
                      ++||.||.|+.+||......                .+..          .  ......|+.|      |.|..+||+++
T Consensus         6 d~Ci~Cg~C~~~CP~~AI~~----------------~~~~----------~--~id~~~C~~C~~~~~~G~C~~vCP~~A   57 (80)
T d1rgva_           6 DDCTACDACVEECPNEAITP----------------GDPI----------Y--VIDPTKCSECVGAFDEPQCRLVCPADC   57 (80)
T ss_dssp             SCCCCCCTTTTTCTTCCEEC----------------CSSS----------C--EECTTTCCTTTTTCSSCHHHHHCSSCC
T ss_pred             ccCcCCcCHHHHHHhCcccc----------------cccc----------c--cccCCCCcCCCCcCCCCcchhhccccC
Confidence            58999999999999653210                0000          0  1124679999      89999999984

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.66  E-value=5.1e-05  Score=56.54  Aligned_cols=43  Identities=16%  Similarity=0.258  Sum_probs=32.6

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEEC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNID  113 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~in  113 (279)
                      ++.+|++++ |.|||+|+++++. .+|   +...| ..+.||+|.|.|.
T Consensus        13 ~~~~i~~~~-G~tLl~~~~~~gi-~i~---~~~~CgG~~~C~tC~V~v~   56 (104)
T d2bt6a1          13 ETLTTKGKI-GDSLLDVVVQNNL-DID---GFGACEGTLACSTCHLIFE   56 (104)
T ss_dssp             CEEEEEEET-TCBHHHHHHHTTC-CCT---TTTTTSSSSSBSTTEEECC
T ss_pred             CEEEEEeCC-CchHHHHHHHcCC-Ccc---cccccCCccccceEEEEec
Confidence            456788888 9999999999874 233   23346 4689999999875

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Fe3S4-ferredoxin PF1909
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.62  E-value=3.1e-06  Score=57.92  Aligned_cols=55  Identities=16%  Similarity=0.267  Sum_probs=34.5

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+..+||.||.|+.+||......+                ++....    +  .........|..||.|+.+||+++
T Consensus         6 vD~~~Ci~Cg~C~~~CP~~~~~~~----------------~~~~~~----~--~~~~~~~~~c~~c~~c~~~CP~~A   60 (66)
T d1sj1a_           6 VDQDTCIGDAICASLCPDVFEMND----------------EGKAQP----K--VEVIEDEELYNCAKEAMEACPVSA   60 (66)
T ss_dssp             ECTTTCCCCCHHHHHCTTTEEECT----------------TSCEEE----S--CSCBCCHHHHHHHHHHHHHCTTCC
T ss_pred             EeHHHCCCcChhhhhCCceEEEcc----------------cCceEe----e--ccccCChHHHhhhCHhhccCCccc
Confidence            356899999999999996542211                011000    0  000112346999999999999985

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.61  E-value=2e-05  Score=61.15  Aligned_cols=41  Identities=29%  Similarity=0.538  Sum_probs=32.2

Q ss_pred             ceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC
Q 023670           64 ELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID  113 (279)
Q Consensus        64 ~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in  113 (279)
                      .+.+|++  ++ |.||||||.+.|. .     ..++|+.|+||+|.+.|-
T Consensus        36 ~~~t~~v--~~-g~tlLdaa~~aGi-~-----ip~~Cr~G~CgsC~~~v~   76 (128)
T d1doia_          36 DYGSLEV--NE-GEYILEAAEAQGY-D-----WPFSCRAGACANCAAIVL   76 (128)
T ss_dssp             TEEEEEC--CT-TSCHHHHHHHTTC-C-----CCCSSSSSSSSTTEEEEE
T ss_pred             CceEEEE--Cc-CChHHHHHHHcCC-C-----CccCCCCCcCCCCceEee
Confidence            3556554  56 8999999999983 2     447899999999999863

>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Chromatium vinosum [TaxId: 1049]

Probab=97.61  E-value=9e-06  Score=58.00  Aligned_cols=47  Identities=23%  Similarity=0.541  Sum_probs=32.5

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhh------hhhhhhCCCC
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTI------LNCARACPKG  262 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~C------g~C~~vCP~g  262 (279)
                      .++||.||.|..+||.....               +  ....         .  ......|+.|      |.|+.+||++
T Consensus         5 td~Ci~Cg~C~~~CP~~AI~---------------~--~~~~---------~--~id~~~C~~C~~~~~~G~C~~vCP~~   56 (80)
T d1blua_           5 TDECINCDVCEPECPNGAIS---------------Q--GDET---------Y--VIEPSLCTECVGHYETSQCVEVCPVD   56 (80)
T ss_dssp             CTTCCCCCTTGGGCTTCCEE---------------E--CSSS---------E--EECGGGCCTTTTTCSSCHHHHHCTTC
T ss_pred             CcCCCChHHHHHHChhcchh---------------h--cCcc---------e--EEccccccCCCCCCCCCccccccCCC
Confidence            46899999999999965321               0  0000         0  1134679999      8999999988


Q ss_pred             C
Q 023670          263 L  263 (279)
Q Consensus       263 i  263 (279)
                      +
T Consensus        57 A   57 (80)
T d1blua_          57 C   57 (80)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

Probab=97.58  E-value=3.1e-06  Score=57.74  Aligned_cols=54  Identities=15%  Similarity=0.305  Sum_probs=35.7

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +-+.++||.||.|+.+||......++               +++.     +   +. ......|..|+.|..+||+++
T Consensus         5 ~VD~~~CigCg~C~~~cP~~f~~~~~---------------~~~~-----~---~~-~~~~~~c~~c~~c~~~CP~~a   58 (64)
T d1fxra_           5 YVDQDECIACESCVEIAPGAFAMDPE---------------IEKA-----Y---VK-DVEGASQEEVEEAMDTCPVQC   58 (64)
T ss_dssp             EECTTTCCCCCHHHHHCTTTEEEETT---------------TTEE-----E---ES-CTTSSCHHHHHHHHHHCTTCC
T ss_pred             EEchhhCccCCCccccCcCeEEEecC---------------CCee-----e---ee-ccCCCcchhHHHHHhcCCccc
Confidence            44678999999999999965321100               0000     0   11 123567999999999999985

>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=97.57  E-value=3.4e-05  Score=56.47  Aligned_cols=41  Identities=24%  Similarity=0.528  Sum_probs=31.5

Q ss_pred             EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe
Q 023670           67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC  115 (279)
Q Consensus        67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~  115 (279)
                      .+.|++++ |.|||||+++.+  ..|     ++|+.|+||+|.+.| .|.
T Consensus        12 ~~~~~~~~-~~~lLdaa~~~~--~lp-----~~Cr~G~CgtC~~~v~~G~   53 (93)
T d1wria_          12 DITFDVEP-GERLIDIGSEKA--DLP-----LSCQAGACSTCLGKIVSGT   53 (93)
T ss_dssp             EEEEEECT-TSCHHHHHHHHS--CCC-----CSSSSSSSSTTEEEEEESC
T ss_pred             cEEEEeCC-CCcHHHHHHhCC--CEE-----EEeCCcccCcCEeEeecce
Confidence            45567777 899999998753  233     589999999999985 553

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas putida, putidaredoxin [TaxId: 303]

Probab=97.56  E-value=0.00013  Score=54.45  Aligned_cols=42  Identities=14%  Similarity=0.350  Sum_probs=33.4

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID  113 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in  113 (279)
                      ++++|++++ |.|||+||++++...+     ...|. .|.||+|.|.|.
T Consensus        11 ~~~~i~~~~-G~tLl~aa~~~gi~~i-----~~~CgG~~~C~tC~V~v~   53 (106)
T d1xlqa1          11 TRRELDVAD-GVSLMQAAVSNGIYDI-----VGDCGGSASCATCHVYVN   53 (106)
T ss_dssp             CEEEEECCT-TCBHHHHHHHTTCTTS-----CCTTCSSSSSCTTEEEEC
T ss_pred             CEEEEEeCC-CChHHHHHHHhCcCCc-----hhhhhhccccccceEEec
Confidence            577889888 9999999999984212     23574 699999999987

>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Bacillus schlegelii [TaxId: 1484]

Probab=97.55  E-value=8.6e-06  Score=57.66  Aligned_cols=47  Identities=23%  Similarity=0.427  Sum_probs=33.2

Q ss_pred             cccCccc--CcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          189 MYECILC--ACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       189 ~~~CI~C--G~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .++||.|  |.|+.+||+....                 .+ .+.        +  ......|+.||.|+.+||+++
T Consensus         5 ~~~C~~C~~g~C~~~CP~~Ai~-----------------~~-~~~--------~--~id~~~C~~Cg~C~~~CP~~A   53 (77)
T d1bc6a_           5 TEPCIGTKDASCVEVCPVDCIH-----------------EG-EDQ--------Y--YIDPDVCIDCGACEAVCPVSA   53 (77)
T ss_dssp             CSTTTTCCCCSSTTTCTTCCEE-----------------EC-SSS--------E--EECTTTCCSCCSHHHHSGGGS
T ss_pred             CccCCCccCcchhhhCCCCCee-----------------cc-CCE--------E--EEChhHCcCcCccchhCCccc
Confidence            4689999  9999999975321                 00 000        1  113467999999999999886

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin A
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=7e-06  Score=54.92  Aligned_cols=51  Identities=22%  Similarity=0.448  Sum_probs=34.1

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      .+.++|+.||.|+.+||......                .++..        .+.  .....|..|+.|+.+||+++
T Consensus         5 iD~~~C~~Cg~C~~~cP~~~~~~----------------~~g~~--------~~~--~~~~~c~~c~~c~~~CP~~A   55 (59)
T d1vjwa_           5 VDADACIGCGVCENLCPDVFQLG----------------DDGKA--------KVL--QPETDLPCAKDAADSCPTGA   55 (59)
T ss_dssp             ECTTTCCCCCHHHHHCTTTEEEC----------------TTSSE--------EES--CSBCCCTHHHHHHHHCTTCC
T ss_pred             EeHHHCCCCCCChHhCchheEEc----------------cceee--------EEe--cChHHCcCcCcccCccCccc
Confidence            35689999999999999543111                11110        011  12356999999999999985

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin-like ferredoxin
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=4.9e-05  Score=57.11  Aligned_cols=37  Identities=22%  Similarity=0.557  Sum_probs=29.1

Q ss_pred             EeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEEC
Q 023670           70 INLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNID  113 (279)
Q Consensus        70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~in  113 (279)
                      |++++ |.|||||++++|..      ...+| +.|.||+|.|.|.
T Consensus        18 v~~~~-G~tLl~aa~~~gi~------i~~~CgG~g~CgtC~v~v~   55 (109)
T d1i7ha_          18 LEANS-GETILDAALRNGIE------IEHACEKSCACTTCHCIVR   55 (109)
T ss_dssp             EECCT-TCBHHHHHHHTTCC------CCCTTSSSSCCSTTEEEEE
T ss_pred             EEeCC-CCcHHHHHHHcCCC------CCcCCCCcceeCCeEEEee
Confidence            55667 89999999999842      33568 5799999999863

>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Dihydropyrimidine dehydrogenase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.49  E-value=2.4e-06  Score=69.87  Aligned_cols=52  Identities=21%  Similarity=0.362  Sum_probs=33.7

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK  261 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~  261 (279)
                      ..+.++||.||.|+.+||.....               .+.. ....   .   .  ......|+.||.|+.+||+
T Consensus       103 ~id~~~Ci~C~~C~~~Cp~~ai~---------------~i~~-~~~~---~---~--~v~~~~C~gCg~C~~vCP~  154 (173)
T d1gtea5         103 VIDEEMCINCGKCYMTCNDSGYQ---------------AIQF-DPET---H---L--PTVTDTCTGCTLCLSVCPI  154 (173)
T ss_dssp             EECTTTCCCCCHHHHHHHHHSCS---------------CEEE-CTTT---C---C--EEECTTCCCCCHHHHHCSS
T ss_pred             EEEchhCCCchHHHHhhhhCCEE---------------EEEe-cCCC---c---e--EechhhCCCcChhHhhCCC
Confidence            35678999999999999954321               0000 0000   0   0  1234689999999999995

>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas sp., terpredoxin [TaxId: 306]

Probab=97.46  E-value=7.8e-05  Score=55.60  Aligned_cols=42  Identities=14%  Similarity=0.501  Sum_probs=32.9

Q ss_pred             EEEEEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEEC
Q 023670           66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNID  113 (279)
Q Consensus        66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~in  113 (279)
                      ++.+|++++ |.|||+|+.+++...     ....| +.|.||+|.|.|.
T Consensus        11 ~~~~v~~~~-G~tLl~aa~~~gi~~-----i~~~CgG~g~C~tC~V~v~   53 (105)
T d1b9ra_          11 GEYAVDAQD-GQSLMEVATQNGVPG-----IVAECGGSCVCATCRIEIE   53 (105)
T ss_dssp             SCEEEECCT-TCCTTHHHHHHTCCC-----CCCSSTTSSCCCCCCCEEC
T ss_pred             CEEEEEECC-CCcHHHHHHHcCCCC-----cccccCCCccccceEEEec
Confidence            346688888 999999999998421     23468 5699999999986

>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Thermus thermophilus [TaxId: 274]

Probab=97.45  E-value=9.6e-06  Score=57.45  Aligned_cols=47  Identities=21%  Similarity=0.406  Sum_probs=33.5

Q ss_pred             cccCccc--CcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          189 MYECILC--ACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       189 ~~~CI~C--G~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ..+|+.|  |.|+.+||.....                 .+...         +  ......|+.||.|..+||+|+
T Consensus         5 ~d~C~~C~~~~C~~~CP~~AI~-----------------~~~~~---------~--~id~~~Ci~Cg~C~~~CP~~A   53 (77)
T d1h98a_           5 CEPCIGVKDQSCVEVCPVECIY-----------------DGGDQ---------F--YIHPEECIDCGACVPACPVNA   53 (77)
T ss_dssp             CGGGTTTCCCHHHHHCTTCCEE-----------------ECSSS---------E--EECTTTCCCCCTHHHHCTTCC
T ss_pred             CccCCCcCCchhHHHCCCCceE-----------------ccCcE---------E--EEcHHHCCCcCcCccccCcCc
Confidence            4689999  8999999975321                 00010         0  123578999999999999996

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

Probab=97.26  E-value=4e-05  Score=51.02  Aligned_cols=49  Identities=16%  Similarity=0.441  Sum_probs=32.3

Q ss_pred             ccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          190 YECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       190 ~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ++||.||.|+.+||......+                ++...       .+.  .....|..|+.|.++||+++
T Consensus         6 e~CigCg~C~~~CP~~~~~~~----------------~g~~~-------~~~--~~~~~~~~c~~c~~~CP~~A   54 (58)
T d1fxda_           6 DDCMACEACVEICPDVFEMNE----------------EGDKA-------VVI--NPDSDLDCVEEAIDSCPAEA   54 (58)
T ss_dssp             TTCCCCCHHHHHCTTTEEECS----------------SSSSE-------EES--CTTCCCHHHHHHHHHCTTCC
T ss_pred             ccCcChhhHHHHcChhheEcC----------------CCCEE-------EEe--cCCCCcHHHHHHhhcCChhc
Confidence            579999999999996432110                11100       011  13456889999999999985

>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.09  E-value=4.4e-05  Score=57.22  Aligned_cols=48  Identities=21%  Similarity=0.459  Sum_probs=33.7

Q ss_pred             cccCccc--CcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          189 MYECILC--ACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       189 ~~~CI~C--G~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ..+||.|  |.|+.+||+....    .            .++.          +  ......|+.||.|..+||.++-
T Consensus         5 ~~~C~~C~~~~C~~~CP~~ai~----~------------~~~~----------~--~id~~~Ci~Cg~C~~~CP~~ai   54 (106)
T d7fd1a_           5 TDNCIKCKYTDCVEVCPVDCFY----E------------GPNF----------L--VIHPDECIDCALCEPECPAQAI   54 (106)
T ss_dssp             CGGGTTTCCCHHHHHCTTCCEE----E------------CSSC----------E--EECTTTCCCCCTTGGGCTTCCE
T ss_pred             CccCCCCCCCccccccCCCccc----c------------cCCE----------E--EEchHHCCCCCCccccCCCCCc
Confidence            4689999  8999999965321    0            0000          1  1235789999999999999873

>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Adenylylsulfate reductase B subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.02  E-value=5.1e-05  Score=60.05  Aligned_cols=51  Identities=25%  Similarity=0.559  Sum_probs=33.6

Q ss_pred             ccccCcccC-----cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670          188 GMYECILCA-----CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG  262 (279)
Q Consensus       188 ~~~~CI~CG-----~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g  262 (279)
                      +.++|+.||     .|+.+||.....                 .+....    +  .+  ......|..||.|..+||.+
T Consensus         5 d~~~C~gCg~c~~~~C~~~CP~~ai~-----------------~~~~~~----~--~~--~~d~~~C~~C~~C~~~CP~~   59 (149)
T d1jnrb_           5 NPEKCDGCKALERTACEYICPNDLMT-----------------LDKEKM----K--AY--NREPDMCWECYSCVKMCPQG   59 (149)
T ss_dssp             CTTTCCSCCSSSSCHHHHHCTTSCEE-----------------EETTTT----E--EE--ESCGGGCCCCCHHHHHCTTC
T ss_pred             cchhCCCCCCCCcchHHHhCCcccEE-----------------ecCCCc----E--EE--EeccccCCCCccccCcCchh
Confidence            467899999     699999964321                 111100    0  01  11346799999999999987


Q ss_pred             C
Q 023670          263 L  263 (279)
Q Consensus       263 i  263 (279)
                      +
T Consensus        60 A   60 (149)
T d1jnrb_          60 A   60 (149)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin
species: Bacillus thermoproteolyticus [TaxId: 1427]

Probab=96.67  E-value=0.00017  Score=51.05  Aligned_cols=60  Identities=20%  Similarity=0.333  Sum_probs=35.9

Q ss_pred             cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670          187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL  263 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi  263 (279)
                      -+.++||.||.|+.+||......++  |-.      ....++...         ........|..|+.|..+||+++
T Consensus         6 VD~~~CigCg~C~~~cP~~f~~~~d--g~~------~~~~~~~~~---------~~~v~~~~~~~~~~aa~~CP~~A   65 (81)
T d1iqza_           6 VDKETCIACGACGAAAPDIYDYDED--GIA------YVTLDDNQG---------IVEVPDILIDDMMDAFEGCPTDS   65 (81)
T ss_dssp             ECTTTCCCCSHHHHHCTTTEEECTT--SCE------EETTTTTSS---------CSCCCGGGHHHHHHHHHHCTTCC
T ss_pred             EeHHHCcCcChHhHhCchheeEcCC--CeE------EEeecCCcC---------cccCCHHHHHHHHHHHHhCCccc
Confidence            3567899999999999976432211  100      000010000         00123467999999999999986

>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Formate dehydrogenase N, iron-sulfur (beta) subunit
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.00079  Score=57.32  Aligned_cols=60  Identities=23%  Similarity=0.520  Sum_probs=39.3

Q ss_pred             hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh---------hhh
Q 023670          186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL---------NCA  256 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg---------~C~  256 (279)
                      +.+.++||.|+.|+.+||....               ++  +..             ......|++|.         .|+
T Consensus       126 ~id~~~CiGC~~C~~ACPyga~---------------~~--~~~-------------~~~~~KC~~C~~r~~~G~~PaCv  175 (244)
T d1kqfb1         126 DFQSENCIGCGYCIAGCPFNIP---------------RL--NKE-------------DNRVYKCTLCVDRVSVGQEPACV  175 (244)
T ss_dssp             EECGGGCCCCCHHHHHCTTCCC---------------EE--ETT-------------TTEEECCCTTHHHHTTTCCCHHH
T ss_pred             EEccccccchhhHhhcCCCCCc---------------Ee--ccc-------------cCcceecccchhhhcCCCCcchH
Confidence            4456889999999999994310               11  000             11356799994         899


Q ss_pred             hhCCCCCC----hHHHHHHHHHH
Q 023670          257 RACPKGLN----PGKQIINIKQL  275 (279)
Q Consensus       257 ~vCP~gi~----~~~~I~~lR~~  275 (279)
                      ++||+++=    +.++....+++
T Consensus       176 ~~CP~~Al~fG~~~e~~~~~~~~  198 (244)
T d1kqfb1         176 KTCPTGAIHFGTKKEMLELAEQR  198 (244)
T ss_dssp             HHCTTSCEEEEEHHHHHHHHHHH
T ss_pred             HhcccCCEEEecHHHHHHHHHHH
Confidence            99999983    45555555443

>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: DsrB insert domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.67  E-value=0.00053  Score=46.56  Aligned_cols=19  Identities=26%  Similarity=0.518  Sum_probs=16.0

Q ss_pred             CccCchhhhhhhhhCCCCC
Q 023670          245 KLYRCHTILNCARACPKGL  263 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....|+.||.|+.+||.+.
T Consensus        41 d~~~CigCg~C~~aCP~~a   59 (65)
T d3c7bb1          41 DVEKCMYCGNCYTMCPGMP   59 (65)
T ss_dssp             CTTTCCCCCHHHHHCTTCC
T ss_pred             eCCcCcccChhhhhCCccc
Confidence            3578999999999999743

>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Transhydroxylase beta subunit, BthL, N-terminal domain
species: Pelobacter acidigallici [TaxId: 35816]

Probab=95.33  E-value=0.0026  Score=52.06  Aligned_cols=21  Identities=14%  Similarity=-0.099  Sum_probs=17.3

Q ss_pred             hhcccccCcccCcccCCCCCc
Q 023670          185 KLDGMYECILCACCSTSCPSY  205 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~~~CP~~  205 (279)
                      ...+.++||.||.|+.+||..
T Consensus        92 V~id~~kCiGC~~C~~aCPy~  112 (195)
T d1vlfn2          92 VLIDPEKAKGKKELLDTCPYG  112 (195)
T ss_dssp             EEECTTTTTTCGGGGGGCSSC
T ss_pred             eeeehhhccccchhhcCCCCC
Confidence            345678999999999999953

>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Respiratory nitrate reductase 1 beta chain
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.002  Score=60.23  Aligned_cols=20  Identities=30%  Similarity=0.467  Sum_probs=16.8

Q ss_pred             hhcccccCcccCcccCCCCC
Q 023670          185 KLDGMYECILCACCSTSCPS  204 (279)
Q Consensus       185 ~~~~~~~CI~CG~C~~~CP~  204 (279)
                      .+.+.++||.||.|+.+||.
T Consensus       210 v~id~~~CigC~~C~~aCPy  229 (509)
T d1y5ib1         210 VLIDQDKCRGWRMCITGCPY  229 (509)
T ss_dssp             EEECTTTCCCCCCHHHHCTT
T ss_pred             EEEchhhccchHHHHhhCCC
Confidence            34567899999999999994

>d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Tungsten containing formate dehydrogenase, small subunit
species: Desulfovibrio gigas [TaxId: 879]

Probab=94.35  E-value=0.0069  Score=50.13  Aligned_cols=59  Identities=14%  Similarity=0.196  Sum_probs=39.9

Q ss_pred             cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhh---------hhhhhhC
Q 023670          189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTI---------LNCARAC  259 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~C---------g~C~~vC  259 (279)
                      ..+||.|+.|+.+||....               ++  +..             ......|.+|         -.|+++|
T Consensus       107 ~~~c~gc~~C~~aCPy~~~---------------~~--~~~-------------~~~~~KCd~C~~R~~~G~~PaCV~~C  156 (214)
T d1h0hb_         107 TKDLEDYESVISACPYDVP---------------RK--VAE-------------SNQMAKCDMCIDRITNGLRPACVTSC  156 (214)
T ss_dssp             GGGCSCHHHHHHHCTTCCC---------------EE--CTT-------------SSCEECCCTTHHHHTTTCCCHHHHHC
T ss_pred             cccccCcceecccCCCCCc---------------ee--ccc-------------CCccEeCcccHHHHhCCCCCCceeec
Confidence            4479999999999994310               01  001             1135679999         3699999


Q ss_pred             CCCC----ChHHHHHHHHHHHH
Q 023670          260 PKGL----NPGKQIINIKQLQL  277 (279)
Q Consensus       260 P~gi----~~~~~I~~lR~~~~  277 (279)
                      |+|+    ++.+....+++++.
T Consensus       157 P~~Al~fGd~~d~~~~~~~r~~  178 (214)
T d1h0hb_         157 PTGAMNFGDLSEMEAMASARLA  178 (214)
T ss_dssp             SSSCEEEEEHHHHHHHHHHHHH
T ss_pred             ccCCEEEeehhhhHHHHHHHHH
Confidence            9998    56666666666554

>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Formate dehydrogenase N, iron-sulfur (beta) subunit
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.0046  Score=52.35  Aligned_cols=51  Identities=24%  Similarity=0.469  Sum_probs=34.0

Q ss_pred             ccccCcccCc--ccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670          188 GMYECILCAC--CSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       188 ~~~~CI~CG~--C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ....|.+|+-  |+.+||+....                 .+..+.        + .......|+.|+.|..+||.|+.
T Consensus        95 ~~~~C~HC~~p~Cv~vCPt~Aa~-----------------~~~e~G--------~-V~id~~~CiGC~~C~~ACPyga~  147 (244)
T d1kqfb1          95 RKDGCMHCEDPGCLKACPSAGAI-----------------IQYANG--------I-VDFQSENCIGCGYCIAGCPFNIP  147 (244)
T ss_dssp             EEESCCCBSSCHHHHHCCSTTSE-----------------EEETTS--------C-EEECGGGCCCCCHHHHHCTTCCC
T ss_pred             cchhhccccCCccccccccccee-----------------EEcCCC--------c-EEEccccccchhhHhhcCCCCCc
Confidence            3457999997  99999964211                 000000        0 01134679999999999999985

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=93.26  E-value=0.015  Score=45.12  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=19.8

Q ss_pred             cCCCCCCccCeeEEEECCe---eecccc
Q 023670           97 RRSCREGICGSCAMNIDGC---NGLACL  121 (279)
Q Consensus        97 ~~~c~~g~CG~C~v~inG~---~~lAC~  121 (279)
                      +..|+.|+||+|.|.+.+.   ..+.|.
T Consensus       121 ~m~Cg~GiCg~C~~~~~~g~~~~~~vC~  148 (160)
T d1ep3b2         121 RMACGIGACYACVEHDKEDESHALKVCE  148 (160)
T ss_dssp             CCSSSSSSSCTTEEEETTEEEEEEETTT
T ss_pred             cccCCCcccCcCcceecCCCCCeeEEeC
Confidence            4479999999999999874   346774

>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: DsrB insert domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.46  E-value=0.0079  Score=40.44  Aligned_cols=20  Identities=30%  Similarity=0.823  Sum_probs=17.1

Q ss_pred             hcccccCcccCcccCCCCCc
Q 023670          186 LDGMYECILCACCSTSCPSY  205 (279)
Q Consensus       186 ~~~~~~CI~CG~C~~~CP~~  205 (279)
                      ..+.++||.||.|+.+||..
T Consensus        39 ~id~~~CigCg~C~~aCP~~   58 (65)
T d3c7bb1          39 KVDVEKCMYCGNCYTMCPGM   58 (65)
T ss_dssp             EECTTTCCCCCHHHHHCTTC
T ss_pred             EEeCCcCcccChhhhhCCcc
Confidence            45678999999999999964

>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase larger subunit, N-domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=91.90  E-value=0.02  Score=40.16  Aligned_cols=19  Identities=37%  Similarity=0.866  Sum_probs=16.1

Q ss_pred             cccccCcccCcccCCCCCc
Q 023670          187 DGMYECILCACCSTSCPSY  205 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~  205 (279)
                      .+...|+.||.|+.+||..
T Consensus        60 ~~~~~C~~Cg~C~~~CP~~   78 (85)
T d1hfel2          60 PHIEACINCGQCLTHCPEN   78 (85)
T ss_dssp             CCGGGCCCCCTTGGGCTTC
T ss_pred             CChhHCCCcChhhhhCCcc
Confidence            3456799999999999974

>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Respiratory nitrate reductase 1 beta chain
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.015  Score=54.12  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=16.0

Q ss_pred             cccccCcccCc--ccCCCCCcc
Q 023670          187 DGMYECILCAC--CSTSCPSYW  206 (279)
Q Consensus       187 ~~~~~CI~CG~--C~~~CP~~~  206 (279)
                      +-...|.+|.-  |+.+||+..
T Consensus       179 ~~~~~C~hC~~~~C~~~CP~gA  200 (509)
T d1y5ib1         179 YLPRLCEHCLNPACVATCPSGA  200 (509)
T ss_dssp             EEEECCCCCSSCHHHHHCTTCC
T ss_pred             EecccccCCCCchhhhhcCcCc
Confidence            34568999987  999999753

>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Chromatium vinosum [TaxId: 1049]

Probab=91.34  E-value=0.027  Score=39.12  Aligned_cols=17  Identities=29%  Similarity=0.706  Sum_probs=15.7

Q ss_pred             cCchhhhhhhhhCCCCC
Q 023670          247 YRCHTILNCARACPKGL  263 (279)
Q Consensus       247 ~~C~~Cg~C~~vCP~gi  263 (279)
                      ..|+.||.|+.+||+++
T Consensus         6 d~Ci~Cg~C~~~CP~~A   22 (80)
T d1blua_           6 DECINCDVCEPECPNGA   22 (80)
T ss_dssp             TTCCCCCTTGGGCTTCC
T ss_pred             cCCCChHHHHHHChhcc
Confidence            57999999999999986

>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Clostridium acidurici [TaxId: 1556]

Probab=91.05  E-value=0.03  Score=35.97  Aligned_cols=17  Identities=24%  Similarity=0.567  Sum_probs=15.4

Q ss_pred             cCchhhhhhhhhCCCCC
Q 023670          247 YRCHTILNCARACPKGL  263 (279)
Q Consensus       247 ~~C~~Cg~C~~vCP~gi  263 (279)
                      ..|+.||.|+.+||.++
T Consensus         6 e~C~~Cg~C~~~Cp~~a   22 (55)
T d2fdna_           6 EACISCGACEPECPVNA   22 (55)
T ss_dssp             TTCCCCCTTGGGCTTCC
T ss_pred             cCCCChhhHHHhcCccc
Confidence            57999999999999875

>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Thauera aromatica [TaxId: 59405]

Probab=90.76  E-value=0.028  Score=39.00  Aligned_cols=17  Identities=24%  Similarity=0.651  Sum_probs=15.6

Q ss_pred             cCchhhhhhhhhCCCCC
Q 023670          247 YRCHTILNCARACPKGL  263 (279)
Q Consensus       247 ~~C~~Cg~C~~vCP~gi  263 (279)
                      ..|+.||.|+.+||.++
T Consensus         6 d~Ci~Cg~C~~~CP~~A   22 (80)
T d1rgva_           6 DDCTACDACVEECPNEA   22 (80)
T ss_dssp             SCCCCCCTTTTTCTTCC
T ss_pred             ccCcCCcCHHHHHHhCc
Confidence            57999999999999986

>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Photosystem I iron-sulfur protein PsaC
species: Synechococcus elongatus [TaxId: 32046]

Probab=90.63  E-value=0.031  Score=38.59  Aligned_cols=18  Identities=33%  Similarity=0.802  Sum_probs=16.1

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||.|+.+||.++
T Consensus         7 ~d~Ci~Cg~Cv~~Cp~~~   24 (80)
T d1jb0c_           7 YDTCIGCTQCVRACPTDV   24 (80)
T ss_dssp             ETTCCCCCHHHHHCTTCC
T ss_pred             CCCCcCccCHHHhCCccc
Confidence            357999999999999986

>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Peptostreptococcus asaccharolyticus [TaxId: 1258]

Probab=90.21  E-value=0.036  Score=35.60  Aligned_cols=17  Identities=24%  Similarity=0.542  Sum_probs=15.5

Q ss_pred             cCchhhhhhhhhCCCCC
Q 023670          247 YRCHTILNCARACPKGL  263 (279)
Q Consensus       247 ~~C~~Cg~C~~vCP~gi  263 (279)
                      ..|+.||.|+.+||.++
T Consensus         6 d~C~~C~~C~~~CP~~a   22 (55)
T d1dura_           6 DSCIACGACKPECPVNC   22 (55)
T ss_dssp             TTCCCCCCSGGGCTTCC
T ss_pred             ccCcChhHHHhhCCcCe
Confidence            47999999999999986

>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Archaeal ferredoxins
domain: Ferredoxin
species: Archaeon Sulfolobus sp. [TaxId: 2288]

Probab=89.88  E-value=0.041  Score=39.85  Aligned_cols=20  Identities=25%  Similarity=0.501  Sum_probs=17.3

Q ss_pred             CccCchhhhhhhhhCCCCCC
Q 023670          245 KLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ....|+.||.|+.+||.++-
T Consensus        41 D~~~Ci~Cg~C~~~CP~~ai   60 (103)
T d1xera_          41 DFDLCIADGSCINACPVNVF   60 (103)
T ss_dssp             ETTTCCCCCHHHHHCTTCCC
T ss_pred             CHHHCcCcCcccccCcccce
Confidence            35789999999999999873

>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.80  E-value=0.045  Score=40.04  Aligned_cols=21  Identities=38%  Similarity=0.670  Sum_probs=17.7

Q ss_pred             cccccCcccCcccCCCCCccc
Q 023670          187 DGMYECILCACCSTSCPSYWW  207 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~~  207 (279)
                      .+...||.||.|..+||....
T Consensus        34 id~~~Ci~Cg~C~~~CP~~ai   54 (106)
T d7fd1a_          34 IHPDECIDCALCEPECPAQAI   54 (106)
T ss_dssp             ECTTTCCCCCTTGGGCTTCCE
T ss_pred             EchHHCCCCCCccccCCCCCc
Confidence            456889999999999997653

>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Thermus thermophilus [TaxId: 274]

Probab=88.82  E-value=0.035  Score=38.20  Aligned_cols=19  Identities=37%  Similarity=0.805  Sum_probs=16.5

Q ss_pred             ccccCcccCcccCCCCCcc
Q 023670          188 GMYECILCACCSTSCPSYW  206 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~  206 (279)
                      +..+||.||.|+.+||...
T Consensus        35 d~~~Ci~Cg~C~~~CP~~A   53 (77)
T d1h98a_          35 HPEECIDCGACVPACPVNA   53 (77)
T ss_dssp             CTTTCCCCCTHHHHCTTCC
T ss_pred             cHHHCCCcCcCccccCcCc
Confidence            5679999999999999753

>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain V
species: Desulfovibrio africanus [TaxId: 873]

Probab=88.68  E-value=0.054  Score=39.88  Aligned_cols=19  Identities=26%  Similarity=0.513  Sum_probs=16.5

Q ss_pred             CccCchhhhhhhhhCCCCC
Q 023670          245 KLYRCHTILNCARACPKGL  263 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi  263 (279)
                      ....|+.||+|+.+||.+.
T Consensus        17 d~~~Ci~Cg~C~~vCP~~~   35 (117)
T d2c42a5          17 VPENCIQCNQCAFVCPHSA   35 (117)
T ss_dssp             CTTTCCCCCHHHHHCSSCC
T ss_pred             CchhcCCCcChhhhCchhh
Confidence            4578999999999999765

>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: NADH-quinone oxidoreductase chain 9, Nqo9
species: Thermus thermophilus [TaxId: 274]

Probab=87.66  E-value=0.083  Score=40.85  Aligned_cols=19  Identities=37%  Similarity=0.599  Sum_probs=16.8

Q ss_pred             CccCchhhhhhhhhCCCCC
Q 023670          245 KLYRCHTILNCARACPKGL  263 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi  263 (279)
                      +...|+.||.|+.+||.+.
T Consensus        24 ~~ekCI~C~~C~~~CP~~~   42 (154)
T d2fug91          24 GLEKCIGCSLCAAACPAYA   42 (154)
T ss_dssp             SCBSCCCCTHHHHHCSSCC
T ss_pred             CcccCcCCCcHHhhcCCcc
Confidence            5678999999999999865

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, second domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=87.42  E-value=0.05  Score=37.55  Aligned_cols=18  Identities=33%  Similarity=0.859  Sum_probs=15.4

Q ss_pred             cccCcccCcccCCCCCcc
Q 023670          189 MYECILCACCSTSCPSYW  206 (279)
Q Consensus       189 ~~~CI~CG~C~~~CP~~~  206 (279)
                      ...|+.||.|+.+||+..
T Consensus        61 ~~~C~~Cg~Cv~vCP~gA   78 (83)
T d3c8ya3          61 DTNCLLCGQCIIACPVAA   78 (83)
T ss_dssp             GSSCCCCCHHHHHCSSTT
T ss_pred             ccccccCCHHHhhCCCCc
Confidence            357999999999999754

>d2v4jb1 d.58.1.5 (B:209-277) DsrB insert domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: DsrB insert domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=86.85  E-value=0.064  Score=36.07  Aligned_cols=17  Identities=41%  Similarity=0.704  Sum_probs=15.2

Q ss_pred             CccCchhhhhhhhhCCC
Q 023670          245 KLYRCHTILNCARACPK  261 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~  261 (279)
                      ...+|.+||||...||.
T Consensus        46 ~~eRCMyCGNCYT~cp~   62 (69)
T d2v4jb1          46 KNERCMYCGNCYTMCPA   62 (69)
T ss_dssp             CGGGCCCCCHHHHHCTT
T ss_pred             cCCcceecCCccccCCC
Confidence            46899999999999994

>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=86.42  E-value=0.051  Score=40.93  Aligned_cols=17  Identities=35%  Similarity=0.935  Sum_probs=15.8

Q ss_pred             CccCchhhhhhhhhCCC
Q 023670          245 KLYRCHTILNCARACPK  261 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~  261 (279)
                      .++.|+.||.|..+||+
T Consensus        39 ~~~~CI~CG~C~~~CP~   55 (132)
T d1nekb1          39 GLYECILCACCSTSCPS   55 (132)
T ss_dssp             TTSCCCCCCHHHHTCHH
T ss_pred             hhHHHhHhhhhhhhCcc
Confidence            58999999999999995

>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Bacillus schlegelii [TaxId: 1484]

Probab=85.52  E-value=0.1  Score=35.62  Aligned_cols=17  Identities=24%  Similarity=0.624  Sum_probs=15.4

Q ss_pred             cCchhh--hhhhhhCCCCC
Q 023670          247 YRCHTI--LNCARACPKGL  263 (279)
Q Consensus       247 ~~C~~C--g~C~~vCP~gi  263 (279)
                      ..|++|  |.|+++||+++
T Consensus         6 ~~C~~C~~g~C~~~CP~~A   24 (77)
T d1bc6a_           6 EPCIGTKDASCVEVCPVDC   24 (77)
T ss_dssp             STTTTCCCCSSTTTCTTCC
T ss_pred             ccCCCccCcchhhhCCCCC
Confidence            579999  89999999986

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin A
species: Thermotoga maritima [TaxId: 2336]

Probab=85.49  E-value=0.086  Score=33.93  Aligned_cols=20  Identities=20%  Similarity=0.434  Sum_probs=16.9

Q ss_pred             CccCchhhhhhhhhCCCCCC
Q 023670          245 KLYRCHTILNCARACPKGLN  264 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~gi~  264 (279)
                      ....|+.||.|+.+||..+.
T Consensus         6 D~~~C~~Cg~C~~~cP~~~~   25 (59)
T d1vjwa_           6 DADACIGCGVCENLCPDVFQ   25 (59)
T ss_dssp             CTTTCCCCCHHHHHCTTTEE
T ss_pred             eHHHCCCCCCChHhCchheE
Confidence            35689999999999997764

>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Dihydropyrimidine dehydrogenase, N-terminal domain
domain: Dihydropyrimidine dehydrogenase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.76  E-value=0.15  Score=40.76  Aligned_cols=29  Identities=28%  Similarity=0.596  Sum_probs=26.2

Q ss_pred             ccCchhhh--hhhhhCCCCCChHHHHHHHHH
Q 023670          246 LYRCHTIL--NCARACPKGLNPGKQIINIKQ  274 (279)
Q Consensus       246 ~~~C~~Cg--~C~~vCP~gi~~~~~I~~lR~  274 (279)
                      ..+|..|+  -|...||.++|+.+.|..++.
T Consensus        75 A~RCl~C~~ppC~~aCP~~~dIp~~i~~i~~  105 (182)
T d1gtea1          75 AMRCLKCADAPCQKSCPTHLDIKSFITSISN  105 (182)
T ss_dssp             HHHSCCCTTCHHHHTSTTCCCHHHHHHHHHT
T ss_pred             HHHhhCCCCCCcCCCCCCCCCHHHHHHHHHc
Confidence            57899998  799999999999999988874

>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=84.47  E-value=0.082  Score=39.61  Aligned_cols=18  Identities=28%  Similarity=0.946  Sum_probs=15.7

Q ss_pred             ccccCcccCcccCCCCCc
Q 023670          188 GMYECILCACCSTSCPSY  205 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~  205 (279)
                      ....|+.||.|+.+||+.
T Consensus        98 ~~~~Ct~Cg~C~~vCP~g  115 (133)
T d2bs2b1          98 GVFGCMTLLACHDVCPKN  115 (133)
T ss_dssp             TGGGCCCCCHHHHHCTTC
T ss_pred             cchhChhhCCCcccCcCC
Confidence            456899999999999975

>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=84.21  E-value=0.085  Score=40.20  Aligned_cols=17  Identities=29%  Similarity=0.659  Sum_probs=15.6

Q ss_pred             CccCchhhhhhhhhCCC
Q 023670          245 KLYRCHTILNCARACPK  261 (279)
Q Consensus       245 ~~~~C~~Cg~C~~vCP~  261 (279)
                      .+++|+.||.|..+||+
T Consensus        39 ~~~~CI~Cg~C~~~CP~   55 (138)
T d1kf6b1          39 QFSGCINCGLCYAACPQ   55 (138)
T ss_dssp             GGGCCCCCCHHHHHCHH
T ss_pred             HHHHHHHhChhhccCcc
Confidence            57899999999999996

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

Probab=83.10  E-value=0.12  Score=33.18  Aligned_cols=17  Identities=24%  Similarity=0.647  Sum_probs=14.7

Q ss_pred             cCchhhhhhhhhCCCCC
Q 023670          247 YRCHTILNCARACPKGL  263 (279)
Q Consensus       247 ~~C~~Cg~C~~vCP~gi  263 (279)
                      ..|+.||.|+.+||..+
T Consensus         6 e~CigCg~C~~~CP~~~   22 (58)
T d1fxda_           6 DDCMACEACVEICPDVF   22 (58)
T ss_dssp             TTCCCCCHHHHHCTTTE
T ss_pred             ccCcChhhHHHHcChhh
Confidence            46999999999999654

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Fe3S4-ferredoxin PF1909
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.01  E-value=0.12  Score=33.77  Aligned_cols=18  Identities=28%  Similarity=0.493  Sum_probs=15.6

Q ss_pred             ccCchhhhhhhhhCCCCC
Q 023670          246 LYRCHTILNCARACPKGL  263 (279)
Q Consensus       246 ~~~C~~Cg~C~~vCP~gi  263 (279)
                      ...|+.||+|+.+||...
T Consensus         8 ~~~Ci~Cg~C~~~CP~~~   25 (66)
T d1sj1a_           8 QDTCIGDAICASLCPDVF   25 (66)
T ss_dssp             TTTCCCCCHHHHHCTTTE
T ss_pred             HHHCCCcChhhhhCCceE
Confidence            468999999999999654

>d2v4jb1 d.58.1.5 (B:209-277) DsrB insert domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: DsrB insert domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=82.63  E-value=0.13  Score=34.53  Aligned_cols=21  Identities=29%  Similarity=0.702  Sum_probs=17.7

Q ss_pred             ccccCcccCcccCCCCCcccC
Q 023670          188 GMYECILCACCSTSCPSYWWT  208 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~~~~~  208 (279)
                      +..+|+-||-|+..||....+
T Consensus        46 ~~eRCMyCGNCYT~cp~~~i~   66 (69)
T d2v4jb1          46 KNERCMYCGNCYTMCPALPIS   66 (69)
T ss_dssp             CGGGCCCCCHHHHHCTTCCCC
T ss_pred             cCCcceecCCccccCCCcccC
Confidence            457899999999999987643

>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Dihydropyrimidine dehydrogenase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.27  E-value=0.11  Score=41.13  Aligned_cols=17  Identities=29%  Similarity=0.735  Sum_probs=14.9

Q ss_pred             ccccCcccCcccCCCCC
Q 023670          188 GMYECILCACCSTSCPS  204 (279)
Q Consensus       188 ~~~~CI~CG~C~~~CP~  204 (279)
                      +...|+.||.|+.+||+
T Consensus       138 ~~~~C~gCg~C~~vCP~  154 (173)
T d1gtea5         138 VTDTCTGCTLCLSVCPI  154 (173)
T ss_dssp             ECTTCCCCCHHHHHCSS
T ss_pred             chhhCCCcChhHhhCCC
Confidence            34679999999999996

>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Adenylylsulfate reductase B subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.25  E-value=0.13  Score=39.50  Aligned_cols=20  Identities=25%  Similarity=0.482  Sum_probs=16.8

Q ss_pred             cccccCcccCcccCCCCCcc
Q 023670          187 DGMYECILCACCSTSCPSYW  206 (279)
Q Consensus       187 ~~~~~CI~CG~C~~~CP~~~  206 (279)
                      .+...||.||.|+.+||...
T Consensus        41 ~d~~~C~~C~~C~~~CP~~A   60 (149)
T d1jnrb_          41 REPDMCWECYSCVKMCPQGA   60 (149)
T ss_dssp             SCGGGCCCCCHHHHHCTTCC
T ss_pred             eccccCCCCccccCcCchhe
Confidence            35678999999999999654