Citrus Sinensis ID: 023675

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MEKVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLRA
Secondary Structure (PSIPRED)
ccEEEEEEEcccccccccccccHHHHccccccccEEEccccccccccccccccccEEEEEcccccccccccccccccccccEEEEcccccHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccccEEEEEEcccHHHHHHcccHHHHHHHHcccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccccccccccccHHHcccccEEEEccccccccccHcccccccEEEEEccccccHHccHHHcccccccccccccccccHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEcHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccccEEEEEEEccHHHHHccccccHHHHHHcccccccEcccEcccccccccEEEEccccccccHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MEKVVAVAVgatrpaicspslaevdfrtsvkmsgffnvsrlrslqPIKALEESATASVVQESaaisgnnlcqnstvakstnilwhknsvdkRDRQQLLQQKGCVIwitglsgsgksTLACALSQALHwrgkltyildgdncrhglnrdlsfkaeDRVENIRRIGEVAKLFADAGVICIACLispyrkdrdacrsmlpegdfievfmdvplqvceardpkglYKLAREGkvkgftgiddpyepplnCEIVLKqmgddcpspadMVETVVSYLdengflra
Flexible Loop (DISEMBL)
MEKVVAVAvgatrpaicspslaevDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRdlsfkaedrVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKgftgiddpyeppLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLRA
Low Complexity Region (SEG)
MEKVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLRA
Disordered region (IsUnstruct)
****VAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKA**************AISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLD*******
Disordered Region (DISOPRED)
**KVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDK******LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFL**
Disordered Region (DISEMBL)
MEKVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLRA
Disordered Region (DISPRO)
**KVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKVVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
O49204	312	Adenylyl-sulfate kinase,	N/A	no	0.971	0.868	0.598	3e-97
O49196	293	Adenylyl-sulfate kinase 2	yes	no	0.971	0.924	0.610	4e-94
Q43295	276	Adenylyl-sulfate kinase 1	no	no	0.731	0.739	0.786	1e-93
Q97MT8	200	Adenylyl-sulfate kinase O	yes	no	0.702	0.98	0.53	9e-61
O06735	199	Probable adenylyl-sulfate	yes	no	0.713	1.0	0.504	4e-59
A1U3X8	199	Adenylyl-sulfate kinase O	yes	no	0.695	0.974	0.536	1e-58
Q8EQN3	199	Adenylyl-sulfate kinase O	yes	no	0.706	0.989	0.54	1e-58
Q88X60	207	Adenylyl-sulfate kinase O	yes	no	0.709	0.956	0.541	7e-58
A5N960	199	Adenylyl-sulfate kinase O	yes	no	0.620	0.869	0.591	1e-57
Q7MPF0	207	Adenylyl-sulfate kinase O	yes	no	0.698	0.942	0.539	6e-57

>sp|O49204|KAPS_CATRO Adenylyl-sulfate kinase, chloroplastic OS=Catharanthus roseus GN=AKN PE=2 SV=1

 Score =  355 bits (910), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 186/311 (59%), Positives = 213/311 (68%), Gaps = 40/311 (12%)

Query: 9   VGATRPAICSPSLAEVDF---------RTSVKMSGFFNV-------SRLRSLQPIKALEE 52
           +G+ +  + S  L E DF          +SVK+   F          +L  L PIKA E 
Sbjct: 2   IGSVKRPVVSCVLPEFDFTESTGLGKKSSSVKLPVNFGAFGSGGGEVKLGFLAPIKATEG 61

Query: 53  SATASV------------------------VQESAAISGNNLCQNSTVAKSTNILWHKNS 88
           S T+S                         +       G  + Q +TV  STNILWHK +
Sbjct: 62  SKTSSFQVNGKVDNFRHLQPSDCNSNSDSSLNNCNGFPGKKILQTTTVGNSTNILWHKCA 121

Query: 89  VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD 148
           V+K +RQ+ LQQ+GCVIWITGLSGSGKSTLACALS+ LH +GKLTYILDGDN RHGLN D
Sbjct: 122 VEKSERQEPLQQRGCVIWITGLSGSGKSTLACALSRGLHAKGKLTYILDGDNVRHGLNSD 181

Query: 149 LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208
           LSFKAEDR ENIRRIGEVAKLFADAGVICIA LISPYRK  DACRS+LPEGDFIEVFMDV
Sbjct: 182 LSFKAEDRAENIRRIGEVAKLFADAGVICIASLISPYRKPPDACRSLLPEGDFIEVFMDV 241

Query: 209 PLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVV 268
           PL+VCEARDPKGLYKLAR GK+KGFTGIDDPYEPPL  EIVL Q    C SP D+ + V+
Sbjct: 242 PLKVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLKSEIVLHQKLGMCDSPCDLADIVI 301

Query: 269 SYLDENGFLRA 279
           SYL+ENG+L+A
Sbjct: 302 SYLEENGYLKA 312

Catalyzes the synthesis of activated sulfate.
Catharanthus roseus (taxid: 4058)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 2EC: 5

>sp|O49196|KAP2_ARATH Adenylyl-sulfate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=AKN2 PE=2 SV=1

 Score =  344 bits (883), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 177/290 (61%), Positives = 210/290 (72%), Gaps = 19/290 (6%)

Query: 6   AVAVGATRPAI-CSPSLAEVDFRTSVKMSGFFN-------------VSRLRSLQPIKALE 51
            +A+ A+RP++ CS      D        GF               V+   S  PI A+ 
Sbjct: 3   GLAIRASRPSVFCSIPGLGGDSHRKPPSDGFLKLPASSIPADSRKLVANSTSFHPISAVN 62

Query: 52  ESATASVVQESAAISGNNLCQ--NSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITG 109
            SA AS+  +  A+S   L +  N+   K+ NI+WH++S+ + DRQQLLQQKGCV+WITG
Sbjct: 63  VSAQASLTADFPALSETILKEGRNNGKEKAENIVWHESSICRCDRQQLLQQKGCVVWITG 122

Query: 110 LSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKL 169
           LSGSGKST+ACALS+AL  RGKLTY LDGDN RHGLNRDL+FKAE R ENIRRIGEVAKL
Sbjct: 123 LSGSGKSTVACALSKALFERGKLTYTLDGDNVRHGLNRDLTFKAEHRTENIRRIGEVAKL 182

Query: 170 FADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGK 229
           FAD GVICIA LISPYR+DRDACRS+LP+GDF+EVFMDVPL VCE+RDPKGLYKLAR GK
Sbjct: 183 FADVGVICIASLISPYRRDRDACRSLLPDGDFVEVFMDVPLHVCESRDPKGLYKLARAGK 242

Query: 230 VKGFTGIDDPYEPPLNCEIVLKQMGDD--CPSPADMVETVVSYLDENGFL 277
           +KGFTGIDDPYE P+NCE+VLK  GDD  C SP  M E ++SYL   G+L
Sbjct: 243 IKGFTGIDDPYEAPVNCEVVLKHTGDDESC-SPRQMAENIISYLQNKGYL 291

Catalyzes the synthesis of activated sulfate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q43295|KAP1_ARATH Adenylyl-sulfate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=AKN1 PE=1 SV=1

 Score =  342 bits (878), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 162/206 (78%), Positives = 178/206 (86%), Gaps = 2/206 (0%)

Query: 74  STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133
           STV  STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL 
Sbjct: 73  STVGNSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLC 132

Query: 134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
           YILDGDN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACR
Sbjct: 133 YILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACR 192

Query: 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQM 253
           S+LPEGDF+EVFMDVPL VCEARDPKGLYKLAR GK+KGFTGIDDPYEPPLNCEI L + 
Sbjct: 193 SLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLGRE 252

Query: 254 GDDCPSPADMVETVVSYLDENGFLRA 279
           G    SP +M E VV YLD  G+L+A
Sbjct: 253 GG--TSPIEMAEKVVGYLDNKGYLQA 276

Catalyzes the synthesis of activated sulfate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q97MT8|CYSC_CLOAB Adenylyl-sulfate kinase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=cysC PE=3 SV=1

 Score =  233 bits (595), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 147/200 (73%), Gaps = 4/200 (2%)

Query: 78  KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137
           KSTN++W +  + +++R+++L+QKG V+W TGLSGSGKST+A AL + L+  G LTY+LD
Sbjct: 5   KSTNVVWQETKIKRQNREKMLKQKGAVLWFTGLSGSGKSTVASALEKKLYEMGYLTYLLD 64

Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP 197
           GDN R+GLN DL FK+EDR ENIRR+ EVAKLFADAG+I I   ISP+ +DR+  R +L 
Sbjct: 65  GDNLRYGLNSDLGFKSEDRTENIRRVSEVAKLFADAGIITITTFISPFIEDRNNARKLLG 124

Query: 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDC 257
           + DF+EV++D P++VCE RDPKG+YK AR G++K FTGID PYE P   EI ++   D  
Sbjct: 125 K-DFVEVYIDCPIEVCEKRDPKGIYKKARNGEIKNFTGIDSPYEKPEKPEITVETYKD-- 181

Query: 258 PSPADMVETVVSYLDENGFL 277
            +    V+ ++ YL ++  L
Sbjct: 182 -TEEKCVDNIIEYLKQHKIL 200

Catalyzes the synthesis of activated sulfate.

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|O06735|CYSC2_BACSU Probable adenylyl-sulfate kinase OS=Bacillus subtilis (strain 168) GN=yisZ PE=3 SV=2

 Score =  228 bits (581), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 142/202 (70%), Gaps = 3/202 (1%)

Query: 76  VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
           +  + NI+WH  ++ K DRQ L   K CV+W TGLSGSGKS LA A+ + L+ +G  +Y+
Sbjct: 1   MTHNPNIIWHPAAISKSDRQSLNGHKSCVLWFTGLSGSGKSVLANAVDEKLYRKGIQSYV 60

Query: 136 LDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM 195
           LDGDN RHGLN+DL F+  DR+ENIRRIGEVAKLF D+G + +   ISP+R+DRD  R++
Sbjct: 61  LDGDNIRHGLNKDLGFQTGDRIENIRRIGEVAKLFVDSGQMILTAFISPFREDRDMVRAL 120

Query: 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGD 255
            P+G+F E+++  PL VCE RDPKGLYK AR G++K FTGID PYE PL+ + +++    
Sbjct: 121 FPKGEFFEIYVKCPLHVCEQRDPKGLYKKARNGEIKHFTGIDSPYEAPLSPDFIIES--- 177

Query: 256 DCPSPADMVETVVSYLDENGFL 277
           D  S +D  + +++ L   G +
Sbjct: 178 DQTSISDGADLIINALQNRGII 199

Catalyzes the synthesis of activated sulfate.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|A1U3X8|CYSC_MARAV Adenylyl-sulfate kinase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=cysC PE=3 SV=1

 Score =  226 bits (577), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/203 (53%), Positives = 142/203 (69%), Gaps = 9/203 (4%)

Query: 80  TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
           +NI+WH + V + +R     QK C++W TGLSGSGKST+A AL  ALH RG  T++LDGD
Sbjct: 2   SNIVWHDHKVTRAERSANKNQKPCLLWFTGLSGSGKSTIANALDVALHERGYHTFLLDGD 61

Query: 140 NCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG 199
           N RHGL  DL F  +DRVENIRR+GEV KLFADAG+I ++  ISP+  DR   R + P G
Sbjct: 62  NVRHGLCSDLGFSDDDRVENIRRVGEVCKLFADAGLIVMSAFISPFTSDRRMVRKLFPAG 121

Query: 200 DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVL---KQMGDD 256
           +FIEVFMD PL+ CE+RDPKGLYK AR G++K FTGID PYE P + EI L   +   D+
Sbjct: 122 EFIEVFMDAPLETCESRDPKGLYKKARAGEIKHFTGIDSPYEVPSHPEIRLDTSQSTVDE 181

Query: 257 CPSPADMVETVVSYLDENGFLRA 279
           C      V+++++YL E   +++
Sbjct: 182 C------VDSLIAYLQERELIKS 198

Catalyzes the synthesis of activated sulfate.

Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q8EQN3|CYSC_OCEIH Adenylyl-sulfate kinase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=cysC PE=3 SV=1

 Score =  226 bits (576), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/200 (54%), Positives = 138/200 (69%), Gaps = 3/200 (1%)

Query: 78  KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137
           KSTNI+W K SV K DRQ L   K  V+W TGLSGSGKSTL+ AL + L      TY LD
Sbjct: 3   KSTNIVWQKTSVKKADRQHLNNHKSAVLWFTGLSGSGKSTLSSALEKELFSLETHTYHLD 62

Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP 197
           GDN RHGLN++L F  EDR ENIRRIGEV+KL  DAG+I +   ISPY++DRD  R+ L 
Sbjct: 63  GDNVRHGLNKNLGFSPEDREENIRRIGEVSKLMVDAGLITLTAFISPYQEDRDHVRATLA 122

Query: 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDC 257
           + +FIE+++   L +CEARDPKGLYK AR G++  FTGID PYE PL+ EIV+     + 
Sbjct: 123 QDEFIEIYVKCSLDMCEARDPKGLYKKARLGEINNFTGIDAPYEEPLHPEIVIDT---EN 179

Query: 258 PSPADMVETVVSYLDENGFL 277
            S  + V+T++ YL +  ++
Sbjct: 180 QSIEESVQTIIHYLKDKQYI 199

Catalyzes the synthesis of activated sulfate.

Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) (taxid: 221109)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q88X60|CYSC_LACPL Adenylyl-sulfate kinase OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=cysC PE=3 SV=1

 Score =  224 bits (570), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 110/203 (54%), Positives = 139/203 (68%), Gaps = 5/203 (2%)

Query: 76  VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
           + KS NI WH++ V K +RQ L   K  V+W TGLSGSGKST+A A+ +AL  +   +Y+
Sbjct: 1   MVKSDNITWHQSQVSKAERQALNHHKSVVLWFTGLSGSGKSTIANAVEKALFDQQVGSYV 60

Query: 136 LDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM 195
           LDGDN R GLN++L F AEDR ENIRRIGEVAKLF DAGVI +   ISPYR DRD  R+ 
Sbjct: 61  LDGDNMRFGLNKNLGFSAEDREENIRRIGEVAKLFVDAGVITLTAFISPYRADRDKVRAN 120

Query: 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGD 255
           L   +FIEVF+D PL+VCE RD K LY  AR G++ GFTGID PYE P++ EI +    D
Sbjct: 121 LEVDEFIEVFVDTPLEVCEQRDVKQLYAKARRGEITGFTGIDAPYEAPIDPEITI----D 176

Query: 256 DCPSPADM-VETVVSYLDENGFL 277
               P    V+ V++YL E+ ++
Sbjct: 177 TSKQPLTASVQQVLNYLAEHHYV 199

Catalyzes the synthesis of activated sulfate.

Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) (taxid: 220668)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|A5N960|CYSC_CLOK5 Adenylyl-sulfate kinase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=cysC PE=3 SV=1

 Score =  223 bits (568), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/174 (59%), Positives = 131/174 (75%), Gaps = 1/174 (0%)

Query: 77  AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
            KSTNI WH+  VD+  R++LL Q G +IW TGLSGSGKST+A  L   L+  G+LTY+L
Sbjct: 3   VKSTNISWHRALVDREMREKLLGQNGILIWFTGLSGSGKSTIASELEMRLYNMGRLTYLL 62

Query: 137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
           DGDN RHGLN +L F  EDR+ENIRR  EV KLF D+G+I I+  ISP++ DRD  R +L
Sbjct: 63  DGDNVRHGLNSNLGFTKEDRIENIRRTAEVCKLFVDSGIITISTFISPFKDDRDKVRKLL 122

Query: 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVL 250
            + DF+EV++D PL+VCE+RDPKG+YK AR G++K FTG+D PYE P N EIV+
Sbjct: 123 GK-DFVEVYVDCPLEVCESRDPKGIYKKARNGEIKDFTGVDSPYEVPDNPEIVV 175

Catalyzes the synthesis of activated sulfate.

Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) (taxid: 431943)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q7MPF0|CYSC_VIBVY Adenylyl-sulfate kinase OS=Vibrio vulnificus (strain YJ016) GN=cysC PE=3 SV=1

 Score =  221 bits (562), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 135/202 (66%), Gaps = 7/202 (3%)

Query: 78  KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137
           K  N++WH+++V K  R  L QQK  V+W TGLSG+GKST+A AL   L  +G  TY+LD
Sbjct: 8   KDENVVWHQHAVTKTQRADLKQQKPAVLWFTGLSGAGKSTVAGALENRLAEQGFHTYLLD 67

Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP 197
           GDN RHGL  DL F  +DR ENIRRIGE+AKL ADAG+I +   ISP+R +R   R +LP
Sbjct: 68  GDNVRHGLCSDLGFSTQDRRENIRRIGELAKLMADAGLIVLTAFISPHRAERQLVRDLLP 127

Query: 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDC 257
           EG+FIEVF++  L+VCE RDPKGLYK AR G++  FTGID  YE PLN EI       D 
Sbjct: 128 EGEFIEVFVNTSLEVCEQRDPKGLYKKARAGEIANFTGIDSEYEVPLNPEI-------DL 180

Query: 258 PSPADMVETVVSYLDENGFLRA 279
           P+    +E +V  L E   LR 
Sbjct: 181 PAGEKGIEALVDLLVEQLTLRG 202

Catalyzes the synthesis of activated sulfate.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
255568599	281	adenylsulfate kinase, putative [Ricinus	0.827	0.822	0.740	1e-100
356511963	300	PREDICTED: adenylyl-sulfate kinase, chlo	0.960	0.893	0.636	7e-99
296087318	684	unnamed protein product [Vitis vinifera]	0.824	0.336	0.709	1e-98
357476475	306	Adenylyl-sulfate kinase [Medicago trunca	0.906	0.826	0.676	2e-98
359807000	296	uncharacterized protein LOC100786331 [Gl	0.953	0.898	0.637	2e-97
359480623	274	PREDICTED: adenylyl-sulfate kinase 1, ch	0.824	0.839	0.709	4e-97
359480613	274	PREDICTED: adenylyl-sulfate kinase 1, ch	0.824	0.839	0.709	8e-97
225428995	308	PREDICTED: adenylyl-sulfate kinase 1, ch	0.903	0.818	0.655	7e-96
296083047	246	unnamed protein product [Vitis vinifera]	0.774	0.878	0.754	1e-95
7387809	312	RecName: Full=Adenylyl-sulfate kinase, c	0.971	0.868	0.598	2e-95

>gi|255568599|ref|XP_002525273.1| adenylsulfate kinase, putative [Ricinus communis] gi|223535431|gb|EEF37101.1| adenylsulfate kinase, putative [Ricinus communis]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/243 (74%), Positives = 206/243 (84%), Gaps = 12/243 (4%)

Query: 37  NVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQ 96
           ++ RLRS   +KA++ESA +         SG +L     ++ + NI+WHK+ V+K +RQ+
Sbjct: 51  DLKRLRSSPLVKAMDESAIS---------SGKDL---QMMSCNGNIVWHKSPVEKCNRQE 98

Query: 97  LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156
           LLQQ+GCVIWITGLSGSGKSTLACALSQ LH +GKLTYILDGDN RHGLNRDL FKAEDR
Sbjct: 99  LLQQQGCVIWITGLSGSGKSTLACALSQGLHSKGKLTYILDGDNVRHGLNRDLGFKAEDR 158

Query: 157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            ENIRR+GEVAKLFADAGVICIACLISPYRKDRDACR++LP+GDFIEVFMDVPLQVCE R
Sbjct: 159 AENIRRVGEVAKLFADAGVICIACLISPYRKDRDACRALLPDGDFIEVFMDVPLQVCETR 218

Query: 217 DPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGF 276
           DPKGLYKLAR GK+KGFTGIDDPYEPPLNCEIVL+Q GD C SP DM ETV+SYL+E G+
Sbjct: 219 DPKGLYKLARAGKIKGFTGIDDPYEPPLNCEIVLEQKGDYCASPCDMAETVISYLEEKGY 278

Query: 277 LRA 279
           LRA
Sbjct: 279 LRA 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511963|ref|XP_003524691.1| PREDICTED: adenylyl-sulfate kinase, chloroplastic-like [Glycine max]

 Score =  366 bits (939), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 184/289 (63%), Positives = 221/289 (76%), Gaps = 21/289 (7%)

Query: 10  GATRPAICSPSLAEVDFR----TSVKMSGFFN-----VSRLRSLQPIKALEESATAS--- 57
           G  R  +C PS A           + ++G        V R RS +PIK ++E+AT S   
Sbjct: 14  GVFRNIVCGPSPAAETLGFPRLRGISVAGLHRSHRNLVLRARS-KPIK-VKENATVSASL 71

Query: 58  -------VVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGL 110
                  +  +  + +G NL Q S VA STNI+WH   + K+DRQQLLQQKGCVIW+TGL
Sbjct: 72  IDDWFKPITAKEDSDAGKNLSQMSNVANSTNIMWHDCPIQKQDRQQLLQQKGCVIWLTGL 131

Query: 111 SGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLF 170
           SGSGKST+ACALS++LH +GKL+YILDGDN RHGLN+DLSF+AEDR ENIRRIGEVAKLF
Sbjct: 132 SGSGKSTIACALSRSLHSKGKLSYILDGDNIRHGLNQDLSFRAEDRSENIRRIGEVAKLF 191

Query: 171 ADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 230
           ADAGVICI  LISPY+KDRDACR+++P+GDFIEVF+DVPL VCEARDPKGLYKLAR GK+
Sbjct: 192 ADAGVICITSLISPYQKDRDACRALMPKGDFIEVFIDVPLHVCEARDPKGLYKLARAGKI 251

Query: 231 KGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLRA 279
           KGFTGIDDPYEPP +CEIVL+Q G +C SP+DM E V+SYL+ENG+LRA
Sbjct: 252 KGFTGIDDPYEPPSSCEIVLQQKGSNCKSPSDMAEEVISYLEENGYLRA 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087318|emb|CBI33692.3| unnamed protein product [Vitis vinifera]

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 171/241 (70%), Positives = 202/241 (83%), Gaps = 11/241 (4%)

Query: 39  SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLL 98
           +R R + PIKA++    A V  ++    G N         STNI+WH+ SVDK +RQ+LL
Sbjct: 455 ARSRHVTPIKAVK----AFVSGQADGAGGKN-------GMSTNIVWHECSVDKLERQRLL 503

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           QQKGCVIWITGLSGSGKSTLACALS+ALH+RG LTY+LDGDN RHGLNRDLSF+AEDR E
Sbjct: 504 QQKGCVIWITGLSGSGKSTLACALSRALHFRGNLTYVLDGDNVRHGLNRDLSFRAEDRAE 563

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
           NIRRIGEVAKLF+D+G+ICIA LISPYRKDRDACR+ML EG+FIEVFMD+PL+VCE RDP
Sbjct: 564 NIRRIGEVAKLFSDSGIICIASLISPYRKDRDACRAMLSEGNFIEVFMDIPLEVCEERDP 623

Query: 219 KGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR 278
           KGLYKLAR GK++GFTGIDDPYEPPLNCE+VL+Q G D  SP+DM +TV+SYL+E G+L+
Sbjct: 624 KGLYKLARAGKIRGFTGIDDPYEPPLNCEVVLQQTGGDYNSPSDMAKTVISYLEEKGYLK 683

Query: 279 A 279
           A
Sbjct: 684 A 684

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476475|ref|XP_003608523.1| Adenylyl-sulfate kinase [Medicago truncatula] gi|355509578|gb|AES90720.1| Adenylyl-sulfate kinase [Medicago truncatula]

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/263 (67%), Positives = 209/263 (79%), Gaps = 10/263 (3%)

Query: 27  RTSVKMSGFFNVSRLR--SLQPIKALEESATASVVQESAAISGNNLCQN--------STV 76
           R+   ++ F++ +RL+  +L+PI+A  +S ++     S + S  N   N          +
Sbjct: 44  RSQRSLALFYDRARLKAYTLKPIQAKNDSESSCSDNNSTSFSAVNETGNLVKISARCQIL 103

Query: 77  AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
             STNILWH   V K DRQQLLQQKGCVIW+TGLSGSGKSTLACALSQ+LH RGKLTYIL
Sbjct: 104 GNSTNILWHDCPVQKCDRQQLLQQKGCVIWLTGLSGSGKSTLACALSQSLHSRGKLTYIL 163

Query: 137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
           DGDN RHGLNRDLSF+AEDR ENIRRIGEVAKLFADAG+ICI  LISPY+KDRDACR++L
Sbjct: 164 DGDNIRHGLNRDLSFRAEDRSENIRRIGEVAKLFADAGLICITSLISPYQKDRDACRALL 223

Query: 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDD 256
           PEGDFIEVF+DVPL VCEARDPKGLYKLAR GK+KGFTGIDDPYEPP  CEI+L+Q G D
Sbjct: 224 PEGDFIEVFIDVPLHVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPCCCEIILQQKGSD 283

Query: 257 CPSPADMVETVVSYLDENGFLRA 279
           C SP DM ETV+SYL+++G L+A
Sbjct: 284 CKSPKDMAETVISYLEKSGHLQA 306

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807000|ref|NP_001241077.1| uncharacterized protein LOC100786331 [Glycine max] gi|255646419|gb|ACU23688.1| unknown [Glycine max]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 176/276 (63%), Positives = 211/276 (76%), Gaps = 10/276 (3%)

Query: 4   VVAVAVGATRPAICSPSLAEVDFRTSVKMSGFFNVSRLRSLQPIKALEESATASVVQESA 63
           + AV +   R ++  P +A+ D   S+   G           P     +    + + +S 
Sbjct: 31  INAVGLSRGRKSLLKPIMAKEDHGASLIDDG----------NPKCQGHQVNKPNGINQST 80

Query: 64  AISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123
           A+SG +L + S +  S NILWH+  + K DRQQLLQQKGCVIW+TGLSGSGKSTLACALS
Sbjct: 81  ALSGKSLTEMSNIGNSMNILWHECPIQKLDRQQLLQQKGCVIWLTGLSGSGKSTLACALS 140

Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
           ++LH +GKLTYILDGDN RHGLNRDLSF+AEDR ENIRRIGEV+KL ADAGVICIA LIS
Sbjct: 141 RSLHSKGKLTYILDGDNIRHGLNRDLSFRAEDRSENIRRIGEVSKLLADAGVICIASLIS 200

Query: 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPP 243
           PYRKDRDACR++LPEGDFIEVF+DVPL VCEARDPKGLYKLAR GK+KGFTGIDDPYEPP
Sbjct: 201 PYRKDRDACRALLPEGDFIEVFIDVPLDVCEARDPKGLYKLARAGKIKGFTGIDDPYEPP 260

Query: 244 LNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLRA 279
            +CEIVL+Q G +C SP+D  E V+SYL++NG+L A
Sbjct: 261 YSCEIVLQQKGSECMSPSDTAEIVISYLEKNGYLLA 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480623|ref|XP_002284476.2| PREDICTED: adenylyl-sulfate kinase 1, chloroplastic-like [Vitis vinifera]

 Score =  360 bits (923), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 171/241 (70%), Positives = 202/241 (83%), Gaps = 11/241 (4%)

Query: 39  SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLL 98
           +R R + PIKA++    A V  ++    G N         STNI+WH+ SVDK +RQ+LL
Sbjct: 45  ARSRHVTPIKAVK----AFVSGQADGAGGKN-------GMSTNIVWHECSVDKLERQRLL 93

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           QQKGCVIWITGLSGSGKSTLACALS+ALH+RG LTY+LDGDN RHGLNRDLSF+AEDR E
Sbjct: 94  QQKGCVIWITGLSGSGKSTLACALSRALHFRGNLTYVLDGDNVRHGLNRDLSFRAEDRAE 153

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
           NIRRIGEVAKLF+D+G+ICIA LISPYRKDRDACR+ML EG+FIEVFMD+PL+VCE RDP
Sbjct: 154 NIRRIGEVAKLFSDSGIICIASLISPYRKDRDACRAMLSEGNFIEVFMDIPLEVCEERDP 213

Query: 219 KGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR 278
           KGLYKLAR GK++GFTGIDDPYEPPLNCE+VL+Q G D  SP+DM +TV+SYL+E G+L+
Sbjct: 214 KGLYKLARAGKIRGFTGIDDPYEPPLNCEVVLQQTGGDYNSPSDMAKTVISYLEEKGYLK 273

Query: 279 A 279
           A
Sbjct: 274 A 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480613|ref|XP_002271740.2| PREDICTED: adenylyl-sulfate kinase 1, chloroplastic-like [Vitis vinifera] gi|296087310|emb|CBI33684.3| unnamed protein product [Vitis vinifera]

 Score =  359 bits (921), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 171/241 (70%), Positives = 201/241 (83%), Gaps = 11/241 (4%)

Query: 39  SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLL 98
           +R R + PIKA++    A V  ++    G N         STNI+WH+ SVDK +RQ+LL
Sbjct: 45  ARSRHVTPIKAVK----AFVSGQADGAGGKN-------GMSTNIVWHECSVDKLERQRLL 93

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           QQKGCVIWITGLSGSGKSTLACALS+ALH RG LTY+LDGDN RHGLNRDLSF+AEDR E
Sbjct: 94  QQKGCVIWITGLSGSGKSTLACALSRALHSRGNLTYVLDGDNVRHGLNRDLSFRAEDRAE 153

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
           NIRRIGEVAKLF+D+G+ICIA LISPYRKDRDACR+ML EG+FIEVFMD+PL+VCE RDP
Sbjct: 154 NIRRIGEVAKLFSDSGIICIASLISPYRKDRDACRAMLSEGNFIEVFMDIPLEVCEERDP 213

Query: 219 KGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR 278
           KGLYKLAR GK++GFTGIDDPYEPPLNCE+VL+Q G D  SP+DM +TV+SYL+E G+L+
Sbjct: 214 KGLYKLARAGKIRGFTGIDDPYEPPLNCEVVLQQTGGDYASPSDMAKTVISYLEEKGYLK 273

Query: 279 A 279
           A
Sbjct: 274 A 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428995|ref|XP_002265518.1| PREDICTED: adenylyl-sulfate kinase 1, chloroplastic-like [Vitis vinifera]

 Score =  356 bits (913), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 173/264 (65%), Positives = 208/264 (78%), Gaps = 12/264 (4%)

Query: 28  TSVKMSGFFNVSRLRSLQPIKALEESAT--------ASVVQESA----AISGNNLCQNST 75
           T V+  GF++V  +  LQ     E+           + +V++S      +SG  + Q +T
Sbjct: 45  TPVRSKGFWSVVAMERLQMACVNEKVYNVGDLGKDGSDLVEKSTNGHVTVSGRTVSQLAT 104

Query: 76  VAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
           +  STNI+WH   VDK +RQ+LL+QKGCVIWITGLSGSGKS++ACALSQ+L+ RGKL+YI
Sbjct: 105 IGNSTNIMWHGCPVDKVERQKLLKQKGCVIWITGLSGSGKSSVACALSQSLYSRGKLSYI 164

Query: 136 LDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM 195
           LDGDN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR+DRDACR++
Sbjct: 165 LDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGLICIASLISPYRRDRDACRAL 224

Query: 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGD 255
           +PEG FIEVFMDVPLQVCEARDPKGLYKLAR GK++GFTGI DPYEPPLNCEIVLK   +
Sbjct: 225 VPEGSFIEVFMDVPLQVCEARDPKGLYKLARAGKIQGFTGIHDPYEPPLNCEIVLKHSEE 284

Query: 256 DCPSPADMVETVVSYLDENGFLRA 279
            C SP DM E V+ YL+ENG+L+A
Sbjct: 285 VCTSPRDMAEKVIHYLEENGYLQA 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083047|emb|CBI22451.3| unnamed protein product [Vitis vinifera]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 163/216 (75%), Positives = 189/216 (87%)

Query: 64  AISGNNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123
            +SG  + Q +T+  STNI+WH   VDK +RQ+LL+QKGCVIWITGLSGSGKS++ACALS
Sbjct: 31  TVSGRTVSQLATIGNSTNIMWHGCPVDKVERQKLLKQKGCVIWITGLSGSGKSSVACALS 90

Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
           Q+L+ RGKL+YILDGDN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LIS
Sbjct: 91  QSLYSRGKLSYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGLICIASLIS 150

Query: 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPP 243
           PYR+DRDACR+++PEG FIEVFMDVPLQVCEARDPKGLYKLAR GK++GFTGI DPYEPP
Sbjct: 151 PYRRDRDACRALVPEGSFIEVFMDVPLQVCEARDPKGLYKLARAGKIQGFTGIHDPYEPP 210

Query: 244 LNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLRA 279
           LNCEIVLK   + C SP DM E V+ YL+ENG+L+A
Sbjct: 211 LNCEIVLKHSEEVCTSPRDMAEKVIHYLEENGYLQA 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7387809|sp|O49204.1|KAPS_CATRO RecName: Full=Adenylyl-sulfate kinase, chloroplastic; AltName: Full=ATP adenosine-5'-phosphosulfate 3'-phosphotransferase; AltName: Full=Adenosine-5'-phosphosulfate kinase; Short=APS kinase; Flags: Precursor gi|2832300|gb|AAC31145.1| adenosine-5'-phosphosulfate-kinase [Catharanthus roseus]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 186/311 (59%), Positives = 213/311 (68%), Gaps = 40/311 (12%)

Query: 9   VGATRPAICSPSLAEVDF---------RTSVKMSGFFNV-------SRLRSLQPIKALEE 52
           +G+ +  + S  L E DF          +SVK+   F          +L  L PIKA E 
Sbjct: 2   IGSVKRPVVSCVLPEFDFTESTGLGKKSSSVKLPVNFGAFGSGGGEVKLGFLAPIKATEG 61

Query: 53  SATASV------------------------VQESAAISGNNLCQNSTVAKSTNILWHKNS 88
           S T+S                         +       G  + Q +TV  STNILWHK +
Sbjct: 62  SKTSSFQVNGKVDNFRHLQPSDCNSNSDSSLNNCNGFPGKKILQTTTVGNSTNILWHKCA 121

Query: 89  VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD 148
           V+K +RQ+ LQQ+GCVIWITGLSGSGKSTLACALS+ LH +GKLTYILDGDN RHGLN D
Sbjct: 122 VEKSERQEPLQQRGCVIWITGLSGSGKSTLACALSRGLHAKGKLTYILDGDNVRHGLNSD 181

Query: 149 LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208
           LSFKAEDR ENIRRIGEVAKLFADAGVICIA LISPYRK  DACRS+LPEGDFIEVFMDV
Sbjct: 182 LSFKAEDRAENIRRIGEVAKLFADAGVICIASLISPYRKPPDACRSLLPEGDFIEVFMDV 241

Query: 209 PLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVV 268
           PL+VCEARDPKGLYKLAR GK+KGFTGIDDPYEPPL  EIVL Q    C SP D+ + V+
Sbjct: 242 PLKVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLKSEIVLHQKLGMCDSPCDLADIVI 301

Query: 269 SYLDENGFLRA 279
           SYL+ENG+L+A
Sbjct: 302 SYLEENGYLKA 312

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2140005	293	AKN2 "APS-kinase 2" [Arabidops	0.856	0.815	0.688	6e-87
TAIR|locus:2046901	276	APK "APS kinase" [Arabidopsis	0.731	0.739	0.786	1.8e-85
TAIR|locus:2079379	208	APK3 "adenosine-5'-phosphosulf	0.734	0.985	0.736	9.4e-82
TAIR|locus:2158626	310	APK4 "adenosine-5'-phosphosulf	0.853	0.767	0.607	4.3e-77
TIGR_CMR|CHY_2693	197	CHY_2693 "adenylylsulfate kina	0.702	0.994	0.582	5.1e-58
UNIPROTKB|Q9NDP8	618	Ci-ASAK "ATP sulfurylase/APS k	0.695	0.313	0.542	2.7e-52
UNIPROTKB|Q9KP21	215	cysC "Adenylyl-sulfate kinase"	0.623	0.809	0.568	7.4e-50
TIGR_CMR|VC_2558	215	VC_2558 "adenylylsulfate kinas	0.623	0.809	0.568	7.4e-50
TIGR_CMR|SO_3723	205	SO_3723 "adenylylsulfate kinas	0.677	0.921	0.520	2e-49
TIGR_CMR|CPS_2145	209	CPS_2145 "adenylylsulfate kina	0.720	0.961	0.509	4.1e-49

TAIR|locus:2140005 AKN2 "APS-kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 168/244 (68%), Positives = 196/244 (80%)

Query:    38 VSRLRSLQPIKALEESATASVVQESAAISGNNLCQ--NSTVAKSTNILWHKNSVDKRDRQ 95
             V+   S  PI A+  SA AS+  +  A+S   L +  N+   K+ NI+WH++S+ + DRQ
Sbjct:    49 VANSTSFHPISAVNVSAQASLTADFPALSETILKEGRNNGKEKAENIVWHESSICRCDRQ 108

Query:    96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155
             QLLQQKGCV+WITGLSGSGKST+ACALS+AL  RGKLTY LDGDN RHGLNRDL+FKAE 
Sbjct:   109 QLLQQKGCVVWITGLSGSGKSTVACALSKALFERGKLTYTLDGDNVRHGLNRDLTFKAEH 168

Query:   156 RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEA 215
             R ENIRRIGEVAKLFAD GVICIA LISPYR+DRDACRS+LP+GDF+EVFMDVPL VCE+
Sbjct:   169 RTENIRRIGEVAKLFADVGVICIASLISPYRRDRDACRSLLPDGDFVEVFMDVPLHVCES 228

Query:   216 RDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDD--CPSPADMVETVVSYLDE 273
             RDPKGLYKLAR GK+KGFTGIDDPYE P+NCE+VLK  GDD  C SP  M E ++SYL  
Sbjct:   229 RDPKGLYKLARAGKIKGFTGIDDPYEAPVNCEVVLKHTGDDESC-SPRQMAENIISYLQN 287

Query:   274 NGFL 277
              G+L
Sbjct:   288 KGYL 291

GO:0000103 "sulfate assimilation" evidence=IEA;IGI;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA;IGI

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009536 "plastid" evidence=TAS

GO:0016310 "phosphorylation" evidence=IGI

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IGI

GO:0048232 "male gamete generation" evidence=IGI

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2046901 APK "APS kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 162/206 (78%), Positives = 178/206 (86%)

Query:    74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133
             STV  STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL 
Sbjct:    73 STVGNSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLC 132

Query:   134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
             YILDGDN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACR
Sbjct:   133 YILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACR 192

Query:   194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQM 253
             S+LPEGDF+EVFMDVPL VCEARDPKGLYKLAR GK+KGFTGIDDPYEPPLNCEI L + 
Sbjct:   193 SLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLGRE 252

Query:   254 GDDCPSPADMVETVVSYLDENGFLRA 279
             G    SP +M E VV YLD  G+L+A
Sbjct:   253 GGT--SPIEMAEKVVGYLDNKGYLQA 276

GO:0000103 "sulfate assimilation" evidence=IEA;IGI;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009536 "plastid" evidence=TAS

GO:0016310 "phosphorylation" evidence=IDA

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IGI

GO:0048232 "male gamete generation" evidence=IGI

TAIR|locus:2079379 APK3 "adenosine-5'-phosphosulfate (APS) kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
 Identities = 151/205 (73%), Positives = 175/205 (85%)

Query:    74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133
             STV  STNI W ++ + K +RQ+LL QKGCV+WITGLSGSGKSTLAC+LS+ L+ RGKL+
Sbjct:     2 STVGNSTNIFWQESPIGKTERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELNNRGKLS 61

Query:   134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
             YILDGDN RHGLN+DL FKAEDRVENIRR+GEVAKLFADAG+ICIA LISPYRKDRDACR
Sbjct:    62 YILDGDNLRHGLNKDLGFKAEDRVENIRRVGEVAKLFADAGLICIASLISPYRKDRDACR 121

Query:   194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQM 253
              M+    FIEVFM++ LQ+CEARDPKGLYKLAR GK+KGFTGIDDPYE PLNCEI LK+ 
Sbjct:   122 EMIQNSSFIEVFMNMSLQLCEARDPKGLYKLARAGKIKGFTGIDDPYESPLNCEIELKEK 181

Query:   254 GDDCPSPADMVETVVSYLDENGFLR 278
               +CPSP  M E V+SYL++ GFL+
Sbjct:   182 EGECPSPVAMAEEVISYLEDKGFLQ 206

GO:0000103 "sulfate assimilation" evidence=IEA;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0048232 "male gamete generation" evidence=IGI

TAIR|locus:2158626 APK4 "adenosine-5'-phosphosulfate (APS) kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 161/265 (60%), Positives = 197/265 (74%)

Query:    29 SVKMSGFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNS 88
             S+K+ G  +  R+   +PI A +ES + S   E+  I+G          K  NI+WH   
Sbjct:    48 SLKLRGKIH-RRMSYFRPIMAKDESIS-SRSGETKQING----------KQKNIVWHDCP 95

Query:    89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD 148
             V K DRQ+L++QKGCVIWITGLSGSGKS+LACALS+ALH RGKL+YILDGDN RHGLN D
Sbjct:    96 VTKSDRQELIKQKGCVIWITGLSGSGKSSLACALSRALHNRGKLSYILDGDNVRHGLNSD 155

Query:   149 LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDV 208
             LSF+A+DR ENIRR+GEVAKLFAD+G+ICIA LISPYR +R ACR++LP+GDFIEVFMDV
Sbjct:   156 LSFEADDRAENIRRVGEVAKLFADSGIICIASLISPYRIERAACRALLPQGDFIEVFMDV 215

Query:   209 PLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGD----------DCP 258
             PL VCEARDPKGLYK AR GK+KGFTG+DDPYE PL+CEIV++   D            P
Sbjct:   216 PLHVCEARDPKGLYKRARAGKIKGFTGVDDPYEAPLDCEIVIQNSRDKGLSSSSSSSSSP 275

Query:   259 SPA-----DMVETVVSYLDENGFLR 278
             S +     +M + VVSYLD+NG+L+
Sbjct:   276 SSSSSSLCEMADIVVSYLDQNGYLK 300

GO:0000103 "sulfate assimilation" evidence=IEA;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009536 "plastid" evidence=TAS

GO:0048232 "male gamete generation" evidence=IGI

TIGR_CMR|CHY_2693 CHY_2693 "adenylylsulfate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 116/199 (58%), Positives = 144/199 (72%)

Query:    79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
             + N+ WH+  +   DR++LL QKG VIW+TGLSGSGKST+A  L   L+ +GKL Y+LDG
Sbjct:     2 ANNLFWHEGKITAEDREKLLGQKGVVIWLTGLSGSGKSTIARELEAVLYRQGKLAYVLDG 61

Query:   139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
             DN R GLN+DL F  +DR ENIRRIGEVAKLF DAG+I I   ISP+R DRD  RS+LP 
Sbjct:    62 DNIRMGLNKDLGFSEKDRQENIRRIGEVAKLFVDAGIIVITAFISPFRADRDKVRSILPA 121

Query:   199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCP 258
             G FIEVF+D PL+VCEARD KGLY+ AREGK+  FTGI  PYEPP+  EI LK       
Sbjct:   122 GKFIEVFVDCPLEVCEARDVKGLYQKAREGKIPEFTGITSPYEPPVKPEITLKTAEQ--- 178

Query:   259 SPADMVETVVSYLDENGFL 277
             S  + V+ +++YL +N +L
Sbjct:   179 SLEECVDIILTYLRKNLYL 197

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

UNIPROTKB|Q9NDP8 Ci-ASAK "ATP sulfurylase/APS kinase" [Ciona intestinalis (taxid:7719)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 109/201 (54%), Positives = 140/201 (69%)

Query:    79 STNILWHKNSVDKRDRQQLLQQ---KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
             S+NI++ ++ V + +R Q++ +   +GC +W TGLSG+GKSTL+  L + L  +G   Y 
Sbjct:    19 SSNIVYQQHHVSRDERGQVMGKGAFRGCTVWFTGLSGAGKSTLSMKLEEYLCSKGIPAYS 78

Query:   136 LDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM 195
             LDGDN RHGLN+DL F   DR ENIRRIGEVAKLFADAGV+C+   ISPYRKDR + R +
Sbjct:    79 LDGDNIRHGLNKDLGFAPADREENIRRIGEVAKLFADAGVVCLVSFISPYRKDRQSARRV 138

Query:   196 LPEGD--FIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQM 253
               + +  FIEVF+D PLQVCE RD KGLYK AR+G++KGFTGID PYEPP N E+V K  
Sbjct:   139 HNKSNLPFIEVFVDTPLQVCEGRDVKGLYKKARQGQIKGFTGIDSPYEPPENAEVVTKTA 198

Query:   254 GDDCPSPADMVETVVSYLDEN 274
               D P    M+  V   ++ N
Sbjct:   199 --DMPVEDCMMLVVKELMERN 217

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

UNIPROTKB|Q9KP21 cysC "Adenylyl-sulfate kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 99/174 (56%), Positives = 126/174 (72%)

Query:    77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
             AK  N++WH+++VDK  R  L QQ+  V+W TGLSG+GKST+A AL   L   G  TY+L
Sbjct:    14 AKPENVVWHRHAVDKAQRATLKQQRPAVLWFTGLSGAGKSTVAGALENRLAALGYHTYLL 73

Query:   137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
             DGDN RHGL  DL F  +DR ENIRRIGE+AKL +DAG+I +   ISP+R +R   R +L
Sbjct:    74 DGDNVRHGLCSDLGFSEQDRRENIRRIGELAKLMSDAGLIVLTAFISPHRAERQMVRDLL 133

Query:   197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVL 250
             P G+F+EV+++  L VCEARDPKGLYK AR G+++ FTGID  YE PLN +I L
Sbjct:   134 PNGEFLEVYVNTSLDVCEARDPKGLYKKARAGEIRQFTGIDSAYEAPLNPDIDL 187

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

TIGR_CMR|VC_2558 VC_2558 "adenylylsulfate kinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 99/174 (56%), Positives = 126/174 (72%)

Query:    77 AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
             AK  N++WH+++VDK  R  L QQ+  V+W TGLSG+GKST+A AL   L   G  TY+L
Sbjct:    14 AKPENVVWHRHAVDKAQRATLKQQRPAVLWFTGLSGAGKSTVAGALENRLAALGYHTYLL 73

Query:   137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
             DGDN RHGL  DL F  +DR ENIRRIGE+AKL +DAG+I +   ISP+R +R   R +L
Sbjct:    74 DGDNVRHGLCSDLGFSEQDRRENIRRIGELAKLMSDAGLIVLTAFISPHRAERQMVRDLL 133

Query:   197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVL 250
             P G+F+EV+++  L VCEARDPKGLYK AR G+++ FTGID  YE PLN +I L
Sbjct:   134 PNGEFLEVYVNTSLDVCEARDPKGLYKKARAGEIRQFTGIDSAYEAPLNPDIDL 187

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

TIGR_CMR|SO_3723 SO_3723 "adenylylsulfate kinase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 100/192 (52%), Positives = 131/192 (68%)

Query:    80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
             +NI+WH++SVD+  R +L  Q   ++W TGLSG+GKSTLA AL +AL   G  TY+LDGD
Sbjct:     2 SNIVWHQHSVDQAARARLKGQNPVLLWFTGLSGAGKSTLAGALERALFEAGFHTYLLDGD 61

Query:   140 NCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG 199
             N RHGL +DL F   DR EN+RR+GEVAKL  DAG++ ++  ISP R++RD+ R+  PEG
Sbjct:    62 NVRHGLCKDLGFSVADRDENLRRVGEVAKLMVDAGLVVLSAFISPTREERDSIRARFPEG 121

Query:   200 DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPS 259
              FIEV +  PL VCE RDPKGLY  AR+G++  FTGI  PYE PL+ E+ +     D   
Sbjct:   122 QFIEVHVSTPLSVCELRDPKGLYVKARKGEIAHFTGISSPYEAPLSAELTIDTSKGDL-- 179

Query:   260 PADMVETVVSYL 271
              A  V  ++ YL
Sbjct:   180 -ASQVHALIDYL 190

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

TIGR_CMR|CPS_2145 CPS_2145 "adenylylsulfate kinase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 104/204 (50%), Positives = 131/204 (64%)

Query:    74 STVAKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133
             +T  K+ N +WH   + K  R  L QQK  ++W TGLSGSGKST+A A+   L   G  +
Sbjct:     3 TTNMKTENTVWHNQQISKEQRATLKQQKPALLWYTGLSGSGKSTVANAVDALLFKLGCHS 62

Query:   134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
             Y+LDGDN RHGLN DL F  E R+ENIRRI EVAKLF DAG+I     ISP+  DR   +
Sbjct:    63 YLLDGDNVRHGLNGDLGFSDEARIENIRRISEVAKLFLDAGLIVSTAFISPFASDRALAK 122

Query:   194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQM 253
             + L +G+FIEVF+D P+ VCE RDPKGLYK AR G++K FTGID  Y+ P   +I +K  
Sbjct:   123 AKLEDGEFIEVFIDTPISVCEQRDPKGLYKKARAGEIKDFTGIDSTYDVPTAPQIHVKTA 182

Query:   254 GDDCPSPADMVETVVSYLDENGFL 277
                  S     E +VS+L E GF+
Sbjct:   183 EQ---SVEQCAEQIVSHLIEQGFI 203

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B2VG00	CYSC_ERWT9	2, ., 7, ., 1, ., 2, 5	0.5764	0.6093	0.8457	yes	no
A3D819	CYSC_SHEB5	2, ., 7, ., 1, ., 2, 5	0.5156	0.6774	0.9219	yes	no
Q4L9E6	CYSC_STAHJ	2, ., 7, ., 1, ., 2, 5	0.5306	0.6917	0.9698	yes	no
Q7MPF0	CYSC_VIBVY	2, ., 7, ., 1, ., 2, 5	0.5396	0.6989	0.9420	yes	no
B7LWK5	CYSC_ESCF3	2, ., 7, ., 1, ., 2, 5	0.5025	0.6989	0.9701	yes	no
A1AEU4	CYSC_ECOK1	2, ., 7, ., 1, ., 2, 5	0.5025	0.6989	0.9701	yes	no
B9DLK2	CYSC_STACT	2, ., 7, ., 1, ., 2, 5	0.5151	0.6989	0.9798	yes	no
Q9P7G9	KAPS_SCHPO	2, ., 7, ., 1, ., 2, 5	0.5343	0.6917	0.9554	yes	no
Q0HYA3	CYSC_SHESR	2, ., 7, ., 1, ., 2, 5	0.5208	0.6774	0.9219	yes	no
B5XV31	CYSC_KLEP3	2, ., 7, ., 1, ., 2, 5	0.5175	0.6989	0.9701	yes	no
O49196	KAP2_ARATH	2, ., 7, ., 1, ., 2, 5	0.6103	0.9713	0.9249	yes	no
A8ANW4	CYSC_CITK8	2, ., 7, ., 1, ., 2, 5	0.5647	0.6093	0.8457	yes	no
A1RGG0	CYSC_SHESW	2, ., 7, ., 1, ., 2, 5	0.5156	0.6774	0.9219	yes	no
Q88X60	CYSC_LACPL	2, ., 7, ., 1, ., 2, 5	0.5418	0.7096	0.9565	yes	no
Q97MT8	CYSC_CLOAB	2, ., 7, ., 1, ., 2, 5	0.53	0.7025	0.98	yes	no
A6TD42	CYSC_KLEP7	2, ., 7, ., 1, ., 2, 5	0.5175	0.6989	0.9701	yes	no
O49204	KAPS_CATRO	2, ., 7, ., 1, ., 2, 5	0.5980	0.9713	0.8685	N/A	no
Q87SX6	CYSC_VIBPA	2, ., 7, ., 1, ., 2, 5	0.5408	0.6774	0.9219	yes	no
O06735	CYSC2_BACSU	2, ., 7, ., 1, ., 2, 5	0.5049	0.7132	1.0	yes	no
Q49UM5	CYSC_STAS1	2, ., 7, ., 1, ., 2, 5	0.5099	0.7132	0.9754	yes	no
B7MYQ5	CYSC_ECO81	2, ., 7, ., 1, ., 2, 5	0.5025	0.6989	0.9701	yes	no
A0KTI5	CYSC_SHESA	2, ., 7, ., 1, ., 2, 5	0.5050	0.6989	0.9512	yes	no
A4SRG6	CYSC_AERS4	2, ., 7, ., 1, ., 2, 5	0.5303	0.6989	0.9948	yes	no
A4Y9X0	CYSC_SHEPC	2, ., 7, ., 1, ., 2, 5	0.5156	0.6774	0.9219	yes	no
Q8EB13	CYSC_SHEON	2, ., 7, ., 1, ., 2, 5	0.5208	0.6774	0.9219	yes	no
B7MKM4	CYSC_ECO45	2, ., 7, ., 1, ., 2, 5	0.5025	0.6989	0.9701	yes	no
Q9KP21	CYSC_VIBCH	2, ., 7, ., 1, ., 2, 5	0.5284	0.6666	0.8651	yes	no
Q0HFM7	CYSC_SHESM	2, ., 7, ., 1, ., 2, 5	0.5104	0.6774	0.9219	yes	no
B7NT94	CYSC_ECO7I	2, ., 7, ., 1, ., 2, 5	0.5025	0.6989	0.9701	yes	no
B7UHG9	CYSC_ECO27	2, ., 7, ., 1, ., 2, 5	0.5025	0.6989	0.9701	yes	no
Q12QM6	CYSC_SHEDO	2, ., 7, ., 1, ., 2, 5	0.5156	0.6774	0.9219	yes	no
Q9KCT0	CYSC1_BACHD	2, ., 7, ., 1, ., 2, 5	0.5497	0.6738	0.9306	yes	no
B9M543	CYSC_GEOSF	2, ., 7, ., 1, ., 2, 5	0.5124	0.7096	0.9753	yes	no
A1U3X8	CYSC_MARAV	2, ., 7, ., 1, ., 2, 5	0.5369	0.6953	0.9748	yes	no
Q8EQN3	CYSC_OCEIH	2, ., 7, ., 1, ., 2, 5	0.54	0.7060	0.9899	yes	no
A7MJ70	CYSC_CROS8	2, ., 7, ., 1, ., 2, 5	0.5882	0.6093	0.8457	yes	no
Q8DE75	CYSC_VIBVU	2, ., 7, ., 1, ., 2, 5	0.5396	0.6989	0.9420	yes	no
Q1R7U1	CYSC_ECOUT	2, ., 7, ., 1, ., 2, 5	0.5025	0.6989	0.9701	yes	no
Q8ZBP3	CYSC_YERPE	2, ., 7, ., 1, ., 2, 5	0.5698	0.6415	0.8403	yes	no
A5N960	CYSC_CLOK5	2, ., 7, ., 1, ., 2, 5	0.5919	0.6200	0.8693	yes	no
A0KP33	CYSC_AERHH	2, ., 7, ., 1, ., 2, 5	0.5502	0.6774	0.9593	yes	no
Q8FEJ2	CYSC_ECOL6	2, ., 7, ., 1, ., 2, 5	0.5025	0.6989	0.9701	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.25	0.991
3rd Layer	2.7.1	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019663001	RecName- Full=Adenylyl-sulfate kinase; EC=2.7.1.25;; Catalyzes the synthesis of activated sulfate (By similarity) (202 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014451001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (483 aa)	•	•		•		•	•		0.990
	GSVIVG00020070001	SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (467 aa)	•	•		•		•	•		0.990
	GSVIVG00025889001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (435 aa)	•	•				•	•		0.849
	GSVIVG00024596001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (668 aa)	•			•		•	•		0.842
	GSVIVG00008868001	SubName- Full=Chromosome chr13 scaffold_210, whole genome shotgun sequence; (278 aa)	•			•			•		0.617
	GSVIVG00024496001	RecName- Full=Elongation factor 1-alpha;; This protein promotes the GTP-dependent binding of am [...] (447 aa)	•	•				•	•		0.582
	GSVIVG00024491001	RecName- Full=Elongation factor 1-alpha; (447 aa)	•	•				•	•		0.582
	GSVIVG00036600001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (595 aa)	•					•	•		0.563
	GSVIVG00018233001	RecName- Full=Elongation factor 1-alpha;; This protein promotes the GTP-dependent binding of am [...] (399 aa)	•	•				•	•		0.520
	GSVIVG00023150001	RecName- Full=Elongation factor 1-alpha;; This protein promotes the GTP-dependent binding of am [...] (399 aa)	•	•				•	•		0.513

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
PRK03846	198	PRK03846, PRK03846, adenylylsulfate kinase; Provis	1e-104
COG0529	197	COG0529, CysC, Adenylylsulfate kinase and related	1e-104
cd02027	149	cd02027, APSK, Adenosine 5'-phosphosulfate kinase	2e-97
pfam01583	157	pfam01583, APS_kinase, Adenylylsulphate kinase	8e-97
PRK05506	632	PRK05506, PRK05506, bifunctional sulfate adenylylt	2e-95
TIGR00455	184	TIGR00455, apsK, adenylylsulfate kinase (apsK)	6e-88
PRK00889	175	PRK00889, PRK00889, adenylylsulfate kinase; Provis	4e-66
PRK05537	568	PRK05537, PRK05537, bifunctional sulfate adenylylt	2e-60
PRK05541	176	PRK05541, PRK05541, adenylylsulfate kinase; Provis	5e-28
pfam13671	143	pfam13671, AAA_33, AAA domain	9e-08
cd02021	150	cd02021, GntK, Gluconate kinase (GntK) catalyzes t	8e-07
pfam13207	114	pfam13207, AAA_17, AAA domain	4e-06
cd01983	99	cd01983, Fer4_NifH, The Fer4_NifH superfamily cont	2e-04
pfam13481	154	pfam13481, AAA_25, AAA domain	2e-04
COG3265	161	COG3265, GntK, Gluconate kinase [Carbohydrate tran	6e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.002
cd02019	69	cd02019, NK, Nucleoside/nucleotide kinase (NK) is	0.002

>gnl|CDD|179661 PRK03846, PRK03846, adenylylsulfate kinase; Provisional

 Score =  301 bits (774), Expect = e-104
 Identities = 107/201 (53%), Positives = 135/201 (67%), Gaps = 3/201 (1%)

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
             NI+WH++ V K  R+QL   KG V+W TGLSGSGKST+A AL +ALH  G  TY+LDG
Sbjct: 1   DENIVWHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG 60

Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
           DN RHGL  DL F   DR ENIRR+GEVAKL  DAG++ +   ISP+R +R   R  L E
Sbjct: 61  DNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGE 120

Query: 199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCP 258
           G+FIEVF+D PL +CEARDPKGLYK AR G+++ FTGID  YE P + EI L        
Sbjct: 121 GEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSVYEAPESPEIHLDT---GEQ 177

Query: 259 SPADMVETVVSYLDENGFLRA 279
              ++VE ++ YL +   +R+
Sbjct: 178 LVTNLVEQLLDYLRQRDIIRS 198

Length = 198

>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

 Score =  299 bits (769), Expect = e-104
 Identities = 114/199 (57%), Positives = 141/199 (70%), Gaps = 3/199 (1%)

Query: 80  TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
            NI+WH +SV K++R+ L  QKG VIW TGLSGSGKST+A AL + L  +G   Y+LDGD
Sbjct: 1   ENIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGD 60

Query: 140 NCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG 199
           N RHGLNRDL F  EDR+ENIRR+ EVAKL ADAG+I I   ISPYR+DR   R +L EG
Sbjct: 61  NVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEG 120

Query: 200 DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPS 259
           +FIEV++D PL+VCE RDPKGLYK AR G++K FTGID PYE P N E+ L    +   S
Sbjct: 121 EFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYEAPENPELHLDTDRN---S 177

Query: 260 PADMVETVVSYLDENGFLR 278
             + VE ++  L E   ++
Sbjct: 178 VEECVEQILDLLKERKIIK 196

Length = 197

>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

 Score =  282 bits (724), Expect = 2e-97
 Identities = 101/148 (68%), Positives = 119/148 (80%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           VIW+TGLSGSGKST+A AL + L  RG+  Y+LDGDN RHGLN+DL F  EDR ENIRRI
Sbjct: 1   VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRI 60

Query: 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223
            EVAKL ADAG+I IA  ISPYR+DR+A R ++  GDF+EVF+D PL+VCE RDPKGLYK
Sbjct: 61  AEVAKLLADAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKGLYK 120

Query: 224 LAREGKVKGFTGIDDPYEPPLNCEIVLK 251
            AR G++KGFTGIDDPYE P N ++VL 
Sbjct: 121 KARAGEIKGFTGIDDPYEAPENPDLVLD 148

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate. Length = 149

>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase

 Score =  280 bits (719), Expect = 8e-97
 Identities = 101/156 (64%), Positives = 115/156 (73%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160
           +GC IW TGLSGSGKST+A AL + L  +G   Y+LDGDN RHGLN+DL F  EDR ENI
Sbjct: 1   RGCTIWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKDLGFSEEDRTENI 60

Query: 161 RRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220
           RRI EVAKLFADAG+I I   ISPYR DRD  R +  +G FIEVF+D PL+VCE RDPKG
Sbjct: 61  RRIAEVAKLFADAGLIVITSFISPYRADRDMARELHEDGKFIEVFVDTPLEVCEQRDPKG 120

Query: 221 LYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDD 256
           LYK AR G++KGFTGID PYE P N E+VL      
Sbjct: 121 LYKKARAGEIKGFTGIDSPYEAPENPELVLDTTKLS 156

Enzyme that catalyzes the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif. Length = 157

>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

 Score =  292 bits (751), Expect = 2e-95
 Identities = 107/214 (50%), Positives = 140/214 (65%), Gaps = 12/214 (5%)

Query: 73  NSTVA---------KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123
           N+TV          ++TN+ W  + V +  R     QK   +W TGLSGSGKST+A  + 
Sbjct: 422 NATVGAGMIDFALRRATNVHWQASDVSREARAARKGQKPATVWFTGLSGSGKSTIANLVE 481

Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
           + LH  G+ TY+LDGDN RHGLNRDL F   DRVENIRR+ EVA+L ADAG+I +   IS
Sbjct: 482 RRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIVLVSFIS 541

Query: 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPP 243
           P+R++R+  R++  EG+F+EVF+D PL+VCEARDPKGLY  AR G++K FTGID PYE P
Sbjct: 542 PFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAP 601

Query: 244 LNCEIVLKQMGDDCPSPADMVETVVSYLDENGFL 277
            N E+ L   G    SP ++ E V+  L   G +
Sbjct: 602 ENPELRLDTTGR---SPEELAEQVLELLRRRGAI 632

Length = 632

>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK)

 Score =  259 bits (663), Expect = 6e-88
 Identities = 104/168 (61%), Positives = 123/168 (73%), Gaps = 1/168 (0%)

Query: 84  WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143
           WH   + K +RQ L   +G VIW+TGLSGSGKST+A AL + L  +G   Y+LDGDN RH
Sbjct: 1   WHPA-ITKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH 59

Query: 144 GLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIE 203
           GLN+DL F  EDR ENIRRIGEVAKLF   G+I I   ISPYR DR   R ++ +G+FIE
Sbjct: 60  GLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIE 119

Query: 204 VFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLK 251
           VF+D PL+VCE RDPKGLYK AR G++KGFTGID PYE P N E+VL 
Sbjct: 120 VFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEVVLD 167

This protein, adenylylsulfate kinase, is often found as a fusion protein with sulfate adenylyltransferase. Important residue (active site in E.coli) is residue 100 of the seed alignment [Central intermediary metabolism, Sulfur metabolism]. Length = 184

>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional

 Score =  203 bits (519), Expect = 4e-66
 Identities = 88/180 (48%), Positives = 117/180 (65%), Gaps = 5/180 (2%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           +Q+G  +W TGLSG+GK+T+A AL++ L   G    +LDGD  R  L++ L F  EDR  
Sbjct: 1   KQRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDT 60

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
           NIRRIG VA L    GVI +   ISPYR+ R+  R+ +   +F+EVF+D PL+VCE RD 
Sbjct: 61  NIRRIGFVANLLTRHGVIVLVSAISPYRETREEVRANIG--NFLEVFVDAPLEVCEQRDV 118

Query: 219 KGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR 278
           KGLY  AR G++K FTGIDDPYEPPLN E+  +    D  S  + V+ V+  L+E G+L 
Sbjct: 119 KGLYAKARAGEIKHFTGIDDPYEPPLNPEVECRT---DLESLEESVDKVLQKLEELGYLV 175

Length = 175

>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

 Score =  200 bits (511), Expect = 2e-60
 Identities = 87/182 (47%), Positives = 110/182 (60%), Gaps = 5/182 (2%)

Query: 100 QKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           ++G  ++ TGLSG+GKST+A AL   L   RG+   +LDGD  R  L+ +L F  EDR  
Sbjct: 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDL 449

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARD 217
           NI RIG VA      G I I   I+PYR  R   R M+   G FIEV +  PL+VCE RD
Sbjct: 450 NILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRD 509

Query: 218 PKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFL 277
            KGLY  AREGK+KGFTGI DPYEPP N E+V+        +P +    ++ YL+E G+L
Sbjct: 510 RKGLYAKAREGKIKGFTGISDPYEPPANPELVIDTTN---VTPDECAHKILLYLEEKGYL 566

Query: 278 RA 279
           R 
Sbjct: 567 RG 568

Length = 568

>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional

 Score =  105 bits (264), Expect = 5e-28
 Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 4/151 (2%)

Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
             G VIWITGL+GSGK+T+A AL + L  +      LDGD  R  L     +  + R+E 
Sbjct: 5   PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHY-GYDKQSRIEM 63

Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK 219
             +  ++AK  AD G+I I   IS + +     R  LP  ++ EV++   ++    RD K
Sbjct: 64  ALKRAKLAKFLADQGMIVIVTTISMFDEIYAYNRKHLP--NYFEVYLKCDMEELIRRDQK 121

Query: 220 GLYKLAREGKVKGFTGIDDPYEPPLNCEIVL 250
           GLY  A +G++K   G+D P++ P   ++V+
Sbjct: 122 GLYTKALKGEIKNVVGVDIPFDEP-KADLVI 151

Length = 176

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 15/121 (12%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL------SFKAEDRV 157
           +I + GL GSGKST A  L + L        +L  D  R  L  D         +A  RV
Sbjct: 1   LILMVGLPGSGKSTFARRLLRELGA-----VVLSSDTLRKRLRGDGPPDISYYARASGRV 55

Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEA 215
              +R+ E+A+    AG   I    +  R++R     +          V+++ P +V   
Sbjct: 56  --YQRLLELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRE 113

Query: 216 R 216
           R
Sbjct: 114 R 114

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 25/135 (18%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA-----EDR-- 156
           +I + G+SGSGKST+  AL++ L       +I DGD+     N            EDR  
Sbjct: 1   IIVVMGVSGSGKSTVGKALAERLGAP----FI-DGDDLHPPANIAKMAAGIPLNDEDRWP 55

Query: 157 -VENIRRIGEVAKLFADAGVICIAC--LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213
            ++ +          A  GV+ +AC  L   Y   RD  R          V +D P +V 
Sbjct: 56  WLQALTDALLAKLASAGEGVV-VACSALKRIY---RDILRGGAANPRVRFVHLDGPREVL 111

Query: 214 EARDPKGLYKLAREG 228
             R        AR+G
Sbjct: 112 AERL------AARKG 120

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. Length = 150

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           +I ITG  GSGKSTLA  L++ L         LD      GL      + +D   ++  +
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIP---VISLDDLLREEGLAELDDGELDDIDIDLELL 57

Query: 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            E+    A    +     I   R+     R  L E D + VF+D+PL  C  R
Sbjct: 58  EEILDELAKQEWV-----IDGVRESTLELR--LEEADLV-VFLDLPLPACRFR 102

Length = 114

>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILD 137
           +TG  G GK+TLA  L+ AL  RGK   ++D
Sbjct: 4   VTGKGGVGKTTLAANLAAALAKRGKRVLLID 34

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. Length = 99

>gnl|CDD|222165 pfam13481, AAA_25, AAA domain

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 21/88 (23%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQAL----HWRGKL------TYILDGDNCRHGLNRDLS 150
           +G +  + G  G+GKSTLA  L+ A+     + G           LDG++   GL R   
Sbjct: 32  RGGLTLLAGAPGTGKSTLALDLAAAVATGRPFLGPFPVEPGRVLYLDGEDSEAGLRR--- 88

Query: 151 FKAEDRVENIRRIGEVAKLFADAGVICI 178
                    +R +GE  +      ++ I
Sbjct: 89  --------RLRALGEALEEIEGPDLVVI 108

This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154

>gnl|CDD|225804 COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 14/114 (12%)

Query: 109 GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKAEDRVENIRRI 163
           G+SGSGKST+  AL++ L       +I DGD+     N +     +    +DR   +  +
Sbjct: 2   GVSGSGKSTVGSALAERLGA----KFI-DGDDLHPPANIEKMSAGIPLNDDDRWPWLEAL 56

Query: 164 GEVAKLFADAG-VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
           G+ A   A     + IAC  +  R  RD  R   P   F  V++D    +   R
Sbjct: 57  GDAAASLAQKNKHVVIAC-SALKRSYRDLLREANPGLRF--VYLDGDFDLILER 107

Length = 161

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE-NIRRIGE 165
           I G  GSGK+TLA AL++ L   G     +DG++    +   L        + +      
Sbjct: 7   IVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELR 66

Query: 166 VAKLFADA 173
           +    A A
Sbjct: 67  LRLALALA 74

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRG 130
           +I ITG SGSGKST+A  L++ L  R 
Sbjct: 1   IIAITGGSGSGKSTVAKKLAEQLGGRS 27

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	100.0
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	100.0
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.96
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.94
PRK03846	198	adenylylsulfate kinase; Provisional	99.93
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	99.92
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.9
PRK00889	175	adenylylsulfate kinase; Provisional	99.89
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.86
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.85
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.84
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.83
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.82
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.82
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.81
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.81
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.81
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.81
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.8
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.8
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.79
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.79
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.79
PRK05541	176	adenylylsulfate kinase; Provisional	99.79
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.78
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.78
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.78
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.77
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.77
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.76
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.76
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.76
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.75
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.75
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.75
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.75
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.74
COG4987	573	CydC ABC-type transport system involved in cytochr	99.74
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.74
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.74
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.74
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.74
cd03246	173	ABCC_Protease_Secretion This family represents the	99.73
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.73
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.73
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.73
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.72
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.72
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.72
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.72
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.72
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.72
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.72
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.71
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.71
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.71
COG4988	559	CydD ABC-type transport system involved in cytochr	99.71
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.71
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.71
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.71
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.71
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.71
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.7
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.7
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.7
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.7
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.7
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.7
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.7
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.7
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.7
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.7
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.7
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.7
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.69
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.69
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.69
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.69
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.69
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.69
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.69
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.69
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.69
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.69
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.69
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.69
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.69
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.69
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.69
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.69
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.69
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.69
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.69
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.69
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.69
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.68
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.68
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.68
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.68
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.68
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.68
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.68
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.68
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.68
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.68
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.68
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.68
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.68
PRK10908	222	cell division protein FtsE; Provisional	99.68
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.68
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.68
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.68
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.68
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.68
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.68
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.68
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.68
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.68
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.68
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.68
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.68
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.67
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.67
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.67
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.67
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.67
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.67
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.67
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.67
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.67
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.67
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.67
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.67
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.67
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.67
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.67
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.67
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.67
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.67
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.67
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.66
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.66
COG4559	259	ABC-type hemin transport system, ATPase component	99.66
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.66
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.66
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.66
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.66
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.66
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.66
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.66
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.66
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.66
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.66
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.66
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.66
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.66
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.66
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.65
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.65
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.65
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.65
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.65
PLN03130	1622	ABC transporter C family member; Provisional	99.65
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
PLN03232	1495	ABC transporter C family member; Provisional	99.65
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.65
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.65
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.65
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.65
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.65
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.65
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.65
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.64
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.64
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.64
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.64
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.64
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
COG4181	228	Predicted ABC-type transport system involved in ly	99.64
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.64
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.64
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.64
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.64
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.64
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.64
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.64
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.64
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.64
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.64
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.64
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.64
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.63
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.63
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.63
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.63
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.63
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.63
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.63
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.63
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.63
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.63
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.63
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.63
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.63
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.63
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.63
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.63
PTZ00243	1560	ABC transporter; Provisional	99.63
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.63
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.62
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.62
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.62
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.62
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.62
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.62
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.62
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.62
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.62
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.62
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.62
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.62
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.62
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.62
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.62
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.62
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.61
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.61
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.61
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.61
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.61
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.61
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.61
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.61
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.61
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.61
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.61
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.61
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.61
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.61
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.61
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.61
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.6
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.6
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.6
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.6
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.6
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.6
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.6
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.6
PRK10938	490	putative molybdenum transport ATP-binding protein	99.6
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.6
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.6
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.6
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.59
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.59
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.59
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.59
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.59
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.59
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.59
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.59
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.59
COG4172	534	ABC-type uncharacterized transport system, duplica	99.59
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.59
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.59
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.58
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.58
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.58
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.58
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.58
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.58
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.57
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.57
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.57
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.57
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.57
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.57
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.57
COG1123	539	ATPase components of various ABC-type transport sy	99.56
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.56
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.56
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.56
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.56
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.56
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.56
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.55
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.55
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.55
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.55
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.55
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.54
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.54
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.54
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.54
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.54
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.53
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.53
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.53
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.53
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.53
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.53
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.53
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.52
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.52
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.52
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.52
PRK10938	490	putative molybdenum transport ATP-binding protein	99.52
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.52
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.51
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.51
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.51
PRK11147	635	ABC transporter ATPase component; Reviewed	99.51
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.51
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.51
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.5
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.5
PLN03130	1622	ABC transporter C family member; Provisional	99.5
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.5
PRK11147	635	ABC transporter ATPase component; Reviewed	99.5
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.5
COG1123	539	ATPase components of various ABC-type transport sy	99.5
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.5
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.49
PLN03211	659	ABC transporter G-25; Provisional	99.48
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.48
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.48
PLN03232	1495	ABC transporter C family member; Provisional	99.48
PRK13409	590	putative ATPase RIL; Provisional	99.47
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.47
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.47
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.46
COG0488	530	Uup ATPase components of ABC transporters with dup	99.46
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.46
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.46
PLN03073	718	ABC transporter F family; Provisional	99.46
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.45
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.44
PRK11545	163	gntK gluconate kinase 1; Provisional	99.43
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.43
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.43
PRK09825	176	idnK D-gluconate kinase; Provisional	99.42
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.42
PRK13409	590	putative ATPase RIL; Provisional	99.41
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.41
PRK13948	182	shikimate kinase; Provisional	99.41
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.4
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.4
PLN03073	718	ABC transporter F family; Provisional	99.4
PRK06762	166	hypothetical protein; Provisional	99.39
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.39
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.38
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.36
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.36
PRK05057	172	aroK shikimate kinase I; Reviewed	99.34
PLN03140	1470	ABC transporter G family member; Provisional	99.34
COG0488	530	Uup ATPase components of ABC transporters with dup	99.32
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.32
COG4172	534	ABC-type uncharacterized transport system, duplica	99.31
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.3
COG4178	604	ABC-type uncharacterized transport system, permeas	99.28
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.27
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.26
PRK13949	169	shikimate kinase; Provisional	99.25
PLN02199	303	shikimate kinase	99.23
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.23
PRK00131	175	aroK shikimate kinase; Reviewed	99.22
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.21
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.21
PTZ00243	1560	ABC transporter; Provisional	99.2
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.2
PLN03140	1470	ABC transporter G family member; Provisional	99.19
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.15
PRK13947	171	shikimate kinase; Provisional	99.14
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.12
PRK13946	184	shikimate kinase; Provisional	99.12
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.1
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.09
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.08
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.08
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.06
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.05
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.04
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.03
PRK00625	173	shikimate kinase; Provisional	99.03
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.0
KOG0062	582	consensus ATPase component of ABC transporters wit	98.99
COG0645	170	Predicted kinase [General function prediction only	98.99
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	98.97
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.96
PRK04182	180	cytidylate kinase; Provisional	98.96
PRK03731	171	aroL shikimate kinase II; Reviewed	98.95
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.89
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.88
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.87
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	98.84
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.83
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.81
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.81
PRK03839	180	putative kinase; Provisional	98.8
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.8
PHA02530	300	pseT polynucleotide kinase; Provisional	98.79
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.78
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.77
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.74
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.73
PRK08233	182	hypothetical protein; Provisional	98.72
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.69
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	98.66
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.66
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.64
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	98.62
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.6
PRK00300	205	gmk guanylate kinase; Provisional	98.6
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.6
PRK14532	188	adenylate kinase; Provisional	98.57
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.57
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.57
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	98.55
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.54
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.53
PRK14527	191	adenylate kinase; Provisional	98.52
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.52
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	98.52
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.5
PRK13975	196	thymidylate kinase; Provisional	98.5
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.49
PRK01184	184	hypothetical protein; Provisional	98.47
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.46
PLN02200	234	adenylate kinase family protein	98.42
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.41
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.4
PRK06217	183	hypothetical protein; Validated	98.38
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.37
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.37
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	98.36
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	98.35
PRK14530	215	adenylate kinase; Provisional	98.32
PRK08118	167	topology modulation protein; Reviewed	98.31
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.31
PRK14738	206	gmk guanylate kinase; Provisional	98.31
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.3
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.3
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.3
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.3
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.28
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	98.28
KOG0062	582	consensus ATPase component of ABC transporters wit	98.27
PRK00023	225	cmk cytidylate kinase; Provisional	98.27
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.26
PRK00698	205	tmk thymidylate kinase; Validated	98.25
PRK07261	171	topology modulation protein; Provisional	98.25
PRK13808	333	adenylate kinase; Provisional	98.24
PRK06761	282	hypothetical protein; Provisional	98.24
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.24
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.22
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	98.2
COG4639	168	Predicted kinase [General function prediction only	98.19
PRK14531	183	adenylate kinase; Provisional	98.18
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.16
PRK14737	186	gmk guanylate kinase; Provisional	98.15
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.12
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.11
PRK10416	318	signal recognition particle-docking protein FtsY;	98.1
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.1
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.08
PRK02496	184	adk adenylate kinase; Provisional	98.08
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.07
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.07
PRK06547	172	hypothetical protein; Provisional	98.06
PLN02165	334	adenylate isopentenyltransferase	98.05
PLN02924	220	thymidylate kinase	98.05
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.04
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.03
PRK08356	195	hypothetical protein; Provisional	98.03
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.03

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-38  Score=257.40  Aligned_cols=195  Identities=59%  Similarity=0.991  Sum_probs=185.5

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHH
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI  160 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~  160 (279)
                      ++.|+...++...+..+..++|.++||+|+|||||||++++|...|...+...+++|||++|++++.+++|+.+++.+++
T Consensus         2 ni~w~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eni   81 (197)
T COG0529           2 NIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENI   81 (197)
T ss_pred             CccccccccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHH
Confidence            46677667777788888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcC
Q 023675          161 RRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPY  240 (279)
Q Consensus       161 ~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~  240 (279)
                      +++.+++.+|.++|++++.++.||....|+.+|+++.+.+|++||+|+|++.|.+|++++||++++.|++.+|+++..+|
T Consensus        82 RRvaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pY  161 (197)
T COG0529          82 RRVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPY  161 (197)
T ss_pred             HHHHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCC
Confidence            99999999999999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             CCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCcc
Q 023675          241 EPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR  278 (279)
Q Consensus       241 ~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~~  278 (279)
                      ++|..|+++++|   +..++++++++|+.+|.+...++
T Consensus       162 E~P~~Pel~l~t---~~~~vee~v~~i~~~l~~~~~~~  196 (197)
T COG0529         162 EAPENPELHLDT---DRNSVEECVEQILDLLKERKIIK  196 (197)
T ss_pred             CCCCCCeeEecc---ccCCHHHHHHHHHHHHHhccccc
Confidence            999999999999   88999999999999999876653

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-36  Score=238.63  Aligned_cols=198  Identities=82%  Similarity=1.342  Sum_probs=188.2

Q ss_pred             CCCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHH
Q 023675           79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE  158 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~  158 (279)
                      ..+|.|+...+++.+|..|.-|+|.+||++|.|||||||++-+|.+.|...+.-.+.+|||++|.+++.+++|..+++.+
T Consensus         8 atNI~wh~~~v~k~eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~E   87 (207)
T KOG0635|consen    8 ATNITWHESSVTKEERQKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNE   87 (207)
T ss_pred             ccceeeecCCccHHHHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhh
Confidence            35899999999999999999999999999999999999999999999988888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccC
Q 023675          159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDD  238 (279)
Q Consensus       159 ~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~  238 (279)
                      .++++.+++.+|.+.+++.+....+|++.+|+.+|+++.+.+|++||+|.|++.+.+|++++||+..+.|++..|+++.+
T Consensus        88 NIRRigeVaKLFADag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFTGIdd  167 (207)
T KOG0635|consen   88 NIRRIGEVAKLFADAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFTGIDD  167 (207)
T ss_pred             hHHHHHHHHHHHhccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhcccccccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCcc
Q 023675          239 PYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR  278 (279)
Q Consensus       239 ~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~~  278 (279)
                      ||+.|..+++++...  ...+|+++++.|+.||.++|+++
T Consensus       168 PYEaP~~cEi~l~~~--~~~sp~~mae~iv~YL~~kg~l~  205 (207)
T KOG0635|consen  168 PYEAPLNCEIVLKSH--ESSSPEEMAEIIVSYLDNKGYLQ  205 (207)
T ss_pred             cccCCCCcEEEEccC--CCCCHHHHHHHHHHHHhhcChhc
Confidence            999999999999872  34468889999999999999886

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.96  E-value=2.7e-29  Score=203.94  Aligned_cols=152  Identities=63%  Similarity=1.067  Sum_probs=132.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC  180 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~  180 (279)
                      +|.+|||+|.||||||||++.|...|...+...++||||.++..+..+++|+.+++.++++++.+++.++.+.|.+++++
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva   80 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA   80 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence            58899999999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675          181 LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQ  252 (279)
Q Consensus       181 ~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~  252 (279)
                      ..++.+..|+.+|+.+.+..|++||+++|.+.|.+|+++++|++...|++.+++++..+|++|..|+++|+|
T Consensus        81 ~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~KglY~ka~~g~i~~~~Gvd~~ye~P~~pdl~idt  152 (156)
T PF01583_consen   81 FISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPKGLYAKARAGEIKNFTGVDDPYEEPLNPDLVIDT  152 (156)
T ss_dssp             ----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTTSHHHHHHTTSSSSHTTTSS-----SS-SEEEET
T ss_pred             eccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCchhHHHHhhCCCcCCccccccCCCCCCCCeEEEeC
Confidence            999999999999999997789999999999999999999999999999999999999999999999999999

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.94  E-value=4.6e-26  Score=224.42  Aligned_cols=248  Identities=44%  Similarity=0.758  Sum_probs=211.1

Q ss_pred             cccCCCcceeeeeeccccc--CccccccCccccccccccccchhhhhhhhcccccccccccccccCCCCeEEeecceeec
Q 023675           15 AICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKR   92 (279)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   92 (279)
                      .|..||.|.|.|.++.|++  +|.+++.+|.|.++|+-...           +.|.|.+.... +...+++|....++..
T Consensus       383 ~l~~g~~~~v~l~~~~pi~~e~~~~~~~lGRfilrdr~~~~-----------Tva~G~I~~~~-~~~~~~~~~~~~~~~~  450 (632)
T PRK05506        383 TLELNEIGRCNLSTDAPIAFDPYARNRTTGSFILIDRLTNA-----------TVGAGMIDFAL-RRATNVHWQASDVSRE  450 (632)
T ss_pred             eeCCCCEEEEEEEECCEEeeeeccccccCceEEEEeccCCc-----------eEEEEEECccc-cccccccccccccCHH
Confidence            4889999999999999998  99999999999999988877           55555553111 2456788887766665


Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHh
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFAD  172 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  172 (279)
                      .+.+...++|.+++++|.+||||||+++.|+..|...+.+.+++++|.+++.+.....|+++++..+++.+...+..+..
T Consensus       451 ~~~~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~  530 (632)
T PRK05506        451 ARAARKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMAD  530 (632)
T ss_pred             HHHHHhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            56566667899999999999999999999999986556678999999999888777789999999999998888888888


Q ss_pred             CCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675          173 AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQ  252 (279)
Q Consensus       173 ~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~  252 (279)
                      .|..+++++..+.+..|+.+++++....+..+||+.|.+.+.+|..++++...+.+++..+...+.+||+|..++++|++
T Consensus       531 ~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~y~~P~~a~~~Id~  610 (632)
T PRK05506        531 AGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAPENPELRLDT  610 (632)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccccccccCCCCCCCCeEEEeC
Confidence            89888998888888889999988876567779999999999999988888766678888999999999988778899998


Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCc
Q 023675          253 MGDDCPSPADMVETVVSYLDENGFL  277 (279)
Q Consensus       253 ~~~~~~~~~e~~~~Il~~l~~~~~~  277 (279)
                         +..++++++++|+++|..++++
T Consensus       611 ---~~~s~~e~v~~Ii~~l~~~~~~  632 (632)
T PRK05506        611 ---TGRSPEELAEQVLELLRRRGAI  632 (632)
T ss_pred             ---CCCCHHHHHHHHHHHHHHcCCC
Confidence               7889999999999999887764

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.93  E-value=7.6e-25  Score=186.30  Aligned_cols=194  Identities=55%  Similarity=0.919  Sum_probs=164.7

Q ss_pred             eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHH
Q 023675           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR  161 (279)
Q Consensus        82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~  161 (279)
                      +.|....++..++.....++|.+++|+|+|||||||+++.|++.+...+.|.+++|+|++++.+...+++.++++.++++
T Consensus         4 ~~~~~~~v~~~~~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~   83 (198)
T PRK03846          4 IVWHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIR   83 (198)
T ss_pred             cccccCCCCHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHH
Confidence            45666666676777677789999999999999999999999998866677899999999987665667888888888888


Q ss_pred             HHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCC
Q 023675          162 RIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYE  241 (279)
Q Consensus       162 ~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~  241 (279)
                      ++...+..+...|..++.++.++.+..|+.++.++....++.|||++|.+.+.+|..++++...+.+++..+...+.+|+
T Consensus        84 ~l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~Y~  163 (198)
T PRK03846         84 RVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSVYE  163 (198)
T ss_pred             HHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCcccccccCC
Confidence            88888887777888888888877788899999998876776799999999999998777776665677888888899977


Q ss_pred             CCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCcc
Q 023675          242 PPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR  278 (279)
Q Consensus       242 ~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~~  278 (279)
                      +|..++++|++   +..++++++++|+++|+.+++++
T Consensus       164 ~p~~ad~~Idt---~~~~~~~vv~~Il~~l~~~~~~~  197 (198)
T PRK03846        164 APESPEIHLDT---GEQLVTNLVEQLLDYLRQRDIIR  197 (198)
T ss_pred             CCCCCCEEEEC---CCCCHHHHHHHHHHHHHHcCCCC
Confidence            77778999999   78899999999999999988764

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=99.92  E-value=2.9e-25  Score=197.36  Aligned_cols=178  Identities=54%  Similarity=0.906  Sum_probs=167.5

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcch
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC  177 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  177 (279)
                      ..-+|.++|+.|.||+||||+.-+|.+.|..-+-..+-+|||+++.++...++|+++++.+.++++.+++.+|.+.|++.
T Consensus        46 ~gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvc  125 (627)
T KOG4238|consen   46 GGFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVC  125 (627)
T ss_pred             CCccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCcee
Confidence            45579999999999999999999999999877777889999999999999999999999999999999999999999999


Q ss_pred             hcccCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCC
Q 023675          178 IACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGD  255 (279)
Q Consensus       178 i~~~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~  255 (279)
                      +..+.++.+++|.-+|.+-...  +|+++++|.|++.|.+|++++||+..+.|++..|+++++.|+.|+.+++++++   
T Consensus       126 itsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gftgids~ye~pe~~e~vl~t---  202 (627)
T KOG4238|consen  126 ITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGFTGIDSDYEKPETPERVLKT---  202 (627)
T ss_pred             eehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccccccccccccccCCCCChhHHhhc---
Confidence            9999999999998899887654  89999999999999999999999999999999999999999999999999999   


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCcc
Q 023675          256 DCPSPADMVETVVSYLDENGFLR  278 (279)
Q Consensus       256 ~~~~~~e~~~~Il~~l~~~~~~~  278 (279)
                      +..+..++++++++.|+++++++
T Consensus       203 ~~~~v~~cvqqvve~lq~~~ivp  225 (627)
T KOG4238|consen  203 NLSTVSDCVQQVVELLQEQNIVP  225 (627)
T ss_pred             CCchHHHHHHHHHHHHHhcCCCh
Confidence            78899999999999999988764

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.90  E-value=2.3e-23  Score=175.04  Aligned_cols=180  Identities=58%  Similarity=0.994  Sum_probs=156.0

Q ss_pred             eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHH
Q 023675           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAK  168 (279)
Q Consensus        89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~  168 (279)
                      +++.++.+...++|++++|+|++||||||+++.|.+.+..++.+.+++++|++++.+....+|..+++..++..+..++.
T Consensus         5 ~~~~~~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T TIGR00455         5 ITKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAK   84 (184)
T ss_pred             CCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHH
Confidence            45556667788999999999999999999999999998655556789999999887777778888888888888888888


Q ss_pred             HHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCce
Q 023675          169 LFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEI  248 (279)
Q Consensus       169 ~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~  248 (279)
                      .+...|..++.++..+....|+.++.++...+|+.+|+++|.+.+.+|..++++...+.+++..+...+.+||+|..+++
T Consensus        85 ~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~y~~p~~adl  164 (184)
T TIGR00455        85 LFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEV  164 (184)
T ss_pred             HHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCCCCCCCCCcE
Confidence            88888999999988888888999999888767888999999999999988788876677888888888999998888999


Q ss_pred             EEEccCCCCCCHHHHHHHHHHHH
Q 023675          249 VLKQMGDDCPSPADMVETVVSYL  271 (279)
Q Consensus       249 ~i~~~~~~~~~~~e~~~~Il~~l  271 (279)
                      +|++   +..++++++++|+.+|
T Consensus       165 ~Idt---~~~~~~~~~~~i~~~l  184 (184)
T TIGR00455       165 VLDT---DQNDREECVGQIIEKL  184 (184)
T ss_pred             EEEC---CCCCHHHHHHHHHHhC
Confidence            9999   7889999999998764

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.89  E-value=6.7e-22  Score=164.77  Aligned_cols=173  Identities=51%  Similarity=0.861  Sum_probs=141.3

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA  179 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~  179 (279)
                      ++|++++|+|++||||||+++.|++.+...+...+++|+|.+++.+...+.+..+++..+++.+..++..+...|..++.
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~   81 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV   81 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            68999999999999999999999999954444466799999877666666777888777777777777766666776666


Q ss_pred             ccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCC
Q 023675          180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPS  259 (279)
Q Consensus       180 ~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~  259 (279)
                      +..++....++.++.+..  .+..+|+++|.+.+.+|..++++...+.+++..++..+.+||.|..+++++++   +..+
T Consensus        82 ~~~~~~~~~~~~l~~~~~--~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~~---~~~~  156 (175)
T PRK00889         82 SAISPYRETREEVRANIG--NFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECRT---DLES  156 (175)
T ss_pred             ecCCCCHHHHHHHHhhcC--CeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEEC---CCCC
Confidence            666666666666766653  56779999999999999877788766678888888899999988778899998   7889


Q ss_pred             HHHHHHHHHHHHHhCCCc
Q 023675          260 PADMVETVVSYLDENGFL  277 (279)
Q Consensus       260 ~~e~~~~Il~~l~~~~~~  277 (279)
                      +++++++|+++|...|++
T Consensus       157 ~~~~~~~i~~~l~~~~~~  174 (175)
T PRK00889        157 LEESVDKVLQKLEELGYL  174 (175)
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            999999999999988765

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=3e-22  Score=192.51  Aligned_cols=163  Identities=20%  Similarity=0.207  Sum_probs=113.1

Q ss_pred             ccCccccccccccccchhhhhhhhcccccccccccccccCCCCeEEeecceeecCCc--------ceeccCCeEEEEEcC
Q 023675           39 SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGL  110 (279)
Q Consensus        39 ~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------sl~i~~g~~i~lvG~  110 (279)
                      +...-|+.+||.|.+..          .  |...|.  ...+.|+|+||+|+|+.|.        ||+++||++++||||
T Consensus       437 As~rvFel~dr~P~i~~----------~--G~~~p~--~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGP  502 (716)
T KOG0058|consen  437 ASERVFELMDRKPRIPL----------T--GTLAPD--HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGP  502 (716)
T ss_pred             hHHHHHHHhccCCCCCC----------C--Cccccc--cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECC
Confidence            34445778888877610          1  222211  3568899999999999875        899999999999999


Q ss_pred             CCChHHHHHHHHHHccccCCccEEEEcCeeccc----ccccCCCCCccc-------------------HHHHHHHHHHHH
Q 023675          111 SGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------------------RVENIRRIGEVA  167 (279)
Q Consensus       111 sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~~~~~~~~~~-------------------~~~~~~~v~~~~  167 (279)
                      |||||||++++|.++| +|.+|.|.+||.++++    .+...+++..++                   ..+.+...++.+
T Consensus       503 SGsGKSTiasLL~rfY-~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~A  581 (716)
T KOG0058|consen  503 SGSGKSTIASLLLRFY-DPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMA  581 (716)
T ss_pred             CCCCHHHHHHHHHHhc-CCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHh
Confidence            9999999999999999 9999999999999963    122222221111                   011111111111


Q ss_pred             --HHHH---hCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675          168 --KLFA---DAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       168 --~~~~---~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~  218 (279)
                        +.|-   ..|..    .-+..++++|+|| ++||+++++|.+  ++|||.++.|+.--.
T Consensus       582 Nah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~V--LILDEATSALDaeSE  640 (716)
T KOG0058|consen  582 NAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRV--LILDEATSALDAESE  640 (716)
T ss_pred             ChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCE--EEEechhhhcchhhH
Confidence              1111   11222    2344689999999 999999999988  999999999987653

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.85  E-value=9.7e-21  Score=183.54  Aligned_cols=178  Identities=49%  Similarity=0.806  Sum_probs=151.8

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcc
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVI  176 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  176 (279)
                      ..++|.+|+|+|+|||||||+++.|++.+.. .+...+++|+|.+++.+..+.+|+..++..++.++...+......|..
T Consensus       388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~  467 (568)
T PRK05537        388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGI  467 (568)
T ss_pred             ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCE
Confidence            4567999999999999999999999999954 444468999999988888888999999888888777667666677888


Q ss_pred             hhcccCChHHHHHHHHHHhCCC-CCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCC
Q 023675          177 CIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGD  255 (279)
Q Consensus       177 ~i~~~~~~~~~~r~~ar~l~~~-~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~  255 (279)
                      ++.+..++....|+.++.+++. ..|+++||+.|.+.|.+|..++++...+.+.+..++..|.+||.|..++++|++   
T Consensus       468 vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~p~~Adl~IDt---  544 (568)
T PRK05537        468 AICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEPPANPELVIDT---  544 (568)
T ss_pred             EEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccCCCCCcEEEEC---
Confidence            8888888888888888888875 346679999999999999988877655567788899999999998778999999   


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCcc
Q 023675          256 DCPSPADMVETVVSYLDENGFLR  278 (279)
Q Consensus       256 ~~~~~~e~~~~Il~~l~~~~~~~  278 (279)
                      +..++++++++|+.+|++.|+++
T Consensus       545 ~~~s~~eiv~~Il~~L~~~g~~~  567 (568)
T PRK05537        545 TNVTPDECAHKILLYLEEKGYLR  567 (568)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCC
Confidence            78899999999999999999875

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.84  E-value=3.6e-21  Score=161.66  Aligned_cols=139  Identities=22%  Similarity=0.229  Sum_probs=98.9

Q ss_pred             eEEeecceee-----cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----ccccCCCC
Q 023675           82 ILWHKNSVDK-----RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSF  151 (279)
Q Consensus        82 i~~~~~~~~~-----~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-----~~~~~~~~  151 (279)
                      |+++|+.-+|     ..+.++++++|++++|+||||||||||+++|.++- .+++|.|++||+++..     .++..+++
T Consensus         3 i~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-~~~~G~I~i~g~~~~~~~~~~~~R~~vGm   81 (240)
T COG1126           3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-EPDSGSITVDGEDVGDKKDILKLRRKVGM   81 (240)
T ss_pred             EEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc-CCCCceEEECCEeccchhhHHHHHHhcCe
Confidence            3444554444     45669999999999999999999999999999987 9999999999976632     12233344


Q ss_pred             CcccHH--------HH------------HHHH-HHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675          152 KAEDRV--------EN------------IRRI-GEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVF  205 (279)
Q Consensus       152 ~~~~~~--------~~------------~~~v-~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~  205 (279)
                      .++...        ++            .+.. .....++..-|+.    .+...+|++++|| ++||+++-+|++  ++
T Consensus        82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~v--mL  159 (240)
T COG1126          82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKV--ML  159 (240)
T ss_pred             ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCE--Ee
Confidence            333210        00            0000 1112233333433    3566799999999 999999999988  99


Q ss_pred             EeCCccchhccChhhHHH
Q 023675          206 MDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~  223 (279)
                      +|||++.|++-+....++
T Consensus       160 FDEPTSALDPElv~EVL~  177 (240)
T COG1126         160 FDEPTSALDPELVGEVLD  177 (240)
T ss_pred             ecCCcccCCHHHHHHHHH
Confidence            999999999998877443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.83  E-value=3.7e-21  Score=167.86  Aligned_cols=142  Identities=19%  Similarity=0.163  Sum_probs=101.2

Q ss_pred             CeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc----ccCCCC
Q 023675           81 NILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF  151 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~----~~~~~~  151 (279)
                      .++.++++|+|..+.     ||++++|++++|+||||||||||+|+|+|++ .|.+|+|++||.++.+.-    ...++|
T Consensus         2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l-~p~~G~V~l~g~~i~~~~~kelAk~ia~   80 (258)
T COG1120           2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL-KPKSGEVLLDGKDIASLSPKELAKKLAY   80 (258)
T ss_pred             eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence            367889999998543     9999999999999999999999999999999 899999999999885321    111111


Q ss_pred             Cccc-----------H--------HHHHH-----HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          152 KAED-----------R--------VENIR-----RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       152 ~~~~-----------~--------~~~~~-----~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      -++.           .        ..++.     ....+...+...++..    .+..+|++++|| -+|++++.++++ 
T Consensus        81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~i-  159 (258)
T COG1120          81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPI-  159 (258)
T ss_pred             eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCE-
Confidence            1110           0        00000     0011112222333322    355689999999 789999999998 


Q ss_pred             EEEEeCCccchhccChhhHHHHH
Q 023675          203 EVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                       ++||||++.|+-+.+-.+++.+
T Consensus       160 -LLLDEPTs~LDi~~Q~evl~ll  181 (258)
T COG1120         160 -LLLDEPTSHLDIAHQIEVLELL  181 (258)
T ss_pred             -EEeCCCccccCHHHHHHHHHHH
Confidence             9999999999999887766543

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.82  E-value=1.9e-20  Score=189.33  Aligned_cols=176  Identities=22%  Similarity=0.247  Sum_probs=120.8

Q ss_pred             ccCccccccccccccchhhhhhhhcccccccccccccccCCCCeEEeecceeecCCc--------ceeccCCeEEEEEcC
Q 023675           39 SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGL  110 (279)
Q Consensus        39 ~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------sl~i~~g~~i~lvG~  110 (279)
                      ...--|+.||+.+.+++..        .+.....    ...++|+|+|+.|+|+.|.        ||.+++|++++|||+
T Consensus       320 aa~~I~~~i~~~~~i~~~~--------~~~~~~~----~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~  387 (1228)
T KOG0055|consen  320 AAYRIFETIDRKPSIDPYS--------KGGRVLS----SIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGP  387 (1228)
T ss_pred             chHHHHHHhcCCCCCCccc--------ccCCccc----ccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECC
Confidence            3444577888888773221        0111222    4568999999999999875        899999999999999


Q ss_pred             CCChHHHHHHHHHHccccCCccEEEEcCeeccc----ccccCCCCCcccH-------HHH---------HHHHHHHH---
Q 023675          111 SGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN---------IRRIGEVA---  167 (279)
Q Consensus       111 sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~~~~~~~~~~~-------~~~---------~~~v~~~~---  167 (279)
                      |||||||+.++|+|+| +|.+|.|++||.+++.    +++..++...++.       ++.         ...+.+.+   
T Consensus       388 SGsGKST~i~LL~Rfy-dP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~a  466 (1228)
T KOG0055|consen  388 SGSGKSTLIQLLARFY-DPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAA  466 (1228)
T ss_pred             CCCCHHHHHHHHHHhc-CCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHc
Confidence            9999999999999999 9999999999999863    2333333333221       000         11111111   


Q ss_pred             -------HHHHhC--CcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh---hHHHHHhCCC
Q 023675          168 -------KLFADA--GVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK---GLYKLAREGK  229 (279)
Q Consensus       168 -------~~~~~~--~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~---~l~~~~~~~~  229 (279)
                             .+....  -+..-+..++++++|| ++||+++++|++  ++|||+++.|+.-..+   ..++..+.|+
T Consensus       467 na~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I--LLLDEaTSaLD~~se~~Vq~ALd~~~~gr  539 (1228)
T KOG0055|consen  467 NAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI--LLLDEATSALDAESERVVQEALDKASKGR  539 (1228)
T ss_pred             cHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE--EEecCcccccCHHHHHHHHHHHHHhhcCC
Confidence                   111111  1112344589999999 999999999988  9999999988876544   3445556666

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.82  E-value=3.5e-20  Score=187.43  Aligned_cols=150  Identities=23%  Similarity=0.251  Sum_probs=108.0

Q ss_pred             cCCCCeEEeecceeecCCc--------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----c
Q 023675           77 AKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----G  144 (279)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~~--------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~  144 (279)
                      ...++|+++|+.|+|+.|.        |+++++|++++|||||||||||+..+|.|+| +|..|.|.+||+++++    +
T Consensus       983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY-dp~~G~V~IDg~dik~lnl~~ 1061 (1228)
T KOG0055|consen  983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY-DPDAGKVKIDGVDIKDLNLKW 1061 (1228)
T ss_pred             cceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCCeEEECCcccccCCHHH
Confidence            4568899999999999877        8999999999999999999999999999999 9999999999999963    2


Q ss_pred             cccCCCCCcccH-------HHH---------HHHHHHHHHHHHhC--------Cc----chhcccCChHHHHH-HHHHHh
Q 023675          145 LNRDLSFKAEDR-------VEN---------IRRIGEVAKLFADA--------GV----ICIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       145 ~~~~~~~~~~~~-------~~~---------~~~v~~~~~~~~~~--------~~----~~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ++..+++..++.       +++         ...+.+.+.+.+.+        |+    ..-+..++++|+|| ++||++
T Consensus      1062 LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi 1141 (1228)
T KOG0055|consen 1062 LRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI 1141 (1228)
T ss_pred             HHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH
Confidence            222222222211       111         11122222221111        21    12355689999999 999999


Q ss_pred             CCCCCccEEEEeCCccchhccCh---hhHHHHHhCCC
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDP---KGLYKLAREGK  229 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~---~~l~~~~~~~~  229 (279)
                      +++|++  ++|||.++.|+..-.   +.-+++.+.++
T Consensus      1142 lRnPkI--LLLDEATSALDseSErvVQeALd~a~~gR 1176 (1228)
T KOG0055|consen 1142 LRNPKI--LLLDEATSALDSESERVVQEALDRAMEGR 1176 (1228)
T ss_pred             HcCCCe--eeeeccchhhhhhhHHHHHHHHHHhhcCC
Confidence            999998  999999998876544   33444555564

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.81  E-value=5.4e-20  Score=157.88  Aligned_cols=139  Identities=19%  Similarity=0.242  Sum_probs=99.0

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK  152 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~  152 (279)
                      |+|+|++..|.+     +.||++++|++++|+|||||||||++++|.+++ .|++|.|+++|.+++..    ++..++|.
T Consensus         2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi-ept~G~I~i~g~~i~~~d~~~LRr~IGYv   80 (309)
T COG1125           2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI-EPTSGEILIDGEDISDLDPVELRRKIGYV   80 (309)
T ss_pred             ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc-CCCCceEEECCeecccCCHHHHHHhhhhh
Confidence            567777777764     449999999999999999999999999999999 99999999999998642    23333332


Q ss_pred             ccc-----------------------HHHHHHHHHHHHHHHHh-C--CcchhcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675          153 AED-----------------------RVENIRRIGEVAKLFAD-A--GVICIACLISPYRKDR-DACRSMLPEGDFIEVF  205 (279)
Q Consensus       153 ~~~-----------------------~~~~~~~v~~~~~~~~~-~--~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~  205 (279)
                      -++                       ..+..+++.++..++.- .  -..-+...+|++++|| -.+|+++.+|++  ++
T Consensus        81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i--lL  158 (309)
T COG1125          81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI--LL  158 (309)
T ss_pred             hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe--Ee
Confidence            221                       11112222222222211 0  0112455689999999 899999999998  99


Q ss_pred             EeCCccchhccChhhHHH
Q 023675          206 MDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~  223 (279)
                      +|||+..++.-.++.+..
T Consensus       159 MDEPFgALDpI~R~~lQ~  176 (309)
T COG1125         159 MDEPFGALDPITRKQLQE  176 (309)
T ss_pred             ecCCccccChhhHHHHHH
Confidence            999999998876655443

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.81  E-value=9.5e-20  Score=164.75  Aligned_cols=139  Identities=20%  Similarity=0.215  Sum_probs=104.5

Q ss_pred             CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--cc------
Q 023675           81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NR------  147 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~------  147 (279)
                      .|+++|+..+|.+.     .|+++..|++++|+|||||||||++++|+|+. .|++|.|+++|.++.+.-  ..      
T Consensus         3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe-~~~~G~I~i~g~~vt~l~P~~R~iamVF   81 (338)
T COG3839           3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE-EPTSGEILIDGRDVTDLPPEKRGIAMVF   81 (338)
T ss_pred             EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhHCCEEEEe
Confidence            36777887777765     59999999999999999999999999999999 999999999999986411  01      


Q ss_pred             -------------CCCCCccc----HHHHHHHHHHHHHHHHhCCcc-hhcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675          148 -------------DLSFKAED----RVENIRRIGEVAKLFADAGVI-CIACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (279)
Q Consensus       148 -------------~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~-~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~  208 (279)
                                   ++.|...-    ..+..+++.+++..+.-..+. .....+|++++|| +++|+++.+|++  +++||
T Consensus        82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v--~L~DE  159 (338)
T COG3839          82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV--FLLDE  159 (338)
T ss_pred             CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE--EEecC
Confidence                         11222111    123344555555554322222 2466799999999 999999999998  99999


Q ss_pred             CccchhccChhhHH
Q 023675          209 PLQVCEARDPKGLY  222 (279)
Q Consensus       209 p~~~l~~R~~~~l~  222 (279)
                      |++.|+.++...+-
T Consensus       160 PlSnLDa~lR~~mr  173 (338)
T COG3839         160 PLSNLDAKLRVLMR  173 (338)
T ss_pred             chhHhhHHHHHHHH
Confidence            99999998876543

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.9e-19  Score=154.90  Aligned_cols=130  Identities=21%  Similarity=0.253  Sum_probs=90.9

Q ss_pred             eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCccc--HHHHHH-----
Q 023675           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED--RVENIR-----  161 (279)
Q Consensus        89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~--~~~~~~-----  161 (279)
                      +...++.||++.+||+++|+||||||||||+|+|+|+. .|++|+|.++|+.+. ....+.+|.+++  +..|..     
T Consensus        16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~-~p~~G~V~~~g~~v~-~p~~~~~~vFQ~~~LlPW~Tv~~NV   93 (248)
T COG1116          16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE-KPTSGEVLLDGRPVT-GPGPDIGYVFQEDALLPWLTVLDNV   93 (248)
T ss_pred             eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCcccC-CCCCCEEEEeccCcccchhhHHhhh
Confidence            33445669999999999999999999999999999999 999999999999872 211111211111  000000     


Q ss_pred             -------------HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675          162 -------------RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (279)
Q Consensus       162 -------------~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~  222 (279)
                                   ........+...|+.    .....+|++++|| ++||+++.+|++  ++||||+..|+.-.+..+.
T Consensus        94 ~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l--LLlDEPFgALDalTR~~lq  170 (248)
T COG1116          94 ALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL--LLLDEPFGALDALTREELQ  170 (248)
T ss_pred             eehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE--EEEcCCcchhhHHHHHHHH
Confidence                         001122222333332    2455689999999 999999999998  9999999999887655433

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.3e-19  Score=154.07  Aligned_cols=142  Identities=18%  Similarity=0.216  Sum_probs=101.8

Q ss_pred             CeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-------cc
Q 023675           81 NILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NR  147 (279)
Q Consensus        81 ~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-------~~  147 (279)
                      .|++++++.+|+.+      .||.+++||+++|+|+||||||||+++|.++. +++.|+|+++|.++....       ..
T Consensus         3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~-d~t~G~i~~~g~~i~~~~~k~lr~~r~   81 (258)
T COG3638           3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-DPTSGEILFNGVQITKLKGKELRKLRR   81 (258)
T ss_pred             eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc-CCCcceEEecccchhccchHHHHHHHH
Confidence            47888998889543      39999999999999999999999999999987 999999999998874321       22


Q ss_pred             CCCCCcccH-------------------HHHHHH---------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHH
Q 023675          148 DLSFKAEDR-------------------VENIRR---------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRS  194 (279)
Q Consensus       148 ~~~~~~~~~-------------------~~~~~~---------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~  194 (279)
                      .+++.++..                   ..+++.         ..+....+...|+..    -...+|++++|| ++||+
T Consensus        82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARa  161 (258)
T COG3638          82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARA  161 (258)
T ss_pred             hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHH
Confidence            233322211                   000000         011112222333332    234688999999 99999


Q ss_pred             hCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       195 l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++.+|++  ++-|||.+.|++...+.+++.+
T Consensus       162 L~Q~pki--ILADEPvasLDp~~a~~Vm~~l  190 (258)
T COG3638         162 LVQQPKI--ILADEPVASLDPESAKKVMDIL  190 (258)
T ss_pred             HhcCCCE--EecCCcccccChhhHHHHHHHH
Confidence            9999998  9999999999999988755443

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.80  E-value=1.1e-19  Score=179.50  Aligned_cols=146  Identities=21%  Similarity=0.207  Sum_probs=107.4

Q ss_pred             cCCCCeEEeecceeecCCc-------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----cc
Q 023675           77 AKSTNILWHKNSVDKRDRQ-------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GL  145 (279)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~~-------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~  145 (279)
                      ...+.|+++|++|+|..+.       |+++++|+.++|+|.||||||||+|+|.|+| .|..|.|++||.|+.+    .+
T Consensus       467 ~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~~G~I~~dg~dl~~i~~~~l  545 (709)
T COG2274         467 KLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQQGRILLDGVDLNDIDLASL  545 (709)
T ss_pred             ccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEeHHhcCHHHH
Confidence            4568899999999998653       8999999999999999999999999999999 9999999999999842    12


Q ss_pred             ccCCCCCcccH-------H------------HHHHHHHHHHH---HHH--hCCc----chhcccCChHHHHH-HHHHHhC
Q 023675          146 NRDLSFKAEDR-------V------------ENIRRIGEVAK---LFA--DAGV----ICIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       146 ~~~~~~~~~~~-------~------------~~~~~v~~~~~---~~~--~~~~----~~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      +..+++.+++.       +            +.+....+.+.   ...  ..|+    ..-+..+|+||+|| .+||+++
T Consensus       546 R~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl  625 (709)
T COG2274         546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL  625 (709)
T ss_pred             HhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc
Confidence            22233322211       0            11111111111   111  1121    23456789999999 9999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .+|++  ++|||+++.++....+.+++.+
T Consensus       626 ~~P~I--LlLDEaTSaLD~~sE~~I~~~L  652 (709)
T COG2274         626 SKPKI--LLLDEATSALDPETEAIILQNL  652 (709)
T ss_pred             cCCCE--EEEeCcccccCHhHHHHHHHHH
Confidence            99998  9999999999999888766543

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.80  E-value=2.2e-19  Score=156.04  Aligned_cols=142  Identities=21%  Similarity=0.229  Sum_probs=104.4

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc-cCCCCCcc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKAE  154 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~-~~~~~~~~  154 (279)
                      .|+++|++|+|..     +.||++.+|++++|+||||||||||+|+|.|++ .|.+|+|.+.|.+..+... ..++|.++
T Consensus         4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll-~p~~G~i~~~g~~~~~~~~~~~IgYVPQ   82 (254)
T COG1121           4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL-KPSSGEIKIFGKPVRKRRKRLRIGYVPQ   82 (254)
T ss_pred             EEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCcceEEEccccccccccCCeEEEcCc
Confidence            4788999999985     349999999999999999999999999999999 9999999999987643321 12333333


Q ss_pred             cH---------------------HHHHHH-----HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          155 DR---------------------VENIRR-----IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       155 ~~---------------------~~~~~~-----v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      ..                     ..++++     -..+...+..-|...    .+..+|++++|| -+||+++.+|++  
T Consensus        83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l--  160 (254)
T COG1121          83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL--  160 (254)
T ss_pred             ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE--
Confidence            11                     001110     012223333334333    345689999999 889999999999  


Q ss_pred             EEEeCCccchhccChhhHHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++||||+..++....+.+++.+
T Consensus       161 llLDEP~~gvD~~~~~~i~~lL  182 (254)
T COG1121         161 LLLDEPFTGVDVAGQKEIYDLL  182 (254)
T ss_pred             EEecCCcccCCHHHHHHHHHHH
Confidence            9999999999999888766543

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.79  E-value=3e-19  Score=153.02  Aligned_cols=134  Identities=21%  Similarity=0.268  Sum_probs=96.5

Q ss_pred             eecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------cccCCCCCcccH-----
Q 023675           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLSFKAEDR-----  156 (279)
Q Consensus        90 ~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------~~~~~~~~~~~~-----  156 (279)
                      ......+|++++|++++|+||||||||||+++|.++. .|++|.|+++|.++...        .+..++|.++..     
T Consensus        19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~   97 (226)
T COG1136          19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-KPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD   97 (226)
T ss_pred             EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence            3455669999999999999999999999999999999 88999999999887421        112233333311     


Q ss_pred             ---HHHHH------------HHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675          157 ---VENIR------------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (279)
Q Consensus       157 ---~~~~~------------~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~  215 (279)
                         .+++.            .......++...|+.     .....+|++++|| ++||+++.+|++  |+.|||+..|+.
T Consensus        98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~i--ilADEPTgnLD~  175 (226)
T COG1136          98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKI--ILADEPTGNLDS  175 (226)
T ss_pred             CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCe--EEeeCccccCCh
Confidence               11111            111122223332443     2356789999999 999999999998  999999999999


Q ss_pred             cChhhHHHHHh
Q 023675          216 RDPKGLYKLAR  226 (279)
Q Consensus       216 R~~~~l~~~~~  226 (279)
                      ...+.+++.++
T Consensus       176 ~t~~~V~~ll~  186 (226)
T COG1136         176 KTAKEVLELLR  186 (226)
T ss_pred             HHHHHHHHHHH
Confidence            98877655433

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.79  E-value=1.4e-18  Score=141.37  Aligned_cols=149  Identities=68%  Similarity=1.138  Sum_probs=126.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCC
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS  183 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~  183 (279)
                      +++|+|++||||||+++.|++.+..++...+++++|.+++.+....++.++++.+.++.+...+..+...|..+++++..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~   80 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS   80 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence            47899999999999999999998655566788999999877666667887777777777666666666778888888887


Q ss_pred             hHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675          184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQ  252 (279)
Q Consensus       184 ~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~  252 (279)
                      .....|..++.++...++..+++++|.+.+.+|..+++|.....+++..+.++..+|++|..+++++++
T Consensus        81 ~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (149)
T cd02027          81 PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKGLYKKARAGEIKGFTGIDDPYEAPENPDLVLDT  149 (149)
T ss_pred             CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCchhhHHHHhCCCCCCccccCCCCCCCCCCeeEecC
Confidence            777788888888876678889999999999999999999999999999999999999988778887764

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.79  E-value=1e-18  Score=143.26  Aligned_cols=138  Identities=18%  Similarity=0.203  Sum_probs=97.1

Q ss_pred             EEeecceeecCCc---ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---------c-----
Q 023675           83 LWHKNSVDKRDRQ---QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---------L-----  145 (279)
Q Consensus        83 ~~~~~~~~~~~~~---sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---------~-----  145 (279)
                      .+.++.|+|..-.   ++.++.|++++|+||||||||||+|+++|+. .|.+|.|+++|++....         +     
T Consensus         3 ~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnN   81 (231)
T COG3840           3 ALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE-TPASGEILINGVDHTASPPAERPVSMLFQENN   81 (231)
T ss_pred             cccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhcc-CCCCceEEEcCeecCcCCcccCChhhhhhccc
Confidence            4556677776543   7899999999999999999999999999999 99999999999987421         0     


Q ss_pred             ---------ccCCCCCccc--HHHHHHHHHHHHHHHHhCCc-chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675          146 ---------NRDLSFKAED--RVENIRRIGEVAKLFADAGV-ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (279)
Q Consensus       146 ---------~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~-~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~  212 (279)
                               +..++.++.-  ..+...++..++....-.+. .-+...+|+++++| +++|.++++-++  ++||||++.
T Consensus        82 LFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pi--lLLDEPFsA  159 (231)
T COG3840          82 LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPI--LLLDEPFSA  159 (231)
T ss_pred             cchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCe--EEecCchhh
Confidence                     0112222211  11222233333222111111 12455689999999 899999998777  899999999


Q ss_pred             hhccChhhHHH
Q 023675          213 CEARDPKGLYK  223 (279)
Q Consensus       213 l~~R~~~~l~~  223 (279)
                      +++.++..+..
T Consensus       160 LdP~LR~eMl~  170 (231)
T COG3840         160 LDPALRAEMLA  170 (231)
T ss_pred             cCHHHHHHHHH
Confidence            99999887554

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.79  E-value=5.7e-18  Score=141.17  Aligned_cols=169  Identities=34%  Similarity=0.588  Sum_probs=129.3

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchh
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICI  178 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i  178 (279)
                      .++|.+++|+|+|||||||+++.|++.+..++.+.+++++|.+++.+. ..++......+...+...+...+...|..++
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI   82 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG-HYGYDKQSRIEMALKRAKLAKFLADQGMIVI   82 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            468999999999999999999999999976778899999998875432 2234443333443344444554545676677


Q ss_pred             cccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCC-
Q 023675          179 ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDC-  257 (279)
Q Consensus       179 ~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~-  257 (279)
                      .++.+.....++.++.++..  ++.+||++|.+.+.+|..++++.....+++..+...+.++|++. ++++|++   +. 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~--~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~-Ad~vI~~---~~~  156 (176)
T PRK05541         83 VTTISMFDEIYAYNRKHLPN--YFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPK-ADLVIDN---SCR  156 (176)
T ss_pred             EEeCCcHHHHHHHHHhhcCC--eEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCC-CCEEEeC---CCC
Confidence            77666555556667766643  45699999999999999888887777788888999999999875 7999998   55 


Q ss_pred             CCHHHHHHHHHHHHHhC
Q 023675          258 PSPADMVETVVSYLDEN  274 (279)
Q Consensus       258 ~~~~e~~~~Il~~l~~~  274 (279)
                      .++++.+++|+++|+.+
T Consensus       157 ~~~~~~v~~i~~~l~~~  173 (176)
T PRK05541        157 TSLDEKVDLILNKLKLR  173 (176)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            58999999999998764

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.78  E-value=6.4e-19  Score=160.16  Aligned_cols=140  Identities=22%  Similarity=0.247  Sum_probs=98.8

Q ss_pred             CeEEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCc
Q 023675           81 NILWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~  153 (279)
                      .+++++++-+|.     ++.||++++|+++.|.|||||||||++++|+|+. .|++|.|+++|.++..--  ..++++.+
T Consensus         5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-~p~~G~I~l~G~~i~~lpp~kR~ig~VF   83 (352)
T COG3842           5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-QPSSGEILLDGEDITDVPPEKRPIGMVF   83 (352)
T ss_pred             eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhhcccceee
Confidence            355666655555     5569999999999999999999999999999999 999999999999985210  11122211


Q ss_pred             ccH------------------------HHHHHHHHHHHHHHHhCCc-chhcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675          154 EDR------------------------VENIRRIGEVAKLFADAGV-ICIACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (279)
Q Consensus       154 ~~~------------------------~~~~~~v~~~~~~~~~~~~-~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld  207 (279)
                      ++.                        .+..+++.+...+..-.++ .-....+|++++|| ++||+++.+|++  ++||
T Consensus        84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~v--LLLD  161 (352)
T COG3842          84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKV--LLLD  161 (352)
T ss_pred             cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcch--hhhc
Confidence            111                        1112233333322221111 12455688999999 999999999988  9999


Q ss_pred             CCccchhccChhhHHH
Q 023675          208 VPLQVCEARDPKGLYK  223 (279)
Q Consensus       208 ~p~~~l~~R~~~~l~~  223 (279)
                      ||++.|+.+++..+..
T Consensus       162 EPlSaLD~kLR~~mr~  177 (352)
T COG3842         162 EPLSALDAKLREQMRK  177 (352)
T ss_pred             CcccchhHHHHHHHHH
Confidence            9999999998776543

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.78  E-value=6.7e-19  Score=150.13  Aligned_cols=139  Identities=22%  Similarity=0.225  Sum_probs=97.9

Q ss_pred             CCCeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cc
Q 023675           79 STNILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LN  146 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~  146 (279)
                      ...|+++++.++|.++.     +|++++|++++++|+||||||||++++.|++ .|++|+|+++|.++...       +.
T Consensus         6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll-~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL-RPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC-CCCCCeEEEcCcchhccCHHHHHHHH
Confidence            34689999999998655     9999999999999999999999999999999 99999999999998421       11


Q ss_pred             cCCCCCccc--------HHHH------------HHHHHHHHHH-HHhCCcchh-----cccCChHHHHH-HHHHHhCCCC
Q 023675          147 RDLSFKAED--------RVEN------------IRRIGEVAKL-FADAGVICI-----ACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       147 ~~~~~~~~~--------~~~~------------~~~v~~~~~~-~~~~~~~~i-----~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      ...++-++.        ..++            ...+.+++.. +..-|+...     ..-+|++.+.| ++||+++-+|
T Consensus        85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP  164 (263)
T COG1127          85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP  164 (263)
T ss_pred             hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence            111211110        0000            0011112211 222333322     33477788888 8999999999


Q ss_pred             CccEEEEeCCccchhccChhh
Q 023675          200 DFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      ++  +++|||+..+++-....
T Consensus       165 el--l~~DEPtsGLDPI~a~~  183 (263)
T COG1127         165 EL--LFLDEPTSGLDPISAGV  183 (263)
T ss_pred             CE--EEecCCCCCCCcchHHH
Confidence            98  99999999999876544

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.78  E-value=3.2e-19  Score=172.79  Aligned_cols=144  Identities=24%  Similarity=0.188  Sum_probs=103.4

Q ss_pred             CCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCC
Q 023675           80 TNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLS  150 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~  150 (279)
                      +.|+++|++|+|+++      .||++++|+.++|+|+||||||||+++|+|++ +|++|.|++||.++++.   ++..++
T Consensus       333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~i~g~~i~~~~~~lr~~i~  411 (529)
T TIGR02868       333 PTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-DPLQGEVTLDGVSVSSLQDELRRRIS  411 (529)
T ss_pred             ceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhHHHHHHhheE
Confidence            469999999999753      28999999999999999999999999999999 89999999999887532   111112


Q ss_pred             CCccc-------------------HHHHHHHHHHHH---HHHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCCCc
Q 023675          151 FKAED-------------------RVENIRRIGEVA---KLFA--DAGVI----CIACLISPYRKDR-DACRSMLPEGDF  201 (279)
Q Consensus       151 ~~~~~-------------------~~~~~~~v~~~~---~~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~  201 (279)
                      +.+++                   ..+.+....+.+   ....  ..|+.    ..+..+|+|++|| .+||+++++|++
T Consensus       412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i  491 (529)
T TIGR02868       412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI  491 (529)
T ss_pred             EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence            11111                   011111111111   1111  11222    2345689999999 999999999998


Q ss_pred             cEEEEeCCccchhccChhhHHHHHh
Q 023675          202 IEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       202 i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                        ++||||++.++....+.+++.+.
T Consensus       492 --liLDE~TSaLD~~te~~I~~~l~  514 (529)
T TIGR02868       492 --LLLDEPTEHLDAGTESELLEDLL  514 (529)
T ss_pred             --EEEeCCcccCCHHHHHHHHHHHH
Confidence              99999999999988877776554

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.77  E-value=3.7e-19  Score=164.37  Aligned_cols=170  Identities=16%  Similarity=0.211  Sum_probs=115.2

Q ss_pred             cCCCCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----ccc
Q 023675           77 AKSTNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLN  146 (279)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~  146 (279)
                      -..+.|+|+|++|.|..+.      ||.+++|++++||||||+||||++++|-+++ +..+|.|.+||+|++.    .++
T Consensus       533 ~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-dv~sGsI~iDgqdIrnvt~~SLR  611 (790)
T KOG0056|consen  533 VTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-DVNSGSITIDGQDIRNVTQSSLR  611 (790)
T ss_pred             ccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-hccCceEEEcCchHHHHHHHHHH
Confidence            4568899999999997644      9999999999999999999999999999999 8999999999999962    334


Q ss_pred             cCCCCCcccH--------------------HHHHHHHHHHHH------HHHh---CCcchhcccCChHHHHH-HHHHHhC
Q 023675          147 RDLSFKAEDR--------------------VENIRRIGEVAK------LFAD---AGVICIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       147 ~~~~~~~~~~--------------------~~~~~~v~~~~~------~~~~---~~~~~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      ..++..+++.                    .+.++. ++.++      .|.+   ..+..-+-.++++++|| +++|.++
T Consensus       612 s~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaA-AkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL  690 (790)
T KOG0056|consen  612 SSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAA-AKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL  690 (790)
T ss_pred             HhcCcccCcceeecceeeeheeecCCCCChHHHHHH-HHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence            4444444321                    111111 11111      1111   01112333578899999 9999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHH---HHhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYK---LAREGKVKGFTGIDDPYEPPLNCEIVLKQ  252 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~---~~~~~~~~~~~~~r~~~~~~~~a~~~i~~  252 (279)
                      ++|.+  |+|||.++.++....+.+.+   +...++-.....  +.+....++|.++..
T Consensus       691 K~P~i--IlLDEATSALDT~tER~IQaaL~rlca~RTtIVvA--HRLSTivnAD~ILvi  745 (790)
T KOG0056|consen  691 KAPSI--ILLDEATSALDTNTERAIQAALARLCANRTTIVVA--HRLSTIVNADLILVI  745 (790)
T ss_pred             cCCcE--EEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEe--eeehheecccEEEEE
Confidence            99988  99999999998877665443   333444332222  222333346655544

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.77  E-value=3.8e-18  Score=140.72  Aligned_cols=137  Identities=21%  Similarity=0.262  Sum_probs=102.9

Q ss_pred             eEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccC
Q 023675           82 ILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRD  148 (279)
Q Consensus        82 i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~  148 (279)
                      |+|++|+-.|...      .||++++|++++|+|||||||||++|+|.+.. .|++|.|+++|.++...       ++..
T Consensus         2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-~pt~G~i~~~~~dl~~l~~~~iP~LRR~   80 (223)
T COG2884           2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPTRGKILVNGHDLSRLKGREIPFLRRQ   80 (223)
T ss_pred             eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh-cCCCceEEECCeecccccccccchhhhe
Confidence            6778888888653      38999999999999999999999999999999 99999999999998532       2233


Q ss_pred             CCCCcccH-----------------------HHHHHHHHHHHHHHHhCCc----chhcccCChHHHHH-HHHHHhCCCCC
Q 023675          149 LSFKAEDR-----------------------VENIRRIGEVAKLFADAGV----ICIACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       149 ~~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      ++..+++.                       .+..+++...   +..-|+    ......+|++++|| .+||+++.+|+
T Consensus        81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~---L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~  157 (223)
T COG2884          81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEV---LDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA  157 (223)
T ss_pred             eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHH---HHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence            33333322                       1222222222   222222    23566789999999 99999999998


Q ss_pred             ccEEEEeCCccchhccChhhHHHH
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +  ++.|||+..+++....++++.
T Consensus       158 v--LlADEPTGNLDp~~s~~im~l  179 (223)
T COG2884         158 V--LLADEPTGNLDPDLSWEIMRL  179 (223)
T ss_pred             e--EeecCCCCCCChHHHHHHHHH
Confidence            8  899999999999998875543

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.76  E-value=2.1e-18  Score=151.87  Aligned_cols=135  Identities=20%  Similarity=0.240  Sum_probs=96.5

Q ss_pred             eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCCCCCccc------
Q 023675           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFKAED------  155 (279)
Q Consensus        89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~~~~~~~------  155 (279)
                      +.+.++.||++++|++++|+|.||+|||||.+++.++- .|++|.|++||+++..-       .+..+++.++.      
T Consensus        19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le-~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLss   97 (339)
T COG1135          19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE-RPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS   97 (339)
T ss_pred             eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC-CCCCceEEEcCEecccCChHHHHHHHhhccEEecccccccc
Confidence            34445569999999999999999999999999999977 99999999999888421       12223322221      


Q ss_pred             -----------------HHHHHHHHHHHHHHHHh-CCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675          156 -----------------RVENIRRIGEVAKLFAD-AGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (279)
Q Consensus       156 -----------------~~~~~~~v~~~~~~~~~-~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R  216 (279)
                                       ..+...++.++..+..- .-...+...+|++++|| .+||+++.+|++  +++||+++.|++.
T Consensus        98 rTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~i--LL~DEaTSALDP~  175 (339)
T COG1135          98 RTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKI--LLCDEATSALDPE  175 (339)
T ss_pred             chHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCE--EEecCccccCChH
Confidence                             11222233333222111 01123566799999999 999999999998  9999999999999


Q ss_pred             ChhhHHHHHh
Q 023675          217 DPKGLYKLAR  226 (279)
Q Consensus       217 ~~~~l~~~~~  226 (279)
                      ..+.+++.++
T Consensus       176 TT~sIL~LL~  185 (339)
T COG1135         176 TTQSILELLK  185 (339)
T ss_pred             HHHHHHHHHH
Confidence            8887555433

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.76  E-value=5.5e-18  Score=144.93  Aligned_cols=139  Identities=22%  Similarity=0.270  Sum_probs=98.0

Q ss_pred             eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----ccc
Q 023675           82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNR  147 (279)
Q Consensus        82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~  147 (279)
                      ++.+|+++.|..         +.||++.+|++++|+|+||||||||+++|+|+. .|..|.|.++|..+...     ...
T Consensus         4 l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~-~p~~G~I~~~G~~~~~~~~~~~~~~   82 (252)
T COG1124           4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE-KPSSGSILLDGKPLAPKKRAKAFYR   82 (252)
T ss_pred             EEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc-CCCCceEEECCcccCccccchhhcc
Confidence            456666666654         349999999999999999999999999999998 89999999999766432     111


Q ss_pred             CCCCCccc-------HHHH---HHH----------HHHHHHHHHhCCcch-----hcccCChHHHHH-HHHHHhCCCCCc
Q 023675          148 DLSFKAED-------RVEN---IRR----------IGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDF  201 (279)
Q Consensus       148 ~~~~~~~~-------~~~~---~~~----------v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l~~~~~~  201 (279)
                      .+.+.+++       ++..   +..          ..++..++...|+..     ....+|++++|| +++|++..+|++
T Consensus        83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pkl  162 (252)
T COG1124          83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKL  162 (252)
T ss_pred             ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCE
Confidence            11111111       1100   000          011333444444432     344589999999 999999999999


Q ss_pred             cEEEEeCCccchhccChhhHHH
Q 023675          202 IEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       202 i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                        +++|||++.|+...+..+++
T Consensus       163 --LIlDEptSaLD~siQa~Iln  182 (252)
T COG1124         163 --LILDEPTSALDVSVQAQILN  182 (252)
T ss_pred             --EEecCchhhhcHHHHHHHHH
Confidence              99999999999998876443

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.76  E-value=3.5e-18  Score=145.14  Aligned_cols=141  Identities=18%  Similarity=0.244  Sum_probs=102.5

Q ss_pred             eEEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCC
Q 023675           82 ILWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSF  151 (279)
Q Consensus        82 i~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~  151 (279)
                      ++++++++.|.     .+.||++++|++++|+|+||+||||++++|+|.. .+.+|+|.++|.|+...     ....+.|
T Consensus         4 L~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~-~~~~G~I~~~G~dit~~p~~~r~r~Gi~~   82 (237)
T COG0410           4 LEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV-RPRSGRIIFDGEDITGLPPHERARLGIAY   82 (237)
T ss_pred             eeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence            45556555554     4669999999999999999999999999999999 88899999999999532     2233445


Q ss_pred             CcccHH--------HHH-------------HH-HHHHHHHHHh--CCcchhcccCChHHHHH-HHHHHhCCCCCccEEEE
Q 023675          152 KAEDRV--------ENI-------------RR-IGEVAKLFAD--AGVICIACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (279)
Q Consensus       152 ~~~~~~--------~~~-------------~~-v~~~~~~~~~--~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~l  206 (279)
                      .++.++        +++             .. +.++..+|..  .-.......+|++++|+ +++|+++.+|++  ++|
T Consensus        83 VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl--LLL  160 (237)
T COG0410          83 VPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL--LLL  160 (237)
T ss_pred             CcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE--EEe
Confidence            555331        100             00 2223333321  11122455688888888 999999999998  999


Q ss_pred             eCCccchhccChhhHHHHH
Q 023675          207 DVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       207 d~p~~~l~~R~~~~l~~~~  225 (279)
                      |||.+.+.+...+.+++.+
T Consensus       161 DEPs~GLaP~iv~~I~~~i  179 (237)
T COG0410         161 DEPSEGLAPKIVEEIFEAI  179 (237)
T ss_pred             cCCccCcCHHHHHHHHHHH
Confidence            9999999999998877543

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.75  E-value=1e-18  Score=174.89  Aligned_cols=146  Identities=18%  Similarity=0.148  Sum_probs=105.6

Q ss_pred             CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.|+++|++|+|+..       .||++++|+.++|+|+||||||||+++|+|++ +|.+|.|++||.++++.    ++.
T Consensus       475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~  553 (710)
T TIGR03796       475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY-QPWSGEILFDGIPREEIPREVLAN  553 (710)
T ss_pred             CCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEeHHHCCHHHHHh
Confidence            3579999999999742       28999999999999999999999999999999 89999999999887531    111


Q ss_pred             CCCCCcccH-------------------HHHHHHHHHHH---HHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675          148 DLSFKAEDR-------------------VENIRRIGEVA---KLFAD--AGVI----CIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       148 ~~~~~~~~~-------------------~~~~~~v~~~~---~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      .+++.+++.                   .+.+....+.+   .....  .|+.    ..+..+|+|++|| .++|+++++
T Consensus       554 ~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~  633 (710)
T TIGR03796       554 SVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN  633 (710)
T ss_pred             heeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence            122211110                   11111111111   11111  1222    2345689999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHHhC
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                      |++  ++||||++.++....+.+++.++.
T Consensus       634 p~i--liLDEptS~LD~~te~~i~~~l~~  660 (710)
T TIGR03796       634 PSI--LILDEATSALDPETEKIIDDNLRR  660 (710)
T ss_pred             CCE--EEEECccccCCHHHHHHHHHHHHh
Confidence            998  999999999999988888776654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.75  E-value=1.3e-17  Score=139.65  Aligned_cols=128  Identities=22%  Similarity=0.234  Sum_probs=93.8

Q ss_pred             eecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHH
Q 023675           85 HKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN  159 (279)
Q Consensus        85 ~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~  159 (279)
                      +++++.|..     ..||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++.       .+.....+..
T Consensus         3 ~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~-------~~~~~~~~~~   74 (180)
T cd03214           3 ENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLA-------SLSPKELARK   74 (180)
T ss_pred             eEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECC-------cCCHHHHHHH
Confidence            444555543     448999999999999999999999999999999 899999999998875       2222222222


Q ss_pred             HHHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          160 IRRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       160 ~~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +..+.+   .+...++.    ..+..+++++++| .++++++.+|++  +++|||+..++....+.+++.+
T Consensus        75 i~~~~q---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEP~~~LD~~~~~~~~~~l  140 (180)
T cd03214          75 IAYVPQ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPI--LLLDEPTSHLDIAHQIELLELL  140 (180)
T ss_pred             HhHHHH---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHH
Confidence            233333   22223322    2244578888888 899999999998  9999999999988776655443

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=1.5e-18  Score=162.31  Aligned_cols=147  Identities=18%  Similarity=0.247  Sum_probs=110.1

Q ss_pred             cCCCCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----ccc
Q 023675           77 AKSTNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLN  146 (279)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~  146 (279)
                      ...+.|+|+|++|.|+++.      ||++++|+.++|+|.|||||||++|+|.+++ + .+|.|++||.++.+    .++
T Consensus       347 ~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~-d-~sG~I~IdG~dik~~~~~SlR  424 (591)
T KOG0057|consen  347 LFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF-D-YSGSILIDGQDIKEVSLESLR  424 (591)
T ss_pred             cCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh-c-cCCcEEECCeeHhhhChHHhh
Confidence            3446799999999998644      9999999999999999999999999999999 6 89999999999853    344


Q ss_pred             cCCCCCcccHH----------------HHHHHHHHHHHH------HH--hCCc----chhcccCChHHHHH-HHHHHhCC
Q 023675          147 RDLSFKAEDRV----------------ENIRRIGEVAKL------FA--DAGV----ICIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       147 ~~~~~~~~~~~----------------~~~~~v~~~~~~------~~--~~~~----~~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      .-+++.|++..                .....+.+.+..      +.  ..|.    ...+..++++++|| .++|++++
T Consensus       425 ~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK  504 (591)
T KOG0057|consen  425 QSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK  504 (591)
T ss_pred             hheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence            44566555321                001112222221      11  1132    22344689999999 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                      ++++  +++||+++.++..-..++++.+..
T Consensus       505 da~I--l~~DEaTS~LD~~TE~~i~~~i~~  532 (591)
T KOG0057|consen  505 DAPI--LLLDEATSALDSETEREILDMIMD  532 (591)
T ss_pred             CCCe--EEecCcccccchhhHHHHHHHHHH
Confidence            9988  999999999999888887765543

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.75  E-value=6e-19  Score=150.85  Aligned_cols=143  Identities=16%  Similarity=0.152  Sum_probs=100.5

Q ss_pred             CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-----ccCCCCCcc
Q 023675           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAE  154 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-----~~~~~~~~~  154 (279)
                      .++..++..+.+.++.||++.+|++++|+|||||||||++|+|+|+| .|++|+|.++|+++...-     ...+.-+++
T Consensus         8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ   86 (250)
T COG0411           8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPSSGTVIFRGRDITGLPPHRIARLGIARTFQ   86 (250)
T ss_pred             ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-cCCCceEEECCcccCCCCHHHHHhccceeecc
Confidence            46777888999999999999999999999999999999999999999 999999999999984210     000000000


Q ss_pred             c--------HHH-----------------------HHHH-HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCC
Q 023675          155 D--------RVE-----------------------NIRR-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       155 ~--------~~~-----------------------~~~~-v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      .        ..+                       ..+. ..+...++...++..    ....++.+++.+ +++|+++.
T Consensus        87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~  166 (250)
T COG0411          87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT  166 (250)
T ss_pred             cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence            0        000                       0011 111222222233332    233466666666 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHH
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +|++  ++||||.+.+.......+.+.+
T Consensus       167 ~P~l--LLLDEPaAGln~~e~~~l~~~i  192 (250)
T COG0411         167 QPKL--LLLDEPAAGLNPEETEELAELI  192 (250)
T ss_pred             CCCE--EEecCccCCCCHHHHHHHHHHH
Confidence            9998  9999999999998887765443

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.74  E-value=2e-18  Score=144.29  Aligned_cols=129  Identities=21%  Similarity=0.244  Sum_probs=91.6

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc------ccCCCC
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLSF  151 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~------~~~~~~  151 (279)
                      +++++++.|..     +.+|++.+|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++....      ...+++
T Consensus         2 ~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~   80 (178)
T cd03229           2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGEDLTDLEDELPPLRRRIGM   80 (178)
T ss_pred             EEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccchhHHHHhhcEEE
Confidence            45566666643     348999999999999999999999999999999 899999999998774210      011111


Q ss_pred             CcccHHHHHHHHHHHHHHHHhCCcchhccc-CChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          152 KAEDRVENIRRIGEVAKLFADAGVICIACL-ISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       152 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~-~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .++.           ..++....+..+... +|+++++| .++++++.+|++  +++|||+..++......+++.+
T Consensus        81 ~~q~-----------~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~l--lilDEP~~~LD~~~~~~l~~~l  143 (178)
T cd03229          81 VFQD-----------FALFPHLTVLENIALGLSGGQQQRVALARALAMDPDV--LLLDEPTSALDPITRREVRALL  143 (178)
T ss_pred             EecC-----------CccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence            1111           111111122222222 78888888 899999999998  9999999999988777665543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=9.8e-18  Score=156.79  Aligned_cols=140  Identities=22%  Similarity=0.237  Sum_probs=100.8

Q ss_pred             CeEEeecceeecCCc-------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc----cCC
Q 023675           81 NILWHKNSVDKRDRQ-------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~-------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~----~~~  149 (279)
                      .++++|++|+|++..       ||++.+||.++|+|+|||||||++++|.|.+ +|++|+|.++|.++...-.    ..+
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i~~~g~~~~~l~~~~~~e~i  414 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSITLNGVEIASLDEQALRETI  414 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCeeeECCcChhhCChhhHHHHH
Confidence            689999999998654       8999999999999999999999999999999 9999999999988752110    000


Q ss_pred             -----------------------CCCcccHHHHHHHHHHHHHHHHhC--Ccc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675          150 -----------------------SFKAEDRVENIRRIGEVAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       150 -----------------------~~~~~~~~~~~~~v~~~~~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                                             .-++++..+..+.+. +..+..+.  |+.    .-+...|+++++| .++|.+++++
T Consensus       415 ~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvg-L~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da  493 (573)
T COG4987         415 SVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVG-LEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA  493 (573)
T ss_pred             hhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcC-HHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC
Confidence                                   111111111111110 12222221  221    2334578999998 9999999998


Q ss_pred             CccEEEEeCCccchhccChhhHHHH
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++  ++||||++.+++-..+.+++.
T Consensus       494 pl--~lLDEPTegLD~~TE~~vL~l  516 (573)
T COG4987         494 PL--WLLDEPTEGLDPITERQVLAL  516 (573)
T ss_pred             Ce--EEecCCcccCChhhHHHHHHH
Confidence            88  999999999999887775554

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.74  E-value=3.9e-18  Score=166.58  Aligned_cols=145  Identities=20%  Similarity=0.206  Sum_probs=104.2

Q ss_pred             CCCCeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           78 KSTNILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      ..+.|++++++|+|+.      +.||++++|+.++|+|+|||||||++++|.|++ +|.+|.|++||.++++.    ++.
T Consensus       325 ~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~-~~~~G~I~idg~dI~~i~~~~lr~  403 (567)
T COG1132         325 TIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-DPTSGEILIDGIDIRDISLDSLRK  403 (567)
T ss_pred             CCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeEEECCEehhhcCHHHHHH
Confidence            3356999999999983      239999999999999999999999999999999 89999999999988532    111


Q ss_pred             CCCCCcccH-------------------HHHHHHHHHHH---HHHHh--CCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675          148 DLSFKAEDR-------------------VENIRRIGEVA---KLFAD--AGVIC----IACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       148 ~~~~~~~~~-------------------~~~~~~v~~~~---~~~~~--~~~~~----i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      .+++.+++.                   .+.+......+   .....  .|+..    .+..+|++|+|| .+||+++++
T Consensus       404 ~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~  483 (567)
T COG1132         404 RIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN  483 (567)
T ss_pred             hccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence            222211100                   01111111111   11111  13332    344689999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      |++  ++|||+++.++....+.+.+.+
T Consensus       484 ~~I--LILDEaTSalD~~tE~~I~~~l  508 (567)
T COG1132         484 PPI--LILDEATSALDTETEALIQDAL  508 (567)
T ss_pred             CCE--EEEeccccccCHHhHHHHHHHH
Confidence            988  9999999999999877766544

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.74  E-value=2.4e-18  Score=171.55  Aligned_cols=146  Identities=20%  Similarity=0.157  Sum_probs=104.6

Q ss_pred             CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.|+++|++|+|+..       .||++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++++.    ++.
T Consensus       449 ~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~  527 (686)
T TIGR03797       449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-TPESGSVFYDGQDLAGLDVQAVRR  527 (686)
T ss_pred             CceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcCcCCHHHHHh
Confidence            3579999999999532       28999999999999999999999999999999 89999999999988531    111


Q ss_pred             CCCCCccc-------HHHH-----------HHHHHHHH---HHHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675          148 DLSFKAED-------RVEN-----------IRRIGEVA---KLFA--DAGVI----CIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       148 ~~~~~~~~-------~~~~-----------~~~v~~~~---~~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      .+++.+++       .+++           +....+.+   ....  ..|..    ..+..+|+|++|| .+||+++++|
T Consensus       528 ~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p  607 (686)
T TIGR03797       528 QLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP  607 (686)
T ss_pred             ccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            12221111       0111           11111111   1111  11221    2345689999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHHhC
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                      ++  ++||||++.++....+.+++.+..
T Consensus       608 ~i--LiLDEpTS~LD~~te~~i~~~L~~  633 (686)
T TIGR03797       608 RI--LLFDEATSALDNRTQAIVSESLER  633 (686)
T ss_pred             CE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence            98  999999999999988887766554

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.74  E-value=1e-17  Score=138.15  Aligned_cols=119  Identities=19%  Similarity=0.219  Sum_probs=90.7

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHH
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV  157 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~  157 (279)
                      ++++++++|.+     +.+|++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++..       .....  
T Consensus         2 ~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~-------~~~~~--   71 (163)
T cd03216           2 ELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVSF-------ASPRD--   71 (163)
T ss_pred             EEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCc-------CCHHH--
Confidence            45666777654     338999999999999999999999999999999 8999999999987741       11100  


Q ss_pred             HHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          158 ENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       158 ~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                       .          ...  .+.....+++++++| .++++++.+|++  +++|||+..++....+.+.+.++
T Consensus        72 -~----------~~~--~i~~~~qLS~G~~qrl~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~  126 (163)
T cd03216          72 -A----------RRA--GIAMVYQLSVGERQMVEIARALARNARL--LILDEPTAALTPAEVERLFKVIR  126 (163)
T ss_pred             -H----------Hhc--CeEEEEecCHHHHHHHHHHHHHhcCCCE--EEEECCCcCCCHHHHHHHHHHHH
Confidence             0          000  111122278888888 899999999998  99999999999888777655443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.74  E-value=2.4e-18  Score=143.25  Aligned_cols=129  Identities=19%  Similarity=0.252  Sum_probs=91.4

Q ss_pred             EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCcc
Q 023675           83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE  154 (279)
Q Consensus        83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~  154 (279)
                      ++++++++|.     +..+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...   ....++|.++
T Consensus         2 ~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q   80 (173)
T cd03230           2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL-KPDSGEIKVLGKDIKKEPEEVKRRIGYLPE   80 (173)
T ss_pred             EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccchHhhhccEEEEec
Confidence            3455555554     3448999999999999999999999999999999 88999999999877421   1111222222


Q ss_pred             cHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          155 DRVENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       155 ~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +.           .++....+..+.. +++++++| .++++++.+|++  +++|||+..++....+.+++.+.
T Consensus        81 ~~-----------~~~~~~tv~~~~~-LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~~~~l~~~l~  139 (173)
T cd03230          81 EP-----------SLYENLTVRENLK-LSGGMKQRLALAQALLHDPEL--LILDEPTSGLDPESRREFWELLR  139 (173)
T ss_pred             CC-----------ccccCCcHHHHhh-cCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence            11           1111111111111 78888888 899999999998  99999999999888777665443

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.73  E-value=4.3e-18  Score=141.71  Aligned_cols=127  Identities=21%  Similarity=0.240  Sum_probs=91.2

Q ss_pred             EEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675           83 LWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF  151 (279)
Q Consensus        83 ~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~  151 (279)
                      ++++++++|..       ..+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...    ....++|
T Consensus         2 ~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (173)
T cd03246           2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL-RPTSGRVRLDGADISQWDPNELGDHVGY   80 (173)
T ss_pred             EEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEEcccCCHHHHHhheEE
Confidence            45566666643       238999999999999999999999999999999 89999999999877421    0011112


Q ss_pred             CcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          152 KAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       152 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      .+++.           .++. ..+..+.  +|+++++| .++++++.+|++  +++|||+..++....+.+.+.++
T Consensus        81 ~~q~~-----------~~~~-~tv~~~l--LS~G~~qrv~la~al~~~p~~--lllDEPt~~LD~~~~~~l~~~l~  140 (173)
T cd03246          81 LPQDD-----------ELFS-GSIAENI--LSGGQRQRLGLARALYGNPRI--LVLDEPNSHLDVEGERALNQAIA  140 (173)
T ss_pred             ECCCC-----------cccc-CcHHHHC--cCHHHHHHHHHHHHHhcCCCE--EEEECCccccCHHHHHHHHHHHH
Confidence            11111           1111 0111111  78888888 999999999998  99999999999988777655443

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.73  E-value=5e-18  Score=169.78  Aligned_cols=142  Identities=22%  Similarity=0.235  Sum_probs=101.3

Q ss_pred             CCCeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cc
Q 023675           79 STNILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LN  146 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~  146 (279)
                      .+.|+++|++|+|+++        .||++++|+.++|+|+||||||||+++|.|++ +|.+|.|++||.++.+.    +.
T Consensus       476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~lr  554 (711)
T TIGR00958       476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-QPTGGQVLLDGVPLVQYDHHYLH  554 (711)
T ss_pred             CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHH
Confidence            3569999999999742        28999999999999999999999999999999 89999999999887421    11


Q ss_pred             cCCCCCccc-------H------------HHHHHHHHHHH---HHHHh--CCcc----hhcccCChHHHHH-HHHHHhCC
Q 023675          147 RDLSFKAED-------R------------VENIRRIGEVA---KLFAD--AGVI----CIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       147 ~~~~~~~~~-------~------------~~~~~~v~~~~---~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      ..+++.+++       .            .+.+....+.+   .....  .|+.    ..+..+|++++|| .++|++++
T Consensus       555 ~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~  634 (711)
T TIGR00958       555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR  634 (711)
T ss_pred             hhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence            111111110       0            11111111111   11111  1222    2344689999999 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHH
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      +|++  +++|||++.++....+.+++
T Consensus       635 ~p~I--LILDEpTSaLD~~te~~i~~  658 (711)
T TIGR00958       635 KPRV--LILDEATSALDAECEQLLQE  658 (711)
T ss_pred             CCCE--EEEEccccccCHHHHHHHHH
Confidence            9998  99999999999987766665

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.73  E-value=1.1e-17  Score=145.69  Aligned_cols=117  Identities=21%  Similarity=0.268  Sum_probs=92.4

Q ss_pred             ceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHH
Q 023675           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVA  167 (279)
Q Consensus        88 ~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~  167 (279)
                      .+.+.+++||++.+|++++|||.|||||||++++|.+++ .|++|.|+++|+++.       .+......+   +   +.
T Consensus        25 ~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~-~pt~G~i~f~g~~i~-------~~~~~~~~~---~---v~   90 (268)
T COG4608          25 YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-EPTSGEILFEGKDIT-------KLSKEERRE---R---VL   90 (268)
T ss_pred             ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-CCCCceEEEcCcchh-------hcchhHHHH---H---HH
Confidence            356778889999999999999999999999999999999 899999999999986       333222222   2   22


Q ss_pred             HHHHhCCc-----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675          168 KLFADAGV-----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       168 ~~~~~~~~-----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      .++..-|+     .-.....+++++|| .+||+++-+|++  +++|||++.++--.+..
T Consensus        91 elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~l--iV~DEpvSaLDvSiqaq  147 (268)
T COG4608          91 ELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKL--IVADEPVSALDVSVQAQ  147 (268)
T ss_pred             HHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcE--EEecCchhhcchhHHHH
Confidence            22333232     22455688999999 999999999999  99999999999877665

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.73  E-value=1.4e-17  Score=142.02  Aligned_cols=143  Identities=15%  Similarity=0.132  Sum_probs=98.6

Q ss_pred             CeEEeecceeecCC---------cceeccCCeEEEEEcCCCChHHHHHHHHHHcccc---CCccEEEEcCeecccc---c
Q 023675           81 NILWHKNSVDKRDR---------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHG---L  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~~---------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~---~~~G~i~ldgd~i~~~---~  145 (279)
                      .++|+|++|.|+.+         .+|++++|++++|+|+||||||||+++|+|++ .   |.+|.|+++|.++...   .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~~~~G~i~i~g~~~~~~~~~~   81 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT-EGNVSVEGDIHYNGIPYKEFAEKY   81 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC-CCCCCcceEEEECCEECccchhhh
Confidence            46899999999743         28999999999999999999999999999999 6   8899999999887421   1


Q ss_pred             ccCCCCCcccHHHHH-HHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          146 NRDLSFKAEDRVENI-RRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       146 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      ...++|.+++..... ..+.+................+++++++| .++++++.+|++  +++|||+..++....+.+++
T Consensus        82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~l--lllDEPt~~LD~~~~~~~~~  159 (202)
T cd03233          82 PGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASV--LCWDNSTRGLDSSTALEILK  159 (202)
T ss_pred             cceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCE--EEEcCCCccCCHHHHHHHHH
Confidence            122233332210000 00111100000000122334578888888 899999999998  99999999999888777655


Q ss_pred             HHh
Q 023675          224 LAR  226 (279)
Q Consensus       224 ~~~  226 (279)
                      .+.
T Consensus       160 ~l~  162 (202)
T cd03233         160 CIR  162 (202)
T ss_pred             HHH
Confidence            433

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.72  E-value=9.5e-18  Score=167.49  Aligned_cols=145  Identities=23%  Similarity=0.275  Sum_probs=103.5

Q ss_pred             CCCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.|+++|++|+|+.       +.||++++|+.++|+|+||||||||+++|+|++ +|.+|.|++||.++.+.    ++.
T Consensus       461 ~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~l~~~~~~~lr~  539 (694)
T TIGR03375       461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-QPTEGSVLLDGVDIRQIDPADLRR  539 (694)
T ss_pred             cceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHh
Confidence            357999999999963       228999999999999999999999999999999 89999999999887531    112


Q ss_pred             CCCCCcccH-------H------------HHHHHHHHHH---HHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675          148 DLSFKAEDR-------V------------ENIRRIGEVA---KLFAD--AGVI----CIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       148 ~~~~~~~~~-------~------------~~~~~v~~~~---~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      .+++.+++.       +            +.+....+.+   .....  .|+.    ..+..+|+|++|| .++|+++++
T Consensus       540 ~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~  619 (694)
T TIGR03375       540 NIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD  619 (694)
T ss_pred             ccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence            222222211       0            1111111111   11111  1221    2345689999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHHh
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      |++  ++||||++.++....+.+++.+.
T Consensus       620 p~i--liLDE~Ts~LD~~te~~i~~~l~  645 (694)
T TIGR03375       620 PPI--LLLDEPTSAMDNRSEERFKDRLK  645 (694)
T ss_pred             CCE--EEEeCCCCCCCHHHHHHHHHHHH
Confidence            998  99999999999988877665543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.72  E-value=9.9e-18  Score=139.24  Aligned_cols=127  Identities=21%  Similarity=0.254  Sum_probs=90.7

Q ss_pred             EEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675           83 LWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF  151 (279)
Q Consensus        83 ~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~  151 (279)
                      +++++++.|..       +.+|++++|++++|+|+||||||||+++|+|++ .|.+|.++++|.++...    ....+++
T Consensus         2 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (171)
T cd03228           2 EFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY-DPTSGEILIDGVDLRDLDLESLRKNIAY   80 (171)
T ss_pred             EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence            34555555543       348999999999999999999999999999999 78999999999877421    0111222


Q ss_pred             CcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          152 KAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       152 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      .+++.           .++. ..+..+.  +++++++| .++++++.+|++  +++|||+..++......+.+.+.
T Consensus        81 ~~~~~-----------~~~~-~t~~e~l--LS~G~~~rl~la~al~~~p~l--lllDEP~~gLD~~~~~~l~~~l~  140 (171)
T cd03228          81 VPQDP-----------FLFS-GTIRENI--LSGGQRQRIAIARALLRDPPI--LILDEATSALDPETEALILEALR  140 (171)
T ss_pred             EcCCc-----------hhcc-chHHHHh--hCHHHHHHHHHHHHHhcCCCE--EEEECCCcCCCHHHHHHHHHHHH
Confidence            22211           1111 1111111  78888888 899999999988  99999999999988776665443

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.72  E-value=4.8e-18  Score=141.97  Aligned_cols=129  Identities=24%  Similarity=0.218  Sum_probs=93.4

Q ss_pred             EEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCC
Q 023675           83 LWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFK  152 (279)
Q Consensus        83 ~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~  152 (279)
                      ++++++++|..+       .+|++++|++++|+|+||||||||+++|+|.+ .|.+|+|.++|.++...   ....++|.
T Consensus         2 ~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~   80 (178)
T cd03247           2 SINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLDGVPVSDLEKALSSLISVL   80 (178)
T ss_pred             EEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence            456666666542       38999999999999999999999999999999 89999999999876311   01111222


Q ss_pred             cccHHHHHHHHHHHHHHHHhCCcch-hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          153 AEDRVENIRRIGEVAKLFADAGVIC-IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       153 ~~~~~~~~~~v~~~~~~~~~~~~~~-i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +++.           .++. ..+.. +...+++++++| .++++++.+|++  +++|||++.++....+.+++.+.
T Consensus        81 ~q~~-----------~~~~-~tv~~~i~~~LS~G~~qrv~laral~~~p~~--lllDEP~~~LD~~~~~~l~~~l~  142 (178)
T cd03247          81 NQRP-----------YLFD-TTLRNNLGRRFSGGERQRLALARILLQDAPI--VLLDEPTVGLDPITERQLLSLIF  142 (178)
T ss_pred             ccCC-----------eeec-ccHHHhhcccCCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHHHHHHH
Confidence            2111           0110 01111 155688888888 899999999998  99999999999988777666554

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.72  E-value=2.9e-17  Score=144.56  Aligned_cols=138  Identities=21%  Similarity=0.235  Sum_probs=100.3

Q ss_pred             EEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe---eccc--ccccCCCCCcccH-
Q 023675           83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD---NCRH--GLNRDLSFKAEDR-  156 (279)
Q Consensus        83 ~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd---~i~~--~~~~~~~~~~~~~-  156 (279)
                      +.....+.+.++.++.++.|+.++|.||||||||||+++|+|+. .|+.|.|.++|+   |..+  .....+||.+++. 
T Consensus         9 ~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe-~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA   87 (345)
T COG1118           9 KKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE-TPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA   87 (345)
T ss_pred             hhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC-CCCCceEEECCEeccchhccchhhcceeEEEechh
Confidence            33444566666789999999999999999999999999999999 999999999999   4432  0111233333221 


Q ss_pred             ------------------------HHHHHHHHHHHHHHHhCCcch-hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675          157 ------------------------VENIRRIGEVAKLFADAGVIC-IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (279)
Q Consensus       157 ------------------------~~~~~~v~~~~~~~~~~~~~~-i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~  210 (279)
                                              .+...++.++..+.+-.++.. ....+++++++| ++||+++.+|++  ++||||+
T Consensus        88 LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v--LLLDEPf  165 (345)
T COG1118          88 LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV--LLLDEPF  165 (345)
T ss_pred             hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe--EeecCCc
Confidence                                    122334444444443333322 456789999999 999999999988  9999999


Q ss_pred             cchhccChhhHHH
Q 023675          211 QVCEARDPKGLYK  223 (279)
Q Consensus       211 ~~l~~R~~~~l~~  223 (279)
                      ..++....+.+-+
T Consensus       166 ~ALDa~vr~~lr~  178 (345)
T COG1118         166 GALDAKVRKELRR  178 (345)
T ss_pred             hhhhHHHHHHHHH
Confidence            9999988776443

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.72  E-value=7.4e-18  Score=168.60  Aligned_cols=146  Identities=21%  Similarity=0.196  Sum_probs=104.0

Q ss_pred             CCCeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675           79 STNILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD  148 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~  148 (279)
                      .+.|++++++|+|+.      +.||++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++.+.    ++..
T Consensus       471 ~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~  549 (708)
T TIGR01193       471 NGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-QARSGEILLNGFSLKDIDRHTLRQF  549 (708)
T ss_pred             CCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCCcEEEECCEEHHHcCHHHHHHh
Confidence            457999999999964      229999999999999999999999999999999 89999999999887421    1111


Q ss_pred             CCCCccc--------------------HHHHHHHHHHHH---HHHHh--CCc----chhcccCChHHHHH-HHHHHhCCC
Q 023675          149 LSFKAED--------------------RVENIRRIGEVA---KLFAD--AGV----ICIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       149 ~~~~~~~--------------------~~~~~~~v~~~~---~~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      +++.+++                    ..+.+....+.+   .....  .|+    ...+..+|+|++|| .++|+++++
T Consensus       550 i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~  629 (708)
T TIGR01193       550 INYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD  629 (708)
T ss_pred             eEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence            2221111                    001111111111   11111  122    12345689999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHHhC
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                      |++  ++||||++.++....+.+++.+..
T Consensus       630 p~i--liLDE~Ts~LD~~te~~i~~~L~~  656 (708)
T TIGR01193       630 SKV--LILDESTSNLDTITEKKIVNNLLN  656 (708)
T ss_pred             CCE--EEEeCccccCCHHHHHHHHHHHHH
Confidence            998  999999999999888777766553

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.72  E-value=7.8e-18  Score=165.09  Aligned_cols=143  Identities=20%  Similarity=0.197  Sum_probs=100.1

Q ss_pred             CCeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675           80 TNILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL  149 (279)
Q Consensus        80 ~~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~  149 (279)
                      ..|+++|++|.|.+      +.||++++|+.++|+|+||||||||+++|+|++  |.+|.|++||.++.+.    ++..+
T Consensus       348 ~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~I~i~g~~i~~~~~~~lr~~i  425 (588)
T PRK11174        348 VTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELRELDPESWRKHL  425 (588)
T ss_pred             ceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcEEEECCEecccCCHHHHHhhe
Confidence            46999999876643      238999999999999999999999999999998  5699999999887531    11111


Q ss_pred             CCCccc-------------------HHHHHHHHHHHHH---HHHh--CCcc----hhcccCChHHHHH-HHHHHhCCCCC
Q 023675          150 SFKAED-------------------RVENIRRIGEVAK---LFAD--AGVI----CIACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       150 ~~~~~~-------------------~~~~~~~v~~~~~---~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      ++.+++                   ..+.+....+.+.   ....  .|..    ..+..+|+|++|| .+||+++++|+
T Consensus       426 ~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~  505 (588)
T PRK11174        426 SWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ  505 (588)
T ss_pred             EEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            111110                   0111111111111   1111  1222    2345689999999 99999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHHh
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +  ++||||++.++....+.+.+.+.
T Consensus       506 I--liLDE~TSaLD~~te~~i~~~l~  529 (588)
T PRK11174        506 L--LLLDEPTASLDAHSEQLVMQALN  529 (588)
T ss_pred             E--EEEeCCccCCCHHHHHHHHHHHH
Confidence            8  99999999999998877665543

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.72  E-value=8.4e-18  Score=165.02  Aligned_cols=144  Identities=19%  Similarity=0.151  Sum_probs=102.4

Q ss_pred             CCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675           80 TNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL  149 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~  149 (279)
                      +.+++++++|+|+++      .+|++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++.+.    +...+
T Consensus       339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~l~~~i  417 (592)
T PRK10790        339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY-PLTEGEIRLDGRPLSSLSHSVLRQGV  417 (592)
T ss_pred             CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEhhhCCHHHHHhhe
Confidence            569999999999642      28999999999999999999999999999999 89999999999987531    11112


Q ss_pred             CCCccc-------HHH-----------HHHHHHHHH---HHHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCCCc
Q 023675          150 SFKAED-------RVE-----------NIRRIGEVA---KLFA--DAGVI----CIACLISPYRKDR-DACRSMLPEGDF  201 (279)
Q Consensus       150 ~~~~~~-------~~~-----------~~~~v~~~~---~~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~  201 (279)
                      ++.+++       .+.           .+....+.+   ....  ..|+.    ..+..+|+|++|| .++|++++++++
T Consensus       418 ~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i  497 (592)
T PRK10790        418 AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI  497 (592)
T ss_pred             EEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence            221111       111           111111100   1111  11221    2345689999999 999999999988


Q ss_pred             cEEEEeCCccchhccChhhHHHHHh
Q 023675          202 IEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       202 i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                        +++|||++.++....+.+.+.++
T Consensus       498 --lllDEpts~LD~~t~~~i~~~l~  520 (592)
T PRK10790        498 --LILDEATANIDSGTEQAIQQALA  520 (592)
T ss_pred             --EEEeCCcccCCHHHHHHHHHHHH
Confidence              99999999999988777665543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.71  E-value=1.2e-16  Score=134.21  Aligned_cols=136  Identities=22%  Similarity=0.156  Sum_probs=92.5

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC-----ccEEEEcCeecccc------
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHG------  144 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-----~G~i~ldgd~i~~~------  144 (279)
                      .++.+++.+-|.+     +.++.++++++++|+|||||||||++++|.++. +..     .|.|.++|.++...      
T Consensus         7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn-dl~~~~r~~G~v~~~g~ni~~~~~d~~~   85 (253)
T COG1117           7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN-DLIPGARVEGEVLLDGKNIYDPKVDVVE   85 (253)
T ss_pred             eeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc-ccCcCceEEEEEEECCeeccCCCCCHHH
Confidence            4566677776764     459999999999999999999999999999987 444     49999999998643      


Q ss_pred             cccCCCCCccc-------------------------HHHHHHHHHHHHHHHHh--CCcchhcccCChHHHHH-HHHHHhC
Q 023675          145 LNRDLSFKAED-------------------------RVENIRRIGEVAKLFAD--AGVICIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       145 ~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~--~~~~~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      ++..+++.++.                         ..+....-..-+.++.+  ..+......+|++++|| -+||+++
T Consensus        86 lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA  165 (253)
T COG1117          86 LRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA  165 (253)
T ss_pred             HHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence            12222222210                         00101111111222211  11222345689999999 8999999


Q ss_pred             CCCCccEEEEeCCccchhccChh
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPK  219 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~  219 (279)
                      -+|++  +++|||++.|++-...
T Consensus       166 v~PeV--lLmDEPtSALDPIsT~  186 (253)
T COG1117         166 VKPEV--LLMDEPTSALDPISTL  186 (253)
T ss_pred             cCCcE--EEecCcccccCchhHH
Confidence            99988  9999999999886543

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.71  E-value=5.4e-17  Score=141.38  Aligned_cols=140  Identities=20%  Similarity=0.186  Sum_probs=96.0

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCCC
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLS  150 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~~  150 (279)
                      +++++++.|..     +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...       ....++
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~   80 (235)
T cd03261           2 ELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL-RPDSGEVLIDGEDISGLSEAELYRLRRRMG   80 (235)
T ss_pred             eEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccChhhHHHHhcceE
Confidence            45666666643     449999999999999999999999999999999 89999999999876321       111122


Q ss_pred             CCccc--------HHHHHHH-------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          151 FKAED--------RVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       151 ~~~~~--------~~~~~~~-------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                      |.++.        ..+.+..             ...+..++...++..    ....+|+++++| .++++++.+|++  +
T Consensus        81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l--l  158 (235)
T cd03261          81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPEL--L  158 (235)
T ss_pred             EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence            22211        1111100             001122233333322    334588899998 999999999998  9


Q ss_pred             EEeCCccchhccChhhHHHHH
Q 023675          205 FMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +||||+..++......+++.+
T Consensus       159 llDEPt~~LD~~~~~~l~~~l  179 (235)
T cd03261         159 LYDEPTAGLDPIASGVIDDLI  179 (235)
T ss_pred             EecCCcccCCHHHHHHHHHHH
Confidence            999999999998877655543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.71  E-value=9.5e-17  Score=138.06  Aligned_cols=142  Identities=17%  Similarity=0.231  Sum_probs=97.9

Q ss_pred             eEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------ccc
Q 023675           82 ILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNR  147 (279)
Q Consensus        82 i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~  147 (279)
                      +++++++++|..       +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...       ...
T Consensus         2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE-KPTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEehhhcChhHHHHHHH
Confidence            456777777743       238999999999999999999999999999999 89999999999876321       111


Q ss_pred             CCCCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          148 DLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       148 ~~~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      .++|.+++        ..+.+..            ...+...+...++..    ....+|+++++| .++++++.+|++ 
T Consensus        81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l-  159 (216)
T TIGR00960        81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL-  159 (216)
T ss_pred             hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-
Confidence            12221111        1111110            011222233333322    334588899998 999999999998 


Q ss_pred             EEEEeCCccchhccChhhHHHHHh
Q 023675          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                       +++|||++.++....+.+.+.+.
T Consensus       160 -lllDEPt~~LD~~~~~~l~~~l~  182 (216)
T TIGR00960       160 -LLADEPTGNLDPELSRDIMRLFE  182 (216)
T ss_pred             -EEEeCCCCcCCHHHHHHHHHHHH
Confidence             99999999999988777655443

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=2.1e-17  Score=156.31  Aligned_cols=139  Identities=20%  Similarity=0.210  Sum_probs=97.2

Q ss_pred             eEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc----ccCCCC
Q 023675           82 ILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF  151 (279)
Q Consensus        82 i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~----~~~~~~  151 (279)
                      +..++++|.|+++.      +|++++|+.++|+|+||||||||+++|+|++ .|+.|+|.+||.++++--    +..+.+
T Consensus       321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~-~~~~G~I~vng~~l~~l~~~~~~k~i~~  399 (559)
T COG4988         321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL-APTQGEIRVNGIDLRDLSPEAWRKQISW  399 (559)
T ss_pred             eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCccccccCHHHHHhHeee
Confidence            44459999998752      8999999999999999999999999999999 899999999998875211    111111


Q ss_pred             Ccc-------cHH------------HHHHHHHH---HHHHHHh-CCcc----hhcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          152 KAE-------DRV------------ENIRRIGE---VAKLFAD-AGVI----CIACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       152 ~~~-------~~~------------~~~~~v~~---~~~~~~~-~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      ..+       ..+            +.+....+   +...... .|+.    ..+..+|+++++| ..+|+++.++++  
T Consensus       400 v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l--  477 (559)
T COG4988         400 VSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL--  477 (559)
T ss_pred             eCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE--
Confidence            111       011            11111111   1111211 1222    2345689999999 999999999888  


Q ss_pred             EEEeCCccchhccChhhHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~  223 (279)
                      +++|||++.++.+..+.+.+
T Consensus       478 ~llDEpTA~LD~etE~~i~~  497 (559)
T COG4988         478 LLLDEPTAHLDAETEQIILQ  497 (559)
T ss_pred             EEecCCccCCCHhHHHHHHH
Confidence            99999999999887665443

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.71  E-value=1.3e-17  Score=176.73  Aligned_cols=145  Identities=19%  Similarity=0.147  Sum_probs=103.5

Q ss_pred             CCCeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccC---------------------
Q 023675           79 STNILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR---------------------  129 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~---------------------  129 (279)
                      .+.|+|++++|+|+.+        .||++++|++++|||+||||||||+++|+|+| +|                     
T Consensus      1163 ~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~y-dp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265       1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFY-DLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred             CceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhC-CCccccccccccccccccccccc
Confidence            3579999999999643        28999999999999999999999999999999 66                     


Q ss_pred             ---------------------------------CccEEEEcCeecccc----cccCCCCCcccH----------------
Q 023675          130 ---------------------------------GKLTYILDGDNCRHG----LNRDLSFKAEDR----------------  156 (279)
Q Consensus       130 ---------------------------------~~G~i~ldgd~i~~~----~~~~~~~~~~~~----------------  156 (279)
                                                       .+|.|++||.++++.    ++..+++.+++.                
T Consensus      1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265       1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321 (1466)
T ss_pred             cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC
Confidence                                             699999999998531    222233222211                


Q ss_pred             ---HHHHHHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          157 ---VENIRRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       157 ---~~~~~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                         .+.+....+.+.   ...  ..|+.    ..+..+|+||+|| .+||+++++|++  ++|||+++.|+....+.+.+
T Consensus      1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~I--LLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265       1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKI--LLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccCHHHHHHHHH
Confidence               111111111111   111  11222    2345689999999 999999999998  99999999999987776665


Q ss_pred             HHh
Q 023675          224 LAR  226 (279)
Q Consensus       224 ~~~  226 (279)
                      .+.
T Consensus      1400 ~L~ 1402 (1466)
T PTZ00265       1400 TIV 1402 (1466)
T ss_pred             HHH
Confidence            443

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.71  E-value=1.5e-17  Score=161.09  Aligned_cols=144  Identities=21%  Similarity=0.219  Sum_probs=102.8

Q ss_pred             CCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675           80 TNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD  148 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~  148 (279)
                      +.|++++++|+|+++       .|+++++|+.++|+|+||||||||+++|+|++ +|.+|.|++||.++++.    ++..
T Consensus       319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~I~~~g~~i~~~~~~~lr~~  397 (529)
T TIGR02857       319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-DPTEGSIAVNGVPLADADADSWRDQ  397 (529)
T ss_pred             CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEehhhCCHHHHHhh
Confidence            469999999999752       28999999999999999999999999999999 89999999999987531    1111


Q ss_pred             CCCCccc-------HHHH------------HHHHHH---HHHHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675          149 LSFKAED-------RVEN------------IRRIGE---VAKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       149 ~~~~~~~-------~~~~------------~~~v~~---~~~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      +++.+++       .+++            +....+   +......  .|+.    ..+..+++|++|| .++|+++++|
T Consensus       398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~  477 (529)
T TIGR02857       398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA  477 (529)
T ss_pred             eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence            1111111       1111            111111   1111111  1221    2344689999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHHh
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++  +++|||++.++....+.+++.+.
T Consensus       478 ~i--lilDE~ts~lD~~~~~~i~~~l~  502 (529)
T TIGR02857       478 PL--LLLDEPTAHLDAETEALVTEALR  502 (529)
T ss_pred             CE--EEEeCcccccCHHHHHHHHHHHH
Confidence            98  99999999999998888776555

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.71  E-value=9.8e-17  Score=137.67  Aligned_cols=141  Identities=21%  Similarity=0.220  Sum_probs=96.4

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCccc
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAED  155 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~~  155 (279)
                      +++++++.|..     +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...  ....++|.+++
T Consensus         2 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~   80 (213)
T cd03259           2 ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEILIDGRDVTGVPPERRNIGMVFQD   80 (213)
T ss_pred             eeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence            45566666643     449999999999999999999999999999999 89999999999876421  11112222211


Q ss_pred             H--------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675          156 R--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (279)
Q Consensus       156 ~--------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~  210 (279)
                      .        .+.+..            ...+..++...++..    ....+|+++++| .++++++.+|++  +++|||+
T Consensus        81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~--lllDEPt  158 (213)
T cd03259          81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL--LLLDEPL  158 (213)
T ss_pred             hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence            1        111100            011122233333322    234588899998 899999999998  9999999


Q ss_pred             cchhccChhhHHHHHh
Q 023675          211 QVCEARDPKGLYKLAR  226 (279)
Q Consensus       211 ~~l~~R~~~~l~~~~~  226 (279)
                      ..++....+.+++.+.
T Consensus       159 ~~LD~~~~~~l~~~l~  174 (213)
T cd03259         159 SALDAKLREELREELK  174 (213)
T ss_pred             ccCCHHHHHHHHHHHH
Confidence            9999988777665443

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.71  E-value=1.8e-17  Score=162.23  Aligned_cols=145  Identities=19%  Similarity=0.288  Sum_probs=102.3

Q ss_pred             CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.+++++++|+|+++       .++++++|+.++|+|+||||||||+++|+|++ +|.+|.|++||.++.+.    +..
T Consensus       339 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~~~~  417 (582)
T PRK11176        339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-DIDEGEILLDGHDLRDYTLASLRN  417 (582)
T ss_pred             CCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCceEEECCEEhhhcCHHHHHh
Confidence            3469999999999642       28999999999999999999999999999999 89999999999887421    111


Q ss_pred             CCCCCccc-------HH-------------HHHHHHHHHH---HHHH--hCCcc----hhcccCChHHHHH-HHHHHhCC
Q 023675          148 DLSFKAED-------RV-------------ENIRRIGEVA---KLFA--DAGVI----CIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       148 ~~~~~~~~-------~~-------------~~~~~v~~~~---~~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      .++|.+++       .+             +.+....+.+   ....  ..|+.    ..+..+|+|++|| .++|++++
T Consensus       418 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~  497 (582)
T PRK11176        418 QVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR  497 (582)
T ss_pred             hceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence            11111111       00             1111111111   1111  11222    2334589999999 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +|++  +++|||++.++....+.+++.+.
T Consensus       498 ~~~i--lilDEptsaLD~~t~~~i~~~l~  524 (582)
T PRK11176        498 DSPI--LILDEATSALDTESERAIQAALD  524 (582)
T ss_pred             CCCE--EEEECccccCCHHHHHHHHHHHH
Confidence            9998  99999999999988877665544

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.71  E-value=6.5e-17  Score=148.31  Aligned_cols=141  Identities=18%  Similarity=0.195  Sum_probs=99.3

Q ss_pred             eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------c
Q 023675           82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L  145 (279)
Q Consensus        82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~  145 (279)
                      |++++++++|.         ++.||++++|++++|+|+||||||||+++|++++ .|++|.|+++|.++...       .
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~-~p~~G~I~i~G~~i~~~~~~~l~~~   80 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTSGSVIVDGQDLTTLSNSELTKA   80 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHHH
Confidence            56677777774         2338999999999999999999999999999999 89999999999987421       1


Q ss_pred             ccCCCCCcccH--------HHHHHH------------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCC
Q 023675          146 NRDLSFKAEDR--------VENIRR------------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       146 ~~~~~~~~~~~--------~~~~~~------------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      ...+++.+++.        .+.+..            ...+..++...++.    .....+|+++++| .++|+++.+|+
T Consensus        81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~  160 (343)
T TIGR02314        81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK  160 (343)
T ss_pred             hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence            22233322211        111110            01122223333332    2345689999999 99999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHH
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +  +++|||++.++......+++.+
T Consensus       161 i--LLlDEPts~LD~~t~~~i~~lL  183 (343)
T TIGR02314       161 V--LLCDEATSALDPATTQSILELL  183 (343)
T ss_pred             E--EEEeCCcccCCHHHHHHHHHHH
Confidence            8  9999999999999887755433

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.70  E-value=1.1e-16  Score=138.11  Aligned_cols=141  Identities=17%  Similarity=0.210  Sum_probs=94.5

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCC
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFK  152 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~  152 (279)
                      ++++++++|..     ..||++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...     ....++|.
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~   80 (222)
T cd03224           2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL-PPRSGSIRFDGRDITGLPPHERARAGIGYV   80 (222)
T ss_pred             EEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence            45555555543     448999999999999999999999999999999 89999999999876321     11112222


Q ss_pred             ccc--------HHHHHH-------------HHHHHHHHHH--hCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675          153 AED--------RVENIR-------------RIGEVAKLFA--DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (279)
Q Consensus       153 ~~~--------~~~~~~-------------~v~~~~~~~~--~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~  208 (279)
                      ++.        ..+.+.             .+......+.  .......+..+|+++++| .++++++.+|++  +++||
T Consensus        81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDE  158 (222)
T cd03224          81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL--LLLDE  158 (222)
T ss_pred             ccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE--EEECC
Confidence            111        111110             1111111111  111112344578888888 899999999998  99999


Q ss_pred             CccchhccChhhHHHHHh
Q 023675          209 PLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       209 p~~~l~~R~~~~l~~~~~  226 (279)
                      |+..++....+.+++.+.
T Consensus       159 Pt~~LD~~~~~~l~~~l~  176 (222)
T cd03224         159 PSEGLAPKIVEEIFEAIR  176 (222)
T ss_pred             CcccCCHHHHHHHHHHHH
Confidence            999999988777665443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.70  E-value=7.1e-17  Score=138.23  Aligned_cols=141  Identities=11%  Similarity=0.152  Sum_probs=95.1

Q ss_pred             EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc---
Q 023675           83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE---  154 (279)
Q Consensus        83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~---  154 (279)
                      +++++++.|.     ++.+|++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++.......++|.++   
T Consensus         2 ~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~   80 (210)
T cd03269           2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII-LPDSGEVLFDGKPLDIAARNRIGYLPEERG   80 (210)
T ss_pred             EEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCCchhHHHHccEEEeccCCc
Confidence            4556666664     3449999999999999999999999999999999 899999999998763211111111111   


Q ss_pred             -----cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675          155 -----DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (279)
Q Consensus       155 -----~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~  212 (279)
                           ...+.+..            ...+...+...++..    ....+|+++++| .++++++.+|++  +++|||+..
T Consensus        81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~--lllDEP~~~  158 (210)
T cd03269          81 LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL--LILDEPFSG  158 (210)
T ss_pred             CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcC
Confidence                 11111110            011122223333322    234588899888 899999999998  999999999


Q ss_pred             hhccChhhHHHHHh
Q 023675          213 CEARDPKGLYKLAR  226 (279)
Q Consensus       213 l~~R~~~~l~~~~~  226 (279)
                      ++....+.+++.+.
T Consensus       159 LD~~~~~~~~~~l~  172 (210)
T cd03269         159 LDPVNVELLKDVIR  172 (210)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99887776555443

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.70  E-value=8.7e-17  Score=138.43  Aligned_cols=141  Identities=22%  Similarity=0.221  Sum_probs=95.9

Q ss_pred             EEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------c
Q 023675           83 LWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------L  145 (279)
Q Consensus        83 ~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------~  145 (279)
                      ++++++++|..         +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...        .
T Consensus         2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD-RPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             eEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc-CCCceeEEECCEehhhcchhHHHHHH
Confidence            45566666643         238999999999999999999999999999999 89999999999876321        0


Q ss_pred             ccCCCCCcc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675          146 NRDLSFKAE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       146 ~~~~~~~~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      ...++|.++        ...+.+..            ...+...+...++..    .+..+|+++++| .++++++.+|+
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  160 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK  160 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence            111221111        11111110            011222233333322    234578899988 99999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHHh
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +  ++||||++.++......+++.+.
T Consensus       161 l--llLDEP~~~LD~~~~~~l~~~l~  184 (218)
T cd03255         161 I--ILADEPTGNLDSETGKEVMELLR  184 (218)
T ss_pred             E--EEEcCCcccCCHHHHHHHHHHHH
Confidence            8  99999999999988776655433

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=8.3e-17  Score=148.17  Aligned_cols=142  Identities=17%  Similarity=0.205  Sum_probs=99.2

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~  153 (279)
                      .+++++++++|.+     +.||++++|++++|+||||||||||+++|+|++ .|++|.|++||.++....  ...+++.+
T Consensus         6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~vf   84 (351)
T PRK11432          6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-KPTEGQIFIDGEDVTHRSIQQRDICMVF   84 (351)
T ss_pred             EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEe
Confidence            4677777777753     459999999999999999999999999999999 899999999998874210  01112111


Q ss_pred             cc--------HHHHHHH------------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675          154 ED--------RVENIRR------------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (279)
Q Consensus       154 ~~--------~~~~~~~------------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~  208 (279)
                      ++        ..+.+..            ...+...+...++.    .....+|+++++| +++|+++.+|++  ++|||
T Consensus        85 Q~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l--LLLDE  162 (351)
T PRK11432         85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV--LLFDE  162 (351)
T ss_pred             CCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcC
Confidence            11        1111110            01111122222322    2345688999999 999999999998  99999


Q ss_pred             CccchhccChhhHHHHH
Q 023675          209 PLQVCEARDPKGLYKLA  225 (279)
Q Consensus       209 p~~~l~~R~~~~l~~~~  225 (279)
                      |+..++......+.+.+
T Consensus       163 P~s~LD~~~r~~l~~~l  179 (351)
T PRK11432        163 PLSNLDANLRRSMREKI  179 (351)
T ss_pred             CcccCCHHHHHHHHHHH
Confidence            99999999887755443

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.70  E-value=2e-16  Score=135.72  Aligned_cols=142  Identities=22%  Similarity=0.268  Sum_probs=97.6

Q ss_pred             eEEeecceeec------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccC
Q 023675           82 ILWHKNSVDKR------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRD  148 (279)
Q Consensus        82 i~~~~~~~~~~------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~  148 (279)
                      ++++++++.|.      .+.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...       ....
T Consensus         2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (214)
T TIGR02673         2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL-TPSRGQVRIAGEDVNRLRGRQLPLLRRR   80 (214)
T ss_pred             EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcccCCHHHHHHHHhh
Confidence            45666766663      2348999999999999999999999999999999 89999999999876421       1112


Q ss_pred             CCCCcccH--------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          149 LSFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       149 ~~~~~~~~--------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      ++|.+++.        .+.+..            ...+..++...++..    ....+|+++++| .++++++.+|++  
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--  158 (214)
T TIGR02673        81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL--  158 (214)
T ss_pred             eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE--
Confidence            22222211        111110            011122222333322    234588899888 999999999998  


Q ss_pred             EEEeCCccchhccChhhHHHHHh
Q 023675          204 VFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++||||+..++......+++.+.
T Consensus       159 llLDEPt~~LD~~~~~~l~~~l~  181 (214)
T TIGR02673       159 LLADEPTGNLDPDLSERILDLLK  181 (214)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHH
Confidence            99999999999988777665443

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=1.1e-16  Score=147.55  Aligned_cols=141  Identities=18%  Similarity=0.107  Sum_probs=98.7

Q ss_pred             eEEeecceee-cC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCc
Q 023675           82 ILWHKNSVDK-RD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA  153 (279)
Q Consensus        82 i~~~~~~~~~-~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~  153 (279)
                      ++++++++.| ..     +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++....  ...++|.+
T Consensus         4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~v~   82 (356)
T PRK11650          4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE-RITSGEIWIGGRVVNELEPADRDIAMVF   82 (356)
T ss_pred             EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEe
Confidence            5677777777 32     459999999999999999999999999999999 899999999998874210  11122222


Q ss_pred             cc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675          154 ED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (279)
Q Consensus       154 ~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~  208 (279)
                      ++        ..+.+..            ...+..++...++..    ....+|+++++| .++|+++.+|++  ++|||
T Consensus        83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~l--lLLDE  160 (356)
T PRK11650         83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAV--FLFDE  160 (356)
T ss_pred             CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence            11        1111110            011122222333322    344689999999 999999999998  99999


Q ss_pred             CccchhccChhhHHHHH
Q 023675          209 PLQVCEARDPKGLYKLA  225 (279)
Q Consensus       209 p~~~l~~R~~~~l~~~~  225 (279)
                      |++.++......+.+.+
T Consensus       161 P~s~LD~~~r~~l~~~l  177 (356)
T PRK11650        161 PLSNLDAKLRVQMRLEI  177 (356)
T ss_pred             CcccCCHHHHHHHHHHH
Confidence            99999998877655433

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.70  E-value=9.9e-17  Score=147.82  Aligned_cols=141  Identities=21%  Similarity=0.201  Sum_probs=98.8

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCcc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE  154 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~~  154 (279)
                      +++++++++|.+     +.+|++.+|++++|+||||||||||+++|+|++ .|++|.|.+||.++....  ...++|.++
T Consensus         5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q   83 (353)
T TIGR03265         5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE-RQTAGTIYQGGRDITRLPPQKRDYGIVFQ   83 (353)
T ss_pred             EEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence            667777777754     448999999999999999999999999999999 899999999998874210  111222221


Q ss_pred             c--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675          155 D--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (279)
Q Consensus       155 ~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p  209 (279)
                      +        ..+++..            ...+..++...++..    ....+|+++++| .++|+++.+|++  ++||||
T Consensus        84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l--lLLDEP  161 (353)
T TIGR03265        84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL--LLLDEP  161 (353)
T ss_pred             CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence            1        1111110            011222222233322    344688999999 999999999998  999999


Q ss_pred             ccchhccChhhHHHHH
Q 023675          210 LQVCEARDPKGLYKLA  225 (279)
Q Consensus       210 ~~~l~~R~~~~l~~~~  225 (279)
                      +..++......+.+.+
T Consensus       162 ~s~LD~~~r~~l~~~L  177 (353)
T TIGR03265       162 LSALDARVREHLRTEI  177 (353)
T ss_pred             cccCCHHHHHHHHHHH
Confidence            9999988877655433

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.70  E-value=6.7e-17  Score=158.08  Aligned_cols=145  Identities=21%  Similarity=0.264  Sum_probs=102.7

Q ss_pred             CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.+++++++|+|+++       .||++++|++++|+|+||||||||+++|+|++ +|.+|.|++||.++++.    ++.
T Consensus       336 ~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~p~~G~I~i~g~~i~~~~~~~~r~  414 (574)
T PRK11160        336 QVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW-DPQQGEILLNGQPIADYSEAALRQ  414 (574)
T ss_pred             CCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHh
Confidence            3569999999999642       28999999999999999999999999999999 89999999999987531    111


Q ss_pred             CCCCCccc-------HHHHHH---------HHHHHHHH------HH-hCCcch----hcccCChHHHHH-HHHHHhCCCC
Q 023675          148 DLSFKAED-------RVENIR---------RIGEVAKL------FA-DAGVIC----IACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       148 ~~~~~~~~-------~~~~~~---------~v~~~~~~------~~-~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      .+++.+++       .++++.         .+.+....      .. ..|+..    .+..+|+++++| .++|+++++|
T Consensus       415 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~  494 (574)
T PRK11160        415 AISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA  494 (574)
T ss_pred             heeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            12222211       111110         11111110      00 112211    344589999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHHh
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++  +++|||++.++....+.+.+.+.
T Consensus       495 ~i--lilDE~ts~lD~~t~~~i~~~l~  519 (574)
T PRK11160        495 PL--LLLDEPTEGLDAETERQILELLA  519 (574)
T ss_pred             CE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            98  99999999999988877666544

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.70  E-value=1.2e-16  Score=137.79  Aligned_cols=140  Identities=18%  Similarity=0.187  Sum_probs=96.0

Q ss_pred             EEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc
Q 023675           83 LWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA  153 (279)
Q Consensus        83 ~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~  153 (279)
                      +++++++.|..         +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ...++|.+
T Consensus         2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~-~~~i~~v~   79 (220)
T cd03293           2 EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE-RPTSGEVLVDGEPVTGP-GPDRGYVF   79 (220)
T ss_pred             eEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECccc-cCcEEEEe
Confidence            34555555643         348999999999999999999999999999999 89999999999876321 11111111


Q ss_pred             c--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675          154 E--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (279)
Q Consensus       154 ~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~  208 (279)
                      +        ...+.+..            ...+...+...++..    ....+|+++++| .++++++.+|++  ++|||
T Consensus        80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~l--llLDE  157 (220)
T cd03293          80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV--LLLDE  157 (220)
T ss_pred             cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEECC
Confidence            1        11111110            011222233333322    234588899888 999999999998  99999


Q ss_pred             CccchhccChhhHHHHHh
Q 023675          209 PLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       209 p~~~l~~R~~~~l~~~~~  226 (279)
                      |++.++....+.+++.++
T Consensus       158 Pt~~LD~~~~~~~~~~l~  175 (220)
T cd03293         158 PFSALDALTREQLQEELL  175 (220)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999988877665443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.70  E-value=8.6e-17  Score=130.02  Aligned_cols=107  Identities=18%  Similarity=0.160  Sum_probs=86.2

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHH
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV  157 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~  157 (279)
                      +++++++.|..     ..+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|...       ++|.++   
T Consensus         2 ~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~~~~~-------i~~~~~---   70 (144)
T cd03221           2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDEGIVTWGSTVK-------IGYFEQ---   70 (144)
T ss_pred             EEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCeEE-------EEEEcc---
Confidence            34555555543     348999999999999999999999999999999 89999999998521       122221   


Q ss_pred             HHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          158 ENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       158 ~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                                              +++++++| .++++++.+|++  +++|||+..++......+.+.++
T Consensus        71 ------------------------lS~G~~~rv~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~  114 (144)
T cd03221          71 ------------------------LSGGEKMRLALAKLLLENPNL--LLLDEPTNHLDLESIEALEEALK  114 (144)
T ss_pred             ------------------------CCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence                                    67788887 899999999998  99999999999988777766555

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.70  E-value=1.3e-16  Score=137.57  Aligned_cols=141  Identities=18%  Similarity=0.198  Sum_probs=95.9

Q ss_pred             EEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCC
Q 023675           83 LWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFK  152 (279)
Q Consensus        83 ~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~  152 (279)
                      +++++++.|..       +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...   ....++|.
T Consensus         2 ~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~v   80 (220)
T cd03263           2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-RPTSGTAYINGYSIRTDRKAARQSLGYC   80 (220)
T ss_pred             EEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccchHHHhhhEEEe
Confidence            45566666643       348999999999999999999999999999999 89999999999876321   11111111


Q ss_pred             cc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675          153 AE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (279)
Q Consensus       153 ~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld  207 (279)
                      ++        ...+.+..            ...+..++...++..    ....+|+++++| .++++++.+|++  +++|
T Consensus        81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllD  158 (220)
T cd03263          81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV--LLLD  158 (220)
T ss_pred             cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE--EEEC
Confidence            11        11111100            011122233333322    234588889888 999999999998  9999


Q ss_pred             CCccchhccChhhHHHHHh
Q 023675          208 VPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       208 ~p~~~l~~R~~~~l~~~~~  226 (279)
                      ||+..++....+.+++.+.
T Consensus       159 EP~~~LD~~~~~~l~~~l~  177 (220)
T cd03263         159 EPTSGLDPASRRAIWDLIL  177 (220)
T ss_pred             CCCCCCCHHHHHHHHHHHH
Confidence            9999999988777665443

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.70  E-value=2.2e-17  Score=138.49  Aligned_cols=133  Identities=21%  Similarity=0.267  Sum_probs=94.3

Q ss_pred             eEEeecceee-cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCccc
Q 023675           82 ILWHKNSVDK-RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAED  155 (279)
Q Consensus        82 i~~~~~~~~~-~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~  155 (279)
                      +++++++++| .+..+|++++|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++...     ....++|.+++
T Consensus         5 l~~~~l~~~~~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~   83 (182)
T cd03215           5 LEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR-PPASGEITLDGKPVTRRSPRDAIRAGIAYVPED   83 (182)
T ss_pred             EEEeccEEEeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccCHHHHHhCCeEEecCC
Confidence            5667776665 34569999999999999999999999999999999 89999999999887421     11123333322


Q ss_pred             HH--HHHH--HHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          156 RV--ENIR--RIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       156 ~~--~~~~--~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ..  ..+.  .+.+....         ...+++++++| .++++++.+|++  +++|||+..++....+.+.+.+.
T Consensus        84 ~~~~~~~~~~t~~e~l~~---------~~~LS~G~~qrl~la~al~~~p~l--lllDEP~~~LD~~~~~~l~~~l~  148 (182)
T cd03215          84 RKREGLVLDLSVAENIAL---------SSLLSGGNQQKVVLARWLARDPRV--LILDEPTRGVDVGAKAEIYRLIR  148 (182)
T ss_pred             cccCcccCCCcHHHHHHH---------HhhcCHHHHHHHHHHHHHccCCCE--EEECCCCcCCCHHHHHHHHHHHH
Confidence            10  0000  01110000         00178888888 899999999998  99999999999988777655443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.69  E-value=2e-16  Score=138.33  Aligned_cols=140  Identities=19%  Similarity=0.235  Sum_probs=95.4

Q ss_pred             eEEeecceeec-C-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccC
Q 023675           82 ILWHKNSVDKR-D-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRD  148 (279)
Q Consensus        82 i~~~~~~~~~~-~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~  148 (279)
                      +++++++++|. +     +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...       ....
T Consensus         2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (243)
T TIGR02315         2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSILLEGTDITKLRGKKLRKLRRR   80 (243)
T ss_pred             eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence            45667777765 3     349999999999999999999999999999999 89999999999876321       1111


Q ss_pred             CCCCccc--------HHHHHH--------------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHh
Q 023675          149 LSFKAED--------RVENIR--------------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSM  195 (279)
Q Consensus       149 ~~~~~~~--------~~~~~~--------------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l  195 (279)
                      ++|.++.        ..+.+.                    ....+..++...++..    .+..+|+++++| .+++++
T Consensus        81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al  160 (243)
T TIGR02315        81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL  160 (243)
T ss_pred             eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence            1111110        001000                    0011122222233322    344588899988 999999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +.+|++  +++|||++.++....+.+++.
T Consensus       161 ~~~p~l--lllDEPt~~LD~~~~~~l~~~  187 (243)
T TIGR02315       161 AQQPDL--ILADEPIASLDPKTSKQVMDY  187 (243)
T ss_pred             hcCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence            999998  999999999998877665543

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.69  E-value=1.4e-16  Score=137.14  Aligned_cols=142  Identities=19%  Similarity=0.194  Sum_probs=97.0

Q ss_pred             eEEeecceeecCC---------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCC
Q 023675           82 ILWHKNSVDKRDR---------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDL  149 (279)
Q Consensus        82 i~~~~~~~~~~~~---------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~  149 (279)
                      ++++++++.|..+         .+|++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...   ....+
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i   80 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-EPDAGFATVDGFDVVKEPAEARRRL   80 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEEcccCHHHHHhhE
Confidence            4566666666543         38999999999999999999999999999999 89999999999876421   11111


Q ss_pred             CCCcc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          150 SFKAE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       150 ~~~~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                      ++.++        ...+.+..            ...+...+...++..    .+..+|+++++| .++++++.+|++  +
T Consensus        81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i--l  158 (218)
T cd03266          81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV--L  158 (218)
T ss_pred             EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE--E
Confidence            11111        11111110            011122233333322    344588889888 899999999998  9


Q ss_pred             EEeCCccchhccChhhHHHHHh
Q 023675          205 FMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++|||+..++....+.+++.+.
T Consensus       159 llDEPt~~LD~~~~~~l~~~l~  180 (218)
T cd03266         159 LLDEPTTGLDVMATRALREFIR  180 (218)
T ss_pred             EEcCCCcCCCHHHHHHHHHHHH
Confidence            9999999999988777655443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=1.6e-16  Score=142.71  Aligned_cols=141  Identities=18%  Similarity=0.170  Sum_probs=98.9

Q ss_pred             eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------c
Q 023675           82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------L  145 (279)
Q Consensus        82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------~  145 (279)
                      +++++++++|..          +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...      +
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL-KPTSGKIIIDGVDITDKKVKLSDI   81 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCccEEEECCEECCCcCccHHHH
Confidence            567777777753          238999999999999999999999999999999 89999999999887431      1


Q ss_pred             ccCCCCCcccH---------HHHHHH-----------H-HHHHHHHHhCCcc------hhcccCChHHHHH-HHHHHhCC
Q 023675          146 NRDLSFKAEDR---------VENIRR-----------I-GEVAKLFADAGVI------CIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       146 ~~~~~~~~~~~---------~~~~~~-----------v-~~~~~~~~~~~~~------~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      ...++|.+++.         .+.+..           . ..+..++...++.      .....+|+++++| .++++++.
T Consensus        82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~  161 (287)
T PRK13637         82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM  161 (287)
T ss_pred             hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence            12233322211         111110           0 1112233333442      1244588899998 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHH
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +|++  +++|||+..++......+++.+
T Consensus       162 ~P~l--lllDEPt~gLD~~~~~~l~~~l  187 (287)
T PRK13637        162 EPKI--LILDEPTAGLDPKGRDEILNKI  187 (287)
T ss_pred             CCCE--EEEECCccCCCHHHHHHHHHHH
Confidence            9998  9999999999998877655433

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.69  E-value=1.3e-16  Score=144.51  Aligned_cols=142  Identities=17%  Similarity=0.129  Sum_probs=98.7

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFK  152 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~  152 (279)
                      .+++++++++|.+     +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...   ....++|.
T Consensus         7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~-~p~~G~v~i~G~~~~~~~~~~~~~ig~v   85 (306)
T PRK13537          7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT-HPDAGSISLCGEPVPSRARHARQRVGVV   85 (306)
T ss_pred             eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEecccchHHHHhcEEEE
Confidence            4677777777754     449999999999999999999999999999999 89999999999887421   11112222


Q ss_pred             ccc--------HHHHHHH---H---------HHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675          153 AED--------RVENIRR---I---------GEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (279)
Q Consensus       153 ~~~--------~~~~~~~---v---------~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld  207 (279)
                      +++        ..+.+..   .         ..+..++...++.    ..+..+|+++++| .++++++.+|++  ++||
T Consensus        86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~l--llLD  163 (306)
T PRK13537         86 PQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV--LVLD  163 (306)
T ss_pred             eccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCE--EEEe
Confidence            211        1111110   0         0111222222221    1344688888888 899999999998  9999


Q ss_pred             CCccchhccChhhHHHHH
Q 023675          208 VPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       208 ~p~~~l~~R~~~~l~~~~  225 (279)
                      ||+..++....+.+++.+
T Consensus       164 EPt~gLD~~~~~~l~~~l  181 (306)
T PRK13537        164 EPTTGLDPQARHLMWERL  181 (306)
T ss_pred             CCCcCCCHHHHHHHHHHH
Confidence            999999998877655443

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.69  E-value=2.7e-16  Score=137.35  Aligned_cols=140  Identities=19%  Similarity=0.241  Sum_probs=95.4

Q ss_pred             EEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCC
Q 023675           83 LWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDL  149 (279)
Q Consensus        83 ~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~  149 (279)
                      ++++++++|..      +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...       ....+
T Consensus         2 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   80 (241)
T cd03256           2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-EPTSGSVLIDGTDINKLKGKALRQLRRQI   80 (241)
T ss_pred             EEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEeccccCHhHHHHHHhcc
Confidence            45566666643      348999999999999999999999999999999 89999999999876321       11112


Q ss_pred             CCCcc--------cHHHHHH--------------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhC
Q 023675          150 SFKAE--------DRVENIR--------------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSML  196 (279)
Q Consensus       150 ~~~~~--------~~~~~~~--------------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~  196 (279)
                      +|.++        ...+.+.                    ....+..++...++..    .+..+|+++++| .++++++
T Consensus        81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~  160 (241)
T cd03256          81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM  160 (241)
T ss_pred             EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence            22111        1111110                    0011122233333322    234588899998 9999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .+|++  ++||||++.++......+++.+
T Consensus       161 ~~p~l--lllDEPt~~LD~~~~~~l~~~l  187 (241)
T cd03256         161 QQPKL--ILADEPVASLDPASSRQVMDLL  187 (241)
T ss_pred             cCCCE--EEEeCccccCCHHHHHHHHHHH
Confidence            99998  9999999999998877655543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.69  E-value=1.4e-16  Score=147.80  Aligned_cols=140  Identities=21%  Similarity=0.261  Sum_probs=105.3

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcc-
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE-  154 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~-  154 (279)
                      +|...+..+.+.++.||++++|++.+|+|.||+|||||+++|.|+| .|++|+|++||+.++-.     ....+++..+ 
T Consensus         9 ~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~-~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQH   87 (501)
T COG3845           9 GITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY-QPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQH   87 (501)
T ss_pred             ccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc-cCCcceEEECCEEeccCCHHHHHHcCCcEEeec
Confidence            4666667888888999999999999999999999999999999999 99999999999988421     1112221111 


Q ss_pred             -------------------------cHHHHHHHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          155 -------------------------DRVENIRRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       155 -------------------------~~~~~~~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                                               +++...+++.++   ....|+.    ..+..++.+++|| ++++++..++++  +
T Consensus        88 F~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l---~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~i--L  162 (501)
T COG3845          88 FMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKEL---SERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARL--L  162 (501)
T ss_pred             cccccccchhhhhhhcCccccccccCHHHHHHHHHHH---HHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCE--E
Confidence                                     122222333333   3334443    3556678888888 999999999999  9


Q ss_pred             EEeCCccchhccChhhHHHHHh
Q 023675          205 FMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +||||++.|.+...+.|+..++
T Consensus       163 ILDEPTaVLTP~E~~~lf~~l~  184 (501)
T COG3845         163 ILDEPTAVLTPQEADELFEILR  184 (501)
T ss_pred             EEcCCcccCCHHHHHHHHHHHH
Confidence            9999999999998888776543

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.69  E-value=2e-16  Score=142.36  Aligned_cols=140  Identities=17%  Similarity=0.233  Sum_probs=97.3

Q ss_pred             eEEeecceeec------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCC
Q 023675           82 ILWHKNSVDKR------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFK  152 (279)
Q Consensus        82 i~~~~~~~~~~------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~  152 (279)
                      +++++++-.|.      ++.||++++|++++|+||||||||||+++|++++ .|++|.|.++|.+....   ....++|.
T Consensus         5 i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~-~p~~G~i~i~G~~~~~~~~~~~~~igy~   83 (293)
T COG1131           5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL-KPTSGEILVLGYDVVKEPAKVRRRIGYV   83 (293)
T ss_pred             eeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEEcCEeCccCHHHHHhheEEE
Confidence            34455555554      4559999999999999999999999999999999 89999999999776431   12222332


Q ss_pred             cc-----------cHHHHHHHHH---------HHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675          153 AE-----------DRVENIRRIG---------EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (279)
Q Consensus       153 ~~-----------~~~~~~~~v~---------~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld  207 (279)
                      ++           +..+++..+.         .+..++...++..    .+...|.++++| .++.+++.+|++  ++||
T Consensus        84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~l--liLD  161 (293)
T COG1131          84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPEL--LILD  161 (293)
T ss_pred             ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCE--EEEC
Confidence            22           1111111111         1222333334332    245578888888 999999999998  9999


Q ss_pred             CCccchhccChhhHHHH
Q 023675          208 VPLQVCEARDPKGLYKL  224 (279)
Q Consensus       208 ~p~~~l~~R~~~~l~~~  224 (279)
                      ||+..++......+.+.
T Consensus       162 EPt~GLDp~~~~~~~~~  178 (293)
T COG1131         162 EPTSGLDPESRREIWEL  178 (293)
T ss_pred             CCCcCCCHHHHHHHHHH
Confidence            99999999887765543

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.69  E-value=2.3e-16  Score=130.80  Aligned_cols=126  Identities=19%  Similarity=0.243  Sum_probs=87.2

Q ss_pred             ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc-cccccCCCCCcccHHHHH---------
Q 023675           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR-HGLNRDLSFKAEDRVENI---------  160 (279)
Q Consensus        91 ~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~-~~~~~~~~~~~~~~~~~~---------  160 (279)
                      ...+.|+.+.+|+++++.||||||||||+|+++|+. .|..|+|.+|+..+. .+-...+-|..+.+..|+         
T Consensus        20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~-~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafg   98 (259)
T COG4525          20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV-TPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFG   98 (259)
T ss_pred             hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc-CcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHH
Confidence            334569999999999999999999999999999999 999999999999873 111111112222111111         


Q ss_pred             ------------HHHHHHHHHH--HhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675          161 ------------RRIGEVAKLF--ADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       161 ------------~~v~~~~~~~--~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                                  ....+...+.  .+.. ...+..+|++++|| -++|+++.+|++  ++||||+..++.-....
T Consensus        99 L~l~Gi~k~~R~~~a~q~l~~VgL~~~~-~~~i~qLSGGmrQRvGiARALa~eP~~--LlLDEPfgAlDa~tRe~  170 (259)
T COG4525          99 LQLRGIEKAQRREIAHQMLALVGLEGAE-HKYIWQLSGGMRQRVGIARALAVEPQL--LLLDEPFGALDALTREQ  170 (259)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhCccccc-ccceEeecchHHHHHHHHHHhhcCcce--EeecCchhhHHHHHHHH
Confidence                        1111221111  1111 23456788899999 899999999999  99999999887655443

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.69  E-value=1.8e-16  Score=135.95  Aligned_cols=141  Identities=17%  Similarity=0.205  Sum_probs=95.8

Q ss_pred             EEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCC
Q 023675           83 LWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDL  149 (279)
Q Consensus        83 ~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~  149 (279)
                      +++++++.|..      +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...       ....+
T Consensus         2 ~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~i   80 (214)
T cd03292           2 EFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE-LPTSGTIRVNGQDVSDLRGRAIPYLRRKI   80 (214)
T ss_pred             EEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence            34556666642      348999999999999999999999999999999 89999999999876321       11112


Q ss_pred             CCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          150 SFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       150 ~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                      +|.+++        ..+.+..            ...+...+...++..    ....+|+++++| .++++++.+|++  +
T Consensus        81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--l  158 (214)
T cd03292          81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI--L  158 (214)
T ss_pred             EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE--E
Confidence            221111        1111110            011122233333322    234588889888 999999999998  9


Q ss_pred             EEeCCccchhccChhhHHHHHh
Q 023675          205 FMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++|||++.++....+.+++.+.
T Consensus       159 llDEPt~~LD~~~~~~~~~~l~  180 (214)
T cd03292         159 IADEPTGNLDPDTTWEIMNLLK  180 (214)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHH
Confidence            9999999999988777655443

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.69  E-value=1e-16  Score=129.96  Aligned_cols=118  Identities=21%  Similarity=0.251  Sum_probs=89.9

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHH--
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLF--  170 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  170 (279)
                      +..||.+++|+.++|+||||||||||+++++.+. .|++|.+++.|.++.       .+.++..+..+.++.|...+|  
T Consensus        20 ~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li-sp~~G~l~f~Ge~vs-------~~~pea~Rq~VsY~~Q~paLfg~   91 (223)
T COG4619          20 NNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDVS-------TLKPEAYRQQVSYCAQTPALFGD   91 (223)
T ss_pred             cceeeeecCCceEEEeCCCCccHHHHHHHHHhcc-CCCCceEEEcCcccc-------ccChHHHHHHHHHHHcCcccccc
Confidence            4559999999999999999999999999999999 899999999999986       344444433333333222222  


Q ss_pred             --------------------------HhCCc-----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675          171 --------------------------ADAGV-----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       171 --------------------------~~~~~-----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~  218 (279)
                                                ...++     ...+..+++++++| +++|.+...|++  ++|||+++.+++...
T Consensus        92 tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~I--LLLDE~TsALD~~nk  169 (223)
T COG4619          92 TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKI--LLLDEITSALDESNK  169 (223)
T ss_pred             chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCce--EEecCchhhcChhhH
Confidence                                      11111     12455688999999 889999999888  999999999998876


Q ss_pred             hh
Q 023675          219 KG  220 (279)
Q Consensus       219 ~~  220 (279)
                      +.
T Consensus       170 r~  171 (223)
T COG4619         170 RN  171 (223)
T ss_pred             HH
Confidence            55

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.69  E-value=1.9e-16  Score=135.21  Aligned_cols=130  Identities=20%  Similarity=0.268  Sum_probs=90.4

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCCCCCccc---------HHHHHHHH
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKAED---------RVENIRRI  163 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~~~~~~~---------~~~~~~~v  163 (279)
                      +.+|++++|++++|+|+||||||||+++|+|++ .|++|.|.++|.++... ....++|.+++         ..+.+...
T Consensus        18 ~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~   96 (205)
T cd03226          18 DLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-KESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG   96 (205)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhh
Confidence            448999999999999999999999999999999 89999999999876311 11112222221         11111100


Q ss_pred             --------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          164 --------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       164 --------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                              ..+...+...++..    ....+|+++++| .++++++.+|++  ++||||+..++....+.+.+.++
T Consensus        97 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~LD~~~~~~l~~~l~  170 (205)
T cd03226          97 LKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL--LIFDEPTSGLDYKNMERVGELIR  170 (205)
T ss_pred             hhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence                    11222233333322    334578899998 899999999998  99999999999988776655443

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.69  E-value=1.7e-16  Score=140.14  Aligned_cols=120  Identities=23%  Similarity=0.293  Sum_probs=89.2

Q ss_pred             ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHH
Q 023675           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLF  170 (279)
Q Consensus        91 ~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  170 (279)
                      -..+.||+++.|++.+|+|.||||||||.++|.++. .|++|.|+++|+++.       .++..++++.++.  .++..|
T Consensus        43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi-ept~G~ilv~g~di~-------~~~~~~Lr~~Rr~--~~sMVF  112 (386)
T COG4175          43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-EPTRGEILVDGKDIA-------KLSAAELRELRRK--KISMVF  112 (386)
T ss_pred             eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC-CCCCceEEECCcchh-------cCCHHHHHHHHhh--hhhhhh
Confidence            345679999999999999999999999999999999 999999999999984       2222222222111  111111


Q ss_pred             HhC-------------------------------------Ccc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675          171 ADA-------------------------------------GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (279)
Q Consensus       171 ~~~-------------------------------------~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~  208 (279)
                      +.+                                     |+.    .....+|++.+|| -+||+++.+|++  +++||
T Consensus       113 Q~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~I--lLMDE  190 (386)
T COG4175         113 QSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDI--LLMDE  190 (386)
T ss_pred             hhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCE--EEecC
Confidence            111                                     111    1445688889999 899999999998  99999


Q ss_pred             CccchhccChhhHH
Q 023675          209 PLQVCEARDPKGLY  222 (279)
Q Consensus       209 p~~~l~~R~~~~l~  222 (279)
                      +++.|++-....+.
T Consensus       191 aFSALDPLIR~~mQ  204 (386)
T COG4175         191 AFSALDPLIRTEMQ  204 (386)
T ss_pred             chhhcChHHHHHHH
Confidence            99999998776544

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.69  E-value=2e-16  Score=138.42  Aligned_cols=140  Identities=20%  Similarity=0.247  Sum_probs=95.3

Q ss_pred             EEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675           83 LWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK  152 (279)
Q Consensus        83 ~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~  152 (279)
                      ++++++++|..      ..||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...    ....++|.
T Consensus         2 ~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (242)
T cd03295           2 EFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-EPTSGEIFIDGEDIREQDPVELRRKIGYV   80 (242)
T ss_pred             EEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCeEcCcCChHHhhcceEEE
Confidence            34566666643      348999999999999999999999999999999 89999999999876421    11112221


Q ss_pred             cc--------cHHHHHHH------------HHHHHHHHHhCCcc------hhcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675          153 AE--------DRVENIRR------------IGEVAKLFADAGVI------CIACLISPYRKDR-DACRSMLPEGDFIEVF  205 (279)
Q Consensus       153 ~~--------~~~~~~~~------------v~~~~~~~~~~~~~------~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~  205 (279)
                      ++        ...+.+..            ...+..++...++.      ..+..+|+++++| .++++++.+|++  ++
T Consensus        81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--ll  158 (242)
T cd03295          81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPL--LL  158 (242)
T ss_pred             ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence            11        11111110            01122223333332      1234578889888 999999999998  99


Q ss_pred             EeCCccchhccChhhHHHHH
Q 023675          206 MDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +|||++.++......+.+.+
T Consensus       159 lDEPt~~LD~~~~~~l~~~L  178 (242)
T cd03295         159 MDEPFGALDPITRDQLQEEF  178 (242)
T ss_pred             ecCCcccCCHHHHHHHHHHH
Confidence            99999999988777655433

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.69  E-value=9.2e-17  Score=156.55  Aligned_cols=141  Identities=16%  Similarity=0.156  Sum_probs=101.0

Q ss_pred             CCeEEeecceeecCC----------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675           80 TNILWHKNSVDKRDR----------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L  145 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~----------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~  145 (279)
                      +.++++|++|+|++.          .||++++|++++|+|+||||||||+++|+|++ +|++|.|.+||.++++.    +
T Consensus       336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~-~p~~G~i~~~g~~i~~~~~~~~  414 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY-IPQEGEILLDGAAVSADSRDDY  414 (555)
T ss_pred             ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHH
Confidence            569999999999642          38999999999999999999999999999999 89999999999988531    1


Q ss_pred             ccCCCCCcccHH-------HHH---HHHHHHHHHHHhCCcch----------hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          146 NRDLSFKAEDRV-------ENI---RRIGEVAKLFADAGVIC----------IACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       146 ~~~~~~~~~~~~-------~~~---~~v~~~~~~~~~~~~~~----------i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                      ...+++.+++..       ...   ....++...+...++..          ....+|+|+++| .++|+++.+|++  +
T Consensus       415 ~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~i--l  492 (555)
T TIGR01194       415 RDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPI--L  492 (555)
T ss_pred             HhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCE--E
Confidence            112222222110       000   00011111122222211          124588999999 999999999998  9


Q ss_pred             EEeCCccchhccChhhHHH
Q 023675          205 FMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~  223 (279)
                      ++|||++.++....+.+++
T Consensus       493 ilDE~ts~LD~~~~~~i~~  511 (555)
T TIGR01194       493 LFDEWAADQDPAFKRFFYE  511 (555)
T ss_pred             EEeCCccCCCHHHHHHHHH
Confidence            9999999999998877654

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.69  E-value=4e-17  Score=160.12  Aligned_cols=143  Identities=16%  Similarity=0.223  Sum_probs=102.5

Q ss_pred             CCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675           80 TNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL  149 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~  149 (279)
                      +.|++++++|+|+++.      ++++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++.+.    ++..+
T Consensus       333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i  411 (588)
T PRK13657        333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-DPQSGRILIDGTDIRTVTRASLRRNI  411 (588)
T ss_pred             CeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEhhhCCHHHHHhhe
Confidence            4699999999997422      8999999999999999999999999999999 89999999999887531    11111


Q ss_pred             CCCcc-----------------------cHHHHHHHHHHHHHHHH--hCCcch----hcccCChHHHHH-HHHHHhCCCC
Q 023675          150 SFKAE-----------------------DRVENIRRIGEVAKLFA--DAGVIC----IACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       150 ~~~~~-----------------------~~~~~~~~v~~~~~~~~--~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      +|.++                       +.....+.+ .+...+.  ..|+..    .+..+|+|++|| .++|++++++
T Consensus       412 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~-~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~  490 (588)
T PRK13657        412 AVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERA-QAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP  490 (588)
T ss_pred             EEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHh-CHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            11111                       111111110 0111111  112222    344589999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHHh
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++  +++|||++.++....+.+++.+.
T Consensus       491 ~i--liLDEpts~LD~~t~~~i~~~l~  515 (588)
T PRK13657        491 PI--LILDEATSALDVETEAKVKAALD  515 (588)
T ss_pred             CE--EEEeCCccCCCHHHHHHHHHHHH
Confidence            98  99999999999988887776544

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.69  E-value=1.9e-16  Score=136.64  Aligned_cols=140  Identities=16%  Similarity=0.205  Sum_probs=94.6

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCcc
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE  154 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~  154 (279)
                      ++++++++|..     +.+|++.+|++++|+|+||||||||+++|+|.+ .|++|.|.++|.++...   ....++|.++
T Consensus         2 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q   80 (220)
T cd03265           2 EVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL-KPTSGRATVAGHDVVREPREVRRRIGIVFQ   80 (220)
T ss_pred             EEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecCcChHHHhhcEEEecC
Confidence            45555555543     448999999999999999999999999999999 89999999999775310   0011111111


Q ss_pred             c--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675          155 D--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (279)
Q Consensus       155 ~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p  209 (279)
                      +        ..+.+..            ...+...+...++..    ....+|+++++| .++++++.+|++  +++|||
T Consensus        81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~l--lllDEP  158 (220)
T cd03265          81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV--LFLDEP  158 (220)
T ss_pred             CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence            1        0111100            001122222333322    244588899988 899999999998  999999


Q ss_pred             ccchhccChhhHHHHH
Q 023675          210 LQVCEARDPKGLYKLA  225 (279)
Q Consensus       210 ~~~l~~R~~~~l~~~~  225 (279)
                      +..++....+.+++.+
T Consensus       159 t~~LD~~~~~~l~~~l  174 (220)
T cd03265         159 TIGLDPQTRAHVWEYI  174 (220)
T ss_pred             ccCCCHHHHHHHHHHH
Confidence            9999998877665543

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.69  E-value=2.2e-16  Score=135.33  Aligned_cols=141  Identities=21%  Similarity=0.233  Sum_probs=95.3

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------cccCCCC
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLSF  151 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------~~~~~~~  151 (279)
                      ++++++++|..     ..||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...      ....++|
T Consensus         2 ~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~   80 (213)
T cd03262           2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE-EPDSGTIIIDGLKLTDDKKNINELRQKVGM   80 (213)
T ss_pred             EEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccchhHHHHHhcceE
Confidence            45666666653     448999999999999999999999999999999 89999999999876310      1111222


Q ss_pred             Cccc--------HHHHHHH-------------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675          152 KAED--------RVENIRR-------------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVF  205 (279)
Q Consensus       152 ~~~~--------~~~~~~~-------------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~  205 (279)
                      .+++        ..+.+..             .......+...++.    .....+|+++++| .++++++.+|++  ++
T Consensus        81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--ll  158 (213)
T cd03262          81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV--ML  158 (213)
T ss_pred             EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE--EE
Confidence            1111        1111100             01112222223332    2234578888888 999999999998  99


Q ss_pred             EeCCccchhccChhhHHHHHh
Q 023675          206 MDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +|||+..++....+.+.+.+.
T Consensus       159 lDEP~~~LD~~~~~~l~~~l~  179 (213)
T cd03262         159 FDEPTSALDPELVGEVLDVMK  179 (213)
T ss_pred             EeCCccCCCHHHHHHHHHHHH
Confidence            999999999887766555433

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.69  E-value=6.1e-17  Score=137.85  Aligned_cols=133  Identities=19%  Similarity=0.102  Sum_probs=91.5

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcc-ccCCccEEEEcCeeccccc-----ccCCCC
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL-----NRDLSF  151 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l-~~~~~G~i~ldgd~i~~~~-----~~~~~~  151 (279)
                      ++++++++|..     +.||++.+|++++|+|+||||||||+++|+|.+ ..|.+|.|.++|.++...-     ...++|
T Consensus         2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   81 (200)
T cd03217           2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL   81 (200)
T ss_pred             eEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE
Confidence            45556665543     448999999999999999999999999999994 2789999999999875210     111333


Q ss_pred             CcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          152 KAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       152 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      .++..... .. ......+     ......+++++++| .++++++.+|++  +++|||+..++......+++.
T Consensus        82 v~q~~~~~-~~-~~~~~~l-----~~~~~~LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~~~~l~~~  146 (200)
T cd03217          82 AFQYPPEI-PG-VKNADFL-----RYVNEGFSGGEKKRNEILQLLLLEPDL--AILDEPDSGLDIDALRLVAEV  146 (200)
T ss_pred             eecChhhc-cC-ccHHHHH-----hhccccCCHHHHHHHHHHHHHhcCCCE--EEEeCCCccCCHHHHHHHHHH
Confidence            33321100 00 0000000     11223678888888 899999999998  999999999988766665543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.69  E-value=2.6e-16  Score=134.55  Aligned_cols=141  Identities=18%  Similarity=0.152  Sum_probs=95.6

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc-
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE-  154 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~-  154 (279)
                      ++++++++|.+     +.+|++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...  ....+++.++ 
T Consensus         2 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~   80 (208)
T cd03268           2 KTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI-KPDSGEITFDGKSYQKNIEALRRIGALIEA   80 (208)
T ss_pred             EEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCCcccchHHHHhhEEEecCC
Confidence            45666666643     348999999999999999999999999999999 89999999999876321  0111111111 


Q ss_pred             -------cHHHHHHH--------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675          155 -------DRVENIRR--------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (279)
Q Consensus       155 -------~~~~~~~~--------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~  214 (279)
                             ...+.+..        -..+..++...++..    ....+|+++++| .++++++.+|++  +++|||+..++
T Consensus        81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~LD  158 (208)
T cd03268          81 PGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL--LILDEPTNGLD  158 (208)
T ss_pred             CccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE--EEECCCcccCC
Confidence                   11111110        001122222233322    244588889888 899999999988  99999999999


Q ss_pred             ccChhhHHHHHh
Q 023675          215 ARDPKGLYKLAR  226 (279)
Q Consensus       215 ~R~~~~l~~~~~  226 (279)
                      ....+.+++.+.
T Consensus       159 ~~~~~~l~~~l~  170 (208)
T cd03268         159 PDGIKELRELIL  170 (208)
T ss_pred             HHHHHHHHHHHH
Confidence            988776655433

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.69  E-value=1.8e-16  Score=143.32  Aligned_cols=141  Identities=18%  Similarity=0.166  Sum_probs=97.3

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFK  152 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~  152 (279)
                      .+++++++++|.+     +.||++++|++++|+|+||||||||+++|+|++ .|++|.|.++|.++...   ....++|.
T Consensus         4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~v   82 (303)
T TIGR01288         4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI-SPDRGKITVLGEPVPSRARLARVAIGVV   82 (303)
T ss_pred             EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECcccHHHHhhcEEEE
Confidence            3677777777754     449999999999999999999999999999999 89999999999876321   11112221


Q ss_pred             ccc--------HHHHHHH-----------H-HHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675          153 AED--------RVENIRR-----------I-GEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (279)
Q Consensus       153 ~~~--------~~~~~~~-----------v-~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld  207 (279)
                      +++        ..+.+..           . ..+..++...++.    ..+..+|+++++| .++++++.+|++  ++||
T Consensus        83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLD  160 (303)
T TIGR01288        83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL--LILD  160 (303)
T ss_pred             eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEe
Confidence            111        1111110           0 0111222222322    1344688899998 999999999998  9999


Q ss_pred             CCccchhccChhhHHHH
Q 023675          208 VPLQVCEARDPKGLYKL  224 (279)
Q Consensus       208 ~p~~~l~~R~~~~l~~~  224 (279)
                      ||+..++....+.+++.
T Consensus       161 EPt~gLD~~~~~~l~~~  177 (303)
T TIGR01288       161 EPTTGLDPHARHLIWER  177 (303)
T ss_pred             CCCcCCCHHHHHHHHHH
Confidence            99999999887765543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.69  E-value=2.5e-16  Score=153.32  Aligned_cols=142  Identities=19%  Similarity=0.171  Sum_probs=101.0

Q ss_pred             CCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675           80 TNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL  149 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~  149 (279)
                      +.++++|++|+|+++      .||++++|+.++|+|+||||||||+++|+|++ +|.+|.|.+||.++.+.    +...+
T Consensus       321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i  399 (547)
T PRK10522        321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVTAEQPEDYRKLF  399 (547)
T ss_pred             ceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCCCCHHHHhhhe
Confidence            469999999999643      28999999999999999999999999999999 89999999999987531    12222


Q ss_pred             CCCcccHHHHHH---------HHHHHHHHHHhCCcch---------hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675          150 SFKAEDRVENIR---------RIGEVAKLFADAGVIC---------IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (279)
Q Consensus       150 ~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~---------i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~  210 (279)
                      ++.+++..-.-.         .-..+.......+...         .+..+|+++++| .++|+++++|++  +++|||+
T Consensus       400 ~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~i--lilDE~t  477 (547)
T PRK10522        400 SAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDI--LLLDEWA  477 (547)
T ss_pred             EEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEECCC
Confidence            332222110000         0001111111111111         134688999999 999999999998  9999999


Q ss_pred             cchhccChhhHHHH
Q 023675          211 QVCEARDPKGLYKL  224 (279)
Q Consensus       211 ~~l~~R~~~~l~~~  224 (279)
                      +.++....+.+.+.
T Consensus       478 s~LD~~~~~~i~~~  491 (547)
T PRK10522        478 ADQDPHFRREFYQV  491 (547)
T ss_pred             CCCCHHHHHHHHHH
Confidence            99999887765544

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.69  E-value=2.9e-16  Score=129.89  Aligned_cols=127  Identities=23%  Similarity=0.227  Sum_probs=90.5

Q ss_pred             EEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH
Q 023675           83 LWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR  156 (279)
Q Consensus        83 ~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~  156 (279)
                      ++++++++|..      ..+|++++|++++|+|+||||||||+++|+|++ .|.+|.|.+++..-       ++|.+++.
T Consensus         2 ~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~-------i~~~~q~~   73 (166)
T cd03223           2 ELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW-PWGSGRIGMPEGED-------LLFLPQRP   73 (166)
T ss_pred             EEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCCce-------EEEECCCC
Confidence            45566666632      348999999999999999999999999999999 89999999988421       12222211


Q ss_pred             HHHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          157 VENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       157 ~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      .-.-..+.+....    .   ....+++++++| .++++++.+|++  +++|||+..++....+.+.+.+.
T Consensus        74 ~~~~~tv~~nl~~----~---~~~~LS~G~~~rv~laral~~~p~~--lllDEPt~~LD~~~~~~l~~~l~  135 (166)
T cd03223          74 YLPLGTLREQLIY----P---WDDVLSGGEQQRLAFARLLLHKPKF--VFLDEATSALDEESEDRLYQLLK  135 (166)
T ss_pred             ccccccHHHHhhc----c---CCCCCCHHHHHHHHHHHHHHcCCCE--EEEECCccccCHHHHHHHHHHHH
Confidence            0000001111000    0   235678888888 999999999998  99999999999988777666554

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.7e-16  Score=145.82  Aligned_cols=141  Identities=18%  Similarity=0.202  Sum_probs=98.2

Q ss_pred             eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------c
Q 023675           82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L  145 (279)
Q Consensus        82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~  145 (279)
                      +++++++++|.         ++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...       .
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~   80 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE-RPTSGRVLVDGQDLTALSEKELRKA   80 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHH
Confidence            56677777775         2338999999999999999999999999999999 89999999999887421       1


Q ss_pred             ccCCCCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675          146 NRDLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       146 ~~~~~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      ...++|.+++        ..+.+..            ...+..++...++..    ....+|+++++| .++++++.+|+
T Consensus        81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~  160 (343)
T PRK11153         81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK  160 (343)
T ss_pred             hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            1122222211        1111110            011122233333322    344588999998 99999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHH
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +  ++||||+..++......+++.+
T Consensus       161 i--LlLDEPts~LD~~~~~~l~~~L  183 (343)
T PRK11153        161 V--LLCDEATSALDPATTRSILELL  183 (343)
T ss_pred             E--EEEeCCcccCCHHHHHHHHHHH
Confidence            8  9999999999998877655443

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.68  E-value=6.7e-17  Score=157.86  Aligned_cols=145  Identities=18%  Similarity=0.245  Sum_probs=102.9

Q ss_pred             CCCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.+++++++|+|++       +.+|++++|+.++|+|+||||||||+++|+|++ +|.+|.|++||.++.+.    +..
T Consensus       328 ~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~~~~G~I~i~g~~i~~~~~~~~~~  406 (571)
T TIGR02203       328 RGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-EPDSGQILLDGHDLADYTLASLRR  406 (571)
T ss_pred             CCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEeHHhcCHHHHHh
Confidence            356999999999964       228999999999999999999999999999999 89999999999876421    111


Q ss_pred             CCCCCccc-------HH-------------HHHHHHHHH---HHHHHh--CCc----chhcccCChHHHHH-HHHHHhCC
Q 023675          148 DLSFKAED-------RV-------------ENIRRIGEV---AKLFAD--AGV----ICIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       148 ~~~~~~~~-------~~-------------~~~~~v~~~---~~~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      .++|.+++       .+             +.+....+.   ...+..  .|+    ...+..+|+|++|| .++|++++
T Consensus       407 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~  486 (571)
T TIGR02203       407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK  486 (571)
T ss_pred             hceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence            11111111       01             111111111   111111  122    12344589999999 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++++  ++||||++.++....+.+++.+.
T Consensus       487 ~~~i--llLDEpts~LD~~~~~~i~~~L~  513 (571)
T TIGR02203       487 DAPI--LILDEATSALDNESERLVQAALE  513 (571)
T ss_pred             CCCE--EEEeCccccCCHHHHHHHHHHHH
Confidence            9998  99999999999999888766544

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=2.5e-16  Score=139.01  Aligned_cols=139  Identities=16%  Similarity=0.206  Sum_probs=95.8

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc--
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE--  154 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~--  154 (279)
                      ++++++++.|.+     +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ...++|.++  
T Consensus         2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~-~~~~~~v~q~~   79 (255)
T PRK11248          2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-PYQHGSITLDGKPVEGP-GAERGVVFQNE   79 (255)
T ss_pred             EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCC-CCcEEEEeCCC
Confidence            456677777753     349999999999999999999999999999999 89999999999876321 000111111  


Q ss_pred             ------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675          155 ------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (279)
Q Consensus       155 ------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~  211 (279)
                            ...+.+..            ...+..++...++..    ....+|+++++| .++++++.+|++  +++|||+.
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l--llLDEPt~  157 (255)
T PRK11248         80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL--LLLDEPFG  157 (255)
T ss_pred             ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCc
Confidence                  11111100            011222233333322    344588899988 899999999998  99999999


Q ss_pred             chhccChhhHHHH
Q 023675          212 VCEARDPKGLYKL  224 (279)
Q Consensus       212 ~l~~R~~~~l~~~  224 (279)
                      .++......+.+.
T Consensus       158 ~LD~~~~~~l~~~  170 (255)
T PRK11248        158 ALDAFTREQMQTL  170 (255)
T ss_pred             cCCHHHHHHHHHH
Confidence            9999887765543

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.68  E-value=3.1e-16  Score=145.42  Aligned_cols=142  Identities=17%  Similarity=0.139  Sum_probs=100.0

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~  153 (279)
                      .+++++++++|.+     +.+|++.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++....  ...++|.+
T Consensus        14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~vf   92 (375)
T PRK09452         14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-TPDSGRIMLDGQDITHVPAENRHVNTVF   92 (375)
T ss_pred             eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHCCEEEEe
Confidence            4788888888864     348999999999999999999999999999999 899999999999874210  01112111


Q ss_pred             c--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675          154 E--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (279)
Q Consensus       154 ~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~  208 (279)
                      +        ...+++..            ...+...+...++..    ....+|+++++| +++|+++.+|++  ++|||
T Consensus        93 Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~l--lLLDE  170 (375)
T PRK09452         93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV--LLLDE  170 (375)
T ss_pred             cCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence            1        11111110            011122222223322    344688999999 999999999998  99999


Q ss_pred             CccchhccChhhHHHHH
Q 023675          209 PLQVCEARDPKGLYKLA  225 (279)
Q Consensus       209 p~~~l~~R~~~~l~~~~  225 (279)
                      |+..++......+.+.+
T Consensus       171 P~s~LD~~~r~~l~~~L  187 (375)
T PRK09452        171 SLSALDYKLRKQMQNEL  187 (375)
T ss_pred             CCCcCCHHHHHHHHHHH
Confidence            99999998877755443

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.68  E-value=2.2e-16  Score=145.82  Aligned_cols=143  Identities=20%  Similarity=0.203  Sum_probs=100.4

Q ss_pred             CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCc--cEEEEcCeeccccc--ccCCC
Q 023675           80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK--LTYILDGDNCRHGL--NRDLS  150 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~--G~i~ldgd~i~~~~--~~~~~  150 (279)
                      +.+++++++.+|..     +.||++.+|++++|+||||||||||+++|+|++ .|++  |.|+++|.++....  ...++
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~~~G~i~~~g~~~~~~~~~~r~ig   82 (362)
T TIGR03258         4 GGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTGRIAIADRDLTHAPPHKRGLA   82 (362)
T ss_pred             eEEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCEEEEECCEECCCCCHHHCCEE
Confidence            35778888777754     348999999999999999999999999999999 8999  99999998874210  11122


Q ss_pred             CCccc--------HHHHHHH------------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675          151 FKAED--------RVENIRR------------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVF  205 (279)
Q Consensus       151 ~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~  205 (279)
                      +.+++        ..+.+..            ...+...+...++.    .....+|+++++| .++|+++.+|++  ++
T Consensus        83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l--lL  160 (362)
T TIGR03258        83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV--LL  160 (362)
T ss_pred             EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence            22211        1111110            01112222222332    2345689999999 999999999998  99


Q ss_pred             EeCCccchhccChhhHHHHH
Q 023675          206 MDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ||||++.++......+.+.+
T Consensus       161 LDEP~s~LD~~~r~~l~~~l  180 (362)
T TIGR03258       161 LDEPLSALDANIRANMREEI  180 (362)
T ss_pred             EcCccccCCHHHHHHHHHHH
Confidence            99999999998877765543

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.68  E-value=2.4e-16  Score=135.19  Aligned_cols=141  Identities=17%  Similarity=0.127  Sum_probs=95.6

Q ss_pred             EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCccc
Q 023675           83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAED  155 (279)
Q Consensus        83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~~  155 (279)
                      +++++++.|.     ++.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...  ....+++.++.
T Consensus         2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~   80 (213)
T cd03301           2 ELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE-EPTSGRIYIGGRDVTDLPPKDRDIAMVFQN   80 (213)
T ss_pred             EEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCCcccceEEEEecC
Confidence            4556666664     3449999999999999999999999999999999 89999999999876321  00111211111


Q ss_pred             --------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675          156 --------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (279)
Q Consensus       156 --------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~  210 (279)
                              ..+.+..            ...+...+...++..    .+..+|+++++| .++++++.+|++  +++|||+
T Consensus        81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l--lllDEPt  158 (213)
T cd03301          81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV--FLMDEPL  158 (213)
T ss_pred             hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence                    1111100            011122233333322    234588888888 899999999998  9999999


Q ss_pred             cchhccChhhHHHHHh
Q 023675          211 QVCEARDPKGLYKLAR  226 (279)
Q Consensus       211 ~~l~~R~~~~l~~~~~  226 (279)
                      ..++....+.+++.+.
T Consensus       159 ~~LD~~~~~~l~~~l~  174 (213)
T cd03301         159 SNLDAKLRVQMRAELK  174 (213)
T ss_pred             ccCCHHHHHHHHHHHH
Confidence            9999988777655443

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.68  E-value=2.1e-16  Score=144.90  Aligned_cols=142  Identities=15%  Similarity=0.095  Sum_probs=99.6

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFK  152 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~  152 (279)
                      .|++++++.+|.+     +.||++++|++++|+||||||||||+++|+|++ .|++|.|.++|.++...   ....++|.
T Consensus        41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~-~p~~G~i~i~G~~~~~~~~~~~~~ig~v  119 (340)
T PRK13536         41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT-SPDAGKITVLGVPVPARARLARARIGVV  119 (340)
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCceEEEECCEECCcchHHHhccEEEE
Confidence            4788888888864     449999999999999999999999999999999 89999999999887421   11112222


Q ss_pred             ccc--------HHHHHHH---H--------H-HHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675          153 AED--------RVENIRR---I--------G-EVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (279)
Q Consensus       153 ~~~--------~~~~~~~---v--------~-~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld  207 (279)
                      +++        ..+.+..   .        . ....++...++.    ..+..+|+++++| .++++++.+|++  ++||
T Consensus       120 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~l--LiLD  197 (340)
T PRK13536        120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL--LILD  197 (340)
T ss_pred             eCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCE--EEEE
Confidence            211        1111110   0        0 011222222322    1344578888888 999999999998  9999


Q ss_pred             CCccchhccChhhHHHHH
Q 023675          208 VPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       208 ~p~~~l~~R~~~~l~~~~  225 (279)
                      ||+..++....+.+++.+
T Consensus       198 EPt~gLD~~~r~~l~~~l  215 (340)
T PRK13536        198 EPTTGLDPHARHLIWERL  215 (340)
T ss_pred             CCCCCCCHHHHHHHHHHH
Confidence            999999998877655443

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.68  E-value=2.5e-16  Score=134.92  Aligned_cols=130  Identities=22%  Similarity=0.260  Sum_probs=90.7

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCCcccH---------HHHH
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFKAEDR---------VENI  160 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~~~~~---------~~~~  160 (279)
                      ..||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...    ....++|.+++.         .+.+
T Consensus        19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l   97 (211)
T cd03225          19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEV   97 (211)
T ss_pred             ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHH
Confidence            448999999999999999999999999999999 89999999999876421    111122222211         1111


Q ss_pred             HH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          161 RR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       161 ~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      ..            ......++...++..    ....+|+++++| .++++++.+|++  +++|||++.++....+.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lllDEPt~~LD~~~~~~~~~  175 (211)
T cd03225          98 AFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI--LLLDEPTAGLDPAGRRELLE  175 (211)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccCCHHHHHHHHH
Confidence            10            011112233333322    344588899998 999999999998  99999999999988777665


Q ss_pred             HHh
Q 023675          224 LAR  226 (279)
Q Consensus       224 ~~~  226 (279)
                      .+.
T Consensus       176 ~l~  178 (211)
T cd03225         176 LLK  178 (211)
T ss_pred             HHH
Confidence            443

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.68  E-value=3.6e-16  Score=132.53  Aligned_cols=141  Identities=12%  Similarity=0.086  Sum_probs=94.4

Q ss_pred             eEEeecceeecCC----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc---
Q 023675           82 ILWHKNSVDKRDR----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE---  154 (279)
Q Consensus        82 i~~~~~~~~~~~~----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~---  154 (279)
                      +++++++++|..+    .||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++.......+++.++   
T Consensus         2 l~~~~l~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~   80 (195)
T PRK13541          2 LSLHQLQFNIEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIM-QPSSGNIYYKNCNINNIAKPYCTYIGHNLG   80 (195)
T ss_pred             eEEEEeeEEECCcEEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCcccChhhhhhEEeccCCcC
Confidence            3455666666432    48999999999999999999999999999999 899999999998763210000111110   


Q ss_pred             -----cHHHHHHH-------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675          155 -----DRVENIRR-------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (279)
Q Consensus       155 -----~~~~~~~~-------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~  217 (279)
                           ...+.+..       ...+...+...++.    ..+..+++++++| .++++++.+|++  +++|||++.++...
T Consensus        81 ~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~--lllDEP~~~LD~~~  158 (195)
T PRK13541         81 LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL--WLLDEVETNLSKEN  158 (195)
T ss_pred             CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHH
Confidence                 11111110       01112222222221    1344578888888 899999999998  99999999999888


Q ss_pred             hhhHHHHH
Q 023675          218 PKGLYKLA  225 (279)
Q Consensus       218 ~~~l~~~~  225 (279)
                      .+.+.+.+
T Consensus       159 ~~~l~~~l  166 (195)
T PRK13541        159 RDLLNNLI  166 (195)
T ss_pred             HHHHHHHH
Confidence            76655544

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.68  E-value=5.2e-17  Score=162.15  Aligned_cols=145  Identities=18%  Similarity=0.197  Sum_probs=103.3

Q ss_pred             CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.|++++++|+|+..       .||++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++++.    ++.
T Consensus       453 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~p~~G~I~idg~~i~~~~~~~~r~  531 (694)
T TIGR01846       453 RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQHGQVLVDGVDLAIADPAWLRR  531 (694)
T ss_pred             CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEehhhCCHHHHHH
Confidence            4579999999999532       28999999999999999999999999999999 89999999999987531    111


Q ss_pred             CCCCCccc-------HH------------HHHHHHHH---HHHHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675          148 DLSFKAED-------RV------------ENIRRIGE---VAKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       148 ~~~~~~~~-------~~------------~~~~~v~~---~~~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      .+++.+++       .+            +.+....+   +......  .|+.    ..+..+|+++++| .++|+++++
T Consensus       532 ~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~  611 (694)
T TIGR01846       532 QMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN  611 (694)
T ss_pred             hCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence            12221111       01            11111111   1111111  1222    2345689999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHHh
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      |++  +++|||++.++....+.+++.+.
T Consensus       612 ~~i--lilDEpts~LD~~~~~~i~~~l~  637 (694)
T TIGR01846       612 PRI--LIFDEATSALDYESEALIMRNMR  637 (694)
T ss_pred             CCE--EEEECCCcCCCHHHHHHHHHHHH
Confidence            998  99999999999998887766544

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.68  E-value=2.1e-16  Score=146.57  Aligned_cols=140  Identities=16%  Similarity=0.118  Sum_probs=97.8

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE  154 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~  154 (279)
                      +++++++++|.+     +.||++++|++++|+|+||||||||+++|+|++ .|++|.|+++|.++...  ....++|.++
T Consensus         4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~-~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q   82 (369)
T PRK11000          4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-DITSGDLFIGEKRMNDVPPAERGVGMVFQ   82 (369)
T ss_pred             EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence            567777777754     449999999999999999999999999999999 89999999999887421  0011121111


Q ss_pred             c--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675          155 D--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (279)
Q Consensus       155 ~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p  209 (279)
                      +        ..+.+..            ...+...+...++..    ....+|+++++| .++++++.+|++  ++||||
T Consensus        83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~l--LLLDEP  160 (369)
T PRK11000         83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDEP  160 (369)
T ss_pred             CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCC
Confidence            1        1111110            011222233333322    344688999999 999999999998  999999


Q ss_pred             ccchhccChhhHHHH
Q 023675          210 LQVCEARDPKGLYKL  224 (279)
Q Consensus       210 ~~~l~~R~~~~l~~~  224 (279)
                      ++.++....+.+.+.
T Consensus       161 ts~LD~~~~~~l~~~  175 (369)
T PRK11000        161 LSNLDAALRVQMRIE  175 (369)
T ss_pred             cccCCHHHHHHHHHH
Confidence            999999887765543

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.68  E-value=2.1e-16  Score=147.62  Aligned_cols=139  Identities=19%  Similarity=0.228  Sum_probs=96.8

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK  152 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~  152 (279)
                      +++++++++|.+     +.||.+++|++++|+||||||||||+++|+|++ .|.+|.|+++|.++...    +...+++.
T Consensus         4 L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll-~p~sG~I~l~G~~i~~~~~~~~~~~ig~v   82 (402)
T PRK09536          4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL-TPTAGTVLVAGDDVEALSARAASRRVASV   82 (402)
T ss_pred             EEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence            677788888864     349999999999999999999999999999999 89999999999887421    11111111


Q ss_pred             cccH--------HHHHH----------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          153 AEDR--------VENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       153 ~~~~--------~~~~~----------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      ++..        .+.+.                ....+...+...++..    .+..+|+++++| .++++++.+|++  
T Consensus        83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i--  160 (402)
T PRK09536         83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV--  160 (402)
T ss_pred             ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--
Confidence            1100        00000                0011112222223321    344688999999 999999999998  


Q ss_pred             EEEeCCccchhccChhhHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~  223 (279)
                      ++||||+..++......+++
T Consensus       161 LLLDEPtsgLD~~~~~~l~~  180 (402)
T PRK09536        161 LLLDEPTASLDINHQVRTLE  180 (402)
T ss_pred             EEEECCcccCCHHHHHHHHH
Confidence            99999999999987766544

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.68  E-value=2.6e-16  Score=136.71  Aligned_cols=139  Identities=17%  Similarity=0.218  Sum_probs=94.8

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCC
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFK  152 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~  152 (279)
                      ++++++++|..     +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...     ....++|.
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~   80 (232)
T cd03218           2 RAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV-KPDSGKILLDGQDITKLPMHKRARLGIGYL   80 (232)
T ss_pred             eEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence            45566666643     459999999999999999999999999999999 89999999999876311     01112221


Q ss_pred             cc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675          153 AE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (279)
Q Consensus       153 ~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld  207 (279)
                      ++        ...+.+..            ...+..++...++..    ....+|+++++| .++++++.+|++  ++||
T Consensus        81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllD  158 (232)
T cd03218          81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF--LLLD  158 (232)
T ss_pred             cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEec
Confidence            11        11111110            001112222223322    234578889888 999999999998  9999


Q ss_pred             CCccchhccChhhHHHH
Q 023675          208 VPLQVCEARDPKGLYKL  224 (279)
Q Consensus       208 ~p~~~l~~R~~~~l~~~  224 (279)
                      ||+..++....+.+++.
T Consensus       159 EPt~~LD~~~~~~~~~~  175 (232)
T cd03218         159 EPFAGVDPIAVQDIQKI  175 (232)
T ss_pred             CCcccCCHHHHHHHHHH
Confidence            99999999887775553

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.68  E-value=3e-16  Score=135.53  Aligned_cols=141  Identities=18%  Similarity=0.240  Sum_probs=95.8

Q ss_pred             eEEeecceee-c-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccC
Q 023675           82 ILWHKNSVDK-R-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRD  148 (279)
Q Consensus        82 i~~~~~~~~~-~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~  148 (279)
                      +++++++++| .     +..||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...       ....
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~   80 (222)
T PRK10908          2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE-RPSAGKIWFSGHDITRLKNREVPFLRRQ   80 (222)
T ss_pred             EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCChhHHHHHHhh
Confidence            4566666666 3     2348999999999999999999999999999999 89999999999876321       1111


Q ss_pred             CCCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          149 LSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       149 ~~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      ++|.++.        ..+.+..            ...+...+...++..    ....+|+++++| .++++++.+|++  
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--  158 (222)
T PRK10908         81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV--  158 (222)
T ss_pred             eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE--
Confidence            2221111        1111110            001112223333322    344588899888 899999999998  


Q ss_pred             EEEeCCccchhccChhhHHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++|||++.++....+.+.+.+
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l  180 (222)
T PRK10908        159 LLADEPTGNLDDALSEGILRLF  180 (222)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHH
Confidence            9999999999988776655443

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.68  E-value=1.5e-16  Score=134.66  Aligned_cols=137  Identities=15%  Similarity=0.193  Sum_probs=93.5

Q ss_pred             eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCeecccccccCCCC
Q 023675           82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSF  151 (279)
Q Consensus        82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd~i~~~~~~~~~~  151 (279)
                      ++++++++.|..         ..||++++|++++|+|+||||||||+++|+|.+. .|.+|+++++|.++.......++|
T Consensus         4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~   83 (192)
T cd03232           4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGY   83 (192)
T ss_pred             EEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEE
Confidence            566777777753         2389999999999999999999999999999863 478999999998863211122233


Q ss_pred             CcccHHHHH-HHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          152 KAEDRVENI-RRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       152 ~~~~~~~~~-~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      .++...... ..+.+.......      ...+|+++++| .++++++.+|++  +++|||+..++....+.+.+.+.
T Consensus        84 ~~q~~~~~~~~tv~~~l~~~~~------~~~LSgGe~qrv~la~al~~~p~v--lllDEP~~~LD~~~~~~l~~~l~  152 (192)
T cd03232          84 VEQQDVHSPNLTVREALRFSAL------LRGLSVEQRKRLTIGVELAAKPSI--LFLDEPTSGLDSQAAYNIVRFLK  152 (192)
T ss_pred             ecccCccccCCcHHHHHHHHHH------HhcCCHHHhHHHHHHHHHhcCCcE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence            222210000 001111100000      01678888888 899999999998  99999999999888777665443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.68  E-value=5.1e-16  Score=135.04  Aligned_cols=141  Identities=21%  Similarity=0.198  Sum_probs=96.2

Q ss_pred             eEEeecceeecCC---------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------c
Q 023675           82 ILWHKNSVDKRDR---------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L  145 (279)
Q Consensus        82 i~~~~~~~~~~~~---------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~  145 (279)
                      +++++++++|..+         .||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...       .
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~   80 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE-RPTSGSVLVDGTDLTLLSGKELRKA   80 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcccCCHHHHHHH
Confidence            4556666666433         38999999999999999999999999999999 89999999999876321       0


Q ss_pred             ccCCCCCcc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675          146 NRDLSFKAE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       146 ~~~~~~~~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      ...++|.++        ...+.+..            ...+...+...++..    ....+|+++++| .++++++.+|+
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  160 (233)
T cd03258          81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK  160 (233)
T ss_pred             HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            111222111        11111110            011122233333322    234578888888 99999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHH
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +  ++||||+..++......+++.+
T Consensus       161 l--llLDEP~~~LD~~~~~~l~~~l  183 (233)
T cd03258         161 V--LLCDEATSALDPETTQSILALL  183 (233)
T ss_pred             E--EEecCCCCcCCHHHHHHHHHHH
Confidence            8  9999999999998877655543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.68  E-value=3.3e-16  Score=136.82  Aligned_cols=141  Identities=21%  Similarity=0.229  Sum_probs=96.6

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE  154 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~  154 (279)
                      ++++++++.|..     +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...  ....++|.++
T Consensus         3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~q   81 (239)
T cd03296           3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-RPDSGTILFGGEDATDVPVQERNVGFVFQ   81 (239)
T ss_pred             EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCCccccceEEEec
Confidence            566777777754     348999999999999999999999999999999 89999999999876321  0011111111


Q ss_pred             --------cHHHHHHH----------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675          155 --------DRVENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (279)
Q Consensus       155 --------~~~~~~~~----------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~  205 (279)
                              ...+.+..                ...+..++...++..    .+..+|+++++| .++++++.+|++  ++
T Consensus        82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--ll  159 (239)
T cd03296          82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV--LL  159 (239)
T ss_pred             CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence                    01111100                011112233333321    234578889888 999999999998  99


Q ss_pred             EeCCccchhccChhhHHHHH
Q 023675          206 MDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ||||+..++....+.+++.+
T Consensus       160 lDEP~~~LD~~~~~~l~~~l  179 (239)
T cd03296         160 LDEPFGALDAKVRKELRRWL  179 (239)
T ss_pred             EcCCcccCCHHHHHHHHHHH
Confidence            99999999998877755433

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=3.6e-16  Score=136.08  Aligned_cols=142  Identities=22%  Similarity=0.258  Sum_probs=98.5

Q ss_pred             CeEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675           81 NILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------  144 (279)
Q Consensus        81 ~i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------  144 (279)
                      .++++++++.|..         +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...       
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~~~~~~~~~~   83 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD-TPTSGDVIFNGQPMSKLSSAAKAE   83 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCCHHHHHH
Confidence            3677788777753         238999999999999999999999999999999 89999999999876421       


Q ss_pred             c-ccCCCCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675          145 L-NRDLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       145 ~-~~~~~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      . ...++|.+++        ..+.+..            ...+...+...++..    ....+|+++++| .++++++.+
T Consensus        84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~  163 (233)
T PRK11629         84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN  163 (233)
T ss_pred             HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            0 0112221111        1111110            011222233333322    334588899888 899999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      |++  ++||||++.++......+.+.+
T Consensus       164 p~l--llLDEPt~~LD~~~~~~l~~~l  188 (233)
T PRK11629        164 PRL--VLADEPTGNLDARNADSIFQLL  188 (233)
T ss_pred             CCE--EEEeCCCCCCCHHHHHHHHHHH
Confidence            998  9999999999998877655543

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.68  E-value=3.1e-16  Score=136.74  Aligned_cols=141  Identities=17%  Similarity=0.180  Sum_probs=96.8

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc---ccCCCCCc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA  153 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~---~~~~~~~~  153 (279)
                      +++++++++|.+     ..||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++....   ...++|.+
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~i~~~~~~~~~~i~~~~   80 (236)
T TIGR03864         2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY-VAQEGQISVAGHDLRRAPRAALARLGVVF   80 (236)
T ss_pred             EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcccCChhhhhhEEEeC
Confidence            456677777753     348999999999999999999999999999999 899999999998763210   01111111


Q ss_pred             cc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675          154 ED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (279)
Q Consensus       154 ~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~  208 (279)
                      ++        ..+.+..            ...+...+...++..    .+..+|+++++| .++++++.+|++  +++||
T Consensus        81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDE  158 (236)
T TIGR03864        81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL--LLLDE  158 (236)
T ss_pred             CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence            11        1111110            011122223333322    344588899888 899999999998  99999


Q ss_pred             CccchhccChhhHHHHH
Q 023675          209 PLQVCEARDPKGLYKLA  225 (279)
Q Consensus       209 p~~~l~~R~~~~l~~~~  225 (279)
                      |+..++....+.+++.+
T Consensus       159 P~~~LD~~~~~~l~~~l  175 (236)
T TIGR03864       159 PTVGLDPASRAAIVAHV  175 (236)
T ss_pred             CccCCCHHHHHHHHHHH
Confidence            99999998877755533

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.68  E-value=3.4e-16  Score=135.01  Aligned_cols=141  Identities=21%  Similarity=0.249  Sum_probs=96.2

Q ss_pred             eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------
Q 023675           82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------  144 (279)
Q Consensus        82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------  144 (279)
                      +++++++++|..         +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...        
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~   80 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-NPTSGEVLFNGQSLSKLSSNERAKL   80 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhhhcCHhHHHHH
Confidence            355666666642         338999999999999999999999999999999 89999999999876321        


Q ss_pred             cccCCCCCcc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCC
Q 023675          145 LNRDLSFKAE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       145 ~~~~~~~~~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      ....++|.++        ...+.+..            ...+..++...++..    ....+|+++++| .++++++.+|
T Consensus        81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  160 (221)
T TIGR02211        81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP  160 (221)
T ss_pred             HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence            0011121111        11111100            011122233333322    344688999998 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHH
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++  ++||||+..++......+.+.+
T Consensus       161 ~i--lllDEPt~~LD~~~~~~l~~~l  184 (221)
T TIGR02211       161 SL--VLADEPTGNLDNNNAKIIFDLM  184 (221)
T ss_pred             CE--EEEeCCCCcCCHHHHHHHHHHH
Confidence            98  9999999999988877665544

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.68  E-value=4.4e-16  Score=135.61  Aligned_cols=140  Identities=17%  Similarity=0.184  Sum_probs=95.0

Q ss_pred             EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCC
Q 023675           83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFK  152 (279)
Q Consensus        83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~  152 (279)
                      +++++++.|.     ++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...     ....++|.
T Consensus         2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v   80 (236)
T cd03219           2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-RPTSGSVLFDGEDITGLPPHEIARLGIGRT   80 (236)
T ss_pred             eeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence            3455555554     3459999999999999999999999999999999 89999999999876421     01112221


Q ss_pred             cc--------cHHHHHHH----------------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCC
Q 023675          153 AE--------DRVENIRR----------------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       153 ~~--------~~~~~~~~----------------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      ++        ...+.+..                      ...+...+...++..    .+..+|+++++| .++++++.
T Consensus        81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~  160 (236)
T cd03219          81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT  160 (236)
T ss_pred             ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence            11        11111100                      001122222333322    334588899888 89999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHH
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +|++  +++|||+..++......+++.+
T Consensus       161 ~p~l--lllDEPt~~LD~~~~~~l~~~l  186 (236)
T cd03219         161 DPKL--LLLDEPAAGLNPEETEELAELI  186 (236)
T ss_pred             CCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence            9998  9999999999988877665544

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.68  E-value=1.9e-16  Score=134.20  Aligned_cols=137  Identities=18%  Similarity=0.217  Sum_probs=95.5

Q ss_pred             eEEeecceeecC-----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCeecccc-cccC
Q 023675           82 ILWHKNSVDKRD-----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHG-LNRD  148 (279)
Q Consensus        82 i~~~~~~~~~~~-----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd~i~~~-~~~~  148 (279)
                      +++++++++|..           +.+|++++|++++|+|+||||||||+++|+|++. .|.+|.|.++|.++... ....
T Consensus         4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~   83 (194)
T cd03213           4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI   83 (194)
T ss_pred             EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhhe
Confidence            677788888864           2289999999999999999999999999999872 57899999999887421 1112


Q ss_pred             CCCCcccHHHHH-HHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          149 LSFKAEDRVENI-RRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       149 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +++.+++..... ..+.+.......      ...+|+++++| .++++++.+|++  +++|||+..++....+.+++.+.
T Consensus        84 i~~~~q~~~~~~~~t~~~~i~~~~~------~~~LS~G~~qrv~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~  155 (194)
T cd03213          84 IGYVPQDDILHPTLTVRETLMFAAK------LRGLSGGERKRVSIALELVSNPSL--LFLDEPTSGLDSSSALQVMSLLR  155 (194)
T ss_pred             EEEccCcccCCCCCcHHHHHHHHHH------hccCCHHHHHHHHHHHHHHcCCCE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence            233322211000 001111100000      01678888888 999999999998  99999999999988777665544

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.68  E-value=3.3e-16  Score=133.93  Aligned_cols=140  Identities=11%  Similarity=0.163  Sum_probs=101.7

Q ss_pred             eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHH----
Q 023675           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV----  157 (279)
Q Consensus        82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~----  157 (279)
                      ++..+.++.+.++.||.+++|++.+|+|+||+||||++++|.+++ .|++|.|.++|.++.......++|-++++.    
T Consensus         8 vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll-e~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k   86 (300)
T COG4152           8 VTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL-EPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPK   86 (300)
T ss_pred             chhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC-CccCceEEEcCcchhhhhhhhcccChhhhccCcc
Confidence            344445566667779999999999999999999999999999999 899999999999998888888899888762    


Q ss_pred             ----HHHHHHH------------HHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675          158 ----ENIRRIG------------EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (279)
Q Consensus       158 ----~~~~~v~------------~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R  216 (279)
                          ..+.+++            ++...+....+..    -+..+|-+.+|. ..+.+++.+|++  ++||||++.|++-
T Consensus        87 ~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL--lILDEPFSGLDPV  164 (300)
T COG4152          87 MTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL--LILDEPFSGLDPV  164 (300)
T ss_pred             CcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE--EEecCCccCCChh
Confidence                1111111            1111122222211    223345444554 888999999999  9999999999998


Q ss_pred             ChhhHHHH
Q 023675          217 DPKGLYKL  224 (279)
Q Consensus       217 ~~~~l~~~  224 (279)
                      ..+-|-+.
T Consensus       165 N~elLk~~  172 (300)
T COG4152         165 NVELLKDA  172 (300)
T ss_pred             hHHHHHHH
Confidence            76554443

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.68  E-value=2.6e-16  Score=136.41  Aligned_cols=143  Identities=19%  Similarity=0.205  Sum_probs=96.6

Q ss_pred             CeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCC
Q 023675           81 NILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLS  150 (279)
Q Consensus        81 ~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~  150 (279)
                      .+++++++++|..      +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...    +...++
T Consensus         2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (229)
T cd03254           2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY-DPQKGQILIDGIDIRDISRKSLRSMIG   80 (229)
T ss_pred             eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence            4677788777753      238999999999999999999999999999999 89999999999876321    111122


Q ss_pred             CCcccH-------HHHH---------HHHHH------HHHHHHhC--Ccc----hhcccCChHHHHH-HHHHHhCCCCCc
Q 023675          151 FKAEDR-------VENI---------RRIGE------VAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDF  201 (279)
Q Consensus       151 ~~~~~~-------~~~~---------~~v~~------~~~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~  201 (279)
                      |.++..       .+.+         ..+..      +...+...  ++.    .....+++++++| .++++++.+|++
T Consensus        81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l  160 (229)
T cd03254          81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI  160 (229)
T ss_pred             EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            222211       0000         00000      00000000  111    1235688889888 999999999998


Q ss_pred             cEEEEeCCccchhccChhhHHHHHh
Q 023675          202 IEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       202 i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                        +++|||+..++....+.+++.+.
T Consensus       161 --lllDEP~~~LD~~~~~~l~~~l~  183 (229)
T cd03254         161 --LILDEATSNIDTETEKLIQEALE  183 (229)
T ss_pred             --EEEeCccccCCHHHHHHHHHHHH
Confidence              99999999999988777665443

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.68  E-value=3e-17  Score=136.42  Aligned_cols=127  Identities=17%  Similarity=0.263  Sum_probs=93.0

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccHH--------HH
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRV--------EN  159 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~~--------~~  159 (279)
                      .+.||.+.+||+++|.||||+||||.+.++.|+. .|++|.|++|+.|+...     .+..++|-+++..        +.
T Consensus        21 ~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv-~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dN   99 (243)
T COG1137          21 NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV-RPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDN   99 (243)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE-ecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHH
Confidence            3459999999999999999999999999999999 99999999999998532     2234556555321        00


Q ss_pred             HH--------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675          160 IR--------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       160 ~~--------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      +.              +-..+-.++.++.+..    .+..+|++++.| ++||+++.+|.|  ++||||++.+++-....
T Consensus       100 i~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f--iLLDEPFAGVDPiaV~d  177 (243)
T COG1137         100 IMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF--ILLDEPFAGVDPIAVID  177 (243)
T ss_pred             HHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE--EEecCCccCCCchhHHH
Confidence            00              0011223334433332    344688888888 999999999999  99999999999876655


Q ss_pred             HH
Q 023675          221 LY  222 (279)
Q Consensus       221 l~  222 (279)
                      +.
T Consensus       178 Iq  179 (243)
T COG1137         178 IQ  179 (243)
T ss_pred             HH
Confidence            33

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.68  E-value=1.6e-16  Score=132.74  Aligned_cols=94  Identities=21%  Similarity=0.206  Sum_probs=79.0

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV  175 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  175 (279)
                      ++++++|++++|+|+||||||||+++|+|++ .|++|.|.++|..+.        +.++..                 . 
T Consensus        19 ~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~--------~~~q~~-----------------~-   71 (177)
T cd03222          19 LGVVKEGEVIGIVGPNGTGKTTAVKILAGQL-IPNGDNDEWDGITPV--------YKPQYI-----------------D-   71 (177)
T ss_pred             CcEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCcEEEECCEEEE--------EEcccC-----------------C-
Confidence            5799999999999999999999999999999 899999999997642        222110                 0 


Q ss_pred             chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          176 ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       176 ~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                            +++++++| .++++++.+|++  +++|||+..++....+.+.+.
T Consensus        72 ------LSgGq~qrv~laral~~~p~l--llLDEPts~LD~~~~~~l~~~  113 (177)
T cd03222          72 ------LSGGELQRVAIAAALLRNATF--YLFDEPSAYLDIEQRLNAARA  113 (177)
T ss_pred             ------CCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHHHHH
Confidence                  78888888 999999999988  999999999998887765543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.67  E-value=4e-16  Score=135.04  Aligned_cols=142  Identities=22%  Similarity=0.225  Sum_probs=96.4

Q ss_pred             eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------c
Q 023675           82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L  145 (279)
Q Consensus        82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~  145 (279)
                      ++++++++.|..         +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...       .
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~   80 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL-KPTSGSIIFDGKDLLKLSRRLRKIR   80 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEccccchhhHHHh
Confidence            456666666643         238999999999999999999999999999999 89999999999876421       1


Q ss_pred             ccCCCCCcccH----------HHHHH------------H-HHHH-HHHHHhCCcc-----hhcccCChHHHHH-HHHHHh
Q 023675          146 NRDLSFKAEDR----------VENIR------------R-IGEV-AKLFADAGVI-----CIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       146 ~~~~~~~~~~~----------~~~~~------------~-v~~~-~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ...++|.++..          .+.+.            . .... ...+...++.     .....+|+++++| .+++++
T Consensus        81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  160 (228)
T cd03257          81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL  160 (228)
T ss_pred             hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence            11122211110          11110            0 0111 1222333331     1234578889888 999999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +.+|++  ++||||++.++....+.+++.+.
T Consensus       161 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~  189 (228)
T cd03257         161 ALNPKL--LIADEPTSALDVSVQAQILDLLK  189 (228)
T ss_pred             hcCCCE--EEecCCCCCCCHHHHHHHHHHHH
Confidence            999998  99999999999888776655443

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.67  E-value=3.2e-16  Score=144.42  Aligned_cols=141  Identities=20%  Similarity=0.206  Sum_probs=97.6

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE  154 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~  154 (279)
                      ++++++++.|.+     +.||++.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++...  ....++|.++
T Consensus         3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q   81 (353)
T PRK10851          3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-HQTSGHIRFHGTDVSRLHARDRKVGFVFQ   81 (353)
T ss_pred             EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence            556677666654     459999999999999999999999999999999 89999999999887421  0011121111


Q ss_pred             c--------HHHHHHH----------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675          155 D--------RVENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (279)
Q Consensus       155 ~--------~~~~~~~----------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~  205 (279)
                      +        ..+++..                ...+..++...++..    ....+|+++++| .++|+++.+|++  ++
T Consensus        82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l--lL  159 (353)
T PRK10851         82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI--LL  159 (353)
T ss_pred             CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence            1        0111100                011222233333322    344588999999 999999999998  99


Q ss_pred             EeCCccchhccChhhHHHHH
Q 023675          206 MDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +|||+..++......+.+.+
T Consensus       160 LDEP~s~LD~~~r~~l~~~L  179 (353)
T PRK10851        160 LDEPFGALDAQVRKELRRWL  179 (353)
T ss_pred             EeCCCccCCHHHHHHHHHHH
Confidence            99999999998877655443

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.67  E-value=4.6e-16  Score=134.75  Aligned_cols=142  Identities=21%  Similarity=0.188  Sum_probs=96.7

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc----cCCccEEEEcCeecccc------ccc
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRHG------LNR  147 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~----~~~~G~i~ldgd~i~~~------~~~  147 (279)
                      ++++++++|..     +.||++.+|++++|+|+||||||||+++|+|++.    .|.+|.|+++|.++...      ...
T Consensus         2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (227)
T cd03260           2 ELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRR   81 (227)
T ss_pred             EEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHh
Confidence            45666666653     3489999999999999999999999999999972    57899999999876321      111


Q ss_pred             CCCCCccc-------HHHHHHH-------------HHHHHHHHHhCCcch----h--cccCChHHHHH-HHHHHhCCCCC
Q 023675          148 DLSFKAED-------RVENIRR-------------IGEVAKLFADAGVIC----I--ACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       148 ~~~~~~~~-------~~~~~~~-------------v~~~~~~~~~~~~~~----i--~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      .++|.+++       ..+.+..             ...+..++...++..    .  +..+|+++++| .++++++.+|+
T Consensus        82 ~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~  161 (227)
T cd03260          82 RVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPE  161 (227)
T ss_pred             hEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            12221111       1111100             011122233333321    1  35688999998 99999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHHh
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +  +++|||+..++....+.+++.++
T Consensus       162 l--lllDEPt~~LD~~~~~~l~~~l~  185 (227)
T cd03260         162 V--LLLDEPTSALDPISTAKIEELIA  185 (227)
T ss_pred             E--EEEeCCCccCCHHHHHHHHHHHH
Confidence            8  99999999999988777665444

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=3.3e-16  Score=136.65  Aligned_cols=142  Identities=19%  Similarity=0.225  Sum_probs=96.4

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS  150 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~  150 (279)
                      .++++++++.|..     +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...     ....++
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~   83 (237)
T PRK11614          5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP-RATSGRIVFDGKDITDWQTAKIMREAVA   83 (237)
T ss_pred             EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEecCCCCHHHHHHhCEE
Confidence            3677888887764     339999999999999999999999999999999 89999999999876321     111111


Q ss_pred             CCcc--------cHHHHH-------------HHHHHHHHHHH--hCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEE
Q 023675          151 FKAE--------DRVENI-------------RRIGEVAKLFA--DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (279)
Q Consensus       151 ~~~~--------~~~~~~-------------~~v~~~~~~~~--~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~l  206 (279)
                      |.++        ...+.+             ..+......+.  ..........+|+++++| .++++++.+|++  +++
T Consensus        84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i--lll  161 (237)
T PRK11614         84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL--LLL  161 (237)
T ss_pred             EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE--EEE
Confidence            1111        001110             11111111110  000112344578888888 899999999998  999


Q ss_pred             eCCccchhccChhhHHHHH
Q 023675          207 DVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       207 d~p~~~l~~R~~~~l~~~~  225 (279)
                      |||+..++....+.+++.+
T Consensus       162 DEPt~~LD~~~~~~l~~~l  180 (237)
T PRK11614        162 DEPSLGLAPIIIQQIFDTI  180 (237)
T ss_pred             cCccccCCHHHHHHHHHHH
Confidence            9999999998877765543

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=2.8e-16  Score=139.85  Aligned_cols=141  Identities=18%  Similarity=0.149  Sum_probs=96.9

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------cccCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLS  150 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------~~~~~~  150 (279)
                      +++++++++|.+     +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...      ....++
T Consensus         2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~i~   80 (271)
T PRK13638          2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL-RPQKGAVLWQGKPLDYSKRGLLALRQQVA   80 (271)
T ss_pred             eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCccEEEECCEEcccccCCHHHHHhheE
Confidence            456777777754     349999999999999999999999999999999 89999999999886310      111222


Q ss_pred             CCcccH---------HHHHHH-----------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          151 FKAEDR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       151 ~~~~~~---------~~~~~~-----------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                      |.+++.         ...+..           . ..+...+...++..    ....+|+++++| .++++++.+|++  +
T Consensus        81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l--l  158 (271)
T PRK13638         81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY--L  158 (271)
T ss_pred             EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE--E
Confidence            222211         111100           0 01111222223211    234578889888 899999999998  9


Q ss_pred             EEeCCccchhccChhhHHHHH
Q 023675          205 FMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +||||+..++......+++.+
T Consensus       159 lLDEPt~~LD~~~~~~l~~~l  179 (271)
T PRK13638        159 LLDEPTAGLDPAGRTQMIAII  179 (271)
T ss_pred             EEeCCcccCCHHHHHHHHHHH
Confidence            999999999998877655443

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.67  E-value=4.2e-16  Score=133.57  Aligned_cols=140  Identities=15%  Similarity=0.146  Sum_probs=95.3

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCcc
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE  154 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~  154 (279)
                      +++++++.|..     +.||++++| +++|+|+||||||||+++|+|++ .|.+|.|+++|.++...   ....+++.++
T Consensus         2 ~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q   79 (211)
T cd03264           2 QLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT-PPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ   79 (211)
T ss_pred             EEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCCccccchHHHHhheEEecC
Confidence            45666666643     458999999 99999999999999999999999 89999999999876321   0111111111


Q ss_pred             --------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675          155 --------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (279)
Q Consensus       155 --------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p  209 (279)
                              ...+.+..            ...+...+...++..    ....+|+++++| .++++++.+|++  +++|||
T Consensus        80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEP  157 (211)
T cd03264          80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI--LIVDEP  157 (211)
T ss_pred             CCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence                    11111110            011122223333322    344588889888 999999999998  999999


Q ss_pred             ccchhccChhhHHHHHh
Q 023675          210 LQVCEARDPKGLYKLAR  226 (279)
Q Consensus       210 ~~~l~~R~~~~l~~~~~  226 (279)
                      +..++....+.+++.++
T Consensus       158 t~~LD~~~~~~l~~~l~  174 (211)
T cd03264         158 TAGLDPEERIRFRNLLS  174 (211)
T ss_pred             cccCCHHHHHHHHHHHH
Confidence            99999988777665444

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=3e-16  Score=145.68  Aligned_cols=140  Identities=19%  Similarity=0.174  Sum_probs=99.4

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~  153 (279)
                      .+++++++++|.+     +.+|++.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++...  ....++|.+
T Consensus        19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~vf   97 (377)
T PRK11607         19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE-QPTAGQIMLDGVDLSHVPPYQRPINMMF   97 (377)
T ss_pred             eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHCCEEEEe
Confidence            4788888887754     459999999999999999999999999999999 89999999999987321  011122222


Q ss_pred             cc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675          154 ED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (279)
Q Consensus       154 ~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~  208 (279)
                      ++        ..+++..            ...+..++...++..    ....+|+++++| .++|+++.+|++  ++|||
T Consensus        98 Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l--LLLDE  175 (377)
T PRK11607         98 QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL--LLLDE  175 (377)
T ss_pred             CCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence            11        1111110            011122222233322    344689999999 999999999998  99999


Q ss_pred             CccchhccChhhHHH
Q 023675          209 PLQVCEARDPKGLYK  223 (279)
Q Consensus       209 p~~~l~~R~~~~l~~  223 (279)
                      |+..++......+.+
T Consensus       176 P~s~LD~~~r~~l~~  190 (377)
T PRK11607        176 PMGALDKKLRDRMQL  190 (377)
T ss_pred             CcccCCHHHHHHHHH
Confidence            999999988766543

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.67  E-value=1.8e-16  Score=136.09  Aligned_cols=131  Identities=18%  Similarity=0.228  Sum_probs=88.6

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---ccc---ccCCCC---CcccHHHHHH--
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGL---NRDLSF---KAEDRVENIR--  161 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~~~---~~~~~~---~~~~~~~~~~--  161 (279)
                      ++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++.   ..+   .....+   ......+.+.  
T Consensus        16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~   94 (213)
T cd03235          16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL-KPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMG   94 (213)
T ss_pred             ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhc
Confidence            3458999999999999999999999999999999 899999999997652   110   000000   0000001000  


Q ss_pred             --------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675          162 --------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (279)
Q Consensus       162 --------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~  222 (279)
                                    ....+...+...++..    ....+|+++++| .++++++.+|++  +++|||++.++....+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--lllDEPt~~LD~~~~~~l~  172 (213)
T cd03235          95 LYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL--LLLDEPFAGVDPKTQEDIY  172 (213)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCCHHHHHHHH
Confidence                          0011122222223321    344688899998 999999999998  9999999999998877665


Q ss_pred             HHHh
Q 023675          223 KLAR  226 (279)
Q Consensus       223 ~~~~  226 (279)
                      +.+.
T Consensus       173 ~~l~  176 (213)
T cd03235         173 ELLR  176 (213)
T ss_pred             HHHH
Confidence            5443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.67  E-value=6.2e-16  Score=131.60  Aligned_cols=142  Identities=16%  Similarity=0.171  Sum_probs=95.8

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKA  153 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~  153 (279)
                      +.+++++++|.+     +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...   ....++|.+
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~i~~~~   80 (200)
T PRK13540          2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEILFERQSIKKDLCTYQKQLCFVG   80 (200)
T ss_pred             EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeeEEECCCccccCHHHHHhheEEec
Confidence            455666666653     338999999999999999999999999999999 89999999999876421   111111111


Q ss_pred             c--------cHHHHHHHH-------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccch
Q 023675          154 E--------DRVENIRRI-------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (279)
Q Consensus       154 ~--------~~~~~~~~v-------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l  213 (279)
                      +        ...+.+...       ..+...+...++..    ....+++++++| .++++++.+|++  +++|||+..+
T Consensus        81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~--lilDEP~~~L  158 (200)
T PRK13540         81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKL--WLLDEPLVAL  158 (200)
T ss_pred             cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCccc
Confidence            1        111111100       01112222222211    233578888888 999999999998  9999999999


Q ss_pred             hccChhhHHHHHh
Q 023675          214 EARDPKGLYKLAR  226 (279)
Q Consensus       214 ~~R~~~~l~~~~~  226 (279)
                      +......+.+.++
T Consensus       159 D~~~~~~l~~~l~  171 (200)
T PRK13540        159 DELSLLTIITKIQ  171 (200)
T ss_pred             CHHHHHHHHHHHH
Confidence            9888776655443

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=5.7e-16  Score=138.18  Aligned_cols=142  Identities=16%  Similarity=0.168  Sum_probs=98.9

Q ss_pred             CeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCC
Q 023675           81 NILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLS  150 (279)
Q Consensus        81 ~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~  150 (279)
                      .+++++++++|..      +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    +...++
T Consensus         4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~   82 (274)
T PRK13647          4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-LPQRGRVKVMGREVNAENEKWVRSKVG   82 (274)
T ss_pred             eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEECCCCCHHHHHhhEE
Confidence            3677777777752      238999999999999999999999999999999 89999999999887421    111223


Q ss_pred             CCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          151 FKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       151 ~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                      |.++..         .+.+..            ...+...+...++..    ....+|+++++| .++++++.+|++  +
T Consensus        83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l--l  160 (274)
T PRK13647         83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV--I  160 (274)
T ss_pred             EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--E
Confidence            322221         111110            011122222333322    344688899888 999999999998  9


Q ss_pred             EEeCCccchhccChhhHHHHH
Q 023675          205 FMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++|||+..++......+.+.+
T Consensus       161 llDEPt~~LD~~~~~~l~~~l  181 (274)
T PRK13647        161 VLDEPMAYLDPRGQETLMEIL  181 (274)
T ss_pred             EEECCCcCCCHHHHHHHHHHH
Confidence            999999999998877655433

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.67  E-value=4.2e-16  Score=136.79  Aligned_cols=141  Identities=21%  Similarity=0.176  Sum_probs=97.3

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC-----ccEEEEcCeecccc------c
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHG------L  145 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-----~G~i~ldgd~i~~~------~  145 (279)
                      +++++++++|..     +.||++++|++++|+|+||||||||+++|+|++ .|.     +|.|+++|.++...      .
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~~~~~~G~i~~~g~~~~~~~~~~~~~   80 (247)
T TIGR00972         2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN-DLVPGVRIEGKVLFDGQDIYDKKIDVVEL   80 (247)
T ss_pred             EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCcCCCCceEEEECCEEccccccchHHH
Confidence            466777777753     449999999999999999999999999999999 777     99999999887421      1


Q ss_pred             ccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHhC
Q 023675          146 NRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       146 ~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      ...++|.+++       ..+.+..            . .....++...++.        .....+|+++++| .++++++
T Consensus        81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  160 (247)
T TIGR00972        81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA  160 (247)
T ss_pred             HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            1112222111       1111110            0 1111222233332        1234578899998 8999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .+|++  +++|||+..++......+++.+
T Consensus       161 ~~p~l--lllDEPt~~LD~~~~~~l~~~l  187 (247)
T TIGR00972       161 VEPEV--LLLDEPTSALDPIATGKIEELI  187 (247)
T ss_pred             cCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence            99998  9999999999988877665543

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.67  E-value=1.9e-16  Score=137.63  Aligned_cols=140  Identities=22%  Similarity=0.230  Sum_probs=101.7

Q ss_pred             CeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----ccccCC
Q 023675           81 NILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-----~~~~~~  149 (279)
                      .++++++.|+|.++      .|+.+++|+.++|+|+||||||||+++|+|++ .|.+|.|+++|.++..     .+...+
T Consensus         3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl-~p~~G~v~~~g~~~~~~~~~~~~~~~v   81 (235)
T COG1122           3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL-KPTSGEVLVDGLDTSSEKSLLELRQKV   81 (235)
T ss_pred             eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC-cCCCCEEEECCeeccchhhHHHhhcce
Confidence            46788889999765      29999999999999999999999999999999 8999999999987541     111112


Q ss_pred             CCCccc------------------------HHHHHHHHHHHHHHHHhCCc----chhcccCChHHHHH-HHHHHhCCCCC
Q 023675          150 SFKAED------------------------RVENIRRIGEVAKLFADAGV----ICIACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       150 ~~~~~~------------------------~~~~~~~v~~~~~~~~~~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      ++.++.                        ..+..+++.+.   +...++    ..-...+|+++++| ++|..++.+|+
T Consensus        82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~---l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~  158 (235)
T COG1122          82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA---LELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE  158 (235)
T ss_pred             EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHH---HHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC
Confidence            221111                        11122222222   222233    22345688999999 89999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHHh
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +  ++||||++.++.+..+.+.+...
T Consensus       159 i--liLDEPta~LD~~~~~~l~~~l~  182 (235)
T COG1122         159 I--LLLDEPTAGLDPKGRRELLELLK  182 (235)
T ss_pred             E--EEEcCCCCCCCHHHHHHHHHHHH
Confidence            8  99999999999998887665443

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.67  E-value=1.4e-15  Score=134.47  Aligned_cols=142  Identities=20%  Similarity=0.212  Sum_probs=98.9

Q ss_pred             CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---c---ccC
Q 023675           80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---L---NRD  148 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~---~~~  148 (279)
                      ..+++++++++|..+     .||++.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++...   +   ...
T Consensus        11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~i~~v~q~   89 (257)
T PRK11247         11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE-TPSAGELLAGTAPLAEAREDTRLMFQD   89 (257)
T ss_pred             CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEHHHhhCceEEEecC
Confidence            458899999888643     39999999999999999999999999999999 89999999999765211   0   011


Q ss_pred             CCCCc-ccHHHHHHH------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675          149 LSFKA-EDRVENIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (279)
Q Consensus       149 ~~~~~-~~~~~~~~~------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R  216 (279)
                      ..+-+ ....+.+..      -.....++...++..    .+..+|+++++| .++++++.+|++  ++||||+..++..
T Consensus        90 ~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l--llLDEPt~~LD~~  167 (257)
T PRK11247         90 ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL--LLLDEPLGALDAL  167 (257)
T ss_pred             ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHH
Confidence            11101 111111110      011222233333322    344688899998 999999999998  9999999999988


Q ss_pred             ChhhHHHH
Q 023675          217 DPKGLYKL  224 (279)
Q Consensus       217 ~~~~l~~~  224 (279)
                      ....+.+.
T Consensus       168 ~~~~l~~~  175 (257)
T PRK11247        168 TRIEMQDL  175 (257)
T ss_pred             HHHHHHHH
Confidence            77665543

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.67  E-value=6.8e-16  Score=131.48  Aligned_cols=141  Identities=18%  Similarity=0.195  Sum_probs=95.4

Q ss_pred             EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCcc
Q 023675           83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE  154 (279)
Q Consensus        83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~  154 (279)
                      +++++++.|.     ++.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...   ....++|.++
T Consensus         2 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q   80 (201)
T cd03231           2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS-PPLAGRVLLNGGPLDFQRDSIARGLLYLGH   80 (201)
T ss_pred             EEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccccHHhhhheEEecc
Confidence            3455555554     3459999999999999999999999999999999 89999999999876321   1111111111


Q ss_pred             --------cHHHHHHH------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675          155 --------DRVENIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (279)
Q Consensus       155 --------~~~~~~~~------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~  215 (279)
                              ...+.+..      ...+...+...++..    ....+++++++| .++++++.+|++  +++|||+..++.
T Consensus        81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~~LD~  158 (201)
T cd03231          81 APGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPL--WILDEPTTALDK  158 (201)
T ss_pred             ccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCH
Confidence                    11111110      011122222233321    234578888888 999999999998  999999999999


Q ss_pred             cChhhHHHHHh
Q 023675          216 RDPKGLYKLAR  226 (279)
Q Consensus       216 R~~~~l~~~~~  226 (279)
                      ...+.+.+.+.
T Consensus       159 ~~~~~l~~~l~  169 (201)
T cd03231         159 AGVARFAEAMA  169 (201)
T ss_pred             HHHHHHHHHHH
Confidence            88777665443

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.67  E-value=6e-16  Score=134.34  Aligned_cols=140  Identities=19%  Similarity=0.162  Sum_probs=94.2

Q ss_pred             EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCC
Q 023675           83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFK  152 (279)
Q Consensus        83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~  152 (279)
                      +++++++.|.     ++.||++++|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++...     ....++|.
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~   80 (230)
T TIGR03410         2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL-PVKSGSIRLDGEDITKLPPHERARAGIAYV   80 (230)
T ss_pred             EEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence            4566666665     3459999999999999999999999999999999 89999999999876321     11112222


Q ss_pred             ccc--------HHHHHH------------HHHHHHHHHH--hCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675          153 AED--------RVENIR------------RIGEVAKLFA--DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (279)
Q Consensus       153 ~~~--------~~~~~~------------~v~~~~~~~~--~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p  209 (279)
                      +++        ..+.+.            ...+....+.  ..........+|+++++| .++++++.+|++  +++|||
T Consensus        81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~i--lllDEP  158 (230)
T TIGR03410        81 PQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKL--LLLDEP  158 (230)
T ss_pred             ccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEecCC
Confidence            211        111111            0011111111  000112234578888888 899999999998  999999


Q ss_pred             ccchhccChhhHHHHH
Q 023675          210 LQVCEARDPKGLYKLA  225 (279)
Q Consensus       210 ~~~l~~R~~~~l~~~~  225 (279)
                      +..++......+.+.+
T Consensus       159 t~~LD~~~~~~l~~~l  174 (230)
T TIGR03410       159 TEGIQPSIIKDIGRVI  174 (230)
T ss_pred             cccCCHHHHHHHHHHH
Confidence            9999988777655543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.67  E-value=4.5e-16  Score=136.02  Aligned_cols=141  Identities=21%  Similarity=0.238  Sum_probs=96.4

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------cccCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLS  150 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------~~~~~~  150 (279)
                      ++++++++.|.+     +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++...      ....++
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   80 (240)
T PRK09493          2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-EITSGDLIVDGLKVNDPKVDERLIRQEAG   80 (240)
T ss_pred             EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCChhHHHHhhceE
Confidence            456677766653     449999999999999999999999999999999 89999999999886421      111122


Q ss_pred             CCccc--------HHHHHHH-------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          151 FKAED--------RVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       151 ~~~~~--------~~~~~~~-------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                      |.++.        ..+.+..             ...+...+...++..    ....+|+++++| .++++++.+|++  +
T Consensus        81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--l  158 (240)
T PRK09493         81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL--M  158 (240)
T ss_pred             EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE--E
Confidence            11111        1111100             011122233333322    234578888888 999999999998  9


Q ss_pred             EEeCCccchhccChhhHHHHH
Q 023675          205 FMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++|||+..++......+.+.+
T Consensus       159 llDEP~~~LD~~~~~~l~~~l  179 (240)
T PRK09493        159 LFDEPTSALDPELRHEVLKVM  179 (240)
T ss_pred             EEcCCcccCCHHHHHHHHHHH
Confidence            999999999998877655443

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=6.4e-16  Score=135.19  Aligned_cols=141  Identities=17%  Similarity=0.192  Sum_probs=96.6

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----------ccc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----------GLN  146 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----------~~~  146 (279)
                      ++++++++.|..     +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++..          ...
T Consensus         3 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   81 (242)
T PRK11124          3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE-MPRSGTLNIAGNHFDFSKTPSDKAIRELR   81 (242)
T ss_pred             EEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecccccccchhhHHHHH
Confidence            566777777754     338999999999999999999999999999999 8999999999987520          001


Q ss_pred             cCCCCCccc--------HHHHHHH-------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675          147 RDLSFKAED--------RVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       147 ~~~~~~~~~--------~~~~~~~-------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      ..++|.++.        ..+.+..             ...+...+...++..    ....+|+++++| .++++++.+|+
T Consensus        82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~  161 (242)
T PRK11124         82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ  161 (242)
T ss_pred             hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            112221111        1111110             011122222333322    234578889888 99999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHH
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +  +++|||++.++......+++.+
T Consensus       162 l--lilDEPt~~LD~~~~~~l~~~l  184 (242)
T PRK11124        162 V--LLFDEPTAALDPEITAQIVSII  184 (242)
T ss_pred             E--EEEcCCCCcCCHHHHHHHHHHH
Confidence            8  9999999999988776655443

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.67  E-value=1.6e-15  Score=129.44  Aligned_cols=142  Identities=18%  Similarity=0.227  Sum_probs=96.1

Q ss_pred             eEEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCC---
Q 023675           82 ILWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLS---  150 (279)
Q Consensus        82 i~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~---  150 (279)
                      +++++++++|.     .+.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...   ....++   
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~v~~~g~~~~~~~~~~~~~~~~~~   80 (204)
T PRK13538          2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA-RPDAGEVLWQGEPIRRQRDEYHQDLLYLG   80 (204)
T ss_pred             eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcccchHHhhhheEEeC
Confidence            34556655554     3459999999999999999999999999999999 89999999999876321   011111   


Q ss_pred             ----CCc-ccHHHHHHH---------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675          151 ----FKA-EDRVENIRR---------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (279)
Q Consensus       151 ----~~~-~~~~~~~~~---------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~  211 (279)
                          +.+ ....+.+..         ...+..++...++..    ....+|+++++| .++++++.+|++  +++|||++
T Consensus        81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~  158 (204)
T PRK13538         81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL--WILDEPFT  158 (204)
T ss_pred             CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCc
Confidence                111 011111111         011122233333321    234578888888 899999999998  99999999


Q ss_pred             chhccChhhHHHHHh
Q 023675          212 VCEARDPKGLYKLAR  226 (279)
Q Consensus       212 ~l~~R~~~~l~~~~~  226 (279)
                      .++......+++.+.
T Consensus       159 ~LD~~~~~~l~~~l~  173 (204)
T PRK13538        159 AIDKQGVARLEALLA  173 (204)
T ss_pred             cCCHHHHHHHHHHHH
Confidence            999888777655433

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=5.6e-16  Score=141.10  Aligned_cols=143  Identities=16%  Similarity=0.093  Sum_probs=100.4

Q ss_pred             CCeEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----
Q 023675           80 TNILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----  144 (279)
Q Consensus        80 ~~i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----  144 (279)
                      ..|+++++++.|..          +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...     
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~-~p~~G~I~i~g~~~~~~~~~~~   98 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI-KSKYGTIQVGDIYIGDKKNNHE   98 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCEEccccccccc
Confidence            45899999999863          228999999999999999999999999999999 89999999999765321     


Q ss_pred             ---------------cccCCCCCccc---------HHHHHH-----------HH-HHHHHHHHhCCcc-----hhcccCC
Q 023675          145 ---------------LNRDLSFKAED---------RVENIR-----------RI-GEVAKLFADAGVI-----CIACLIS  183 (279)
Q Consensus       145 ---------------~~~~~~~~~~~---------~~~~~~-----------~v-~~~~~~~~~~~~~-----~i~~~~~  183 (279)
                                     +...+++.+++         ..+.+.           .. ......+...++.     ..+..+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS  178 (320)
T PRK13631         99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS  178 (320)
T ss_pred             ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence                           11112222221         111110           00 1111222233332     1234588


Q ss_pred             hHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          184 PYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       184 ~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++++| .++++++.+|++  +++|||+..++....+.+++.+
T Consensus       179 gGqkqRvaiAraL~~~p~i--LLLDEPtsgLD~~~~~~l~~~L  219 (320)
T PRK13631        179 GGQKRRVAIAGILAIQPEI--LIFDEPTAGLDPKGEHEMMQLI  219 (320)
T ss_pred             HHHHHHHHHHHHHHcCCCE--EEEECCccCCCHHHHHHHHHHH
Confidence            999999 999999999998  9999999999998877765543

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=6.4e-16  Score=138.67  Aligned_cols=141  Identities=18%  Similarity=0.163  Sum_probs=99.6

Q ss_pred             eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675           82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------  144 (279)
Q Consensus        82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------  144 (279)
                      ++++++++.|..          +.||++++|++++|+|+||||||||+++|+|.+ .|++|.|++||.++...       
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~   81 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL-KPTTGTVTVDDITITHKTKDKYIR   81 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECccccccchHH
Confidence            567777777742          238999999999999999999999999999999 89999999999887421       


Q ss_pred             -cccCCCCCcccH---------HHHHHH------------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhC
Q 023675          145 -LNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       145 -~~~~~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~  196 (279)
                       ....++|.+++.         .+.+..            ...+..++...++.     ..+..+|+++++| .++++++
T Consensus        82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~  161 (286)
T PRK13646         82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA  161 (286)
T ss_pred             HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence             122334333321         111100            01112223333442     1345688899998 8999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .+|++  +++|||+..++......+.+.+
T Consensus       162 ~~p~i--lllDEPt~~LD~~~~~~l~~~l  188 (286)
T PRK13646        162 MNPDI--IVLDEPTAGLDPQSKRQVMRLL  188 (286)
T ss_pred             hCCCE--EEEECCcccCCHHHHHHHHHHH
Confidence            99998  9999999999998877755443

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.67  E-value=4.8e-16  Score=137.37  Aligned_cols=142  Identities=20%  Similarity=0.128  Sum_probs=98.5

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-----cccc------
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-----CRHG------  144 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-----i~~~------  144 (279)
                      .+++++++++|.+     ..||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.+     +...      
T Consensus         6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~i~~~~~~~~~   84 (258)
T PRK11701          6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL-APDAGEVHYRMRDGQLRDLYALSEAERR   84 (258)
T ss_pred             eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCccccccccccCCHHHHH
Confidence            4778888888764     349999999999999999999999999999999 8999999999987     4210      


Q ss_pred             --cccCCCCCcccH----------HHHH------------HH-HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHH
Q 023675          145 --LNRDLSFKAEDR----------VENI------------RR-IGEVAKLFADAGVI-----CIACLISPYRKDR-DACR  193 (279)
Q Consensus       145 --~~~~~~~~~~~~----------~~~~------------~~-v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar  193 (279)
                        ....++|.+++.          .+.+            .. ......++...++.     ..+..+|+++++| .+++
T Consensus        85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar  164 (258)
T PRK11701         85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR  164 (258)
T ss_pred             HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence              011122222111          0000            00 01111222233332     2345688899998 8999


Q ss_pred             HhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++.+|++  +++|||+..++......+.+.+
T Consensus       165 al~~~p~l--lllDEPt~~LD~~~~~~l~~~l  194 (258)
T PRK11701        165 NLVTHPRL--VFMDEPTGGLDVSVQARLLDLL  194 (258)
T ss_pred             HHhcCCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence            99999998  9999999999988877665543

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.67  E-value=1.8e-16  Score=131.58  Aligned_cols=140  Identities=21%  Similarity=0.245  Sum_probs=92.3

Q ss_pred             eEEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc----------
Q 023675           82 ILWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----------  146 (279)
Q Consensus        82 i~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~----------  146 (279)
                      |++++++-+|.     +..|+.+++|.+.+|+||||+|||||+..++|++ ..++|.|++||.++...-+          
T Consensus         2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-~~d~G~i~i~g~~~~~~~s~~LAk~lSIL   80 (252)
T COG4604           2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL-KKDSGEITIDGLELTSTPSKELAKKLSIL   80 (252)
T ss_pred             eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc-cccCceEEEeeeecccCChHHHHHHHHHH
Confidence            34555555555     3559999999999999999999999999999999 8999999999999853210          


Q ss_pred             ------------------cCCCCCcccHH-HHHHHHHHHHHHHHhCCcc-hhcccCChHHHHHH-HHHHhCCCCCccEEE
Q 023675          147 ------------------RDLSFKAEDRV-ENIRRIGEVAKLFADAGVI-CIACLISPYRKDRD-ACRSMLPEGDFIEVF  205 (279)
Q Consensus       147 ------------------~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~-~i~~~~~~~~~~r~-~ar~l~~~~~~i~i~  205 (279)
                                        +.+.|+..... +-...+.+....+.-..+. ...+.++++++||+ +|.-++.+.++  |+
T Consensus        81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdy--vl  158 (252)
T COG4604          81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDY--VL  158 (252)
T ss_pred             HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcE--EE
Confidence                              11122211111 1111122211111111111 24567899999995 45566677788  99


Q ss_pred             EeCCccchhccChhhHHHH
Q 023675          206 MDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~~  224 (279)
                      ||||+..|+-.-.-.+++.
T Consensus       159 LDEPLNNLDmkHsv~iMk~  177 (252)
T COG4604         159 LDEPLNNLDMKHSVQIMKI  177 (252)
T ss_pred             ecCcccccchHHHHHHHHH
Confidence            9999999988766554443

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.67  E-value=1.4e-15  Score=130.30  Aligned_cols=141  Identities=18%  Similarity=0.200  Sum_probs=95.8

Q ss_pred             EEeecceeecC---CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCcc---
Q 023675           83 LWHKNSVDKRD---RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE---  154 (279)
Q Consensus        83 ~~~~~~~~~~~---~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~~---  154 (279)
                      ++++++++|..   +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++....  ...++|.++   
T Consensus         2 ~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~   80 (211)
T cd03298           2 RLDKIRFSYGEQPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE-TPQSGRVLINGVDVTAAPPADRPVSMLFQENN   80 (211)
T ss_pred             EEEeEEEEeCCEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcCcCCHhHccEEEEecccc
Confidence            45566666643   458999999999999999999999999999999 899999999998763210  001111111   


Q ss_pred             -----cHHHHHH------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675          155 -----DRVENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (279)
Q Consensus       155 -----~~~~~~~------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~  212 (279)
                           ...+.+.            .-..+...+...++..    ....+|+++++| .++++++.+|++  +++|||++.
T Consensus        81 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l--lllDEP~~~  158 (211)
T cd03298          81 LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV--LLLDEPFAA  158 (211)
T ss_pred             cCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCccc
Confidence                 1111110            0011222233333322    344688889888 999999999998  999999999


Q ss_pred             hhccChhhHHHHHh
Q 023675          213 CEARDPKGLYKLAR  226 (279)
Q Consensus       213 l~~R~~~~l~~~~~  226 (279)
                      ++....+.+.+.+.
T Consensus       159 LD~~~~~~l~~~l~  172 (211)
T cd03298         159 LDPALRAEMLDLVL  172 (211)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99988777655443

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.66  E-value=5e-16  Score=133.96  Aligned_cols=143  Identities=20%  Similarity=0.192  Sum_probs=96.7

Q ss_pred             CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675           81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~  149 (279)
                      .+++++++++|..       +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...    ....+
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i   80 (221)
T cd03244           2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-ELSSGSILIDGVDISKIGLHDLRSRI   80 (221)
T ss_pred             cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEECCEEhHhCCHHHHhhhE
Confidence            4677788777753       238999999999999999999999999999999 89999999999876320    11111


Q ss_pred             CCCccc-------HHHHHHH-----HHHHHHHHHhCCc---------------chhcccCChHHHHH-HHHHHhCCCCCc
Q 023675          150 SFKAED-------RVENIRR-----IGEVAKLFADAGV---------------ICIACLISPYRKDR-DACRSMLPEGDF  201 (279)
Q Consensus       150 ~~~~~~-------~~~~~~~-----v~~~~~~~~~~~~---------------~~i~~~~~~~~~~r-~~ar~l~~~~~~  201 (279)
                      +|.+++       ..+.+..     ...+...+...++               ......+|+++++| .++++++.+|++
T Consensus        81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l  160 (221)
T cd03244          81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI  160 (221)
T ss_pred             EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            111111       0110000     0000111111111               11344678888888 999999999998


Q ss_pred             cEEEEeCCccchhccChhhHHHHHh
Q 023675          202 IEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       202 i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                        +++|||+..++....+.+++.+.
T Consensus       161 --lllDEP~~~LD~~~~~~l~~~l~  183 (221)
T cd03244         161 --LVLDEATASVDPETDALIQKTIR  183 (221)
T ss_pred             --EEEeCccccCCHHHHHHHHHHHH
Confidence              99999999999988777666554

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.66  E-value=7.3e-16  Score=136.95  Aligned_cols=145  Identities=20%  Similarity=0.165  Sum_probs=100.4

Q ss_pred             CCCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------
Q 023675           79 STNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------  143 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------  143 (279)
                      ...|+++++++.|.++     .||++++|++++|+|+||||||||+++|+|.+..    |.+|.|+++|.++..      
T Consensus        17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~   96 (267)
T PRK14235         17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV   96 (267)
T ss_pred             CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence            3568899999988643     3899999999999999999999999999999842    489999999987632      


Q ss_pred             ccccCCCCCcc-------cHHHHHHH--------------HHHHHHHHHhCCcc--------hhcccCChHHHHH-HHHH
Q 023675          144 GLNRDLSFKAE-------DRVENIRR--------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACR  193 (279)
Q Consensus       144 ~~~~~~~~~~~-------~~~~~~~~--------------v~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar  193 (279)
                      .....++|.++       ...+.+..              ...+...+...++.        ..+..+|+++++| .+++
T Consensus        97 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar  176 (267)
T PRK14235         97 ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIAR  176 (267)
T ss_pred             HHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence            01111222111       11111110              01112223333331        1244588899998 9999


Q ss_pred             HhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++.+|++  ++||||+..++....+.+++.+
T Consensus       177 al~~~p~l--llLDEPt~~LD~~~~~~l~~~L  206 (267)
T PRK14235        177 AIAVSPEV--ILMDEPCSALDPIATAKVEELI  206 (267)
T ss_pred             HHHcCCCE--EEEeCCCcCCCHHHHHHHHHHH
Confidence            99999998  9999999999988877655543

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.66  E-value=1.8e-16  Score=133.00  Aligned_cols=129  Identities=25%  Similarity=0.215  Sum_probs=84.9

Q ss_pred             cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-------------ccCCCCCcccHH-
Q 023675           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------------NRDLSFKAEDRV-  157 (279)
Q Consensus        92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-------------~~~~~~~~~~~~-  157 (279)
                      .++.+|++++||+++|+||||+|||||++.|+|.+ .|++|.+.++|.++..+-             +..+.|.+.-+. 
T Consensus        17 l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel-~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eV   95 (259)
T COG4559          17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL-SPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEV   95 (259)
T ss_pred             ccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc-CCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHH
Confidence            34569999999999999999999999999999999 899999999999885321             111222221110 


Q ss_pred             ------------H--HHHHHHHHHHHHHhCCcchh----cccCChHHHHH-HHHHHhCCCCCcc----EEEEeCCccchh
Q 023675          158 ------------E--NIRRIGEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFI----EVFMDVPLQVCE  214 (279)
Q Consensus       158 ------------~--~~~~v~~~~~~~~~~~~~~i----~~~~~~~~~~r-~~ar~l~~~~~~i----~i~ld~p~~~l~  214 (279)
                                  +  .-.++.  .+.+...++..+    ...+|+++++| ..+|-++.-+..+    .++||||++.++
T Consensus        96 V~mGr~p~~~g~~~~e~~~i~--~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLD  173 (259)
T COG4559          96 VQMGRIPHRSGREPEEDERIA--AQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD  173 (259)
T ss_pred             HHhcccccccCCCchhhHHHH--HHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccc
Confidence                        0  001111  111222222221    22478899999 7888776543222    489999999999


Q ss_pred             ccChhhHHH
Q 023675          215 ARDPKGLYK  223 (279)
Q Consensus       215 ~R~~~~l~~  223 (279)
                      -.-+...++
T Consensus       174 i~HQ~~tl~  182 (259)
T COG4559         174 IAHQHHTLR  182 (259)
T ss_pred             hHHHHHHHH
Confidence            887665443

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.66  E-value=6.8e-16  Score=136.30  Aligned_cols=142  Identities=19%  Similarity=0.209  Sum_probs=99.7

Q ss_pred             CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----------
Q 023675           80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----------  143 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-----------  143 (279)
                      +.++++++++.|..     ..+|++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++..           
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~   82 (257)
T PRK10619          4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGSIVVNGQTINLVRDKDGQLKVA   82 (257)
T ss_pred             ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccccccccccccc
Confidence            45788888888864     349999999999999999999999999999999 8999999999987631           


Q ss_pred             ------ccccCCCCCcc--------cHHHHHHH-------------HHHHHHHHHhCCcch-----hcccCChHHHHH-H
Q 023675          144 ------GLNRDLSFKAE--------DRVENIRR-------------IGEVAKLFADAGVIC-----IACLISPYRKDR-D  190 (279)
Q Consensus       144 ------~~~~~~~~~~~--------~~~~~~~~-------------v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~  190 (279)
                            .....++|.++        ...+.+..             -..+...+...++..     ....+++++++| .
T Consensus        83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~  162 (257)
T PRK10619         83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS  162 (257)
T ss_pred             cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence                  00111222111        11111110             011222233333322     234588889888 8


Q ss_pred             HHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       191 ~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++++++.+|++  +++|||+..++....+.+.+.
T Consensus       163 laral~~~p~l--lllDEPt~~LD~~~~~~l~~~  194 (257)
T PRK10619        163 IARALAMEPEV--LLFDEPTSALDPELVGEVLRI  194 (257)
T ss_pred             HHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence            99999999998  999999999999887776554

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.66  E-value=8.5e-16  Score=135.26  Aligned_cols=141  Identities=13%  Similarity=0.139  Sum_probs=95.9

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------------
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------------  144 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------------  144 (279)
                      |+++++++.|..     +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...            
T Consensus         1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~   79 (252)
T TIGR03005         1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE-PIDEGQIQVEGEQLYHMPGRNGPLVPADE   79 (252)
T ss_pred             CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccccccch
Confidence            356677777754     348999999999999999999999999999999 89999999999876311            


Q ss_pred             -----cccCCCCCcc--------cHHHHHHH-------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHH
Q 023675          145 -----LNRDLSFKAE--------DRVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACR  193 (279)
Q Consensus       145 -----~~~~~~~~~~--------~~~~~~~~-------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar  193 (279)
                           ....+++.++        ...+.+..             ...+...+...++..    ....+++++++| .+++
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar  159 (252)
T TIGR03005        80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR  159 (252)
T ss_pred             hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence                 0111111111        11111110             011122233333322    234578888888 9999


Q ss_pred             HhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++.+|++  +++|||+..++......+++.+
T Consensus       160 al~~~p~l--lllDEP~~~LD~~~~~~l~~~l  189 (252)
T TIGR03005       160 ALAMRPKV--MLFDEVTSALDPELVGEVLNVI  189 (252)
T ss_pred             HHHcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence            99999988  9999999999988776655433

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=7.3e-16  Score=137.83  Aligned_cols=142  Identities=19%  Similarity=0.195  Sum_probs=100.3

Q ss_pred             CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675           81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~  149 (279)
                      .++++++++.|..       +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...    ....+
T Consensus         5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~-~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13635          5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL-LPEAGTITVGGMVLSEETVWDVRRQV   83 (279)
T ss_pred             eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECCcCcHHHHhhhe
Confidence            3778888888853       238999999999999999999999999999999 89999999999887421    11122


Q ss_pred             CCCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          150 SFKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       150 ~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      +|.+++.         .+.+..            ...+...+...++..    ....+|+++++| .++++++.+|++  
T Consensus        84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l--  161 (279)
T PRK13635         84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDI--  161 (279)
T ss_pred             EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--
Confidence            3222221         111110            001122222223322    344578888888 999999999998  


Q ss_pred             EEEeCCccchhccChhhHHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++|||+..++......+++.+
T Consensus       162 llLDEPt~gLD~~~~~~l~~~l  183 (279)
T PRK13635        162 IILDEATSMLDPRGRREVLETV  183 (279)
T ss_pred             EEEeCCcccCCHHHHHHHHHHH
Confidence            9999999999998877766544

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.66  E-value=1.1e-15  Score=134.55  Aligned_cols=145  Identities=22%  Similarity=0.205  Sum_probs=98.6

Q ss_pred             CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc--c--CCccEEEEcCeeccc------c
Q 023675           80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------G  144 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~--~--~~~G~i~ldgd~i~~------~  144 (279)
                      ..+++++++++|.+     +.||++.+|++++|+|+||||||||+++|+|++.  .  |++|.|+++|.++..      .
T Consensus         5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   84 (253)
T PRK14242          5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE   84 (253)
T ss_pred             cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence            34788888888864     3499999999999999999999999999999863  1  579999999987632      0


Q ss_pred             cccCCCCCcc-------cHHHHHHH-------------HHHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHh
Q 023675          145 LNRDLSFKAE-------DRVENIRR-------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       145 ~~~~~~~~~~-------~~~~~~~~-------------v~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ....++|.++       ...+.+..             ..++...+...++.        .....+|+++++| .+++++
T Consensus        85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral  164 (253)
T PRK14242         85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL  164 (253)
T ss_pred             HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence            1111222211       11111110             01111222222321        1234588899988 899999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +.+|++  +++|||+..++......+.+.++
T Consensus       165 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~  193 (253)
T PRK14242        165 AVEPEV--LLMDEPASALDPIATQKIEELIH  193 (253)
T ss_pred             hcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            999988  99999999999887776655443

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.66  E-value=1.2e-15  Score=132.29  Aligned_cols=142  Identities=20%  Similarity=0.201  Sum_probs=97.8

Q ss_pred             CeEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675           81 NILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------  144 (279)
Q Consensus        81 ~i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------  144 (279)
                      .+++++++++|..         +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...       
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~   84 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-DGSSGEVSLVGQPLHQMDEEARAK   84 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeeEEECCEEcccCCHHHHHH
Confidence            4677787777753         238999999999999999999999999999999 89999999999876321       


Q ss_pred             -cccCCCCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675          145 -LNRDLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       145 -~~~~~~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                       ....++|.++.        ..+.+..            ..++...+...++..    ....+|+++++| .++++++.+
T Consensus        85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~  164 (228)
T PRK10584         85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR  164 (228)
T ss_pred             HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence             00112211111        1111100            011222223333322    344588899988 899999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      |++  ++||||+..++......+.+.+
T Consensus       165 p~l--lllDEPt~~LD~~~~~~l~~~l  189 (228)
T PRK10584        165 PDV--LFADEPTGNLDRQTGDKIADLL  189 (228)
T ss_pred             CCE--EEEeCCCCCCCHHHHHHHHHHH
Confidence            998  9999999999988777655544

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.66  E-value=6e-16  Score=135.96  Aligned_cols=140  Identities=19%  Similarity=0.181  Sum_probs=96.9

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------------
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------------  144 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------------  144 (279)
                      +++++++++|.+     +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...            
T Consensus         4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   82 (250)
T PRK11264          4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE-QPEAGTIRVGDITIDTARSLSQQKGLIRQ   82 (250)
T ss_pred             EEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccccccchhhHHHH
Confidence            567777777754     348999999999999999999999999999999 89999999999876311            


Q ss_pred             cccCCCCCcc--------cHHHHHHH------------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675          145 LNRDLSFKAE--------DRVENIRR------------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       145 ~~~~~~~~~~--------~~~~~~~~------------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      ....++|.++        ...+.+..            . ..+..++...++..    ....+|+++++| .++++++.+
T Consensus        83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~  162 (250)
T PRK11264         83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR  162 (250)
T ss_pred             hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence            1111222111        11111110            0 11122233333322    344578889888 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      |++  +++|||++.++......+++.
T Consensus       163 p~l--llLDEPt~~LD~~~~~~l~~~  186 (250)
T PRK11264        163 PEV--ILFDEPTSALDPELVGEVLNT  186 (250)
T ss_pred             CCE--EEEeCCCccCCHHHHHHHHHH
Confidence            998  999999999998877765543

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.66  E-value=5.4e-16  Score=140.14  Aligned_cols=141  Identities=15%  Similarity=0.164  Sum_probs=97.0

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKA  153 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~  153 (279)
                      +++++++++|.+     +.||++++|++++|+|+||||||||+++|+|++ .|++|.|.++|.++...   ....++|.+
T Consensus         3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~-~~~~G~i~i~g~~~~~~~~~~~~~ig~~~   81 (301)
T TIGR03522         3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL-PPDSGSVQVCGEDVLQNPKEVQRNIGYLP   81 (301)
T ss_pred             EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccChHHHHhceEEec
Confidence            456666666653     449999999999999999999999999999999 89999999999877421   111122211


Q ss_pred             cc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675          154 ED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (279)
Q Consensus       154 ~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~  208 (279)
                      +.        ..+.+..            ......++...++..    .+..+|+++++| .++++++.+|++  ++|||
T Consensus        82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--liLDE  159 (301)
T TIGR03522        82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV--LILDE  159 (301)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence            11        1111110            011122222333322    344578888888 899999999998  99999


Q ss_pred             CccchhccChhhHHHHH
Q 023675          209 PLQVCEARDPKGLYKLA  225 (279)
Q Consensus       209 p~~~l~~R~~~~l~~~~  225 (279)
                      |+..++....+.+.+.+
T Consensus       160 Pt~gLD~~~~~~l~~~l  176 (301)
T TIGR03522       160 PTTGLDPNQLVEIRNVI  176 (301)
T ss_pred             CcccCCHHHHHHHHHHH
Confidence            99999988777655443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=1.5e-15  Score=132.90  Aligned_cols=141  Identities=18%  Similarity=0.214  Sum_probs=97.5

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK  152 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~  152 (279)
                      +++++++++|..     +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...    ....++|.
T Consensus         4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~i~~~   82 (241)
T PRK14250          4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI-DPTEGSILIDGVDIKTIDVIDLRRKIGMV   82 (241)
T ss_pred             EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence            567777777753     349999999999999999999999999999999 89999999999876321    11112222


Q ss_pred             ccc-------HHHHHHH--------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675          153 AED-------RVENIRR--------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (279)
Q Consensus       153 ~~~-------~~~~~~~--------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~  211 (279)
                      +++       ..+.+..        ..++..++...++.     .....+|+++++| .++++++.+|++  +++|||+.
T Consensus        83 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~  160 (241)
T PRK14250         83 FQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEV--LLLDEPTS  160 (241)
T ss_pred             ecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCcc
Confidence            221       1111110        01112222233332     1234578889888 899999999998  99999999


Q ss_pred             chhccChhhHHHHH
Q 023675          212 VCEARDPKGLYKLA  225 (279)
Q Consensus       212 ~l~~R~~~~l~~~~  225 (279)
                      .++....+.+++.+
T Consensus       161 ~LD~~~~~~l~~~l  174 (241)
T PRK14250        161 ALDPTSTEIIEELI  174 (241)
T ss_pred             cCCHHHHHHHHHHH
Confidence            99998777655543

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=6.5e-16  Score=138.16  Aligned_cols=140  Identities=16%  Similarity=0.174  Sum_probs=98.1

Q ss_pred             eEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675           82 ILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL  149 (279)
Q Consensus        82 i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~  149 (279)
                      +++++++++|..        +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    ....+
T Consensus         5 l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13650          5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL-EAESGQIIIDGDLLTEENVWDIRHKI   83 (279)
T ss_pred             EEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECCcCcHHHHHhhc
Confidence            677777777752        338999999999999999999999999999999 89999999999887421    11122


Q ss_pred             CCCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          150 SFKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       150 ~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      +|.+++.         .+.+..            ...+...+...++..    ....+|+++++| .++++++.+|++  
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l--  161 (279)
T PRK13650         84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI--  161 (279)
T ss_pred             eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE--
Confidence            3322221         111110            001112222223322    334678899888 999999999998  


Q ss_pred             EEEeCCccchhccChhhHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +++|||++.++....+.+++.
T Consensus       162 LlLDEPt~~LD~~~~~~l~~~  182 (279)
T PRK13650        162 IILDEATSMLDPEGRLELIKT  182 (279)
T ss_pred             EEEECCcccCCHHHHHHHHHH
Confidence            999999999999877765543

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.66  E-value=2.2e-15  Score=128.92  Aligned_cols=141  Identities=18%  Similarity=0.166  Sum_probs=95.7

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCCCCCc--
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKA--  153 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~~~~~--  153 (279)
                      ++++++++.|..     +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|.+  
T Consensus         3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   81 (207)
T PRK13539          3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL-PPAAGTIKLDGGDIDDPDVAEACHYLGHR   81 (207)
T ss_pred             EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEeCcchhhHhhcEEecCC
Confidence            456677666643     449999999999999999999999999999999 89999999999875310 111111111  


Q ss_pred             ------ccHHHHHHH--------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675          154 ------EDRVENIRR--------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (279)
Q Consensus       154 ------~~~~~~~~~--------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~  214 (279)
                            ....+.+..        -..+...+...++..    ....+++++++| .++++++.+|++  +++|||+..++
T Consensus        82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD  159 (207)
T PRK13539         82 NAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI--WILDEPTAALD  159 (207)
T ss_pred             CcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCC
Confidence                  011111110        011222233333322    233578888888 999999999998  99999999999


Q ss_pred             ccChhhHHHHH
Q 023675          215 ARDPKGLYKLA  225 (279)
Q Consensus       215 ~R~~~~l~~~~  225 (279)
                      ......+.+.+
T Consensus       160 ~~~~~~l~~~l  170 (207)
T PRK13539        160 AAAVALFAELI  170 (207)
T ss_pred             HHHHHHHHHHH
Confidence            88777655443

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.66  E-value=1.5e-16  Score=155.56  Aligned_cols=144  Identities=16%  Similarity=0.184  Sum_probs=101.2

Q ss_pred             CCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675           80 TNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD  148 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~  148 (279)
                      +.|++++++|+|+..       .||++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++...    +...
T Consensus       312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~  390 (569)
T PRK10789        312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDIRFHDIPLTKLQLDSWRSR  390 (569)
T ss_pred             CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEHhhCCHHHHHhh
Confidence            469999999999642       28999999999999999999999999999999 89999999999887421    1111


Q ss_pred             CCCCccc-------HH------------HHHHHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675          149 LSFKAED-------RV------------ENIRRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       149 ~~~~~~~-------~~------------~~~~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      +++.+++       .+            +.+....+.+.   ...  ..|+.    ..+..+|+++++| .++|+++++|
T Consensus       391 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~  470 (569)
T PRK10789        391 LAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA  470 (569)
T ss_pred             eEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            1111110       01            11111111110   011  11221    2334588999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHHh
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++  +++|||++.++....+.+++.+.
T Consensus       471 ~i--lllDEpts~LD~~~~~~i~~~l~  495 (569)
T PRK10789        471 EI--LILDDALSAVDGRTEHQILHNLR  495 (569)
T ss_pred             CE--EEEECccccCCHHHHHHHHHHHH
Confidence            98  99999999999998877665544

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.66  E-value=1.3e-15  Score=130.84  Aligned_cols=140  Identities=17%  Similarity=0.183  Sum_probs=95.4

Q ss_pred             EEeecceeec---CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc---
Q 023675           83 LWHKNSVDKR---DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE---  154 (279)
Q Consensus        83 ~~~~~~~~~~---~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~---  154 (279)
                      +++++++.|.   ...||++.+|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++...  ....++|.++   
T Consensus         2 ~~~~l~~~~~~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~   80 (213)
T TIGR01277         2 ALDKVRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI-EPASGSIKVNDQSHTGLAPYQRPVSMLFQENN   80 (213)
T ss_pred             eEEeeeEEeCCcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEcccCChhccceEEEeccCc
Confidence            4556666664   2458999999999999999999999999999999 89999999999876421  1111111111   


Q ss_pred             -----cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675          155 -----DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (279)
Q Consensus       155 -----~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~  212 (279)
                           ...+.+..            -..+...+...++..    ....+|+++++| .++++++.+|++  +++|||+..
T Consensus        81 ~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~~  158 (213)
T TIGR01277        81 LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI--LLLDEPFSA  158 (213)
T ss_pred             cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCCcc
Confidence                 11111110            011122233333322    234578888888 899999999988  999999999


Q ss_pred             hhccChhhHHHHH
Q 023675          213 CEARDPKGLYKLA  225 (279)
Q Consensus       213 l~~R~~~~l~~~~  225 (279)
                      ++......+++.+
T Consensus       159 LD~~~~~~~~~~l  171 (213)
T TIGR01277       159 LDPLLREEMLALV  171 (213)
T ss_pred             CCHHHHHHHHHHH
Confidence            9998877655543

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.66  E-value=1.2e-15  Score=130.03  Aligned_cols=131  Identities=21%  Similarity=0.209  Sum_probs=90.2

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc--------ccccCCCCCccc--------H
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFKAED--------R  156 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~--------~~~~~~~~~~~~--------~  156 (279)
                      +..||.+++|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++..        .....++|.+++        .
T Consensus        15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   93 (206)
T TIGR03608        15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE-KFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETV   93 (206)
T ss_pred             eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcH
Confidence            3559999999999999999999999999999999 8999999999988421        011112221111        1


Q ss_pred             HHHHHH------------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675          157 VENIRR------------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (279)
Q Consensus       157 ~~~~~~------------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~  219 (279)
                      .+.+..            ...+...+...++.    .....+|+++++| .++++++.+|++  +++|||++.++....+
T Consensus        94 ~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~l--lllDEPt~~LD~~~~~  171 (206)
T TIGR03608        94 EENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPL--ILADEPTGSLDPKNRD  171 (206)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcCCCCHHHHH
Confidence            111110            11122223333332    2344578888888 899999999998  9999999999988777


Q ss_pred             hHHHHHh
Q 023675          220 GLYKLAR  226 (279)
Q Consensus       220 ~l~~~~~  226 (279)
                      .+.+.++
T Consensus       172 ~l~~~l~  178 (206)
T TIGR03608       172 EVLDLLL  178 (206)
T ss_pred             HHHHHHH
Confidence            6655443

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.66  E-value=1.3e-15  Score=131.76  Aligned_cols=140  Identities=19%  Similarity=0.142  Sum_probs=94.3

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc---
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE---  154 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~---  154 (279)
                      ++++++++|..     ..+|++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++.......+++.++   
T Consensus         2 ~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~   80 (223)
T TIGR03740         2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL-RPTSGEIIFDGHPWTRKDLHKIGSLIESPP   80 (223)
T ss_pred             EEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEeccccccccEEEEcCCCC
Confidence            34555555543     348999999999999999999999999999999 899999999998753110011111111   


Q ss_pred             -----cHHHHHHHH--------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675          155 -----DRVENIRRI--------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (279)
Q Consensus       155 -----~~~~~~~~v--------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R  216 (279)
                           ...+.+...        ..+..++...++..    ....+|+++++| .++++++.+|++  +++|||+..++..
T Consensus        81 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~l--lllDEP~~~LD~~  158 (223)
T TIGR03740        81 LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL--LILDEPTNGLDPI  158 (223)
T ss_pred             ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE--EEECCCccCCCHH
Confidence                 111111110        11222233333322    234578888888 899999999988  9999999999998


Q ss_pred             ChhhHHHHH
Q 023675          217 DPKGLYKLA  225 (279)
Q Consensus       217 ~~~~l~~~~  225 (279)
                      ..+.+.+.+
T Consensus       159 ~~~~l~~~L  167 (223)
T TIGR03740       159 GIQELRELI  167 (223)
T ss_pred             HHHHHHHHH
Confidence            877655543

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.66  E-value=7.4e-16  Score=137.04  Aligned_cols=142  Identities=20%  Similarity=0.219  Sum_probs=98.4

Q ss_pred             CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------ccc
Q 023675           80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNR  147 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~  147 (279)
                      ..++++++++.|..     +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...       ...
T Consensus         6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (269)
T PRK11831          6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI-APDHGEILFDGENIPAMSRSRLYTVRK   84 (269)
T ss_pred             ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEccccChhhHHHHhh
Confidence            34788888888864     349999999999999999999999999999999 89999999999876311       011


Q ss_pred             CCCCCcc--------cHHHHHHHH-------------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCc
Q 023675          148 DLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDF  201 (279)
Q Consensus       148 ~~~~~~~--------~~~~~~~~v-------------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~  201 (279)
                      .++|.++        ...+.+...             ..+..++...++..    ....+|+++++| .++++++.+|++
T Consensus        85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l  164 (269)
T PRK11831         85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL  164 (269)
T ss_pred             cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            1121111        111111100             01111222333321    234588899988 899999999988


Q ss_pred             cEEEEeCCccchhccChhhHHHH
Q 023675          202 IEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       202 i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                        ++||||+..++....+.+.+.
T Consensus       165 --llLDEPt~~LD~~~~~~l~~~  185 (269)
T PRK11831        165 --IMFDEPFVGQDPITMGVLVKL  185 (269)
T ss_pred             --EEEcCCCccCCHHHHHHHHHH
Confidence              999999999999887765543

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.66  E-value=1.2e-16  Score=148.58  Aligned_cols=145  Identities=26%  Similarity=0.272  Sum_probs=104.9

Q ss_pred             CCCCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cc
Q 023675           78 KSTNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LN  146 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~  146 (279)
                      ..+.+.++++.+.-+.       +.||.+++|+.++|+||||||||||+++|.|.+ .|.+|.|++||-+++.+    +.
T Consensus       331 P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~VRLDga~l~qWd~e~lG  409 (580)
T COG4618         331 PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGSVRLDGADLRQWDREQLG  409 (580)
T ss_pred             CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCcEEecchhhhcCCHHHhc
Confidence            4567888888775543       339999999999999999999999999999999 89999999999998754    23


Q ss_pred             cCCCCCcccH-------HHHHHHHH---------HHHHH------HH--hCCcch----hcccCChHHHHH-HHHHHhCC
Q 023675          147 RDLSFKAEDR-------VENIRRIG---------EVAKL------FA--DAGVIC----IACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       147 ~~~~~~~~~~-------~~~~~~v~---------~~~~~------~~--~~~~~~----i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      .-++|-+++.       .+++.+..         +.+.+      ..  ..|+..    -+..+|++|+|| .++|++..
T Consensus       410 ~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG  489 (580)
T COG4618         410 RHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG  489 (580)
T ss_pred             cccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence            3456655533       23333321         11111      00  112211    234578999999 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHH
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +|.+  +.||||-+.++.--.+.|.+.+
T Consensus       490 ~P~l--vVLDEPNsNLD~~GE~AL~~Ai  515 (580)
T COG4618         490 DPFL--VVLDEPNSNLDSEGEAALAAAI  515 (580)
T ss_pred             CCcE--EEecCCCCCcchhHHHHHHHHH
Confidence            9877  9999999999988776665543

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.66  E-value=1.6e-16  Score=154.46  Aligned_cols=144  Identities=20%  Similarity=0.224  Sum_probs=101.1

Q ss_pred             CCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675           80 TNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD  148 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~  148 (279)
                      +.++++|++|+|+.       +.||++++|+.++|+|+||||||||+++|+|++ .|.+|.|.+||.++...    +...
T Consensus       315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~i~~~~~~~~~~~  393 (544)
T TIGR01842       315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-PPTSGSVRLDGADLKQWDRETFGKH  393 (544)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEehhhCCHHHHhhh
Confidence            46999999999964       228999999999999999999999999999999 89999999999887421    1111


Q ss_pred             CCCCcc-------cHHHH------------HHHHHH---HHHHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675          149 LSFKAE-------DRVEN------------IRRIGE---VAKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       149 ~~~~~~-------~~~~~------------~~~v~~---~~~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      +++.++       ..++.            +....+   ....+..  .|..    ..+..+|+++++| .++|+++.+|
T Consensus       394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~  473 (544)
T TIGR01842       394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP  473 (544)
T ss_pred             eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence            111111       00111            111001   1111111  1222    2345689999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHHh
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++  +++|||++.++....+.+.+.+.
T Consensus       474 ~i--lilDEpts~LD~~~~~~i~~~l~  498 (544)
T TIGR01842       474 KL--VVLDEPNSNLDEEGEQALANAIK  498 (544)
T ss_pred             CE--EEEeCCccccCHHHHHHHHHHHH
Confidence            98  99999999999988777665443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.65  E-value=2.1e-15  Score=133.47  Aligned_cols=147  Identities=19%  Similarity=0.164  Sum_probs=100.2

Q ss_pred             CCCCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc-----
Q 023675           78 KSTNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH-----  143 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~-----  143 (279)
                      ..+.++++++++.|.++     .||++++|++++|+|+||||||||+++|+|.+..    |.+|.|.++|.++..     
T Consensus        10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~   89 (260)
T PRK10744         10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI   89 (260)
T ss_pred             CCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence            34568889998888653     3899999999999999999999999999999831    579999999987631     


Q ss_pred             -ccccCCCCCccc-------HHHHHHH-------------HHHHHHHHHhCCc--------chhcccCChHHHHH-HHHH
Q 023675          144 -GLNRDLSFKAED-------RVENIRR-------------IGEVAKLFADAGV--------ICIACLISPYRKDR-DACR  193 (279)
Q Consensus       144 -~~~~~~~~~~~~-------~~~~~~~-------------v~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar  193 (279)
                       .+...++|.+++       ..+.+..             ...+...+...++        ......+|+++++| .+++
T Consensus        90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar  169 (260)
T PRK10744         90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR  169 (260)
T ss_pred             HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence             111112221111       1111100             0111122222232        11234588899888 9999


Q ss_pred             HhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +++.+|++  +++|||+..++....+.+++.++
T Consensus       170 al~~~p~l--llLDEPt~~LD~~~~~~l~~~L~  200 (260)
T PRK10744        170 GIAIRPEV--LLLDEPCSALDPISTGRIEELIT  200 (260)
T ss_pred             HHHCCCCE--EEEcCCCccCCHHHHHHHHHHHH
Confidence            99999998  99999999999987776655443

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.65  E-value=9.5e-16  Score=134.01  Aligned_cols=141  Identities=20%  Similarity=0.093  Sum_probs=94.7

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCeecccc-----cccCCCC
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHG-----LNRDLSF  151 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd~i~~~-----~~~~~~~  151 (279)
                      ++++++++|.+     +.||++++|++++|+|+||||||||+++|+|++. .|.+|.|+++|.++...     ....++|
T Consensus         2 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   81 (243)
T TIGR01978         2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFL   81 (243)
T ss_pred             eEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEe
Confidence            45666666653     4499999999999999999999999999999952 68999999999876321     1111222


Q ss_pred             Cccc--------HHHHHHH-------------------HHHHHHHHHhCCcc-----hhcc-cCChHHHHH-HHHHHhCC
Q 023675          152 KAED--------RVENIRR-------------------IGEVAKLFADAGVI-----CIAC-LISPYRKDR-DACRSMLP  197 (279)
Q Consensus       152 ~~~~--------~~~~~~~-------------------v~~~~~~~~~~~~~-----~i~~-~~~~~~~~r-~~ar~l~~  197 (279)
                      .+++        ..+.+..                   ...+...+...++.     .... .+|+++++| .++++++.
T Consensus        82 v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~  161 (243)
T TIGR01978        82 AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL  161 (243)
T ss_pred             eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc
Confidence            1111        0110000                   01112222223332     1222 388899988 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHH
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +|++  +++|||+..++....+.+++.+
T Consensus       162 ~p~l--lllDEPt~~LD~~~~~~l~~~l  187 (243)
T TIGR01978       162 EPKL--AILDEIDSGLDIDALKIVAEGI  187 (243)
T ss_pred             CCCE--EEecCCcccCCHHHHHHHHHHH
Confidence            9998  9999999999998877655543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.65  E-value=9.2e-16  Score=144.59  Aligned_cols=141  Identities=24%  Similarity=0.295  Sum_probs=103.2

Q ss_pred             CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----c-------cc
Q 023675           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----L-------NR  147 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~-------~~  147 (279)
                      .+|+..+..+.+.++.+|++.+|++++|+|.||+|||||.|.|+|.+ .|++|+|++||+.+...     .       ..
T Consensus        12 ~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~-~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~Q   90 (500)
T COG1129          12 RGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY-PPDSGEILIDGKPVAFSSPRDALAAGIATVHQ   90 (500)
T ss_pred             ecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-cCCCceEEECCEEccCCCHHHHHhCCcEEEee
Confidence            45666677777778889999999999999999999999999999999 89999999999987421     0       11


Q ss_pred             CCCCCc--------------------ccHHHHHHHHHHHHHHHHhCCc----chhcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          148 DLSFKA--------------------EDRVENIRRIGEVAKLFADAGV----ICIACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       148 ~~~~~~--------------------~~~~~~~~~v~~~~~~~~~~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      ++.+.+                    -++++..++   ...++...+.    ...+..++..++|. +++|++..++++ 
T Consensus        91 El~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~---A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arl-  166 (500)
T COG1129          91 ELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR---ARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARV-  166 (500)
T ss_pred             chhccCCccHHHHhhcccccccCCCccCHHHHHHH---HHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCE-
Confidence            111111                    111222222   2223333332    33455678888887 999999999888 


Q ss_pred             EEEEeCCccchhccChhhHHHHHh
Q 023675          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                       ++||||++.|..+..+.|++.++
T Consensus       167 -lIlDEPTaaLt~~E~~~Lf~~ir  189 (500)
T COG1129         167 -LILDEPTAALTVKETERLFDLIR  189 (500)
T ss_pred             -EEEcCCcccCCHHHHHHHHHHHH
Confidence             99999999999999998776544

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.65  E-value=2.7e-15  Score=129.97  Aligned_cols=141  Identities=16%  Similarity=0.130  Sum_probs=97.7

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF  151 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~  151 (279)
                      .++++++++.|..     +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...    ....++|
T Consensus         7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~   85 (225)
T PRK10247          7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDISTLKPEIYRQQVSY   85 (225)
T ss_pred             eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence            4778888887754     349999999999999999999999999999998 89999999999876321    1111121


Q ss_pred             Ccc-------cHHHHHHH----------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675          152 KAE-------DRVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (279)
Q Consensus       152 ~~~-------~~~~~~~~----------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~  208 (279)
                      .++       ...+.+..          .......+...++.     ..+..+|+++++| .++++++.+|++  +++||
T Consensus        86 ~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDE  163 (225)
T PRK10247         86 CAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV--LLLDE  163 (225)
T ss_pred             EecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence            111       11111110          01112223333332     1234578888888 999999999998  99999


Q ss_pred             CccchhccChhhHHHH
Q 023675          209 PLQVCEARDPKGLYKL  224 (279)
Q Consensus       209 p~~~l~~R~~~~l~~~  224 (279)
                      |+..++....+.+.+.
T Consensus       164 Pt~~LD~~~~~~l~~~  179 (225)
T PRK10247        164 ITSALDESNKHNVNEI  179 (225)
T ss_pred             CcccCCHHHHHHHHHH
Confidence            9999998877665543

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=1.2e-15  Score=135.62  Aligned_cols=142  Identities=15%  Similarity=0.158  Sum_probs=99.5

Q ss_pred             CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675           81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~  149 (279)
                      .+++++++++|..       +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    ....+
T Consensus         7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i   85 (269)
T PRK13648          7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE-KVKSGEIFYNNQAITDDNFEKLRKHI   85 (269)
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHhhe
Confidence            4788888888853       238999999999999999999999999999999 89999999999876321    11122


Q ss_pred             CCCcccH---------HHHHH-----------H-HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          150 SFKAEDR---------VENIR-----------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       150 ~~~~~~~---------~~~~~-----------~-v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      +|.+++.         ...+.           . ...+..++...++..    ....+|+++++| .++++++.+|++  
T Consensus        86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--  163 (269)
T PRK13648         86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV--  163 (269)
T ss_pred             eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE--
Confidence            3222221         01000           0 011112222233322    234578888888 999999999998  


Q ss_pred             EEEeCCccchhccChhhHHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++|||+..++....+.+++.+
T Consensus       164 llLDEPt~~LD~~~~~~l~~~L  185 (269)
T PRK13648        164 IILDEATSMLDPDARQNLLDLV  185 (269)
T ss_pred             EEEeCCcccCCHHHHHHHHHHH
Confidence            9999999999998877765543

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.65  E-value=1.5e-15  Score=132.83  Aligned_cols=142  Identities=15%  Similarity=0.210  Sum_probs=96.7

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSF  151 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~  151 (279)
                      ++++++++.|..     ..||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...     ....++|
T Consensus         3 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   81 (242)
T TIGR03411         3 LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT-RPDEGSVLFGGTDLTGLPEHQIARAGIGR   81 (242)
T ss_pred             EEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence            456666666643     349999999999999999999999999999999 89999999999876321     0111222


Q ss_pred             Ccc--------cHHHHHHH--------------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675          152 KAE--------DRVENIRR--------------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       152 ~~~--------~~~~~~~~--------------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      .++        ...+.+..                    ...+...+...++..    .+..+|+++++| .++++++.+
T Consensus        82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~  161 (242)
T TIGR03411        82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD  161 (242)
T ss_pred             eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            111        11111110                    011122222223321    334578888888 899999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHHh
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      |++  +++|||+..++....+.+++.++
T Consensus       162 p~~--lllDEPt~~LD~~~~~~l~~~l~  187 (242)
T TIGR03411       162 PKL--LLLDEPVAGMTDEETEKTAELLK  187 (242)
T ss_pred             CCE--EEecCCccCCCHHHHHHHHHHHH
Confidence            998  99999999999988777655433

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.65  E-value=1.5e-16  Score=170.24  Aligned_cols=145  Identities=17%  Similarity=0.165  Sum_probs=103.0

Q ss_pred             CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.|+|+|++|+|..+       .||++++|+.++|||++|||||||+++|.|++ +|.+|.|++||.++++.    ++.
T Consensus      1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130       1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-ELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred             CCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCEecccCCHHHHHh
Confidence            4679999999999642       28999999999999999999999999999999 89999999999998531    122


Q ss_pred             CCCCCcccH-------H-----------HHHHHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675          148 DLSFKAEDR-------V-----------ENIRRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       148 ~~~~~~~~~-------~-----------~~~~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      .+++.+++.       +           +.+....+.+.   ...  ..|+.    ..+..+|+|++|| .+||++++++
T Consensus      1314 ~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p 1393 (1622)
T PLN03130       1314 VLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393 (1622)
T ss_pred             ccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC
Confidence            222211110       1           11111111111   111  11222    2344689999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHHh
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++  ++|||+++.++....+.+.+.++
T Consensus      1394 ~I--LILDEATSaLD~~Te~~Iq~~I~ 1418 (1622)
T PLN03130       1394 KI--LVLDEATAAVDVRTDALIQKTIR 1418 (1622)
T ss_pred             CE--EEEECCCCCCCHHHHHHHHHHHH
Confidence            88  99999999998877666655544

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=7e-16  Score=138.23  Aligned_cols=140  Identities=19%  Similarity=0.182  Sum_probs=98.9

Q ss_pred             CeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc------ccccC
Q 023675           81 NILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRD  148 (279)
Q Consensus        81 ~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~------~~~~~  148 (279)
                      .+++++++++|..      +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++..      .+...
T Consensus         5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~-~p~~G~i~i~g~~~~~~~~~~~~~~~~   83 (283)
T PRK13636          5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL-KPSSGRILFDGKPIDYSRKGLMKLRES   83 (283)
T ss_pred             eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCccEEEECCEECCCCcchHHHHHhh
Confidence            4788888888852      338999999999999999999999999999999 8999999999988731      11112


Q ss_pred             CCCCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          149 LSFKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       149 ~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      ++|.+++.         .+.+..            ...+...+...++..    ....+|+++++| .++++++.+|++ 
T Consensus        84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l-  162 (283)
T PRK13636         84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV-  162 (283)
T ss_pred             EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence            23222211         111100            011122223333322    344588899888 999999999998 


Q ss_pred             EEEEeCCccchhccChhhHHH
Q 023675          203 EVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~  223 (279)
                       +++|||+..++......+++
T Consensus       163 -LilDEPt~gLD~~~~~~l~~  182 (283)
T PRK13636        163 -LVLDEPTAGLDPMGVSEIMK  182 (283)
T ss_pred             -EEEeCCccCCCHHHHHHHHH
Confidence             99999999999888776544

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=8e-16  Score=137.56  Aligned_cols=141  Identities=16%  Similarity=0.121  Sum_probs=97.0

Q ss_pred             eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675           82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------  144 (279)
Q Consensus        82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------  144 (279)
                      +++++++++|..          +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...       
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~   81 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH-VPTQGSVRVDDTLITSTSKNKDIK   81 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccCHH
Confidence            456777777742          238999999999999999999999999999999 89999999999876421       


Q ss_pred             -cccCCCCCcccH---------HHHHHH-----------HH-HHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhC
Q 023675          145 -LNRDLSFKAEDR---------VENIRR-----------IG-EVAKLFADAGVI-----CIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       145 -~~~~~~~~~~~~---------~~~~~~-----------v~-~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~  196 (279)
                       ....++|.++..         .+.+..           .. .+..++...++.     ..+..+|+++++| .++++++
T Consensus        82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~  161 (280)
T PRK13649         82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA  161 (280)
T ss_pred             HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence             111223222211         111110           00 011122223332     1234588899988 8999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .+|++  ++||||+..++....+.+++.+
T Consensus       162 ~~p~l--llLDEPt~~LD~~~~~~l~~~l  188 (280)
T PRK13649        162 MEPKI--LVLDEPTAGLDPKGRKELMTLF  188 (280)
T ss_pred             cCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence            99998  9999999999998877655543

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=1.1e-15  Score=134.34  Aligned_cols=143  Identities=20%  Similarity=0.171  Sum_probs=97.2

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeecccc----cccC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG----LNRD  148 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~~----~~~~  148 (279)
                      ++++++++.|.+     +.||++.+|++++|+|+||||||||+++|+|.+..    |.+|.|+++|.++...    ....
T Consensus         4 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~   83 (250)
T PRK14247          4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRR   83 (250)
T ss_pred             EEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhcc
Confidence            566777777753     44899999999999999999999999999999832    4699999999876421    1111


Q ss_pred             CCCCcc--------cHHHHHHH--------------HHHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675          149 LSFKAE--------DRVENIRR--------------IGEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       149 ~~~~~~--------~~~~~~~~--------------v~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      ++|.++        ...+.+..              ...+...+...++        ......+|+++++| .++++++.
T Consensus        84 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~  163 (250)
T PRK14247         84 VQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF  163 (250)
T ss_pred             EEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence            221111        11111110              0111222233332        12344688899988 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +|++  +++|||+..++....+.+++.+.
T Consensus       164 ~p~l--llLDEP~~~LD~~~~~~l~~~l~  190 (250)
T PRK14247        164 QPEV--LLADEPTANLDPENTAKIESLFL  190 (250)
T ss_pred             CCCE--EEEcCCCccCCHHHHHHHHHHHH
Confidence            9998  99999999999988877665443

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=8.1e-16  Score=138.29  Aligned_cols=140  Identities=18%  Similarity=0.162  Sum_probs=98.2

Q ss_pred             eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675           82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------  144 (279)
Q Consensus        82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------  144 (279)
                      +++++++++|..          +.||++++|++++|+|+||||||||+++|+|++ .|++|+|.++|.++...       
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~   81 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL-QPTSGTVTIGERVITAGKKNKKLK   81 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECccccccchHH
Confidence            567777777752          238999999999999999999999999999999 89999999999877310       


Q ss_pred             -cccCCCCCcccH---------HHHHHH------------HHHHHHHHHhCCcc-h----hcccCChHHHHH-HHHHHhC
Q 023675          145 -LNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSML  196 (279)
Q Consensus       145 -~~~~~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~-~----i~~~~~~~~~~r-~~ar~l~  196 (279)
                       ....++|.+++.         .+.+..            ...+...+...++. .    .+..+|+++++| .++++++
T Consensus        82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~  161 (290)
T PRK13634         82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA  161 (290)
T ss_pred             HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence             111233332221         111100            01112223333442 1    345588899988 9999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      .+|++  +++|||+..++......+++.
T Consensus       162 ~~P~l--lllDEPt~~LD~~~~~~l~~~  187 (290)
T PRK13634        162 MEPEV--LVLDEPTAGLDPKGRKEMMEM  187 (290)
T ss_pred             cCCCE--EEEECCcccCCHHHHHHHHHH
Confidence            99998  999999999999887765543

>PLN03232 ABC transporter C family member; Provisional

Probab=99.65  E-value=1.4e-16  Score=169.98  Aligned_cols=145  Identities=17%  Similarity=0.150  Sum_probs=102.4

Q ss_pred             CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.|+++|++|+|..+       .||++++|+.++|||+||||||||+++|.|++ +|.+|.|.+||.++.+.    ++.
T Consensus      1232 ~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~-~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232       1232 RGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV-ELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred             CCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCceEEECCEEhhhCCHHHHHh
Confidence            4679999999999532       29999999999999999999999999999999 89999999999998531    111


Q ss_pred             CCCCCccc-------HH-----------HHHHHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675          148 DLSFKAED-------RV-----------ENIRRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       148 ~~~~~~~~-------~~-----------~~~~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      .+++.+++       .+           +.+....+.+.   ...  ..|+.    ..+..+|+|++|| .+||++++++
T Consensus      1311 ~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232       1311 VLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred             hcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            12211111       01           11111111111   111  11222    2345689999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHHh
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++  ++|||+++.++....+.+.+.++
T Consensus      1391 ~I--LILDEATSaLD~~Te~~Iq~~L~ 1415 (1495)
T PLN03232       1391 KI--LVLDEATASVDVRTDSLIQRTIR 1415 (1495)
T ss_pred             CE--EEEECCcccCCHHHHHHHHHHHH
Confidence            88  99999999999877666655544

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=1.5e-15  Score=135.00  Aligned_cols=146  Identities=19%  Similarity=0.223  Sum_probs=99.5

Q ss_pred             CCCCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccc----cCCccEEEEcCeeccc-----
Q 023675           78 KSTNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRH-----  143 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~----~~~~G~i~ldgd~i~~-----  143 (279)
                      ....++++++++.|.++     .||++++|++++|+|+||||||||+++|+|++.    .|++|.|+++|.++..     
T Consensus        18 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   97 (268)
T PRK14248         18 KEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV   97 (268)
T ss_pred             CCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence            33458899999988653     389999999999999999999999999999862    1689999999987632     


Q ss_pred             -ccccCCCCCcc-------cHHHHHHH------------HHH-HHHHHHhCCcc--------hhcccCChHHHHH-HHHH
Q 023675          144 -GLNRDLSFKAE-------DRVENIRR------------IGE-VAKLFADAGVI--------CIACLISPYRKDR-DACR  193 (279)
Q Consensus       144 -~~~~~~~~~~~-------~~~~~~~~------------v~~-~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar  193 (279)
                       .....++|.++       ...+.+..            ..+ +...+...++.        ..+..+|+++++| .+++
T Consensus        98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lar  177 (268)
T PRK14248         98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIAR  177 (268)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHH
Confidence             11111222111       11111110            000 11122222221        1244588899888 9999


Q ss_pred             HhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++.+|++  +++|||+..++....+.+.+.+
T Consensus       178 al~~~p~l--llLDEPt~~LD~~~~~~l~~~l  207 (268)
T PRK14248        178 TLAMKPAV--LLLDEPASALDPISNAKIEELI  207 (268)
T ss_pred             HHhCCCCE--EEEcCCCcccCHHHHHHHHHHH
Confidence            99999998  9999999999988877655543

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.65  E-value=9e-16  Score=136.73  Aligned_cols=142  Identities=20%  Similarity=0.264  Sum_probs=97.1

Q ss_pred             CeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc-cCCCCCc
Q 023675           81 NILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~-~~~~~~~  153 (279)
                      .+++++++++|..      +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++..... ..++|.+
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~i~~v~   84 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV-RLASGKISILGQPTRQALQKNLVAYVP   84 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEhHHhhccceEEEec
Confidence            4778888888852      338999999999999999999999999999999 8999999999987531110 0011111


Q ss_pred             cc----------HHHHH---------------HH-HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          154 ED----------RVENI---------------RR-IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       154 ~~----------~~~~~---------------~~-v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      ++          ....+               .. -......+...++.    ..+..+|+++++| .++++++.+|++ 
T Consensus        85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l-  163 (272)
T PRK15056         85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV-  163 (272)
T ss_pred             cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence            00          00000               00 00111222223332    1344578889888 999999999998 


Q ss_pred             EEEEeCCccchhccChhhHHHHH
Q 023675          203 EVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                       +++|||+..++....+.+.+.+
T Consensus       164 -lllDEPt~~LD~~~~~~l~~~L  185 (272)
T PRK15056        164 -ILLDEPFTGVDVKTEARIISLL  185 (272)
T ss_pred             -EEEeCCCccCCHHHHHHHHHHH
Confidence             9999999999988877655543

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.65  E-value=1.7e-16  Score=155.57  Aligned_cols=144  Identities=13%  Similarity=0.149  Sum_probs=101.1

Q ss_pred             CCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675           80 TNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL  149 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~  149 (279)
                      +.++++|++|+|+++      .||++++|+.++|+|+||||||||+++|+|++ +|.+|.|++||.++.+.    +...+
T Consensus       333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i  411 (585)
T TIGR01192       333 GAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-DPTVGQILIDGIDINTVTRESLRKSI  411 (585)
T ss_pred             CeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-CCCCCEEEECCEEhhhCCHHHHHhhe
Confidence            469999999999742      28999999999999999999999999999999 89999999999887421    11111


Q ss_pred             CCCcc--------------------cHHHHHHHHHH--HHHHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCCCC
Q 023675          150 SFKAE--------------------DRVENIRRIGE--VAKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       150 ~~~~~--------------------~~~~~~~~v~~--~~~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      ++.++                    ...+.......  .......  .|..    ..+..+|+|+++| .++|+++.+|+
T Consensus       412 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~  491 (585)
T TIGR01192       412 ATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP  491 (585)
T ss_pred             EEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            11111                    00111111100  1111111  1221    2344589999999 99999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHHh
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +  +++|||++.++....+.+.+.+.
T Consensus       492 i--lilDEpts~LD~~~~~~i~~~l~  515 (585)
T TIGR01192       492 I--LVLDEATSALDVETEARVKNAID  515 (585)
T ss_pred             E--EEEECCccCCCHHHHHHHHHHHH
Confidence            8  99999999999988777665443

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=1.1e-15  Score=136.35  Aligned_cols=141  Identities=20%  Similarity=0.164  Sum_probs=96.9

Q ss_pred             eEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675           82 ILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS  150 (279)
Q Consensus        82 i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~  150 (279)
                      +++++++++|..      +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...     +...++
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (274)
T PRK13644          2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL-RPQKGKVLVSGIDTGDFSKLQGIRKLVG   80 (274)
T ss_pred             EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEECCccccHHHHHhheE
Confidence            456677777742      338999999999999999999999999999999 89999999999887421     111222


Q ss_pred             CCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          151 FKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       151 ~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                      |.+++.         .+.+..            ...+..++...++..    .+..+|+++++| .++++++.+|++  +
T Consensus        81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l--l  158 (274)
T PRK13644         81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC--L  158 (274)
T ss_pred             EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE--E
Confidence            222211         111100            011112222233322    344578889888 899999999998  9


Q ss_pred             EEeCCccchhccChhhHHHHH
Q 023675          205 FMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++|||+..++......+++.+
T Consensus       159 lLDEPt~gLD~~~~~~l~~~l  179 (274)
T PRK13644        159 IFDEVTSMLDPDSGIAVLERI  179 (274)
T ss_pred             EEeCCcccCCHHHHHHHHHHH
Confidence            999999999988776655443

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.65  E-value=1.1e-15  Score=135.93  Aligned_cols=142  Identities=19%  Similarity=0.244  Sum_probs=97.7

Q ss_pred             CeEEeecceeec--------------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--
Q 023675           81 NILWHKNSVDKR--------------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--  144 (279)
Q Consensus        81 ~i~~~~~~~~~~--------------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--  144 (279)
                      .+++++++++|.              ++.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...  
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~   82 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGELLIDDHPLHFGDY   82 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCch
Confidence            367777777774              2338999999999999999999999999999999 89999999999876421  


Q ss_pred             --cccCCCCCcccH----------HHHHH-------------HHHHHHHHHHhCCcc-h----hcccCChHHHHH-HHHH
Q 023675          145 --LNRDLSFKAEDR----------VENIR-------------RIGEVAKLFADAGVI-C----IACLISPYRKDR-DACR  193 (279)
Q Consensus       145 --~~~~~~~~~~~~----------~~~~~-------------~v~~~~~~~~~~~~~-~----i~~~~~~~~~~r-~~ar  193 (279)
                        ....++|.++..          ...+.             ....+...+...++. .    ....+|+++++| .+++
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar  162 (267)
T PRK15112         83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR  162 (267)
T ss_pred             hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence              111122222110          00000             001122233333431 1    234588899888 8999


Q ss_pred             HhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++.+|++  ++||||+..++....+.+++.+
T Consensus       163 al~~~p~l--llLDEPt~~LD~~~~~~l~~~l  192 (267)
T PRK15112        163 ALILRPKV--IIADEALASLDMSMRSQLINLM  192 (267)
T ss_pred             HHHhCCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence            99999998  9999999999998777655543

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=1.2e-15  Score=135.78  Aligned_cols=142  Identities=16%  Similarity=0.183  Sum_probs=100.0

Q ss_pred             CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675           81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~  149 (279)
                      .+++++++++|..       +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    +...+
T Consensus         7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~i   85 (271)
T PRK13632          7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL-KPQSGEIKIDGITISKENLKEIRKKI   85 (271)
T ss_pred             EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEecCcCCHHHHhcce
Confidence            4788888888842       238999999999999999999999999999999 89999999999887421    12223


Q ss_pred             CCCcccH---------HHHHHH-----------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          150 SFKAEDR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       150 ~~~~~~~---------~~~~~~-----------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      +|.+++.         .+.+..           . ..+..++...++..    ....+|+++++| .++++++.+|++  
T Consensus        86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--  163 (271)
T PRK13632         86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI--  163 (271)
T ss_pred             EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE--
Confidence            3333221         111110           0 00112222333322    234578889888 899999999998  


Q ss_pred             EEEeCCccchhccChhhHHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++||||+..++....+.+++.+
T Consensus       164 llLDEP~~gLD~~~~~~l~~~l  185 (271)
T PRK13632        164 IIFDESTSMLDPKGKREIKKIM  185 (271)
T ss_pred             EEEeCCcccCCHHHHHHHHHHH
Confidence            9999999999998877665543

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=1.2e-15  Score=137.13  Aligned_cols=140  Identities=16%  Similarity=0.130  Sum_probs=96.7

Q ss_pred             eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc--------
Q 023675           82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------  143 (279)
Q Consensus        82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~--------  143 (279)
                      |++++++++|..          +.||++++|++++|+|+||||||||+++|+|++ .|++|.|+++|.++..        
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~   80 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL-QPTEGKVTVGDIVVSSTSKQKEIK   80 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEECccccccccHH
Confidence            567777777752          238999999999999999999999999999999 8999999999988631        


Q ss_pred             ccccCCCCCcccH---------HHHHHH------------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhC
Q 023675          144 GLNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       144 ~~~~~~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      .....++|.++..         .+.+..            ...+...+...++.     .....+|+++++| .++++++
T Consensus        81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~  160 (288)
T PRK13643         81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA  160 (288)
T ss_pred             HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence            0111222222210         111100            01122222223331     2234588899998 9999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      .+|++  ++||||+..++....+.+++.
T Consensus       161 ~~p~i--llLDEPt~gLD~~~~~~l~~~  186 (288)
T PRK13643        161 MEPEV--LVLDEPTAGLDPKARIEMMQL  186 (288)
T ss_pred             hCCCE--EEEECCccCCCHHHHHHHHHH
Confidence            99998  999999999998877665543

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=3.9e-15  Score=133.53  Aligned_cols=147  Identities=19%  Similarity=0.189  Sum_probs=100.8

Q ss_pred             CCCCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc-----
Q 023675           78 KSTNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH-----  143 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~-----  143 (279)
                      ....++++++++.|..     +.+|++.+|++++|+|+||||||||+++|+|++..    |.+|.|+++|.++..     
T Consensus        36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~  115 (285)
T PRK14254         36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP  115 (285)
T ss_pred             CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence            3445889999998864     33899999999999999999999999999999842    689999999987631     


Q ss_pred             -ccccCCCCCcc-------cHHHHHHH-----------HHHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675          144 -GLNRDLSFKAE-------DRVENIRR-----------IGEVAKLFADAGV--------ICIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       144 -~~~~~~~~~~~-------~~~~~~~~-----------v~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l  195 (279)
                       .....++|.++       ...+.+..           ...+...+...++        ......+|+++++| .+++++
T Consensus       116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL  195 (285)
T PRK14254        116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAI  195 (285)
T ss_pred             HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence             01111111111       11111111           0111222222232        11234688889888 999999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +.+|++  ++||||+..++....+.+.+.++
T Consensus       196 ~~~p~l--LLLDEPts~LD~~~~~~l~~~L~  224 (285)
T PRK14254        196 APDPEV--ILMDEPASALDPVATSKIEDLIE  224 (285)
T ss_pred             HcCCCE--EEEeCCCCCCCHHHHHHHHHHHH
Confidence            999998  99999999999988776655443

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=2.2e-15  Score=132.72  Aligned_cols=142  Identities=16%  Similarity=0.178  Sum_probs=97.9

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS  150 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~  150 (279)
                      .++++++++.|.+     ..||++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...     ....++
T Consensus         5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~   83 (255)
T PRK11300          5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY-KPTGGTILLRGQHIEGLPGHQIARMGVV   83 (255)
T ss_pred             eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCcceEEECCEECCCCCHHHHHhcCeE
Confidence            4677888877754     349999999999999999999999999999999 89999999999876321     011111


Q ss_pred             CCcc--------cHHHHHHH---------------------------HHHHHHHHHhCCcch----hcccCChHHHHH-H
Q 023675          151 FKAE--------DRVENIRR---------------------------IGEVAKLFADAGVIC----IACLISPYRKDR-D  190 (279)
Q Consensus       151 ~~~~--------~~~~~~~~---------------------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~  190 (279)
                      |.++        ...+.+..                           .......+...++..    ....+|+++++| .
T Consensus        84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~  163 (255)
T PRK11300         84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE  163 (255)
T ss_pred             EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHH
Confidence            1111        11111110                           011112222333322    234578888888 8


Q ss_pred             HHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       191 ~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++++++.+|++  +++|||+..++....+.+.+.+
T Consensus       164 la~al~~~p~l--lllDEPt~~LD~~~~~~l~~~L  196 (255)
T PRK11300        164 IARCMVTQPEI--LMLDEPAAGLNPKETKELDELI  196 (255)
T ss_pred             HHHHHhcCCCE--EEEcCCccCCCHHHHHHHHHHH
Confidence            99999999998  9999999999988877655543

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=1.4e-15  Score=133.07  Aligned_cols=139  Identities=14%  Similarity=0.221  Sum_probs=94.5

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSF  151 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~  151 (279)
                      ++++++++.|..     +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...     ....++|
T Consensus         4 l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   82 (241)
T PRK10895          4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV-PRDAGNIIIDDEDISLLPLHARARRGIGY   82 (241)
T ss_pred             EEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence            566677777753     449999999999999999999999999999999 89999999999876320     1111111


Q ss_pred             Cccc--------HHHHHHH-------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675          152 KAED--------RVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (279)
Q Consensus       152 ~~~~--------~~~~~~~-------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~  205 (279)
                      .++.        ..+.+..             ......++...++..    ....+|+++++| .++++++.+|++  ++
T Consensus        83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--ll  160 (241)
T PRK10895         83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF--IL  160 (241)
T ss_pred             eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence            1111        0111100             001112222223322    234578888888 899999999998  99


Q ss_pred             EeCCccchhccChhhHHH
Q 023675          206 MDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~  223 (279)
                      +|||+..++......+.+
T Consensus       161 lDEPt~~LD~~~~~~l~~  178 (241)
T PRK10895        161 LDEPFAGVDPISVIDIKR  178 (241)
T ss_pred             EcCCcccCCHHHHHHHHH
Confidence            999999999887765443

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=1.3e-15  Score=134.36  Aligned_cols=141  Identities=18%  Similarity=0.144  Sum_probs=96.0

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK  152 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~  152 (279)
                      +++++++++|.+     +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...    ....++|.
T Consensus         3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   81 (255)
T PRK11231          3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-TPQSGTVFLGDKPISMLSSRQLARRLALL   81 (255)
T ss_pred             EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence            566777777754     348999999999999999999999999999999 89999999999875310    01111111


Q ss_pred             cc--------cHHHHHH----------------HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          153 AE--------DRVENIR----------------RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       153 ~~--------~~~~~~~----------------~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      ++        ...+.+.                ....+...+...++.    .....+|+++++| .++++++.+|++  
T Consensus        82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--  159 (255)
T PRK11231         82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV--  159 (255)
T ss_pred             cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE--
Confidence            11        0011110                000111222222332    2344578888888 999999999998  


Q ss_pred             EEEeCCccchhccChhhHHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++|||+..++....+.+.+.+
T Consensus       160 lllDEP~~~LD~~~~~~l~~~l  181 (255)
T PRK11231        160 VLLDEPTTYLDINHQVELMRLM  181 (255)
T ss_pred             EEEcCCcccCCHHHHHHHHHHH
Confidence            9999999999998877765543

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=1e-15  Score=137.47  Aligned_cols=141  Identities=18%  Similarity=0.179  Sum_probs=97.5

Q ss_pred             eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675           82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------  144 (279)
Q Consensus        82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------  144 (279)
                      ++++++++.|..          +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...       
T Consensus         3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL-KPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECccccccchHH
Confidence            456677776642          238999999999999999999999999999999 89999999999876321       


Q ss_pred             -cccCCCCCcccH---------HHHHHH------------HHHHHHHHHhCCcc-h----hcccCChHHHHH-HHHHHhC
Q 023675          145 -LNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSML  196 (279)
Q Consensus       145 -~~~~~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~-~----i~~~~~~~~~~r-~~ar~l~  196 (279)
                       ....++|.+++.         .+.+..            ...+..++...++. .    ....+|+++++| .++++++
T Consensus        82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~  161 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA  161 (287)
T ss_pred             HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence             111233322221         111110            00112223333442 1    234588899998 9999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .+|++  ++||||+..++....+.+.+.+
T Consensus       162 ~~p~l--LlLDEPt~gLD~~~~~~l~~~l  188 (287)
T PRK13641        162 YEPEI--LCLDEPAAGLDPEGRKEMMQLF  188 (287)
T ss_pred             cCCCE--EEEECCCCCCCHHHHHHHHHHH
Confidence            99998  9999999999988776655443

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.65  E-value=1.6e-15  Score=134.64  Aligned_cols=129  Identities=20%  Similarity=0.213  Sum_probs=89.1

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCCCCCcccH----------
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFKAEDR----------  156 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~~~~~~~~----------  156 (279)
                      +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...       ....++|.++..          
T Consensus        29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv  107 (265)
T TIGR02769        29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTV  107 (265)
T ss_pred             CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCH
Confidence            348999999999999999999999999999999 89999999999876421       111122222110          


Q ss_pred             HHHHH-------------HHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675          157 VENIR-------------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (279)
Q Consensus       157 ~~~~~-------------~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~  217 (279)
                      .+.+.             ....+...+...++.     ..+..+|+++++| .++++++.+|++  ++||||+..++...
T Consensus       108 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~i--llLDEPt~~LD~~~  185 (265)
T TIGR02769       108 RQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKL--IVLDEAVSNLDMVL  185 (265)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHH
Confidence            01000             001112223333432     1334578888888 899999999998  99999999999987


Q ss_pred             hhhHHHHH
Q 023675          218 PKGLYKLA  225 (279)
Q Consensus       218 ~~~l~~~~  225 (279)
                      .+.+++.+
T Consensus       186 ~~~l~~~l  193 (265)
T TIGR02769       186 QAVILELL  193 (265)
T ss_pred             HHHHHHHH
Confidence            66655433

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=1.1e-15  Score=139.49  Aligned_cols=128  Identities=19%  Similarity=0.253  Sum_probs=90.8

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCCCCCcccH----------
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFKAEDR----------  156 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~~~~~~~~----------  156 (279)
                      +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...       +...+++.+++.          
T Consensus        33 ~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~-~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v  111 (327)
T PRK11308         33 GVSFTLERGKTLAVVGESGCGKSTLARLLTMIE-TPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKV  111 (327)
T ss_pred             eeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC-CCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCH
Confidence            449999999999999999999999999999999 78999999999887421       112233322211          


Q ss_pred             HHHHH-------------HHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675          157 VENIR-------------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (279)
Q Consensus       157 ~~~~~-------------~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~  217 (279)
                      ...+.             ....+..++...++.     .....+|+++++| .++++++.+|++  +++|||+..++...
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~l--LilDEPts~LD~~~  189 (327)
T PRK11308        112 GQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDV--VVADEPVSALDVSV  189 (327)
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCE--EEEECCCccCCHHH
Confidence            00000             011122333333332     1344689999999 999999999998  99999999999887


Q ss_pred             hhhHHHH
Q 023675          218 PKGLYKL  224 (279)
Q Consensus       218 ~~~l~~~  224 (279)
                      ...+++.
T Consensus       190 ~~~i~~l  196 (327)
T PRK11308        190 QAQVLNL  196 (327)
T ss_pred             HHHHHHH
Confidence            7765543

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.64  E-value=1.4e-15  Score=135.34  Aligned_cols=144  Identities=19%  Similarity=0.181  Sum_probs=98.0

Q ss_pred             CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------c
Q 023675           80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------G  144 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~  144 (279)
                      ..+++++++++|..     +.||++++|++++|+|+||||||||+++|+|++..    |.+|.|.++|.++..      .
T Consensus        12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~   91 (269)
T PRK14259         12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE   91 (269)
T ss_pred             ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHH
Confidence            45888999888864     34999999999999999999999999999999832    689999999987631      0


Q ss_pred             cccCCCCCccc-------HHHHHHH----------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675          145 LNRDLSFKAED-------RVENIRR----------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       145 ~~~~~~~~~~~-------~~~~~~~----------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      ....++|.+++       ..+.+..          . ......+...++        ......+++++++| .++++++.
T Consensus        92 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~  171 (269)
T PRK14259         92 VRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI  171 (269)
T ss_pred             HhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence            11112222211       1111110          0 001111222221        11234578888888 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHH
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +|++  +++|||+..++......+++.+
T Consensus       172 ~p~l--llLDEPt~gLD~~~~~~l~~~l  197 (269)
T PRK14259        172 EPEV--ILMDEPCSALDPISTLKIEETM  197 (269)
T ss_pred             CCCE--EEEcCCCccCCHHHHHHHHHHH
Confidence            9998  9999999999998877665544

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.64  E-value=2.3e-16  Score=168.61  Aligned_cols=146  Identities=17%  Similarity=0.157  Sum_probs=103.8

Q ss_pred             CCCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cc
Q 023675           78 KSTNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LN  146 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~  146 (279)
                      ..+.|+|+|++|+|..+       .||++++|+.++|||++|||||||+++|.|++ +|.+|.|++||.|+++.    ++
T Consensus      1281 ~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~-~~~~G~I~IdG~dI~~i~~~~LR 1359 (1522)
T TIGR00957      1281 PRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-ESAEGEIIIDGLNIAKIGLHDLR 1359 (1522)
T ss_pred             CCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-cCCCCeEEECCEEccccCHHHHH
Confidence            34689999999999643       28999999999999999999999999999999 89999999999998531    12


Q ss_pred             cCCCCCccc-------HH-----------HHHHHHHHHHHH---HHh--CCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675          147 RDLSFKAED-------RV-----------ENIRRIGEVAKL---FAD--AGVI----CIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       147 ~~~~~~~~~-------~~-----------~~~~~v~~~~~~---~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      ..+++.+++       .+           +.+....+.+.+   ...  .|+.    ..+..+|+|++|| .+||+++++
T Consensus      1360 ~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957      1360 FKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred             hcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence            222211111       01           111111111111   111  1222    2345689999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHHh
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +++  ++|||+++.++....+.+.+.++
T Consensus      1440 ~~I--LiLDEaTSalD~~Te~~Iq~~l~ 1465 (1522)
T TIGR00957      1440 TKI--LVLDEATAAVDLETDNLIQSTIR 1465 (1522)
T ss_pred             CCE--EEEECCcccCCHHHHHHHHHHHH
Confidence            988  99999999999887666665554

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.64  E-value=4.7e-15  Score=127.53  Aligned_cols=143  Identities=17%  Similarity=0.230  Sum_probs=98.2

Q ss_pred             CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCCCCCc
Q 023675           80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKA  153 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~~~~~  153 (279)
                      ..+++++++++|.++     .||++.+|++++|+|+||||||||+++|+|.+ .|++|.|.++|.++... ....++|.+
T Consensus        10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~i~~~~~~~~i~~~~   88 (214)
T PRK13543         10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL-HVESGQIQIDGKTATRGDRSRFMAYLG   88 (214)
T ss_pred             ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCeeEEECCEEccchhhhhceEEee
Confidence            357888888888643     38999999999999999999999999999999 89999999999876421 000111111


Q ss_pred             c--------cHHHHHHH--------H-HHHHHHHHhCCc----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675          154 E--------DRVENIRR--------I-GEVAKLFADAGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (279)
Q Consensus       154 ~--------~~~~~~~~--------v-~~~~~~~~~~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~  211 (279)
                      +        ...+.+..        . ......+...++    ......+++++++| .++++++.+|++  +++|||+.
T Consensus        89 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~  166 (214)
T PRK13543         89 HLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL--WLLDEPYA  166 (214)
T ss_pred             cCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcc
Confidence            1        11111110        0 011112222232    12334578888888 899999999998  99999999


Q ss_pred             chhccChhhHHHHH
Q 023675          212 VCEARDPKGLYKLA  225 (279)
Q Consensus       212 ~l~~R~~~~l~~~~  225 (279)
                      .++....+.+.+.+
T Consensus       167 ~LD~~~~~~l~~~l  180 (214)
T PRK13543        167 NLDLEGITLVNRMI  180 (214)
T ss_pred             cCCHHHHHHHHHHH
Confidence            99988776655443

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.64  E-value=2.9e-16  Score=153.57  Aligned_cols=144  Identities=18%  Similarity=0.191  Sum_probs=100.8

Q ss_pred             CCeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           80 TNILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        80 ~~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      +.|++++++|+|+.        +.+|++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++.+.    +..
T Consensus       336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~p~~G~I~i~g~~i~~~~~~~~~~  414 (576)
T TIGR02204       336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-DPQSGRILLDGVDLRQLDPAELRA  414 (576)
T ss_pred             ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHH
Confidence            46999999999963        228999999999999999999999999999999 89999999999876421    111


Q ss_pred             CCCCCccc--------------------HHHHHHHHHH--HHHHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675          148 DLSFKAED--------------------RVENIRRIGE--VAKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       148 ~~~~~~~~--------------------~~~~~~~v~~--~~~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      .++|.+++                    ..+....+..  +...+..  .|..    ..+..+|+|+++| .++|+++++
T Consensus       415 ~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~  494 (576)
T TIGR02204       415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD  494 (576)
T ss_pred             hceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence            11221111                    1111111110  1111111  1222    2344588999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHHh
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +++  +++|||++.++....+.+++.++
T Consensus       495 ~~i--lilDEpts~lD~~~~~~i~~~l~  520 (576)
T TIGR02204       495 API--LLLDEATSALDAESEQLVQQALE  520 (576)
T ss_pred             CCe--EEEeCcccccCHHHHHHHHHHHH
Confidence            998  99999999999988776655443

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=1.1e-15  Score=137.43  Aligned_cols=142  Identities=17%  Similarity=0.176  Sum_probs=98.9

Q ss_pred             CCeEEeecceeecCC----------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc------
Q 023675           80 TNILWHKNSVDKRDR----------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------  143 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~----------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~------  143 (279)
                      +.+++++++++|..+          .||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++..      
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~   83 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI-ISETGQTIVGDYAIPANLKKIK   83 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEccccccccc
Confidence            568888888888642          28999999999999999999999999999999 8999999999987631      


Q ss_pred             ---ccccCCCCCcccH---------HHHHHH------------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHH
Q 023675          144 ---GLNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACR  193 (279)
Q Consensus       144 ---~~~~~~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar  193 (279)
                         .....++|.++..         .+.+..            ...+..++...++.     .....+|+++++| .+++
T Consensus        84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar  163 (289)
T PRK13645         84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG  163 (289)
T ss_pred             cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence               0111223222211         111100            00111222222331     1234588899988 8999


Q ss_pred             HhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +++.+|++  ++||||+..++....+.+++.
T Consensus       164 al~~~p~l--LlLDEPt~~LD~~~~~~l~~~  192 (289)
T PRK13645        164 IIAMDGNT--LVLDEPTGGLDPKGEEDFINL  192 (289)
T ss_pred             HHHhCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence            99999998  999999999999887765543

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=1.3e-15  Score=136.08  Aligned_cols=140  Identities=16%  Similarity=0.173  Sum_probs=96.1

Q ss_pred             eEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675           82 ILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF  151 (279)
Q Consensus        82 i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~  151 (279)
                      +++++++++|..      +.+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...    ....+++
T Consensus         4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (277)
T PRK13652          4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-KPTSGSVLIRGEPITKENIREVRKFVGL   82 (277)
T ss_pred             EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHhheEE
Confidence            567777777742      238999999999999999999999999999999 89999999999876421    1111222


Q ss_pred             Cccc---------HHHHHHH-----------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675          152 KAED---------RVENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (279)
Q Consensus       152 ~~~~---------~~~~~~~-----------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~  205 (279)
                      .+++         ..+.+..           . ..+...+...++..    .+..+|+++++| .++++++.+|++  ++
T Consensus        83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l--li  160 (277)
T PRK13652         83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV--LV  160 (277)
T ss_pred             EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EE
Confidence            1111         1111110           0 00111222223321    344688889888 899999999998  99


Q ss_pred             EeCCccchhccChhhHHHH
Q 023675          206 MDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~~  224 (279)
                      +|||+..++....+.+++.
T Consensus       161 lDEPt~gLD~~~~~~l~~~  179 (277)
T PRK13652        161 LDEPTAGLDPQGVKELIDF  179 (277)
T ss_pred             EeCCcccCCHHHHHHHHHH
Confidence            9999999998877665543

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.64  E-value=3.3e-16  Score=127.38  Aligned_cols=129  Identities=22%  Similarity=0.219  Sum_probs=90.2

Q ss_pred             eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------c-ccCCCCCcccHH---
Q 023675           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L-NRDLSFKAEDRV---  157 (279)
Q Consensus        89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~-~~~~~~~~~~~~---  157 (279)
                      ++...+.+|.+++|+.++|||+||||||||+-.|+|+- .|++|+|++.|.++.+.       + ...++|.++...   
T Consensus        23 l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd-~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip  101 (228)
T COG4181          23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD-DPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIP  101 (228)
T ss_pred             eeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC-CCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccc
Confidence            34445669999999999999999999999999999987 99999999999988421       1 112233322110   


Q ss_pred             -----HH------------HHHHHHHHHHHHhCC----cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675          158 -----EN------------IRRIGEVAKLFADAG----VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (279)
Q Consensus       158 -----~~------------~~~v~~~~~~~~~~~----~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~  215 (279)
                           ++            .........++..-|    +..+...++++++|| +++|+++..|++  +|-|||+-.++.
T Consensus       102 ~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~v--LfADEPTGNLD~  179 (228)
T COG4181         102 NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDV--LFADEPTGNLDR  179 (228)
T ss_pred             cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCE--EeccCCCCCcch
Confidence                 00            000011111222222    234667789999999 999999999988  999999999987


Q ss_pred             cChhh
Q 023675          216 RDPKG  220 (279)
Q Consensus       216 R~~~~  220 (279)
                      ..-+.
T Consensus       180 ~Tg~~  184 (228)
T COG4181         180 ATGDK  184 (228)
T ss_pred             hHHHH
Confidence            66544

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.64  E-value=2e-15  Score=132.46  Aligned_cols=143  Identities=15%  Similarity=0.165  Sum_probs=97.2

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc--cCCccEEEEcCeecccc----cccCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WRGKLTYILDGDNCRHG----LNRDLS  150 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~--~~~~G~i~ldgd~i~~~----~~~~~~  150 (279)
                      |+++++++.|..     +.||++.+|++++|+|+||||||||+++|+|++.  .|.+|.|.++|.++...    ....++
T Consensus         3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~   82 (246)
T PRK14269          3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG   82 (246)
T ss_pred             eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEE
Confidence            456777777754     3389999999999999999999999999999973  36899999999887421    111122


Q ss_pred             CCccc-------HHHHHHH--------------HHHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHhCCCCC
Q 023675          151 FKAED-------RVENIRR--------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       151 ~~~~~-------~~~~~~~--------------v~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      |.+++       ..+.+..              ...+...+...++.        .....+++++++| .++++++.+|+
T Consensus        83 ~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  162 (246)
T PRK14269         83 MVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPK  162 (246)
T ss_pred             EEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            21111       1111100              00112223333331        1234588899988 89999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHHh
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +  ++||||+..++......+.+.+.
T Consensus       163 l--llLDEP~~~LD~~~~~~l~~~l~  186 (246)
T PRK14269        163 L--LLLDEPTSALDPISSGVIEELLK  186 (246)
T ss_pred             E--EEEcCCcccCCHHHHHHHHHHHH
Confidence            8  99999999999887776655443

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.64  E-value=4.3e-15  Score=126.14  Aligned_cols=140  Identities=18%  Similarity=0.199  Sum_probs=93.6

Q ss_pred             EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCcc
Q 023675           83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE  154 (279)
Q Consensus        83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~  154 (279)
                      +++++++.|.     ++.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...   ....++|.++
T Consensus         2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q   80 (198)
T TIGR01189         2 AARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL-RPDSGEVRWNGTALAEQRDEPHRNILYLGH   80 (198)
T ss_pred             EEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccchHHhhhheEEecc
Confidence            3455555554     4559999999999999999999999999999999 89999999999876321   0011111111


Q ss_pred             --------cHHHHHHHH--------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccch
Q 023675          155 --------DRVENIRRI--------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (279)
Q Consensus       155 --------~~~~~~~~v--------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l  213 (279)
                              ...+.+...        ..+...+...++..    ....+|+++++| .++++++.+|++  +++|||++.+
T Consensus        81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~L  158 (198)
T TIGR01189        81 LPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPL--WILDEPTTAL  158 (198)
T ss_pred             CcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCC
Confidence                    111111110        01122222223321    234578888888 899999999998  9999999999


Q ss_pred             hccChhhHHHHH
Q 023675          214 EARDPKGLYKLA  225 (279)
Q Consensus       214 ~~R~~~~l~~~~  225 (279)
                      +....+.+.+.+
T Consensus       159 D~~~~~~l~~~l  170 (198)
T TIGR01189       159 DKAGVALLAGLL  170 (198)
T ss_pred             CHHHHHHHHHHH
Confidence            987766655443

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.64  E-value=1.2e-15  Score=139.40  Aligned_cols=128  Identities=20%  Similarity=0.211  Sum_probs=89.7

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCCCCCcccH----------
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFKAEDR----------  156 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~~~~~~~~----------  156 (279)
                      +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...       +...++|.+++.          
T Consensus        39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv  117 (331)
T PRK15079         39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLV-KATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTI  117 (331)
T ss_pred             eEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCH
Confidence            449999999999999999999999999999999 89999999999987421       111222222210          


Q ss_pred             HHHHH-------------HH-HHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675          157 VENIR-------------RI-GEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (279)
Q Consensus       157 ~~~~~-------------~v-~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R  216 (279)
                      .+++.             .. ..+..++...++.     .....+|+++++| .++++++.+|++  +++|||+..|+..
T Consensus       118 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l--lilDEPts~LD~~  195 (331)
T PRK15079        118 GEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKL--IICDEPVSALDVS  195 (331)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCCccCCHH
Confidence            11110             00 0111223333331     2344589999999 999999999998  9999999999988


Q ss_pred             ChhhHHHH
Q 023675          217 DPKGLYKL  224 (279)
Q Consensus       217 ~~~~l~~~  224 (279)
                      ....+++.
T Consensus       196 ~~~~i~~l  203 (331)
T PRK15079        196 IQAQVVNL  203 (331)
T ss_pred             HHHHHHHH
Confidence            87765543

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.64  E-value=1.6e-15  Score=133.61  Aligned_cols=143  Identities=20%  Similarity=0.170  Sum_probs=97.7

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-----CccEEEEcCeeccc------c
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH------G  144 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-----~~G~i~ldgd~i~~------~  144 (279)
                      .++++++++.|..     +.||++++|++++|+|+||||||||+++|+|++ .|     .+|.|+++|.++..      .
T Consensus         7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~~~~~~G~i~~~g~~i~~~~~~~~~   85 (254)
T PRK14273          7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN-DLVEGIKIEGNVIYEGKNIYSNNFDILE   85 (254)
T ss_pred             eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc-cCCcCCCCceEEEECCEecccccccHHH
Confidence            5788888888864     349999999999999999999999999999999 54     58999999987631      1


Q ss_pred             cccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675          145 LNRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       145 ~~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ....++|.+++       ..+.+..            . ..+...+...++        ......+|+++++| .+++++
T Consensus        86 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral  165 (254)
T PRK14273         86 LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL  165 (254)
T ss_pred             HhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence            11112222211       1111100            0 011111122222        11244588899988 999999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +.+|++  +++|||+..++......+++.+.
T Consensus       166 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~  194 (254)
T PRK14273        166 AIEPNV--ILMDEPTSALDPISTGKIEELII  194 (254)
T ss_pred             HcCCCE--EEEeCCCcccCHHHHHHHHHHHH
Confidence            999998  99999999999988777655443

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=1.9e-15  Score=134.92  Aligned_cols=141  Identities=16%  Similarity=0.184  Sum_probs=97.2

Q ss_pred             eEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------cccCC
Q 023675           82 ILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDL  149 (279)
Q Consensus        82 i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------~~~~~  149 (279)
                      ++++++++.|..      +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...      ....+
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i   80 (275)
T PRK13639          2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL-KPTSGEVLIKGEPIKYDKKSLLEVRKTV   80 (275)
T ss_pred             EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEECccccchHHHHHhhe
Confidence            456677777742      338999999999999999999999999999999 89999999999887311      11122


Q ss_pred             CCCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          150 SFKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       150 ~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      +|.+++.         .+.+..            ...+..++...++..    ....+|+++++| .++++++.+|++  
T Consensus        81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l--  158 (275)
T PRK13639         81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI--  158 (275)
T ss_pred             EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence            3322221         111100            011222223333322    234578888888 899999999998  


Q ss_pred             EEEeCCccchhccChhhHHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++|||+..++......+.+.+
T Consensus       159 lllDEPt~gLD~~~~~~l~~~l  180 (275)
T PRK13639        159 IVLDEPTSGLDPMGASQIMKLL  180 (275)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHH
Confidence            9999999999998877655443

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=1.1e-15  Score=138.41  Aligned_cols=140  Identities=19%  Similarity=0.133  Sum_probs=97.1

Q ss_pred             eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc--------
Q 023675           82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------  143 (279)
Q Consensus        82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~--------  143 (279)
                      |++++++++|.+          +.||++.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++..        
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~   81 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL-LPDTGTIEWIFKDEKNKKKTKEKE   81 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEEeceeccccccccccc
Confidence            567777777753          239999999999999999999999999999999 8999999999765410        


Q ss_pred             --------------------ccccCCCCCccc---------HHHHHH------------HHHHHHHHHHhCCcc-h----
Q 023675          144 --------------------GLNRDLSFKAED---------RVENIR------------RIGEVAKLFADAGVI-C----  177 (279)
Q Consensus       144 --------------------~~~~~~~~~~~~---------~~~~~~------------~v~~~~~~~~~~~~~-~----  177 (279)
                                          .....++|.+++         ..+.+.            ....+...+...++. .    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~  161 (305)
T PRK13651         82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR  161 (305)
T ss_pred             ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence                                011122332221         011110            001122233333442 1    


Q ss_pred             hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          178 IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       178 i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ....+|+++++| .++++++.+|++  +++|||+..++......+++.
T Consensus       162 ~~~~LSgGqkqrvalA~aL~~~P~l--LlLDEPt~~LD~~~~~~l~~~  207 (305)
T PRK13651        162 SPFELSGGQKRRVALAGILAMEPDF--LVFDEPTAGLDPQGVKEILEI  207 (305)
T ss_pred             ChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCCCCCHHHHHHHHHH
Confidence            344588899998 999999999998  999999999998877665543

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.64  E-value=1.2e-15  Score=134.43  Aligned_cols=141  Identities=21%  Similarity=0.142  Sum_probs=96.7

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-----cccc------
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-----CRHG------  144 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-----i~~~------  144 (279)
                      .++++++++.|..     +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.+     +...      
T Consensus         3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (253)
T TIGR02323         3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL-APDHGTATYIMRSGAELELYQLSEAERR   81 (253)
T ss_pred             eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEEecccccccccccCCHHHHH
Confidence            3677788777753     349999999999999999999999999999999 8999999999876     3210      


Q ss_pred             --cccCCCCCcccH----------HHHH-------------HHHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHH
Q 023675          145 --LNRDLSFKAEDR----------VENI-------------RRIGEVAKLFADAGVI-----CIACLISPYRKDR-DACR  193 (279)
Q Consensus       145 --~~~~~~~~~~~~----------~~~~-------------~~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar  193 (279)
                        ....+++.+++.          ...+             .....+...+...++.     ..+..+|+++++| .+++
T Consensus        82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar  161 (253)
T TIGR02323        82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR  161 (253)
T ss_pred             HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence              011122211110          0000             0001112223333332     1334588899888 9999


Q ss_pred             HhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +++.+|++  +++|||++.++....+.+++.
T Consensus       162 al~~~p~v--lllDEP~~~LD~~~~~~l~~~  190 (253)
T TIGR02323       162 NLVTRPRL--VFMDEPTGGLDVSVQARLLDL  190 (253)
T ss_pred             HHhcCCCE--EEEcCCCccCCHHHHHHHHHH
Confidence            99999998  999999999998887765543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.64  E-value=3.2e-15  Score=131.72  Aligned_cols=142  Identities=18%  Similarity=0.145  Sum_probs=94.6

Q ss_pred             CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc-
Q 023675           81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-  154 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~-  154 (279)
                      .+++++++++|.++     .+|++++|++++|+|+||||||||+++|+|++ .|.+|.|.+++......+.....+... 
T Consensus         4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~~~~~i~~v~q~~~~~~~l   82 (251)
T PRK09544          4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV-APDEGVIKRNGKLRIGYVPQKLYLDTTL   82 (251)
T ss_pred             EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCccCEEEecccccccccc
Confidence            36777888877643     38999999999999999999999999999999 899999999874210000111011000 


Q ss_pred             --cHHHHHHH-----HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675          155 --DRVENIRR-----IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (279)
Q Consensus       155 --~~~~~~~~-----v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~  222 (279)
                        ........     ...+...+...++..    ....+|+++++| .++++++.+|++  +++|||+..++......++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l--llLDEPt~~LD~~~~~~l~  160 (251)
T PRK09544         83 PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQL--LVLDEPTQGVDVNGQVALY  160 (251)
T ss_pred             ChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHH
Confidence              01111000     011122222233322    344578888888 899999999998  9999999999988777655


Q ss_pred             HHH
Q 023675          223 KLA  225 (279)
Q Consensus       223 ~~~  225 (279)
                      +.+
T Consensus       161 ~~L  163 (251)
T PRK09544        161 DLI  163 (251)
T ss_pred             HHH
Confidence            443

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.64  E-value=2.7e-15  Score=129.31  Aligned_cols=143  Identities=23%  Similarity=0.261  Sum_probs=96.4

Q ss_pred             CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675           81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~  149 (279)
                      .++++++++.|..       +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...    ....+
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i   80 (220)
T cd03245           2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-KPTSGSVLLDGTDIRQLDPADLRRNI   80 (220)
T ss_pred             eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            4667777777753       238999999999999999999999999999999 89999999999875310    00111


Q ss_pred             CCCccc-------HHHHHHH------HHHHHHHHHhCCcch---------------hcccCChHHHHH-HHHHHhCCCCC
Q 023675          150 SFKAED-------RVENIRR------IGEVAKLFADAGVIC---------------IACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       150 ~~~~~~-------~~~~~~~------v~~~~~~~~~~~~~~---------------i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      +|.+++       ..+.+..      -..+...+...++..               ....+|+++++| .++++++.+|+
T Consensus        81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~  160 (220)
T cd03245          81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP  160 (220)
T ss_pred             EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence            111111       1111100      000111111111111               124688899888 89999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHHh
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +  +++|||+..++......+++.+.
T Consensus       161 l--lllDEPt~~LD~~~~~~l~~~l~  184 (220)
T cd03245         161 I--LLLDEPTSAMDMNSEERLKERLR  184 (220)
T ss_pred             E--EEEeCccccCCHHHHHHHHHHHH
Confidence            8  99999999999998877766554

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=4.4e-15  Score=129.15  Aligned_cols=141  Identities=19%  Similarity=0.230  Sum_probs=96.3

Q ss_pred             eEEeecceeecC---CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc--
Q 023675           82 ILWHKNSVDKRD---RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE--  154 (279)
Q Consensus        82 i~~~~~~~~~~~---~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~--  154 (279)
                      +++++++++|..   +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...  ....++|.++  
T Consensus         2 l~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~   80 (232)
T PRK10771          2 LKLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL-TPASGSLTLNGQDHTTTPPSRRPVSMLFQEN   80 (232)
T ss_pred             eEEEEEEEEECCccceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCeecCcCChhhccEEEEeccc
Confidence            456777777753   459999999999999999999999999999999 89999999999876321  0011111111  


Q ss_pred             ------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675          155 ------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (279)
Q Consensus       155 ------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~  211 (279)
                            ...+.+..            -..+..++...++..    ....+|+++++| .++++++.+|++  +++|||+.
T Consensus        81 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLDEP~~  158 (232)
T PRK10771         81 NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPI--LLLDEPFS  158 (232)
T ss_pred             ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCcc
Confidence                  11111100            001122222233322    334588888888 899999999998  99999999


Q ss_pred             chhccChhhHHHHH
Q 023675          212 VCEARDPKGLYKLA  225 (279)
Q Consensus       212 ~l~~R~~~~l~~~~  225 (279)
                      .++....+.+.+.+
T Consensus       159 gLD~~~~~~~~~~l  172 (232)
T PRK10771        159 ALDPALRQEMLTLV  172 (232)
T ss_pred             cCCHHHHHHHHHHH
Confidence            99998877655433

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=3.6e-15  Score=132.32  Aligned_cols=141  Identities=17%  Similarity=0.153  Sum_probs=97.2

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF  151 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~  151 (279)
                      .++++++++.|..     +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...    ....++|
T Consensus        11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~   89 (265)
T PRK10575         11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ-PPSEGEILLDAQPLESWSSKAFARKVAY   89 (265)
T ss_pred             eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCEehhhCCHHHHhhheEE
Confidence            4778888888853     349999999999999999999999999999999 89999999999876311    0011111


Q ss_pred             Ccc--------cHHHHHH----------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          152 KAE--------DRVENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       152 ~~~--------~~~~~~~----------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      .++        ...+.+.                ....+...+...++..    ....+|+++++| .++++++.+|++ 
T Consensus        90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l-  168 (265)
T PRK10575         90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC-  168 (265)
T ss_pred             eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence            111        1111110                0011122222223322    234578889888 999999999998 


Q ss_pred             EEEEeCCccchhccChhhHHHH
Q 023675          203 EVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                       ++||||+..++....+.+.+.
T Consensus       169 -llLDEPt~~LD~~~~~~~~~~  189 (265)
T PRK10575        169 -LLLDEPTSALDIAHQVDVLAL  189 (265)
T ss_pred             -EEEcCCcccCCHHHHHHHHHH
Confidence             999999999999887765543

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.64  E-value=1.2e-15  Score=140.79  Aligned_cols=131  Identities=21%  Similarity=0.241  Sum_probs=92.6

Q ss_pred             cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c----ccCCCCCcc--------c
Q 023675           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L----NRDLSFKAE--------D  155 (279)
Q Consensus        92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~----~~~~~~~~~--------~  155 (279)
                      .++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    +    ...++|.++        .
T Consensus         9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~-~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T   87 (363)
T TIGR01186         9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI-EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT   87 (363)
T ss_pred             EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence            34568899999999999999999999999999999 89999999999887521    1    112222221        1


Q ss_pred             HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675          156 RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       156 ~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~  218 (279)
                      ..+++..            ...+..++...++..    ....+|+++++| .++|+++.+|++  +++|||+..++....
T Consensus        88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i--LLlDEP~saLD~~~r  165 (363)
T TIGR01186        88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI--LLMDEAFSALDPLIR  165 (363)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHH
Confidence            1111110            011222233333322    344688999999 899999999998  999999999999887


Q ss_pred             hhHHHHH
Q 023675          219 KGLYKLA  225 (279)
Q Consensus       219 ~~l~~~~  225 (279)
                      +.+++.+
T Consensus       166 ~~l~~~l  172 (363)
T TIGR01186       166 DSMQDEL  172 (363)
T ss_pred             HHHHHHH
Confidence            7766543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.64  E-value=1.1e-15  Score=128.82  Aligned_cols=130  Identities=17%  Similarity=0.213  Sum_probs=89.7

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc------ccccCCCCCccc---------HH
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFKAED---------RV  157 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~------~~~~~~~~~~~~---------~~  157 (279)
                      ++.||++++|++++|+|+||||||||+++|+|.+ .|++|.|+++|.++..      .....++|.+++         ..
T Consensus         9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~   87 (190)
T TIGR01166         9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL-RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVD   87 (190)
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHH
Confidence            4568999999999999999999999999999999 8999999999987631      011112222211         11


Q ss_pred             HHHHH------------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675          158 ENIRR------------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       158 ~~~~~------------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      +.+..            ...+...+...++.    .....+|+++++| .++++++.+|++  +++|||+..++....+.
T Consensus        88 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~LD~~~~~~  165 (190)
T TIGR01166        88 QDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDV--LLLDEPTAGLDPAGREQ  165 (190)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccCCHHHHHH
Confidence            11100            00111222222322    1344578888888 899999999998  99999999999988777


Q ss_pred             HHHHH
Q 023675          221 LYKLA  225 (279)
Q Consensus       221 l~~~~  225 (279)
                      +.+.+
T Consensus       166 ~~~~l  170 (190)
T TIGR01166       166 MLAIL  170 (190)
T ss_pred             HHHHH
Confidence            65543

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=1.8e-15  Score=138.08  Aligned_cols=141  Identities=20%  Similarity=0.227  Sum_probs=96.9

Q ss_pred             eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc---CCccEEEEcCeecccc-----
Q 023675           82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHG-----  144 (279)
Q Consensus        82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~---~~~G~i~ldgd~i~~~-----  144 (279)
                      ++++++++.|..         +.||++++|++++|+|+||||||||+++|+|++..   +.+|.|+++|.++...     
T Consensus         4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~   83 (326)
T PRK11022          4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER   83 (326)
T ss_pred             EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence            456666666543         44999999999999999999999999999999842   4789999999987421     


Q ss_pred             ---cccCCCCCcccH--------------HHHHH---------HHHHHHHHHHhCCcc-------hhcccCChHHHHH-H
Q 023675          145 ---LNRDLSFKAEDR--------------VENIR---------RIGEVAKLFADAGVI-------CIACLISPYRKDR-D  190 (279)
Q Consensus       145 ---~~~~~~~~~~~~--------------~~~~~---------~v~~~~~~~~~~~~~-------~i~~~~~~~~~~r-~  190 (279)
                         ....+++.+++.              .+.+.         ....+..++...++.       .....+|+++++| .
T Consensus        84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~  163 (326)
T PRK11022         84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM  163 (326)
T ss_pred             HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH
Confidence               011222222211              01110         001122333444442       1344689999999 9


Q ss_pred             HHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       191 ~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++++++.+|++  +++|||+..++......+++.
T Consensus       164 iArAL~~~P~l--lilDEPts~LD~~~~~~il~l  195 (326)
T PRK11022        164 IAMAIACRPKL--LIADEPTTALDVTIQAQIIEL  195 (326)
T ss_pred             HHHHHHhCCCE--EEEeCCCCCCCHHHHHHHHHH
Confidence            99999999998  999999999999887765543

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.63  E-value=1.6e-15  Score=130.95  Aligned_cols=141  Identities=18%  Similarity=0.211  Sum_probs=94.8

Q ss_pred             eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------c
Q 023675           82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L  145 (279)
Q Consensus        82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~  145 (279)
                      ++++++++.|.         +..||++++|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++...       .
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~   80 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-SVQEGSLKVLGQELYGASEKELVQL   80 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEhHhcCHhHHHHH
Confidence            34555555553         2348999999999999999999999999999999 89999999999877321       1


Q ss_pred             ccCCCCCcccH--------HHHHH-------------HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675          146 NRDLSFKAEDR--------VENIR-------------RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       146 ~~~~~~~~~~~--------~~~~~-------------~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      ...+++.+++.        .+.+.             ....+...+...++.    .....+++++++| .++++++.+|
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p  160 (220)
T TIGR02982        81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP  160 (220)
T ss_pred             HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            11122211110        01000             001122222223332    1334578888888 8999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHH
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++  +++|||+..++....+.+++.+
T Consensus       161 ~i--lllDEP~~~LD~~~~~~l~~~l  184 (220)
T TIGR02982       161 KL--VLADEPTAALDSKSGRDVVELM  184 (220)
T ss_pred             CE--EEEeCCCCcCCHHHHHHHHHHH
Confidence            98  9999999999998877655543

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.63  E-value=4.1e-15  Score=127.12  Aligned_cols=141  Identities=21%  Similarity=0.134  Sum_probs=99.1

Q ss_pred             CCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675           80 TNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD  148 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~  148 (279)
                      +.+++++++++|..       +.+|.+++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...    ....
T Consensus         5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~   83 (207)
T cd03369           5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-EAEEGKIEIDGIDISTIPLEDLRSS   83 (207)
T ss_pred             CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEhHHCCHHHHHhh
Confidence            45788888888863       238999999999999999999999999999999 89999999999876311    1111


Q ss_pred             CCCCccc-------HHHHHHH-----HHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675          149 LSFKAED-------RVENIRR-----IGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (279)
Q Consensus       149 ~~~~~~~-------~~~~~~~-----v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~  215 (279)
                      ++|.+++       ..+.+..     ..++...+.   .......+++++++| .++++++.+|++  +++|||+..++.
T Consensus        84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~---~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEP~~~LD~  158 (207)
T cd03369          84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR---VSEGGLNLSQGQRQLLCLARALLKRPRV--LVLDEATASIDY  158 (207)
T ss_pred             EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh---ccCCCCcCCHHHHHHHHHHHHHhhCCCE--EEEeCCcccCCH
Confidence            2222211       1111100     001111111   222345688888888 999999999998  999999999999


Q ss_pred             cChhhHHHHHh
Q 023675          216 RDPKGLYKLAR  226 (279)
Q Consensus       216 R~~~~l~~~~~  226 (279)
                      ...+.+++.++
T Consensus       159 ~~~~~l~~~l~  169 (207)
T cd03369         159 ATDALIQKTIR  169 (207)
T ss_pred             HHHHHHHHHHH
Confidence            88777666554

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.63  E-value=1.2e-15  Score=132.76  Aligned_cols=141  Identities=21%  Similarity=0.211  Sum_probs=93.7

Q ss_pred             EEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675           83 LWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK  152 (279)
Q Consensus        83 ~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~  152 (279)
                      ++++++++|..      +.+|++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...    ....++|.
T Consensus         2 ~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~   80 (236)
T cd03253           2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY-DVSSGSILIDGQDIREVTLDSLRRAIGVV   80 (236)
T ss_pred             EEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence            45666666642      338999999999999999999999999999999 89999999999876321    01111111


Q ss_pred             ccc-------HHHHHH---------HHHH------HHHHHHhC--Cc----chhcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          153 AED-------RVENIR---------RIGE------VAKLFADA--GV----ICIACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       153 ~~~-------~~~~~~---------~v~~------~~~~~~~~--~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      +++       ..+.+.         .+..      +...+...  +.    ......+|+++++| .++++++.+|++  
T Consensus        81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l--  158 (236)
T cd03253          81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI--  158 (236)
T ss_pred             CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE--
Confidence            111       001000         0000      00010100  11    01134678888888 999999999998  


Q ss_pred             EEEeCCccchhccChhhHHHHHh
Q 023675          204 VFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +++|||++.++....+.+++.+.
T Consensus       159 lllDEP~~~LD~~~~~~l~~~l~  181 (236)
T cd03253         159 LLLDEATSALDTHTEREIQAALR  181 (236)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHH
Confidence            99999999999988777665543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=2.1e-15  Score=132.84  Aligned_cols=142  Identities=19%  Similarity=0.135  Sum_probs=96.2

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-----CccEEEEcCeeccc------c
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH------G  144 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-----~~G~i~ldgd~i~~------~  144 (279)
                      .++++++++.|..     +.||++.+|++++|+|+||||||||+++|+|.+ .|     .+|.|+++|.++..      .
T Consensus         4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~~~~~~G~i~~~g~~i~~~~~~~~~   82 (253)
T PRK14267          4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL-ELNEEARVEGEVRLFGRNIYSPDVDPIE   82 (253)
T ss_pred             eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CcccCCCCceEEEECCEEccccccChHH
Confidence            3667777777754     339999999999999999999999999999998 55     59999999987631      0


Q ss_pred             cccCCCCCccc--------HHHHHHH-------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHH
Q 023675          145 LNRDLSFKAED--------RVENIRR-------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACR  193 (279)
Q Consensus       145 ~~~~~~~~~~~--------~~~~~~~-------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar  193 (279)
                      ....++|.++.        ..+.+..             . ..+...+...++        ......+|+++++| .+++
T Consensus        83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar  162 (253)
T PRK14267         83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR  162 (253)
T ss_pred             HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence            11112221111        1111110             0 011222222232        11344578889888 8999


Q ss_pred             HhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++.+|++  +++|||+..++....+.+++.+
T Consensus       163 al~~~p~l--lllDEP~~~LD~~~~~~l~~~l  192 (253)
T PRK14267        163 ALAMKPKI--LLMDEPTANIDPVGTAKIEELL  192 (253)
T ss_pred             HHhcCCCE--EEEcCCCccCCHHHHHHHHHHH
Confidence            99999988  9999999999988777655543

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.63  E-value=4e-15  Score=129.70  Aligned_cols=141  Identities=20%  Similarity=0.269  Sum_probs=94.0

Q ss_pred             EEeecceeec-------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675           83 LWHKNSVDKR-------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF  151 (279)
Q Consensus        83 ~~~~~~~~~~-------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~  151 (279)
                      +++++++.|.       ++.+|++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    ....++|
T Consensus         2 ~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (237)
T cd03252           2 TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY-VPENGRVLVDGHDLALADPAWLRRQVGV   80 (237)
T ss_pred             EEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence            4556666664       2348999999999999999999999999999999 89999999999876310    0111111


Q ss_pred             CcccH-------HHHH---------HHHHHHH------HHHHhC--Cc----chhcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          152 KAEDR-------VENI---------RRIGEVA------KLFADA--GV----ICIACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       152 ~~~~~-------~~~~---------~~v~~~~------~~~~~~--~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      .++..       .+.+         ..+.+..      ..+...  +.    ...+..+|+++++| .++++++.+|++ 
T Consensus        81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l-  159 (237)
T cd03252          81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI-  159 (237)
T ss_pred             EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE-
Confidence            11110       0000         0011000      111110  11    11235688899988 899999999998 


Q ss_pred             EEEEeCCccchhccChhhHHHHHh
Q 023675          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                       +++|||+..++......+++.+.
T Consensus       160 -lllDEP~~~LD~~~~~~l~~~l~  182 (237)
T cd03252         160 -LIFDEATSALDYESEHAIMRNMH  182 (237)
T ss_pred             -EEEeCCcccCCHHHHHHHHHHHH
Confidence             99999999999988877665544

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1.9e-15  Score=133.59  Aligned_cols=143  Identities=20%  Similarity=0.189  Sum_probs=95.8

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------cc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GL  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~~  145 (279)
                      .+++++++++|..     +.||++.+|++++|+|+||||||||+++|+|.+..    |.+|.|.++|.++..      ..
T Consensus         4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~   83 (258)
T PRK14241          4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV   83 (258)
T ss_pred             cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence            4677888777754     34999999999999999999999999999999832    269999999987621      01


Q ss_pred             ccCCCCCcc--------cHHHHHHH------------HH-HHHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675          146 NRDLSFKAE--------DRVENIRR------------IG-EVAKLFADAGV--------ICIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       146 ~~~~~~~~~--------~~~~~~~~------------v~-~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ...++|.++        ...+.+..            .. .+..++...++        ...+..+|+++++| .+++++
T Consensus        84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  163 (258)
T PRK14241         84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI  163 (258)
T ss_pred             hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            111221111        11111110            00 11112222222        12345688899888 999999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +.+|++  +++|||+..++......+.+.+
T Consensus       164 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l  191 (258)
T PRK14241        164 AVEPDV--LLMDEPCSALDPISTLAIEDLI  191 (258)
T ss_pred             hcCCCE--EEEcCCCccCCHHHHHHHHHHH
Confidence            999998  9999999999988776655433

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.63  E-value=2.3e-15  Score=133.60  Aligned_cols=143  Identities=20%  Similarity=0.211  Sum_probs=98.2

Q ss_pred             CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCC
Q 023675           80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLS  150 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~  150 (279)
                      ..+++++++++|.+     +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...    ....++
T Consensus         6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~   84 (265)
T PRK10253          6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM-TPAHGHVWLDGEHIQHYASKEVARRIG   84 (265)
T ss_pred             cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEEhhhCCHHHHhhheE
Confidence            35677888887764     349999999999999999999999999999999 89999999999876321    011111


Q ss_pred             CCccc--------HHHHHH----------------HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCc
Q 023675          151 FKAED--------RVENIR----------------RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDF  201 (279)
Q Consensus       151 ~~~~~--------~~~~~~----------------~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~  201 (279)
                      |.+++        ..+.+.                ....+...+...++.    ..+..+|+++++| .++++++.+|++
T Consensus        85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l  164 (265)
T PRK10253         85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAI  164 (265)
T ss_pred             EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCE
Confidence            11110        001100                000111122222332    2345688888888 899999999998


Q ss_pred             cEEEEeCCccchhccChhhHHHHH
Q 023675          202 IEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       202 i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                        +++|||+..++....+.+++.+
T Consensus       165 --lllDEPt~gLD~~~~~~l~~~L  186 (265)
T PRK10253        165 --MLLDEPTTWLDISHQIDLLELL  186 (265)
T ss_pred             --EEEeCccccCCHHHHHHHHHHH
Confidence              9999999999988877765543

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.63  E-value=2.1e-15  Score=133.00  Aligned_cols=142  Identities=20%  Similarity=0.175  Sum_probs=96.7

Q ss_pred             CeEEeecceeec----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC----CccEEEEcCeecccc--cccCCC
Q 023675           81 NILWHKNSVDKR----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHG--LNRDLS  150 (279)
Q Consensus        81 ~i~~~~~~~~~~----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~----~~G~i~ldgd~i~~~--~~~~~~  150 (279)
                      .+++++++++|.    .+.||++.+|++++|+|+||||||||+++|+|.+ .|    ++|.|+++|.++...  ....++
T Consensus         4 ~l~~~~l~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~~~~~G~i~~~g~~i~~~~~~~~~i~   82 (254)
T PRK10418          4 QIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL-PAGVRQTAGRVLLDGKPVAPCALRGRKIA   82 (254)
T ss_pred             EEEEeCeEEEeccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCcCCEEEECCeeccccccccceEE
Confidence            467788887773    2348999999999999999999999999999999 67    899999999876311  001111


Q ss_pred             CCcccH----------HHHHH----------HHHHHHHHHHhCCcch-------hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          151 FKAEDR----------VENIR----------RIGEVAKLFADAGVIC-------IACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       151 ~~~~~~----------~~~~~----------~v~~~~~~~~~~~~~~-------i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      |.+++.          .....          ....+...+...++..       ....+|+++++| .++++++.+|++ 
T Consensus        83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l-  161 (254)
T PRK10418         83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF-  161 (254)
T ss_pred             EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE-
Confidence            111110          00000          0011222233333321       234578888888 999999999998 


Q ss_pred             EEEEeCCccchhccChhhHHHHH
Q 023675          203 EVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                       ++||||++.++......+++.+
T Consensus       162 -LlLDEPt~~LD~~~~~~l~~~L  183 (254)
T PRK10418        162 -IIADEPTTDLDVVAQARILDLL  183 (254)
T ss_pred             -EEEeCCCcccCHHHHHHHHHHH
Confidence             9999999999988776655443

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.63  E-value=2.8e-15  Score=130.86  Aligned_cols=141  Identities=21%  Similarity=0.206  Sum_probs=95.8

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc-
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE-  154 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~-  154 (279)
                      +++++++.|..     +.||++.+|++++|+|+||||||||+++|+|.+ .|..|.|.++|.++...  ....++|.++ 
T Consensus         2 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~   80 (237)
T TIGR00968         2 EIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE-QPDSGRIRLNGQDATRVHARDRKIGFVFQH   80 (237)
T ss_pred             EEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence            45566666653     348999999999999999999999999999999 89999999999887421  1111121111 


Q ss_pred             -------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675          155 -------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (279)
Q Consensus       155 -------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~  210 (279)
                             ...+.+..            ...+...+...++..    ....+|+++++| .++++++.+|++  +++|||+
T Consensus        81 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l--lllDEP~  158 (237)
T TIGR00968        81 YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV--LLLDEPF  158 (237)
T ss_pred             hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence                   11111110            011122233333321    234578888888 999999999998  9999999


Q ss_pred             cchhccChhhHHHHHh
Q 023675          211 QVCEARDPKGLYKLAR  226 (279)
Q Consensus       211 ~~l~~R~~~~l~~~~~  226 (279)
                      ..++....+.+++.+.
T Consensus       159 ~~LD~~~~~~~~~~l~  174 (237)
T TIGR00968       159 GALDAKVRKELRSWLR  174 (237)
T ss_pred             ccCCHHHHHHHHHHHH
Confidence            9999988776655443

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.63  E-value=2.2e-15  Score=134.01  Aligned_cols=129  Identities=21%  Similarity=0.248  Sum_probs=90.1

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c----ccCCCCCcc--------cH
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L----NRDLSFKAE--------DR  156 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~----~~~~~~~~~--------~~  156 (279)
                      ++.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    +    ...++|.++        ..
T Consensus        41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~-~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv  119 (269)
T cd03294          41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-EPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTV  119 (269)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcH
Confidence            4559999999999999999999999999999999 89999999999876321    0    111222111        11


Q ss_pred             HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675          157 VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (279)
Q Consensus       157 ~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~  219 (279)
                      .+.+..            ...+..++...++..    ....+|+++++| .++++++.+|++  ++||||+..++....+
T Consensus       120 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~i--llLDEPt~~LD~~~~~  197 (269)
T cd03294         120 LENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDI--LLMDEAFSALDPLIRR  197 (269)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCCccCCHHHHH
Confidence            111110            011122233333322    244588899998 899999999998  9999999999998877


Q ss_pred             hHHHH
Q 023675          220 GLYKL  224 (279)
Q Consensus       220 ~l~~~  224 (279)
                      .+++.
T Consensus       198 ~l~~~  202 (269)
T cd03294         198 EMQDE  202 (269)
T ss_pred             HHHHH
Confidence            76554

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.63  E-value=2.7e-15  Score=132.41  Aligned_cols=141  Identities=20%  Similarity=0.200  Sum_probs=95.3

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK  152 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~  152 (279)
                      ++++++++.|..     +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...    ....++|.
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL-RPDAGTVDLAGVDLHGLSRRARARRVALV   80 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence            455666666653     349999999999999999999999999999999 89999999999876321    00111111


Q ss_pred             ccc--------HHHHHH----------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          153 AED--------RVENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       153 ~~~--------~~~~~~----------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      +++        ..+.+.                ....+...+...++..    .+..+|+++++| .++++++.+|++  
T Consensus        81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--  158 (256)
T TIGR03873        81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKL--  158 (256)
T ss_pred             cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--
Confidence            110        011110                0001122222233322    344578888888 899999999998  


Q ss_pred             EEEeCCccchhccChhhHHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++|||+..++....+.+.+.+
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l  180 (256)
T TIGR03873       159 LLLDEPTNHLDVRAQLETLALV  180 (256)
T ss_pred             EEEcCccccCCHHHHHHHHHHH
Confidence            9999999999988777655433

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.63  E-value=4.3e-15  Score=130.60  Aligned_cols=143  Identities=20%  Similarity=0.197  Sum_probs=96.0

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-C---CccEEEEcCeeccc------cc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------GL  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~---~~G~i~ldgd~i~~------~~  145 (279)
                      .++++++++.|.+     +.||++.+|++++|+|+||||||||+++|+|++.. |   .+|+|+++|.++..      ..
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   82 (250)
T PRK14240          3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL   82 (250)
T ss_pred             eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence            4677888888764     33899999999999999999999999999998731 2   68999999987642      01


Q ss_pred             ccCCCCCcc-------cHHHHHHH------------HH-HHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675          146 NRDLSFKAE-------DRVENIRR------------IG-EVAKLFADAGV--------ICIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       146 ~~~~~~~~~-------~~~~~~~~------------v~-~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      ...++|.++       ...+.+..            .. .+...+...++        ...+..+|+++++| .++++++
T Consensus        83 ~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  162 (250)
T PRK14240         83 RKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALA  162 (250)
T ss_pred             hccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence            111222111       11111110            00 01111112221        11234588899888 9999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .+|++  +++|||+..++......+.+.+
T Consensus       163 ~~p~l--lllDEP~~~LD~~~~~~l~~~l  189 (250)
T PRK14240        163 VEPEV--LLMDEPTSALDPISTLKIEELI  189 (250)
T ss_pred             cCCCE--EEEeCCCccCCHHHHHHHHHHH
Confidence            99998  9999999999988777655543

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=2.4e-15  Score=132.29  Aligned_cols=144  Identities=17%  Similarity=0.135  Sum_probs=96.7

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------cc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GL  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~~  145 (279)
                      .+++++++++|..     ..||++.+|++++|+|+||||||||+++|+|.+..    |.+|.|.++|.++..      ..
T Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~   83 (251)
T PRK14251          4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL   83 (251)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence            3677888888864     34999999999999999999999999999999831    479999999987631      01


Q ss_pred             ccCCCCCcc-------cHHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675          146 NRDLSFKAE-------DRVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       146 ~~~~~~~~~-------~~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      ...+++.++       ...+.+..            . ..+...+...++        ......+|+++++| .++++++
T Consensus        84 ~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~  163 (251)
T PRK14251         84 RKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA  163 (251)
T ss_pred             hccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence            111222111       11111110            0 011112222232        11234578888888 8999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      .+|++  +++|||+..++....+.+++.+.
T Consensus       164 ~~p~l--lllDEP~~~LD~~~~~~l~~~l~  191 (251)
T PRK14251        164 VRPKV--VLLDEPTSALDPISSSEIEETLM  191 (251)
T ss_pred             cCCCE--EEecCCCccCCHHHHHHHHHHHH
Confidence            99998  99999999999987776555443

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.63  E-value=1.6e-15  Score=137.03  Aligned_cols=129  Identities=19%  Similarity=0.226  Sum_probs=90.2

Q ss_pred             cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCccc--------HHHHH
Q 023675           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAED--------RVENI  160 (279)
Q Consensus        92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~~--------~~~~~  160 (279)
                      .++.||++++|++++|+|+||||||||+++|+|++ .|++|.|+++|.++...   ....++|.++.        ..+.+
T Consensus         9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l   87 (302)
T TIGR01188         9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL-RPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENL   87 (302)
T ss_pred             EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHH
Confidence            34568999999999999999999999999999999 89999999999876421   11112222211        11111


Q ss_pred             HHH------------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          161 RRI------------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       161 ~~v------------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      ...            ..+..++...++..    .+..+|+++++| .++++++.+|++  ++||||+..++....+.+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~gLD~~~~~~l~~  165 (302)
T TIGR01188        88 EMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDV--LFLDEPTTGLDPRTRRAIWD  165 (302)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHHH
Confidence            110            01222233333322    344588899988 999999999998  99999999999887665443

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=2.7e-15  Score=134.21  Aligned_cols=142  Identities=18%  Similarity=0.206  Sum_probs=99.1

Q ss_pred             CeEEeecceeecC-----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----
Q 023675           81 NILWHKNSVDKRD-----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----  144 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----  144 (279)
                      .+++++++++|..           +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...     
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~i~g~~i~~~~~~~~   82 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL-IPSEGKVYVDGLDTSDEENLWD   82 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEeccccccHHH
Confidence            3677777777752           238999999999999999999999999999999 89999999999887421     


Q ss_pred             cccCCCCCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675          145 LNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       145 ~~~~~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      ....++|.+++.         ...+..            ...+..++...++..    ....+|+++++| .++++++.+
T Consensus        83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~  162 (280)
T PRK13633         83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR  162 (280)
T ss_pred             HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            111223222221         000000            011112222233322    345688889888 899999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      |++  +++|||+..++......+.+.+
T Consensus       163 p~l--lllDEPt~gLD~~~~~~l~~~l  187 (280)
T PRK13633        163 PEC--IIFDEPTAMLDPSGRREVVNTI  187 (280)
T ss_pred             CCE--EEEeCCcccCCHHHHHHHHHHH
Confidence            998  9999999999999887765543

>PTZ00243 ABC transporter; Provisional

Probab=99.63  E-value=4.2e-16  Score=166.55  Aligned_cols=145  Identities=17%  Similarity=0.154  Sum_probs=102.3

Q ss_pred             CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.|+|+|++|+|..+       .||++++|+.++|||++|||||||+++|.|++ +|.+|.|++||.++.+.    ++.
T Consensus      1306 ~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243       1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-EVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred             CCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcccCCHHHHHh
Confidence            4679999999999643       38999999999999999999999999999999 89999999999998531    222


Q ss_pred             CCCCCccc-------HHHHH-----------HHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHHHhCCC-
Q 023675          148 DLSFKAED-------RVENI-----------RRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACRSMLPE-  198 (279)
Q Consensus       148 ~~~~~~~~-------~~~~~-----------~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~-  198 (279)
                      .+++.+++       .++++           ....+.+.   ...  ..|+.    ..+..+|+|++|| .+||+++++ 
T Consensus      1385 ~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~ 1464 (1560)
T PTZ00243       1385 QFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKG 1464 (1560)
T ss_pred             cceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCC
Confidence            22222221       11111           11111110   010  11222    2345689999999 999999985 


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHHh
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +++  ++|||+++.++....+.+.+.++
T Consensus      1465 ~~I--LlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243       1465 SGF--ILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred             CCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            788  99999999998887766655444

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=2.4e-15  Score=132.89  Aligned_cols=143  Identities=17%  Similarity=0.197  Sum_probs=97.8

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeecccc------c
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------L  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~~------~  145 (279)
                      .++++++++.|..     +.||++.+|++++|+|+||||||||+++|+|++..    |.+|+|+++|.++...      .
T Consensus        12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   91 (258)
T PRK14268         12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVEL   91 (258)
T ss_pred             eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHH
Confidence            5788888888864     34999999999999999999999999999999832    3799999999876321      1


Q ss_pred             ccCCCCCccc-------HHHHHHHH------------HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675          146 NRDLSFKAED-------RVENIRRI------------GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       146 ~~~~~~~~~~-------~~~~~~~v------------~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      ...++|.++.       ..+.+...            ..+...+...++        ......+|+++++| .++++++.
T Consensus        92 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~  171 (258)
T PRK14268         92 RKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV  171 (258)
T ss_pred             hhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence            1112222111       11111100            011112222222        11234578889888 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHH
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +|++  +++|||+..++......+++.+
T Consensus       172 ~p~l--lllDEPt~~LD~~~~~~l~~~l  197 (258)
T PRK14268        172 KPKI--ILFDEPTSALDPISTARIEDLI  197 (258)
T ss_pred             CCCE--EEEeCCCcccCHHHHHHHHHHH
Confidence            9998  9999999999998877665543

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.63  E-value=3e-15  Score=138.12  Aligned_cols=129  Identities=23%  Similarity=0.271  Sum_probs=90.6

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------cccCCCCCccc--------HH
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLSFKAED--------RV  157 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------~~~~~~~~~~~--------~~  157 (279)
                      +.||++++|++++|+|+||||||||+++|+|++ .|++|.|+++|.++...        ....++|.+++        ..
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~   94 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT-RPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVR   94 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHH
Confidence            459999999999999999999999999999999 89999999999876321        11112222211        11


Q ss_pred             HHHHH------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          158 ENIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       158 ~~~~~------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +.+..      -..+..++...++..    ....+|+++++| .++++++.+|++  ++||||+..++......+.+.+
T Consensus        95 enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~l--lLLDEPts~LD~~~~~~l~~~L  171 (352)
T PRK11144         95 GNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPEL--LLMDEPLASLDLPRKRELLPYL  171 (352)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence            11110      011222233333322    345688999999 999999999998  9999999999998877655433

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.62  E-value=3.2e-15  Score=130.03  Aligned_cols=140  Identities=19%  Similarity=0.135  Sum_probs=95.2

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc-
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE-  154 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~-  154 (279)
                      .+++++++|..     +.+|++.+|++++|+|+||||||||+++|+|.+ .|..|.|.++|.++...  ....+++.++ 
T Consensus         2 ~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~   80 (232)
T cd03300           2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE-TPTSGEILLDGKDITNLPPHKRPVNTVFQN   80 (232)
T ss_pred             EEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCChhhcceEEEecc
Confidence            34555665543     458999999999999999999999999999999 89999999999877421  0111221111 


Q ss_pred             -------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675          155 -------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (279)
Q Consensus       155 -------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~  210 (279)
                             .....+..            ......++...++..    ....+++++++| .++++++.+|++  +++|||+
T Consensus        81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l--lllDEP~  158 (232)
T cd03300          81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV--LLLDEPL  158 (232)
T ss_pred             cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence                   11111110            001112222223322    234578888888 899999999998  9999999


Q ss_pred             cchhccChhhHHHHH
Q 023675          211 QVCEARDPKGLYKLA  225 (279)
Q Consensus       211 ~~l~~R~~~~l~~~~  225 (279)
                      ..++....+.+++.+
T Consensus       159 ~gLD~~~~~~l~~~l  173 (232)
T cd03300         159 GALDLKLRKDMQLEL  173 (232)
T ss_pred             ccCCHHHHHHHHHHH
Confidence            999998887766543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=3e-15  Score=132.36  Aligned_cols=144  Identities=19%  Similarity=0.187  Sum_probs=97.6

Q ss_pred             CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-C---CccEEEEcCeeccc------c
Q 023675           80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------G  144 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~---~~G~i~ldgd~i~~------~  144 (279)
                      ..++++++++.|..+     .+|++.+|++++|+|+||||||||+++|+|.+.. |   .+|.|+++|.++..      .
T Consensus        11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~   90 (259)
T PRK14274         11 EVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE   90 (259)
T ss_pred             ceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence            357888888888643     3899999999999999999999999999999831 3   58999999987631      1


Q ss_pred             cccCCCCCcc-------cHHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675          145 LNRDLSFKAE-------DRVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       145 ~~~~~~~~~~-------~~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ....++|.++       ...+.+..            . ..+...+...++        ......+++++++| .+++++
T Consensus        91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral  170 (259)
T PRK14274         91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARAL  170 (259)
T ss_pred             HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence            1111222211       11111100            0 011112222232        11234578889888 899999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +.+|++  +++|||+..++......+.+.+
T Consensus       171 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l  198 (259)
T PRK14274        171 ATNPDV--LLMDEPTSALDPVSTRKIEELI  198 (259)
T ss_pred             hcCCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence            999998  9999999999988777655543

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.62  E-value=2.6e-15  Score=133.93  Aligned_cols=142  Identities=18%  Similarity=0.209  Sum_probs=96.5

Q ss_pred             CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675           81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~  149 (279)
                      .|++++++++|..       +.||.+++|++++|+|+||||||||+++|.|++ . .+|.|++||.++...    +...+
T Consensus         2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~-~-~~G~I~i~g~~i~~~~~~~lr~~i   79 (275)
T cd03289           2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-N-TEGDIQIDGVSWNSVPLQKWRKAF   79 (275)
T ss_pred             eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEhhhCCHHHHhhhE
Confidence            5788899888842       338999999999999999999999999999999 5 689999999887321    11112


Q ss_pred             CCCcccH-------HHHHHH-----HHHHHHHHHhCCcch---------------hcccCChHHHHH-HHHHHhCCCCCc
Q 023675          150 SFKAEDR-------VENIRR-----IGEVAKLFADAGVIC---------------IACLISPYRKDR-DACRSMLPEGDF  201 (279)
Q Consensus       150 ~~~~~~~-------~~~~~~-----v~~~~~~~~~~~~~~---------------i~~~~~~~~~~r-~~ar~l~~~~~~  201 (279)
                      ++.+++.       ++.+..     ..++...+...++..               .+..+++++++| .++|+++.+|++
T Consensus        80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i  159 (275)
T cd03289          80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI  159 (275)
T ss_pred             EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            2211111       111100     001111111122211               122378888888 899999999998


Q ss_pred             cEEEEeCCccchhccChhhHHHHHh
Q 023675          202 IEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       202 i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                        +++|||+..++....+.+.+.+.
T Consensus       160 --lllDEpts~LD~~~~~~l~~~l~  182 (275)
T cd03289         160 --LLLDEPSAHLDPITYQVIRKTLK  182 (275)
T ss_pred             --EEEECccccCCHHHHHHHHHHHH
Confidence              99999999999887776665554

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.62  E-value=2.1e-15  Score=131.60  Aligned_cols=141  Identities=21%  Similarity=0.253  Sum_probs=93.4

Q ss_pred             EEeecceeec--------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCC
Q 023675           83 LWHKNSVDKR--------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLS  150 (279)
Q Consensus        83 ~~~~~~~~~~--------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~  150 (279)
                      +++++++.|.        ++.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...    ....++
T Consensus         2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (238)
T cd03249           2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-DPTSGEILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             eEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC-CCCCCEEEECCEehhhcCHHHHHhhEE
Confidence            4555655553        2348999999999999999999999999999999 89999999999776311    011122


Q ss_pred             CCcccH-------HHHHH---------HHHH------HHHHHHhC--Cc----chhcccCChHHHHH-HHHHHhCCCCCc
Q 023675          151 FKAEDR-------VENIR---------RIGE------VAKLFADA--GV----ICIACLISPYRKDR-DACRSMLPEGDF  201 (279)
Q Consensus       151 ~~~~~~-------~~~~~---------~v~~------~~~~~~~~--~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~  201 (279)
                      |.++..       .+.+.         .+..      +...+...  +.    ......+|+++++| .++++++.+|++
T Consensus        81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  160 (238)
T cd03249          81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI  160 (238)
T ss_pred             EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            222211       00000         0000      00000000  11    11234578888888 899999999998


Q ss_pred             cEEEEeCCccchhccChhhHHHHHh
Q 023675          202 IEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       202 i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                        +++|||+..++......+++.+.
T Consensus       161 --lllDEP~~gLD~~~~~~l~~~l~  183 (238)
T cd03249         161 --LLLDEATSALDAESEKLVQEALD  183 (238)
T ss_pred             --EEEeCccccCCHHHHHHHHHHHH
Confidence              99999999999988877666554

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.62  E-value=2.6e-15  Score=137.29  Aligned_cols=141  Identities=18%  Similarity=0.150  Sum_probs=98.2

Q ss_pred             CeEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC---ccEEEEcCeecccc----
Q 023675           81 NILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHG----  144 (279)
Q Consensus        81 ~i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~---~G~i~ldgd~i~~~----  144 (279)
                      .++++|+++.|.         ++.||++.+|++++|+|+||||||||+++|+|++ .|.   +|.|+++|.++...    
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~-~p~~~~sG~I~~~G~~i~~~~~~~   90 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL-AANGRIGGSATFNGREILNLPEKE   90 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCCCCeEEEECCEECCcCCHHH
Confidence            467888877774         2349999999999999999999999999999999 665   99999999987321    


Q ss_pred             ---c-ccCCCCCcccH----------HHHHH-------------HHHHHHHHHHhCCcc-------hhcccCChHHHHH-
Q 023675          145 ---L-NRDLSFKAEDR----------VENIR-------------RIGEVAKLFADAGVI-------CIACLISPYRKDR-  189 (279)
Q Consensus       145 ---~-~~~~~~~~~~~----------~~~~~-------------~v~~~~~~~~~~~~~-------~i~~~~~~~~~~r-  189 (279)
                         + ...+++.+++.          ..++.             ....+..++...++.       .....+|+++++| 
T Consensus        91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv  170 (330)
T PRK09473         91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRV  170 (330)
T ss_pred             HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHH
Confidence               0 11233222221          01000             001122223333332       1344588999999 


Q ss_pred             HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       190 ~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      .++++++.+|++  +++|||+..++......+++.
T Consensus       171 ~IArAL~~~P~l--lilDEPts~LD~~~~~~i~~l  203 (330)
T PRK09473        171 MIAMALLCRPKL--LIADEPTTALDVTVQAQIMTL  203 (330)
T ss_pred             HHHHHHHcCCCE--EEEeCCCccCCHHHHHHHHHH
Confidence            999999999998  999999999998887765543

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=3.6e-15  Score=133.85  Aligned_cols=145  Identities=19%  Similarity=0.206  Sum_probs=98.1

Q ss_pred             CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc--c--CCccEEEEcCeecccc------
Q 023675           80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRHG------  144 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~--~--~~~G~i~ldgd~i~~~------  144 (279)
                      ..+++++++++|..     +.+|++.+|++++|+|+||||||||+++|+|++.  .  |.+|.|.++|.++...      
T Consensus        38 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~  117 (286)
T PRK14275         38 PHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL  117 (286)
T ss_pred             eEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHH
Confidence            35788898888864     3489999999999999999999999999999862  2  4899999999876311      


Q ss_pred             cccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675          145 LNRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       145 ~~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ....++|.+++       ..+.+..            . ..+...+...++        ...+..+|+++++| .+++++
T Consensus       118 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL  197 (286)
T PRK14275        118 LRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL  197 (286)
T ss_pred             hhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence            11122221111       1111110            0 011111222222        12345688899988 899999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +.+|++  ++||||+..++......+++.++
T Consensus       198 ~~~p~l--llLDEPt~gLD~~~~~~l~~~L~  226 (286)
T PRK14275        198 AVEPEI--LLLDEPTSALDPKATAKIEDLIQ  226 (286)
T ss_pred             hcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            999998  99999999999887776655443

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=3.9e-15  Score=131.03  Aligned_cols=143  Identities=16%  Similarity=0.169  Sum_probs=95.8

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-C---CccEEEEcCeeccc------cc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------GL  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~---~~G~i~ldgd~i~~------~~  145 (279)
                      .++++++++.|..     +.||++++|++++|+|+||||||||+++|+|.+.. |   ++|.|+++|.++..      ..
T Consensus         4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~   83 (252)
T PRK14256          4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI   83 (252)
T ss_pred             EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence            4677888888754     34899999999999999999999999999999831 3   58999999987632      11


Q ss_pred             ccCCCCCcc--------cHHHHHHH------------H-HHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHh
Q 023675          146 NRDLSFKAE--------DRVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       146 ~~~~~~~~~--------~~~~~~~~------------v-~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ...++|.++        ...+.+..            . ..+...+...++.        ..+..+|+++++| .+++++
T Consensus        84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral  163 (252)
T PRK14256         84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI  163 (252)
T ss_pred             hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence            111111111        11111110            0 0111222222321        1244578888888 899999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +.+|++  +++|||+..++....+.+++.+
T Consensus       164 ~~~p~l--lllDEP~~gLD~~~~~~l~~~l  191 (252)
T PRK14256        164 AVKPEV--ILMDEPASALDPISTLKIEELI  191 (252)
T ss_pred             hcCCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence            999988  9999999999988776655443

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.62  E-value=3.9e-15  Score=132.26  Aligned_cols=144  Identities=19%  Similarity=0.165  Sum_probs=98.8

Q ss_pred             CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------c
Q 023675           80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------G  144 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~  144 (279)
                      ..+++++++++|.++     .||++.+|++++|+|+||||||||+++|+|++..    |.+|+|+++|.++..      .
T Consensus        19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   98 (267)
T PRK14237         19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE   98 (267)
T ss_pred             eEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence            458889998888643     4999999999999999999999999999999842    579999999988732      0


Q ss_pred             cccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675          145 LNRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       145 ~~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ....++|.+++       ..+.+..            . ..+...+...++        ......+|+++++| .+++++
T Consensus        99 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral  178 (267)
T PRK14237         99 MRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI  178 (267)
T ss_pred             HhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence            11122222221       1111111            0 011111222222        11234578888888 899999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +.+|++  ++||||+..++......+.+.+
T Consensus       179 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l  206 (267)
T PRK14237        179 AVKPDI--LLMDEPASALDPISTMQLEETM  206 (267)
T ss_pred             hcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence            999998  9999999999998777655543

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.62  E-value=3e-15  Score=129.56  Aligned_cols=146  Identities=17%  Similarity=0.202  Sum_probs=99.5

Q ss_pred             CCCCeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675           78 KSTNILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L  145 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~  145 (279)
                      ..+.+++++++++|.+        ..+|++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...    .
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~   86 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY-QPQGGQVLLDGKPISQYEHKYL   86 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcEEEECCCchHHcCHHHH
Confidence            3456888898888864        228999999999999999999999999999999 89999999999765311    0


Q ss_pred             ccCCCCCcccH-------HHHH-------------HHHH--HHHHHHHhC--Ccc----hhcccCChHHHHH-HHHHHhC
Q 023675          146 NRDLSFKAEDR-------VENI-------------RRIG--EVAKLFADA--GVI----CIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       146 ~~~~~~~~~~~-------~~~~-------------~~v~--~~~~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      ...++|.++..       .+.+             ....  .....+...  ++.    .....+|+++++| .++++++
T Consensus        87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~  166 (226)
T cd03248          87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI  166 (226)
T ss_pred             HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence            11112111110       0000             0000  001111111  221    1244578888888 9999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      .+|++  +++|||+..++....+.+.+.++
T Consensus       167 ~~p~l--lllDEPt~~LD~~~~~~l~~~l~  194 (226)
T cd03248         167 RNPQV--LILDEATSALDAESEQQVQQALY  194 (226)
T ss_pred             cCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            99998  99999999999988777665544

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.62  E-value=3.7e-15  Score=132.70  Aligned_cols=144  Identities=19%  Similarity=0.157  Sum_probs=97.6

Q ss_pred             CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccc--c--CCccEEEEcCeeccc------c
Q 023675           80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------G  144 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~--~--~~~G~i~ldgd~i~~------~  144 (279)
                      ..++++++++.|.++     .||++.+|++++|+|+||||||||+++|+|.+.  .  |.+|.|.++|.++..      .
T Consensus        23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~  102 (271)
T PRK14238         23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE  102 (271)
T ss_pred             eEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence            358889999888643     389999999999999999999999999999983  1  689999999987631      0


Q ss_pred             cccCCCCCccc-------HHHHHHH------------HHH-HHHHHHhCC----c----chhcccCChHHHHH-HHHHHh
Q 023675          145 LNRDLSFKAED-------RVENIRR------------IGE-VAKLFADAG----V----ICIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       145 ~~~~~~~~~~~-------~~~~~~~------------v~~-~~~~~~~~~----~----~~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ....++|.+++       ..+.+..            ..+ +...+...+    +    ...+..+|+++++| .+++++
T Consensus       103 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL  182 (271)
T PRK14238        103 LRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL  182 (271)
T ss_pred             HhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            11112221111       1111110            000 111111111    1    11234578889888 999999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +.+|++  +++|||+..++....+.+.+.+
T Consensus       183 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l  210 (271)
T PRK14238        183 AIEPDV--ILMDEPTSALDPISTLKVEELV  210 (271)
T ss_pred             HcCCCE--EEEeCCCCcCCHHHHHHHHHHH
Confidence            999998  9999999999998877755543

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.62  E-value=4.3e-15  Score=132.08  Aligned_cols=139  Identities=19%  Similarity=0.174  Sum_probs=94.5

Q ss_pred             eEEeecceeec--------------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---
Q 023675           82 ILWHKNSVDKR--------------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---  144 (279)
Q Consensus        82 i~~~~~~~~~~--------------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---  144 (279)
                      |+++++++.|.              ++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...   
T Consensus         4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~sG~i~~~g~~~~~~~~~   82 (268)
T PRK10419          4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE-SPSQGNVSWRGEPLAKLNRA   82 (268)
T ss_pred             EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEeccccChh
Confidence            55667766665              2338999999999999999999999999999998 89999999999876321   


Q ss_pred             ----cccCCCCCcccH----------HHHH----H---------HHHHHHHHHHhCCcc-----hhcccCChHHHHH-HH
Q 023675          145 ----LNRDLSFKAEDR----------VENI----R---------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DA  191 (279)
Q Consensus       145 ----~~~~~~~~~~~~----------~~~~----~---------~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~  191 (279)
                          ....++|.+++.          ...+    .         ....+..++...++.     .....+++++++| .+
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l  162 (268)
T PRK10419         83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL  162 (268)
T ss_pred             HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence                111122211110          0100    0         001122223333332     1234578888888 99


Q ss_pred             HHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       192 ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      +++++.+|++  +++|||+..++....+.+++
T Consensus       163 aral~~~p~l--llLDEPt~~LD~~~~~~~~~  192 (268)
T PRK10419        163 ARALAVEPKL--LILDEAVSNLDLVLQAGVIR  192 (268)
T ss_pred             HHHHhcCCCE--EEEeCCCcccCHHHHHHHHH
Confidence            9999999998  99999999999876665444

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.62  E-value=6.3e-16  Score=134.47  Aligned_cols=141  Identities=19%  Similarity=0.249  Sum_probs=93.5

Q ss_pred             EEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675           83 LWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF  151 (279)
Q Consensus        83 ~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~  151 (279)
                      ++++++++|..       ..+|++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    ....++|
T Consensus         2 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (234)
T cd03251           2 EFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY-DVDSGRILIDGHDVRDYTLASLRRQIGL   80 (234)
T ss_pred             EEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-cCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            45566666643       338999999999999999999999999999999 89999999999876321    0111111


Q ss_pred             Cccc-------HHHHHH---------HHHH------HHHHHHhC--Ccc----hhcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          152 KAED-------RVENIR---------RIGE------VAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       152 ~~~~-------~~~~~~---------~v~~------~~~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      .+++       ..+.+.         .+..      +...+...  ++.    ..+..+++++++| .++++++.+|++ 
T Consensus        81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l-  159 (234)
T cd03251          81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI-  159 (234)
T ss_pred             eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE-
Confidence            1110       011100         0000      01111110  111    1234578888888 999999999998 


Q ss_pred             EEEEeCCccchhccChhhHHHHHh
Q 023675          203 EVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                       +++|||+..++......+++.+.
T Consensus       160 -llLDEP~~~LD~~~~~~l~~~l~  182 (234)
T cd03251         160 -LILDEATSALDTESERLVQAALE  182 (234)
T ss_pred             -EEEeCccccCCHHHHHHHHHHHH
Confidence             99999999999988777665543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=3.7e-15  Score=136.31  Aligned_cols=141  Identities=15%  Similarity=0.174  Sum_probs=96.5

Q ss_pred             eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc---CCccEEEEcCeecccc----c
Q 023675           82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHG----L  145 (279)
Q Consensus        82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~---~~~G~i~ldgd~i~~~----~  145 (279)
                      ++++|+++.|.         ++.||++++|++++|+|+||||||||+++|+|++..   +++|.|+++|.++...    +
T Consensus         4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~   83 (330)
T PRK15093          4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER   83 (330)
T ss_pred             EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence            56667766663         344999999999999999999999999999999842   5789999999887321    0


Q ss_pred             ----ccCCCCCcccH----------HHHHH------------------HHHHHHHHHHhCCcc-------hhcccCChHH
Q 023675          146 ----NRDLSFKAEDR----------VENIR------------------RIGEVAKLFADAGVI-------CIACLISPYR  186 (279)
Q Consensus       146 ----~~~~~~~~~~~----------~~~~~------------------~v~~~~~~~~~~~~~-------~i~~~~~~~~  186 (279)
                          ...++|.+++.          .+.+.                  ....+..++...++.       .....+|+++
T Consensus        84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~  163 (330)
T PRK15093         84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGE  163 (330)
T ss_pred             HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence                11222222211          00000                  001122333334442       2344688999


Q ss_pred             HHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          187 KDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       187 ~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++| .++++++.+|++  +++|||+..++......+.+.
T Consensus       164 ~QRv~iArAL~~~P~l--lilDEPts~LD~~~~~~i~~l  200 (330)
T PRK15093        164 CQKVMIAIALANQPRL--LIADEPTNAMEPTTQAQIFRL  200 (330)
T ss_pred             HHHHHHHHHHHCCCCE--EEEeCCCCcCCHHHHHHHHHH
Confidence            999 999999999998  999999999998877665543

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.62  E-value=2e-15  Score=125.78  Aligned_cols=130  Identities=16%  Similarity=0.236  Sum_probs=87.1

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCccc--------HHHHHH
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAED--------RVENIR  161 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~~--------~~~~~~  161 (279)
                      .+.||++..|++++|.|+|||||||+++.|+.+| .|++|.|++||-+..+.   ....++....+        -++++.
T Consensus        19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL-~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~   97 (245)
T COG4555          19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL-IPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLK   97 (245)
T ss_pred             hheeEEeccceEEEEEcCCCCCchhHHHHHHHhc-cCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHH
Confidence            4559999999999999999999999999999999 99999999999876321   12222222211        112221


Q ss_pred             HHHH------------HHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          162 RIGE------------VAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       162 ~v~~------------~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ....            ++.+....++..    -....|.+.+++ .+||+++++|.+  +++|||++.++-+..+.+.+-
T Consensus        98 ~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i--~vlDEP~sGLDi~~~r~~~df  175 (245)
T COG4555          98 YFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI--LVLDEPTSGLDIRTRRKFHDF  175 (245)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe--EEEcCCCCCccHHHHHHHHHH
Confidence            1111            111111112222    122345556666 999999999988  999999999998877665443


Q ss_pred             H
Q 023675          225 A  225 (279)
Q Consensus       225 ~  225 (279)
                      +
T Consensus       176 i  176 (245)
T COG4555         176 I  176 (245)
T ss_pred             H
Confidence            3

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.62  E-value=9.8e-15  Score=129.08  Aligned_cols=140  Identities=22%  Similarity=0.177  Sum_probs=94.2

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK  152 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~  152 (279)
                      ++++++++.|..     +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    ....++|.
T Consensus         3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~~   81 (258)
T PRK13548          3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL-SPDSGEVRLNGRPLADWSPAELARRRAVL   81 (258)
T ss_pred             EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence            566677777754     348999999999999999999999999999999 89999999999876321    00111111


Q ss_pred             cc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhC------CCCCc
Q 023675          153 AE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSML------PEGDF  201 (279)
Q Consensus       153 ~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~------~~~~~  201 (279)
                      ++        ...+.+..            -.....++...++..    .+..+|+++++| .++++++      .+|++
T Consensus        82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l  161 (258)
T PRK13548         82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW  161 (258)
T ss_pred             ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence            11        11111100            001122222233322    344688899988 8999999      47788


Q ss_pred             cEEEEeCCccchhccChhhHHHH
Q 023675          202 IEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       202 i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                        ++||||+..++......+.+.
T Consensus       162 --llLDEPt~~LD~~~~~~l~~~  182 (258)
T PRK13548        162 --LLLDEPTSALDLAHQHHVLRL  182 (258)
T ss_pred             --EEEeCCcccCCHHHHHHHHHH
Confidence              999999999998877665443

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=6.4e-15  Score=130.71  Aligned_cols=146  Identities=17%  Similarity=0.191  Sum_probs=98.4

Q ss_pred             CCCCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-C---CccEEEEcCeecc---c--
Q 023675           78 KSTNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCR---H--  143 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~---~~G~i~ldgd~i~---~--  143 (279)
                      ..+.|++++++++|..     +.+|++++|++++|+|+||||||||+++|+|++.. |   .+|.|.++|.++.   .  
T Consensus        13 ~~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~   92 (265)
T PRK14252         13 TQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV   92 (265)
T ss_pred             CCceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence            3467889999988864     33899999999999999999999999999999832 2   6899999987542   0  


Q ss_pred             ---ccccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCcc--------hhcccCChHHHHH-HH
Q 023675          144 ---GLNRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DA  191 (279)
Q Consensus       144 ---~~~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~  191 (279)
                         .....++|.+++       ..+.+..            . ......+...++.        .....+++++++| .+
T Consensus        93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l  172 (265)
T PRK14252         93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI  172 (265)
T ss_pred             CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence               111122222221       1111110            0 1111222222221        1234578888888 89


Q ss_pred             HHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       192 ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +++++.+|++  +++|||+..++....+.+++.+
T Consensus       173 aral~~~p~l--lllDEPt~gLD~~~~~~l~~~l  204 (265)
T PRK14252        173 ARALATDPEI--LLFDEPTSALDPIATASIEELI  204 (265)
T ss_pred             HHHHHcCCCE--EEEeCCCccCCHHHHHHHHHHH
Confidence            9999999998  9999999999988777655543

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.61  E-value=1.4e-15  Score=124.45  Aligned_cols=106  Identities=25%  Similarity=0.312  Sum_probs=81.6

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhC
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADA  173 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  173 (279)
                      ..++++.+|++++|+|+||||||||+++|++.+ .+..|.++++|.++...       ...   .          .... 
T Consensus        17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~-~~~~G~i~~~~~~~~~~-------~~~---~----------~~~~-   74 (157)
T cd00267          17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL-KPTSGEILIDGKDIAKL-------PLE---E----------LRRR-   74 (157)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccC-------CHH---H----------HHhc-
Confidence            448999999999999999999999999999999 78999999999877421       000   0          0000 


Q ss_pred             CcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          174 GVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       174 ~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                        +.+...+++++++| .++++++.++++  +++|||+..++.+....+.+.+
T Consensus        75 --i~~~~qlS~G~~~r~~l~~~l~~~~~i--~ilDEp~~~lD~~~~~~l~~~l  123 (157)
T cd00267          75 --IGYVPQLSGGQRQRVALARALLLNPDL--LLLDEPTSGLDPASRERLLELL  123 (157)
T ss_pred             --eEEEeeCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHHHHH
Confidence              11111177788888 889999999988  9999999999988776655543

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.61  E-value=3.4e-15  Score=133.40  Aligned_cols=142  Identities=14%  Similarity=0.154  Sum_probs=98.7

Q ss_pred             CeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675           81 NILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD  148 (279)
Q Consensus        81 ~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~  148 (279)
                      .+++++++++|..        +.+|++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...    ....
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~~~~~~~~~~~   82 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF-EEFEGKVKIDGELLTAENVWNLRRK   82 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCEEEECCEECCcCCHHHHhcc
Confidence            3677788887752        238999999999999999999999999999999 89999999999876421    1112


Q ss_pred             CCCCcccH---------HHHHHH-----------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          149 LSFKAEDR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       149 ~~~~~~~~---------~~~~~~-----------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      ++|.+++.         .+.+..           . ..+...+...++..    ....+|+++++| .++++++.+|++ 
T Consensus        83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l-  161 (277)
T PRK13642         83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI-  161 (277)
T ss_pred             eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence            23322221         111110           0 01111222223322    234588888888 899999999998 


Q ss_pred             EEEEeCCccchhccChhhHHHHH
Q 023675          203 EVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                       +++|||+..++....+.+++.+
T Consensus       162 -lllDEPt~~LD~~~~~~l~~~l  183 (277)
T PRK13642        162 -IILDESTSMLDPTGRQEIMRVI  183 (277)
T ss_pred             -EEEeCCcccCCHHHHHHHHHHH
Confidence             9999999999998877765543

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.61  E-value=2.5e-15  Score=131.81  Aligned_cols=141  Identities=18%  Similarity=0.067  Sum_probs=93.1

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCeecccc-----cccCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHG-----LNRDLS  150 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd~i~~~-----~~~~~~  150 (279)
                      ++++++++.|..     +.||++++|++++|+|+||||||||+++|+|.+. .|.+|.|+++|.++...     ....++
T Consensus         2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   81 (248)
T PRK09580          2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIF   81 (248)
T ss_pred             eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceE
Confidence            456677666653     4499999999999999999999999999999952 68999999999876321     011122


Q ss_pred             CCcccH--------HHHH----------------HH--HHH-HHHHHHhCCcc----h-hc-ccCChHHHHH-HHHHHhC
Q 023675          151 FKAEDR--------VENI----------------RR--IGE-VAKLFADAGVI----C-IA-CLISPYRKDR-DACRSML  196 (279)
Q Consensus       151 ~~~~~~--------~~~~----------------~~--v~~-~~~~~~~~~~~----~-i~-~~~~~~~~~r-~~ar~l~  196 (279)
                      +.++..        ....                ..  ... +...+...++.    . .. ..+|+++++| .++++++
T Consensus        82 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~  161 (248)
T PRK09580         82 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV  161 (248)
T ss_pred             EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH
Confidence            211110        0000                00  000 00111111211    1 12 2588888888 9999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      .+|++  +++|||+..++....+.+.+.
T Consensus       162 ~~p~i--llLDEPt~~LD~~~~~~l~~~  187 (248)
T PRK09580        162 LEPEL--CILDESDSGLDIDALKIVADG  187 (248)
T ss_pred             cCCCE--EEEeCCCccCCHHHHHHHHHH
Confidence            99998  999999999999887766543

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.61  E-value=4.5e-15  Score=121.77  Aligned_cols=138  Identities=20%  Similarity=0.217  Sum_probs=92.5

Q ss_pred             eEEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH
Q 023675           82 ILWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR  156 (279)
Q Consensus        82 i~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~  156 (279)
                      ++.+++.-+|.     .+.|++..+|.+|.|+|.|||||||++++|.=+- .|..|.|.++|..++-.....=.+.+.+.
T Consensus         7 l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE-~P~~G~I~v~geei~~k~~~~G~l~~ad~   85 (256)
T COG4598           7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-KPSAGSIRVNGEEIRLKRDKDGQLKPADK   85 (256)
T ss_pred             eehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc-CCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence            34444444444     4569999999999999999999999999997655 99999999999988522111111111111


Q ss_pred             H---HHHHH---HHH--------------------------------HHHHHHhCCcc----hhcccCChHHHHH-HHHH
Q 023675          157 V---ENIRR---IGE--------------------------------VAKLFADAGVI----CIACLISPYRKDR-DACR  193 (279)
Q Consensus       157 ~---~~~~~---v~~--------------------------------~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar  193 (279)
                      +   +.+.+   +.|                                ...++..-|+.    .+...+++++++| +++|
T Consensus        86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIAR  165 (256)
T COG4598          86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIAR  165 (256)
T ss_pred             HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHH
Confidence            1   11000   000                                11111111211    2556789999999 8999


Q ss_pred             HhCCCCCccEEEEeCCccchhccChhhHH
Q 023675          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (279)
Q Consensus       194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~  222 (279)
                      +++-+|++  +++|+|++.+++.+....+
T Consensus       166 aLameP~v--mLFDEPTSALDPElVgEVL  192 (256)
T COG4598         166 ALAMEPEV--MLFDEPTSALDPELVGEVL  192 (256)
T ss_pred             HHhcCCce--EeecCCcccCCHHHHHHHH
Confidence            99999988  9999999999999877644

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.61  E-value=3.7e-15  Score=133.45  Aligned_cols=142  Identities=17%  Similarity=0.222  Sum_probs=98.4

Q ss_pred             CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCc---cEEEEcCeecccc----cc
Q 023675           81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK---LTYILDGDNCRHG----LN  146 (279)
Q Consensus        81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~---G~i~ldgd~i~~~----~~  146 (279)
                      .++++++++.|..       ..+|++++|++++|+|+||||||||+++|+|++ .|.+   |.|+++|.++...    ..
T Consensus         5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~-~p~~g~~G~i~i~g~~~~~~~~~~~~   83 (282)
T PRK13640          5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL-LPDDNPNSKITVDGITLTAKTVWDIR   83 (282)
T ss_pred             eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc-CCCCCCCcEEEECCEECCcCCHHHHH
Confidence            4678888888853       228999999999999999999999999999999 7776   8999999887421    11


Q ss_pred             cCCCCCcccH---------HHHHHH-----------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675          147 RDLSFKAEDR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       147 ~~~~~~~~~~---------~~~~~~-----------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      ..++|.+++.         .+.+..           . ..+..++...++..    ....+|+++++| .++++++.+|+
T Consensus        84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~  163 (282)
T PRK13640         84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK  163 (282)
T ss_pred             hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            1223322221         111110           0 01112222333322    234588888888 89999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHH
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +  +++|||+..++....+.+.+.+
T Consensus       164 l--lllDEPt~gLD~~~~~~l~~~l  186 (282)
T PRK13640        164 I--IILDESTSMLDPAGKEQILKLI  186 (282)
T ss_pred             E--EEEECCcccCCHHHHHHHHHHH
Confidence            8  9999999999998877655443

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.61  E-value=3.5e-15  Score=143.81  Aligned_cols=140  Identities=18%  Similarity=0.225  Sum_probs=97.5

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSF  151 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~  151 (279)
                      +++++++++|.+     +.||++.+|++++|+|+||||||||+++|+|.+ .|++|.|+++|.++...     ....++|
T Consensus         5 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   83 (501)
T PRK10762          5 LQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY-TRDAGSILYLGKEVTFNGPKSSQEAGIGI   83 (501)
T ss_pred             EEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence            677777777754     349999999999999999999999999999999 89999999999876311     0111121


Q ss_pred             Cccc--------HHHHH---------------H-HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          152 KAED--------RVENI---------------R-RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       152 ~~~~--------~~~~~---------------~-~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      .+++        ..+.+               . ....+..++...++.    ..+..+|+++++| .++++++.+|++ 
T Consensus        84 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l-  162 (501)
T PRK10762         84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV-  162 (501)
T ss_pred             EEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE-
Confidence            1111        00000               0 001122223333332    2345688999999 999999999998 


Q ss_pred             EEEEeCCccchhccChhhHHHH
Q 023675          203 EVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                       ++||||++.++......+++.
T Consensus       163 -llLDEPt~~LD~~~~~~l~~~  183 (501)
T PRK10762        163 -IIMDEPTDALTDTETESLFRV  183 (501)
T ss_pred             -EEEeCCcCCCCHHHHHHHHHH
Confidence             999999999999887765543

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=6.1e-16  Score=141.09  Aligned_cols=145  Identities=20%  Similarity=0.250  Sum_probs=107.2

Q ss_pred             CCCCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----cccc
Q 023675           78 KSTNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNR  147 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~~  147 (279)
                      ..+.+.|.++.|.|..+.      ||.+++|++++++|+||+||||++++|-|+| ++.+|.|.+||.+++.    .++.
T Consensus       259 ~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy-D~~sG~I~id~qdir~vtq~slR~  337 (497)
T COG5265         259 RLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY-DVNSGSITIDGQDIRDVTQQSLRR  337 (497)
T ss_pred             ccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh-CCcCceEEEcchhHHHhHHHHHHH
Confidence            346789999999997543      9999999999999999999999999999999 9999999999999863    2333


Q ss_pred             CCCCCcccHH--------------------HH--HHHHHHHHHHHH------hCCcchhcccCChHHHHH-HHHHHhCCC
Q 023675          148 DLSFKAEDRV--------------------EN--IRRIGEVAKLFA------DAGVICIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       148 ~~~~~~~~~~--------------------~~--~~~v~~~~~~~~------~~~~~~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      .++..+++..                    +.  .....++...+.      +.++...+-.++++++|| +++|.++++
T Consensus       338 aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~  417 (497)
T COG5265         338 AIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN  417 (497)
T ss_pred             HhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence            3444443210                    00  011112222211      123333455688999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      |++  +++||.++.|+.+-.+.+...+
T Consensus       418 p~i--l~~deatsaldt~te~~iq~~l  442 (497)
T COG5265         418 PPI--LILDEATSALDTHTEQAIQAAL  442 (497)
T ss_pred             CCE--EEEehhhhHhhhhHHHHHHHHH
Confidence            988  9999999999999887766543

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.61  E-value=8.8e-15  Score=130.35  Aligned_cols=144  Identities=22%  Similarity=0.181  Sum_probs=98.2

Q ss_pred             CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------c
Q 023675           80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------G  144 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~  144 (279)
                      ..++++++++.|.++     .+|.+++|++++|+|+||||||||+++|+|++..    |.+|.|+++|.++..      .
T Consensus        24 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~  103 (272)
T PRK14236         24 TALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAE  103 (272)
T ss_pred             cEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHH
Confidence            458899999988643     3899999999999999999999999999999842    479999999987642      0


Q ss_pred             cccCCCCCcc-------cHHHHHHHH-------------HHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHh
Q 023675          145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       145 ~~~~~~~~~~-------~~~~~~~~v-------------~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ....++|.++       ...+.+...             ..+...+...++.        .....+++++++| .+++++
T Consensus       104 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral  183 (272)
T PRK14236        104 LRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI  183 (272)
T ss_pred             HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHH
Confidence            1111222111       111111100             0011112222221        1234578888888 999999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +.+|++  +++|||+..++....+.+.+.+
T Consensus       184 ~~~p~l--llLDEPt~gLD~~~~~~l~~~L  211 (272)
T PRK14236        184 AIEPEV--LLLDEPTSALDPISTLKIEELI  211 (272)
T ss_pred             HCCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence            999998  9999999999988776655443

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.61  E-value=5.6e-15  Score=127.96  Aligned_cols=128  Identities=20%  Similarity=0.100  Sum_probs=87.5

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc-cHHHHHH-----------
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-DRVENIR-----------  161 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~-~~~~~~~-----------  161 (279)
                      +.+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... .....+.+. ...+.+.           
T Consensus        40 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~-~~~~~~~~~~tv~enl~~~~~~~~~~~~  117 (224)
T cd03220          40 DVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY-PPDSGTVTVRGRVSSLL-GLGGGFNPELTGRENIYLNGRLLGLSRK  117 (224)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEchhh-cccccCCCCCcHHHHHHHHHHHcCCCHH
Confidence            448999999999999999999999999999999 89999999999875311 111111111 0001100           


Q ss_pred             H-HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          162 R-IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       162 ~-v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      . ......++...++.    ..+..+|+++++| .++++++.+|++  +++|||+..++....+.+++.+
T Consensus       118 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lllDEP~~gLD~~~~~~~~~~l  185 (224)
T cd03220         118 EIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDI--LLIDEVLAVGDAAFQEKCQRRL  185 (224)
T ss_pred             HHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence            0 00111122222221    2345688889888 899999999998  9999999999988766655543

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.61  E-value=9.7e-16  Score=162.71  Aligned_cols=62  Identities=21%  Similarity=0.232  Sum_probs=55.4

Q ss_pred             CCeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE-cCeecc
Q 023675           80 TNILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL-DGDNCR  142 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l-dgd~i~  142 (279)
                      ..|++++++|+|+.+        .||++++|++++|+|+||||||||+++|+|++ +|.+|.|++ ||.++.
T Consensus       381 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~i~~g~~i~  451 (1466)
T PTZ00265        381 KKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-DPTEGDIIINDSHNLK  451 (1466)
T ss_pred             CcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-cCCCCeEEEeCCcchh
Confidence            479999999999742        28999999999999999999999999999999 899999999 466663

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.61  E-value=5.3e-15  Score=130.99  Aligned_cols=142  Identities=18%  Similarity=0.208  Sum_probs=96.1

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC---ccEEEEcCeecccc--------
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHG--------  144 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~---~G~i~ldgd~i~~~--------  144 (279)
                      .++++++++.|.+     +.||++.+|++++|+|+||||||||+++|+|.+ .|+   +|.|+++|.++...        
T Consensus         4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~p~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (262)
T PRK09984          4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI-TGDKSAGSHIELLGRTVQREGRLARDIR   82 (262)
T ss_pred             EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC-CCCCCCceEEEECCEecccccccchhHH
Confidence            3677788777753     349999999999999999999999999999998 554   59999999876320        


Q ss_pred             -cccCCCCCccc--------HHHHHH--------------------HHHHHHHHHHhCCcc----hhcccCChHHHHH-H
Q 023675          145 -LNRDLSFKAED--------RVENIR--------------------RIGEVAKLFADAGVI----CIACLISPYRKDR-D  190 (279)
Q Consensus       145 -~~~~~~~~~~~--------~~~~~~--------------------~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~  190 (279)
                       ....++|.++.        ..+.+.                    ....+...+...++.    .....+|+++++| .
T Consensus        83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~  162 (262)
T PRK09984         83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA  162 (262)
T ss_pred             HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence             01111111111        011110                    001112222223332    1344578889888 8


Q ss_pred             HHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       191 ~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++++++.+|++  +++|||+..++....+.+.+.+
T Consensus       163 laral~~~p~l--lllDEPt~~LD~~~~~~l~~~l  195 (262)
T PRK09984        163 IARALMQQAKV--ILADEPIASLDPESARIVMDTL  195 (262)
T ss_pred             HHHHHhcCCCE--EEecCccccCCHHHHHHHHHHH
Confidence            99999999998  9999999999998877655443

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=7.3e-15  Score=134.23  Aligned_cols=145  Identities=19%  Similarity=0.159  Sum_probs=100.0

Q ss_pred             CCCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc----
Q 023675           79 STNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH----  143 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~----  143 (279)
                      .+.|++++++++|..       +.||++++|++++|+|+||||||||+++|+|++..    |.+|.|.+||.++..    
T Consensus        78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~  157 (329)
T PRK14257         78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS  157 (329)
T ss_pred             CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            457899999999953       23899999999999999999999999999999842    568999999998842    


Q ss_pred             --ccccCCCCCccc-------HHHHHHH-----------H-H-HHHHHHHhCCc--------chhcccCChHHHHH-HHH
Q 023675          144 --GLNRDLSFKAED-------RVENIRR-----------I-G-EVAKLFADAGV--------ICIACLISPYRKDR-DAC  192 (279)
Q Consensus       144 --~~~~~~~~~~~~-------~~~~~~~-----------v-~-~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~a  192 (279)
                        .+...+++.++.       .++++..           . . .....+...++        ...+..+|+++++| .++
T Consensus       158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA  237 (329)
T PRK14257        158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA  237 (329)
T ss_pred             hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence              112222222211       1111110           0 0 00111122221        22345688999999 999


Q ss_pred             HHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       193 r~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      |+++.+|++  +++|+|++.++....+.+.+.+
T Consensus       238 RAl~~~p~I--lLLDEPts~LD~~~~~~i~~~i  268 (329)
T PRK14257        238 RAIALEPEV--LLMDEPTSALDPIATAKIEELI  268 (329)
T ss_pred             HHHHhCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence            999999998  9999999999988766654433

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=5.4e-15  Score=129.94  Aligned_cols=142  Identities=17%  Similarity=0.176  Sum_probs=95.2

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------ccc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLN  146 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~~~  146 (279)
                      ++++++++.|.+     +.+|++.+|++++|+|+||||||||+++|+|++..    +.+|.|+++|.++..      ...
T Consensus         4 l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~   83 (250)
T PRK14262          4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYR   83 (250)
T ss_pred             EEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhh
Confidence            677788777754     33899999999999999999999999999999832    379999999987631      111


Q ss_pred             cCCCCCcc-------cHHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675          147 RDLSFKAE-------DRVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       147 ~~~~~~~~-------~~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      ..++|.++       ...+.+..            . ..+...+...++        ...+..+|+++++| .++++++.
T Consensus        84 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~  163 (250)
T PRK14262         84 KKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV  163 (250)
T ss_pred             hhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC
Confidence            11222111       11111110            0 001111222222        11234578888888 89999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHH
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +|++  +++|||+..++......+.+.+
T Consensus       164 ~p~l--lllDEP~~~LD~~~~~~l~~~l  189 (250)
T PRK14262        164 EPEV--ILLDEPTSALDPIATQRIEKLL  189 (250)
T ss_pred             CCCE--EEEeCCccccCHHHHHHHHHHH
Confidence            9998  9999999999988776655543

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.61  E-value=3.7e-15  Score=143.90  Aligned_cols=142  Identities=17%  Similarity=0.201  Sum_probs=99.8

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS  150 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~  150 (279)
                      .+++++++++|.+     +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...     ....++
T Consensus        11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~   89 (510)
T PRK15439         11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV-PPDSGTLEIGGNPCARLTPAKAHQLGIY   89 (510)
T ss_pred             eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHHHhCCEE
Confidence            4778888888864     349999999999999999999999999999999 89999999999876321     001122


Q ss_pred             CCccc--------HHHHHH-------H-HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675          151 FKAED--------RVENIR-------R-IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (279)
Q Consensus       151 ~~~~~--------~~~~~~-------~-v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p  209 (279)
                      |.+++        ..+.+.       . ...+...+...++.    ..+..+|+++++| .++++++.+|++  ++||||
T Consensus        90 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l--llLDEP  167 (510)
T PRK15439         90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI--LILDEP  167 (510)
T ss_pred             EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECC
Confidence            22211        011110       0 01122223333332    2345688999999 999999999998  999999


Q ss_pred             ccchhccChhhHHHHH
Q 023675          210 LQVCEARDPKGLYKLA  225 (279)
Q Consensus       210 ~~~l~~R~~~~l~~~~  225 (279)
                      ++.++......+++.+
T Consensus       168 t~~LD~~~~~~l~~~l  183 (510)
T PRK15439        168 TASLTPAETERLFSRI  183 (510)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999998877755543

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=6.8e-15  Score=131.38  Aligned_cols=146  Identities=14%  Similarity=0.166  Sum_probs=99.7

Q ss_pred             CCCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeecccc-----
Q 023675           79 STNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG-----  144 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~~-----  144 (279)
                      ...+++++++++|..     +.||++++|++++|+|+||||||||+++|+|++..    |.+|.|+++|.++...     
T Consensus        19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~   98 (276)
T PRK14271         19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE   98 (276)
T ss_pred             CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence            346788999999864     34999999999999999999999999999999832    4799999999876321     


Q ss_pred             cccCCCCCcc-------cHHHHHHH------------H-HHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHh
Q 023675          145 LNRDLSFKAE-------DRVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       145 ~~~~~~~~~~-------~~~~~~~~------------v-~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ....++|.++       ...+.+..            . ......+...++.        ..+..+|+++++| .+++++
T Consensus        99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral  178 (276)
T PRK14271         99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL  178 (276)
T ss_pred             HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            1111222221       11111110            0 0011222223332        1234578889888 899999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +.+|++  +++|||+..++....+.+++.+.
T Consensus       179 ~~~p~l--llLDEPt~~LD~~~~~~l~~~L~  207 (276)
T PRK14271        179 AVNPEV--LLLDEPTSALDPTTTEKIEEFIR  207 (276)
T ss_pred             hcCCCE--EEEcCCcccCCHHHHHHHHHHHH
Confidence            999988  99999999999887776655443

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.61  E-value=5.1e-15  Score=118.11  Aligned_cols=157  Identities=24%  Similarity=0.321  Sum_probs=121.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----ccccCCCCCcccHHHHHHHHHHHHHHHHhCCcch
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC  177 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  177 (279)
                      -++.++|.+||||||++++|...|..+     ++|||++..     .+...+.+.++++..|+..+......-...+-.+
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~~-----F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~v   87 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELGLK-----FIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGV   87 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhCCc-----ccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeE
Confidence            488999999999999999999999766     999999953     4566788999999999888777665544567777


Q ss_pred             hcccCChHHHHHHHHHHhCC--------CCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccc---cCcCCCCCCC
Q 023675          178 IACLISPYRKDRDACRSMLP--------EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGI---DDPYEPPLNC  246 (279)
Q Consensus       178 i~~~~~~~~~~r~~ar~l~~--------~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~---r~~~~~~~~a  246 (279)
                      +.++.+...+.|+++|..++        +..+.+++|..+.+.+.+|+      .-+.+++.....+   .+.++.|+..
T Consensus        88 VlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl------~~R~gHFMp~~lleSQf~~LE~p~~~  161 (191)
T KOG3354|consen   88 VLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRL------KKRKGHFMPADLLESQFATLEAPDAD  161 (191)
T ss_pred             EEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHH------hhcccccCCHHHHHHHHHhccCCCCC
Confidence            88899999999999998655        22455699999999999998      4456776654444   3445666533


Q ss_pred             c---eEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          247 E---IVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       247 ~---~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      +   +.|+.   .+.+++++++.|++.+..
T Consensus       162 e~div~isv---~~~~~e~iv~tI~k~~~~  188 (191)
T KOG3354|consen  162 EEDIVTISV---KTYSVEEIVDTIVKMVAL  188 (191)
T ss_pred             ccceEEEee---ccCCHHHHHHHHHHHHHh
Confidence            3   55665   568999999999988754

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=6.3e-15  Score=129.65  Aligned_cols=143  Identities=18%  Similarity=0.159  Sum_probs=95.3

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------cc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GL  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~~  145 (279)
                      .++++++++.|.+     +.||++.+|++++|+|+||||||||+++|+|.+..    +.+|.|+++|.++..      ..
T Consensus         4 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   83 (251)
T PRK14270          4 KMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVEL   83 (251)
T ss_pred             EEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHH
Confidence            3567777777753     34899999999999999999999999999999832    278999999988732      01


Q ss_pred             ccCCCCCcc-------cHHHHHHH-------------HHHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675          146 NRDLSFKAE-------DRVENIRR-------------IGEVAKLFADAGV--------ICIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       146 ~~~~~~~~~-------~~~~~~~~-------------v~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      ...++|.++       ...+.+..             ...+...+...++        ......+|+++++| .++++++
T Consensus        84 ~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  163 (251)
T PRK14270         84 RKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA  163 (251)
T ss_pred             HhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            111222111       11111110             0011112222222        11344678888888 8999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .+|++  +++|||+..++......+++.+
T Consensus       164 ~~p~l--lllDEP~~~LD~~~~~~l~~~L  190 (251)
T PRK14270        164 VKPDV--ILMDEPTSALDPISTLKIEDLM  190 (251)
T ss_pred             cCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence            99998  9999999999988776655443

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.60  E-value=4.1e-15  Score=117.97  Aligned_cols=151  Identities=27%  Similarity=0.376  Sum_probs=118.1

Q ss_pred             EcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----ccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccC
Q 023675          108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLI  182 (279)
Q Consensus       108 vG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~  182 (279)
                      +|.+||||||++..|+..+...     ++|||++..     .+...+.+.++++..|+..+...+......+...++.+.
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~-----fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS   75 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAK-----FIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACS   75 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCc-----eecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecH
Confidence            5899999999999999999654     999999863     356778899999999999988776665555556788888


Q ss_pred             ChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCcccc---CcCCCCCCCceEEEccCCCCCC
Q 023675          183 SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID---DPYEPPLNCEIVLKQMGDDCPS  259 (279)
Q Consensus       183 ~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r---~~~~~~~~a~~~i~~~~~~~~~  259 (279)
                      ...++.|+++|....+-.|  |||+.+.+.+.+|.      ..++|++.....+.   ..+++|...+-+|.. | ...+
T Consensus        76 ALKr~YRD~LR~~~~~~~F--v~L~g~~~~i~~Rm------~~R~gHFM~~~ll~SQfa~LE~P~~de~vi~i-d-i~~~  145 (161)
T COG3265          76 ALKRSYRDLLREANPGLRF--VYLDGDFDLILERM------KARKGHFMPASLLDSQFATLEEPGADEDVLTI-D-IDQP  145 (161)
T ss_pred             HHHHHHHHHHhccCCCeEE--EEecCCHHHHHHHH------HhcccCCCCHHHHHHHHHHhcCCCCCCCEEEe-e-CCCC
Confidence            8888999999987766455  99999999999999      56788887655554   445667533322222 1 4678


Q ss_pred             HHHHHHHHHHHHHh
Q 023675          260 PADMVETVVSYLDE  273 (279)
Q Consensus       260 ~~e~~~~Il~~l~~  273 (279)
                      +++++.+++..++.
T Consensus       146 ~e~vv~~~~~~l~~  159 (161)
T COG3265         146 PEEVVAQALAWLKE  159 (161)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998875

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=7e-15  Score=129.36  Aligned_cols=142  Identities=20%  Similarity=0.184  Sum_probs=95.5

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC-----ccEEEEcCeeccc------c
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRH------G  144 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-----~G~i~ldgd~i~~------~  144 (279)
                      .++++++++.|..     +.||++.+|++++|+|+||||||||+++|+|++ .|.     +|.|+++|.++..      .
T Consensus         4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~~~~~~G~v~~~g~~~~~~~~~~~~   82 (251)
T PRK14249          4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN-DIVSGARLEGAVLLDNENIYSPNLDVVN   82 (251)
T ss_pred             eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CccccCCcccEEEECCEEccccccChHH
Confidence            4677787777754     348999999999999999999999999999998 665     6999999987632      1


Q ss_pred             cccCCCCCcc-------cHHHHHHH------------HHH-HHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675          145 LNRDLSFKAE-------DRVENIRR------------IGE-VAKLFADAGV--------ICIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       145 ~~~~~~~~~~-------~~~~~~~~------------v~~-~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ....++|.++       ...+.+..            ..+ +...+...++        ......+++++++| .+++++
T Consensus        83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral  162 (251)
T PRK14249         83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL  162 (251)
T ss_pred             hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            1111221111       11111100            000 1111111221        12344588899888 899999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +.+|++  +++|||+..++......+++.+
T Consensus       163 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l  190 (251)
T PRK14249        163 AIEPEV--ILMDEPCSALDPVSTMRIEELM  190 (251)
T ss_pred             hcCCCE--EEEeCCCccCCHHHHHHHHHHH
Confidence            999998  9999999999988877655543

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.60  E-value=6.4e-15  Score=127.61  Aligned_cols=142  Identities=19%  Similarity=0.249  Sum_probs=94.2

Q ss_pred             eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc---CCccEEEEcCeecccc-cccC
Q 023675           82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHG-LNRD  148 (279)
Q Consensus        82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~---~~~G~i~ldgd~i~~~-~~~~  148 (279)
                      +.|+++++.|+.         +.||++++|++++|+|+||||||||+++|+|.+ .   |.+|.|+++|.++... ....
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~-~~~~~~~G~i~~~g~~~~~~~~~~~   82 (226)
T cd03234           4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV-EGGGTTSGQILFNGQPRKPDQFQKC   82 (226)
T ss_pred             ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc-CCCCCCceEEEECCEECChHHhccc
Confidence            345666666643         339999999999999999999999999999999 6   8899999999876311 1111


Q ss_pred             CCCCcc--------cHHHHHHHH---------------HHHHH-HHHhCCcch----hcccCChHHHHH-HHHHHhCCCC
Q 023675          149 LSFKAE--------DRVENIRRI---------------GEVAK-LFADAGVIC----IACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       149 ~~~~~~--------~~~~~~~~v---------------~~~~~-~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      +++.++        ...+.+...               ..... .+...++..    ....+|+++++| .++++++.+|
T Consensus        83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p  162 (226)
T cd03234          83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP  162 (226)
T ss_pred             EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence            111111        111111100               00011 122222211    234578888888 8999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHHh
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++  +++|||+..++....+.+.+.+.
T Consensus       163 ~i--lllDEP~~gLD~~~~~~~~~~l~  187 (226)
T cd03234         163 KV--LILDEPTSGLDSFTALNLVSTLS  187 (226)
T ss_pred             CE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence            88  99999999999988777655443

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=7e-15  Score=129.34  Aligned_cols=142  Identities=20%  Similarity=0.222  Sum_probs=93.9

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-----CccEEEEcCeeccc------cc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH------GL  145 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-----~~G~i~ldgd~i~~------~~  145 (279)
                      ++++++++.|.+     +.||++++|++++|+|+||||||||+++|+|.+ .|     .+|.|+++|.++..      ..
T Consensus         5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   83 (252)
T PRK14272          5 LSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH-DLTPGARVTGRILLDGQDIYGPRVDPVAM   83 (252)
T ss_pred             EEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCcCCCCceeEEECCEEcccCccCHHHh
Confidence            456677666653     348999999999999999999999999999998 54     37999999987632      11


Q ss_pred             ccCCCCCcc--------cHHHHHHH------------HHH-HHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675          146 NRDLSFKAE--------DRVENIRR------------IGE-VAKLFADAGV--------ICIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       146 ~~~~~~~~~--------~~~~~~~~------------v~~-~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ...++|.++        ...+.+..            ..+ ....+...+.        ...+..+|+++++| .+++++
T Consensus        84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  163 (252)
T PRK14272         84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL  163 (252)
T ss_pred             hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence            111222111        11111110            000 0111111111        12344588899888 899999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +.+|++  +++|||+..++....+.+++.++
T Consensus       164 ~~~p~l--lllDEP~~~LD~~~~~~l~~~l~  192 (252)
T PRK14272        164 AVEPEI--LLMDEPTSALDPASTARIEDLMT  192 (252)
T ss_pred             hcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            999998  99999999999887766555433

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.60  E-value=6.7e-15  Score=127.22  Aligned_cols=130  Identities=16%  Similarity=0.228  Sum_probs=86.8

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe----ecccc--------cccCCCCCcccH-----
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD----NCRHG--------LNRDLSFKAEDR-----  156 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd----~i~~~--------~~~~~~~~~~~~-----  156 (279)
                      +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|++++.    ++...        ....++|.+++.     
T Consensus        26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~  104 (224)
T TIGR02324        26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYANY-LPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPR  104 (224)
T ss_pred             cceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCC
Confidence            348999999999999999999999999999999 899999999842    32100        001112111110     


Q ss_pred             ---HHHHH-----------H-HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675          157 ---VENIR-----------R-IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (279)
Q Consensus       157 ---~~~~~-----------~-v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~  215 (279)
                         .+.+.           . .......+...++.     ..+..+|+++++| .++++++.+|++  +++|||+..++.
T Consensus       105 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~~LD~  182 (224)
T TIGR02324       105 VSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPI--LLLDEPTASLDA  182 (224)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccCCH
Confidence               00000           0 01112222333332     1345588888888 899999999998  999999999998


Q ss_pred             cChhhHHHHHh
Q 023675          216 RDPKGLYKLAR  226 (279)
Q Consensus       216 R~~~~l~~~~~  226 (279)
                      ...+.+.+.++
T Consensus       183 ~~~~~l~~~l~  193 (224)
T TIGR02324       183 ANRQVVVELIA  193 (224)
T ss_pred             HHHHHHHHHHH
Confidence            88777665443

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.60  E-value=5.5e-15  Score=142.75  Aligned_cols=141  Identities=18%  Similarity=0.150  Sum_probs=98.8

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS  150 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~  150 (279)
                      .+++++++++|.+     +.||++.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++...     ....++
T Consensus         5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~   83 (510)
T PRK09700          5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH-EPTKGTITINNINYNKLDHKLAAQLGIG   83 (510)
T ss_pred             eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc-CCCccEEEECCEECCCCCHHHHHHCCeE
Confidence            3677888877754     449999999999999999999999999999999 89999999999876321     011122


Q ss_pred             CCccc--------HHHHHH-------------------HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675          151 FKAED--------RVENIR-------------------RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       151 ~~~~~--------~~~~~~-------------------~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      |.+++        ..+.+.                   ....+..++...++.    ..+..+|+++++| .++++++.+
T Consensus        84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~  163 (510)
T PRK09700         84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD  163 (510)
T ss_pred             EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence            21111        000000                   001122223333332    2345688999999 899999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      |++  ++||||++.++......+++.
T Consensus       164 p~l--llLDEPt~~LD~~~~~~l~~~  187 (510)
T PRK09700        164 AKV--IIMDEPTSSLTNKEVDYLFLI  187 (510)
T ss_pred             CCE--EEEeCCCCCCCHHHHHHHHHH
Confidence            998  999999999999887776544

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=7.6e-15  Score=129.81  Aligned_cols=144  Identities=19%  Similarity=0.128  Sum_probs=97.0

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc--C--CccEEEEcCeeccc------cc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--R--GKLTYILDGDNCRH------GL  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~--~~G~i~ldgd~i~~------~~  145 (279)
                      .++++++++.|..     +.+|++.+|++++|+|+||||||||+++|+|++..  |  .+|.|+++|.++..      ..
T Consensus         7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   86 (259)
T PRK14260          7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL   86 (259)
T ss_pred             eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence            5778888888763     34999999999999999999999999999999832  2  48999999987632      11


Q ss_pred             ccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675          146 NRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       146 ~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      ...+++.+++       ..+.+..            . ..+...+...++        ......+++++++| .++++++
T Consensus        87 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  166 (259)
T PRK14260         87 RRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA  166 (259)
T ss_pred             hhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            1112222111       1111110            0 011122222222        11234578888888 9999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      .+|++  +++|||+..++......+++.+.
T Consensus       167 ~~p~l--llLDEPt~~LD~~~~~~l~~~l~  194 (259)
T PRK14260        167 IKPKV--LLMDEPCSALDPIATMKVEELIH  194 (259)
T ss_pred             cCCCE--EEEcCCCccCCHHHHHHHHHHHH
Confidence            99998  99999999999887776655443

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.60  E-value=4.7e-15  Score=142.50  Aligned_cols=140  Identities=20%  Similarity=0.176  Sum_probs=97.5

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK  152 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~  152 (279)
                      +++++++++|..     +.||++++|++++|+|+||||||||+++|+|.+ .|++|.|.++|.++...    ....+++.
T Consensus         4 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~-~p~~G~i~~~~~~~~~~~~~~~~~~i~~~   82 (490)
T PRK10938          4 LQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL-PLLSGERQSQFSHITRLSFEQLQKLVSDE   82 (490)
T ss_pred             EEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCceEEECCcccccCCHHHHHHHhcee
Confidence            677788888854     349999999999999999999999999999999 89999999988765311    01111221


Q ss_pred             ccc----------------HHHHHH----HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675          153 AED----------------RVENIR----RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (279)
Q Consensus       153 ~~~----------------~~~~~~----~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld  207 (279)
                      ++.                ..+.+.    ....+..++...++.    ..+..+|+++++| .++++++.+|++  ++||
T Consensus        83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLD  160 (490)
T PRK10938         83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL--LILD  160 (490)
T ss_pred             ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEc
Confidence            111                001100    001122223333332    2345688999999 999999999998  9999


Q ss_pred             CCccchhccChhhHHHH
Q 023675          208 VPLQVCEARDPKGLYKL  224 (279)
Q Consensus       208 ~p~~~l~~R~~~~l~~~  224 (279)
                      ||+..++....+.+.+.
T Consensus       161 EPt~~LD~~~~~~l~~~  177 (490)
T PRK10938        161 EPFDGLDVASRQQLAEL  177 (490)
T ss_pred             CCcccCCHHHHHHHHHH
Confidence            99999999887765543

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.60  E-value=6.1e-15  Score=130.28  Aligned_cols=146  Identities=18%  Similarity=0.140  Sum_probs=98.9

Q ss_pred             CCCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cc
Q 023675           78 KSTNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LN  146 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~  146 (279)
                      ..+.+++++++++|...       .||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    ..
T Consensus        16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~i~g~~i~~~~~~~~~   94 (257)
T cd03288          16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV-DIFDGKIVIDGIDISKLPLHTLR   94 (257)
T ss_pred             CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-CCCCCeEEECCEEhhhCCHHHHh
Confidence            34678999999998642       28999999999999999999999999999999 89999999999876421    11


Q ss_pred             cCCCCCccc-------H-----------HHHHHHHH---HHHHHHHhC--Ccc----hhcccCChHHHHH-HHHHHhCCC
Q 023675          147 RDLSFKAED-------R-----------VENIRRIG---EVAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       147 ~~~~~~~~~-------~-----------~~~~~~v~---~~~~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      ..++|.++.       .           ........   .+...+...  ++.    .....+++++++| .++++++.+
T Consensus        95 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  174 (257)
T cd03288          95 SRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK  174 (257)
T ss_pred             hhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence            111111110       0           00000000   011111110  111    1234578888888 899999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHHh
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      |++  +++|||+..++......+++.+.
T Consensus       175 p~l--lllDEPt~gLD~~~~~~l~~~l~  200 (257)
T cd03288         175 SSI--LIMDEATASIDMATENILQKVVM  200 (257)
T ss_pred             CCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence            998  99999999999887766665444

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.60  E-value=6.1e-15  Score=136.14  Aligned_cols=129  Identities=19%  Similarity=0.208  Sum_probs=90.6

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------cccCCCCCcc--------cHH
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLSFKAE--------DRV  157 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------~~~~~~~~~~--------~~~  157 (279)
                      +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...        ....++|.++        ...
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~   93 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT-RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR   93 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence            569999999999999999999999999999999 89999999999876321        1111222111        111


Q ss_pred             HHHHH----------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675          158 ENIRR----------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (279)
Q Consensus       158 ~~~~~----------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~  222 (279)
                      +.+..          ...+..++...++..    ....+|+++++| .++++++.+|++  ++||||+..++....+.++
T Consensus        94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l--llLDEPts~LD~~~~~~l~  171 (354)
T TIGR02142        94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL--LLMDEPLAALDDPRKYEIL  171 (354)
T ss_pred             HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCCCcCCCHHHHHHHH
Confidence            11110          001222333334322    334588999999 999999999998  9999999999998877655


Q ss_pred             HHH
Q 023675          223 KLA  225 (279)
Q Consensus       223 ~~~  225 (279)
                      +.+
T Consensus       172 ~~L  174 (354)
T TIGR02142       172 PYL  174 (354)
T ss_pred             HHH
Confidence            443

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.60  E-value=2e-14  Score=127.49  Aligned_cols=143  Identities=17%  Similarity=0.141  Sum_probs=96.1

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------cc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GL  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~~  145 (279)
                      .+++++++++|.+     +.||++.+|++++|+|+||||||||+++|+|++..    |.+|.|+++|.++..      ..
T Consensus        10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   89 (264)
T PRK14243         10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV   89 (264)
T ss_pred             EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence            4778888888864     34999999999999999999999999999998732    478999999987631      01


Q ss_pred             ccCCCCCcc-------cHHHHHHH-----------HHHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCCC
Q 023675          146 NRDLSFKAE-------DRVENIRR-----------IGEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       146 ~~~~~~~~~-------~~~~~~~~-----------v~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      ...++|.++       ...+.+..           .......+...+.        ...+..+|+++++| .++++++.+
T Consensus        90 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~  169 (264)
T PRK14243         90 RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQ  169 (264)
T ss_pred             hhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            111121111       11111110           0001111122222        11234588888888 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      |++  ++||||+..++......+.+.+
T Consensus       170 p~l--llLDEPt~~LD~~~~~~l~~~L  194 (264)
T PRK14243        170 PEV--ILMDEPCSALDPISTLRIEELM  194 (264)
T ss_pred             CCE--EEEeCCCccCCHHHHHHHHHHH
Confidence            998  9999999999998877665543

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=1.2e-14  Score=131.63  Aligned_cols=145  Identities=20%  Similarity=0.174  Sum_probs=98.5

Q ss_pred             CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeecccc------
Q 023675           80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------  144 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~~------  144 (279)
                      ..+.++++++.|.+     +.||++.+|++++|+|+||||||||+++|+|++..    |.+|.|+++|.++...      
T Consensus        44 ~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~  123 (305)
T PRK14264         44 AKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE  123 (305)
T ss_pred             ceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence            45889999988864     34999999999999999999999999999999842    6899999999876320      


Q ss_pred             cccCCCCCcccH-------HHHHHH-------------------------HHHHHHHHHhCCc--------chhcccCCh
Q 023675          145 LNRDLSFKAEDR-------VENIRR-------------------------IGEVAKLFADAGV--------ICIACLISP  184 (279)
Q Consensus       145 ~~~~~~~~~~~~-------~~~~~~-------------------------v~~~~~~~~~~~~--------~~i~~~~~~  184 (279)
                      +...++|.++..       .+.+..                         ...+..++...++        ......+++
T Consensus       124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  203 (305)
T PRK14264        124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG  203 (305)
T ss_pred             HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence            111222222211       111100                         0001111111222        112345888


Q ss_pred             HHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          185 YRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       185 ~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++++| .++++++.+|++  ++||||+..++....+.+.+.++
T Consensus       204 Gq~qrv~LAraL~~~p~l--LLLDEPtsgLD~~~~~~l~~~L~  244 (305)
T PRK14264        204 GQQQRLCIARCLAVDPEV--ILMDEPASALDPIATSKIEDLIE  244 (305)
T ss_pred             HHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            88888 899999999998  99999999999887766555443

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.59  E-value=1.2e-14  Score=127.92  Aligned_cols=143  Identities=15%  Similarity=0.054  Sum_probs=96.7

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcc-ccCCccEEEEcCeeccccc----c-cCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL----N-RDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l-~~~~~G~i~ldgd~i~~~~----~-~~~  149 (279)
                      .++++++++.|.+     +.+|++++|++++|+|+||||||||+++|+|+. ..|.+|.|+++|.++...-    . ..+
T Consensus         7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   86 (252)
T CHL00131          7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI   86 (252)
T ss_pred             eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence            4778888887764     348999999999999999999999999999973 1688999999998764210    0 011


Q ss_pred             CCCccc--------HHHHHH-------------------HHHHHHHHHHhCCcc-----hhcc-cCChHHHHH-HHHHHh
Q 023675          150 SFKAED--------RVENIR-------------------RIGEVAKLFADAGVI-----CIAC-LISPYRKDR-DACRSM  195 (279)
Q Consensus       150 ~~~~~~--------~~~~~~-------------------~v~~~~~~~~~~~~~-----~i~~-~~~~~~~~r-~~ar~l  195 (279)
                      .+.++.        ....+.                   ....+...+...++.     .... .+|+++++| .+++++
T Consensus        87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al  166 (252)
T CHL00131         87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMA  166 (252)
T ss_pred             EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHH
Confidence            111110        011100                   001112223333332     1222 488888888 899999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +.+|++  +++|||+..++....+.+++.+
T Consensus       167 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l  194 (252)
T CHL00131        167 LLDSEL--AILDETDSGLDIDALKIIAEGI  194 (252)
T ss_pred             HcCCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence            999998  9999999999998877765543

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.59  E-value=7.3e-15  Score=128.10  Aligned_cols=140  Identities=20%  Similarity=0.242  Sum_probs=94.0

Q ss_pred             Eeecceeec----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc---
Q 023675           84 WHKNSVDKR----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE---  154 (279)
Q Consensus        84 ~~~~~~~~~----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~---  154 (279)
                      ++++++.|.    .+.+|++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...  ....+++.++   
T Consensus         3 ~~~l~~~~~~~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~-~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~   81 (235)
T cd03299           3 VENLSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI-KPDSGKILLNGKDITNLPPEKRDISYVPQNYA   81 (235)
T ss_pred             eEeEEEEeCCceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcCcCChhHcCEEEEeecCc
Confidence            445555553    3458999999999999999999999999999999 89999999999876421  0111111111   


Q ss_pred             -----cHHHHHH------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675          155 -----DRVENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (279)
Q Consensus       155 -----~~~~~~~------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~  212 (279)
                           ...+.+.            ...++..++...++..    .+..+|+++++| .++++++.+|++  +++|||+..
T Consensus        82 ~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~g  159 (235)
T cd03299          82 LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI--LLLDEPFSA  159 (235)
T ss_pred             cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE--EEECCCccc
Confidence                 1111111            0011122222333322    234578888888 899999999998  999999999


Q ss_pred             hhccChhhHHHHHh
Q 023675          213 CEARDPKGLYKLAR  226 (279)
Q Consensus       213 l~~R~~~~l~~~~~  226 (279)
                      ++....+.+.+.++
T Consensus       160 LD~~~~~~l~~~l~  173 (235)
T cd03299         160 LDVRTKEKLREELK  173 (235)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99888776655433

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=8e-15  Score=129.16  Aligned_cols=143  Identities=19%  Similarity=0.176  Sum_probs=95.6

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cC---CccEEEEcCeecccc------c
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRHG------L  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~---~~G~i~ldgd~i~~~------~  145 (279)
                      .|+++++++.|.+     +.||++.+|++++|+|+||||||||+++|+|++. .|   .+|.|.++|.++...      .
T Consensus         6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   85 (253)
T PRK14261          6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVAL   85 (253)
T ss_pred             eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhh
Confidence            4778888888864     3489999999999999999999999999999873 13   489999999876421      1


Q ss_pred             ccCCCCCccc-------HHHHHH------------HH-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675          146 NRDLSFKAED-------RVENIR------------RI-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       146 ~~~~~~~~~~-------~~~~~~------------~v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      ...++|.+++       ..+.+.            .. ..+...+...++        ......+|+++++| .++++++
T Consensus        86 ~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  165 (253)
T PRK14261         86 RRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA  165 (253)
T ss_pred             hceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh
Confidence            1112221111       001100            00 011111112221        12344588888888 8999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .+|++  +++|||+..++....+.+.+.+
T Consensus       166 ~~p~l--llLDEP~~gLD~~~~~~l~~~l  192 (253)
T PRK14261        166 VNPEV--ILMDEPCSALDPIATAKIEDLI  192 (253)
T ss_pred             cCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence            99998  9999999999998877655443

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.59  E-value=6.7e-15  Score=137.45  Aligned_cols=132  Identities=18%  Similarity=0.214  Sum_probs=92.9

Q ss_pred             ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c----ccCCCCCccc-------
Q 023675           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L----NRDLSFKAED-------  155 (279)
Q Consensus        91 ~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~----~~~~~~~~~~-------  155 (279)
                      ..++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    +    ...++|.++.       
T Consensus        43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~-~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~  121 (400)
T PRK10070         43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-EPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM  121 (400)
T ss_pred             EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence            345669999999999999999999999999999999 89999999999886421    0    1122222211       


Q ss_pred             -HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675          156 -RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (279)
Q Consensus       156 -~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~  217 (279)
                       ..+.+..            ...+..++...++..    ....+|+++++| .++++++.+|++  ++||||++.++...
T Consensus       122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~i--LLLDEPts~LD~~~  199 (400)
T PRK10070        122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDI--LLMDEAFSALDPLI  199 (400)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEEECCCccCCHHH
Confidence             1111110            011222333333322    345688999999 999999999998  99999999999988


Q ss_pred             hhhHHHHH
Q 023675          218 PKGLYKLA  225 (279)
Q Consensus       218 ~~~l~~~~  225 (279)
                      .+.+++.+
T Consensus       200 r~~l~~~L  207 (400)
T PRK10070        200 RTEMQDEL  207 (400)
T ss_pred             HHHHHHHH
Confidence            77655543

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=1.5e-14  Score=129.10  Aligned_cols=145  Identities=19%  Similarity=0.133  Sum_probs=97.8

Q ss_pred             CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-C---CccEEEEcCeeccc------c
Q 023675           80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------G  144 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~---~~G~i~ldgd~i~~------~  144 (279)
                      ..++++++++.|..     +.+|++.+|++++|+|+||||||||+++|+|++.. |   .+|.|.++|.++..      .
T Consensus        19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~   98 (274)
T PRK14265         19 SVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK   98 (274)
T ss_pred             ceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHH
Confidence            35788888888864     34999999999999999999999999999999832 2   58999999987631      1


Q ss_pred             cccCCCCCccc-------HHHHHHHH-----------HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675          145 LNRDLSFKAED-------RVENIRRI-----------GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       145 ~~~~~~~~~~~-------~~~~~~~v-----------~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      ....++|.+++       ..+.+...           ..+...+...++        ......+++++++| .++++++.
T Consensus        99 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~  178 (274)
T PRK14265         99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM  178 (274)
T ss_pred             HhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh
Confidence            11112222111       11111100           001111112221        11234578889888 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +|++  ++||||+..++......+++.+.
T Consensus       179 ~p~l--llLDEPt~~LD~~~~~~l~~~L~  205 (274)
T PRK14265        179 KPDV--LLMDEPCSALDPISTRQVEELCL  205 (274)
T ss_pred             CCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            9998  99999999999988777665443

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.59  E-value=1.6e-14  Score=123.13  Aligned_cols=137  Identities=20%  Similarity=0.224  Sum_probs=88.6

Q ss_pred             EEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---cc--cc-
Q 023675           83 LWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HG--LN-  146 (279)
Q Consensus        83 ~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~~--~~-  146 (279)
                      ++++++++|..          +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|. +.   +.  +. 
T Consensus         2 ~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-~~~~G~i~~~g~-i~~~~q~~~l~~   79 (204)
T cd03250           2 SVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-EKLSGSVSVPGS-IAYVSQEPWIQN   79 (204)
T ss_pred             EEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCCeEEEcCE-EEEEecCchhcc
Confidence            45566666643          338999999999999999999999999999999 899999999982 21   00  00 


Q ss_pred             ----cCCCCCcccHHHHHHHHHHH---HHHHHhC--C----cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675          147 ----RDLSFKAEDRVENIRRIGEV---AKLFADA--G----VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (279)
Q Consensus       147 ----~~~~~~~~~~~~~~~~v~~~---~~~~~~~--~----~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~  212 (279)
                          ..+.+.............+.   ...+...  +    .......+++++++| .++++++.+|++  +++|||++.
T Consensus        80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l--lllDEP~~~  157 (204)
T cd03250          80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI--YLLDDPLSA  157 (204)
T ss_pred             CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCcccc
Confidence                00111100000011111100   0111110  1    111234578888888 999999999998  999999999


Q ss_pred             hhccChhhHHH
Q 023675          213 CEARDPKGLYK  223 (279)
Q Consensus       213 l~~R~~~~l~~  223 (279)
                      ++....+.+++
T Consensus       158 LD~~~~~~l~~  168 (204)
T cd03250         158 VDAHVGRHIFE  168 (204)
T ss_pred             CCHHHHHHHHH
Confidence            99887666654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.59  E-value=1.1e-14  Score=128.06  Aligned_cols=144  Identities=18%  Similarity=0.145  Sum_probs=96.3

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cC---CccEEEEcCeeccc------cc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRH------GL  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~---~~G~i~ldgd~i~~------~~  145 (279)
                      .+++++++++|.+     +.||++++|++++|+|+||||||||+++|+|.+. .|   .+|.|+++|.++..      ..
T Consensus         5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~   84 (252)
T PRK14239          5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL   84 (252)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence            4678888888864     3389999999999999999999999999999852 35   48999999987631      01


Q ss_pred             ccCCCCCcc-------cHHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675          146 NRDLSFKAE-------DRVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       146 ~~~~~~~~~-------~~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      ...++|.++       ...+.+..            . ..+...+...++        ......+|+++++| .++++++
T Consensus        85 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  164 (252)
T PRK14239         85 RKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA  164 (252)
T ss_pred             hhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence            111222111       11111110            0 001111222221        11234578888888 8999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      .+|++  +++|||+..++......+++.+.
T Consensus       165 ~~p~l--lllDEPt~~LD~~~~~~l~~~l~  192 (252)
T PRK14239        165 TSPKI--ILLDEPTSALDPISAGKIEETLL  192 (252)
T ss_pred             cCCCE--EEEcCCccccCHHHHHHHHHHHH
Confidence            99988  99999999999888776655443

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=1.2e-14  Score=127.82  Aligned_cols=143  Identities=20%  Similarity=0.167  Sum_probs=95.5

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc--cC--CccEEEEcCeecccc------cc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WR--GKLTYILDGDNCRHG------LN  146 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~--~~--~~G~i~ldgd~i~~~------~~  146 (279)
                      ++++++++.|.+     +.||++.+|++++|+|+||||||||+++|+|+..  .+  .+|.|.++|.++...      ..
T Consensus         4 l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~   83 (250)
T PRK14245          4 IDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELR   83 (250)
T ss_pred             EEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHh
Confidence            566777777654     3489999999999999999999999999999731  33  589999999876421      11


Q ss_pred             cCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHhCC
Q 023675          147 RDLSFKAED-------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       147 ~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      ..++|.+++       ..+.+..            . ..+...+...++.        .....+|+++++| .++++++.
T Consensus        84 ~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  163 (250)
T PRK14245         84 KNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV  163 (250)
T ss_pred             hheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence            112222111       1111110            0 0111222223321        1234588899888 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +|++  ++||||+..++....+.+.+.++
T Consensus       164 ~p~l--llLDEPt~~LD~~~~~~l~~~l~  190 (250)
T PRK14245        164 SPSV--LLMDEPASALDPISTAKVEELIH  190 (250)
T ss_pred             CCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            9998  99999999999988777655443

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.59  E-value=1.3e-14  Score=131.99  Aligned_cols=129  Identities=20%  Similarity=0.266  Sum_probs=88.7

Q ss_pred             eecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c---ccCC---------CCCc
Q 023675           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L---NRDL---------SFKA  153 (279)
Q Consensus        90 ~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~---~~~~---------~~~~  153 (279)
                      .+.++.||++++|++++|||.|||||||++.+|.+++ .+ .|.|+|+|.++...    +   +..+         ++++
T Consensus       301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~-~s-~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsP  378 (534)
T COG4172         301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PS-QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP  378 (534)
T ss_pred             EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc-Cc-CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCc
Confidence            3335559999999999999999999999999999998 44 49999999988411    1   0000         0111


Q ss_pred             c---------cH------HHHHHHHHHHHHHHHhCCcch-----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675          154 E---------DR------VENIRRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (279)
Q Consensus       154 ~---------~~------~~~~~~v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~  212 (279)
                      .         .+      ...-.+...+...+.+.|+-.     +..-.++++++| +++|+++-+|+|  |+||||++.
T Consensus       379 RmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~--i~LDEPTSA  456 (534)
T COG4172         379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPEL--ILLDEPTSA  456 (534)
T ss_pred             ccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcE--EEecCCchH
Confidence            1         00      000111222333344444432     444578889998 999999999999  999999999


Q ss_pred             hhccChhhHH
Q 023675          213 CEARDPKGLY  222 (279)
Q Consensus       213 l~~R~~~~l~  222 (279)
                      ++.-.+..+.
T Consensus       457 LD~SVQaQvv  466 (534)
T COG4172         457 LDRSVQAQVL  466 (534)
T ss_pred             hhHHHHHHHH
Confidence            9988876643

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.59  E-value=8.9e-15  Score=141.13  Aligned_cols=142  Identities=15%  Similarity=0.179  Sum_probs=97.6

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEcCeecccc-----cccCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHG-----LNRDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ldgd~i~~~-----~~~~~  149 (279)
                      .+++++++++|.+     +.||++.+|++++|+|+||||||||+++|+|++.. |++|.|+++|.++...     ....+
T Consensus         5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   84 (506)
T PRK13549          5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI   84 (506)
T ss_pred             eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe
Confidence            3677888887753     34999999999999999999999999999999832 3799999999876321     01112


Q ss_pred             CCCcccH--------HHHH--------------HH-HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCc
Q 023675          150 SFKAEDR--------VENI--------------RR-IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDF  201 (279)
Q Consensus       150 ~~~~~~~--------~~~~--------------~~-v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~  201 (279)
                      +|.+++.        .+.+              .. ...+..++...++.    ..+..+|+++++| .++++++.+|++
T Consensus        85 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  164 (506)
T PRK13549         85 AIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL  164 (506)
T ss_pred             EEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            2211110        0000              00 01122223333332    2345688999999 999999999998


Q ss_pred             cEEEEeCCccchhccChhhHHHH
Q 023675          202 IEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       202 i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                        ++||||++.++......+++.
T Consensus       165 --llLDEPt~~LD~~~~~~l~~~  185 (506)
T PRK13549        165 --LILDEPTASLTESETAVLLDI  185 (506)
T ss_pred             --EEEeCCCCCCCHHHHHHHHHH
Confidence              999999999998887765543

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=1.2e-14  Score=127.61  Aligned_cols=141  Identities=20%  Similarity=0.162  Sum_probs=93.3

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-----CccEEEEcCeeccc-----ccc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH-----GLN  146 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-----~~G~i~ldgd~i~~-----~~~  146 (279)
                      ++++++++.|..     +.||++.+|++++|+|+||||||||+++|+|.+ .|     .+|.++++|.++..     ...
T Consensus         4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~~~~~~G~v~~~g~~~~~~~~~~~~~   82 (249)
T PRK14253          4 FNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMN-DLIEGVKITGKLTMDGEDIYGNIDVADLR   82 (249)
T ss_pred             EEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhc-ccccCCCCceEEEECCEEcccccchHHHH
Confidence            566777777653     448999999999999999999999999999998 54     58999999977631     111


Q ss_pred             cCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675          147 RDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       147 ~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      ..++|.+++       ..+.+..            . ..+...+...++        ......+++++++| .++++++.
T Consensus        83 ~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  162 (249)
T PRK14253         83 IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM  162 (249)
T ss_pred             hheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence            112222111       1111110            0 001111111221        11234578888888 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHH
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +|++  +++|||+..++......+++.+
T Consensus       163 ~p~l--lllDEP~~~LD~~~~~~l~~~l  188 (249)
T PRK14253        163 EPDV--ILMDEPTSALDPIATHKIEELM  188 (249)
T ss_pred             CCCE--EEEeCCCccCCHHHHHHHHHHH
Confidence            9998  9999999999988776655443

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.58  E-value=2.3e-14  Score=124.57  Aligned_cols=129  Identities=24%  Similarity=0.177  Sum_probs=88.7

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc------ccCCCCCc-ccHHHHHHH----
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLSFKA-EDRVENIRR----  162 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~------~~~~~~~~-~~~~~~~~~----  162 (279)
                      +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...-      .....+.+ ....+.+..    
T Consensus         3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~   81 (230)
T TIGR01184         3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA-QPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR   81 (230)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence            458899999999999999999999999999999 899999999998764210      00000000 011111100    


Q ss_pred             ----------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          163 ----------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       163 ----------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                                ...+...+...++..    ....+|+++++| .++++++.+|++  +++|||+..++....+.+.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~gLD~~~~~~l~~~l  157 (230)
T TIGR01184        82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKV--LLLDEPFGALDALTRGNLQEEL  157 (230)
T ss_pred             cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCCCcCCCHHHHHHHHHHH
Confidence                      001122233333322    334588899998 899999999998  9999999999988877655433

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=2.8e-14  Score=125.53  Aligned_cols=142  Identities=18%  Similarity=0.139  Sum_probs=93.6

Q ss_pred             EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeecccc------ccc
Q 023675           83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------LNR  147 (279)
Q Consensus        83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~~------~~~  147 (279)
                      +++++++.|.     .+.+|++.+|++++|+|+||||||||+++|+|.+..    |.+|.|.++|.++...      ...
T Consensus         7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~   86 (251)
T PRK14244          7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRA   86 (251)
T ss_pred             EeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhh
Confidence            3455555554     344999999999999999999999999999999731    4699999999876311      111


Q ss_pred             CCCCCcc-------cHHHHHHH-------------H-HHHHHHHHhCCcch--------hcccCChHHHHH-HHHHHhCC
Q 023675          148 DLSFKAE-------DRVENIRR-------------I-GEVAKLFADAGVIC--------IACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       148 ~~~~~~~-------~~~~~~~~-------------v-~~~~~~~~~~~~~~--------i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      .++|.++       ...+.+..             . ..+...+...++..        .+..+++++++| .++++++.
T Consensus        87 ~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~  166 (251)
T PRK14244         87 KVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAV  166 (251)
T ss_pred             hEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhc
Confidence            1222111       11111110             0 11122233334321        234578888888 89999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +|++  +++|||+..++......+++.+.
T Consensus       167 ~p~l--lllDEPt~~LD~~~~~~l~~~l~  193 (251)
T PRK14244        167 KPTM--LLMDEPCSALDPVATNVIENLIQ  193 (251)
T ss_pred             CCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            9988  99999999999887766555443

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.58  E-value=2.8e-15  Score=133.56  Aligned_cols=141  Identities=21%  Similarity=0.162  Sum_probs=93.6

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC--------ccEEEEcCeecccc----
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--------KLTYILDGDNCRHG----  144 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~--------~G~i~ldgd~i~~~----  144 (279)
                      +++++++++|..     +.||++.+|++++|+|+||||||||+++|+|++ .|.        +|.|.++|.++...    
T Consensus         2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~-~p~~~~~~~~~~G~i~~~g~~~~~~~~~~   80 (272)
T PRK13547          2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL-TGGGAPRGARVTGDVTLNGEPLAAIDAPR   80 (272)
T ss_pred             eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCcccccccCCceEEEECCEEcccCCHHH
Confidence            456677766653     449999999999999999999999999999999 776        89999999876321    


Q ss_pred             cccCCCCCc--------ccHHHHHHH---------------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHh
Q 023675          145 LNRDLSFKA--------EDRVENIRR---------------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSM  195 (279)
Q Consensus       145 ~~~~~~~~~--------~~~~~~~~~---------------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l  195 (279)
                      ....+++.+        ....+.+..               . ......+...++..    ....+|+++++| .+++++
T Consensus        81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral  160 (272)
T PRK13547         81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL  160 (272)
T ss_pred             HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence            000011100        011111100               0 01111222223321    244578889888 889999


Q ss_pred             C---------CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          196 L---------PEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       196 ~---------~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +         .+|++  ++||||+..++....+.+++.+
T Consensus       161 ~~~~~~~~~~~~p~l--llLDEPt~~LD~~~~~~l~~~l  197 (272)
T PRK13547        161 AQLWPPHDAAQPPRY--LLLDEPTAALDLAHQHRLLDTV  197 (272)
T ss_pred             hccccccccCCCCCE--EEEcCccccCCHHHHHHHHHHH
Confidence            9         47888  9999999999998877765543

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.58  E-value=1.1e-14  Score=141.26  Aligned_cols=142  Identities=18%  Similarity=0.215  Sum_probs=98.7

Q ss_pred             CeEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-----CccEEEEcCeecccc--
Q 023675           81 NILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRHG--  144 (279)
Q Consensus        81 ~i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-----~~G~i~ldgd~i~~~--  144 (279)
                      .+++++++++|.+         +.||++.+|++++|+|+||||||||+++|+|.+ .|     .+|.|.++|.++...  
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~-~~~~~~~~~G~i~~~g~~i~~~~~   83 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-PSPPVVYPSGDIRFHGESLLHASE   83 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC-CCCcCCccceEEEECCEecccCCH
Confidence            3677788777742         339999999999999999999999999999999 54     799999999886321  


Q ss_pred             -----c-ccCCCCCcccH----------HHHHH-------------HHHHHHHHHHhCCcc-------hhcccCChHHHH
Q 023675          145 -----L-NRDLSFKAEDR----------VENIR-------------RIGEVAKLFADAGVI-------CIACLISPYRKD  188 (279)
Q Consensus       145 -----~-~~~~~~~~~~~----------~~~~~-------------~v~~~~~~~~~~~~~-------~i~~~~~~~~~~  188 (279)
                           . ...++|.+++.          .+.+.             ....+...+...++.       ..+..+|+++++
T Consensus        84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q  163 (529)
T PRK15134         84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ  163 (529)
T ss_pred             HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence                 0 01233322211          00000             001122223333442       134568999999


Q ss_pred             H-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          189 R-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       189 r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      | .++++++.+|++  ++||||++.++......+++.+
T Consensus       164 rv~iAraL~~~p~l--lllDEPt~~LD~~~~~~l~~~l  199 (529)
T PRK15134        164 RVMIAMALLTRPEL--LIADEPTTALDVSVQAQILQLL  199 (529)
T ss_pred             HHHHHHHHhcCCCE--EEEcCCCCccCHHHHHHHHHHH
Confidence            9 999999999998  9999999999998877755443

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.58  E-value=9.8e-15  Score=144.09  Aligned_cols=142  Identities=20%  Similarity=0.189  Sum_probs=101.3

Q ss_pred             CeEEeecceeec----------------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc
Q 023675           81 NILWHKNSVDKR----------------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG  144 (279)
Q Consensus        81 ~i~~~~~~~~~~----------------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~  144 (279)
                      .++++++++.|.                ++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...
T Consensus       313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~-~p~~G~I~~~g~~i~~~  391 (623)
T PRK10261        313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV-ESQGGEIIFNGQRIDTL  391 (623)
T ss_pred             eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCcEEEECCEECCcC
Confidence            478889888884                2339999999999999999999999999999999 89999999999876321


Q ss_pred             -------cccCCCCCcccH----------HHHHH-------------HHHHHHHHHHhCCcc-----hhcccCChHHHHH
Q 023675          145 -------LNRDLSFKAEDR----------VENIR-------------RIGEVAKLFADAGVI-----CIACLISPYRKDR  189 (279)
Q Consensus       145 -------~~~~~~~~~~~~----------~~~~~-------------~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r  189 (279)
                             ....++|.+++.          .+.+.             ....+..++...++.     .....+|+++++|
T Consensus       392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR  471 (623)
T PRK10261        392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR  471 (623)
T ss_pred             CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence                   111222222210          11110             001122233334442     1345689999999


Q ss_pred             -HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          190 -DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       190 -~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                       .++++++.+|++  +++|||+..|+......+++.+
T Consensus       472 v~iAraL~~~p~l--lllDEPts~LD~~~~~~i~~ll  506 (623)
T PRK10261        472 ICIARALALNPKV--IIADEAVSALDVSIRGQIINLL  506 (623)
T ss_pred             HHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence             999999999999  9999999999998887765544

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.58  E-value=1.3e-14  Score=139.95  Aligned_cols=142  Identities=18%  Similarity=0.203  Sum_probs=98.9

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS  150 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~  150 (279)
                      .+++++++++|.+     +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...     ....++
T Consensus         4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~   82 (501)
T PRK11288          4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY-QPDAGSILIDGQEMRFASTTAALAAGVA   82 (501)
T ss_pred             eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence            3677888887754     449999999999999999999999999999999 89999999999876311     111122


Q ss_pred             CCcccH--------HHHH---------------HHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          151 FKAEDR--------VENI---------------RRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       151 ~~~~~~--------~~~~---------------~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      |.++..        .+.+               .....+...+...++.    ..+..+|+++++| .++++++.+|++ 
T Consensus        83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l-  161 (501)
T PRK11288         83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV-  161 (501)
T ss_pred             EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE-
Confidence            211110        0000               0001122223333332    2345688999999 999999999998 


Q ss_pred             EEEEeCCccchhccChhhHHHHH
Q 023675          203 EVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                       ++||||+..++....+.+++.+
T Consensus       162 -llLDEPt~~LD~~~~~~l~~~l  183 (501)
T PRK11288        162 -IAFDEPTSSLSAREIEQLFRVI  183 (501)
T ss_pred             -EEEcCCCCCCCHHHHHHHHHHH
Confidence             9999999999998877765543

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.58  E-value=1.1e-14  Score=125.45  Aligned_cols=127  Identities=17%  Similarity=0.167  Sum_probs=85.0

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------cccCCCCCcc-------cHHH
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLSFKAE-------DRVE  158 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------~~~~~~~~~~-------~~~~  158 (279)
                      +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...        ....++|.++       ...+
T Consensus        19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~   97 (218)
T cd03290          19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM-QTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEE   97 (218)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHH
Confidence            348999999999999999999999999999999 89999999999765210        0111111111       1111


Q ss_pred             HHHH-----HHHHHHHHHhCCc---------------chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675          159 NIRR-----IGEVAKLFADAGV---------------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (279)
Q Consensus       159 ~~~~-----v~~~~~~~~~~~~---------------~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~  217 (279)
                      .+..     ...........++               ......+++++++| .++++++.+|++  +++|||+..++...
T Consensus        98 nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~  175 (218)
T cd03290          98 NITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI--VFLDDPFSALDIHL  175 (218)
T ss_pred             HHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE--EEEeCCccccCHHH
Confidence            1100     0000011111111               11244688899888 999999999998  99999999999887


Q ss_pred             hhhHHH
Q 023675          218 PKGLYK  223 (279)
Q Consensus       218 ~~~l~~  223 (279)
                      .+.+++
T Consensus       176 ~~~l~~  181 (218)
T cd03290         176 SDHLMQ  181 (218)
T ss_pred             HHHHHH
Confidence            665544

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=2.4e-14  Score=126.79  Aligned_cols=143  Identities=15%  Similarity=0.140  Sum_probs=94.7

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------ccc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLN  146 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~~~  146 (279)
                      +..+...+.|.+     ..+|++++|++++|+|+||||||||+++|+|++..    +.+|.|+++|.++..      ...
T Consensus         9 ~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~   88 (261)
T PRK14263          9 MDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVR   88 (261)
T ss_pred             EEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhh
Confidence            445555555543     44999999999999999999999999999999932    279999999988632      011


Q ss_pred             cCCCCCcc-------cHHHHHHHH-----------HHHHHHHHhCCcch--------hcccCChHHHHH-HHHHHhCCCC
Q 023675          147 RDLSFKAE-------DRVENIRRI-----------GEVAKLFADAGVIC--------IACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       147 ~~~~~~~~-------~~~~~~~~v-----------~~~~~~~~~~~~~~--------i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      ..++|.++       ...+.+...           ..+...+...++..        ....+++++++| .++++++.+|
T Consensus        89 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p  168 (261)
T PRK14263         89 RYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP  168 (261)
T ss_pred             hceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            11222211       111111100           11122233333311        123478888888 8999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHHh
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++  +++|||+..++....+.+++.+.
T Consensus       169 ~l--lllDEPtsgLD~~~~~~l~~~l~  193 (261)
T PRK14263        169 EV--LLLDEPCSALDPIATRRVEELMV  193 (261)
T ss_pred             CE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            88  99999999999888777665443

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=1.5e-14  Score=127.15  Aligned_cols=143  Identities=21%  Similarity=0.190  Sum_probs=94.6

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc--c--CCccEEEEcCeecccc------cc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRHG------LN  146 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~--~--~~~G~i~ldgd~i~~~------~~  146 (279)
                      ++++++++.|.+     +.+|++.+|++++|+|+||||||||+++|+|++.  .  +++|.|+++|.++...      ..
T Consensus         4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~   83 (250)
T PRK14266          4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELR   83 (250)
T ss_pred             EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHh
Confidence            456677766653     3489999999999999999999999999999863  2  3799999999886421      11


Q ss_pred             cCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675          147 RDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       147 ~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      ..++|.+++       ..+.+..            . ..+...+...++        ...+..+|+++++| .++++++.
T Consensus        84 ~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~  163 (250)
T PRK14266         84 KKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV  163 (250)
T ss_pred             hheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence            112221111       1111110            0 001111122222        11244578888888 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +|++  +++|||+..++......+.+.+.
T Consensus       164 ~p~l--lllDEP~~gLD~~~~~~l~~~l~  190 (250)
T PRK14266        164 SPEV--ILMDEPCSALDPISTTKIEDLIH  190 (250)
T ss_pred             CCCE--EEEcCCCccCCHHHHHHHHHHHH
Confidence            9988  99999999999887766555443

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=4.5e-14  Score=125.02  Aligned_cols=144  Identities=19%  Similarity=0.092  Sum_probs=97.7

Q ss_pred             CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC-----ccEEEEcCeeccc------
Q 023675           80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRH------  143 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-----~G~i~ldgd~i~~------  143 (279)
                      ..+++++++++|..     +.||++++|++++|+|+||||||||+++|+|++ .|+     .|.|.++|.++..      
T Consensus         6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~~~g~i~~~G~i~~~g~~i~~~~~~~~   84 (261)
T PRK14258          6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN-ELESEVRVEGRVEFFNQNIYERRVNLN   84 (261)
T ss_pred             ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc-CCCCCccccceEEECCEEhhccccchH
Confidence            35788888888864     349999999999999999999999999999999 564     7999999987621      


Q ss_pred             ccccCCCCCc-------ccHHHHHHH-------------HHHHHHHHHhCCc--------chhcccCChHHHHH-HHHHH
Q 023675          144 GLNRDLSFKA-------EDRVENIRR-------------IGEVAKLFADAGV--------ICIACLISPYRKDR-DACRS  194 (279)
Q Consensus       144 ~~~~~~~~~~-------~~~~~~~~~-------------v~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~  194 (279)
                      .....++|.+       ....+.+..             ...+...+...++        ...+..+++++++| .++++
T Consensus        85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara  164 (261)
T PRK14258         85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA  164 (261)
T ss_pred             HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence            0111111111       111111110             0011112222222        11234588899888 99999


Q ss_pred             hCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       195 l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++.+|++  +++|||+..++......+++.+.
T Consensus       165 l~~~p~v--llLDEP~~~LD~~~~~~l~~~l~  194 (261)
T PRK14258        165 LAVKPKV--LLMDEPCFGLDPIASMKVESLIQ  194 (261)
T ss_pred             HhcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            9999998  99999999999887776655443

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.57  E-value=4.4e-14  Score=124.28  Aligned_cols=143  Identities=17%  Similarity=0.137  Sum_probs=95.5

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cC---CccEEEEcCeeccc------cc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRH------GL  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~---~~G~i~ldgd~i~~------~~  145 (279)
                      .++++++++.|.+     +.||++.+|++++|+|+||||||||+++|+|.+. .|   .+|+|+++|.++..      ..
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   84 (252)
T PRK14255          5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQL   84 (252)
T ss_pred             eEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHh
Confidence            4677888877764     3389999999999999999999999999999863 24   48999999987631      01


Q ss_pred             ccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675          146 NRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       146 ~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      ...++|.+++       ..+.+..            . ......+...+.        ......+|+++++| .++++++
T Consensus        85 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~  164 (252)
T PRK14255         85 RKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA  164 (252)
T ss_pred             cCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence            1112222211       1111110            0 001111111221        11234578889888 8999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .+|++  +++|||+..++....+.+.+.+
T Consensus       165 ~~p~l--lllDEPt~~LD~~~~~~l~~~l  191 (252)
T PRK14255        165 VKPDV--ILLDEPTSALDPISSTQIENML  191 (252)
T ss_pred             cCCCE--EEEcCCCccCCHHHHHHHHHHH
Confidence            99998  9999999999998877765543

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.57  E-value=1.3e-14  Score=140.22  Aligned_cols=142  Identities=13%  Similarity=0.136  Sum_probs=99.5

Q ss_pred             CeEEeecceeec---CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCC
Q 023675           81 NILWHKNSVDKR---DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFK  152 (279)
Q Consensus        81 ~i~~~~~~~~~~---~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~  152 (279)
                      .++++++++.|.   ++.||++++|++++|+|+||||||||+++|+|++ .|++|.|+++|.++...     ....++|.
T Consensus       265 ~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v  343 (510)
T PRK09700        265 VFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD-KRAGGEIRLNGKDISPRSPLDAVKKGMAYI  343 (510)
T ss_pred             EEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCEECCCCCHHHHHHCCcEEc
Confidence            478888877653   4569999999999999999999999999999999 89999999999876321     11112222


Q ss_pred             ccc-----------HHHHHH--------------------H-HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHH
Q 023675          153 AED-----------RVENIR--------------------R-IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRS  194 (279)
Q Consensus       153 ~~~-----------~~~~~~--------------------~-v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~  194 (279)
                      +++           ..+.+.                    . ...+..++...++.     ..+..+|+++++| .++++
T Consensus       344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAra  423 (510)
T PRK09700        344 TESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKW  423 (510)
T ss_pred             cCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHH
Confidence            211           000000                    0 01112223333332     2345689999999 99999


Q ss_pred             hCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       195 l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++.+|++  ++||||+..++....+.+++.+
T Consensus       424 l~~~p~l--LlLDEPt~~LD~~~~~~l~~~l  452 (510)
T PRK09700        424 LCCCPEV--IIFDEPTRGIDVGAKAEIYKVM  452 (510)
T ss_pred             HhcCCCE--EEECCCCCCcCHHHHHHHHHHH
Confidence            9999988  9999999999999877765543

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.57  E-value=1.7e-14  Score=123.98  Aligned_cols=129  Identities=20%  Similarity=0.194  Sum_probs=88.9

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------cccCCCCCcc--------cHH
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLSFKAE--------DRV  157 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------~~~~~~~~~~--------~~~  157 (279)
                      +.||++++ ++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...        ....++|.++        ...
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~   93 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE-KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVR   93 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHH
Confidence            56999999 999999999999999999999999 89999999999875310        0111111111        111


Q ss_pred             HHHHH----------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675          158 ENIRR----------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (279)
Q Consensus       158 ~~~~~----------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~  222 (279)
                      +.+..          .......+...++..    .+..+|+++++| .++++++.+|++  +++|||+..++....+.++
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~LD~~~~~~l~  171 (214)
T cd03297          94 ENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL--LLLDEPFSALDRALRLQLL  171 (214)
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccCCHHHHHHHH
Confidence            11110          011222233333322    344578888888 899999999998  9999999999998877766


Q ss_pred             HHHh
Q 023675          223 KLAR  226 (279)
Q Consensus       223 ~~~~  226 (279)
                      +.++
T Consensus       172 ~~l~  175 (214)
T cd03297         172 PELK  175 (214)
T ss_pred             HHHH
Confidence            5443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.57  E-value=1.7e-14  Score=123.70  Aligned_cols=139  Identities=19%  Similarity=0.195  Sum_probs=97.9

Q ss_pred             CCeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCC
Q 023675           80 TNILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDL  149 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~  149 (279)
                      .-|+++++.+.|..+.     |+++++|+..+|+|+||||||||++++++.+ +|++|.+.+-|....+.     ++..+
T Consensus        30 ~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~-~pssg~~~~~G~~~G~~~~~~elrk~I  108 (257)
T COG1119          30 PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH-PPSSGDVTLLGRRFGKGETIFELRKRI  108 (257)
T ss_pred             ceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc-CCCCCceeeeeeeccCCcchHHHHHHh
Confidence            4589999999998755     8999999999999999999999999999999 78899999988766421     11122


Q ss_pred             CCCcccH------------------------------HHHHHHHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHH
Q 023675          150 SFKAEDR------------------------------VENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRS  194 (279)
Q Consensus       150 ~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~  194 (279)
                      ++.....                              ......   ...++...+...    ....+|-++++| -++|+
T Consensus       109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~---a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRA  185 (257)
T COG1119         109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAA---AQWLLELLGAKHLADRPFGSLSQGEQRRVLIARA  185 (257)
T ss_pred             CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHH---HHHHHHHcchhhhccCchhhcCHhHHHHHHHHHH
Confidence            2211111                              111111   122222223322    233467777777 78999


Q ss_pred             hCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       195 l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++.+|++  ++||||+..++--....+.+.
T Consensus       186 Lv~~P~L--LiLDEP~~GLDl~~re~ll~~  213 (257)
T COG1119         186 LVKDPEL--LILDEPAQGLDLIAREQLLNR  213 (257)
T ss_pred             HhcCCCE--EEecCccccCChHHHHHHHHH
Confidence            9999998  999999999987766555543

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.57  E-value=3.1e-15  Score=159.56  Aligned_cols=144  Identities=17%  Similarity=0.162  Sum_probs=101.0

Q ss_pred             CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.|+|+|++++|...       .||++++|+.++|||++|||||||+++|.|++ . .+|.|++||.++.+.    ++.
T Consensus      1215 ~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~-~-~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271      1215 GGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL-S-TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred             CCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEcccCCHHHHHh
Confidence            4679999999999642       28999999999999999999999999999998 5 689999999998531    122


Q ss_pred             CCCCCccc-------HHHHH-----------HHHHHHH---HHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675          148 DLSFKAED-------RVENI-----------RRIGEVA---KLFAD--AGVI----CIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       148 ~~~~~~~~-------~~~~~-----------~~v~~~~---~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      .+++.+++       .+.++           ....+.+   .....  .|+.    ..+..+|+|++|| .+||++++++
T Consensus      1293 ~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271      1293 AFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred             ceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence            22221111       11111           0111111   01111  1221    2334588999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHHh
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++  ++|||+++.++....+.+.+.++
T Consensus      1373 ~I--LlLDEaTS~lD~~Te~~I~~~L~ 1397 (1490)
T TIGR01271      1373 KI--LLLDEPSAHLDPVTLQIIRKTLK 1397 (1490)
T ss_pred             CE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            98  99999999999887766665554

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.57  E-value=1.7e-14  Score=139.07  Aligned_cols=142  Identities=20%  Similarity=0.268  Sum_probs=101.0

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCccc
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAED  155 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~  155 (279)
                      .++++++++.+.++.||++.+|++++|+|+||||||||+++|+|++ .|++|.|.++|.++...     ....++|.+++
T Consensus       257 ~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~  335 (501)
T PRK10762        257 RLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL-PRTSGYVTLDGHEVVTRSPQDGLANGIVYISED  335 (501)
T ss_pred             EEEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHHHHCCCEEecCc
Confidence            4788888876677889999999999999999999999999999999 89999999999776321     11112222221


Q ss_pred             -----------HHHHHH-----------------H-HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCC
Q 023675          156 -----------RVENIR-----------------R-IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       156 -----------~~~~~~-----------------~-v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                                 ..+.+.                 . ...+..++...++.     ..+..+|+++++| .++++++.+|+
T Consensus       336 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~  415 (501)
T PRK10762        336 RKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPK  415 (501)
T ss_pred             cccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCC
Confidence                       001000                 0 01122233333331     2345688999999 99999999998


Q ss_pred             ccEEEEeCCccchhccChhhHHHHH
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +  ++||||+..++....+.+.+.+
T Consensus       416 l--llLDEPt~~LD~~~~~~l~~~l  438 (501)
T PRK10762        416 V--LILDEPTRGVDVGAKKEIYQLI  438 (501)
T ss_pred             E--EEEcCCCCCCCHhHHHHHHHHH
Confidence            8  9999999999998877655433

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.57  E-value=4.8e-15  Score=118.11  Aligned_cols=115  Identities=28%  Similarity=0.331  Sum_probs=79.0

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCCccc--------HHHH--
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFKAED--------RVEN--  159 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~~~~--------~~~~--  159 (279)
                      +.++++++|++++|+|+||||||||+++|+|.+ .+.+|.|++++.++...    ....+++.++.        ..+.  
T Consensus         3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~-~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~   81 (137)
T PF00005_consen    3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL-PPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES   81 (137)
T ss_dssp             EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS-HESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH
T ss_pred             ceEEEEcCCCEEEEEccCCCccccceeeecccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            457899999999999999999999999999999 78999999999988641    11122222221        1111  


Q ss_pred             HHHHHHHHHHHHhCCc-chhc----ccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675          160 IRRIGEVAKLFADAGV-ICIA----CLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (279)
Q Consensus       160 ~~~v~~~~~~~~~~~~-~~i~----~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~  211 (279)
                      -..+.++...+..... ...+    ..+++++++| .++++++.+|++  +++|||++
T Consensus        82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~l--lllDEPt~  137 (137)
T PF00005_consen   82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKL--LLLDEPTN  137 (137)
T ss_dssp             HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSE--EEEESTTT
T ss_pred             cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCE--EEEeCCCC
Confidence            1112222222221111 1122    5688888888 999999999988  99999974

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.56  E-value=1e-14  Score=138.52  Aligned_cols=125  Identities=25%  Similarity=0.285  Sum_probs=88.7

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc--cc----cc---------cCCCCCccc--
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--HG----LN---------RDLSFKAED--  155 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~--~~----~~---------~~~~~~~~~--  155 (279)
                      ++.||.+.+||+++|||.||||||||+++|+|++ .|.+|.|.++|.++.  ..    +.         ...++.+..  
T Consensus       308 ~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~-~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV  386 (539)
T COG1123         308 DDVSFDLREGETLGLVGESGSGKSTLARILAGLL-PPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTV  386 (539)
T ss_pred             eeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccH
Confidence            4459999999999999999999999999999999 889999999998721  00    00         001111110  


Q ss_pred             ---------------HHHHHHHHHHHHHHHHhCCcch-----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675          156 ---------------RVENIRRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (279)
Q Consensus       156 ---------------~~~~~~~v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~  214 (279)
                                     ..++.+   .+..++..-++..     ....+|++++|| .+||+++.+|++  +++|||++.++
T Consensus       387 ~~~i~epL~~~~~~~~~~~~~---rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~l--li~DEp~SaLD  461 (539)
T COG1123         387 GDILAEPLRIHGGGSGAERRA---RVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKL--LILDEPVSALD  461 (539)
T ss_pred             HHHHHhHHhhhcccchHHHHH---HHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCE--EEecCCccccC
Confidence                           011111   1333333333322     344588999999 999999999999  99999999999


Q ss_pred             ccChhhHHH
Q 023675          215 ARDPKGLYK  223 (279)
Q Consensus       215 ~R~~~~l~~  223 (279)
                      ...+..+.+
T Consensus       462 vsvqa~Vln  470 (539)
T COG1123         462 VSVQAQVLN  470 (539)
T ss_pred             HHHHHHHHH
Confidence            988776443

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=2.2e-14  Score=121.82  Aligned_cols=136  Identities=22%  Similarity=0.177  Sum_probs=88.5

Q ss_pred             eEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCeeccccc-----ccCC
Q 023675           82 ILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGL-----NRDL  149 (279)
Q Consensus        82 i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd~i~~~~-----~~~~  149 (279)
                      ++++|++++..++      .|+++++|++.+|+||||||||||++.|+|.-. ..++|.|.+||+++...-     ...+
T Consensus         4 L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~Gi   83 (251)
T COG0396           4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGI   83 (251)
T ss_pred             eEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCC
Confidence            5667777666653      499999999999999999999999999999732 678999999999985210     0111


Q ss_pred             CCCcc-----------cH---------------HHHHHHHHHHHHHHHhC---CcchhcccCChHHHHH-HHHHHhCCCC
Q 023675          150 SFKAE-----------DR---------------VENIRRIGEVAKLFADA---GVICIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       150 ~~~~~-----------~~---------------~~~~~~v~~~~~~~~~~---~~~~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      .+..+           +.               .++...+.+.+..+.-.   -...+-...|++++.| ++++.++-+|
T Consensus        84 fLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~leP  163 (251)
T COG0396          84 FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEP  163 (251)
T ss_pred             EEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCC
Confidence            11111           00               11222222222221100   0011223466778878 8888889999


Q ss_pred             CccEEEEeCCccchhccChh
Q 023675          200 DFIEVFMDVPLQVCEARDPK  219 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~  219 (279)
                      ++  .+||||.+.++--.-+
T Consensus       164 kl--~ILDE~DSGLDIdalk  181 (251)
T COG0396         164 KL--AILDEPDSGLDIDALK  181 (251)
T ss_pred             CE--EEecCCCcCccHHHHH
Confidence            99  9999999988765433

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.56  E-value=1.4e-14  Score=139.31  Aligned_cols=130  Identities=16%  Similarity=0.272  Sum_probs=89.9

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccH--------HHH
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDR--------VEN  159 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~--------~~~  159 (279)
                      ++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...     ....++|.+++.        .+.
T Consensus        15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~   93 (491)
T PRK10982         15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY-QKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDN   93 (491)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHH
Confidence            4569999999999999999999999999999999 89999999999876311     011111111110        000


Q ss_pred             H---------------HHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675          160 I---------------RRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (279)
Q Consensus       160 ~---------------~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~  219 (279)
                      +               .....+..++...++.    ..+..+|+++++| .++++++.+|++  ++||||+..++.....
T Consensus        94 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~l--llLDEPt~~LD~~~~~  171 (491)
T PRK10982         94 MWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKI--VIMDEPTSSLTEKEVN  171 (491)
T ss_pred             hhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCCCCCHHHHH
Confidence            0               0001122223333332    2345688999999 999999999998  9999999999998877


Q ss_pred             hHHHHH
Q 023675          220 GLYKLA  225 (279)
Q Consensus       220 ~l~~~~  225 (279)
                      .+++.+
T Consensus       172 ~l~~~l  177 (491)
T PRK10982        172 HLFTII  177 (491)
T ss_pred             HHHHHH
Confidence            765443

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.56  E-value=3.6e-14  Score=140.81  Aligned_cols=145  Identities=14%  Similarity=0.113  Sum_probs=96.5

Q ss_pred             CCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc
Q 023675           80 TNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA  153 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~  153 (279)
                      +.++++++++.|+++      .||++++|++++|+|+||||||||+++|+|++ ++.+|.+.+++.........+..+..
T Consensus       450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-~~~~G~i~~~~~~~i~~v~Q~~~l~~  528 (659)
T TIGR00954       450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPAKGKLFYVPQRPYMTL  528 (659)
T ss_pred             CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEeecCCCcEEEECCCCCCCC
Confidence            458999999988532      38999999999999999999999999999999 88899998875321000000000000


Q ss_pred             ccHHHHHHH-------------HHHHHHHHHhCCcch-------------hcccCChHHHHH-HHHHHhCCCCCccEEEE
Q 023675          154 EDRVENIRR-------------IGEVAKLFADAGVIC-------------IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (279)
Q Consensus       154 ~~~~~~~~~-------------v~~~~~~~~~~~~~~-------------i~~~~~~~~~~r-~~ar~l~~~~~~i~i~l  206 (279)
                      ...++.+..             ..++...+...++..             ....+|+++++| .++|+++.+|++  ++|
T Consensus       529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~i--llL  606 (659)
T TIGR00954       529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQF--AIL  606 (659)
T ss_pred             cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence            000111000             001111111112111             124688999999 999999999998  999


Q ss_pred             eCCccchhccChhhHHHHHhC
Q 023675          207 DVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       207 d~p~~~l~~R~~~~l~~~~~~  227 (279)
                      |||++.++....+.+++.+++
T Consensus       607 DEpts~LD~~~~~~l~~~l~~  627 (659)
T TIGR00954       607 DECTSAVSVDVEGYMYRLCRE  627 (659)
T ss_pred             eCCccCCCHHHHHHHHHHHHH
Confidence            999999999887777665543

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.56  E-value=1.2e-14  Score=134.90  Aligned_cols=138  Identities=20%  Similarity=0.180  Sum_probs=94.1

Q ss_pred             eecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe----ecccc----c----ccCCCCC
Q 023675           85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD----NCRHG----L----NRDLSFK  152 (279)
Q Consensus        85 ~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd----~i~~~----~----~~~~~~~  152 (279)
                      +...+....+.||++++|++++|+|+||||||||+++|+|++ .|++|.|+++|.    ++...    +    ...++|.
T Consensus        33 ~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v  111 (382)
T TIGR03415        33 ETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-PVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV  111 (382)
T ss_pred             hhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence            333444556779999999999999999999999999999999 899999999995    33110    0    0112222


Q ss_pred             cc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675          153 AE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (279)
Q Consensus       153 ~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld  207 (279)
                      ++        ...+.+..            .......+...++..    ....+|+++++| .++|+++.+|++  +++|
T Consensus       112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I--LLlD  189 (382)
T TIGR03415       112 FQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI--LLMD  189 (382)
T ss_pred             ECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEE
Confidence            11        11111110            011122233334322    344588999998 999999999998  9999


Q ss_pred             CCccchhccChhhHHHHH
Q 023675          208 VPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       208 ~p~~~l~~R~~~~l~~~~  225 (279)
                      ||++.++....+.+++.+
T Consensus       190 EPts~LD~~~r~~l~~~L  207 (382)
T TIGR03415       190 EPFSALDPLIRTQLQDEL  207 (382)
T ss_pred             CCCccCCHHHHHHHHHHH
Confidence            999999998887766543

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=2.5e-14  Score=126.40  Aligned_cols=143  Identities=20%  Similarity=0.242  Sum_probs=93.3

Q ss_pred             CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC------eeccc----c
Q 023675           80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG------DNCRH----G  144 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg------d~i~~----~  144 (279)
                      ..++++++.++|.++     .||.+.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|      .++..    .
T Consensus         9 ~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~-~~~~G~v~~~G~~~~~g~~~~~~~~~~   87 (257)
T PRK14246          9 DVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI-EIYDSKIKVDGKVLYFGKDIFQIDAIK   87 (257)
T ss_pred             hheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCcCceeEcCEEEECCcccccCCHHH
Confidence            457778888777653     38999999999999999999999999999999 78886666655      43311    0


Q ss_pred             cccCCCCCcc--------cHHHHHH------------HH-HHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHH
Q 023675          145 LNRDLSFKAE--------DRVENIR------------RI-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRS  194 (279)
Q Consensus       145 ~~~~~~~~~~--------~~~~~~~------------~v-~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~  194 (279)
                      ....++|.++        ...+.+.            .. ..+...+...++.        ..+..+++++++| .++++
T Consensus        88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara  167 (257)
T PRK14246         88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA  167 (257)
T ss_pred             HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence            0111111111        1111110            00 0111222222331        2334578888888 99999


Q ss_pred             hCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       195 l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++.+|++  +++|||+..++....+.+.+.+
T Consensus       168 l~~~P~l--lllDEPt~~LD~~~~~~l~~~l  196 (257)
T PRK14246        168 LALKPKV--LLMDEPTSMIDIVNSQAIEKLI  196 (257)
T ss_pred             HHcCCCE--EEEcCCCccCCHHHHHHHHHHH
Confidence            9999998  9999999999888776655543

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.56  E-value=2.2e-14  Score=138.22  Aligned_cols=140  Identities=14%  Similarity=0.104  Sum_probs=95.7

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC--CccEEEEcCeecccc-----cccCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRHG-----LNRDL  149 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~--~~G~i~ldgd~i~~~-----~~~~~  149 (279)
                      +++++++++|..     +.||++.+|++++|+|+||||||||+++|+|++ .|  .+|.|+++|.++...     ....+
T Consensus         2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (500)
T TIGR02633         2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASNIRDTERAGI   80 (500)
T ss_pred             EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence            456667666653     449999999999999999999999999999998 54  799999999876321     01112


Q ss_pred             CCCcccH--------HHHH---------------HH-HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCC
Q 023675          150 SFKAEDR--------VENI---------------RR-IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       150 ~~~~~~~--------~~~~---------------~~-v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      +|.+++.        .+.+               .. ...+..++...++.     ..+..+|+++++| .++++++.+|
T Consensus        81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p  160 (500)
T TIGR02633        81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA  160 (500)
T ss_pred             EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence            2211110        0000               00 01122223333332     1245688999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHH
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++  ++||||+..++....+.+++.
T Consensus       161 ~l--llLDEPt~~LD~~~~~~l~~~  183 (500)
T TIGR02633       161 RL--LILDEPSSSLTEKETEILLDI  183 (500)
T ss_pred             CE--EEEeCCCCCCCHHHHHHHHHH
Confidence            98  999999999999887776554

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=5.6e-14  Score=136.35  Aligned_cols=142  Identities=18%  Similarity=0.170  Sum_probs=96.2

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-cccccccCC----CC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDL----SF  151 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i~~~~~~~~----~~  151 (279)
                      |++++++++|.+     +.||++.+|++++|+|+||||||||+++|+|.+ .|++|.|.+++.. +. .+....    .+
T Consensus         2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~i~-~~~q~~~~~~~~   79 (530)
T PRK15064          2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL-EPSAGNVSLDPNERLG-KLRQDQFAFEEF   79 (530)
T ss_pred             EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEE-EEeccCCcCCCC
Confidence            566777777754     349999999999999999999999999999999 8999999998732 11 000000    00


Q ss_pred             CcccHHH-----HH------------------------------------HHHHHHHHHHHhCCcch-----hcccCChH
Q 023675          152 KAEDRVE-----NI------------------------------------RRIGEVAKLFADAGVIC-----IACLISPY  185 (279)
Q Consensus       152 ~~~~~~~-----~~------------------------------------~~v~~~~~~~~~~~~~~-----i~~~~~~~  185 (279)
                      +..+...     ..                                    .....+..++...++..     ....+|++
T Consensus        80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG  159 (530)
T PRK15064         80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPG  159 (530)
T ss_pred             cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHH
Confidence            0000000     00                                    00011222333334321     24568899


Q ss_pred             HHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675          186 RKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       186 ~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                      +++| .++++++.+|++  ++||||++.++......+.+.+..
T Consensus       160 q~qrv~lA~aL~~~p~l--LlLDEPt~~LD~~~~~~l~~~l~~  200 (530)
T PRK15064        160 WKLRVLLAQALFSNPDI--LLLDEPTNNLDINTIRWLEDVLNE  200 (530)
T ss_pred             HHHHHHHHHHHhcCCCE--EEEcCCCcccCHHHHHHHHHHHHh
Confidence            9999 999999999998  999999999999988877766653

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.55  E-value=3e-14  Score=137.64  Aligned_cols=142  Identities=16%  Similarity=0.187  Sum_probs=99.9

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCccc
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAED  155 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~  155 (279)
                      .+++++++....++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...     ....++|.+++
T Consensus       268 ~l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~  346 (510)
T PRK15439        268 VLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR-PARGGRIMLNGKEINALSTAQRLARGLVYLPED  346 (510)
T ss_pred             eEEEeCCCCCCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEECCCCCHHHHHhCCcEECCCC
Confidence            4778887754556789999999999999999999999999999999 89999999999876321     01122222221


Q ss_pred             -----------HHHHH--------------HHH-HHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          156 -----------RVENI--------------RRI-GEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       156 -----------~~~~~--------------~~v-~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                                 ..+.+              ... ..+..++...++.     ..+..+|+++++| .++++++.+|++  
T Consensus       347 ~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~l--  424 (510)
T PRK15439        347 RQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQL--  424 (510)
T ss_pred             hhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCE--
Confidence                       00110              000 0112223333332     2345688899998 899999999998  


Q ss_pred             EEEeCCccchhccChhhHHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++||||+..++....+.+.+.+
T Consensus       425 LlLDEPt~gLD~~~~~~l~~~l  446 (510)
T PRK15439        425 LIVDEPTRGVDVSARNDIYQLI  446 (510)
T ss_pred             EEECCCCcCcChhHHHHHHHHH
Confidence            9999999999999887765543

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.55  E-value=3.8e-14  Score=136.28  Aligned_cols=142  Identities=18%  Similarity=0.220  Sum_probs=98.7

Q ss_pred             CeEEeecceee---cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCC
Q 023675           81 NILWHKNSVDK---RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFK  152 (279)
Q Consensus        81 ~i~~~~~~~~~---~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~  152 (279)
                      .|+++++++.+   .++.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...     +...++|.
T Consensus       250 ~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~  328 (491)
T PRK10982        250 ILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR-EKSAGTITLHGKKINNHNANEAINHGFALV  328 (491)
T ss_pred             EEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC-cCCccEEEECCEECCCCCHHHHHHCCCEEc
Confidence            47888887764   34569999999999999999999999999999999 89999999999876421     01112222


Q ss_pred             cccHH----------------HHHH------------HH-HHHHHHHHhCCc-----chhcccCChHHHHH-HHHHHhCC
Q 023675          153 AEDRV----------------ENIR------------RI-GEVAKLFADAGV-----ICIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       153 ~~~~~----------------~~~~------------~v-~~~~~~~~~~~~-----~~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      ++.+.                ..+.            .. ......+...++     ...+..+|+++++| .++++++.
T Consensus       329 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~  408 (491)
T PRK10982        329 TEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLT  408 (491)
T ss_pred             CCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhc
Confidence            21100                0000            00 001111122222     22345688999999 89999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHH
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +|++  ++||||+..++......+++.+
T Consensus       409 ~p~i--llLDEPt~gLD~~~~~~~~~~l  434 (491)
T PRK10982        409 QPEI--LMLDEPTRGIDVGAKFEIYQLI  434 (491)
T ss_pred             CCCE--EEEcCCCcccChhHHHHHHHHH
Confidence            9998  9999999999999887765543

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.55  E-value=2.8e-14  Score=123.93  Aligned_cols=130  Identities=21%  Similarity=0.189  Sum_probs=88.3

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC----CccEEEEcCeecccc--cccCCCCCcccH----------
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHG--LNRDLSFKAEDR----------  156 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~----~~G~i~ldgd~i~~~--~~~~~~~~~~~~----------  156 (279)
                      ++.||++++|++++|+|+||||||||+++|+|.+ .|    .+|.|+++|.++...  ....++|.+++.          
T Consensus         3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~   81 (230)
T TIGR02770         3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL-PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM   81 (230)
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence            3568899999999999999999999999999999 67    899999999876321  011112111110          


Q ss_pred             HHH----HHH--------HHHHHHHHHhCCcc-------hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675          157 VEN----IRR--------IGEVAKLFADAGVI-------CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (279)
Q Consensus       157 ~~~----~~~--------v~~~~~~~~~~~~~-------~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R  216 (279)
                      .+.    ...        ...+...+...++.       ..+..+|+++++| .++++++.+|++  ++||||+..++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~v--llLDEPt~~LD~~  159 (230)
T TIGR02770        82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPF--LIADEPTTDLDVV  159 (230)
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEcCCccccCHH
Confidence            000    000        00112223333332       1234578888888 999999999988  9999999999988


Q ss_pred             ChhhHHHHH
Q 023675          217 DPKGLYKLA  225 (279)
Q Consensus       217 ~~~~l~~~~  225 (279)
                      ..+.+++.+
T Consensus       160 ~~~~l~~~l  168 (230)
T TIGR02770       160 NQARVLKLL  168 (230)
T ss_pred             HHHHHHHHH
Confidence            776655433

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=3.3e-14  Score=137.24  Aligned_cols=141  Identities=18%  Similarity=0.233  Sum_probs=98.1

Q ss_pred             CeEEeecceeec--------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEcCeecccc-----cc
Q 023675           81 NILWHKNSVDKR--------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHG-----LN  146 (279)
Q Consensus        81 ~i~~~~~~~~~~--------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ldgd~i~~~-----~~  146 (279)
                      .++++++++.|.        ++.||++++|++++|+|+||||||||+++|+|++ . |.+|.|+++|.++...     ..
T Consensus       259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~~~G~i~~~g~~~~~~~~~~~~~  337 (506)
T PRK13549        259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PGRWEGEIFIDGKPVKIRNPQQAIA  337 (506)
T ss_pred             eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCcEEEECCEECCCCCHHHHHH
Confidence            478899988883        2349999999999999999999999999999999 6 5899999999876311     01


Q ss_pred             cCCCCCccc-----------HHHHHH-----------------HHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHH
Q 023675          147 RDLSFKAED-----------RVENIR-----------------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DAC  192 (279)
Q Consensus       147 ~~~~~~~~~-----------~~~~~~-----------------~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~a  192 (279)
                      ..++|.++.           ..+.+.                 ....+...+...++.     ..+..+|+++++| .++
T Consensus       338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA  417 (506)
T PRK13549        338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA  417 (506)
T ss_pred             CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence            112221111           000000                 001122223333332     2345688999999 899


Q ss_pred             HHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       193 r~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++++.+|++  ++||||+..++....+.+++.
T Consensus       418 ~al~~~p~l--llLDEPt~~LD~~~~~~l~~~  447 (506)
T PRK13549        418 KCLLLNPKI--LILDEPTRGIDVGAKYEIYKL  447 (506)
T ss_pred             HHHhhCCCE--EEEcCCCCCcCHhHHHHHHHH
Confidence            999999998  999999999999887775543

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.54  E-value=3.1e-14  Score=124.25  Aligned_cols=132  Identities=15%  Similarity=0.116  Sum_probs=89.8

Q ss_pred             cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCc---------ccHHHH
Q 023675           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKA---------EDRVEN  159 (279)
Q Consensus        92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~---------~~~~~~  159 (279)
                      ..+.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...   ....++|.+         ....+.
T Consensus        37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~  115 (236)
T cd03267          37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL-QPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDS  115 (236)
T ss_pred             eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHH
Confidence            34568999999999999999999999999999999 89999999999865210   111111111         001111


Q ss_pred             HHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675          160 IRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (279)
Q Consensus       160 ~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~  222 (279)
                      +..            ...+..++...++..    .+..+|+++++| .++++++.+|++  +++|||+..++....+.++
T Consensus       116 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD~~~~~~l~  193 (236)
T cd03267         116 FYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEI--LFLDEPTIGLDVVAQENIR  193 (236)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHHHHH
Confidence            100            001112222223321    234578888888 899999999998  9999999999998877766


Q ss_pred             HHHh
Q 023675          223 KLAR  226 (279)
Q Consensus       223 ~~~~  226 (279)
                      +.+.
T Consensus       194 ~~l~  197 (236)
T cd03267         194 NFLK  197 (236)
T ss_pred             HHHH
Confidence            5443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.54  E-value=3.2e-14  Score=123.13  Aligned_cols=125  Identities=19%  Similarity=0.253  Sum_probs=85.3

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc----------cHHHHH------
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE----------DRVENI------  160 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~----------~~~~~~------  160 (279)
                      |++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++.... ..++|.++          ...+.+      
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~-~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~   78 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLI-PPAKGTVKVAGASPGKGW-RHIGYVPQRHEFAWDFPISVAHTVMSGRTG   78 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCccchHhh-CcEEEecccccccCCCCccHHHHHHhcccc
Confidence            568899999999999999999999999999 899999999998752110 00111000          000000      


Q ss_pred             ----------HHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          161 ----------RRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       161 ----------~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                                .....+..++...++.    ..+..+|+++++| .++++++.+|++  +++|||+..++....+.+++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lilDEP~~~LD~~~~~~l~~~l  156 (223)
T TIGR03771        79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSV--LLLDEPFTGLDMPTQELLTELF  156 (223)
T ss_pred             ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence                      0001122222222332    1344588888888 999999999998  9999999999998877765543

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.54  E-value=3.3e-14  Score=136.96  Aligned_cols=140  Identities=16%  Similarity=0.195  Sum_probs=97.0

Q ss_pred             CeEEeecceeec--------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEcCeecccc-----cc
Q 023675           81 NILWHKNSVDKR--------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHG-----LN  146 (279)
Q Consensus        81 ~i~~~~~~~~~~--------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ldgd~i~~~-----~~  146 (279)
                      .++++++++.|.        ++.||++.+|++++|+|+||||||||+++|+|.+ . +.+|.|+++|.++...     +.
T Consensus       257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~~G~i~~~g~~~~~~~~~~~~~  335 (500)
T TIGR02633       257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY-PGKFEGNVFINGKPVDIRNPAQAIR  335 (500)
T ss_pred             eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCeEEEECCEECCCCCHHHHHh
Confidence            478888888772        2349999999999999999999999999999999 6 4799999999776311     01


Q ss_pred             cCCCCCcccH-----------HHH--------H--------H-HHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHH
Q 023675          147 RDLSFKAEDR-----------VEN--------I--------R-RIGEVAKLFADAGVI-----CIACLISPYRKDR-DAC  192 (279)
Q Consensus       147 ~~~~~~~~~~-----------~~~--------~--------~-~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~a  192 (279)
                      ..++|.+++.           .+.        .        . .-..+..++...++.     ..+..+|+++++| .++
T Consensus       336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la  415 (500)
T TIGR02633       336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA  415 (500)
T ss_pred             CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence            1122211110           000        0        0 001122233333332     2345689999999 899


Q ss_pred             HHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       193 r~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      ++++.+|++  ++||||+..++......+++
T Consensus       416 ~al~~~p~l--llLDEPt~~LD~~~~~~l~~  444 (500)
T TIGR02633       416 KMLLTNPRV--LILDEPTRGVDVGAKYEIYK  444 (500)
T ss_pred             HHHhhCCCE--EEEcCCCCCcCHhHHHHHHH
Confidence            999999998  99999999999988776554

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.54  E-value=3.8e-14  Score=139.95  Aligned_cols=140  Identities=17%  Similarity=0.133  Sum_probs=97.7

Q ss_pred             CeEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc--------
Q 023675           81 NILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------  143 (279)
Q Consensus        81 ~i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~--------  143 (279)
                      .+++++++++|..         +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|..+..        
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll-~p~~G~i~~~g~~~~~~~~~~~~~   90 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL-EQAGGLVQCDKMLLRRRSRQVIEL   90 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCeEEEECCEEecccccccccc
Confidence            5788888888852         339999999999999999999999999999999 8899999998853310        


Q ss_pred             ---------cc-ccCCCCCccc----------HHHHHHH-------------HHHHHHHHHhCCcc-------hhcccCC
Q 023675          144 ---------GL-NRDLSFKAED----------RVENIRR-------------IGEVAKLFADAGVI-------CIACLIS  183 (279)
Q Consensus       144 ---------~~-~~~~~~~~~~----------~~~~~~~-------------v~~~~~~~~~~~~~-------~i~~~~~  183 (279)
                               .. ...+++.+++          ..+.+..             ...+..++...++.       .....+|
T Consensus        91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LS  170 (623)
T PRK10261         91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLS  170 (623)
T ss_pred             ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCC
Confidence                     00 0112222221          0111110             01122233344441       2345689


Q ss_pred             hHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          184 PYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       184 ~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      +++++| .++++++.+|++  +++|||+..++......+.+
T Consensus       171 gGq~QRv~iA~AL~~~P~l--LllDEPt~~LD~~~~~~l~~  209 (623)
T PRK10261        171 GGMRQRVMIAMALSCRPAV--LIADEPTTALDVTIQAQILQ  209 (623)
T ss_pred             HHHHHHHHHHHHHhCCCCE--EEEeCCCCccCHHHHHHHHH
Confidence            999999 999999999998  99999999999988766444

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.54  E-value=7.2e-14  Score=122.78  Aligned_cols=125  Identities=14%  Similarity=0.039  Sum_probs=83.6

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc-ccHHHHHHHH--------HHH
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA-EDRVENIRRI--------GEV  166 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~-~~~~~~~~~v--------~~~  166 (279)
                      ++.+.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|..+... ........ ....+.+...        ...
T Consensus        19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~-~p~~G~i~~~g~~i~~~-~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~   96 (246)
T cd03237          19 GGSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELDTVSYK-PQYIKADYEGTVRDLLSSITKDFYTHPYFK   96 (246)
T ss_pred             cCCcCCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCceEEEe-cccccCCCCCCHHHHHHHHhhhccccHHHH
Confidence            4466789999999999999999999999999 89999999999644210 00000000 0011111100        001


Q ss_pred             HHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          167 AKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       167 ~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ..++...++..    .+..+|+++++| .++++++.+|++  +++|||+..++......+.+.
T Consensus        97 ~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~l--lllDEPt~~LD~~~~~~l~~~  157 (246)
T cd03237          97 TEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADI--YLLDEPSAYLDVEQRLMASKV  157 (246)
T ss_pred             HHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence            11222233322    244588899988 899999999998  999999999999887765543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=8.6e-14  Score=137.68  Aligned_cols=143  Identities=17%  Similarity=0.203  Sum_probs=95.9

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec----ccccc----cC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC----RHGLN----RD  148 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i----~~~~~----~~  148 (279)
                      |+++|++++|..     +.||++.+|++++|+|+||||||||+++|+|.+ .|++|.|.+++...    .....    ..
T Consensus         2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~-~pd~G~I~~~~~~~i~~~~q~~~~~~~~~   80 (638)
T PRK10636          2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI-SADGGSYTFPGNWQLAWVNQETPALPQPA   80 (638)
T ss_pred             EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence            566777777764     449999999999999999999999999999998 89999999988531    10000    00


Q ss_pred             CCCCcccHHH------------------HHHH-------------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HH
Q 023675          149 LSFKAEDRVE------------------NIRR-------------IGEVAKLFADAGVI-----CIACLISPYRKDR-DA  191 (279)
Q Consensus       149 ~~~~~~~~~~------------------~~~~-------------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~  191 (279)
                      +++..+....                  .+..             -..+..++...|+.     ..+..+|+|+++| .+
T Consensus        81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L  160 (638)
T PRK10636         81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL  160 (638)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence            0111100000                  0000             00112223333332     1244578999998 99


Q ss_pred             HHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       192 ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                      +++++.+|++  ++||||++.|+......+.+.+..
T Consensus       161 A~aL~~~P~l--LLLDEPtn~LD~~~~~~L~~~L~~  194 (638)
T PRK10636        161 AQALICRSDL--LLLDEPTNHLDLDAVIWLEKWLKS  194 (638)
T ss_pred             HHHHccCCCE--EEEcCCCCcCCHHHHHHHHHHHHh
Confidence            9999999998  999999999999877766665543

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.53  E-value=9.3e-14  Score=135.52  Aligned_cols=143  Identities=18%  Similarity=0.143  Sum_probs=95.8

Q ss_pred             CeEEeecceeec-C-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe-ecccccccCCCCCc
Q 023675           81 NILWHKNSVDKR-D-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRDLSFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~-~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd-~i~~~~~~~~~~~~  153 (279)
                      .+++++++++|. +     +.||++++|++++|+|+||||||||+++|+|.+ .|++|.|.+++. .+.. +.....+.+
T Consensus         6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~-~p~~G~i~~~~~~~i~~-v~Q~~~~~~   83 (556)
T PRK11819          6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFEGEARPAPGIKVGY-LPQEPQLDP   83 (556)
T ss_pred             EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEE-EecCCCCCC
Confidence            467788888886 3     349999999999999999999999999999999 899999998753 1110 000000000


Q ss_pred             c-cHHHHHHH------------------------------------------------HHHHHHHHHhCCc---chhccc
Q 023675          154 E-DRVENIRR------------------------------------------------IGEVAKLFADAGV---ICIACL  181 (279)
Q Consensus       154 ~-~~~~~~~~------------------------------------------------v~~~~~~~~~~~~---~~i~~~  181 (279)
                      . ...+.+..                                                ...+...+...++   ...+..
T Consensus        84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~  163 (556)
T PRK11819         84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTK  163 (556)
T ss_pred             CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhh
Confidence            0 00010000                                                0001111222222   112345


Q ss_pred             CChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675          182 ISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       182 ~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                      +|+++++| .++++++.+|++  ++||||++.|+......+.+.++.
T Consensus       164 LSgGqkqrv~la~al~~~p~v--lLLDEPt~~LD~~~~~~l~~~L~~  208 (556)
T PRK11819        164 LSGGERRRVALCRLLLEKPDM--LLLDEPTNHLDAESVAWLEQFLHD  208 (556)
T ss_pred             cCHHHHHHHHHHHHHhCCCCE--EEEcCCCCcCChHHHHHHHHHHHh
Confidence            88899998 999999999998  999999999999988877665553

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.53  E-value=2.6e-15  Score=123.30  Aligned_cols=157  Identities=22%  Similarity=0.312  Sum_probs=101.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc---ccccCCCCCcccHHHHHHHHHHHHHHH-Hh-CCcch
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRVENIRRIGEVAKLF-AD-AGVIC  177 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~  177 (279)
                      ..++|||++||||||+++.|++.|+-+     ++|.|.+-.   +++....|.......++..-.++...+ .. ..+++
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~-----F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~Via   77 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLP-----FIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIA   77 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCC-----cccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEE
Confidence            468999999999999999999999766     899987632   222212222223333333322332222 22 24455


Q ss_pred             hcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChh----hHHHH-HhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675          178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK----GLYKL-AREGKVKGFTGIDDPYEPPLNCEIVLKQ  252 (279)
Q Consensus       178 i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~----~l~~~-~~~~~~~~~~~~r~~~~~~~~a~~~i~~  252 (279)
                      .+++....+++|..++.    .. +.|||+.|++.+.+|+..    ++++. .+...+..++..|.++|... ++.++++
T Consensus        78 TGGG~v~~~enr~~l~~----~g-~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~-a~~~~~~  151 (172)
T COG0703          78 TGGGAVLSEENRNLLKK----RG-IVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREV-ADFIIDT  151 (172)
T ss_pred             CCCccccCHHHHHHHHh----CC-eEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHh-CcEEecC
Confidence            55555555555554433    22 459999999999999872    23332 22244667788899999875 7788887


Q ss_pred             cCCCCCCHHHHHHHHHHHHHhC
Q 023675          253 MGDDCPSPADMVETVVSYLDEN  274 (279)
Q Consensus       253 ~~~~~~~~~e~~~~Il~~l~~~  274 (279)
                         +..+ ++++++|+..|...
T Consensus       152 ---~~~~-~~v~~~i~~~l~~~  169 (172)
T COG0703         152 ---DDRS-EEVVEEILEALEGS  169 (172)
T ss_pred             ---CCCc-HHHHHHHHHHHHHh
Confidence               5666 88999999988753

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=1e-13  Score=134.53  Aligned_cols=144  Identities=17%  Similarity=0.088  Sum_probs=99.7

Q ss_pred             CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCC--CCCc
Q 023675           81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL--SFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~--~~~~  153 (279)
                      .+++++++++|.++     .||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.+++..-.-.+....  .+..
T Consensus       319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~~~q~~~~~~~~  397 (530)
T PRK15064        319 ALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-EPDSGTVKWSENANIGYYAQDHAYDFEN  397 (530)
T ss_pred             eEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCceEEEEEcccccccCCC
Confidence            58999999998643     49999999999999999999999999999999 8999999998842100011100  0110


Q ss_pred             -ccHHHHHHH-------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675          154 -EDRVENIRR-------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (279)
Q Consensus       154 -~~~~~~~~~-------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~  219 (279)
                       ....+.+..       -..+...+...++.     ..+..+|+++++| .++++++.+|++  ++||||++.++.....
T Consensus       398 ~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l--llLDEPt~~LD~~~~~  475 (530)
T PRK15064        398 DLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV--LVMDEPTNHMDMESIE  475 (530)
T ss_pred             CCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHH
Confidence             001111110       01112223333331     2355688999998 899999999998  9999999999998877


Q ss_pred             hHHHHHhC
Q 023675          220 GLYKLARE  227 (279)
Q Consensus       220 ~l~~~~~~  227 (279)
                      .+.+.+..
T Consensus       476 ~l~~~l~~  483 (530)
T PRK15064        476 SLNMALEK  483 (530)
T ss_pred             HHHHHHHH
Confidence            77765553

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.53  E-value=1.7e-13  Score=122.66  Aligned_cols=143  Identities=15%  Similarity=0.180  Sum_probs=91.3

Q ss_pred             CCCCeEEeecceee---cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec--ccc--cc----
Q 023675           78 KSTNILWHKNSVDK---RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RHG--LN----  146 (279)
Q Consensus        78 ~~~~i~~~~~~~~~---~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i--~~~--~~----  146 (279)
                      ....++++++++..   ....||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.--  .+.  +.    
T Consensus        36 ~~~~l~i~nls~~~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~-~p~~G~I~i~g~i~yv~q~~~l~~~tv  114 (282)
T cd03291          36 DDNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPSEGKIKHSGRISFSSQFSWIMPGTI  114 (282)
T ss_pred             CCCeEEEEEEEEecccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEEEEeCcccccccCH
Confidence            34568888887641   23449999999999999999999999999999999 89999999988421  000  00    


Q ss_pred             -cCCCCCcccHHHHHHHHHH---HHHHHHhCC--c----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675          147 -RDLSFKAEDRVENIRRIGE---VAKLFADAG--V----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (279)
Q Consensus       147 -~~~~~~~~~~~~~~~~v~~---~~~~~~~~~--~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~  215 (279)
                       ..+.+........+.....   +...+....  .    ...+..+|+++++| .++++++.+|++  +++|||+..++.
T Consensus       115 ~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i--LiLDEPt~gLD~  192 (282)
T cd03291         115 KENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGYLDV  192 (282)
T ss_pred             HHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECCCccCCH
Confidence             0000100000000000000   001111000  0    01124678888888 899999999988  999999999998


Q ss_pred             cChhhHHH
Q 023675          216 RDPKGLYK  223 (279)
Q Consensus       216 R~~~~l~~  223 (279)
                      .....+++
T Consensus       193 ~~~~~l~~  200 (282)
T cd03291         193 FTEKEIFE  200 (282)
T ss_pred             HHHHHHHH
Confidence            77665544

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.53  E-value=4.1e-14  Score=136.98  Aligned_cols=139  Identities=19%  Similarity=0.183  Sum_probs=92.4

Q ss_pred             EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEc-------------------
Q 023675           83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILD-------------------  137 (279)
Q Consensus        83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ld-------------------  137 (279)
                      +++|++++|..     +.||++.+|++++|+|+||||||||+++|+|++. .|.+|.|+++                   
T Consensus         2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~   81 (520)
T TIGR03269         2 EVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEP   81 (520)
T ss_pred             EEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccc
Confidence            45666666643     4499999999999999999999999999999863 5889999997                   


Q ss_pred             ----Ceecc-------c-------ccccCCCCCccc---------HHHHHHH------------HHHHHHHHHhCCcch-
Q 023675          138 ----GDNCR-------H-------GLNRDLSFKAED---------RVENIRR------------IGEVAKLFADAGVIC-  177 (279)
Q Consensus       138 ----gd~i~-------~-------~~~~~~~~~~~~---------~~~~~~~------------v~~~~~~~~~~~~~~-  177 (279)
                          |.++.       .       .....+++.++.         ..+.+..            ...+..++...++.. 
T Consensus        82 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~  161 (520)
T TIGR03269        82 CPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHR  161 (520)
T ss_pred             cccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh
Confidence                22210       0       001111211110         0111100            011222333333322 


Q ss_pred             ---hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          178 ---IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       178 ---i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                         ....+|+++++| .++++++.+|++  ++||||++.++......+++
T Consensus       162 ~~~~~~~LSgGq~qrv~iA~al~~~p~l--llLDEPt~~LD~~~~~~l~~  209 (520)
T TIGR03269       162 ITHIARDLSGGEKQRVVLARQLAKEPFL--FLADEPTGTLDPQTAKLVHN  209 (520)
T ss_pred             hhcCcccCCHHHHHHHHHHHHHhcCCCE--EEeeCCcccCCHHHHHHHHH
Confidence               345689999999 999999999998  99999999999998877544

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.53  E-value=7.1e-14  Score=124.46  Aligned_cols=133  Identities=20%  Similarity=0.210  Sum_probs=91.6

Q ss_pred             eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC----CccEEEEcCeecccc--------cccCCCCCcccH
Q 023675           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHG--------LNRDLSFKAEDR  156 (279)
Q Consensus        89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~----~~G~i~ldgd~i~~~--------~~~~~~~~~~~~  156 (279)
                      +...++.||++.+||+++|||.|||||||++++|+++++.+    .+|+|.++|.++...        ....+++.+++.
T Consensus        18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p   97 (316)
T COG0444          18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP   97 (316)
T ss_pred             EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence            44455669999999999999999999999999999999523    468999999976311        112233333321


Q ss_pred             --------------HHHHH----------HHHHHHHHHHhCCcc-------hhcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          157 --------------VENIR----------RIGEVAKLFADAGVI-------CIACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       157 --------------~~~~~----------~v~~~~~~~~~~~~~-------~i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                                    .+.+.          .......++...++-       .+...+|++++|| -+|.+++.+|++  +
T Consensus        98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~L--l  175 (316)
T COG0444          98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKL--L  175 (316)
T ss_pred             hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCE--E
Confidence                          01111          011222333333332       1344588999999 889999999999  9


Q ss_pred             EEeCCccchhccChhhHHH
Q 023675          205 FMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~  223 (279)
                      +.|||+..|+--.+..+++
T Consensus       176 IADEPTTALDvt~QaqIl~  194 (316)
T COG0444         176 IADEPTTALDVTVQAQILD  194 (316)
T ss_pred             EeCCCcchhhHHHHHHHHH
Confidence            9999999998887766443

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.52  E-value=9.2e-14  Score=113.56  Aligned_cols=143  Identities=21%  Similarity=0.151  Sum_probs=95.8

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc--c----------
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--H----------  143 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~--~----------  143 (279)
                      -+++++++-.|..     +.||.+.|||+++|+|.||||||||+++|++.+ .|+.|.|..+.++-.  +          
T Consensus         6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl-~p~~G~v~Y~~r~~~~~dl~~msEaeRR   84 (258)
T COG4107           6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL-TPDAGTVTYRMRDGQPRDLYTMSEAERR   84 (258)
T ss_pred             ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc-CCCCCeEEEEcCCCCchhHhhhchHHHH
Confidence            3455666666654     449999999999999999999999999999999 899999987763321  0          


Q ss_pred             -ccccCCCCCcccH----------------------HHHHHHHHHHHHHHHh-----C-CcchhcccCChHHHHH-HHHH
Q 023675          144 -GLNRDLSFKAEDR----------------------VENIRRIGEVAKLFAD-----A-GVICIACLISPYRKDR-DACR  193 (279)
Q Consensus       144 -~~~~~~~~~~~~~----------------------~~~~~~v~~~~~~~~~-----~-~~~~i~~~~~~~~~~r-~~ar  193 (279)
                       -++.+.+|..+..                      .+.+..+.+.+.-...     . .+-......+++.++| .++|
T Consensus        85 ~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiAR  164 (258)
T COG4107          85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR  164 (258)
T ss_pred             HHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHH
Confidence             0122233322211                      1223333333332221     1 1112344466777777 9999


Q ss_pred             HhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      .++..|.+  +|+|||+..++-..+.+++...+
T Consensus       165 nLVt~PrL--vfMDEPTGGLDVSVQARLLDllr  195 (258)
T COG4107         165 NLVTRPRL--VFMDEPTGGLDVSVQARLLDLLR  195 (258)
T ss_pred             HhccCCce--EEecCCCCCcchhhHHHHHHHHH
Confidence            99999988  99999999999888877665444

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.52  E-value=1.1e-13  Score=125.69  Aligned_cols=140  Identities=19%  Similarity=0.194  Sum_probs=92.4

Q ss_pred             CCCCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc------
Q 023675           78 KSTNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------  145 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~------  145 (279)
                      .-..++++|+.|.|++..      |+++++|+++.|+|.|||||||++++|.|++ .|++|.|++||.++...-      
T Consensus       319 ~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~-~PqsG~I~ldg~pV~~e~ledYR~  397 (546)
T COG4615         319 DWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVSAEQLEDYRK  397 (546)
T ss_pred             cccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc-CCCCCceeECCccCCCCCHHHHHH
Confidence            345799999999998763      8999999999999999999999999999999 999999999999885210      


Q ss_pred             -----c----------cCCC-CCcccHHHHHHHHHHHHHHHH-hCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675          146 -----N----------RDLS-FKAEDRVENIRRIGEVAKLFA-DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (279)
Q Consensus       146 -----~----------~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld  207 (279)
                           .          +..+ -+++....|..++. ++.... ..+..... .++.+|+.| +...+++.+.++  +.+|
T Consensus       398 LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLe-l~~ktsl~d~~fs~~-kLStGQkKRlAll~AllEeR~I--lv~D  473 (546)
T COG4615         398 LFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLE-LAHKTSLNDGRFSNL-KLSTGQKKRLALLLALLEERDI--LVLD  473 (546)
T ss_pred             HHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHH-HhhhhcccCCccccc-ccccchHHHHHHHHHHHhhCCe--EEee
Confidence                 0          0001 11112222222221 111111 11222222 355666666 888888888777  7888


Q ss_pred             CCccchhccChhhHH
Q 023675          208 VPLQVCEARDPKGLY  222 (279)
Q Consensus       208 ~p~~~l~~R~~~~l~  222 (279)
                      |=-+.-++..++-.|
T Consensus       474 EWAADQDPaFRR~FY  488 (546)
T COG4615         474 EWAADQDPAFRREFY  488 (546)
T ss_pred             hhhccCChHHHHHHH
Confidence            865555554444444

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.52  E-value=3.6e-14  Score=116.79  Aligned_cols=129  Identities=19%  Similarity=0.243  Sum_probs=89.3

Q ss_pred             ceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-----------c--cC------
Q 023675           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----------N--RD------  148 (279)
Q Consensus        88 ~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-----------~--~~------  148 (279)
                      .|.+...+||++.+|++++++|.||||||||+++|+|.. .|++|+|++++..+..+-           .  ..      
T Consensus        25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi-~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPR  103 (267)
T COG4167          25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPR  103 (267)
T ss_pred             hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc-CCCCceEEECCccccccchHhhhhheeeeecCCccccChh
Confidence            445556779999999999999999999999999999999 899999999998773210           0  00      


Q ss_pred             --------------CCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccch
Q 023675          149 --------------LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (279)
Q Consensus       149 --------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l  213 (279)
                                    -.+.++.+.+.+..-.+...++.+.. ......++.++++| +++|+++-+|++  |+.|+.+..+
T Consensus       104 l~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdha-n~~~~~la~~QKQRVaLARALIL~P~i--IIaDeAl~~L  180 (267)
T COG4167         104 LRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHA-NYYPHMLAPGQKQRVALARALILRPKI--IIADEALASL  180 (267)
T ss_pred             hhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccc-ccchhhcCchhHHHHHHHHHHhcCCcE--EEehhhhhhc
Confidence                          01222222222111111122222221 12445577788898 999999999988  8999999988


Q ss_pred             hccChhh
Q 023675          214 EARDPKG  220 (279)
Q Consensus       214 ~~R~~~~  220 (279)
                      +.-....
T Consensus       181 D~smrsQ  187 (267)
T COG4167         181 DMSMRSQ  187 (267)
T ss_pred             cHHHHHH
Confidence            8766554

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.52  E-value=1.6e-13  Score=130.77  Aligned_cols=140  Identities=21%  Similarity=0.175  Sum_probs=94.1

Q ss_pred             CeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCC
Q 023675           81 NILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK  152 (279)
Q Consensus        81 ~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~  152 (279)
                      .+.++++.+.|..+        .+|++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++|.+......  ..+.
T Consensus        21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl-~P~sGeI~I~G~~~~i~~~--~~l~   97 (549)
T PRK13545         21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT-MPNKGTVDIKGSAALIAIS--SGLN   97 (549)
T ss_pred             eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCceEEEECCEeeeEEec--cccC
Confidence            35666666666542        38999999999999999999999999999999 8999999999975311000  0110


Q ss_pred             cc-cHHHHHH-----------HH-HHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675          153 AE-DRVENIR-----------RI-GEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (279)
Q Consensus       153 ~~-~~~~~~~-----------~v-~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~  214 (279)
                      +. ...+.+.           .. ..+..++...++.    ..+..+|+++++| .++++++.+|++  ++||||+..++
T Consensus        98 ~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L--LLLDEPTsgLD  175 (549)
T PRK13545         98 GQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI--LVIDEALSVGD  175 (549)
T ss_pred             CCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE--EEEECCcccCC
Confidence            00 0000000           00 0011122222321    2345688899998 899999999998  99999999999


Q ss_pred             ccChhhHHHHH
Q 023675          215 ARDPKGLYKLA  225 (279)
Q Consensus       215 ~R~~~~l~~~~  225 (279)
                      ....+.+++.+
T Consensus       176 ~~sr~~LlelL  186 (549)
T PRK13545        176 QTFTKKCLDKM  186 (549)
T ss_pred             HHHHHHHHHHH
Confidence            88776655543

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.52  E-value=8.2e-14  Score=133.93  Aligned_cols=143  Identities=16%  Similarity=0.151  Sum_probs=98.3

Q ss_pred             CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-CccEEEEcCeecccc-----cccC
Q 023675           80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNCRHG-----LNRD  148 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-~~G~i~ldgd~i~~~-----~~~~  148 (279)
                      ..++++++++.|..     +.||.+.+|++++|+|+||||||||+++|+|.+ .+ .+|.|+++|.++...     ....
T Consensus       259 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~~~~~~~~~  337 (490)
T PRK10938        259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGETIWDIKKH  337 (490)
T ss_pred             ceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCCCHHHHHhh
Confidence            35889999888864     349999999999999999999999999999976 54 699999999754211     1111


Q ss_pred             CCCCcccH----------HHHH---------------H-HHHHHHHHHHhCCcch-----hcccCChHHHHH-HHHHHhC
Q 023675          149 LSFKAEDR----------VENI---------------R-RIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSML  196 (279)
Q Consensus       149 ~~~~~~~~----------~~~~---------------~-~v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l~  196 (279)
                      ++|.+++.          ....               . ....+..++...++..     .+..+|+++++| .++++++
T Consensus       338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~  417 (490)
T PRK10938        338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV  417 (490)
T ss_pred             ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence            22222111          0000               0 0001122222333322     234688899998 8999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .+|++  ++||||++.++....+.+.+.+
T Consensus       418 ~~p~l--llLDEPt~gLD~~~~~~l~~~L  444 (490)
T PRK10938        418 KHPTL--LILDEPLQGLDPLNRQLVRRFV  444 (490)
T ss_pred             cCCCE--EEEcCccccCCHHHHHHHHHHH
Confidence            99998  9999999999998877765543

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.52  E-value=1.4e-13  Score=133.34  Aligned_cols=142  Identities=17%  Similarity=0.155  Sum_probs=98.0

Q ss_pred             CeEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc-Cee---ccc---
Q 023675           81 NILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDN---CRH---  143 (279)
Q Consensus        81 ~i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld-gd~---i~~---  143 (279)
                      .+++++++++|..          +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++ |.+   +..   
T Consensus       279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~g~~~~~~~~~~~  357 (520)
T TIGR03269       279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL-EPTSGEVNVRVGDEWVDMTKPGP  357 (520)
T ss_pred             eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEEecCCccccccccch
Confidence            5889999988841          238999999999999999999999999999999 8999999996 532   110   


Q ss_pred             ----ccccCCCCCccc--------HHHHHHH----------H-HHHHHHHHhCCcc---------hhcccCChHHHHH-H
Q 023675          144 ----GLNRDLSFKAED--------RVENIRR----------I-GEVAKLFADAGVI---------CIACLISPYRKDR-D  190 (279)
Q Consensus       144 ----~~~~~~~~~~~~--------~~~~~~~----------v-~~~~~~~~~~~~~---------~i~~~~~~~~~~r-~  190 (279)
                          .....++|.+++        ..+.+..          . ..+...+...++.         ..+..+|+++++| .
T Consensus       358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~  437 (520)
T TIGR03269       358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA  437 (520)
T ss_pred             hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence                001111221111        1111110          0 1122233334442         2345688999999 9


Q ss_pred             HHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       191 ~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ++++++.+|++  +++|||+..++....+.+.+.+
T Consensus       438 laral~~~p~l--LllDEPt~~LD~~~~~~l~~~l  470 (520)
T TIGR03269       438 LAQVLIKEPRI--VILDEPTGTMDPITKVDVTHSI  470 (520)
T ss_pred             HHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence            99999999998  9999999999999887766544

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.51  E-value=2.9e-14  Score=113.82  Aligned_cols=134  Identities=20%  Similarity=0.218  Sum_probs=88.9

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC---ccEEEEcCeecccc---------cc------------cCC
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHG---------LN------------RDL  149 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~---~G~i~ldgd~i~~~---------~~------------~~~  149 (279)
                      +.|+++.+|+++-|+||||||||||+.-+.|.| .+.   .|++++++.++..-         +.            .++
T Consensus        20 ~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~L-a~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl   98 (213)
T COG4136          20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGAL-AGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNL   98 (213)
T ss_pred             eeeEEecCCcEEEEECCCCccHHHHHHHHHhhc-ccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccce
Confidence            448999999999999999999999999999999 544   79999999887310         00            000


Q ss_pred             CC--CcccHHHHHHHHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhh--
Q 023675          150 SF--KAEDRVENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG--  220 (279)
Q Consensus       150 ~~--~~~~~~~~~~~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~--  220 (279)
                      -|  ...-..+.++.....+  +...++..    -.+.++++++-| ...|.++..|++  ++||||++.++..+++.  
T Consensus        99 ~fAlp~~~KG~aRr~~a~aA--L~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~--lLLDEPFS~LD~ALR~qfR  174 (213)
T COG4136          99 LFALPATLKGNARRNAANAA--LERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKA--LLLDEPFSRLDVALRDQFR  174 (213)
T ss_pred             EEecCcccccHHHHhhHHHH--HHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcce--eeeCCchhHHHHHHHHHHH
Confidence            01  0000011122222111  22222221    244578888888 889999999999  99999999998877654  


Q ss_pred             --HHHHHhCCCCCC
Q 023675          221 --LYKLAREGKVKG  232 (279)
Q Consensus       221 --l~~~~~~~~~~~  232 (279)
                        ++...+...+..
T Consensus       175 ~wVFs~~r~agiPt  188 (213)
T COG4136         175 QWVFSEVRAAGIPT  188 (213)
T ss_pred             HHHHHHHHhcCCCe
Confidence              556666555543

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.51  E-value=1.4e-14  Score=127.32  Aligned_cols=130  Identities=16%  Similarity=0.213  Sum_probs=86.2

Q ss_pred             cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCCccc--------HHHH
Q 023675           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFKAED--------RVEN  159 (279)
Q Consensus        92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~~~~--------~~~~  159 (279)
                      .++.||++.+|++++|+|+||||||||+++|+|.+ .+ +|.|+++|.++...    ....++|.++.        ..+.
T Consensus        12 l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n   89 (248)
T PRK03695         12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY   89 (248)
T ss_pred             ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence            35679999999999999999999999999999988 44 89999999876321    00111111110        0111


Q ss_pred             HHH-----------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCC-------CCCccEEEEeCCccchhcc
Q 023675          160 IRR-----------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLP-------EGDFIEVFMDVPLQVCEAR  216 (279)
Q Consensus       160 ~~~-----------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~-------~~~~i~i~ld~p~~~l~~R  216 (279)
                      +..           ...+..++...++.    ..+..+|+++++| .++++++.       +|++  +++|||+..++..
T Consensus        90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l--lllDEPt~~LD~~  167 (248)
T PRK03695         90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL--LLLDEPMNSLDVA  167 (248)
T ss_pred             HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE--EEEcCCcccCCHH
Confidence            000           00112222222332    2345678889888 88999986       5577  9999999999998


Q ss_pred             ChhhHHHHH
Q 023675          217 DPKGLYKLA  225 (279)
Q Consensus       217 ~~~~l~~~~  225 (279)
                      ..+.+++.+
T Consensus       168 ~~~~l~~~L  176 (248)
T PRK03695        168 QQAALDRLL  176 (248)
T ss_pred             HHHHHHHHH
Confidence            776655443

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.51  E-value=1e-13  Score=123.06  Aligned_cols=127  Identities=20%  Similarity=0.167  Sum_probs=84.2

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc-ccHHHHHH----------
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA-EDRVENIR----------  161 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~-~~~~~~~~----------  161 (279)
                      ...+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.......  ...+.. ....+.+.          
T Consensus        41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~-~p~~G~I~~~g~~~~~~~--~~~~~~~~tv~enl~~~~~~~~~~~  117 (264)
T PRK13546         41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL-SPTVGKVDRNGEVSVIAI--SAGLSGQLTGIENIEFKMLCMGFKR  117 (264)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEeEEec--ccCCCCCCcHHHHHHHHHHHcCCCH
Confidence            4568999999999999999999999999999999 899999999996311000  001100 00000000          


Q ss_pred             -HHH-HHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          162 -RIG-EVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       162 -~v~-~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                       ... ....++...++.    ..+..+|+++++| .++++++.+|++  +++|||+..++....+.+++.
T Consensus       118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~i--LlLDEPt~gLD~~~~~~l~~~  185 (264)
T PRK13546        118 KEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDI--LVIDEALSVGDQTFAQKCLDK  185 (264)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCE--EEEeCccccCCHHHHHHHHHH
Confidence             000 011111111221    1344578888888 899999999998  999999999998766655543

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.51  E-value=1.6e-13  Score=135.84  Aligned_cols=143  Identities=16%  Similarity=0.167  Sum_probs=95.0

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec-c---cc-cccCCCC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC-R---HG-LNRDLSF  151 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i-~---~~-~~~~~~~  151 (279)
                      +++++++++|..     +.||.+++|++++|+|+||||||||+++|+|.+ .|++|.|.++++.. .   .. ......+
T Consensus         4 l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~-~p~~G~I~~~~~~~~~~l~q~~~~~~~~~   82 (635)
T PRK11147          4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV-LLDDGRIIYEQDLIVARLQQDPPRNVEGT   82 (635)
T ss_pred             EEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEeCCCCEEEEeccCCCCCCCCC
Confidence            567777777764     449999999999999999999999999999999 89999999987421 0   00 0000111


Q ss_pred             CcccHH--------------------------HHHHHH----------------HHHHHHHHhCCcc--hhcccCChHHH
Q 023675          152 KAEDRV--------------------------ENIRRI----------------GEVAKLFADAGVI--CIACLISPYRK  187 (279)
Q Consensus       152 ~~~~~~--------------------------~~~~~v----------------~~~~~~~~~~~~~--~i~~~~~~~~~  187 (279)
                      ..+...                          ..+...                ..+..++...++.  ..+..+|+|++
T Consensus        83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGek  162 (635)
T PRK11147         83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWL  162 (635)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHH
Confidence            111000                          000000                0111122222221  12445788999


Q ss_pred             HH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675          188 DR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       188 ~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                      +| .++++++.+|++  ++||||++.|+......+.+.+..
T Consensus       163 qRv~LAraL~~~P~l--LLLDEPt~~LD~~~~~~L~~~L~~  201 (635)
T PRK11147        163 RKAALGRALVSNPDV--LLLDEPTNHLDIETIEWLEGFLKT  201 (635)
T ss_pred             HHHHHHHHHhcCCCE--EEEcCCCCccCHHHHHHHHHHHHh
Confidence            98 999999999998  999999999999887766665543

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.51  E-value=2e-13  Score=133.04  Aligned_cols=142  Identities=18%  Similarity=0.138  Sum_probs=94.5

Q ss_pred             eEEeecceeec-C-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-cccccccCCCC-Cc
Q 023675           82 ILWHKNSVDKR-D-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDLSF-KA  153 (279)
Q Consensus        82 i~~~~~~~~~~-~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i~~~~~~~~~~-~~  153 (279)
                      ++++|++++|. .     +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.+++.. +.. +.....+ ..
T Consensus         5 i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~-v~Q~~~~~~~   82 (552)
T TIGR03719         5 YTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFNGEARPAPGIKVGY-LPQEPQLDPT   82 (552)
T ss_pred             EEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEE-EeccCCCCCC
Confidence            66777877775 3     349999999999999999999999999999999 8999999987531 110 0000000 00


Q ss_pred             ccHHHHHHH-----------------------------------H-------------HHHHHHHHhCCc---chhcccC
Q 023675          154 EDRVENIRR-----------------------------------I-------------GEVAKLFADAGV---ICIACLI  182 (279)
Q Consensus       154 ~~~~~~~~~-----------------------------------v-------------~~~~~~~~~~~~---~~i~~~~  182 (279)
                      ....+.+..                                   +             ..+...+...++   ...+..+
T Consensus        83 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~L  162 (552)
T TIGR03719        83 KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKL  162 (552)
T ss_pred             CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhc
Confidence            000000000                                   0             000111111222   1234468


Q ss_pred             ChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675          183 SPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       183 ~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                      |+++++| .++++++.+|++  ++||||++.++....+.+.+.+..
T Consensus       163 SgGqkqrv~la~al~~~p~l--LLLDEPt~~LD~~~~~~l~~~L~~  206 (552)
T TIGR03719       163 SGGERRRVALCRLLLSKPDM--LLLDEPTNHLDAESVAWLEQHLQE  206 (552)
T ss_pred             CHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCChHHHHHHHHHHHh
Confidence            8999999 999999999998  999999999999988877766553

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.51  E-value=9.7e-14  Score=115.80  Aligned_cols=118  Identities=20%  Similarity=0.217  Sum_probs=82.2

Q ss_pred             eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHH
Q 023675           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAK  168 (279)
Q Consensus        89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~  168 (279)
                      +...++.||++++|++++|+||||||||||++++..     .+|.+.+++..-.. ....+.|..+     .       .
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~-~~~~~~~~~q-----~-------~   69 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKF-SRNKLIFIDQ-----L-------Q   69 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCccccc-ccccEEEEhH-----H-------H
Confidence            344566799999999999999999999999998842     47888888763211 0111222222     1       1


Q ss_pred             HHHhCCc-----chhcccCChHHHHH-HHHHHhCCC--CCccEEEEeCCccchhccChhhHHHHHh
Q 023675          169 LFADAGV-----ICIACLISPYRKDR-DACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       169 ~~~~~~~-----~~i~~~~~~~~~~r-~~ar~l~~~--~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      .+...++     ......+++++++| .++++++.+  |++  +++|||+..++....+.+.+.++
T Consensus        70 ~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~l--lLlDEPt~~LD~~~~~~l~~~l~  133 (176)
T cd03238          70 FLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTL--FILDEPSTGLHQQDINQLLEVIK  133 (176)
T ss_pred             HHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            1122222     22345678888888 899999999  888  99999999999988777665443

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.50  E-value=1.4e-13  Score=114.64  Aligned_cols=158  Identities=20%  Similarity=0.187  Sum_probs=99.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccccc-------CCCCCc------c-cHHHHHHHHHHH
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-------DLSFKA------E-DRVENIRRIGEV  166 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~-------~~~~~~------~-~~~~~~~~v~~~  166 (279)
                      +|.+++|+|+|||||||+++.|+..+..+   .+.++.|++...+..       .+.+..      + .....+......
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~   77 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAEP---WLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEA   77 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCC---ccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHH
Confidence            47899999999999999999999987422   345566666432211       111111      1 111223333334


Q ss_pred             HHHHHhCCcchhcccCCh-HHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccc-cCcCCCCC
Q 023675          167 AKLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGI-DDPYEPPL  244 (279)
Q Consensus       167 ~~~~~~~~~~~i~~~~~~-~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~-r~~~~~~~  244 (279)
                      +..+...|..++++.... ....++.++.+.. .++..|++++|.+.+.+|..++      .+....+... ...++.+.
T Consensus        78 ~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~-~~~~~v~l~~~~~~l~~R~~~R------~~~~~~~~~~~~~~~~~~~  150 (175)
T cd00227          78 VAAMARAGANVIADDVFLGRAALQDCWRSFVG-LDVLWVGVRCPGEVAEGRETAR------GDRVPGQARKQARVVHAGV  150 (175)
T ss_pred             HHHHHhCCCcEEEeeeccCCHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhc------CCccchHHHHHHHHhcCCC
Confidence            444567788888776544 3444555665544 4677899999999999998543      2222222221 12233344


Q ss_pred             CCceEEEccCCCCCCHHHHHHHHHHHH
Q 023675          245 NCEIVLKQMGDDCPSPADMVETVVSYL  271 (279)
Q Consensus       245 ~a~~~i~~~~~~~~~~~e~~~~Il~~l  271 (279)
                      ..+++|||   +..++++++++|++.|
T Consensus       151 ~~dl~iDt---s~~s~~e~a~~i~~~l  174 (175)
T cd00227         151 EYDLEVDT---THKTPIECARAIAARV  174 (175)
T ss_pred             cceEEEEC---CCCCHHHHHHHHHHhc
Confidence            46799999   8889999999999876

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.50  E-value=8e-14  Score=135.23  Aligned_cols=142  Identities=17%  Similarity=0.204  Sum_probs=98.9

Q ss_pred             CeEEeecceeec----------------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc
Q 023675           81 NILWHKNSVDKR----------------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG  144 (279)
Q Consensus        81 ~i~~~~~~~~~~----------------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~  144 (279)
                      .++++++++.|.                ++.||++++|++++|+|+||||||||+++|+|++ . .+|.|+++|.++...
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-~~G~i~~~g~~i~~~  352 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-SQGEIWFDGQPLHNL  352 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCcEEEECCEEcccc
Confidence            478888888884                2239999999999999999999999999999998 4 799999999876321


Q ss_pred             -------cccCCCCCcccH----------HHHHHH--------------HHHHHHHHHhCCcc-----hhcccCChHHHH
Q 023675          145 -------LNRDLSFKAEDR----------VENIRR--------------IGEVAKLFADAGVI-----CIACLISPYRKD  188 (279)
Q Consensus       145 -------~~~~~~~~~~~~----------~~~~~~--------------v~~~~~~~~~~~~~-----~i~~~~~~~~~~  188 (279)
                             ....++|.+++.          .+.+..              ...+...+...++.     .....+|+++++
T Consensus       353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q  432 (529)
T PRK15134        353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQ  432 (529)
T ss_pred             chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHH
Confidence                   011223222211          111100              01112223333442     134568899999


Q ss_pred             H-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          189 R-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       189 r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      | .++++++.+|++  ++||||+..++......+++.++
T Consensus       433 rv~la~al~~~p~l--lllDEPt~~LD~~~~~~l~~~l~  469 (529)
T PRK15134        433 RIAIARALILKPSL--IILDEPTSSLDKTVQAQILALLK  469 (529)
T ss_pred             HHHHHHHHhCCCCE--EEeeCCccccCHHHHHHHHHHHH
Confidence            9 999999999998  99999999999998877665443

>PLN03130 ABC transporter C family member; Provisional

Probab=99.50  E-value=6e-14  Score=150.48  Aligned_cols=142  Identities=20%  Similarity=0.226  Sum_probs=99.3

Q ss_pred             CCeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCc-cEEEEcCeec--c--cc--
Q 023675           80 TNILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK-LTYILDGDNC--R--HG--  144 (279)
Q Consensus        80 ~~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~-G~i~ldgd~i--~--~~--  144 (279)
                      ..|+++|++|+|+.        +.||++++|+.++|+|++|||||||+++|.|.+ +|.+ |.|.+.+.--  .  .+  
T Consensus       613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~GG~I~l~~~Iayv~Q~p~Lf  691 (1622)
T PLN03130        613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-PPRSDASVVIRGTVAYVPQVSWIF  691 (1622)
T ss_pred             CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh-ccCCCceEEEcCeEEEEcCccccC
Confidence            46999999999963        238999999999999999999999999999999 8888 8998766321  0  01  


Q ss_pred             ---cccCCCCCcccHHHHHHHHHHHHHHHHh-----CCc----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675          145 ---LNRDLSFKAEDRVENIRRIGEVAKLFAD-----AGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (279)
Q Consensus       145 ---~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~  211 (279)
                         +..++-+...-..+.+..+.+.+.+-.+     .|.    ...+..+|+||++| .+||++.+++++  ++||+|++
T Consensus       692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I--lLLDEptS  769 (1622)
T PLN03130        692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV--YIFDDPLS  769 (1622)
T ss_pred             CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE--EEECCCcc
Confidence               1111222111112233333333322111     122    12344689999999 999999999988  99999999


Q ss_pred             chhccChhhHHHH
Q 023675          212 VCEARDPKGLYKL  224 (279)
Q Consensus       212 ~l~~R~~~~l~~~  224 (279)
                      .++....+.+++.
T Consensus       770 ALD~~~~~~I~~~  782 (1622)
T PLN03130        770 ALDAHVGRQVFDK  782 (1622)
T ss_pred             ccCHHHHHHHHHH
Confidence            9999877766543

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.50  E-value=1.4e-13  Score=132.79  Aligned_cols=141  Identities=16%  Similarity=0.199  Sum_probs=97.2

Q ss_pred             CeEEeeccee-ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcc
Q 023675           81 NILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (279)
Q Consensus        81 ~i~~~~~~~~-~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~  154 (279)
                      .++++++++. ..++.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|+++...     ....++|.++
T Consensus       257 ~l~~~~~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q  335 (501)
T PRK11288        257 RLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT-RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPE  335 (501)
T ss_pred             EEEEeccccCCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC-cCCCceEEECCEECCCCCHHHHHhCCCEEcCc
Confidence            3677777643 235679999999999999999999999999999999 89999999999876321     0011111111


Q ss_pred             c-----------HHHHH------------------HHHHHHHHHHHhCCc-----chhcccCChHHHHH-HHHHHhCCCC
Q 023675          155 D-----------RVENI------------------RRIGEVAKLFADAGV-----ICIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       155 ~-----------~~~~~------------------~~v~~~~~~~~~~~~-----~~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      .           ..+.+                  .........+...++     ...+..+|+++++| .++++++.+|
T Consensus       336 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p  415 (501)
T PRK11288        336 DRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDM  415 (501)
T ss_pred             CHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCC
Confidence            1           00100                  000111222223333     12355688999999 8999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHH
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++  ++||||+..++......+++.
T Consensus       416 ~l--llLDEPt~~LD~~~~~~l~~~  438 (501)
T PRK11288        416 KV--ILLDEPTRGIDVGAKHEIYNV  438 (501)
T ss_pred             CE--EEEcCCCCCCCHhHHHHHHHH
Confidence            98  999999999999988776544

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.50  E-value=2.1e-13  Score=134.92  Aligned_cols=143  Identities=16%  Similarity=0.130  Sum_probs=97.6

Q ss_pred             CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-ccCC-CCCc
Q 023675           81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-NRDL-SFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-~~~~-~~~~  153 (279)
                      .+++++++++|.++     .||.+.+|++++|+|+||||||||+++|+|.+ .|++|.|++ |..+.-+. .... .+.+
T Consensus       319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~-~~~~~i~y~~q~~~~l~~  396 (635)
T PRK11147        319 VFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSGRIHC-GTKLEVAYFDQHRAELDP  396 (635)
T ss_pred             eEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEE-CCCcEEEEEeCcccccCC
Confidence            58999999998653     49999999999999999999999999999999 899999998 44331110 0000 0100


Q ss_pred             c-cHHHHHHH----------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675          154 E-DRVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (279)
Q Consensus       154 ~-~~~~~~~~----------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R  216 (279)
                      . ...+.+..          ...+...+...++.     ..+..+|+|+++| .++++++.+|++  ++||||+..++..
T Consensus       397 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l--LlLDEPt~~LD~~  474 (635)
T PRK11147        397 EKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL--LILDEPTNDLDVE  474 (635)
T ss_pred             CCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHH
Confidence            0 00111100          01122222233331     2345689999999 899999999998  9999999999998


Q ss_pred             ChhhHHHHHhC
Q 023675          217 DPKGLYKLARE  227 (279)
Q Consensus       217 ~~~~l~~~~~~  227 (279)
                      ....+.+.+..
T Consensus       475 ~~~~l~~~l~~  485 (635)
T PRK11147        475 TLELLEELLDS  485 (635)
T ss_pred             HHHHHHHHHHh
Confidence            87766665553

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.50  E-value=2.2e-13  Score=117.08  Aligned_cols=126  Identities=20%  Similarity=0.128  Sum_probs=82.7

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEE-EcCeecccccccCCCCCcc-cHHHHHHHHH------
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-LDGDNCRHGLNRDLSFKAE-DRVENIRRIG------  164 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~-ldgd~i~~~~~~~~~~~~~-~~~~~~~~v~------  164 (279)
                      ++.||++++|++++|+|+||||||||+++|+|.+ .|++|.|. +++..+.-+..  ..+.+. ...+++....      
T Consensus         4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~sG~i~~~~~~~~~~~~~--~~l~~~ltv~enl~~~~~~~~~~   80 (213)
T PRK15177          4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD-APDEGDFIGLRGDALPLGAN--SFILPGLTGEENARMMASLYGLD   80 (213)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCCCEEEecCceeccccc--cccCCcCcHHHHHHHHHHHcCCC
Confidence            4568899999999999999999999999999999 89999997 88765421100  001000 1111111000      


Q ss_pred             --HHHHH-HHhCC----cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          165 --EVAKL-FADAG----VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       165 --~~~~~-~~~~~----~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                        +.... ....+    ....+...++++++| .++++++.+|++  +++|||+..++....+.+.+
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~l--lllDEP~~~lD~~~~~~~~~  145 (213)
T PRK15177         81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRL--YIADGKLYTGDNATQLRMQA  145 (213)
T ss_pred             HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCE--EEECCCCccCCHHHHHHHHH
Confidence              00000 00011    112344578888888 899999999998  99999999988776665544

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.50  E-value=2.2e-13  Score=129.43  Aligned_cols=143  Identities=20%  Similarity=0.200  Sum_probs=96.7

Q ss_pred             eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC---CccEEEEcCeecccc-----
Q 023675           82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDGDNCRHG-----  144 (279)
Q Consensus        82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~---~~G~i~ldgd~i~~~-----  144 (279)
                      ++++|+++.|.         ++.||++.+||+++|+|.|||||||++++|.|+++..   .+|+|.++|.++...     
T Consensus         6 L~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~   85 (539)
T COG1123           6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREM   85 (539)
T ss_pred             EEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHH
Confidence            45555555443         4559999999999999999999999999999999433   289999999876311     


Q ss_pred             ---cccCCCCCcccH----------HHHH-------------HHHHHHHHHHHhCCcc------hhcccCChHHHHH-HH
Q 023675          145 ---LNRDLSFKAEDR----------VENI-------------RRIGEVAKLFADAGVI------CIACLISPYRKDR-DA  191 (279)
Q Consensus       145 ---~~~~~~~~~~~~----------~~~~-------------~~v~~~~~~~~~~~~~------~i~~~~~~~~~~r-~~  191 (279)
                         ....+++.+++.          ..++             ........++..-++-      .+...+|++++|| -+
T Consensus        86 r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~i  165 (539)
T COG1123          86 RKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMI  165 (539)
T ss_pred             HHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHH
Confidence               111222222211          0000             0111222333332321      2555689999999 78


Q ss_pred             HHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       192 ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      |++++.+|++  +++|||+..|+.-.+..+++.++
T Consensus       166 AmALa~~P~L--LIaDEPTTaLDvt~q~qIL~llk  198 (539)
T COG1123         166 AMALALKPKL--LIADEPTTALDVTTQAQILDLLK  198 (539)
T ss_pred             HHHHhCCCCE--EEECCCccccCHHHHHHHHHHHH
Confidence            9999999998  99999999999988877655443

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.50  E-value=1.4e-13  Score=121.47  Aligned_cols=125  Identities=18%  Similarity=0.202  Sum_probs=83.0

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEE-----------EcCeeccccc----cc--CCCCCcc---
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-----------LDGDNCRHGL----NR--DLSFKAE---  154 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~-----------ldgd~i~~~~----~~--~~~~~~~---  154 (279)
                      .+ .+.+|++++|+|+||||||||+++|+|++ .|++|.|+           ++|.++....    ..  .+++..+   
T Consensus        20 i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~-~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~   97 (255)
T cd03236          20 LP-VPREGQVLGLVGPNGIGKSTALKILAGKL-KPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVD   97 (255)
T ss_pred             CC-CCCCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhc
Confidence            35 48999999999999999999999999999 89999996           7787663210    00  0111000   


Q ss_pred             --c------HHHHH---HHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675          155 --D------RVENI---RRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       155 --~------~~~~~---~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~  218 (279)
                        .      ....+   ........++...++.    .....+++++++| .++++++.+|++  +++|||++.++....
T Consensus        98 ~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i--lllDEPts~LD~~~~  175 (255)
T cd03236          98 LIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF--YFFDEPSSYLDIKQR  175 (255)
T ss_pred             cCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCCCCCHHHH
Confidence              0      00000   0001122223333332    2334578888888 999999999988  999999999999877


Q ss_pred             hhHHH
Q 023675          219 KGLYK  223 (279)
Q Consensus       219 ~~l~~  223 (279)
                      +.++.
T Consensus       176 ~~l~~  180 (255)
T cd03236         176 LNAAR  180 (255)
T ss_pred             HHHHH
Confidence            65444

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2.8e-13  Score=111.90  Aligned_cols=124  Identities=18%  Similarity=0.194  Sum_probs=83.5

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc----------cCCCCCc----ccHHHH
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----------RDLSFKA----EDRVEN  159 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~----------~~~~~~~----~~~~~~  159 (279)
                      +.+|++.+|+.+.|.|+||||||||+++|+|++ .|.+|.|++++..+.....          -..++..    .+.-.+
T Consensus        20 ~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl-~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F   98 (209)
T COG4133          20 DLSFTLNAGEALQITGPNGAGKTTLLRILAGLL-RPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHF   98 (209)
T ss_pred             ceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc-CCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHH
Confidence            348899999999999999999999999999999 9999999999987743211          0111111    111112


Q ss_pred             HHHHHH------HHHHHHhCCcc---h-hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675          160 IRRIGE------VAKLFADAGVI---C-IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       160 ~~~v~~------~~~~~~~~~~~---~-i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      +..+..      +...+...|+.   . -..++|.+++.| +++|-.+..+++  ++||||+..+++.....
T Consensus        99 ~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL--WiLDEP~taLDk~g~a~  168 (209)
T COG4133          99 WQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL--WILDEPFTALDKEGVAL  168 (209)
T ss_pred             HHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc--eeecCcccccCHHHHHH
Confidence            222111      11111222222   2 234577777777 888888888788  89999999998876554

>PLN03211 ABC transporter G-25; Provisional

Probab=99.48  E-value=1.1e-13  Score=136.98  Aligned_cols=129  Identities=21%  Similarity=0.213  Sum_probs=88.2

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC--ccEEEEcCeecccccccCCCCCccc--------HHHHHHH
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCRHGLNRDLSFKAED--------RVENIRR  162 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~--~G~i~ldgd~i~~~~~~~~~~~~~~--------~~~~~~~  162 (279)
                      ++.|+++++|++++|+|+||||||||+++|+|++ .++  +|.|.+||.++.......++|.+++        .++.+..
T Consensus        85 ~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~-~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~  163 (659)
T PLN03211         85 NGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI-QGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVF  163 (659)
T ss_pred             eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHH
Confidence            3459999999999999999999999999999998 564  8999999987632211112221111        1111100


Q ss_pred             ---------------HHHHHHHHHhCCcch---------hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675          163 ---------------IGEVAKLFADAGVIC---------IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (279)
Q Consensus       163 ---------------v~~~~~~~~~~~~~~---------i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~  217 (279)
                                     ...+..++...++..         ....+|+++++| .++++++.+|++  ++||||+..++...
T Consensus       164 ~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i--LlLDEPtsgLD~~~  241 (659)
T PLN03211        164 CSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL--LILDEPTSGLDATA  241 (659)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE--EEEeCCCCCcCHHH
Confidence                           011122233333322         133588899998 999999999988  99999999999888


Q ss_pred             hhhHHHH
Q 023675          218 PKGLYKL  224 (279)
Q Consensus       218 ~~~l~~~  224 (279)
                      ...+.+.
T Consensus       242 ~~~l~~~  248 (659)
T PLN03211        242 AYRLVLT  248 (659)
T ss_pred             HHHHHHH
Confidence            7765543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.48  E-value=3.1e-13  Score=133.73  Aligned_cols=143  Identities=17%  Similarity=0.119  Sum_probs=98.5

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe-ecccccccC--CCCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRD--LSFK  152 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd-~i~~~~~~~--~~~~  152 (279)
                      .+++++++++|.+     +.||.+.+|++++|+|+||||||||+++|+|.+ .|++|.|.+++. .+.. +...  ..+.
T Consensus       312 ~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~~~~~igy-~~Q~~~~~l~  389 (638)
T PRK10636        312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSGEIGLAKGIKLGY-FAQHQLEFLR  389 (638)
T ss_pred             eEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCCEEEEE-ecCcchhhCC
Confidence            5889999998864     349999999999999999999999999999999 899999999742 2210 0000  0011


Q ss_pred             cc-cHHHHHHH------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675          153 AE-DRVENIRR------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (279)
Q Consensus       153 ~~-~~~~~~~~------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~  219 (279)
                      .. .....+..      ...+...+...++.     ..+..+|+|+++| .++++++.+|++  ++||||+..|+.....
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~l--LlLDEPt~~LD~~~~~  467 (638)
T PRK10636        390 ADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNL--LLLDEPTNHLDLDMRQ  467 (638)
T ss_pred             ccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHH
Confidence            11 00111100      01122223333332     1345689999999 899999999998  9999999999998877


Q ss_pred             hHHHHHhC
Q 023675          220 GLYKLARE  227 (279)
Q Consensus       220 ~l~~~~~~  227 (279)
                      .+.+.+..
T Consensus       468 ~l~~~L~~  475 (638)
T PRK10636        468 ALTEALID  475 (638)
T ss_pred             HHHHHHHH
Confidence            76665543

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.48  E-value=4.5e-13  Score=130.63  Aligned_cols=143  Identities=15%  Similarity=0.132  Sum_probs=98.1

Q ss_pred             CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCC-CCCc
Q 023675           81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDL-SFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~-~~~~  153 (279)
                      .+++++++++|.++     .||.+++|++++|+|+||||||||+++|+|.+ .|.+|.|+++++ +.-+ +.... .+.+
T Consensus       322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i~~~~~-~~i~~v~q~~~~~~~  399 (552)
T TIGR03719       322 VIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE-QPDSGTIKIGET-VKLAYVDQSRDALDP  399 (552)
T ss_pred             EEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEECCc-eEEEEEeCCccccCC
Confidence            58899999988643     49999999999999999999999999999999 899999998543 2100 00000 0000


Q ss_pred             -ccHHHHHHH----------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675          154 -EDRVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (279)
Q Consensus       154 -~~~~~~~~~----------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R  216 (279)
                       ....+.+..          .......+...++.     ..+..+|+|+++| .++++++.+|++  ++||||+..++..
T Consensus       400 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l--llLDEPt~~LD~~  477 (552)
T TIGR03719       400 NKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV--LLLDEPTNDLDVE  477 (552)
T ss_pred             CCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCHH
Confidence             000000000          00011223333332     1345688999998 999999999998  9999999999998


Q ss_pred             ChhhHHHHHhC
Q 023675          217 DPKGLYKLARE  227 (279)
Q Consensus       217 ~~~~l~~~~~~  227 (279)
                      ....+.+.+..
T Consensus       478 ~~~~l~~~l~~  488 (552)
T TIGR03719       478 TLRALEEALLE  488 (552)
T ss_pred             HHHHHHHHHHH
Confidence            88877766554

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.48  E-value=9.5e-14  Score=148.45  Aligned_cols=142  Identities=19%  Similarity=0.230  Sum_probs=95.2

Q ss_pred             CCeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE-EEcCeec--c------
Q 023675           80 TNILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-ILDGDNC--R------  142 (279)
Q Consensus        80 ~~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i-~ldgd~i--~------  142 (279)
                      ..|+++|++|+|+.        +.||++++|+.++|+|++|||||||+++|.|.+ +|.+|.+ .+.+.--  .      
T Consensus       613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~G~i~~~~~~Iayv~Q~p~Lf  691 (1495)
T PLN03232        613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL-SHAETSSVVIRGSVAYVPQVSWIF  691 (1495)
T ss_pred             CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-cccCCCEEEecCcEEEEcCccccc
Confidence            46999999999964        228999999999999999999999999999999 7777643 3333110  0      


Q ss_pred             -cccccCCCCCcccHHHHHHHHHHHHHH---HH--hCCc----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675          143 -HGLNRDLSFKAEDRVENIRRIGEVAKL---FA--DAGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (279)
Q Consensus       143 -~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~--~~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~  211 (279)
                       ..+..++.+......+.+..+.+.+.+   +.  ..|.    ...+..+|+||++| .+||++.+++++  ++||+|++
T Consensus       692 ~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I--lLLDEptS  769 (1495)
T PLN03232        692 NATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI--YIFDDPLS  769 (1495)
T ss_pred             cccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCE--EEEcCCcc
Confidence             001111122111111223333232222   11  1122    12344689999999 999999999998  99999999


Q ss_pred             chhccChhhHHHH
Q 023675          212 VCEARDPKGLYKL  224 (279)
Q Consensus       212 ~l~~R~~~~l~~~  224 (279)
                      .++....+.+++.
T Consensus       770 aLD~~t~~~I~~~  782 (1495)
T PLN03232        770 ALDAHVAHQVFDS  782 (1495)
T ss_pred             ccCHHHHHHHHHH
Confidence            9999887766654

>PRK13409 putative ATPase RIL; Provisional

Probab=99.47  E-value=5.3e-13  Score=130.71  Aligned_cols=140  Identities=15%  Similarity=0.051  Sum_probs=94.3

Q ss_pred             CeEEeecceeecC----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc-c
Q 023675           81 NILWHKNSVDKRD----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-D  155 (279)
Q Consensus        81 ~i~~~~~~~~~~~----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~-~  155 (279)
                      .+++++++++|.+    ..+|++.+|++++|+|+||||||||+++|+|.+ .|++|.|.++- .+.. .......... .
T Consensus       340 ~l~~~~ls~~~~~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~-~p~~G~I~~~~-~i~y-~~Q~~~~~~~~t  416 (590)
T PRK13409        340 LVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KPDEGEVDPEL-KISY-KPQYIKPDYDGT  416 (590)
T ss_pred             EEEEcceEEEECCEEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEee-eEEE-ecccccCCCCCc
Confidence            4788888888854    347888999999999999999999999999999 89999998862 1210 0000010000 0


Q ss_pred             HHHHHHHH-------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          156 RVENIRRI-------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       156 ~~~~~~~v-------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      ..+.+...       .....++...++..    .+..+|+++++| .++++++.+|++  ++||||+..++......+.+
T Consensus       417 v~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l--lLLDEPt~~LD~~~~~~l~~  494 (590)
T PRK13409        417 VEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL--YLLDEPSAHLDVEQRLAVAK  494 (590)
T ss_pred             HHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHH
Confidence            11111100       01112223333322    345689999999 899999999998  99999999999887776554


Q ss_pred             HH
Q 023675          224 LA  225 (279)
Q Consensus       224 ~~  225 (279)
                      .+
T Consensus       495 ~l  496 (590)
T PRK13409        495 AI  496 (590)
T ss_pred             HH
Confidence            43

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.47  E-value=5.7e-13  Score=129.99  Aligned_cols=143  Identities=16%  Similarity=0.142  Sum_probs=98.1

Q ss_pred             CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCC-CCCc
Q 023675           81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDL-SFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~-~~~~  153 (279)
                      .+++++++++|.++     .||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++++ ++-+ +.... .+.+
T Consensus       324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~-~~i~~v~q~~~~~~~  401 (556)
T PRK11819        324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE-QPDSGTIKIGET-VKLAYVDQSRDALDP  401 (556)
T ss_pred             EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCc-eEEEEEeCchhhcCC
Confidence            58999999988643     49999999999999999999999999999999 899999999543 2100 00000 0000


Q ss_pred             -ccHHHHHHH----------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675          154 -EDRVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (279)
Q Consensus       154 -~~~~~~~~~----------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R  216 (279)
                       ....+.+..          .......+...++.     ..+..+|+|+++| .++++++.+|++  ++||||+..++..
T Consensus       402 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~~LD~~  479 (556)
T PRK11819        402 NKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV--LLLDEPTNDLDVE  479 (556)
T ss_pred             CCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHH
Confidence             000011000          00011123333332     1345688999999 899999999998  9999999999998


Q ss_pred             ChhhHHHHHhC
Q 023675          217 DPKGLYKLARE  227 (279)
Q Consensus       217 ~~~~l~~~~~~  227 (279)
                      ....+.+.+..
T Consensus       480 ~~~~l~~~l~~  490 (556)
T PRK11819        480 TLRALEEALLE  490 (556)
T ss_pred             HHHHHHHHHHh
Confidence            88777766554

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.47  E-value=3.2e-13  Score=113.81  Aligned_cols=126  Identities=16%  Similarity=0.175  Sum_probs=87.0

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc-----------c--------------
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----------R--------------  147 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~-----------~--------------  147 (279)
                      +..++.+.+|+++.++|.|||||||+++.|+|.+ .|++|.|++||.++.+.-.           .              
T Consensus        23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l-~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieE  101 (263)
T COG1101          23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-KPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEE  101 (263)
T ss_pred             hcCceeecCCceEEEEcCCCccHHHHHHHhhCcc-ccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHH
Confidence            3459999999999999999999999999999999 9999999999999953210           0              


Q ss_pred             ----------CCCCCcccHHHHHHHH-HHHHHHHHhCC----cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675          148 ----------DLSFKAEDRVENIRRI-GEVAKLFADAG----VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (279)
Q Consensus       148 ----------~~~~~~~~~~~~~~~v-~~~~~~~~~~~----~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~  211 (279)
                                .-++...-..++.... ..+..+  ..|    +..-+..+|++++|- ..+.+.+..|++  ++|||-++
T Consensus       102 Nl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l--~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pki--LLLDEHTA  177 (263)
T COG1101         102 NLALAESRGKKRGLSSALNERRRSSFRERLARL--GLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKI--LLLDEHTA  177 (263)
T ss_pred             HHHHHHhcCcccccchhhhHHHHHHHHHHHhhc--ccchhhhhcChhhhccchHHHHHHHHHHhcCCCcE--EEecchhh
Confidence                      0011110000000000 011111  112    122455688888876 888899999988  99999999


Q ss_pred             chhccChhhHHH
Q 023675          212 VCEARDPKGLYK  223 (279)
Q Consensus       212 ~l~~R~~~~l~~  223 (279)
                      .++++...-+++
T Consensus       178 ALDPkta~~vm~  189 (263)
T COG1101         178 ALDPKTAEFVME  189 (263)
T ss_pred             cCCcchHHHHHH
Confidence            999998776553

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.46  E-value=3.7e-13  Score=133.49  Aligned_cols=141  Identities=19%  Similarity=0.218  Sum_probs=97.2

Q ss_pred             CeEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675           81 NILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------  144 (279)
Q Consensus        81 ~i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------  144 (279)
                      .++++|++++|..         +.||++++|++++|+|+||||||||+++|+|++ +|++|.+++||+++...       
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~i~~~~~~~~~~   82 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD-KPTSGTYRVAGQDVATLDADALAQ   82 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEcCcCCHHHHHH
Confidence            3677787777742         338999999999999999999999999999999 89999999999887421       


Q ss_pred             -cccCCCCCcc--------cHHHHHH------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675          145 -LNRDLSFKAE--------DRVENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       145 -~~~~~~~~~~--------~~~~~~~------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                       ....++|.++        ...+.+.            ........+...++..    ....+++++++| .++++++.+
T Consensus        83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~  162 (648)
T PRK10535         83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG  162 (648)
T ss_pred             HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence             0111111111        0011110            0011122222233322    344578888888 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      |++  +++|||+..++....+.+.+.
T Consensus       163 P~l--LllDEP~~gLD~~s~~~l~~l  186 (648)
T PRK10535        163 GQV--ILADEPTGALDSHSGEEVMAI  186 (648)
T ss_pred             CCE--EEEECCCCCCCHHHHHHHHHH
Confidence            998  999999999999887765443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.46  E-value=4.6e-13  Score=128.73  Aligned_cols=134  Identities=21%  Similarity=0.204  Sum_probs=90.2

Q ss_pred             CeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe-ecccccccCCCCCcc
Q 023675           81 NILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRDLSFKAE  154 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd-~i~~~~~~~~~~~~~  154 (279)
                      .|.+.+++.+|.++.     ++++.+|+.++|||+||+|||||+++|+|.+ .|+.|.|...+. .+. .+.....+...
T Consensus         3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~-~~~~G~i~~~~~~~v~-~l~Q~~~~~~~   80 (530)
T COG0488           3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPDSGEVTRPKGLRVG-YLSQEPPLDPE   80 (530)
T ss_pred             eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC-cCCCCeEeecCCceEE-EeCCCCCcCCC
Confidence            466778888886543     9999999999999999999999999999999 899999988874 221 11111111110


Q ss_pred             ------------cHHHHHHHH-------------------------------HHHHHHHHhCCcch---hcccCChHHHH
Q 023675          155 ------------DRVENIRRI-------------------------------GEVAKLFADAGVIC---IACLISPYRKD  188 (279)
Q Consensus       155 ------------~~~~~~~~v-------------------------------~~~~~~~~~~~~~~---i~~~~~~~~~~  188 (279)
                                  ...+..+..                               ..+..++...++..   .+..+|++++.
T Consensus        81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~  160 (530)
T COG0488          81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRR  160 (530)
T ss_pred             ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence                        000000000                               11222222223222   34567888888


Q ss_pred             H-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675          189 R-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       189 r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~  218 (279)
                      | .+|++++.+|++  ++||||+++|+--..
T Consensus       161 Rv~LA~aL~~~pDl--LLLDEPTNHLD~~~i  189 (530)
T COG0488         161 RVALARALLEEPDL--LLLDEPTNHLDLESI  189 (530)
T ss_pred             HHHHHHHHhcCCCE--EEEcCCCcccCHHHH
Confidence            8 899999999999  999999999976543

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.46  E-value=1.6e-13  Score=119.18  Aligned_cols=127  Identities=17%  Similarity=0.160  Sum_probs=83.7

Q ss_pred             eecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-------------ccCCCCCcccH
Q 023675           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------------NRDLSFKAEDR  156 (279)
Q Consensus        90 ~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-------------~~~~~~~~~~~  156 (279)
                      .+..+.||++++|++++++|+||+||||++|+|.|++ .|.+|.|.++|.+-....             ....-++....
T Consensus        38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll-~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~  116 (325)
T COG4586          38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL-LPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL  116 (325)
T ss_pred             hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc-ccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence            3445669999999999999999999999999999999 899999999997653210             00000000000


Q ss_pred             --------------HHHHHHHHHHHHHHHhCC-cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675          157 --------------VENIRRIGEVAKLFADAG-VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (279)
Q Consensus       157 --------------~~~~~~v~~~~~~~~~~~-~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~  219 (279)
                                    ..+.+++..+..++.-.+ +..-+..+|.+++.| +++.++++.|++  ++||||+=.|+--.+.
T Consensus       117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~V--LfLDEpTvgLDV~aq~  193 (325)
T COG4586         117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKV--LFLDEPTVGLDVNAQA  193 (325)
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcE--EEecCCccCcchhHHH
Confidence                          111122222222221111 222344578888888 889999999988  9999997777654443

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.46  E-value=3.2e-13  Score=143.35  Aligned_cols=140  Identities=14%  Similarity=0.251  Sum_probs=96.1

Q ss_pred             eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEEEcCeecccccccCCC
Q 023675           82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHGLNRDLS  150 (279)
Q Consensus        82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ldgd~i~~~~~~~~~  150 (279)
                      ++|+|++++|.         ++.|+.+++|++++|+|+||||||||+++|+|++..  +.+|.|.+||.++...+...++
T Consensus       760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~  839 (1394)
T TIGR00956       760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIG  839 (1394)
T ss_pred             EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhccee
Confidence            68999888774         233899999999999999999999999999999831  6789999999887432222222


Q ss_pred             CCccc--------HHHHHHH---------------HHHHHHHHHhCCcch----hcc----cCChHHHHH-HHHHHhCCC
Q 023675          151 FKAED--------RVENIRR---------------IGEVAKLFADAGVIC----IAC----LISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       151 ~~~~~--------~~~~~~~---------------v~~~~~~~~~~~~~~----i~~----~~~~~~~~r-~~ar~l~~~  198 (279)
                      |.+++        .++.+..               ...+..++...++..    .+.    .+++++++| .++++++.+
T Consensus       840 yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~  919 (1394)
T TIGR00956       840 YVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAK  919 (1394)
T ss_pred             eecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcC
Confidence            22221        1111110               011112222223221    122    588899998 999999999


Q ss_pred             CC-ccEEEEeCCccchhccChhhHHH
Q 023675          199 GD-FIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       199 ~~-~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      |+ +  ++||||++.++......+.+
T Consensus       920 P~~i--LlLDEPTsgLD~~~~~~i~~  943 (1394)
T TIGR00956       920 PKLL--LFLDEPTSGLDSQTAWSICK  943 (1394)
T ss_pred             CCeE--EEEcCCCCCCCHHHHHHHHH
Confidence            96 7  99999999999987766544

>PLN03073 ABC transporter F family; Provisional

Probab=99.46  E-value=9.3e-13  Score=131.47  Aligned_cols=143  Identities=15%  Similarity=0.087  Sum_probs=97.6

Q ss_pred             CCeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-cccccccC--CC
Q 023675           80 TNILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRD--LS  150 (279)
Q Consensus        80 ~~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i~~~~~~~--~~  150 (279)
                      ..++++++++.|..      +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|++++.. +. .+...  ..
T Consensus       507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll-~p~~G~I~~~~~~~ig-yv~Q~~~~~  584 (718)
T PLN03073        507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL-QPSSGTVFRSAKVRMA-VFSQHHVDG  584 (718)
T ss_pred             ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCceEEECCceeEE-EEecccccc
Confidence            35899999999953      238999999999999999999999999999999 8999999987632 10 00000  00


Q ss_pred             CCccc--HHHHHHH-----HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675          151 FKAED--RVENIRR-----IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (279)
Q Consensus       151 ~~~~~--~~~~~~~-----v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~  217 (279)
                      +....  .......     -..+...+...++.     ..+..+|+++++| .++++++.+|++  ++||||+..++...
T Consensus       585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~l--LLLDEPT~~LD~~s  662 (718)
T PLN03073        585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI--LLLDEPSNHLDLDA  662 (718)
T ss_pred             CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHH
Confidence            00000  0000000     01122233333432     1345689999999 899999999998  99999999999987


Q ss_pred             hhhHHHHHh
Q 023675          218 PKGLYKLAR  226 (279)
Q Consensus       218 ~~~l~~~~~  226 (279)
                      ...+.+.+.
T Consensus       663 ~~~l~~~L~  671 (718)
T PLN03073        663 VEALIQGLV  671 (718)
T ss_pred             HHHHHHHHH
Confidence            766665544

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.45  E-value=8.7e-14  Score=121.28  Aligned_cols=122  Identities=18%  Similarity=0.248  Sum_probs=86.7

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---c-----ccCCCCCcccHH---------
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---L-----NRDLSFKAEDRV---------  157 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~-----~~~~~~~~~~~~---------  157 (279)
                      ++|..+...+.+|.|+|||||||+.|+++|+. .|+.|.|.++|+.+.+.   +     ...++|.+++-+         
T Consensus        17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~-rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg   95 (352)
T COG4148          17 ANFTLPARGITALFGPSGSGKTSLINMIAGLT-RPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG   95 (352)
T ss_pred             EeccCCCCceEEEecCCCCChhhHHHHHhccC-CccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence            46777776899999999999999999999999 99999999999877432   1     123444444321         


Q ss_pred             -----HH---HHHHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675          158 -----EN---IRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (279)
Q Consensus       158 -----~~---~~~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~  222 (279)
                           .+   .....++..++   |+-.    ....+|++++|| ++.|+++..|++  +++|||++.++.--++.++
T Consensus        96 NL~YG~~~~~~~~fd~iv~lL---GI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~L--LLmDEPLaSLD~~RK~Eil  168 (352)
T COG4148          96 NLRYGMWKSMRAQFDQLVALL---GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPEL--LLMDEPLASLDLPRKREIL  168 (352)
T ss_pred             chhhhhcccchHhHHHHHHHh---CcHHHHhhCCCccCcchhhHHHHHHHHhcCCCe--eeecCchhhcccchhhHHH
Confidence                 00   01112222221   2222    334588999999 999999999998  9999999999876665543

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.44  E-value=4.6e-13  Score=144.32  Aligned_cols=142  Identities=17%  Similarity=0.193  Sum_probs=101.7

Q ss_pred             CCeEEeecceeec-------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc---ccCC
Q 023675           80 TNILWHKNSVDKR-------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDL  149 (279)
Q Consensus        80 ~~i~~~~~~~~~~-------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~---~~~~  149 (279)
                      ..+++++++..|.       ++.||.+.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++....   ...+
T Consensus       927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl-~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL-PPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred             ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC-CCCceEEEECCEECcchHHHHhhcE
Confidence            4688999988884       2339999999999999999999999999999999 899999999998874211   1122


Q ss_pred             CCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          150 SFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       150 ~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                      ++.++.        ..+.+..            -.++...+...++..    ....+|+|+++| .++++++.+|++  +
T Consensus      1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV--L 1083 (2272)
T TIGR01257      1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV--V 1083 (2272)
T ss_pred             EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--E
Confidence            222221        1111110            011222333334322    345688999998 999999999998  9


Q ss_pred             EEeCCccchhccChhhHHHH
Q 023675          205 FMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +||||++.++....+.+.+.
T Consensus      1084 LLDEPTSGLDp~sr~~l~~l 1103 (2272)
T TIGR01257      1084 VLDEPTSGVDPYSRRSIWDL 1103 (2272)
T ss_pred             EEECCCcCCCHHHHHHHHHH
Confidence            99999999999887765543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.43  E-value=9e-13  Score=108.72  Aligned_cols=148  Identities=20%  Similarity=0.265  Sum_probs=91.0

Q ss_pred             EcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----ccccCCCCCcccHHHHHHHHHHHHHHHH-hCCcchhccc
Q 023675          108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRIGEVAKLFA-DAGVICIACL  181 (279)
Q Consensus       108 vG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~i~~~  181 (279)
                      +|+|||||||+++.|++.+.     .+++|+|.+..     .....+.+....+..+...+...+.... ..+..+++ +
T Consensus         1 ~G~sGsGKSTla~~la~~l~-----~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~   74 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLH-----AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-C   74 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhC-----CeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-E
Confidence            59999999999999999983     56999987521     1112234444444455555555444333 22332333 4


Q ss_pred             CChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCC---CCccccCcCCCCCCC--ce-EEEccCC
Q 023675          182 ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK---GFTGIDDPYEPPLNC--EI-VLKQMGD  255 (279)
Q Consensus       182 ~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~---~~~~~r~~~~~~~~a--~~-~i~~~~~  255 (279)
                      .......|+.++.  ..++|..+++++|.+.+.+|+..+      .++..   .+..+...+++|...  ++ +++    
T Consensus        75 s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl~~R------~~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id----  142 (163)
T PRK11545         75 SALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRLKAR------KGHFFKTQMLVTQFETLQEPGADETDVLVVD----  142 (163)
T ss_pred             ecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHHHhc------cCCCCCHHHHHHHHHHcCCCCCCCCCEEEEe----
Confidence            4455666777776  334677799999999999998543      33321   112223335555432  23 344    


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 023675          256 DCPSPADMVETVVSYLDE  273 (279)
Q Consensus       256 ~~~~~~e~~~~Il~~l~~  273 (279)
                      ...++++++.+++.++++
T Consensus       143 ~~~~~~~~~~~~~~~~~~  160 (163)
T PRK11545        143 IDQPLEGVVASTIEVIKK  160 (163)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            456889999999998865

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.43  E-value=1.1e-12  Score=112.70  Aligned_cols=130  Identities=20%  Similarity=0.097  Sum_probs=86.4

Q ss_pred             ecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc-----------
Q 023675           86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-----------  154 (279)
Q Consensus        86 ~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~-----------  154 (279)
                      ...+....+.||++.+|+.++|+|+||||||||+++|+|.+ .|++|.|.++|+... .+....+|.++           
T Consensus        37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~Pt~G~v~v~G~v~~-li~lg~Gf~pelTGreNi~l~~  114 (249)
T COG1134          37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-KPTSGKVKVTGKVAP-LIELGAGFDPELTGRENIYLRG  114 (249)
T ss_pred             cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-CCCCceEEEcceEeh-hhhcccCCCcccchHHHHHHHH
Confidence            33556677889999999999999999999999999999999 999999999998541 11122233333           


Q ss_pred             --------cHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675          155 --------DRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       155 --------~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                              +..+.+..+.+.+.+ .+.-...+-.+.++...+...+-+...+|++  +++||-++.-+....+.
T Consensus       115 ~~~G~~~~ei~~~~~eIieFaEL-G~fi~~PvktYSSGM~aRLaFsia~~~~pdI--LllDEvlavGD~~F~~K  185 (249)
T COG1134         115 LILGLTRKEIDEKVDEIIEFAEL-GDFIDQPVKTYSSGMYARLAFSVATHVEPDI--LLLDEVLAVGDAAFQEK  185 (249)
T ss_pred             HHhCccHHHHHHHHHHHHHHHHH-HHHhhCchhhccHHHHHHHHHhhhhhcCCCE--EEEehhhhcCCHHHHHH
Confidence                    222222222222211 1111122334555555444777777778888  99999988888776554

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.43  E-value=5.1e-13  Score=144.00  Aligned_cols=142  Identities=14%  Similarity=0.140  Sum_probs=101.7

Q ss_pred             CCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCC
Q 023675           80 TNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDL  149 (279)
Q Consensus        80 ~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~  149 (279)
                      ..+++++++..|..       +.||.+++|++++|+|+||||||||+++|+|.+ .|++|.|+++|.++...   ....+
T Consensus      1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll-~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257      1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT-TVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred             ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECcchHHHHhhhE
Confidence            45889999888864       238999999999999999999999999999999 89999999999887421   11123


Q ss_pred             CCCccc--------HHHHHH---H--------HHH-HHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          150 SFKAED--------RVENIR---R--------IGE-VAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       150 ~~~~~~--------~~~~~~---~--------v~~-~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                      +|.++.        .++.+.   .        ..+ +..++...++..    .+..+|+|+++| .++++++.+|++  +
T Consensus      2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~V--L 2092 (2272)
T TIGR01257      2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPL--V 2092 (2272)
T ss_pred             EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence            332221        111111   0        011 112233334322    245688899888 899999999998  9


Q ss_pred             EEeCCccchhccChhhHHHH
Q 023675          205 FMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +||||+..++...++.+++.
T Consensus      2093 LLDEPTsGLDp~sr~~l~~l 2112 (2272)
T TIGR01257      2093 LLDEPTTGMDPQARRMLWNT 2112 (2272)
T ss_pred             EEECCCCCCCHHHHHHHHHH
Confidence            99999999999888775553

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.42  E-value=1.7e-12  Score=108.37  Aligned_cols=153  Identities=20%  Similarity=0.300  Sum_probs=96.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccHHHHHHHHHHHHHHHH---h
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFA---D  172 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~---~  172 (279)
                      +|++++|+|+|||||||+++.|++++. +    ++++|+++...     +...+.+..+.+..+...+...+..+.   .
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFS-A----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNE   76 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcC-C----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCC
Confidence            589999999999999999999999983 3    48999987432     122345555554455555544443331   2


Q ss_pred             CCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCC---CCccccCcCCCCC--CCc
Q 023675          173 AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK---GFTGIDDPYEPPL--NCE  247 (279)
Q Consensus       173 ~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~---~~~~~r~~~~~~~--~a~  247 (279)
                      .+.++   +.......|+.++....  +|..+||++|.+.+.+|+.++      .++..   .+..+...+++|.  +.+
T Consensus        77 ~g~iv---~s~~~~~~R~~~r~~~~--~~~~v~l~a~~~~l~~Rl~~R------~~~~~~~~vl~~Q~~~~e~~~~~e~~  145 (176)
T PRK09825         77 TGFIV---CSSLKKQYRDILRKSSP--NVHFLWLDGDYETILARMQRR------AGHFMPPDLLQSQFDALERPCADEHD  145 (176)
T ss_pred             CEEEE---EEecCHHHHHHHHhhCC--CEEEEEEeCCHHHHHHHHhcc------cCCCCCHHHHHHHHHHcCCCCCCcCC
Confidence            33322   33444566777766543  467799999999999998554      22221   1122233233332  122


Q ss_pred             -eEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          248 -IVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       248 -~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                       +++|+    ..++++.+.++...+..
T Consensus       146 ~~~~d~----~~~~~~~~~~~~~~~~~  168 (176)
T PRK09825        146 IARIDV----NHDIENVTEQCRQAVQA  168 (176)
T ss_pred             eEEEEC----CCCHHHHHHHHHHHHHH
Confidence             45554    56788899999888875

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.42  E-value=6.9e-13  Score=142.15  Aligned_cols=142  Identities=19%  Similarity=0.246  Sum_probs=99.6

Q ss_pred             CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec--cc--cc----
Q 023675           81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RH--GL----  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i--~~--~~----  145 (279)
                      .+++++++|+|..       +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.--  .+  .+    
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~-~~~~G~i~~~g~i~yv~Q~~~l~~~T  714 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHVHMKGSVAYVPQQAWIQNDS  714 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-ccCCcEEEECCEEEEEcCCccccCCc
Confidence            6999999999964       238999999999999999999999999999999 89999999998421  00  11    


Q ss_pred             -ccCCCCCcccHHHHHHHHHHHHHHHHh-----CCc----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675          146 -NRDLSFKAEDRVENIRRIGEVAKLFAD-----AGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (279)
Q Consensus       146 -~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~  214 (279)
                       ...+.+...-..+.+..+.+.+.+..+     .|.    ...+..+++|+++| .+||++..++++  ++||+|++.++
T Consensus       715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~i--llLDEp~saLD  792 (1522)
T TIGR00957       715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI--YLFDDPLSAVD  792 (1522)
T ss_pred             HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEcCCccccC
Confidence             111111110001222222222221111     121    22345689999999 999999999998  99999999999


Q ss_pred             ccChhhHHHHH
Q 023675          215 ARDPKGLYKLA  225 (279)
Q Consensus       215 ~R~~~~l~~~~  225 (279)
                      ....+.+++..
T Consensus       793 ~~~~~~i~~~l  803 (1522)
T TIGR00957       793 AHVGKHIFEHV  803 (1522)
T ss_pred             HHHHHHHHHHH
Confidence            98887776554

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.41  E-value=1e-12  Score=128.80  Aligned_cols=130  Identities=22%  Similarity=0.275  Sum_probs=88.2

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEE-----------EcCeeccccc------ccCCCCCcc-
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-----------LDGDNCRHGL------NRDLSFKAE-  154 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~-----------ldgd~i~~~~------~~~~~~~~~-  154 (279)
                      .+.+ .+.+|++++|+|+||||||||+++|+|.+ .|+.|.|.           ++|.++....      ...+.+..+ 
T Consensus        91 ~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l-~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~  168 (590)
T PRK13409         91 YGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL-IPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQY  168 (590)
T ss_pred             ecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccc
Confidence            3446 78999999999999999999999999999 89999997           8887763210      000111111 


Q ss_pred             ----------cHHHHHHH---HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675          155 ----------DRVENIRR---IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (279)
Q Consensus       155 ----------~~~~~~~~---v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R  216 (279)
                                ...+.+..   ...+..++...++..    .+..+|+++++| .++++++.+|++  ++||||++.|+..
T Consensus       169 ~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~l--llLDEPts~LD~~  246 (590)
T PRK13409        169 VDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADF--YFFDEPTSYLDIR  246 (590)
T ss_pred             hhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEECCCCCCCHH
Confidence                      00111110   011222333333322    344688999999 999999999998  9999999999998


Q ss_pred             ChhhHHHHHh
Q 023675          217 DPKGLYKLAR  226 (279)
Q Consensus       217 ~~~~l~~~~~  226 (279)
                      ....+++.++
T Consensus       247 ~~~~l~~~i~  256 (590)
T PRK13409        247 QRLNVARLIR  256 (590)
T ss_pred             HHHHHHHHHH
Confidence            8777665433

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.41  E-value=3.8e-13  Score=139.47  Aligned_cols=147  Identities=19%  Similarity=0.211  Sum_probs=104.5

Q ss_pred             cCCCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675           77 AKSTNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L  145 (279)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~  145 (279)
                      |..|.|+|+|++++|..+       .||.+++||.|+|||..|||||||+++|-|+. .|.+|.|.|||.|+.+.    +
T Consensus      1134 P~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~-e~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV-EPAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred             CCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc-CccCCeEEEcCeecccccHHHH
Confidence            456899999999999754       39999999999999999999999999999999 88999999999998531    1


Q ss_pred             ccCC----------------------CCCcccHHHHHHHH--HHHHHHHH---hCCcchhcccCChHHHHH-HHHHHhCC
Q 023675          146 NRDL----------------------SFKAEDRVENIRRI--GEVAKLFA---DAGVICIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       146 ~~~~----------------------~~~~~~~~~~~~~v--~~~~~~~~---~~~~~~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      +..+                      .+++++..+.++..  .....-+.   +..+...+...+.||+|. .++|++++
T Consensus      1213 RsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr 1292 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR 1292 (1381)
T ss_pred             HhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc
Confidence            1111                      12333333333221  11111110   112233455678888887 89999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +.++  +.|||.++.++..--.-+.+.++
T Consensus      1293 ~skI--LvLDEATAsVD~~TD~lIQ~tIR 1319 (1381)
T KOG0054|consen 1293 KSKI--LVLDEATASVDPETDALIQKTIR 1319 (1381)
T ss_pred             cCCE--EEEecccccCChHHHHHHHHHHH
Confidence            9988  99999999998876443434344

>PRK13948 shikimate kinase; Provisional

Probab=99.41  E-value=1e-13  Score=116.19  Aligned_cols=159  Identities=19%  Similarity=0.198  Sum_probs=95.9

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccccc---CCCCCcccHHHHHHHHHHHHHHHHh--CC
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR---DLSFKAEDRVENIRRIGEVAKLFAD--AG  174 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~--~~  174 (279)
                      +++..|+|+|++||||||+++.|+..+..+     ++|.|.+.+...+   ...|.......+++...++...+..  ..
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~-----~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~   82 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLH-----FIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYA   82 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCC-----EEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCe
Confidence            356899999999999999999999998655     8898866432210   0001111111222222222222222  22


Q ss_pred             cchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh---HHHH-HhCCCCCCCccccCcCCCCCCCceEE
Q 023675          175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG---LYKL-AREGKVKGFTGIDDPYEPPLNCEIVL  250 (279)
Q Consensus       175 ~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~---l~~~-~~~~~~~~~~~~r~~~~~~~~a~~~i  250 (279)
                      +++.+++......++..++.   .  ...|||+.|.+.+.+|+...   ++.. ....++..++..|.++|..  ++++|
T Consensus        83 VIa~GgG~v~~~~n~~~l~~---~--g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~--a~~~i  155 (182)
T PRK13948         83 VISLGGGTFMHEENRRKLLS---R--GPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQ--ATIHV  155 (182)
T ss_pred             EEECCCcEEcCHHHHHHHHc---C--CeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHh--CCEEE
Confidence            33333333344455554443   2  23489999999999987422   1110 0011233455667888854  88999


Q ss_pred             EccCCCCCCHHHHHHHHHHHHHh
Q 023675          251 KQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       251 ~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      ++   +..++++++++|+..|..
T Consensus       156 ~t---~~~~~~ei~~~i~~~l~~  175 (182)
T PRK13948        156 ST---DGRRSEEVVEEIVEKLWA  175 (182)
T ss_pred             EC---CCCCHHHHHHHHHHHHHH
Confidence            99   889999999999998876

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.40  E-value=2.9e-12  Score=105.28  Aligned_cols=150  Identities=19%  Similarity=0.281  Sum_probs=90.2

Q ss_pred             EEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhc
Q 023675          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA  179 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~  179 (279)
                      ++|+|++||||||+++.|++.+.     .+++++|++...     ......+..+....++..+.+.+..+...+..+++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~-----~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi   75 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG-----AKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGII   75 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC-----CeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            47899999999999999999983     558999997422     11223444455555655555544444444443455


Q ss_pred             ccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCC---CCccccCcCCCCC--CCc-eEEEcc
Q 023675          180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK---GFTGIDDPYEPPL--NCE-IVLKQM  253 (279)
Q Consensus       180 ~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~---~~~~~r~~~~~~~--~a~-~~i~~~  253 (279)
                      .........|+.++..  .+.+..++++.|.+.+.+|+..+      .++..   .+......++.|.  +++ .+||  
T Consensus        76 ~~t~~~~~~r~~~~~~--~~~~~~i~l~~~~e~~~~R~~~R------~~~~~~~~~i~~~~~~~~~~~~~e~~~~~id--  145 (163)
T TIGR01313        76 TCSALKRHYRDILREA--EPNLHFIYLSGDKDVILERMKAR------KGHFMKADMLESQFAALEEPLADETDVLRVD--  145 (163)
T ss_pred             EecccHHHHHHHHHhc--CCCEEEEEEeCCHHHHHHHHHhc------cCCCCCHHHHHHHHHHhCCCCCCCCceEEEE--
Confidence            5555555666666532  34566699999999999998543      22111   1111111122221  123 4454  


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 023675          254 GDDCPSPADMVETVVSYL  271 (279)
Q Consensus       254 ~~~~~~~~e~~~~Il~~l  271 (279)
                        +..+++++.++|.+.|
T Consensus       146 --~~~~~~~~~~~~~~~~  161 (163)
T TIGR01313       146 --IDQPLEGVEEDCIAVV  161 (163)
T ss_pred             --CCCCHHHHHHHHHHHH
Confidence              4567889999988776

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.40  E-value=1.1e-12  Score=106.91  Aligned_cols=134  Identities=19%  Similarity=0.196  Sum_probs=84.9

Q ss_pred             ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec-ccccccCCCCCcccHHHHHHHHHH----
Q 023675           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC-RHGLNRDLSFKAEDRVENIRRIGE----  165 (279)
Q Consensus        91 ~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i-~~~~~~~~~~~~~~~~~~~~~v~~----  165 (279)
                      ..++.||+++.||.++|-|+|||||||+++.|-+-| .|++|.|++.-..- -+....+..-..+-++..+.++.|    
T Consensus        26 V~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv  104 (235)
T COG4778          26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-LPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV  104 (235)
T ss_pred             eeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-CCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence            345679999999999999999999999999999999 99999999874321 110000000000001111111111    


Q ss_pred             ---------------------------HHHHHHhCCcch-----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675          166 ---------------------------VAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (279)
Q Consensus       166 ---------------------------~~~~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~  212 (279)
                                                 ...++....+-.     -.+..+++++|| .++|..+-+.++  ++||||++.
T Consensus       105 iPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pI--LLLDEPTas  182 (235)
T COG4778         105 IPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPI--LLLDEPTAS  182 (235)
T ss_pred             ccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCce--EEecCCccc
Confidence                                       111222211111     122356778888 999999998777  999999999


Q ss_pred             hhccChhhHHHHHhC
Q 023675          213 CEARDPKGLYKLARE  227 (279)
Q Consensus       213 l~~R~~~~l~~~~~~  227 (279)
                      ++....+-..+.+.+
T Consensus       183 LDa~Nr~vVveli~e  197 (235)
T COG4778         183 LDATNRAVVVELIRE  197 (235)
T ss_pred             ccccchHHHHHHHHH
Confidence            999887765544443

>PLN03073 ABC transporter F family; Provisional

Probab=99.40  E-value=3.2e-12  Score=127.66  Aligned_cols=147  Identities=15%  Similarity=0.137  Sum_probs=95.7

Q ss_pred             CCCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcc--ccCCccEEEEcCeecc-ccc-----
Q 023675           79 STNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCR-HGL-----  145 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l--~~~~~G~i~ldgd~i~-~~~-----  145 (279)
                      ...|++++++++|..+     .||++.+|+.++|+|+||||||||+++|++..  ..|..|.|.+....+. ...     
T Consensus       175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~  254 (718)
T PLN03073        175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC  254 (718)
T ss_pred             ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence            3569999999999643     39999999999999999999999999999864  2567888865433221 000     


Q ss_pred             ------------ccCCCCCcc---------------------cHHHHHHHHHHHH----------------HHHHhCCcc
Q 023675          146 ------------NRDLSFKAE---------------------DRVENIRRIGEVA----------------KLFADAGVI  176 (279)
Q Consensus       146 ------------~~~~~~~~~---------------------~~~~~~~~v~~~~----------------~~~~~~~~~  176 (279)
                                  ....++..+                     .......++.++.                .++...|+.
T Consensus       255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~  334 (718)
T PLN03073        255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT  334 (718)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence                        000000000                     0000011111111                112222321


Q ss_pred             -----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675          177 -----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       177 -----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                           .....+|+++++| .++++++.+|++  ++||||+..|+......+.+.++.
T Consensus       335 ~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~l--LlLDEPt~~LD~~~~~~l~~~L~~  389 (718)
T PLN03073        335 PEMQVKATKTFSGGWRMRIALARALFIEPDL--LLLDEPTNHLDLHAVLWLETYLLK  389 (718)
T ss_pred             hHHHhCchhhCCHHHHHHHHHHHHHhcCCCE--EEEECCCCCCCHHHHHHHHHHHHH
Confidence                 1234688899998 999999999998  999999999999887777665553

>PRK06762 hypothetical protein; Provisional

Probab=99.39  E-value=4.5e-13  Score=110.44  Aligned_cols=159  Identities=18%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACL  181 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~  181 (279)
                      +.+++|+|++||||||+++.|+..+ .  .+.+++++|.+++.+.........   .....+.+........+..++.+.
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l-~--~~~~~i~~D~~r~~l~~~~~~~~~---~~~~~~~~~~~~~~~~g~~vild~   75 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL-G--RGTLLVSQDVVRRDMLRVKDGPGN---LSIDLIEQLVRYGLGHCEFVILEG   75 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh-C--CCeEEecHHHHHHHhccccCCCCC---cCHHHHHHHHHHHHhCCCEEEEch
Confidence            5789999999999999999999988 2  267788999887544321111110   111122223333334565555554


Q ss_pred             CChHHHHHHHHHHhCCC--CCccEEEEeCCccchhccChhhHHHH-HhCCCCCCCccccCcCCCCCCCceEEEccCCCCC
Q 023675          182 ISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKL-AREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCP  258 (279)
Q Consensus       182 ~~~~~~~r~~ar~l~~~--~~~i~i~ld~p~~~l~~R~~~~l~~~-~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~  258 (279)
                      .......++..+.+...  .++..++++.|.+.+.+|..++-... .....+..++..+..++.   ++.++++   ++.
T Consensus        76 ~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~---~~~  149 (166)
T PRK06762         76 ILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDTLGV---IGETIFT---DNL  149 (166)
T ss_pred             hhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCCcCC---CCeEEec---CCC
Confidence            43333334444444332  24667999999999999986542100 011112222333333332   4568888   789


Q ss_pred             CHHHHHHHHHHHHH
Q 023675          259 SPADMVETVVSYLD  272 (279)
Q Consensus       259 ~~~e~~~~Il~~l~  272 (279)
                      ++++++++|+..+.
T Consensus       150 ~~~~v~~~i~~~~~  163 (166)
T PRK06762        150 SLKDIFDAILTDIG  163 (166)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998875

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.39  E-value=3.6e-12  Score=103.14  Aligned_cols=142  Identities=16%  Similarity=0.181  Sum_probs=91.8

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----------ccc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----------GLN  146 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----------~~~  146 (279)
                      |.+++..+.|..     +.+|..+.|++++|.||||+|||||++.|.-+- -|.+|+..+.+....-          .++
T Consensus         3 irv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle-~p~sg~l~ia~~~fd~s~~~~~k~i~~lr   81 (242)
T COG4161           3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE-MPRSGTLNIAGNHFDFSKTPSDKAIRDLR   81 (242)
T ss_pred             eEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHh-CCCCCeEEecccccccccCccHHHHHHHH
Confidence            455566666664     348889999999999999999999999887655 8999999998865421          112


Q ss_pred             cCCCCCcccHH--HHHHH-------------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675          147 RDLSFKAEDRV--ENIRR-------------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       147 ~~~~~~~~~~~--~~~~~-------------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      .+.++.++...  ..+..                   ..+...++....+..    ..-.+++++++| +++|+++-+|+
T Consensus        82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq  161 (242)
T COG4161          82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ  161 (242)
T ss_pred             HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence            22333222110  00000                   011111111111111    122467888888 99999999998


Q ss_pred             ccEEEEeCCccchhccChhhHHHHHh
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +  +++|+|+..+++.+...+...++
T Consensus       162 v--llfdeptaaldpeitaqvv~iik  185 (242)
T COG4161         162 V--LLFDEPTAALDPEITAQIVSIIK  185 (242)
T ss_pred             E--EeecCcccccCHHHHHHHHHHHH
Confidence            8  99999999999988776554443

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.38  E-value=1.6e-12  Score=128.36  Aligned_cols=130  Identities=18%  Similarity=0.234  Sum_probs=88.2

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC---ccEEEEcCeeccc-ccccCCCCCccc--------HHHHH
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRH-GLNRDLSFKAED--------RVENI  160 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~---~G~i~ldgd~i~~-~~~~~~~~~~~~--------~~~~~  160 (279)
                      ++.|+.+++|++++|+|+||||||||+++|+|.. .++   +|.|.++|.++.. .....++|.+++        .++.+
T Consensus        42 ~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~-~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l  120 (617)
T TIGR00955        42 KNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS-PKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHL  120 (617)
T ss_pred             cCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHH
Confidence            4558999999999999999999999999999998 554   7999999987631 111111221111        01100


Q ss_pred             ---------------HHHHHHHHHHHhCCcc-----hhc-----ccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675          161 ---------------RRIGEVAKLFADAGVI-----CIA-----CLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (279)
Q Consensus       161 ---------------~~v~~~~~~~~~~~~~-----~i~-----~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~  214 (279)
                                     .....+..++...++.     .++     ..+++++++| .++++++.+|++  +++|||+..++
T Consensus       121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v--lllDEPtsgLD  198 (617)
T TIGR00955       121 MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL--LFCDEPTSGLD  198 (617)
T ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE--EEeeCCCcchh
Confidence                           0111122233332321     122     2588899988 999999999988  99999999999


Q ss_pred             ccChhhHHHHH
Q 023675          215 ARDPKGLYKLA  225 (279)
Q Consensus       215 ~R~~~~l~~~~  225 (279)
                      ......+.+.+
T Consensus       199 ~~~~~~l~~~L  209 (617)
T TIGR00955       199 SFMAYSVVQVL  209 (617)
T ss_pred             HHHHHHHHHHH
Confidence            99887755443

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.36  E-value=3.4e-13  Score=112.04  Aligned_cols=146  Identities=16%  Similarity=0.184  Sum_probs=95.5

Q ss_pred             CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC-eeccccc-----ccCCCCCc
Q 023675           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGL-----NRDLSFKA  153 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg-d~i~~~~-----~~~~~~~~  153 (279)
                      .++++.+..|.+.+..||++.+|+.-+|+||||+||||++..|.|.- .|+.|+++++| .++...-     ...++-.+
T Consensus         9 ~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt-rp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKF   87 (249)
T COG4674           9 DGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT-RPQEGEVLFDGDTDLTKLPEHRIARAGIGRKF   87 (249)
T ss_pred             eceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC-CCCcceEEEcCchhhccCCHHHHHHhccCccc
Confidence            35666667778888889999999999999999999999999999999 89999999999 5664211     01111111


Q ss_pred             c--------cHHHHHH--------------------HHHHHHHHHHhCCc----chhcccCChHHHHH-HHHHHhCCCCC
Q 023675          154 E--------DRVENIR--------------------RIGEVAKLFADAGV----ICIACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       154 ~--------~~~~~~~--------------------~v~~~~~~~~~~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      +        ..++++.                    .-.++-.++.-.++    ....+.++.+++|+ ++..-++.+|+
T Consensus        88 Q~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~  167 (249)
T COG4674          88 QKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPK  167 (249)
T ss_pred             cCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCc
Confidence            1        0000000                    00011112222222    12345678888888 88888889998


Q ss_pred             ccEEEEeCCccchhccChhh---HHHHHhCC
Q 023675          201 FIEVFMDVPLQVCEARDPKG---LYKLAREG  228 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~---l~~~~~~~  228 (279)
                      +  +++|||.+...+.....   |+..+...
T Consensus       168 l--LLlDEPvAGMTd~Et~~taeLl~~la~~  196 (249)
T COG4674         168 L--LLLDEPVAGMTDAETEKTAELLKSLAGK  196 (249)
T ss_pred             E--EEecCccCCCcHHHHHHHHHHHHHHhcC
Confidence            8  99999998877655433   44444433

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.36  E-value=1.8e-12  Score=138.65  Aligned_cols=129  Identities=16%  Similarity=0.171  Sum_probs=87.9

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc----cccc-----cCCCCCcccHHHHHHHH
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----HGLN-----RDLSFKAEDRVENIRRI  163 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~----~~~~-----~~~~~~~~~~~~~~~~v  163 (279)
                      .+.+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.--.    .++.     ..+.+...-....+..+
T Consensus       443 ~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~-~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~  521 (1490)
T TIGR01271       443 KNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL-EPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSV  521 (1490)
T ss_pred             eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHH
Confidence            3558999999999999999999999999999999 899999999984210    0110     01111110001112222


Q ss_pred             HHHHHHHHh-----CCc----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          164 GEVAKLFAD-----AGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       164 ~~~~~~~~~-----~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ...+.+..+     .+.    ...+..+++|+++| .++|+++.++++  ++||+|++.++....+.+++.
T Consensus       522 ~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~i--llLDep~saLD~~~~~~i~~~  590 (1490)
T TIGR01271       522 IKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFTHLDVVTEKEIFES  590 (1490)
T ss_pred             HHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence            222211111     111    12345689999999 999999999998  999999999999988877753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.34  E-value=4e-13  Score=111.75  Aligned_cols=158  Identities=18%  Similarity=0.278  Sum_probs=88.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccccc-CCC--CCcccHHHHHHHHHHHHHHHHhCCcchh
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-DLS--FKAEDRVENIRRIGEVAKLFADAGVICI  178 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~i  178 (279)
                      ...|+|+|++||||||+++.|++.+..+     ++|.|........ .+.  +.......++..-.+....+...+..++
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~-----~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi   78 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNME-----FYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVL   78 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCc-----EEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEE
Confidence            4579999999999999999999988544     7888764322111 111  1111111111111111111222222222


Q ss_pred             c--ccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh----HHHH-HhCCCCCCCccccCcCCCCCCCceEEE
Q 023675          179 A--CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG----LYKL-AREGKVKGFTGIDDPYEPPLNCEIVLK  251 (279)
Q Consensus       179 ~--~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~----l~~~-~~~~~~~~~~~~r~~~~~~~~a~~~i~  251 (279)
                      .  .+.......+...+    ...+ .|||+.|.+.+.+|...+    ++.. .....+..+...|.++|... ++++|+
T Consensus        79 ~~ggg~v~~~~~~~~l~----~~~~-vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~~-Ad~~id  152 (172)
T PRK05057         79 ATGGGSVKSRETRNRLS----ARGV-VVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEEI-ADVTIR  152 (172)
T ss_pred             EcCCchhCCHHHHHHHH----hCCE-EEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh-CCEEEE
Confidence            2  11112223333333    2233 499999999999987432    1100 00001223445577777653 789999


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHh
Q 023675          252 QMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       252 ~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      +   +..+++++++.|++.+++
T Consensus       153 t---~~~s~~ei~~~i~~~l~~  171 (172)
T PRK05057        153 T---DDQSAKVVANQIIHMLES  171 (172)
T ss_pred             C---CCCCHHHHHHHHHHHHhh
Confidence            9   889999999999998875

>PLN03140 ABC transporter G family member; Provisional

Probab=99.34  E-value=4.3e-12  Score=134.93  Aligned_cols=141  Identities=16%  Similarity=0.149  Sum_probs=94.1

Q ss_pred             CeEEeecceeec------------------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEEEcCee
Q 023675           81 NILWHKNSVDKR------------------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDN  140 (279)
Q Consensus        81 ~i~~~~~~~~~~------------------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ldgd~  140 (279)
                      .+.|+|+++...                  ++.|+.+++|++++|+|+||||||||+++|+|+. .  +.+|.|.++|.+
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~-~~g~~~G~I~inG~~  945 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYIEGDIRISGFP  945 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCC-CCCcccceEEECCcc
Confidence            589999876652                  1238999999999999999999999999999987 4  358999999976


Q ss_pred             cccc-cccCCCCCccc--------HHHHHH---------------HHHHHHHHHHhCCcch----h-----cccCChHHH
Q 023675          141 CRHG-LNRDLSFKAED--------RVENIR---------------RIGEVAKLFADAGVIC----I-----ACLISPYRK  187 (279)
Q Consensus       141 i~~~-~~~~~~~~~~~--------~~~~~~---------------~v~~~~~~~~~~~~~~----i-----~~~~~~~~~  187 (279)
                      .... .....+|.+++        .++.+.               ....+..++...++..    .     ...++++++
T Consensus       946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140        946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred             CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence            5321 11111211111        011110               0001111222222211    1     146889999


Q ss_pred             HH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          188 DR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       188 ~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +| .++++++.+|++  ++||||+..|+.+....+.+.
T Consensus      1026 kRvsIa~aL~~~P~l--L~LDEPTsgLD~~~a~~v~~~ 1061 (1470)
T PLN03140       1026 KRLTIAVELVANPSI--IFMDEPTSGLDARAAAIVMRT 1061 (1470)
T ss_pred             HHHHHHHHHhhCCCE--EEEeCCCCCCCHHHHHHHHHH
Confidence            99 999999999998  999999999999887765443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.32  E-value=6.4e-12  Score=120.93  Aligned_cols=143  Identities=18%  Similarity=0.145  Sum_probs=93.8

Q ss_pred             CCCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccccc-CC-C
Q 023675           79 STNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-DL-S  150 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~-~~-~  150 (279)
                      ..-+++++++++|.++      .||.+++|+.|+|+||||+|||||+++|++.+ .|.+|.|.+... +.-+... .. .
T Consensus       319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~-~~~~G~v~~g~~-v~igyf~Q~~~~  396 (530)
T COG0488         319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL-GPLSGTVKVGET-VKIGYFDQHRDE  396 (530)
T ss_pred             CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc-ccCCceEEeCCc-eEEEEEEehhhh
Confidence            3458999999999654      39999999999999999999999999999999 777898876543 2211000 00 0


Q ss_pred             C-CcccHHHHHHHH------HHHHHHHHhCCc-----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675          151 F-KAEDRVENIRRI------GEVAKLFADAGV-----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (279)
Q Consensus       151 ~-~~~~~~~~~~~v------~~~~~~~~~~~~-----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~  217 (279)
                      + .......++...      ..+-..+..+++     ...+..+|+|++.| .+++-++..|.+  ++||||+++|+--.
T Consensus       397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNv--LiLDEPTNhLDi~s  474 (530)
T COG0488         397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL--LLLDEPTNHLDIES  474 (530)
T ss_pred             cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCE--EEEcCCCccCCHHH
Confidence            0 111111111110      112222223332     22455689999999 777888888888  99999999997765


Q ss_pred             hhhHHHHH
Q 023675          218 PKGLYKLA  225 (279)
Q Consensus       218 ~~~l~~~~  225 (279)
                      ...|-..+
T Consensus       475 ~~aLe~aL  482 (530)
T COG0488         475 LEALEEAL  482 (530)
T ss_pred             HHHHHHHH
Confidence            44444333

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.32  E-value=4.4e-12  Score=115.87  Aligned_cols=116  Identities=18%  Similarity=0.181  Sum_probs=77.8

Q ss_pred             EEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc--------cHHHHHHH------------HH
Q 023675          107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE--------DRVENIRR------------IG  164 (279)
Q Consensus       107 lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~--------~~~~~~~~------------v~  164 (279)
                      |+|+||||||||+++|+|++ .|.+|.|+++|.++...  ....++|.++        ...+.+..            ..
T Consensus         1 l~G~nGsGKSTLl~~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~   79 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP   79 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence            58999999999999999999 89999999999887321  0111121111        11111110            01


Q ss_pred             HHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          165 EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       165 ~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .+...+...++..    ....+|+++++| .++++++.+|++  ++||||+..++......+++.+
T Consensus        80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~l--llLDEP~s~LD~~~~~~l~~~l  143 (325)
T TIGR01187        80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI--LLLDEPLSALDKKLRDQMQLEL  143 (325)
T ss_pred             HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCccCCHHHHHHHHHHH
Confidence            1122233333322    344588999999 999999999998  9999999999998877655443

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.31  E-value=6.6e-12  Score=114.53  Aligned_cols=140  Identities=17%  Similarity=0.195  Sum_probs=94.2

Q ss_pred             eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC----CccEEEEcCeecccc----
Q 023675           82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHG----  144 (279)
Q Consensus        82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~----~~G~i~ldgd~i~~~----  144 (279)
                      ++++|+++.|.         .+.||.+.+||+++|||.||||||-.++.++++|+.+    .+|.|.++|.++-..    
T Consensus         7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~   86 (534)
T COG4172           7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ   86 (534)
T ss_pred             eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence            45555555443         4559999999999999999999999999999999643    368999999987321    


Q ss_pred             ---cc-cCCCCCcccH--------------HHHHH---------HHHHHHHHHHhCCc-------chhcccCChHHHHH-
Q 023675          145 ---LN-RDLSFKAEDR--------------VENIR---------RIGEVAKLFADAGV-------ICIACLISPYRKDR-  189 (279)
Q Consensus       145 ---~~-~~~~~~~~~~--------------~~~~~---------~v~~~~~~~~~~~~-------~~i~~~~~~~~~~r-  189 (279)
                         ++ ..+++.+++.              .+.++         .-.....++..-|+       ..+...+|+++++| 
T Consensus        87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRV  166 (534)
T COG4172          87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRV  166 (534)
T ss_pred             HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHH
Confidence               11 1222222211              00000         00112223333333       23555689999999 


Q ss_pred             HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       190 ~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      -++.+++.+|++  ++-|||+..++--.+..+++
T Consensus       167 MIAMALan~P~l--LIADEPTTALDVtvQaQIL~  198 (534)
T COG4172         167 MIAMALANEPDL--LIADEPTTALDVTVQAQILD  198 (534)
T ss_pred             HHHHHHcCCCCe--EeecCCcchhhhhhHHHHHH
Confidence            889999999998  99999999998877766444

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.30  E-value=1.4e-11  Score=121.20  Aligned_cols=136  Identities=20%  Similarity=0.272  Sum_probs=91.7

Q ss_pred             CCeEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEEEcCeeccc-ccc
Q 023675           80 TNILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRH-GLN  146 (279)
Q Consensus        80 ~~i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ldgd~i~~-~~~  146 (279)
                      ..+.|++..++...          +.+...++|++.||+||||||||||+++|+++...  ..+|.|.+||..... ...
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~  103 (613)
T KOG0061|consen   24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR  103 (613)
T ss_pred             ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence            34667776555533          34889999999999999999999999999999853  468999999954421 111


Q ss_pred             cCCCCCcc--------------------------cHHHHHHHHHHHHHHHHhCCcch-----hc----ccCChHHHHH-H
Q 023675          147 RDLSFKAE--------------------------DRVENIRRIGEVAKLFADAGVIC-----IA----CLISPYRKDR-D  190 (279)
Q Consensus       147 ~~~~~~~~--------------------------~~~~~~~~v~~~~~~~~~~~~~~-----i~----~~~~~~~~~r-~  190 (279)
                      .-.+|..+                          ...+...++.++.   .+.++..     ++    .+.+++++.| .
T Consensus       104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi---~~LgL~~~~~t~ig~~~~rgiSGGErkRvs  180 (613)
T KOG0061|consen  104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVI---SELGLEKCADTLIGNPGIRGLSGGERKRVS  180 (613)
T ss_pred             heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---HHcCChhhccceecCCCCCccccchhhHHH
Confidence            11111111                          1112222333222   2223221     11    3578889888 9


Q ss_pred             HHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675          191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       191 ~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      ++.+++.+|.+  +++|||+..|+......
T Consensus       181 ia~Ell~~P~i--LflDEPTSGLDS~sA~~  208 (613)
T KOG0061|consen  181 IALELLTDPSI--LFLDEPTSGLDSFSALQ  208 (613)
T ss_pred             HHHHHHcCCCE--EEecCCCCCcchhhHHH
Confidence            99999999987  99999999999998755

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.28  E-value=3.4e-11  Score=116.06  Aligned_cols=144  Identities=24%  Similarity=0.323  Sum_probs=98.7

Q ss_pred             CCCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-c-----ccc--
Q 023675           79 STNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-C-----RHG--  144 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i-----~~~--  144 (279)
                      ...|+++|+++.-+++.      ++.+++|+.+.|.|+||||||||+++|+|+. +-++|.|-.-.+. +     +.-  
T Consensus       390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW-P~g~G~I~~P~~~~~lflpQ~PY~p  468 (604)
T COG4178         390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW-PWGSGRISMPADSALLFLPQRPYLP  468 (604)
T ss_pred             cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC-ccCCCceecCCCCceEEecCCCCCC
Confidence            46789999988887643      8999999999999999999999999999998 6667877665332 1     000  


Q ss_pred             ---cccCC-------CCCcccHHHHHHHH--HHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675          145 ---LNRDL-------SFKAEDRVENIRRI--GEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (279)
Q Consensus       145 ---~~~~~-------~~~~~~~~~~~~~v--~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~  211 (279)
                         ++..+       .+++++..+.+..+  .+.+..+.+  ...=-.-++++++|| +.||-++.+|++  ++|||.++
T Consensus       469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~--~~~W~~vLS~GEqQRlafARilL~kP~~--v~LDEATs  544 (604)
T COG4178         469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE--EDRWDRVLSGGEQQRLAFARLLLHKPKW--VFLDEATS  544 (604)
T ss_pred             CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc--cCcHhhhcChhHHHHHHHHHHHHcCCCE--EEEecchh
Confidence               00000       13333332222221  111111111  111122378899999 999999999999  99999999


Q ss_pred             chhccChhhHHHHHhC
Q 023675          212 VCEARDPKGLYKLARE  227 (279)
Q Consensus       212 ~l~~R~~~~l~~~~~~  227 (279)
                      .+++-....+++.+++
T Consensus       545 ALDe~~e~~l~q~l~~  560 (604)
T COG4178         545 ALDEETEDRLYQLLKE  560 (604)
T ss_pred             ccChHHHHHHHHHHHh
Confidence            9999999888887664

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.27  E-value=1.4e-11  Score=102.27  Aligned_cols=159  Identities=20%  Similarity=0.196  Sum_probs=94.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc-----cCCCCCc--------ccHHHHHHHHHHHHH
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----RDLSFKA--------EDRVENIRRIGEVAK  168 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~-----~~~~~~~--------~~~~~~~~~v~~~~~  168 (279)
                      |++|.|-|+|-|||||++++|...+..|   -+.+..|.+...+.     ...++.+        ......+.-......
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p---~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ia   77 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEP---WLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIA   77 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS----EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCC---eEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHH
Confidence            6899999999999999999999998544   56677776654322     1223322        122333444445555


Q ss_pred             HHHhCCcchhcccCChHHH-HHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCcccc-CcCCCCCCC
Q 023675          169 LFADAGVICIACLISPYRK-DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID-DPYEPPLNC  246 (279)
Q Consensus       169 ~~~~~~~~~i~~~~~~~~~-~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r-~~~~~~~~a  246 (279)
                      .+.+.|+.++++....+.. ..+.++.++...++..|-+.||.+.+.+|..      .+..+...+.... ...+....-
T Consensus        78 a~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~------~RgDR~~G~a~~q~~~Vh~~~~Y  151 (174)
T PF07931_consen   78 AMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRER------ARGDRPIGLAAWQAEHVHEGGRY  151 (174)
T ss_dssp             HHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHH------HHTSSSTTHHHHHTTGGGTT---
T ss_pred             HHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHH------hcCCcchHHHHHHHhhcccCCCC
Confidence            6678898888775433333 3566767777667777899999999999984      3333333322111 112233346


Q ss_pred             ceEEEccCCCCCCHHHHHHHHHHHHH
Q 023675          247 EIVLKQMGDDCPSPADMVETVVSYLD  272 (279)
Q Consensus       247 ~~~i~~~~~~~~~~~e~~~~Il~~l~  272 (279)
                      |+.|||   +..+|++++++|++.|+
T Consensus       152 DleVDT---s~~sp~ecA~~I~~~~~  174 (174)
T PF07931_consen  152 DLEVDT---SATSPEECAREILARLE  174 (174)
T ss_dssp             SEEEET---TSS-HHHHHHHHHTT--
T ss_pred             CEEEEC---CCCCHHHHHHHHHHHhC
Confidence            799999   99999999999998764

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.26  E-value=2.3e-12  Score=125.12  Aligned_cols=163  Identities=15%  Similarity=0.213  Sum_probs=102.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc---ccccCCCCCcccHHHHHHHHHHHHH-HHHh-CCcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRVENIRRIGEVAK-LFAD-AGVI  176 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~---~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~-~~~~  176 (279)
                      -..++|+|++||||||+++.|+..|+.+     ++|.|..-.   +++...-|.......+++.-.++.. ++.. ..++
T Consensus         6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~-----fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VI   80 (542)
T PRK14021          6 RPQAVIIGMMGAGKTRVGKEVAQMMRLP-----FADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIF   80 (542)
T ss_pred             CccEEEECCCCCCHHHHHHHHHHHhCCC-----EEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence            3578999999999999999999999777     899887521   1111111222222222222222222 2222 2334


Q ss_pred             hhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh----HHHHHhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675          177 CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG----LYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQ  252 (279)
Q Consensus       177 ~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~----l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~  252 (279)
                      +.+++....++++..+.+.+++..+ .|||+.|++.+.+|+...    ++......++..++..|.++|... ++++|++
T Consensus        81 s~GGG~v~~~~n~~~L~~~~~~~g~-vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~~-Ad~~i~~  158 (542)
T PRK14021         81 SLGGGAPMTPSTQHALASYIAHGGR-VVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFRQV-ANVHVHT  158 (542)
T ss_pred             ECCCchhCCHHHHHHHHHHHhcCCE-EEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhh-CCEEEEC
Confidence            4444444455666666555554333 499999999999986421    221111123445666788888653 7899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHhC
Q 023675          253 MGDDCPSPADMVETVVSYLDEN  274 (279)
Q Consensus       253 ~~~~~~~~~e~~~~Il~~l~~~  274 (279)
                         +..++++++++|++.++..
T Consensus       159 ---~~~~~~~~~~~i~~~~~~~  177 (542)
T PRK14021        159 ---RGLTPQAAAKKLIDMVAER  177 (542)
T ss_pred             ---CCCCHHHHHHHHHHHHHhc
Confidence               8899999999999988763

>PRK13949 shikimate kinase; Provisional

Probab=99.25  E-value=2.3e-12  Score=106.90  Aligned_cols=153  Identities=18%  Similarity=0.189  Sum_probs=85.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccC--CCCCcccHHHHHHHHHHHHHHHHhCC--cchh
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRD--LSFKAEDRVENIRRIGEVAKLFADAG--VICI  178 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~i  178 (279)
                      .|+|+|++||||||+++.|++.+..+     ++|.|.+-.. ....  ..+.......+.+...++...+....  ++..
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~-----~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~   77 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLS-----FIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVIST   77 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCC-----eecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence            58999999999999999999998655     7887765211 1000  00111111112222222222222222  2223


Q ss_pred             cccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh-----HHHHHhCC----CCCCCccccCcCCCCCCCceE
Q 023675          179 ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG-----LYKLAREG----KVKGFTGIDDPYEPPLNCEIV  249 (279)
Q Consensus       179 ~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~-----l~~~~~~~----~~~~~~~~r~~~~~~~~a~~~  249 (279)
                      +++......+++..++    .++ .||||.|++.+.+|+...     +.......    .+..++..|.++|..  ++++
T Consensus        78 Ggg~~~~~~~~~~l~~----~~~-vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~--ad~~  150 (169)
T PRK13949         78 GGGAPCFFDNMELMNA----SGT-TVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQ--AKII  150 (169)
T ss_pred             CCcccCCHHHHHHHHh----CCe-EEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHh--CCEE
Confidence            3333333334443332    234 389999999999987421     11000000    112234557777766  6799


Q ss_pred             EEccCCCCCCHHHHHHHHHHHH
Q 023675          250 LKQMGDDCPSPADMVETVVSYL  271 (279)
Q Consensus       250 i~~~~~~~~~~~e~~~~Il~~l  271 (279)
                      |++   ++.+++++++.|++.|
T Consensus       151 id~---~~~~~~e~~~~I~~~~  169 (169)
T PRK13949        151 FNA---DKLEDESQIEQLVQRL  169 (169)
T ss_pred             EEC---CCCCHHHHHHHHHHhC
Confidence            999   8889999999998764

>PLN02199 shikimate kinase

Probab=99.23  E-value=3.6e-12  Score=113.28  Aligned_cols=157  Identities=15%  Similarity=0.155  Sum_probs=94.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-cc---CCCCCcccHHHHHHHHHHHHHHHHh-CC-
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-NR---DLSFKAEDRVENIRRIGEVAKLFAD-AG-  174 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-~~---~~~~~~~~~~~~~~~v~~~~~~~~~-~~-  174 (279)
                      +|..|+|+|++||||||+++.|+..+..+     ++|.|.+-+.. .+   ...|.......++....++...+.. .+ 
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~-----fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~  175 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYT-----FFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQV  175 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCE
Confidence            48899999999999999999999988666     89998763221 10   0011111111222222222222222 12 


Q ss_pred             cchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChh------hHHHHHh-------CCCCCCCccccCcCC
Q 023675          175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK------GLYKLAR-------EGKVKGFTGIDDPYE  241 (279)
Q Consensus       175 ~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~------~l~~~~~-------~~~~~~~~~~r~~~~  241 (279)
                      ++..+++......+    +.++.. . +.|||+.|++.+.+|+..      +++....       ...+..++..|.++|
T Consensus       176 VIStGGG~V~~~~n----~~~L~~-G-~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY  249 (303)
T PLN02199        176 VVSTGGGAVIRPIN----WKYMHK-G-ISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAY  249 (303)
T ss_pred             EEECCCcccCCHHH----HHHHhC-C-eEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHH
Confidence            22233322222333    334443 3 349999999999999863      1221000       023445666789999


Q ss_pred             CCCCCceEEE------------ccCCCCCCHHHHHHHHHHHHHh
Q 023675          242 PPLNCEIVLK------------QMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       242 ~~~~a~~~i~------------~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      ..  ++++|+            +   +..++++++.+|++.++.
T Consensus       250 ~~--Ad~~V~~~~~~~~~~~~~t---d~~s~~ei~~eIl~~l~~  288 (303)
T PLN02199        250 TN--ANARVSLENIAAKRGYKNV---SDLTPTEIAIEAFEQVLS  288 (303)
T ss_pred             Hh--CCEEEeccccccccccccc---CCCCHHHHHHHHHHHHHH
Confidence            87  889998            6   788999999999888764

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.23  E-value=3.7e-11  Score=124.89  Aligned_cols=150  Identities=19%  Similarity=0.239  Sum_probs=111.1

Q ss_pred             CCCeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc----cc--
Q 023675           79 STNILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----HG--  144 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~----~~--  144 (279)
                      ...+++++.+++...        +.||++++|+.+++||+-|||||+|+.+|.|.+ ...+|.+.++|.--.    .+  
T Consensus       516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm-~~~sG~v~v~gsiaYv~Q~pWI~  594 (1381)
T KOG0054|consen  516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEM-PKLSGSVAVNGSVAYVPQQPWIQ  594 (1381)
T ss_pred             CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCc-ccccceEEEcCeEEEeccccHhh
Confidence            345788888777653        338999999999999999999999999999999 788999999997321    11  


Q ss_pred             ---cccCCCCCcccHHHHHHHHHHHHHHHHhCCcc---------hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675          145 ---LNRDLSFKAEDRVENIRRIGEVAKLFADAGVI---------CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (279)
Q Consensus       145 ---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~  211 (279)
                         ++.++-|...-..+.++.+.+.+.+-.|....         .-+..+++||++| .+||+.-+++++  .+||-|++
T Consensus       595 ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI--YLLDDplS  672 (1381)
T KOG0054|consen  595 NGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI--YLLDDPLS  672 (1381)
T ss_pred             CCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE--EEEcCcch
Confidence               12223333333345566666666554442222         2344589999999 999999999988  89999999


Q ss_pred             chhccChhhHHHHHhCCCCC
Q 023675          212 VCEARDPKGLYKLAREGKVK  231 (279)
Q Consensus       212 ~l~~R~~~~l~~~~~~~~~~  231 (279)
                      .++....+.+++..-.+.+.
T Consensus       673 AVDahvg~~if~~ci~~~L~  692 (1381)
T KOG0054|consen  673 AVDAHVGKHIFEECIRGLLR  692 (1381)
T ss_pred             hhhHhhhHHHHHHHHHhhhc
Confidence            99999999888765555444

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.22  E-value=6.8e-12  Score=103.56  Aligned_cols=157  Identities=22%  Similarity=0.257  Sum_probs=86.7

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc------cHHHHHHHHHHH-HHHHHh
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE------DRVENIRRIGEV-AKLFAD  172 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~------~~~~~~~~v~~~-~~~~~~  172 (279)
                      .++..|+|+|++||||||+++.|+..++.+     ++|+|.+.....   +....      ....+.....+. ..+...
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~-----~~d~d~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~   73 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYD-----FIDTDHLIEARA---GKSIPEIFEEEGEAAFRELEEEVLAELLAR   73 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHc---CCCHHHHHHHHCHHHHHHHHHHHHHHHHhc
Confidence            467899999999999999999999998544     888887642211   11111      111122222222 222222


Q ss_pred             CCc-chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC-----CCCCCCccccCcCCCCCCC
Q 023675          173 AGV-ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE-----GKVKGFTGIDDPYEPPLNC  246 (279)
Q Consensus       173 ~~~-~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~-----~~~~~~~~~r~~~~~~~~a  246 (279)
                      .+. +..+.........+..++    . ..+.+++++|.+.+.+|..++.......     ..+..+...+.++|.. .+
T Consensus        74 ~~~vi~~g~~~~~~~~~r~~l~----~-~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~  147 (175)
T PRK00131         74 HNLVISTGGGAVLREENRALLR----E-RGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEE-VA  147 (175)
T ss_pred             CCCEEEeCCCEeecHHHHHHHH----h-CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHh-hc
Confidence            222 111111112233343332    2 3355999999999988885431000000     0011111122232221 26


Q ss_pred             ceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          247 EIVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       247 ~~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      +++|+|   +..+++++++.|++.++.
T Consensus       148 dl~idt---~~~~~~e~~~~I~~~v~~  171 (175)
T PRK00131        148 DITVET---DGRSPEEVVNEILEKLEA  171 (175)
T ss_pred             CeEEeC---CCCCHHHHHHHHHHHHHh
Confidence            799999   899999999999999874

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.21  E-value=4.4e-11  Score=127.24  Aligned_cols=132  Identities=17%  Similarity=0.122  Sum_probs=88.8

Q ss_pred             ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccc---cCCccEEEEcCeeccc---ccccCCCCCccc--------H
Q 023675           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKLTYILDGDNCRH---GLNRDLSFKAED--------R  156 (279)
Q Consensus        91 ~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~---~~~~G~i~ldgd~i~~---~~~~~~~~~~~~--------~  156 (279)
                      ..++.|+.+++|++++|+|+||||||||+++|+|++.   .+.+|.|.++|.++.+   .....++|..++        -
T Consensus        76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV  155 (1394)
T TIGR00956        76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTV  155 (1394)
T ss_pred             eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCH
Confidence            3456688999999999999999999999999999862   4679999999987632   111112221111        0


Q ss_pred             HHHHH-------------------HHHHHH-HHHHhCCcch---------hcccCChHHHHH-HHHHHhCCCCCccEEEE
Q 023675          157 VENIR-------------------RIGEVA-KLFADAGVIC---------IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (279)
Q Consensus       157 ~~~~~-------------------~v~~~~-~~~~~~~~~~---------i~~~~~~~~~~r-~~ar~l~~~~~~i~i~l  206 (279)
                      ++.+.                   ...... .++...++..         .+..+|+++++| .++++++.+|++  +++
T Consensus       156 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v--lll  233 (1394)
T TIGR00956       156 GETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI--QCW  233 (1394)
T ss_pred             HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE--EEE
Confidence            00000                   000111 1222233322         134588899999 999999999988  999


Q ss_pred             eCCccchhccChhhHHHH
Q 023675          207 DVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       207 d~p~~~l~~R~~~~l~~~  224 (279)
                      |||+..|+......+.+.
T Consensus       234 DEPTsgLD~~~~~~i~~~  251 (1394)
T TIGR00956       234 DNATRGLDSATALEFIRA  251 (1394)
T ss_pred             eCCCCCcCHHHHHHHHHH
Confidence            999999999887765543

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.21  E-value=1.2e-10  Score=101.09  Aligned_cols=45  Identities=18%  Similarity=0.065  Sum_probs=36.6

Q ss_pred             cccCChHHHHH-HHHHHhCCCC--CccEEEEeCCccchhccChhhHHHHH
Q 023675          179 ACLISPYRKDR-DACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       179 ~~~~~~~~~~r-~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ...+++++++| .++++++.+|  ++  +++|||+..++....+.+++.+
T Consensus       135 ~~~LSgG~~qrv~laral~~~p~~~l--lllDEPt~gLD~~~~~~l~~~l  182 (226)
T cd03270         135 APTLSGGEAQRIRLATQIGSGLTGVL--YVLDEPSIGLHPRDNDRLIETL  182 (226)
T ss_pred             cCcCCHHHHHHHHHHHHHHhCCCCCE--EEEeCCccCCCHHHHHHHHHHH
Confidence            44578888888 8999999887  47  9999999999998877765543

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00243 ABC transporter; Provisional

Probab=99.20  E-value=3e-11  Score=129.65  Aligned_cols=128  Identities=19%  Similarity=0.205  Sum_probs=84.3

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec--cc--cc-----ccCCCCCcccHHHHHHHH
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RH--GL-----NRDLSFKAEDRVENIRRI  163 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i--~~--~~-----~~~~~~~~~~~~~~~~~v  163 (279)
                      ++.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.+++.--  .+  .+     ...+.+......+.+..+
T Consensus       677 ~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~-~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~  755 (1560)
T PTZ00243        677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADA  755 (1560)
T ss_pred             eeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHH
Confidence            4559999999999999999999999999999999 89999998764211  00  01     001111110001111111


Q ss_pred             HHHHH---HHHh--CCc----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          164 GEVAK---LFAD--AGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       164 ~~~~~---~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      ...+.   .+..  .|.    ...+..+++++++| .++|+++.+|++  ++||+|+..++....+.+++
T Consensus       756 ~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~i--llLDEP~saLD~~~~~~i~~  823 (1560)
T PTZ00243        756 VRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDV--YLLDDPLSALDAHVGERVVE  823 (1560)
T ss_pred             HHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEcCccccCCHHHHHHHHH
Confidence            11111   1111  122    12345689999999 999999999998  99999999999877666554

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.20  E-value=2.1e-11  Score=103.60  Aligned_cols=131  Identities=16%  Similarity=0.163  Sum_probs=80.4

Q ss_pred             eecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC---------ccEEEEcCeecccc-cccCCCCCcccHHHH
Q 023675           90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---------KLTYILDGDNCRHG-LNRDLSFKAEDRVEN  159 (279)
Q Consensus        90 ~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~---------~G~i~ldgd~i~~~-~~~~~~~~~~~~~~~  159 (279)
                      +|..+.++++.+| +++|+|+||||||||+++|.+++ .+.         .+.+.++|.+.... ....+++.+++...+
T Consensus        11 ~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~   88 (197)
T cd03278          11 SFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVL-GEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR   88 (197)
T ss_pred             CcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHh-ccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc
Confidence            4556678999999 99999999999999999999987 333         23455555554210 011122222211100


Q ss_pred             -----HHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhC----CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          160 -----IRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       160 -----~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~----~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                           ..++.++...  ..-.......+++++++| .++++++    ..+++  +++|||+..++......+.+.+.
T Consensus        89 ~~~~~~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~i--lllDEP~~~LD~~~~~~l~~~l~  161 (197)
T cd03278          89 YSIISQGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPF--CVLDEVDAALDDANVERFARLLK  161 (197)
T ss_pred             eeEEehhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence                 1122222222  111122345678888888 7788765    34467  89999999999988777665444

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PLN03140 ABC transporter G family member; Provisional

Probab=99.19  E-value=5e-11  Score=126.93  Aligned_cols=130  Identities=15%  Similarity=0.097  Sum_probs=87.9

Q ss_pred             cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC---ccEEEEcCeeccccc-ccCCCCCccc--------HHHH
Q 023675           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHGL-NRDLSFKAED--------RVEN  159 (279)
Q Consensus        92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~---~G~i~ldgd~i~~~~-~~~~~~~~~~--------~~~~  159 (279)
                      .++.|+.+++|++++|+||||||||||+++|+|++ .++   +|.|.++|.++.+.. ...++|..++        .++.
T Consensus       181 L~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l-~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~Et  259 (1470)
T PLN03140        181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL-DPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKET  259 (1470)
T ss_pred             ccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-CCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHH
Confidence            34558999999999999999999999999999999 777   899999998763211 1111111110        0000


Q ss_pred             HHH-------------------------------H----H-----------HHHHHHHhCCcch---------hcccCCh
Q 023675          160 IRR-------------------------------I----G-----------EVAKLFADAGVIC---------IACLISP  184 (279)
Q Consensus       160 ~~~-------------------------------v----~-----------~~~~~~~~~~~~~---------i~~~~~~  184 (279)
                      +..                               +    .           ....++...|+..         ....+|+
T Consensus       260 L~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSG  339 (1470)
T PLN03140        260 LDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISG  339 (1470)
T ss_pred             HHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCc
Confidence            000                               0    0           0011222233321         2246888


Q ss_pred             HHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          185 YRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       185 ~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      |+++| .++++++.+|++  +++|||+..|+......+.+.
T Consensus       340 GerkRVsia~aL~~~p~v--lllDEPTsGLDs~t~~~i~~~  378 (1470)
T PLN03140        340 GQKKRVTTGEMIVGPTKT--LFMDEISTGLDSSTTYQIVKC  378 (1470)
T ss_pred             ccceeeeehhhhcCCCcE--EEEeCCCcCccHHHHHHHHHH
Confidence            99998 899999999988  999999999999887765543

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.15  E-value=1.9e-10  Score=93.07  Aligned_cols=112  Identities=27%  Similarity=0.318  Sum_probs=73.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccHHHHHHHHHHHHHH-HHhCCcch
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKL-FADAGVIC  177 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~  177 (279)
                      +++|+|++||||||+++.|+..++     ..++++|.++..     +.....+.......+...+.+.... ....+..+
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v   75 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLG-----APFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGV   75 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcC-----CEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCE
Confidence            478999999999999999999863     358899998753     2222333333344444444433322 21234445


Q ss_pred             hcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675          178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       178 i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      ++......+..|+.+++++....+..+++++|.+.+.+|...+
T Consensus        76 Vid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R  118 (150)
T cd02021          76 VVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR  118 (150)
T ss_pred             EEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc
Confidence            5555555566777777776444666799999999999988543

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK13947 shikimate kinase; Provisional

Probab=99.14  E-value=2e-11  Score=100.87  Aligned_cols=154  Identities=15%  Similarity=0.189  Sum_probs=85.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc------cHHHHHHHHHHHHHHHHhCCcch
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE------DRVENIRRIGEVAKLFADAGVIC  177 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~  177 (279)
                      .|+|+|++||||||+++.|+..+..+     ++|.|.+.+...   +.+..      ....+......+...+......+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~-----~id~d~~~~~~~---g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~v   74 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFG-----FIDTDKEIEKMT---GMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLV   74 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCC-----EEECchhhhhhc---CCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeE
Confidence            48999999999999999999999766     889887643321   22211      11111111111222222222222


Q ss_pred             h--cccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH-hCCC----CCCCccccCcCCCCCCCceEE
Q 023675          178 I--ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA-REGK----VKGFTGIDDPYEPPLNCEIVL  250 (279)
Q Consensus       178 i--~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~-~~~~----~~~~~~~r~~~~~~~~a~~~i  250 (279)
                      +  +.+......++..++.    .. +.|||+.|.+.+.+|+..+-.... ....    +......|.++|..  ++++|
T Consensus        75 i~~g~g~vl~~~~~~~l~~----~~-~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~~--ad~~I  147 (171)
T PRK13947         75 IATGGGVVLNPENVVQLRK----NG-VVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYDF--ADYTI  147 (171)
T ss_pred             EECCCCCcCCHHHHHHHHh----CC-EEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHh--cCEEE
Confidence            2  1111122233333322    22 349999999999888742200000 0000    01112224456643  67999


Q ss_pred             EccCCCCCCHHHHHHHHHH-HHHhCC
Q 023675          251 KQMGDDCPSPADMVETVVS-YLDENG  275 (279)
Q Consensus       251 ~~~~~~~~~~~e~~~~Il~-~l~~~~  275 (279)
                      ++   +..++++++++|.+ ++..+|
T Consensus       148 dt---~~~~~~~i~~~I~~~~~~~~~  170 (171)
T PRK13947        148 DT---GDMTIDEVAEEIIKAYLKLKN  170 (171)
T ss_pred             EC---CCCCHHHHHHHHHHHHHhhhc
Confidence            99   88999999999998 776654

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.12  E-value=5.6e-10  Score=93.86  Aligned_cols=155  Identities=17%  Similarity=0.192  Sum_probs=81.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc----ccCCCCCcccHHHHHHHH--------------
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSFKAEDRVENIRRI--------------  163 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~----~~~~~~~~~~~~~~~~~v--------------  163 (279)
                      |++++|+||||||||||+++|++.+ .+   .+.+.+..+....    ...+.+..++..+.+..-              
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg   77 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQRE-QT---QLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYG   77 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccC-CC---eEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence            7899999999999999999999987 33   3555554443211    111233333322211110              


Q ss_pred             --HHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCC
Q 023675          164 --GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYE  241 (279)
Q Consensus       164 --~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~  241 (279)
                        .++... ...+..++..   ++...+...+..... .+..+++++|.+.+.+|+.++-  ......+.... .+.++|
T Consensus        78 ~~~~~~~~-l~~g~~VI~~---G~~~~~~~~~~~~~~-~~~vi~l~~s~e~l~~RL~~R~--~~~~~~i~~rl-~r~~~~  149 (186)
T PRK10078         78 VGIEIDLW-LHAGFDVLVN---GSRAHLPQARARYQS-ALLPVCLQVSPEILRQRLENRG--RENASEINARL-ARAARY  149 (186)
T ss_pred             CcHHHHHH-HhCCCEEEEe---ChHHHHHHHHHHcCC-CEEEEEEeCCHHHHHHHHHHhC--CCCHHHHHHHH-HHhhhh
Confidence              001111 1223333322   222233334444443 3445899999999999985320  00000000000 133445


Q ss_pred             CCCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          242 PPLNCEIVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       242 ~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      ..  ++.++..   +..++++++++|...|..
T Consensus       150 ~~--ad~~vi~---~~~s~ee~~~~i~~~l~~  176 (186)
T PRK10078        150 QP--QDCHTLN---NDGSLRQSVDTLLTLLHL  176 (186)
T ss_pred             cc--CCEEEEe---CCCCHHHHHHHHHHHHhh
Confidence            44  5544443   456899999999988864

>PRK13946 shikimate kinase; Provisional

Probab=99.12  E-value=3.1e-11  Score=101.39  Aligned_cols=154  Identities=18%  Similarity=0.201  Sum_probs=88.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHH-HHHHHHHHhCCc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEVAKLFADAGV  175 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v-~~~~~~~~~~~~  175 (279)
                      ...|+|+|++||||||+++.|+..|..+     ++|.|.+.....   +.+..+.     ..++..+ .++...+...+.
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~-----~id~D~~~~~~~---g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~   81 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLGLP-----FLDADTEIERAA---RMTIAEIFAAYGEPEFRDLERRVIARLLKGGP   81 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCC-----eECcCHHHHHHh---CCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC
Confidence            4579999999999999999999998665     889886532211   1111111     0111111 111111222222


Q ss_pred             chhcc--cCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhH----HH-HHhCCCCCCCccccCcCCCCCCCce
Q 023675          176 ICIAC--LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL----YK-LAREGKVKGFTGIDDPYEPPLNCEI  248 (279)
Q Consensus       176 ~~i~~--~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l----~~-~~~~~~~~~~~~~r~~~~~~~~a~~  248 (279)
                      .++..  ........|+.++.   . . +.|||+.|.+.+.+|+.++-    +. ......+......|.++|..  +++
T Consensus        82 ~Vi~~ggg~~~~~~~r~~l~~---~-~-~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~--~dl  154 (184)
T PRK13946         82 LVLATGGGAFMNEETRAAIAE---K-G-ISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAE--ADL  154 (184)
T ss_pred             eEEECCCCCcCCHHHHHHHHc---C-C-EEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHh--CCE
Confidence            22222  12233344444432   2 2 45999999999998875331    00 00000111222335566654  679


Q ss_pred             EEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          249 VLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       249 ~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      ++++   +..+++++++.|+.++..
T Consensus       155 ~i~~---~~~~~~~~~~~i~~~i~~  176 (184)
T PRK13946        155 TVAS---RDVPKEVMADEVIEALAA  176 (184)
T ss_pred             EEEC---CCCCHHHHHHHHHHHHHH
Confidence            9998   889999999999998875

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.10  E-value=1.4e-10  Score=118.80  Aligned_cols=141  Identities=18%  Similarity=0.187  Sum_probs=93.3

Q ss_pred             CCeEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC--ccEEEEcCeecc-ccccc
Q 023675           80 TNILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCR-HGLNR  147 (279)
Q Consensus        80 ~~i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~--~G~i~ldgd~i~-~~~~~  147 (279)
                      .-..|.|+.+.-.         ++++=-++||.+.+|+|.||||||||++.|+++. ..+  +|.|+++|.+.. +....
T Consensus       786 ~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~-t~G~I~Gdi~i~G~p~~q~tF~R  864 (1391)
T KOG0065|consen  786 DVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK-TGGYIEGDILISGFPKDQETFAR  864 (1391)
T ss_pred             ceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc-ccceEEeEEEECCeeCchhhhcc
Confidence            3456777655442         1224567899999999999999999999999997 444  789999998876 33333


Q ss_pred             CCCCCcc--------------------------cHHHHHHHHHHHHHHHHh-----CCcchhcccCChHHHHH-HHHHHh
Q 023675          148 DLSFKAE--------------------------DRVENIRRIGEVAKLFAD-----AGVICIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       148 ~~~~~~~--------------------------~~~~~~~~v~~~~~~~~~-----~~~~~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ..||..+                          +..+..+.+.++..++.-     .-+...+.+++..|+.| -++-++
T Consensus       865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVEL  944 (1391)
T KOG0065|consen  865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVEL  944 (1391)
T ss_pred             ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEE
Confidence            3333332                          112333445555544321     11112334577766666 677889


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHH
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLY  222 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~  222 (279)
                      +.+|+.+ ++||||++.|+.|...-+.
T Consensus       945 vA~P~~i-lFLDEPTSGLDsqaA~~i~  970 (1391)
T KOG0065|consen  945 VANPSSI-LFLDEPTSGLDSQAAAIVM  970 (1391)
T ss_pred             ecCCcee-EEecCCCCCccHHHHHHHH
Confidence            9998544 8999999999999765433

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.09  E-value=2.5e-10  Score=109.26  Aligned_cols=47  Identities=30%  Similarity=0.369  Sum_probs=36.3

Q ss_pred             eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +.--++..+.. +|.+++|.|+|||||||+++.|++.|+     ..++|.+.+
T Consensus       272 ~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~-----~~~~d~g~~  318 (512)
T PRK13477        272 TRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLG-----LLYLDTGAM  318 (512)
T ss_pred             eEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcC-----CeEecCCce
Confidence            33334445555 789999999999999999999999884     447886655

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.08  E-value=1.8e-09  Score=102.52  Aligned_cols=150  Identities=20%  Similarity=0.224  Sum_probs=103.8

Q ss_pred             CCCCeEEeecceeecC-C------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee----c-----
Q 023675           78 KSTNILWHKNSVDKRD-R------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN----C-----  141 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~-~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~----i-----  141 (279)
                      ....|++++++++.+. +      .||+++.|+.+.|+||||||||+|++.|++++ +..+|.+..-.+.    +     
T Consensus       430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW-p~~~G~l~k~~~~~~~~lfflPQ  508 (659)
T KOG0060|consen  430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW-PSTGGKLTKPTDGGPKDLFFLPQ  508 (659)
T ss_pred             ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc-ccCCCeEEecccCCCCceEEecC
Confidence            3456899999998887 2      28999999999999999999999999999987 5567777544332    2     


Q ss_pred             cc-----ccccCCCCC------------cccHHHHHHHHHHHHHHHHhCCcch------hcccCChHHHHH-HHHHHhCC
Q 023675          142 RH-----GLNRDLSFK------------AEDRVENIRRIGEVAKLFADAGVIC------IACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       142 ~~-----~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~~------i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      +.     .++.++.|.            .++..+.... .++..+....|-..      -.+-++++++|| ..||-...
T Consensus       509 rPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~-v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~  587 (659)
T KOG0060|consen  509 RPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILEN-VQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH  587 (659)
T ss_pred             CCCccccchhheeeccCccccccccCCCHHHHHHHHHH-hhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhc
Confidence            00     112222222            1111122222 22333433322222      234589999999 88999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHHhCCCCC
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK  231 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~  231 (279)
                      +|+|  .+|||.++.+..-....+|+..++-.+.
T Consensus       588 kPk~--AiLDE~TSAv~~dvE~~~Yr~~r~~giT  619 (659)
T KOG0060|consen  588 KPKF--AILDECTSAVTEDVEGALYRKCREMGIT  619 (659)
T ss_pred             CCce--EEeechhhhccHHHHHHHHHHHHHcCCe
Confidence            9999  9999999999999988899887765544

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.08  E-value=3e-10  Score=99.92  Aligned_cols=157  Identities=18%  Similarity=0.216  Sum_probs=88.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHH-HHHHHHHHHHhCCcchhcccC
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR-RIGEVAKLFADAGVICIACLI  182 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~i~~~~  182 (279)
                      +|+|+|++||||||+++.|+..+...+...+.+++|.++..+..   +.. ......+ ............+..++.+..
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~---~~~-~~e~~~~~~~~~~i~~~l~~~~~VI~D~~   76 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV---WKE-KYEEFIRDSTLYLIKTALKNKYSVIVDDT   76 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH---hhH-HhHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence            47899999999999999999988544556778888777543210   111 1111111 111112222234555565555


Q ss_pred             ChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChhhHHHHHhCCCCCC--CccccCcC------CCCCCCceEEEc
Q 023675          183 SPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG--FTGIDDPY------EPPLNCEIVLKQ  252 (279)
Q Consensus       183 ~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~--~~~~r~~~------~~~~~a~~~i~~  252 (279)
                      ......|.....++.  ...+..+++++|.+.+.+|..++      ...+..  +......|      |.+..++++|++
T Consensus        77 ~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R------~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~  150 (249)
T TIGR03574        77 NYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER------GEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDT  150 (249)
T ss_pred             chHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC------CCCCCHHHHHHHHHhhCCCCCCCCccCceEEecC
Confidence            444444433333332  22456689999999999987432      111110  00111112      222346788877


Q ss_pred             cCCCC-CCHHHHHHHHHHHHHh
Q 023675          253 MGDDC-PSPADMVETVVSYLDE  273 (279)
Q Consensus       253 ~~~~~-~~~~e~~~~Il~~l~~  273 (279)
                         +. .+.+++++.|+..+..
T Consensus       151 ---~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       151 ---TKKIDYNEILEEILEISEN  169 (249)
T ss_pred             ---CCCCCHHHHHHHHHHHhhc
Confidence               43 5789999999987653

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.06  E-value=1.6e-09  Score=90.32  Aligned_cols=154  Identities=16%  Similarity=0.137  Sum_probs=77.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec-ccccccCC---CCCcccHHHHH----------------H
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC-RHGLNRDL---SFKAEDRVENI----------------R  161 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i-~~~~~~~~---~~~~~~~~~~~----------------~  161 (279)
                      |++++|+|+|||||||+++.|+..+. .. |.+.+..... +.......   ..+.+......                .
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   78 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLA-GD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG   78 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC-cC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence            57899999999999999999999873 32 3332211111 10000000   01111110000                0


Q ss_pred             HHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCC----CCCCcccc
Q 023675          162 RIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGK----VKGFTGID  237 (279)
Q Consensus       162 ~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~----~~~~~~~r  237 (279)
                      .-..+...+ ..+..++..+.   ...+...+....  .+..+||++|.+.+.+|+..+      ...    +.... .+
T Consensus        79 ~~~~i~~~~-~~g~~vv~~g~---~~~~~~~~~~~~--~~~~i~l~~~~~~~~~Rl~~R------~~~~~~~~~~rl-~~  145 (179)
T TIGR02322        79 IPAEIDQWL-EAGDVVVVNGS---RAVLPEARQRYP--NLLVVNITASPDVLAQRLAAR------GRESREEIEERL-AR  145 (179)
T ss_pred             ChHHHHHHH-hcCCEEEEECC---HHHHHHHHHHCC--CcEEEEEECCHHHHHHHHHHc------CCCCHHHHHHHH-HH
Confidence            000111112 22333333322   122334454444  345689999999999998543      110    00111 13


Q ss_pred             CcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          238 DPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       238 ~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      .++|....+++++..   +..++++++.+|.+.|..
T Consensus       146 ~~~~~~~~~~~~vi~---~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       146 SARFAAAPADVTTID---NSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             HhhcccccCCEEEEe---CCCCHHHHHHHHHHHHcc
Confidence            333332235666555   567899999999988764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.05  E-value=7e-10  Score=104.52  Aligned_cols=143  Identities=15%  Similarity=0.141  Sum_probs=95.6

Q ss_pred             CCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----ccccCC
Q 023675           80 TNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDL  149 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~~~~  149 (279)
                      .-+-+.|++|.|.++.      +|-+..++-+++|||||+|||||++++.+.+ .|..|.+.-.....-.    ......
T Consensus       388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl-~p~~G~vs~~~H~~~~~y~Qh~~e~l  466 (614)
T KOG0927|consen  388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL-QPTIGMVSRHSHNKLPRYNQHLAEQL  466 (614)
T ss_pred             CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc-ccccccccccccccchhhhhhhHhhc
Confidence            4578899999998763      7889999999999999999999999999999 8988888766654421    111111


Q ss_pred             CCCcccHHHHH------HHHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675          150 SFKAEDRVENI------RRIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (279)
Q Consensus       150 ~~~~~~~~~~~------~~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~  217 (279)
                      .++.....-.+      .+...+-.++...|+.     .....+|.+++.| ..++.+++.|.+  ++||||+++++---
T Consensus       467 dl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~l--LlLDEPtnhLDi~t  544 (614)
T KOG0927|consen  467 DLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHL--LLLDEPTNHLDIET  544 (614)
T ss_pred             CcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcE--EEecCCCcCCCchh
Confidence            22221111000      0112222233333332     2344577788777 778889999887  99999999998766


Q ss_pred             hhhHHHHH
Q 023675          218 PKGLYKLA  225 (279)
Q Consensus       218 ~~~l~~~~  225 (279)
                      ...+.+.+
T Consensus       545 id~laeai  552 (614)
T KOG0927|consen  545 IDALAEAI  552 (614)
T ss_pred             HHHHHHHH
Confidence            55554433

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.04  E-value=7.2e-10  Score=113.45  Aligned_cols=140  Identities=15%  Similarity=0.178  Sum_probs=97.1

Q ss_pred             CeEEeecceeec------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCC
Q 023675           81 NILWHKNSVDKR------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~  149 (279)
                      .+...++...|.      ++.++.+++|++.++.|+|||||||++++|.|.. .|++|.+++.|.++...     ....+
T Consensus       564 ~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~-~~t~G~a~i~g~~i~~~~~~~~~~~~i  642 (885)
T KOG0059|consen  564 ALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET-KPTSGEALIKGHDITVSTDFQQVRKQL  642 (885)
T ss_pred             eEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc-cCCcceEEEecCccccccchhhhhhhc
Confidence            344555555554      3459999999999999999999999999999999 99999999999988643     23446


Q ss_pred             CCCcccHH-----------HHHHHHH--------H-HHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          150 SFKAEDRV-----------ENIRRIG--------E-VAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       150 ~~~~~~~~-----------~~~~~v~--------~-~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                      ||.++.-.           +.+.++.        + +..++...++..    -+...+++.+.| ..+.+++.+|++  |
T Consensus       643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~v--i  720 (885)
T KOG0059|consen  643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSV--I  720 (885)
T ss_pred             ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCE--E
Confidence            77776421           1122111        1 112222222221    123345555555 889999999988  9


Q ss_pred             EEeCCccchhccChhhHHH
Q 023675          205 FMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~  223 (279)
                      +||||+..++...++.+..
T Consensus       721 ~LDEPstGmDP~arr~lW~  739 (885)
T KOG0059|consen  721 LLDEPSTGLDPKARRHLWD  739 (885)
T ss_pred             EecCCCCCCCHHHHHHHHH
Confidence            9999999999977776554

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.03  E-value=7.3e-11  Score=107.09  Aligned_cols=165  Identities=16%  Similarity=0.121  Sum_probs=96.1

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHH-----HHHHHH--HHHHH
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI--GEVAK  168 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~-----~~~~~v--~~~~~  168 (279)
                      ...+.++..|+|+|++||||||+++.|+..++.+     ++|.|......   .+.+..+..     ..++..  ..+..
T Consensus       127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~-----~id~D~~i~~~---~G~~i~ei~~~~G~~~fr~~e~~~l~~  198 (309)
T PRK08154        127 GRRAARRRRIALIGLRGAGKSTLGRMLAARLGVP-----FVELNREIERE---AGLSVSEIFALYGQEGYRRLERRALER  198 (309)
T ss_pred             hhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCC-----EEeHHHHHHHH---hCCCHHHHHHHHCHHHHHHHHHHHHHH
Confidence            5678899999999999999999999999998655     66766442111   122222111     111111  11222


Q ss_pred             HHHhCCcchhcccCCh--HHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhH-----HH-HHhCCCCCCCccccCcC
Q 023675          169 LFADAGVICIACLISP--YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL-----YK-LAREGKVKGFTGIDDPY  240 (279)
Q Consensus       169 ~~~~~~~~~i~~~~~~--~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l-----~~-~~~~~~~~~~~~~r~~~  240 (279)
                      ++...+..++..+.+.  ....+..   +..  .++.|||++|.+.+.+|+.++.     .. ......+......|.++
T Consensus       199 ll~~~~~~VI~~Ggg~v~~~~~~~~---l~~--~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~  273 (309)
T PRK08154        199 LIAEHEEMVLATGGGIVSEPATFDL---LLS--HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPL  273 (309)
T ss_pred             HHhhCCCEEEECCCchhCCHHHHHH---HHh--CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHH
Confidence            2332333333322221  1122222   222  3566999999999988875321     00 00001122233446677


Q ss_pred             CCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCcc
Q 023675          241 EPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR  278 (279)
Q Consensus       241 ~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~~  278 (279)
                      |..  ++++|++   +..++++++++|+..+.....++
T Consensus       274 y~~--ad~~I~t---~~~s~ee~~~~I~~~l~~~~~~~  306 (309)
T PRK08154        274 YAR--ADAVVDT---SGLTVAQSLARLRELVRPALGLP  306 (309)
T ss_pred             HHh--CCEEEEC---CCCCHHHHHHHHHHHHHHHhccC
Confidence            764  7899999   88899999999999998765544

>PRK00625 shikimate kinase; Provisional

Probab=99.03  E-value=1.1e-10  Score=97.18  Aligned_cols=157  Identities=12%  Similarity=0.106  Sum_probs=83.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCCCCCcc------cHHHHHHHHHHHHHHHHhC-Cc
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKAE------DRVENIRRIGEVAKLFADA-GV  175 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~-~~  175 (279)
                      .|.|+|++||||||+++.|+..+..+     ++|.|++-.. .......+..      ....++..-.+....+... .+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~-----~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~V   76 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLP-----FFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSI   76 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC-----EEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeE
Confidence            58999999999999999999998655     7888865221 1100000111      1111111111111111111 22


Q ss_pred             chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh-HHHHH-hCCCCCCCccccCcCCCCCCCceEEEcc
Q 023675          176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG-LYKLA-REGKVKGFTGIDDPYEPPLNCEIVLKQM  253 (279)
Q Consensus       176 ~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~-l~~~~-~~~~~~~~~~~r~~~~~~~~a~~~i~~~  253 (279)
                      +..+++.....+.+.    .+.... +.+||+.|++.+.+|+.++ +.+.. ....+..++..|.++|... +|++|+++
T Consensus        77 Is~GGg~~~~~e~~~----~l~~~~-~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~-ad~~i~~~  150 (173)
T PRK00625         77 VALGGGTLMIEPSYA----HIRNRG-LLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSI-ADYIFSLD  150 (173)
T ss_pred             EECCCCccCCHHHHH----HHhcCC-EEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHH-CCEEEeCC
Confidence            222322222223332    333323 3499999999999998543 11100 0112334456677777643 77777652


Q ss_pred             ---CCCCCCHHHHHHHHHHHH
Q 023675          254 ---GDDCPSPADMVETVVSYL  271 (279)
Q Consensus       254 ---~~~~~~~~e~~~~Il~~l  271 (279)
                         .|+..+...+++.++..|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~  171 (173)
T PRK00625        151 HVAETSSESLMRACQSFCTLL  171 (173)
T ss_pred             CcccCCCCCHHHHHHHHHHHh
Confidence               235667777888777665

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.00  E-value=1.1e-11  Score=101.65  Aligned_cols=148  Identities=19%  Similarity=0.214  Sum_probs=82.4

Q ss_pred             CCChHHHHHHHHHHccccCCccEEEEcCeecccccc---cCCCCCcccHHHHHHHHHHHHHHHHhC--CcchhcccCChH
Q 023675          111 SGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---RDLSFKAEDRVENIRRIGEVAKLFADA--GVICIACLISPY  185 (279)
Q Consensus       111 sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~i~~~~~~~  185 (279)
                      |||||||+++.|+..|+.+     ++|.|.......   ....+.......++..-.++...+...  .+++.+++....
T Consensus         1 ~GsGKStvg~~lA~~L~~~-----fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~   75 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRP-----FIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLK   75 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSE-----EEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGS
T ss_pred             CCCcHHHHHHHHHHHhCCC-----ccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCc
Confidence            6999999999999999877     999987632111   011111122222222222233322222  344444445555


Q ss_pred             HHHHHHHHHhCCCCCccEEEEeCCccchhccChhh----HHH-HHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCCH
Q 023675          186 RKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG----LYK-LAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSP  260 (279)
Q Consensus       186 ~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~----l~~-~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~  260 (279)
                      .+.++.++.     ....|||+.+++.+.+|+...    ++. ......+......|.++|... +++++++   +..++
T Consensus        76 ~~~~~~L~~-----~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~~-a~~~v~~---~~~~~  146 (158)
T PF01202_consen   76 EENRELLKE-----NGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQA-ADIVVDT---DGSPP  146 (158)
T ss_dssp             HHHHHHHHH-----HSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHHH-SSEEEET---SSCHH
T ss_pred             HHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHhc-CeEEEeC---CCCCH
Confidence            566666652     223499999999999987432    110 000000111222466666653 6788888   77777


Q ss_pred             HHHHHHHHHHHH
Q 023675          261 ADMVETVVSYLD  272 (279)
Q Consensus       261 ~e~~~~Il~~l~  272 (279)
                      ++++++|++.|+
T Consensus       147 ~~i~~~i~~~l~  158 (158)
T PF01202_consen  147 EEIAEEILEFLK  158 (158)
T ss_dssp             HHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhC
Confidence            999999999875

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.2e-09  Score=102.34  Aligned_cols=137  Identities=21%  Similarity=0.238  Sum_probs=80.5

Q ss_pred             CCCeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccE-EEEcCeeccccc---ccC-
Q 023675           79 STNILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT-YILDGDNCRHGL---NRD-  148 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~-i~ldgd~i~~~~---~~~-  148 (279)
                      ..+|...+.++.|..+.     ++++..|..++|||+||+|||||+++|+.-- -..-+. =-+.|+++....   ..+ 
T Consensus        78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~-v~~f~veqE~~g~~t~~~~~~l~~D~  156 (582)
T KOG0062|consen   78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQ-VSGFHVEQEVRGDDTEALQSVLESDT  156 (582)
T ss_pred             ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcC-cCccCchhheeccchHHHhhhhhccH
Confidence            45788888888888644     9999999999999999999999999999821 000000 013344332110   000 


Q ss_pred             --CCCCcccHHHHHH-HHHHHHH-HHHhCCcch-----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675          149 --LSFKAEDRVENIR-RIGEVAK-LFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       149 --~~~~~~~~~~~~~-~v~~~~~-~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~  218 (279)
                        ..|..++..-..+ ...++.. .+...|+..     .....|++=+.| ++||+++.+|++  ++||||++.|+-+..
T Consensus       157 ~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDl--LLLDEPTNhLDv~av  234 (582)
T KOG0062|consen  157 ERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDL--LLLDEPTNHLDVVAV  234 (582)
T ss_pred             HHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCE--EeecCCcccchhHHH
Confidence              0011111000001 1122232 333334322     122344444444 999999999999  999999999987764

>COG0645 Predicted kinase [General function prediction only]

Probab=98.99  E-value=1.4e-09  Score=88.75  Aligned_cols=112  Identities=23%  Similarity=0.279  Sum_probs=92.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccccc--------CCCCCcccHHHHHHHHHHHHHHHHhC
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR--------DLSFKAEDRVENIRRIGEVAKLFADA  173 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~  173 (279)
                      +..+.+.|.+|+||||+++.|+..+     |.+.|..|.+++.+..        .-.|++......+..+...+.++...
T Consensus         1 ~~l~l~~Gl~GsGKstlA~~l~~~l-----gA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~   75 (170)
T COG0645           1 GRLVLVGGLPGSGKSTLARGLAELL-----GAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSS   75 (170)
T ss_pred             CeEEEEecCCCccHhHHHHHHHhhc-----CceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence            3578899999999999999999988     4679999999888765        22366666667777778888888888


Q ss_pred             CcchhcccCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhccCh
Q 023675          174 GVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       174 ~~~~i~~~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~  218 (279)
                      |..++.+.....+..|+.+++++...  .|..+.++.|.+.+..|+.
T Consensus        76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~  122 (170)
T COG0645          76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLA  122 (170)
T ss_pred             CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHH
Confidence            99999998888888898888888775  6767899999999999984

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.97  E-value=2e-09  Score=94.04  Aligned_cols=46  Identities=11%  Similarity=0.034  Sum_probs=35.3

Q ss_pred             cccCChHHHHH-HHHHHhC----CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          179 ACLISPYRKDR-DACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       179 ~~~~~~~~~~r-~~ar~l~----~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +..+++++++| .++++++    ..|++  +++|||+..++....+.+++.+.
T Consensus       156 ~~~lS~G~~~r~~la~~l~~~~~~~~~i--lllDEp~~~ld~~~~~~~~~~l~  206 (243)
T cd03272         156 MQQLSGGQKSLVALALIFAIQKCDPAPF--YLFDEIDAALDAQYRTAVANMIK  206 (243)
T ss_pred             ccccCHHHHHHHHHHHHHHHhccCCCCE--EEEECCccCCCHHHHHHHHHHHH
Confidence            34578888888 8888885    34677  99999999999988777665443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.96  E-value=1.3e-08  Score=90.16  Aligned_cols=139  Identities=19%  Similarity=0.254  Sum_probs=83.1

Q ss_pred             EeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHH-----HHcccc----CC-----------ccEEEEcCeeccc
Q 023675           84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL-----SQALHW----RG-----------KLTYILDGDNCRH  143 (279)
Q Consensus        84 ~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L-----~~~l~~----~~-----------~G~i~ldgd~i~~  143 (279)
                      +++.+..-..+.++.++.|.+++++|+||||||||++.+     .+.+..    |+           .-.+++|..++..
T Consensus         3 ~~~~~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~   82 (261)
T cd03271           3 LKGARENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGR   82 (261)
T ss_pred             eeccchhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCC
Confidence            344444445567889999999999999999999999865     222211    11           1246777777643


Q ss_pred             ccccC---------------------CCCCc---------c-----------cHHHHHHH---HHHHHHHHHhCCcch--
Q 023675          144 GLNRD---------------------LSFKA---------E-----------DRVENIRR---IGEVAKLFADAGVIC--  177 (279)
Q Consensus       144 ~~~~~---------------------~~~~~---------~-----------~~~~~~~~---v~~~~~~~~~~~~~~--  177 (279)
                      ..+..                     ..|.+         .           +..+++..   +.+....+...++..  
T Consensus        83 ~~rs~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~  162 (261)
T cd03271          83 TPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIK  162 (261)
T ss_pred             CCCCcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhh
Confidence            21110                     01111         1           11111111   111222333334322  


Q ss_pred             ---hcccCChHHHHH-HHHHHhCCC---CCccEEEEeCCccchhccChhhHHHH
Q 023675          178 ---IACLISPYRKDR-DACRSMLPE---GDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       178 ---i~~~~~~~~~~r-~~ar~l~~~---~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                         ....+++++++| .++++++.+   |++  +++|||+..++......+.+.
T Consensus       163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~l--llLDEPtsgLD~~~~~~l~~~  214 (261)
T cd03271         163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTL--YILDEPTTGLHFHDVKKLLEV  214 (261)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhcCCCCCcE--EEEECCCCCCCHHHHHHHHHH
Confidence               234578888888 889999986   466  899999999998887765543

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK04182 cytidylate kinase; Provisional

Probab=98.96  E-value=2.2e-09  Score=89.09  Aligned_cols=151  Identities=18%  Similarity=0.257  Sum_probs=81.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-cccccccCCCCCcccHHHH-------HHHHHHHHHHHH-hCC
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDLSFKAEDRVEN-------IRRIGEVAKLFA-DAG  174 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~-~~~  174 (279)
                      +|+|+|++||||||+++.|+..++.+     ++|.++ ++... ...++......+.       ...+........ ..+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~-----~id~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLK-----HVSAGEIFRELA-KERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKED   75 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCc-----EecHHHHHHHHH-HHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCC
Confidence            68999999999999999999988544     777433 22110 0111111111000       011111111111 222


Q ss_pred             cchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh----HHHH---------HhCCCCCCCccccCcCC
Q 023675          175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG----LYKL---------AREGKVKGFTGIDDPYE  241 (279)
Q Consensus       175 ~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~----l~~~---------~~~~~~~~~~~~r~~~~  241 (279)
                      ..++.+....         .+......+.|++++|.+.+.+|+..+    ..+.         .+...+..+++.+.+.+
T Consensus        76 ~~Vi~g~~~~---------~~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~  146 (180)
T PRK04182         76 NVVLEGRLAG---------WMAKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDL  146 (180)
T ss_pred             CEEEEEeecc---------eEecCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence            2222111111         011111234589999999999987533    1111         01112334444444444


Q ss_pred             CCCCCceEEEccCCCCCCHHHHHHHHHHHHHhC
Q 023675          242 PPLNCEIVLKQMGDDCPSPADMVETVVSYLDEN  274 (279)
Q Consensus       242 ~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~  274 (279)
                      .  .++++|++   +..+++++++.|+.+++.+
T Consensus       147 ~--~~d~~idt---~~~~~~~~~~~I~~~~~~~  174 (180)
T PRK04182        147 S--IYDLVINT---SRWDPEGVFDIILTAIDKL  174 (180)
T ss_pred             c--cccEEEEC---CCCCHHHHHHHHHHHHHHH
Confidence            3  47899999   8899999999999988763

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.95  E-value=3.2e-10  Score=93.83  Aligned_cols=153  Identities=18%  Similarity=0.246  Sum_probs=82.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc------cHHHHHHHHHHHHHHHHhCC-c
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE------DRVENIRRIGEVAKLFADAG-V  175 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~-~  175 (279)
                      ..++|+|++||||||+++.|+..++.+     ++|.|.+.....   +....      ..........+....+.... +
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~-----~~d~D~~~~~~~---g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~v   74 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYR-----FVDTDQWLQSTS---NMTVAEIVEREGWAGFRARESAALEAVTAPSTV   74 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC-----EEEccHHHHHHh---CCCHHHHHHHHCHHHHHHHHHHHHHHhcCCCeE
Confidence            468999999999999999999998655     889887643211   11111      11111111112222222211 1


Q ss_pred             chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHH----HhC----CCCCCCccccCcCCCCCCCc
Q 023675          176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL----ARE----GKVKGFTGIDDPYEPPLNCE  247 (279)
Q Consensus       176 ~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~----~~~----~~~~~~~~~r~~~~~~~~a~  247 (279)
                      +..+.........+.+++    ...+ .+||+.|.+.+.+|+..+-...    ...    .+...+...+.++|... ++
T Consensus        75 i~~ggg~vl~~~~~~~l~----~~~~-~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~-a~  148 (171)
T PRK03731         75 IATGGGIILTEENRHFMR----NNGI-VIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREV-AH  148 (171)
T ss_pred             EECCCCccCCHHHHHHHH----hCCE-EEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHh-CC
Confidence            122222222334444333    2233 4899999999998875421000    000    01112233344555432 55


Q ss_pred             eEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          248 IVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       248 ~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      ++|++   + .++++++++|+..+.+
T Consensus       149 ~~Id~---~-~~~e~v~~~i~~~l~~  170 (171)
T PRK03731        149 HIIDA---T-QPPSQVVSEILSALAQ  170 (171)
T ss_pred             EEEcC---C-CCHHHHHHHHHHHHhc
Confidence            77775   4 7899999999988764

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.89  E-value=3.2e-09  Score=95.11  Aligned_cols=142  Identities=20%  Similarity=0.192  Sum_probs=82.1

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHh----CCc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFAD----AGV  175 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~  175 (279)
                      .+.++++|+|++||||||+++.|..      .|...+|+.++.                   .+.+....+..    ..+
T Consensus         4 ~~~~~i~i~G~~GsGKtt~~~~l~~------~g~~~~d~~~~~-------------------L~~~l~~~~~~~~~~~~~   58 (288)
T PRK05416          4 APMRLVIVTGLSGAGKSVALRALED------LGYYCVDNLPPS-------------------LLPKLVELLAQSGGIRKV   58 (288)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHH------cCCeEECCcCHH-------------------HHHHHHHHHHhcCCCCCe
Confidence            4567999999999999999999963      245577765432                   11122222222    122


Q ss_pred             chhcccCCh--HHHHHHHHHHhCCC-CCccEEEEeCCccchhccChhh-----HHHHHhCCCCCCCcccc---CcCCCCC
Q 023675          176 ICIACLISP--YRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKG-----LYKLAREGKVKGFTGID---DPYEPPL  244 (279)
Q Consensus       176 ~~i~~~~~~--~~~~r~~ar~l~~~-~~~i~i~ld~p~~~l~~R~~~~-----l~~~~~~~~~~~~~~~r---~~~~~~~  244 (279)
                      ....+....  ....++....+... ..+..|||+++.+.+.+|+...     +...  ......+...+   .+++.. 
T Consensus        59 av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~--~~l~e~I~~eR~~l~pl~~~-  135 (288)
T PRK05416         59 AVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGD--GSLLEGIELERELLAPLRER-  135 (288)
T ss_pred             EEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCC--ccHHHHHHHHHhhhhhHHHh-
Confidence            223333222  11222334443333 2344589999999999997521     1110  00011122223   334443 


Q ss_pred             CCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          245 NCEIVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       245 ~a~~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                       ++++|||   +..++++++++|++.+..
T Consensus       136 -ADivIDT---s~ls~~el~e~I~~~l~~  160 (288)
T PRK05416        136 -ADLVIDT---SELSVHQLRERIRERFGG  160 (288)
T ss_pred             -CCEEEEC---CCCCHHHHHHHHHHHHhc
Confidence             7899999   889999999999998854

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.88  E-value=4.6e-09  Score=90.24  Aligned_cols=139  Identities=15%  Similarity=0.081  Sum_probs=74.1

Q ss_pred             CeEEeecceeecCCc--ceecc-CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc--Ceecccc-cccCCCCCc-
Q 023675           81 NILWHKNSVDKRDRQ--QLLQQ-KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD--GDNCRHG-LNRDLSFKA-  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~--sl~i~-~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld--gd~i~~~-~~~~~~~~~-  153 (279)
                      .|+++|.. +|..+.  +|... +|++++|+|+||||||||+++|+..+..+..+....+  .+.+... ....+.+.. 
T Consensus         5 ~i~l~nf~-~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~   83 (213)
T cd03279           5 KLELKNFG-PFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQ   83 (213)
T ss_pred             EEEEECCc-CcCCceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEE
Confidence            46777776 555444  44332 4789999999999999999999965422222222221  0111000 000001000 


Q ss_pred             -------------ccHHHHHHHHHHHHHH-HHhCCcchhcccCChHHHHH-HHHHHhCC----------CCCccEEEEeC
Q 023675          154 -------------EDRVENIRRIGEVAKL-FADAGVICIACLISPYRKDR-DACRSMLP----------EGDFIEVFMDV  208 (279)
Q Consensus       154 -------------~~~~~~~~~v~~~~~~-~~~~~~~~i~~~~~~~~~~r-~~ar~l~~----------~~~~i~i~ld~  208 (279)
                                   .+...+.+.+. .... +.. -....+..+++++++| .++++++.          +|++  +++||
T Consensus        84 ~~~~~~~~~r~~gl~~~~~~~~~~-l~~g~l~~-~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~--lllDE  159 (213)
T cd03279          84 LGGKKYRVERSRGLDYDQFTRIVL-LPQGEFDR-FLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEA--LFIDE  159 (213)
T ss_pred             ECCeEEEEEEecCCCHHHHHHhhh-hhhcchHH-HhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCE--EEEeC
Confidence                         01111111110 0000 111 0112234577788887 88888864          3456  99999


Q ss_pred             CccchhccChhhHHHH
Q 023675          209 PLQVCEARDPKGLYKL  224 (279)
Q Consensus       209 p~~~l~~R~~~~l~~~  224 (279)
                      |+..++......+.+.
T Consensus       160 p~~~lD~~~~~~~~~~  175 (213)
T cd03279         160 GFGTLDPEALEAVATA  175 (213)
T ss_pred             CcccCCHHHHHHHHHH
Confidence            9999998877665443

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.87  E-value=3.3e-09  Score=90.62  Aligned_cols=134  Identities=16%  Similarity=0.141  Sum_probs=75.2

Q ss_pred             eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHH----HccccCCccEEEEcCeeccccc-ccCCCCCcccH
Q 023675           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS----QALHWRGKLTYILDGDNCRHGL-NRDLSFKAEDR  156 (279)
Q Consensus        82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~----~~l~~~~~G~i~ldgd~i~~~~-~~~~~~~~~~~  156 (279)
                      +.++|.. +|.+...+.+.+| +++|+|+||||||||+++|.    |.. .++.+.+..+.+.+.... ...+.+..+..
T Consensus         4 l~l~nfr-~~~~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~-~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~   80 (204)
T cd03240           4 LSIRNIR-SFHERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGEL-PPNSKGGAHDPKLIREGEVRAQVKLAFENA   80 (204)
T ss_pred             EEEECcc-cccCceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCC-CcccccccchHHHHhCCCCcEEEEEEEEeC
Confidence            4555542 2234456777777 99999999999999999995    665 555554432222221110 00000000000


Q ss_pred             ----------HHHHHHH-----HHHHHHHHhCCcchhcccCChHHHHH-------HHHHHhCCCCCccEEEEeCCccchh
Q 023675          157 ----------VENIRRI-----GEVAKLFADAGVICIACLISPYRKDR-------DACRSMLPEGDFIEVFMDVPLQVCE  214 (279)
Q Consensus       157 ----------~~~~~~v-----~~~~~~~~~~~~~~i~~~~~~~~~~r-------~~ar~l~~~~~~i~i~ld~p~~~l~  214 (279)
                                ...+..+     .++...+     ......++.+++++       .++++++.+|++  +++|||+..++
T Consensus        81 ~~~~~~v~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~LS~G~~~~~~la~rlala~al~~~p~i--lllDEP~~~LD  153 (204)
T cd03240          81 NGKKYTITRSLAILENVIFCHQGESNWPL-----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGI--LALDEPTTNLD  153 (204)
T ss_pred             CCCEEEEEEEhhHhhceeeechHHHHHHH-----hcCccccCccHHHHHHHHHHHHHHHHhccCCCE--EEEcCCccccC
Confidence                      0111110     0011111     11233566777774       577888899888  99999999999


Q ss_pred             ccChh-hHHHHH
Q 023675          215 ARDPK-GLYKLA  225 (279)
Q Consensus       215 ~R~~~-~l~~~~  225 (279)
                      ..... .+.+.+
T Consensus       154 ~~~~~~~l~~~l  165 (204)
T cd03240         154 EENIEESLAEII  165 (204)
T ss_pred             HHHHHHHHHHHH
Confidence            88777 655543

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=98.84  E-value=6.4e-09  Score=85.45  Aligned_cols=45  Identities=22%  Similarity=0.322  Sum_probs=41.9

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      |..+..|+++=+|||||||||||+..++|++  |++|+|.++|.++.
T Consensus        19 S~qv~aGe~~HliGPNGaGKSTLLA~lAGm~--~~sGsi~~~G~~l~   63 (248)
T COG4138          19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGSGSIQFAGQPLE   63 (248)
T ss_pred             ccccccceEEEEECCCCccHHHHHHHHhCCC--CCCceEEECCcchh
Confidence            6788899999999999999999999999985  78999999999985

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.83  E-value=2.3e-09  Score=85.64  Aligned_cols=112  Identities=21%  Similarity=0.262  Sum_probs=69.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc----ccHHHHHHHHHHHHHHHHhCCcchhc
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA----EDRVENIRRIGEVAKLFADAGVICIA  179 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~i~  179 (279)
                      +|.++|++||||||+++.|.+.+.     ...++.|.++..+........    .........+..........|...++
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv   75 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVV   75 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence            588999999999999999998873     568999888654433211111    11112222333333333455666666


Q ss_pred             ccCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhccChhh
Q 023675          180 CLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       180 ~~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      +........|+....++...  ++..+++++|.+.+.+|+..+
T Consensus        76 d~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R  118 (143)
T PF13671_consen   76 DNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR  118 (143)
T ss_dssp             ESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred             ccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence            66555556666666555422  455689999999999987433

...

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.81  E-value=3.1e-08  Score=94.05  Aligned_cols=143  Identities=20%  Similarity=0.224  Sum_probs=97.5

Q ss_pred             CeEEeecceee-cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcc
Q 023675           81 NILWHKNSVDK-RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE  154 (279)
Q Consensus        81 ~i~~~~~~~~~-~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~  154 (279)
                      .+++++++..- ..+.||++.+||+++|.|..|||+|-++++|.|.. .+.+|+|.+||.++...     +...++|.++
T Consensus       263 ~l~v~~l~~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~-~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~E  341 (500)
T COG1129         263 VLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR-PASSGEILLDGKPVRIRSPRDAIKAGIAYVPE  341 (500)
T ss_pred             EEEEecCCCCCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC-cCCCceEEECCEEccCCCHHHHHHcCCEeCCc
Confidence            35677776542 45679999999999999999999999999999966 78899999999987421     2223344444


Q ss_pred             cHH--------------------H-----HHH--HHHHHHH-HHHh-----CCcchhcccCChHHHHH-HHHHHhCCCCC
Q 023675          155 DRV--------------------E-----NIR--RIGEVAK-LFAD-----AGVICIACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       155 ~~~--------------------~-----~~~--~v~~~~~-~~~~-----~~~~~i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      ++.                    .     ++.  ...+.+. ....     .+....+..+|++.+|+ -++|-+..+|+
T Consensus       342 DRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~  421 (500)
T COG1129         342 DRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPK  421 (500)
T ss_pred             ccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCC
Confidence            331                    0     000  0011111 1111     11222445677777777 78888999998


Q ss_pred             ccEEEEeCCccchhccChhhHHHHHh
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +  ++||+|+-.++--.+..+|+.++
T Consensus       422 v--LilDEPTRGIDVGAK~eIy~li~  445 (500)
T COG1129         422 V--LILDEPTRGIDVGAKAEIYRLIR  445 (500)
T ss_pred             E--EEECCCCcCcccchHHHHHHHHH
Confidence            8  99999999998888887776443

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.81  E-value=8.3e-09  Score=90.82  Aligned_cols=46  Identities=4%  Similarity=0.016  Sum_probs=35.3

Q ss_pred             cccCChHHHHH-HHHHHhC----CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          179 ACLISPYRKDR-DACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       179 ~~~~~~~~~~r-~~ar~l~----~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ...+++++++| .++++++    ..+++  +++|||+..++......+++.++
T Consensus       164 ~~~lS~G~~qr~~la~al~~~~~~~~~i--lllDEPt~~ld~~~~~~~~~~l~  214 (251)
T cd03273         164 LTELSGGQRSLVALSLILALLLFKPAPM--YILDEVDAALDLSHTQNIGRMIK  214 (251)
T ss_pred             ccccCHHHHHHHHHHHHHHHhhccCCCE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence            34578888888 8888775    45677  99999999999888777665444

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK03839 putative kinase; Provisional

Probab=98.80  E-value=9.4e-09  Score=85.79  Aligned_cols=148  Identities=16%  Similarity=0.160  Sum_probs=75.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCC
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS  183 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~  183 (279)
                      .|+|+|+|||||||+++.|++.+..+     ++|.+++.........+... ....++.+........ .+...+.++..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~-----~id~d~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~vIidG~~   74 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYE-----YVDLTEFALKKGIGEEKDDE-MEIDFDKLAYFIEEEF-KEKNVVLDGHL   74 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhhhhhhcCCcccCChh-hhcCHHHHHHHHHHhc-cCCCEEEEecc
Confidence            58999999999999999999998544     67766552111100011111 1111122211111111 11112222210


Q ss_pred             hHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHH--HHh---CCCCCCCccccCcCCCCCCCceEEEccCCCCC
Q 023675          184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK--LAR---EGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCP  258 (279)
Q Consensus       184 ~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~--~~~---~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~  258 (279)
                                ..+..++++ ++++++.+.+.+|+.++-..  ...   ..++..+. ....|+.. .+.++|++   +..
T Consensus        75 ----------~~l~~~~~v-i~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~-~~~~~~~r-~~~~~Id~---~~~  138 (180)
T PRK03839         75 ----------SHLLPVDYV-IVLRAHPKIIKERLKERGYSKKKILENVEAELVDVC-LCEALEEK-EKVIEVDT---TGK  138 (180)
T ss_pred             ----------ccccCCCEE-EEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHhc-CCEEEEEC---CCC
Confidence                      012234554 89999999999987533100  000   00000000 00112222 24467776   667


Q ss_pred             CHHHHHHHHHHHHHhC
Q 023675          259 SPADMVETVVSYLDEN  274 (279)
Q Consensus       259 ~~~e~~~~Il~~l~~~  274 (279)
                      ++++++++|++.++..
T Consensus       139 s~eev~~~I~~~l~~~  154 (180)
T PRK03839        139 TPEEVVEEILELIKSG  154 (180)
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            9999999999998753

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.80  E-value=6.1e-09  Score=79.44  Aligned_cols=43  Identities=33%  Similarity=0.231  Sum_probs=38.2

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      +..+|.+++|++++|+|+||||||||++++.       +|.+.++|+++.
T Consensus         6 ~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~   48 (107)
T cd00820           6 HGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNV   48 (107)
T ss_pred             EeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHH
Confidence            4557899999999999999999999999986       678999999884

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.79  E-value=1.2e-08  Score=91.85  Aligned_cols=115  Identities=23%  Similarity=0.225  Sum_probs=69.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccC-----CCCCcccHHHHHHHHHHHHHHHHhCCcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKAEDRVENIRRIGEVAKLFADAGVI  176 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~  176 (279)
                      ..+++++|++||||||+++.|+..+ .   +.++++.|.++..+...     ..+..+..........+.+......+..
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~-~---~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~   77 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKN-P---KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKS   77 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHC-C---CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCe
Confidence            3678999999999999999999988 2   46789998886543221     1122111111111112222222234555


Q ss_pred             hhcccCChHHHHHHHHHHhCCC--CCccEEEEeCCccchhccChhh
Q 023675          177 CIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       177 ~i~~~~~~~~~~r~~ar~l~~~--~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      ++++.......++.....+++.  ..+..+++++|.+.+.+|..++
T Consensus        78 vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R  123 (300)
T PHA02530         78 VIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR  123 (300)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc
Confidence            6666555555566555554432  3455689999999999998654

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.78  E-value=6.5e-08  Score=91.28  Aligned_cols=147  Identities=16%  Similarity=0.186  Sum_probs=95.9

Q ss_pred             CCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec------cc----
Q 023675           80 TNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC------RH----  143 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i------~~----  143 (279)
                      ..|.++|+.+--+...      +|.+.+|..+.|+||||||||+|.++|.|++ +...|...+=..+.      +.    
T Consensus       480 ~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW-Pvy~g~L~~P~~~~mFYIPQRPYms~  558 (728)
T KOG0064|consen  480 NGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW-PVYNGLLSIPRPNNIFYIPQRPYMSG  558 (728)
T ss_pred             cceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC-cccCCeeecCCCcceEeccCCCccCc
Confidence            4478888876665433      8999999999999999999999999999986 33333332211110      00    


Q ss_pred             -ccccC------------CCCCcccHHHHHHHHHHHHHHHHhCC-cchh---cccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675          144 -GLNRD------------LSFKAEDRVENIRRIGEVAKLFADAG-VICI---ACLISPYRKDR-DACRSMLPEGDFIEVF  205 (279)
Q Consensus       144 -~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~i---~~~~~~~~~~r-~~ar~l~~~~~~i~i~  205 (279)
                       .++.+            -++.++++...+..+ .+..+.+..+ ..++   -+-++++++|| ..||-....|++  .+
T Consensus       559 gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v-~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPky--al  635 (728)
T KOG0064|consen  559 GTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIV-HLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKY--AL  635 (728)
T ss_pred             CcccceeecCCcHHHHHhcCCCHHHHHHHHHHh-hHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcch--hh
Confidence             01111            134444443333322 2333444333 3222   23478889998 888988899988  89


Q ss_pred             EeCCccchhccChhhHHHHHhCCCC
Q 023675          206 MDVPLQVCEARDPKGLYKLAREGKV  230 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~~~~~~~~  230 (279)
                      |||-++.+.-.....+++.++...+
T Consensus       636 LDEcTsAvsidvE~~i~~~ak~~gi  660 (728)
T KOG0064|consen  636 LDECTSAVSIDVEGKIFQAAKDAGI  660 (728)
T ss_pred             hhhhhcccccchHHHHHHHHHhcCc
Confidence            9999999888888888887776543

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.77  E-value=1.3e-09  Score=88.25  Aligned_cols=140  Identities=20%  Similarity=0.230  Sum_probs=71.7

Q ss_pred             EEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCccc------HHHHHHHHHHHHHHHHhCCcchh
Q 023675          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED------RVENIRRIGEVAKLFADAGVICI  178 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~i  178 (279)
                      |+|+|++||||||+++.|+..+..+     +++.|.+.....   +....+      ...+..........+...+..++
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~-----~~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi   73 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLP-----FVDLDELIEQRA---GMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVI   73 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCC-----EEEchHHHHHHc---CCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEE
Confidence            7899999999999999999998655     788887643221   111111      11112221222222223222222


Q ss_pred             ccc--CChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHH-HHhCC---CCCCCccccCcCCCCCCCceEEEc
Q 023675          179 ACL--ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK-LAREG---KVKGFTGIDDPYEPPLNCEIVLKQ  252 (279)
Q Consensus       179 ~~~--~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~-~~~~~---~~~~~~~~r~~~~~~~~a~~~i~~  252 (279)
                      ..+  .......+.    .+.. ..+.||+++|.+.+.+|+.++.-. .....   .+..+...+.++|... +++++++
T Consensus        74 ~~g~~~i~~~~~~~----~~~~-~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y~~~-ad~~i~~  147 (154)
T cd00464          74 ATGGGAVLREENRR----LLLE-NGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLYREV-ADLTIDT  147 (154)
T ss_pred             ECCCCccCcHHHHH----HHHc-CCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHHHHh-CcEEEEC
Confidence            211  112222222    2222 235599999999998887432100 00000   1222233345555432 7899998


Q ss_pred             cCCCCCCHH
Q 023675          253 MGDDCPSPA  261 (279)
Q Consensus       253 ~~~~~~~~~  261 (279)
                         ++.+++
T Consensus       148 ---~~~~~~  153 (154)
T cd00464         148 ---DELSPE  153 (154)
T ss_pred             ---CCCCCC
Confidence               666654

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=3e-08  Score=91.69  Aligned_cols=137  Identities=19%  Similarity=0.139  Sum_probs=86.5

Q ss_pred             CCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc
Q 023675           80 TNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA  153 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~  153 (279)
                      ..+-+++|+|.|+...      +|-+.--..|+||||||.|||||+++|.|.+ .|..|...-+-. ++      +++-.
T Consensus       585 PvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl-~P~~GE~RKnhr-L~------iG~Fd  656 (807)
T KOG0066|consen  585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL-DPNDGELRKNHR-LR------IGWFD  656 (807)
T ss_pred             CeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCC-CCCcchhhccce-ee------eechh
Confidence            3467899999996533      6777788899999999999999999999999 898887643321 21      11111


Q ss_pred             ccH----------HHHHHHH----HHHHH-HHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675          154 EDR----------VENIRRI----GEVAK-LFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (279)
Q Consensus       154 ~~~----------~~~~~~v----~~~~~-~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~  212 (279)
                      +..          .+++.+.    .+-+. .+..+|+.     .-+..++++++.| ..+.-.+..|++  ++||+|+..
T Consensus       657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDv--lILDEPTNN  734 (807)
T KOG0066|consen  657 QHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDV--LILDEPTNN  734 (807)
T ss_pred             hhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCE--EEecCCCCC
Confidence            110          1111110    00010 11112221     1234578888888 666666777888  999999999


Q ss_pred             hhccChhhHHHHHh
Q 023675          213 CEARDPKGLYKLAR  226 (279)
Q Consensus       213 l~~R~~~~l~~~~~  226 (279)
                      ++-..-..|...+.
T Consensus       735 LDIESIDALaEAIn  748 (807)
T KOG0066|consen  735 LDIESIDALAEAIN  748 (807)
T ss_pred             cchhhHHHHHHHHH
Confidence            87765555555444

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.73  E-value=4.8e-08  Score=92.34  Aligned_cols=52  Identities=23%  Similarity=0.168  Sum_probs=44.4

Q ss_pred             cCCCCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccC
Q 023675           77 AKSTNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR  129 (279)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~  129 (279)
                      +.+..+.+.+++++|...     ..|.+.+|+.++|+|+|||||||+++++.+.. .|
T Consensus        71 ~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e-~P  127 (614)
T KOG0927|consen   71 PISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGRE-VP  127 (614)
T ss_pred             cccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCC-CC
Confidence            445678888888888643     38999999999999999999999999999987 44

>PRK08233 hypothetical protein; Provisional

Probab=98.72  E-value=9.2e-08  Score=79.47  Aligned_cols=162  Identities=22%  Similarity=0.298  Sum_probs=81.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc-------cccccCCCCCcccHHHHHHHHHHHHHHHHhC
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR-------HGLNRDLSFKAEDRVENIRRIGEVAKLFADA  173 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  173 (279)
                      ++.+|+|.|++||||||+++.|+..+.  ....+.+|.....       ........+.........   .++.......
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~   76 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLI---KDIQELIAKS   76 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHH---HHHHHHHcCC
Confidence            467999999999999999999999883  2345666665431       111111112111111111   1122222222


Q ss_pred             Ccc-hhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCC----CCCccccCc-CCC-----
Q 023675          174 GVI-CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV----KGFTGIDDP-YEP-----  242 (279)
Q Consensus       174 ~~~-~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~----~~~~~~r~~-~~~-----  242 (279)
                      +.. .+..+...  ...+..+..+   ++ .|+++.|.+.+..|..++-........+    ..+.....+ |+.     
T Consensus        77 ~~~~vivd~~~~--~~~~~~~~~~---d~-~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~  150 (182)
T PRK08233         77 NVDYIIVDYPFA--YLNSEMRQFI---DV-TIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTV  150 (182)
T ss_pred             CceEEEEeeehh--hccHHHHHHc---CE-EEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcC
Confidence            111 12222111  1111122222   33 4899999999877754332111111111    112111111 211     


Q ss_pred             CCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCc
Q 023675          243 PLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFL  277 (279)
Q Consensus       243 ~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~  277 (279)
                      +..++++|+.    ..+++++.++|...|..+.++
T Consensus       151 ~~~~~~vId~----~~~~e~i~~~i~~~l~~~~~~  181 (182)
T PRK08233        151 KPNADIVLDG----ALSVEEIINQIEEELYRREVI  181 (182)
T ss_pred             ccCCeEEEcC----CCCHHHHHHHHHHHHHhCCcc
Confidence            1135566654    578999999999999887654

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.69  E-value=3.2e-08  Score=93.34  Aligned_cols=48  Identities=17%  Similarity=0.210  Sum_probs=41.5

Q ss_pred             cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCcc-EEEEcCeecc
Q 023675           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-TYILDGDNCR  142 (279)
Q Consensus        92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G-~i~ldgd~i~  142 (279)
                      .++.++++++|++++|+|+||||||||++  .+.+ .|.+| .|++||.++.
T Consensus        22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-~~~sGg~I~ldg~~~~   70 (504)
T TIGR03238        22 LVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-KFSEGYEFFLDATHSF   70 (504)
T ss_pred             HhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-CCCCCCEEEECCEECC
Confidence            35668999999999999999999999999  5666 56666 7999999885

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.66  E-value=6.4e-08  Score=82.03  Aligned_cols=72  Identities=17%  Similarity=0.310  Sum_probs=45.4

Q ss_pred             CCCCccEEEEeCCccchhccChhh------------HHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCCHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKG------------LYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMV  264 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~------------l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~  264 (279)
                      .++++ -+||+.+.+...+|--+.            +++.+.+.+.......-.|+.+.. .-+.|||   +.++++|++
T Consensus       136 PdA~l-KiFLtAS~e~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~-DA~~iDT---s~msieeVv  210 (222)
T COG0283         136 PDAEL-KIFLTASPEERAERRYKQLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAE-DALLLDT---SSLSIEEVV  210 (222)
T ss_pred             CCCCe-EEEEeCCHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCC-CeEEEEC---CCCcHHHHH
Confidence            33344 478999988877764322            222222333333344445565543 2378888   999999999


Q ss_pred             HHHHHHHHh
Q 023675          265 ETVVSYLDE  273 (279)
Q Consensus       265 ~~Il~~l~~  273 (279)
                      ++|+.++++
T Consensus       211 ~~il~~~~~  219 (222)
T COG0283         211 EKILELIRQ  219 (222)
T ss_pred             HHHHHHHHH
Confidence            999998874

>TIGR00017 cmk cytidylate kinase

Probab=98.66  E-value=1.7e-07  Score=80.88  Aligned_cols=25  Identities=48%  Similarity=0.612  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+++|.||+||||||+++.|++.++
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~   27 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLG   27 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999998774

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.64  E-value=9.2e-08  Score=88.95  Aligned_cols=121  Identities=17%  Similarity=0.175  Sum_probs=74.4

Q ss_pred             eEEeecceeecCCcce-----eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc--
Q 023675           82 ILWHKNSVDKRDRQQL-----LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE--  154 (279)
Q Consensus        82 i~~~~~~~~~~~~~sl-----~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~--  154 (279)
                      ++|.+...+|.+ -.|     .+..||+++++||||-||||++++|+|.+ .|++|.    ..+++-      +|.++  
T Consensus       343 v~y~~~~k~~g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~i-kPdeg~----~~~~~v------SyKPQyI  410 (591)
T COG1245         343 VEYPDLKKTYGD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVI-KPDEGS----EEDLKV------SYKPQYI  410 (591)
T ss_pred             eecchheeecCc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccc-cCCCCC----CccceE------eecceee
Confidence            455555555542 122     45678999999999999999999999999 898886    222221      12221  


Q ss_pred             -----cH-HHHHHHHHHH--------HHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675          155 -----DR-VENIRRIGEV--------AKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (279)
Q Consensus       155 -----~~-~~~~~~v~~~--------~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~  215 (279)
                           .. ...+......        ..++....+.    ..+..+|+++-|| +++.++.+++++  -+||||.+.|+-
T Consensus       411 ~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADl--YllDEPSA~LDv  488 (591)
T COG1245         411 SPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADL--YLLDEPSAYLDV  488 (591)
T ss_pred             cCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCE--EEecCchhhccH
Confidence                 00 1111110000        0001111111    1345688899888 888899998888  899999998865


Q ss_pred             c
Q 023675          216 R  216 (279)
Q Consensus       216 R  216 (279)
                      -
T Consensus       489 E  489 (591)
T COG1245         489 E  489 (591)
T ss_pred             H
Confidence            3

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.62  E-value=3.4e-07  Score=80.39  Aligned_cols=50  Identities=24%  Similarity=0.181  Sum_probs=34.9

Q ss_pred             eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE
Q 023675           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY  134 (279)
Q Consensus        82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i  134 (279)
                      ++++|. -+|....++...++ +++|+|+||||||||+.+|...+ .+..|.+
T Consensus         4 i~l~nf-~~~~~~~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l-~~~~~~~   53 (247)
T cd03275           4 LELENF-KSYKGRHVIGPFDR-FTCIIGPNGSGKSNLMDAISFVL-GEKSSHL   53 (247)
T ss_pred             EEEECc-cccCCCeeecCCCC-eEEEECCCCCCHHHHHHHHHHHh-CCCcccc
Confidence            556664 24544444544444 99999999999999999999988 4433433

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.60  E-value=1.3e-07  Score=77.67  Aligned_cols=148  Identities=18%  Similarity=0.225  Sum_probs=74.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHH-------HHHHHHHHHHHHHH-hCCc
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-------ENIRRIGEVAKLFA-DAGV  175 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~-~~~~  175 (279)
                      +|+|.|++||||||+++.|+..++.+     +++.+++...+....+.......       .....+......+. ..+.
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   76 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLK-----LISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKN   76 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCc-----eecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCC
Confidence            68999999999999999999988544     77765542221111122211100       00111111111111 2122


Q ss_pred             chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhH-------HHHHh------CCCCCCCccccCcCCC
Q 023675          176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL-------YKLAR------EGKVKGFTGIDDPYEP  242 (279)
Q Consensus       176 ~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l-------~~~~~------~~~~~~~~~~r~~~~~  242 (279)
                      . ++.+....     ..  +-..+++ .|++++|.+.+.+|..++-       .+...      ...+..+++  ..+..
T Consensus        77 ~-Vi~g~~~~-----~~--~~~~~d~-~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~--~~~~~  145 (171)
T TIGR02173        77 V-VLESRLAG-----WI--VREYADV-KIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYG--IDIDD  145 (171)
T ss_pred             E-EEEecccc-----ee--ecCCcCE-EEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhC--CCccc
Confidence            2 22221110     00  0111243 4899999999988875430       00000      001111111  11222


Q ss_pred             CCCCceEEEccCCCCCCHHHHHHHHHHHH
Q 023675          243 PLNCEIVLKQMGDDCPSPADMVETVVSYL  271 (279)
Q Consensus       243 ~~~a~~~i~~~~~~~~~~~e~~~~Il~~l  271 (279)
                      +..-|++|+|   +..++++ ++.|..++
T Consensus       146 ~~~ydl~i~t---~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       146 LSIYDLVINT---SNWDPNN-VDIILDAL  170 (171)
T ss_pred             cccccEEEEC---CCCCHHH-HHHHHHHh
Confidence            3345699999   9999999 99998765

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.60  E-value=3.4e-07  Score=77.80  Aligned_cols=28  Identities=43%  Similarity=0.561  Sum_probs=26.3

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ++|++++|+|+||||||||++.|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999999873

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.60  E-value=1.9e-07  Score=85.99  Aligned_cols=128  Identities=16%  Similarity=0.177  Sum_probs=78.6

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-------cCCccEEEEcCeecccccccCCC--CCcccHHHHHHH-
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-------WRGKLTYILDGDNCRHGLNRDLS--FKAEDRVENIRR-  162 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-------~~~~G~i~ldgd~i~~~~~~~~~--~~~~~~~~~~~~-  162 (279)
                      ++.+|.+++|++++++|.|||||||++++|+|...       .|++|.|.+--+.+...+.+.+.  |......+++.. 
T Consensus       400 r~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~  479 (593)
T COG2401         400 RNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSK  479 (593)
T ss_pred             eceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhc
Confidence            34599999999999999999999999999999853       56777776655444322222221  221122222211 


Q ss_pred             ---HHHHHHHHHhCCcchh------cccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675          163 ---IGEVAKLFADAGVICI------ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (279)
Q Consensus       163 ---v~~~~~~~~~~~~~~i------~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~  222 (279)
                         +.....++...|+..-      ..-++.+++.| .+|+.+...|++  ++.|+-.+.+++-...++.
T Consensus       480 tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~--~~iDEF~AhLD~~TA~rVA  547 (593)
T COG2401         480 TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNV--LLIDEFAAHLDELTAVRVA  547 (593)
T ss_pred             cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCc--EEhhhhhhhcCHHHHHHHH
Confidence               1112233444444332      12366777777 777888888777  7778877777665544433

>PRK14532 adenylate kinase; Provisional

Probab=98.57  E-value=8.9e-08  Score=80.40  Aligned_cols=33  Identities=21%  Similarity=0.185  Sum_probs=27.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++|+|++||||||+++.|+..++     ..+++.+++
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g-----~~~is~~d~   34 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG-----MVQLSTGDM   34 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC-----CeEEeCcHH
Confidence            378999999999999999999884     447886554

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.57  E-value=2e-07  Score=77.88  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ..+++|+|++||||||+++.|+..++
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g   28 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYG   28 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999997763

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.57  E-value=2e-07  Score=75.49  Aligned_cols=149  Identities=23%  Similarity=0.354  Sum_probs=80.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEc-CeecccccccCCCCCcccHHHHHH-------HHHHHHHHHHhCCc
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLNRDLSFKAEDRVENIR-------RIGEVAKLFADAGV  175 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld-gd~i~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~  175 (279)
                      +|.+-|++||||||+++.|+..|.-+     ++. |+-.+ .+-.+.+++..+..+.-+       .+......+...+.
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~-----~vsaG~iFR-~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~n   75 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLK-----LVSAGTIFR-EMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGN   75 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCc-----eeeccHHHH-HHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCC
Confidence            57899999999999999999999654     444 33222 111222444433321100       01111111222233


Q ss_pred             chhcccCChHHHHHHHHHHhC-CCCCccEEEEeCCccchhccChhh----HH---HHH--h----CCCCCCCccccCcCC
Q 023675          176 ICIACLISPYRKDRDACRSML-PEGDFIEVFMDVPLQVCEARDPKG----LY---KLA--R----EGKVKGFTGIDDPYE  241 (279)
Q Consensus       176 ~~i~~~~~~~~~~r~~ar~l~-~~~~~i~i~ld~p~~~l~~R~~~~----l~---~~~--~----~~~~~~~~~~r~~~~  241 (279)
                      .++-.-+.+         -++ ..+++ -|||.+|++...+|..++    +-   +..  +    ..++..+++++-.=.
T Consensus        76 vVlegrLA~---------Wi~k~~adl-kI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDl  145 (179)
T COG1102          76 VVLEGRLAG---------WIVREYADL-KIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDL  145 (179)
T ss_pred             eEEhhhhHH---------HHhccccce-EEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            332221211         111 22344 499999999999998654    11   110  1    122334555543322


Q ss_pred             CCCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          242 PPLNCEIVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       242 ~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      .  -.|++|+|   +..+++++...|...+..
T Consensus       146 S--iyDLVinT---s~~~~~~v~~il~~aid~  172 (179)
T COG1102         146 S--IYDLVINT---SKWDPEEVFLILLDAIDA  172 (179)
T ss_pred             e--eeEEEEec---ccCCHHHHHHHHHHHHHh
Confidence            2  25689999   899998888777776654

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.55  E-value=3.1e-08  Score=95.08  Aligned_cols=147  Identities=17%  Similarity=0.209  Sum_probs=82.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHH-HHHHHHHHHhCC--c
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRR-IGEVAKLFADAG--V  175 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~-v~~~~~~~~~~~--~  175 (279)
                      .++|+|++||||||+++.|++.+..+     ++|.|.+.+...   +.+..+.     ..+++. -.+....+....  +
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~-----~id~D~~i~~~~---g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~V   73 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQ-----FIDMDEEIERRE---GRSVRRIFEEDGEEYFRLKEKELLRELVERDNVV   73 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCe-----EEECcHHHHHHc---CCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEE
Confidence            48999999999999999999988554     889887643221   2111111     111111 111111121211  2


Q ss_pred             chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh---HHHHHhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675          176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG---LYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQ  252 (279)
Q Consensus       176 ~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~---l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~  252 (279)
                      +..+........+|+.++.    ..  .+||+.|.+.+.+|+..+   +.... ..++..++..|.++|...   .+||+
T Consensus        74 is~Gggvv~~~~~r~~l~~----~~--vI~L~as~e~l~~Rl~~~~RPLl~~~-~e~l~~L~~~R~~lY~~~---~~IDt  143 (488)
T PRK13951         74 VATGGGVVIDPENRELLKK----EK--TLFLYAPPEVLMERVTTENRPLLREG-KERIREIWERRKQFYTEF---RGIDT  143 (488)
T ss_pred             EECCCccccChHHHHHHhc----Ce--EEEEECCHHHHHHHhccCCCCCcccc-HHHHHHHHHHHHHHHhcc---cEEEC
Confidence            2222222233445554442    22  389999999999998532   11100 012333455577777642   47888


Q ss_pred             cCCCCCCHHHHHHHHH-HHH
Q 023675          253 MGDDCPSPADMVETVV-SYL  271 (279)
Q Consensus       253 ~~~~~~~~~e~~~~Il-~~l  271 (279)
                         +..++++.+++|+ ++|
T Consensus       144 ---~~~s~~e~~~~iv~~~~  160 (488)
T PRK13951        144 ---SKLNEWETTALVVLEAL  160 (488)
T ss_pred             ---CCCCHHHHHHHHHHHhh
Confidence               7788888777765 444

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.54  E-value=1.2e-06  Score=88.15  Aligned_cols=71  Identities=7%  Similarity=0.099  Sum_probs=43.0

Q ss_pred             CCCCccEEEEeCCccchhccChhhH--------HHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCCHHHHHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGL--------YKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVV  268 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l--------~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il  268 (279)
                      .++++ -+||+++.+..++|-.+++        ++.+...+..+. ..-.|+.... .-+.||+   +.++++++++.|+
T Consensus       153 p~a~~-K~~l~A~~~~Ra~Rr~~~~~~~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~-da~~idt---s~~~~~~v~~~i~  226 (712)
T PRK09518        153 PDAEV-RILLTAREEVRQARRSGQDRSETPGVVLEDVAARDEADS-KVTSFLSAAD-GVTTLDN---SDLDFDETLDLLI  226 (712)
T ss_pred             cCCCe-EEEEECCHHHHHHHHHHhhhcCCHHHHHHHHHHHhhhcc-cccCCCCCCC-CeEEEEC---CCCCHHHHHHHHH
Confidence            33444 4899999998888764432        122222222222 2223333321 2288999   9999999999999


Q ss_pred             HHHHh
Q 023675          269 SYLDE  273 (279)
Q Consensus       269 ~~l~~  273 (279)
                      ..+++
T Consensus       227 ~~i~~  231 (712)
T PRK09518        227 GLVED  231 (712)
T ss_pred             HHHHh
Confidence            88764

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.53  E-value=9.4e-08  Score=92.10  Aligned_cols=102  Identities=14%  Similarity=0.090  Sum_probs=72.6

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcch
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC  177 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  177 (279)
                      .-.+++++.++|++||||||+++.+...+     |.++++-|.+.               . +......+......|..+
T Consensus       365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~-----g~~~vn~D~lg---------------~-~~~~~~~a~~~L~~G~sV  423 (526)
T TIGR01663       365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPA-----GYKHVNADTLG---------------S-TQNCLTACERALDQGKRC  423 (526)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHc-----CCeEECcHHHH---------------H-HHHHHHHHHHHHhCCCcE
Confidence            44678999999999999999999988754     45678877653               0 111222233334567778


Q ss_pred             hcccCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhccChhh
Q 023675          178 IACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       178 i~~~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      +++........|....++++..  ++..++++.|.+.+.+|+..+
T Consensus       424 VIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R  468 (526)
T TIGR01663       424 AIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR  468 (526)
T ss_pred             EEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence            8888877777776666665543  556689999999999988655

Note that the EC number for the kinase function is: 2.7.1.78

>PRK14527 adenylate kinase; Provisional

Probab=98.52  E-value=2.8e-07  Score=77.69  Aligned_cols=29  Identities=41%  Similarity=0.468  Sum_probs=26.2

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ..+|.+++++|++||||||+++.|+..+.
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999999998774

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.52  E-value=1.3e-07  Score=80.45  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             cceeccCC-eEEEEEcCCCChHHHHHHHHH
Q 023675           95 QQLLQQKG-CVIWITGLSGSGKSTLACALS  123 (279)
Q Consensus        95 ~sl~i~~g-~~i~lvG~sGsGKSTl~~~L~  123 (279)
                      .++++.+| ++++|+|||||||||+++.|.
T Consensus        20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          20 LDIQLGENKRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             ceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence            37888898 589999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.52  E-value=1.3e-06  Score=74.26  Aligned_cols=122  Identities=19%  Similarity=0.180  Sum_probs=65.8

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe---e-cccc-----cc---cCCCCCcccH-HHHHH
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD---N-CRHG-----LN---RDLSFKAEDR-VENIR  161 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd---~-i~~~-----~~---~~~~~~~~~~-~~~~~  161 (279)
                      ..+.+.+| +.+|+|+||||||||+.+|.-.+. .... ....+.   + ++.+     +.   ..-+...... .....
T Consensus        15 ~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   91 (198)
T cd03276          15 LQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-GKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQD   91 (198)
T ss_pred             eEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-CCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHH
Confidence            45566665 778999999999999999986542 1110 001111   1 0100     00   0001111000 00001


Q ss_pred             HHHHHHHHHHhC-CcchhcccCChHHHHH-HHHHHh----CCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          162 RIGEVAKLFADA-GVICIACLISPYRKDR-DACRSM----LPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       162 ~v~~~~~~~~~~-~~~~i~~~~~~~~~~r-~~ar~l----~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      .   +..++... ........++.+++++ .+++++    +.+|++  +++|||+..++......+.+.
T Consensus        92 ~---~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~i--lllDEP~~glD~~~~~~~~~~  155 (198)
T cd03276          92 M---ARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPF--RCLDEFDVFMDMVNRKISTDL  155 (198)
T ss_pred             H---HHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCE--EEecCcccccCHHHHHHHHHH
Confidence            1   11111111 1222345677888887 777777    578888  999999999998876665543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.50  E-value=1.6e-07  Score=78.31  Aligned_cols=110  Identities=18%  Similarity=0.171  Sum_probs=57.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC-eecccccccCCCCCcccHHHHH--------HHHHHH-HHHHHhC
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGLNRDLSFKAEDRVENI--------RRIGEV-AKLFADA  173 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg-d~i~~~~~~~~~~~~~~~~~~~--------~~v~~~-~~~~~~~  173 (279)
                      +|+|+|++||||||+++.|+..++     .++++. +-+++.+.....+. ......+        ..+.++ ...+...
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~-----~~~is~~d~lr~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~ll~~~~~~~   74 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG-----FTHLSAGDLLRAEIKSGSENG-ELIESMIKNGKIVPSEVTVKLLKNAIQAD   74 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC-----CeEEECChHHHHHHhcCChHH-HHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence            478999999999999999999884     447775 44443322100000 0000000        000011 1111111


Q ss_pred             -CcchhcccCChHHHHHHHHHHhCC---CCCccEEEEeCCccchhccChhh
Q 023675          174 -GVICIACLISPYRKDRDACRSMLP---EGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       174 -~~~~i~~~~~~~~~~r~~ar~l~~---~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                       +...++++......++..+..++.   .+++ .++|+.|.+.+.+|+.++
T Consensus        75 ~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~-~i~l~~~~~~~~~Rl~~R  124 (183)
T TIGR01359        75 GSKKFLIDGFPRNEENLEAWEKLMDNKVNFKF-VLFFDCPEEVMIKRLLKR  124 (183)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCE-EEEEECCHHHHHHHHhcC
Confidence             222344443333344444444432   3454 489999999998887543

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK13975 thymidylate kinase; Provisional

Probab=98.50  E-value=5.3e-07  Score=76.02  Aligned_cols=26  Identities=38%  Similarity=0.525  Sum_probs=24.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      |.+|+|.|++||||||+++.|+..+.
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            57899999999999999999999984

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.49  E-value=1.1e-07  Score=80.86  Aligned_cols=30  Identities=30%  Similarity=0.349  Sum_probs=27.1

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ++.+.+|++++|+|+|||||||+++.|++.
T Consensus        23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          23 DINLGSGRLLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             eEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence            667778899999999999999999999954

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK01184 hypothetical protein; Provisional

Probab=98.47  E-value=1.2e-06  Score=73.14  Aligned_cols=152  Identities=17%  Similarity=0.223  Sum_probs=75.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEc-Ceecccccc-cCCCCCcccHHH----HHHH-----HHHHH--HHH
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLN-RDLSFKAEDRVE----NIRR-----IGEVA--KLF  170 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld-gd~i~~~~~-~~~~~~~~~~~~----~~~~-----v~~~~--~~~  170 (279)
                      +|+|+|++||||||+++ ++..++.+     +++ ||.+++.+. ..+.........    .+..     +...+  .+.
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~~~~g~~-----~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~   76 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IAREMGIP-----VVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIR   76 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHcCCc-----EEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence            78999999999999988 45555333     566 555654331 111111111110    0101     00111  111


Q ss_pred             HhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCC---CCCCCccc--------cCc
Q 023675          171 ADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREG---KVKGFTGI--------DDP  239 (279)
Q Consensus       171 ~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~---~~~~~~~~--------r~~  239 (279)
                      ...+..++++... ...+.+.+++.+.. .+..|++++|.+.+.+|+..+-    +..   ....+...        ...
T Consensus        77 ~~~~~~vvidg~r-~~~e~~~~~~~~~~-~~~~i~v~~~~~~~~~Rl~~R~----~~~d~~~~~~~~~r~~~q~~~~~~~  150 (184)
T PRK01184         77 EKGDEVVVIDGVR-GDAEVEYFRKEFPE-DFILIAIHAPPEVRFERLKKRG----RSDDPKSWEELEERDERELSWGIGE  150 (184)
T ss_pred             hcCCCcEEEeCCC-CHHHHHHHHHhCCc-ccEEEEEECCHHHHHHHHHHcC----CCCChhhHHHHHHHHHHHhccCHHH
Confidence            1112333444332 33445556666653 3556999999999999875321    000   00001000        111


Q ss_pred             CCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          240 YEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       240 ~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      ++.  .++++|+.    +.+++++..++.+.++.
T Consensus       151 ~~~--~ad~vI~N----~~~~~~l~~~v~~~~~~  178 (184)
T PRK01184        151 VIA--LADYMIVN----DSTLEEFRARVRKLLER  178 (184)
T ss_pred             HHH--hcCEEEeC----CCCHHHHHHHHHHHHHH
Confidence            222  37788875    34788888887776653

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.46  E-value=5.6e-07  Score=80.07  Aligned_cols=39  Identities=26%  Similarity=0.215  Sum_probs=36.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      ..++|+|++||||||+++.|++.+ .+++|.+.++|.++.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~-~~~~G~i~~~g~~v~  150 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARIL-STGISQLGLRGKKVG  150 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCcc-CCCCceEEECCEEee
Confidence            678999999999999999999999 899999999999885

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PLN02200 adenylate kinase family protein

Probab=98.42  E-value=1.5e-06  Score=75.82  Aligned_cols=166  Identities=13%  Similarity=0.163  Sum_probs=82.2

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-cccccccCCC-------------CCcccHHHHHH
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDLS-------------FKAEDRVENIR  161 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i~~~~~~~~~-------------~~~~~~~~~~~  161 (279)
                      ++...++.+++|+|++||||||+++.|+..++.     .++...+ +++.+...-.             ..+.+  ....
T Consensus        37 ~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~-----~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e--~~~~  109 (234)
T PLN02200         37 SSKEKTPFITFVLGGPGSGKGTQCEKIVETFGF-----KHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSE--VTVK  109 (234)
T ss_pred             CccCCCCEEEEEECCCCCCHHHHHHHHHHHhCC-----eEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHH--HHHH
Confidence            444566789999999999999999999998843     3666544 3432211000             00000  0001


Q ss_pred             HHHHHHHHHHhC-CcchhcccCChHHHHHHHHHHhCC-CCCccEEEEeCCccchhccChhhHHHHHhC------CCCCCC
Q 023675          162 RIGEVAKLFADA-GVICIACLISPYRKDRDACRSMLP-EGDFIEVFMDVPLQVCEARDPKGLYKLARE------GKVKGF  233 (279)
Q Consensus       162 ~v~~~~~~~~~~-~~~~i~~~~~~~~~~r~~ar~l~~-~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~------~~~~~~  233 (279)
                      .+.   ..+... ....++++......++.....++. .+++ .++|++|.+.+.+|+.++-..+...      .++..+
T Consensus       110 ~l~---~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~-vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y  185 (234)
T PLN02200        110 LIQ---KEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNV-VLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVF  185 (234)
T ss_pred             HHH---HHHhcCCCCeEEecCCcccHHHHHHHHHHhccCCCE-EEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHH
Confidence            111   111111 111234443333344443444433 3444 4899999999988875431000000      000011


Q ss_pred             cccc---CcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCC
Q 023675          234 TGID---DPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGF  276 (279)
Q Consensus       234 ~~~r---~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~  276 (279)
                      ....   ..||....--+.||    +..+++++.+.|.+.+.....
T Consensus       186 ~~~~~pv~~~y~~~~~~~~ID----a~~~~eeV~~~v~~~l~~~~~  227 (234)
T PLN02200        186 NALNLPVIDYYSKKGKLYTIN----AVGTVDEIFEQVRPIFAACEA  227 (234)
T ss_pred             HHHHHHHHHHHHhcCCEEEEE----CCCCHHHHHHHHHHHHHHcCC
Confidence            1111   11222111123444    467999999999998876543

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.41  E-value=6.2e-07  Score=76.31  Aligned_cols=31  Identities=32%  Similarity=0.305  Sum_probs=27.3

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ++.+..|++++|+|||||||||+++.|++..
T Consensus        19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             eEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            4566668999999999999999999999865

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.40  E-value=2.3e-06  Score=87.86  Aligned_cols=42  Identities=26%  Similarity=0.253  Sum_probs=35.3

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHH
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL  122 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L  122 (279)
                      .++++++...-..+.++++++|++++|+|+||||||||++.+
T Consensus       614 ~L~v~~l~~~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~  655 (943)
T PRK00349        614 FLKLKGARENNLKNVDVEIPLGKFTCVTGVSGSGKSTLINET  655 (943)
T ss_pred             eEEecCCccCCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence            467777764445567999999999999999999999999875

>PRK06217 hypothetical protein; Validated

Probab=98.38  E-value=1.4e-06  Score=72.94  Aligned_cols=34  Identities=47%  Similarity=0.576  Sum_probs=29.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      .|+|+|.|||||||+++.|+..++.+     +++.|++.
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~-----~~~~D~~~   36 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIP-----HLDTDDYF   36 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCc-----EEEcCcee
Confidence            58999999999999999999998654     77877764

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.37  E-value=3.6e-07  Score=76.80  Aligned_cols=43  Identities=28%  Similarity=0.246  Sum_probs=38.4

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd  139 (279)
                      .+.+++|+.++|+|++||||||++++|.+++ .++.|.+.+++.
T Consensus        19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i-~~~~~~i~ied~   61 (186)
T cd01130          19 WLAVEARKNILISGGTGSGKTTLLNALLAFI-PPDERIITIEDT   61 (186)
T ss_pred             HHHHhCCCEEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEECCc
Confidence            4577889999999999999999999999999 688899988653

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.37  E-value=4.6e-06  Score=69.32  Aligned_cols=25  Identities=52%  Similarity=0.583  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      |++++|+|||||||||+++.|++.+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccC
Confidence            6899999999999999999999986

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.36  E-value=6.5e-07  Score=76.93  Aligned_cols=45  Identities=11%  Similarity=-0.045  Sum_probs=32.7

Q ss_pred             ccCChHHHHH-HHHHHhCC----CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          180 CLISPYRKDR-DACRSMLP----EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       180 ~~~~~~~~~r-~~ar~l~~----~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ...+.++++| .++++++.    .|++  +++|||+..++......+.+.++
T Consensus       126 ~~lS~G~~~r~~la~al~~~~~~~p~i--lilDEPt~gLD~~~~~~l~~~l~  175 (212)
T cd03274         126 SNLSGGEKTLSSLALVFALHHYKPTPL--YVMDEIDAALDFRNVSIVANYIK  175 (212)
T ss_pred             hhcCHHHHHHHHHHHHHHhcccCCCCE--EEEcCCCcCCCHHHHHHHHHHHH
Confidence            3467777777 78887752    3577  89999999998877766555444

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=98.35  E-value=7.2e-07  Score=75.31  Aligned_cols=62  Identities=21%  Similarity=0.143  Sum_probs=53.3

Q ss_pred             CCCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           79 STNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ...|++.+..|+|....      |+.++.|....+||.||||||||+++|+|.. -.+.|.|.+.|.+.
T Consensus        11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh-mv~~~~v~Vlgrsa   78 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH-MVGGGVVQVLGRSA   78 (291)
T ss_pred             cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc-cccCCeEEEcCcCc
Confidence            45689999999997432      7899999999999999999999999999997 56668998888764

>PRK14530 adenylate kinase; Provisional

Probab=98.32  E-value=2.4e-06  Score=73.39  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +..|+|+|++||||||+++.|++.++.+     +++..++
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~-----~i~~g~~   37 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFGVE-----HVTTGDA   37 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEeccHH
Confidence            4579999999999999999999998533     5654443

>PRK08118 topology modulation protein; Reviewed

Probab=98.31  E-value=1.2e-06  Score=72.56  Aligned_cols=99  Identities=27%  Similarity=0.269  Sum_probs=53.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCC
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS  183 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~  183 (279)
                      .|.|+|++||||||+++.|+..++.+     +++-|.+.-.    .++......+....+.   .+....+.  ++.+..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~-----~~~lD~l~~~----~~w~~~~~~~~~~~~~---~~~~~~~w--VidG~~   68 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIP-----VHHLDALFWK----PNWEGVPKEEQITVQN---ELVKEDEW--IIDGNY   68 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC-----ceecchhhcc----cCCcCCCHHHHHHHHH---HHhcCCCE--EEeCCc
Confidence            58999999999999999999998655     4555544210    0111112212211211   12222222  222211


Q ss_pred             hHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675          184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (279)
Q Consensus       184 ~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~  222 (279)
                      +.  ..+..   +..++.+ |+||.|.+.+..|..++-.
T Consensus        69 ~~--~~~~~---l~~~d~v-i~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         69 GG--TMDIR---LNAADTI-IFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             ch--HHHHH---HHhCCEE-EEEeCCHHHHHHHHHHHHH
Confidence            11  11111   1223443 9999999999999876643

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.31  E-value=3.3e-07  Score=82.67  Aligned_cols=48  Identities=10%  Similarity=0.126  Sum_probs=45.5

Q ss_pred             CcccCCCcceeeeeeccccc--CccccccCccccccccccccchhhhhhhhcccccccccc
Q 023675           14 PAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQ   72 (279)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~   72 (279)
                      .+|.+||||+|.|+++.|++  +|.+|+.+|+|+.||+.+|.           |+|+||+.
T Consensus       364 ~~l~lN~Ig~v~i~~~~pi~fd~Y~~N~atG~FIlID~~tn~-----------TVgaGmI~  413 (431)
T COG2895         364 ESLPLNEIGRVRISFDKPIAFDAYAENRATGSFILIDRLTNG-----------TVGAGMIL  413 (431)
T ss_pred             cccCCCcceEEEEecCCceeecccccCcccccEEEEEcCCCC-----------ceeceeee
Confidence            45999999999999999999  99999999999999999999           89999986

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.31  E-value=1.1e-05  Score=69.09  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=24.0

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .+|.+++|+||||||||||++.|....
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            468999999999999999999998653

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.30  E-value=9.4e-07  Score=78.64  Aligned_cols=111  Identities=25%  Similarity=0.346  Sum_probs=57.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc-cHHHHHHHH-HHHHHHHHhCCcchhccc
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-DRVENIRRI-GEVAKLFADAGVICIACL  181 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~-~~~~~~~~v-~~~~~~~~~~~~~~i~~~  181 (279)
                      +|.|+|.|||||||+++.|...+...+.-.++++.+.+.  +.... |... .....+..+ ..+...+ ....+++++.
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~~-y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd   78 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRND-YADSKKEKEARGSLKSAVERAL-SKDTIVILDD   78 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTSS-S--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchhh-hhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeC
Confidence            689999999999999999999986665566677766654  11111 3222 222222222 2233333 3345666665


Q ss_pred             CChHHHHH----HHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675          182 ISPYRKDR----DACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       182 ~~~~~~~r----~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      ..-....|    .++|+.-.  .+..|++++|.+.+.+|..++
T Consensus        79 ~nYiKg~RYelyclAr~~~~--~~c~i~~~~~~e~~~~~N~~R  119 (270)
T PF08433_consen   79 NNYIKGMRYELYCLARAYGT--TFCVIYCDCPLETCLQRNSKR  119 (270)
T ss_dssp             ---SHHHHHHHHHHHHHTT---EEEEEEEE--HHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHHcCC--CEEEEEECCCHHHHHHhhhcc
Confidence            44333333    33343222  466799999999999987543

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.30  E-value=7.2e-07  Score=75.53  Aligned_cols=43  Identities=30%  Similarity=0.333  Sum_probs=38.7

Q ss_pred             eecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675           85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        85 ~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .++.+...++.|+++..|++-+|||.||||||-+++++.+...
T Consensus        16 sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k   58 (330)
T COG4170          16 SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK   58 (330)
T ss_pred             CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc
Confidence            3456778889999999999999999999999999999999863

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.30  E-value=5.8e-06  Score=84.78  Aligned_cols=41  Identities=29%  Similarity=0.287  Sum_probs=35.7

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHH
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACA  121 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~  121 (279)
                      .+++++++..-..+.++.+++|++++|+|+||||||||++-
T Consensus       612 ~l~l~~~~~~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~  652 (924)
T TIGR00630       612 FLTLKGARENNLKNITVSIPLGLFTCITGVSGSGKSTLIND  652 (924)
T ss_pred             eEEEEeCccCCcCceEEEEeCCCEEEEECCCCCCHHHHHHH
Confidence            47888877655667799999999999999999999999983

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.30  E-value=2.9e-06  Score=84.73  Aligned_cols=37  Identities=35%  Similarity=0.462  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      +..++++.||+||||||+++.|++.|+.+     ++|.+.+.
T Consensus       441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~-----~~~~~~~~  477 (661)
T PRK11860        441 RVPVICIDGPTASGKGTVAARVAEALGYH-----YLDSGALY  477 (661)
T ss_pred             CcceEEeeCCCCCCHHHHHHHHHHHhCCe-----EecHHHhh
Confidence            34589999999999999999999999655     78877653

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.28  E-value=5.3e-06  Score=89.39  Aligned_cols=40  Identities=28%  Similarity=0.344  Sum_probs=35.2

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHH
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLAC  120 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~  120 (279)
                      .++++++...-..+.++++++|++++|+|+||||||||++
T Consensus       600 ~L~l~~~~~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~  639 (1809)
T PRK00635        600 TLTLSKATKHNLKDLTISLPLGRLTVVTGVSGSGKSSLIN  639 (1809)
T ss_pred             eEEEeccccCCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence            4778877665566779999999999999999999999999

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=98.28  E-value=8.3e-07  Score=82.58  Aligned_cols=160  Identities=21%  Similarity=0.221  Sum_probs=78.8

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHH-HHHHHHHHHHHHhCCcchh
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN-IRRIGEVAKLFADAGVICI  178 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~i  178 (279)
                      ..|.+++|+|+||||||||+..|.+.|. ...-...+..      ......++.++...+ +++....+..+...+..++
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~-~~~~V~~ik~------~~~~~~~d~~~~d~~~~~~aga~~~~~~~~~~~~~   75 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLS-ERFSVGYYKH------GCHRFDIDREGKDSDLARKAGASTVMISDPEKHAL   75 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHh-hCceEEEEEe------CCCCCCCCcccchHHHHHhccCcEEEEecCCEEEE
Confidence            4688999999999999999999999984 3221222221      001123333333222 1111111111222233333


Q ss_pred             cccCChHHHHHHHHHHhCCCCCc--cEEEEeCCcc--chhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEE-cc
Q 023675          179 ACLISPYRKDRDACRSMLPEGDF--IEVFMDVPLQ--VCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLK-QM  253 (279)
Q Consensus       179 ~~~~~~~~~~r~~ar~l~~~~~~--i~i~ld~p~~--~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~-~~  253 (279)
                      ......   .+...+..+.+.++  ++.|-+++..  .+.+|..+.+ .....++..++..+-.++.++..++..+. . 
T Consensus        76 ~~~~~~---~~~~~~~~~~~~D~vlvEG~k~~~~pki~~~~~~~~~~-~~~~~~~~~~v~av~~~~~~~~~~~~~~p~~-  150 (369)
T PRK14490         76 IAGGPP---DPLLERGAFLDCDLLLVEGLKELPLPKILLVDRERKIL-DLLEQGSVTNVVALVVPDDPASYPDFGLPVF-  150 (369)
T ss_pred             EEeCCC---ChHHHHhccCCCCEEEECCCCCCCCCeEEEEeCCCCcc-cccccCCCCCEEEEEECCcccccccCCCccc-
Confidence            332222   22333333334453  3446677766  5555543322 22333455566666554443311122222 2 


Q ss_pred             CCCCCCHHHHHHHHHHHHHh
Q 023675          254 GDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       254 ~~~~~~~~e~~~~Il~~l~~  273 (279)
                        +..+++++++.|++++..
T Consensus       151 --~~~~~~~~~~~i~~~~~~  168 (369)
T PRK14490        151 --HRDDIAAIADFIEGHLLG  168 (369)
T ss_pred             --CcccHHHHHHHHHHHHhc
Confidence              335788999999988865

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=6.1e-06  Score=77.96  Aligned_cols=138  Identities=17%  Similarity=0.160  Sum_probs=91.5

Q ss_pred             CCCeEEeecceeecCCc-------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCC
Q 023675           79 STNILWHKNSVDKRDRQ-------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF  151 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~~-------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~  151 (279)
                      .+++.+.++.|.|....       ++..+.-..+.++|++|+||||+.+++.+.+ .|.+|.+.+.+.--       +++
T Consensus       360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l-~~~rgi~~~~~r~r-------i~~  431 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDL-TPTRGIVGRHPRLR-------IKY  431 (582)
T ss_pred             CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccC-Ccccceeeecccce-------ecc
Confidence            46788999999886544       5667777889999999999999999999999 88888887776421       122


Q ss_pred             CcccHHHHHHH----HH------------HHHHHHHhCCcch---h--cccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675          152 KAEDRVENIRR----IG------------EVAKLFADAGVIC---I--ACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (279)
Q Consensus       152 ~~~~~~~~~~~----v~------------~~~~~~~~~~~~~---i--~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p  209 (279)
                      ..+....++..    +.            ++-.-+...|+..   .  +..+|++|+.| ..|.....+|.+  +.||||
T Consensus       432 f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Phl--LVLDEP  509 (582)
T KOG0062|consen  432 FAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHL--LVLDEP  509 (582)
T ss_pred             hhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcE--EEecCC
Confidence            22211111111    00            0111112222221   1  34588899988 777777888888  999999


Q ss_pred             ccchhccChhhHHHHHh
Q 023675          210 LQVCEARDPKGLYKLAR  226 (279)
Q Consensus       210 ~~~l~~R~~~~l~~~~~  226 (279)
                      ++.|+.---..|...++
T Consensus       510 TNhLD~dsl~AL~~Al~  526 (582)
T KOG0062|consen  510 TNHLDRDSLGALAKALK  526 (582)
T ss_pred             CccccHHHHHHHHHHHH
Confidence            99998766555555444

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.27  E-value=7.2e-06  Score=71.13  Aligned_cols=27  Identities=44%  Similarity=0.582  Sum_probs=24.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHW  128 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~  128 (279)
                      ..+|+|.|++||||||+++.|++.++.
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~   30 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGF   30 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            468999999999999999999998853

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.26  E-value=2e-06  Score=70.60  Aligned_cols=103  Identities=21%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCC-CcccHHHHHHHHHHHHHHHHhCC
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF-KAEDRVENIRRIGEVAKLFADAG  174 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  174 (279)
                      +.....+.++.|+|||||||||+++.+.-.+. ..++.+.- .++...      ++ .+.....                
T Consensus        15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~-~~~~~~~~-~~~~~~------g~~~~~~~~~----------------   70 (162)
T cd03227          15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALG-GAQSATRR-RSGVKA------GCIVAAVSAE----------------   70 (162)
T ss_pred             EEecCCCCEEEEECCCCCCHHHHHHHHHHHHH-hcchhhhc-cCcccC------CCcceeeEEE----------------
Confidence            44555567999999999999999999877663 22222221 111110      10 0000000                


Q ss_pred             cchhcccCChHHHHH-HHHHHhCC----CCCccEEEEeCCccchhccChhhHHHH
Q 023675          175 VICIACLISPYRKDR-DACRSMLP----EGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       175 ~~~i~~~~~~~~~~r-~~ar~l~~----~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++.....++.+++++ .+++.+..    .+++  +++|||...++......+...
T Consensus        71 ~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~l--lllDEp~~gld~~~~~~l~~~  123 (162)
T cd03227          71 LIFTRLQLSGGEKELSALALILALASLKPRPL--YILDEIDRGLDPRDGQALAEA  123 (162)
T ss_pred             EehheeeccccHHHHHHHHHHHHhcCCCCCCE--EEEeCCCCCCCHHHHHHHHHH
Confidence            011112255566666 66777654    4567  999999999999877665543

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.25  E-value=2.8e-06  Score=71.97  Aligned_cols=34  Identities=35%  Similarity=0.495  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEE
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTY  134 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i  134 (279)
                      +|.+|+|.|++||||||+++.|+..+...+.+.+
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~   35 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVV   35 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCcee
Confidence            4789999999999999999999998744333333

>PRK07261 topology modulation protein; Provisional

Probab=98.25  E-value=2.2e-06  Score=71.12  Aligned_cols=98  Identities=28%  Similarity=0.275  Sum_probs=53.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCC
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS  183 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~  183 (279)
                      .|+|+|+||||||||++.|++.++.+     .++.|.+...    .++......+....+.   ..+....  .++++..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~-----~i~~D~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~--wIidg~~   67 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCP-----VLHLDTLHFQ----PNWQERDDDDMIADIS---NFLLKHD--WIIDGNY   67 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCC-----eEecCCEEec----cccccCCHHHHHHHHH---HHHhCCC--EEEcCcc
Confidence            58999999999999999999988544     4444444211    0222223333333332   2233322  2333322


Q ss_pred             hHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675          184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       184 ~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      ........+.    .++. .++||.|...|..|..++
T Consensus        68 ~~~~~~~~l~----~ad~-vI~Ld~p~~~~~~R~lkR   99 (171)
T PRK07261         68 SWCLYEERMQ----EADQ-IIFLNFSRFNCLYRAFKR   99 (171)
T ss_pred             hhhhHHHHHH----HCCE-EEEEcCCHHHHHHHHHHH
Confidence            1111111111    1233 399999999999988665

>PRK13808 adenylate kinase; Provisional

Probab=98.24  E-value=2.7e-06  Score=77.57  Aligned_cols=32  Identities=28%  Similarity=0.297  Sum_probs=26.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      .|+|+|++||||||+++.|+..|+.     ++++..+
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl-----~~is~gd   33 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGI-----VQLSTGD   33 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-----ceecccH
Confidence            3789999999999999999999853     3677444

>PRK06761 hypothetical protein; Provisional

Probab=98.24  E-value=5.2e-06  Score=74.14  Aligned_cols=118  Identities=17%  Similarity=0.186  Sum_probs=72.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCc-cEEEEcCeec-ccccccCCCCCcccHHHHHHHHHHHHHHHHh----CCc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGK-LTYILDGDNC-RHGLNRDLSFKAEDRVENIRRIGEVAKLFAD----AGV  175 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~-G~i~ldgd~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~  175 (279)
                      +.+++|.|++||||||+++.|+..+...+- -.++.+++.- ...+.....++..++..+++.....+..+..    .+.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~   82 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD   82 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence            468999999999999999999999843221 1123455432 2223334567777887777776665554443    333


Q ss_pred             chhcccCChHHHHHHHHHH-hCCCCCccEEEEeCCccchhccChhh
Q 023675          176 ICIACLISPYRKDRDACRS-MLPEGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       176 ~~i~~~~~~~~~~r~~ar~-l~~~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      .++..+.......|+..+. ++.......++ ..|.+.+.+|..++
T Consensus        83 ~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~r  127 (282)
T PRK06761         83 YYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDR  127 (282)
T ss_pred             eEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHH
Confidence            4455555555556655553 22222233355 88888888887554

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.24  E-value=1.2e-06  Score=73.41  Aligned_cols=24  Identities=38%  Similarity=0.603  Sum_probs=22.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccc
Q 023675          104 VIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +|+|.|++||||||+++.|++.+.
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~   25 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLE   25 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999984

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>TIGR00235 udk uridine kinase

Probab=98.22  E-value=1.1e-06  Score=74.99  Aligned_cols=29  Identities=45%  Similarity=0.571  Sum_probs=26.7

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      -++|++++|+|+||||||||++.|.+.+.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            36799999999999999999999999984

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.20  E-value=1.2e-05  Score=69.18  Aligned_cols=44  Identities=11%  Similarity=0.052  Sum_probs=31.4

Q ss_pred             ccCChHHHHHHHHHH-----hCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          180 CLISPYRKDRDACRS-----MLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       180 ~~~~~~~~~r~~ar~-----l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ..++.+++++..+..     ++.+|++  +++|||+..++....+.+++.+
T Consensus       125 ~~LS~G~~q~~~i~~~la~~~~~~p~l--lllDEP~~~LD~~~~~~i~~~l  173 (213)
T cd03277         125 HHQSGGERSVSTMLYLLSLQELTRCPF--RVVDEINQGMDPTNERKVFDML  173 (213)
T ss_pred             hhccccHHHHHHHHHHHHHHhccCCCE--EEEecccccCCHHHHHHHHHHH
Confidence            456777777743332     2567777  9999999999988877655543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4639 Predicted kinase [General function prediction only]

Probab=98.19  E-value=1.9e-06  Score=69.46  Aligned_cols=109  Identities=22%  Similarity=0.198  Sum_probs=63.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc--cCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC  180 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~  180 (279)
                      ..++|+|++||||||+++..-.-  .+     .++-++++..+.  .....+........+.+.+....-...|-+.+.+
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n~~~--~~-----~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiid   75 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKENFLQ--NY-----VLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIID   75 (168)
T ss_pred             eEEEEecCCCCchhHHHHHhCCC--cc-----eecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence            47899999999999999953222  11     455555543221  0000011111111222222222223457777877


Q ss_pred             cCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhccCh
Q 023675          181 LISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       181 ~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~  218 (279)
                      ......++|.....++...  ..+.|++|.|.+.|..|.+
T Consensus        76 Atn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk  115 (168)
T COG4639          76 ATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNK  115 (168)
T ss_pred             cccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhh
Confidence            7777777777677666654  2345899999999999974

>PRK14531 adenylate kinase; Provisional

Probab=98.18  E-value=3.4e-06  Score=70.67  Aligned_cols=35  Identities=34%  Similarity=0.347  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC-eecc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCR  142 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg-d~i~  142 (279)
                      ..++++|++||||||+++.|+..++.+     +++. +-++
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~-----~is~gd~lr   38 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLR-----HLSTGDLLR   38 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCC-----eEecccHHH
Confidence            368999999999999999999988533     6664 3344

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.16  E-value=5.1e-06  Score=76.08  Aligned_cols=111  Identities=21%  Similarity=0.144  Sum_probs=60.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCeeccc-cc-ccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhccc
Q 023675          105 IWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH-GL-NRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACL  181 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd~i~~-~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~  181 (279)
                      .+|+|++||||||+++.|+..+. ..+....+++.|++-. .. ....+.+..+..+.++  ..+...+. ..+.+++.+
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R--~~i~~~le-~~v~a~~~g   78 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFR--QELLKYLE-HFLVAVING   78 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHH--HHHHHHHH-HHHHHhcCc
Confidence            67999999999999999998884 3566677899998641 11 1111111122222222  12233222 233333322


Q ss_pred             --CCh--H--HHHHHHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675          182 --ISP--Y--RKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK  219 (279)
Q Consensus       182 --~~~--~--~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~  219 (279)
                        .++  +  +..+...+..+.+.. +.|+++.+.+.+..|+.+
T Consensus        79 ~~~~~~~~~~~~~~~~nv~~L~~~g-~vv~L~as~e~~~~rLi~  121 (340)
T TIGR03575        79 SELSAPPGKTEGMWEDFVDCLKEQG-LIISSGASEAQGCHSLTK  121 (340)
T ss_pred             ccccCCcccchhhhHHHHHHHHhCC-eEEEcCCcHHHHHHHHhH
Confidence              111  0  122323334444433 348999998888877743

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.15  E-value=6.7e-05  Score=63.15  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +|.+++|+||||||||||++.|...+
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            67899999999999999999998876

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.12  E-value=8e-06  Score=68.49  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=26.8

Q ss_pred             EEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      |+|+|++||||||+++.|+..++     ..+++.+++
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~-----~~~i~~~~l   33 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG-----LPHISTGDL   33 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC-----CeEEECcHH
Confidence            78999999999999999999874     346776554

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.11  E-value=7e-06  Score=76.66  Aligned_cols=116  Identities=22%  Similarity=0.250  Sum_probs=67.4

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe----eccccc-------------ccCCC--CCcc----
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD----NCRHGL-------------NRDLS--FKAE----  154 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd----~i~~~~-------------~~~~~--~~~~----  154 (279)
                      ...+|++++|+|+||-||||.+++|+|.+ .|.-|..  ++.    ++-+..             ..++.  ..++    
T Consensus        96 ~pr~G~V~GilG~NGiGKsTalkILaGel-~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~  172 (591)
T COG1245          96 TPRPGKVVGILGPNGIGKSTALKILAGEL-KPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL  172 (591)
T ss_pred             CCCCCcEEEEEcCCCccHHHHHHHHhCcc-ccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence            34689999999999999999999999999 7765543  321    110000             00000  0000    


Q ss_pred             cHHHHHHHHHHHHHHHHhCC----------cch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675          155 DRVENIRRIGEVAKLFADAG----------VIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       155 ~~~~~~~~v~~~~~~~~~~~----------~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~  218 (279)
                      -.+..-..+.++.....+.|          +..    -+..+|+++-|| +++.+++++++|  -++|||.+.|+-+..
T Consensus       173 iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADv--Y~FDEpsSyLDi~qR  249 (591)
T COG1245         173 IPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADV--YFFDEPSSYLDIRQR  249 (591)
T ss_pred             HHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCE--EEEcCCcccccHHHH
Confidence            00000001111111111111          111    234578888888 888899999998  899999998876654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.10  E-value=1.3e-05  Score=73.00  Aligned_cols=41  Identities=24%  Similarity=0.340  Sum_probs=33.6

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+|++++|+||||+||||++..|++.+ .+..+.|.+.+-|.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l-~~~g~~V~Li~~D~  152 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKY-KAQGKKVLLAAGDT  152 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH-HhcCCeEEEEecCc
Confidence            468999999999999999999999999 56666666554443

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.10  E-value=6.5e-05  Score=66.76  Aligned_cols=143  Identities=22%  Similarity=0.254  Sum_probs=76.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhC----Ccchh
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADA----GVICI  178 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~i  178 (279)
                      +++.+.|.|||||||-+++|..+=      -..+|.-+..                   .+.+...++...    ..+++
T Consensus         2 ~~vIiTGlSGaGKs~Al~~lED~G------y~cvDNlP~~-------------------Ll~~l~~~~~~~~~~~~~~Ai   56 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRALEDLG------YYCVDNLPPS-------------------LLPQLIELLAQSNSKIEKVAI   56 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHHHhcC------eeEEcCCcHH-------------------HHHHHHHHHHhcCCCCceEEE
Confidence            578999999999999999998753      3355544331                   122333333311    11222


Q ss_pred             cccCChHH--HHH-HHHHHhCC-CCCccEEEEeCCccchhccChhh--HHHHHhCCC-CCCCccccCcCCC-CCCCceEE
Q 023675          179 ACLISPYR--KDR-DACRSMLP-EGDFIEVFMDVPLQVCEARDPKG--LYKLAREGK-VKGFTGIDDPYEP-PLNCEIVL  250 (279)
Q Consensus       179 ~~~~~~~~--~~r-~~ar~l~~-~~~~i~i~ld~p~~~l~~R~~~~--l~~~~~~~~-~~~~~~~r~~~~~-~~~a~~~i  250 (279)
                      +-......  ... +....+.. ...+-.+|||++.+.|.+|....  -......+. ++.+...|..+.+ .+.||++|
T Consensus        57 ~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vI  136 (284)
T PF03668_consen   57 VIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVI  136 (284)
T ss_pred             EEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEE
Confidence            21111111  111 22222222 22445599999999999997421  000000000 0111111222222 12488999


Q ss_pred             EccCCCCCCHHHHHHHHHHHHHh
Q 023675          251 KQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       251 ~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      ||   +..++.+.-+.|.+.+..
T Consensus       137 DT---s~l~~~~Lr~~i~~~~~~  156 (284)
T PF03668_consen  137 DT---SNLSVHQLRERIRERFGG  156 (284)
T ss_pred             EC---CCCCHHHHHHHHHHHhcc
Confidence            99   999999999999887753

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.08  E-value=1.9e-06  Score=66.75  Aligned_cols=33  Identities=45%  Similarity=0.551  Sum_probs=27.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +|+|+|+|||||||+++.|+..++     ..+++.|++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~-----~~~i~~d~~   33 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG-----FPVISMDDL   33 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT-----CEEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC-----CeEEEecce
Confidence            589999999999999999999884     336676663

...

>PRK02496 adk adenylate kinase; Provisional

Probab=98.08  E-value=9.9e-06  Score=67.72  Aligned_cols=25  Identities=36%  Similarity=0.520  Sum_probs=22.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcccc
Q 023675          104 VIWITGLSGSGKSTLACALSQALHW  128 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~  128 (279)
                      .++|+|++||||||+++.|+..++.
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~   27 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHI   27 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999998853

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.07  E-value=2.9e-05  Score=73.18  Aligned_cols=140  Identities=20%  Similarity=0.210  Sum_probs=94.0

Q ss_pred             CCeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc------ccccc
Q 023675           80 TNILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR------HGLNR  147 (279)
Q Consensus        80 ~~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~------~~~~~  147 (279)
                      .-++++++++.-..      ..||.+.+||+++|.|-.|.|-+.|+.+|+|+. .+.+|.|.++|.++.      +....
T Consensus       256 ~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr-~~~~G~I~l~G~~v~~~~~~~~~r~~  334 (501)
T COG3845         256 VVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR-KPASGRILLNGKDVLGRLSPRERRRL  334 (501)
T ss_pred             eEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC-ccCCceEEECCEeccccCCHHHHHhc
Confidence            44677777765533      349999999999999999999999999999998 677799999999861      11122


Q ss_pred             CCCCCcccHHH-----------H------------------HHHHHH-HHHHHHhCCcc-----hhcccCChHHHHH-HH
Q 023675          148 DLSFKAEDRVE-----------N------------------IRRIGE-VAKLFADAGVI-----CIACLISPYRKDR-DA  191 (279)
Q Consensus       148 ~~~~~~~~~~~-----------~------------------~~~v~~-~~~~~~~~~~~-----~i~~~~~~~~~~r-~~  191 (279)
                      .++|.++++..           +                  ...+.. ...+...+.+.     .-...+|++.+|+ =.
T Consensus       335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Il  414 (501)
T COG3845         335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLIL  414 (501)
T ss_pred             CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhh
Confidence            34454444310           0                  001111 11222233332     2344577888887 66


Q ss_pred             HHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLY  222 (279)
Q Consensus       192 ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~  222 (279)
                      +|++..+|++  ++...|+-.++--....++
T Consensus       415 aREl~~~p~l--LI~~qPTrGLDvgA~~~I~  443 (501)
T COG3845         415 ARELARRPDL--LIAAQPTRGLDVGAIEFIH  443 (501)
T ss_pred             hhhhccCCCE--EEEcCCCccccHHHHHHHH
Confidence            8999999998  8999998888765544433

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.07  E-value=3.2e-05  Score=65.43  Aligned_cols=110  Identities=25%  Similarity=0.371  Sum_probs=56.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccC--CCCCcccHHHHHHHHHHHHHHHHh--CCcchhc
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD--LSFKAEDRVENIRRIGEVAKLFAD--AGVICIA  179 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~i~  179 (279)
                      .+.+.|++||||||+++-|++.|.....-.+.+..|-.+ ....+  .+.-.+..++....  ....++..  ....+++
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~-~i~~DEslpi~ke~yres~~k--s~~rlldSalkn~~VIv   79 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR-GILWDESLPILKEVYRESFLK--SVERLLDSALKNYLVIV   79 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh-heecccccchHHHHHHHHHHH--HHHHHHHHHhcceEEEE
Confidence            578999999999999999999995443333433332221 11100  11111111221111  11111111  1345666


Q ss_pred             ccCChHHHHH-H---HHHHhCCCCCccEEEEeCCccchhccCh
Q 023675          180 CLISPYRKDR-D---ACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       180 ~~~~~~~~~r-~---~ar~l~~~~~~i~i~ld~p~~~l~~R~~  218 (279)
                      +.+.-....| +   .+..+-.  .+-.|++.+|++.|.+|..
T Consensus        80 DdtNYyksmRrqL~ceak~~~t--t~ciIyl~~plDtc~rrN~  120 (261)
T COG4088          80 DDTNYYKSMRRQLACEAKERKT--TWCIIYLRTPLDTCLRRNR  120 (261)
T ss_pred             ecccHHHHHHHHHHHHHHhcCC--ceEEEEEccCHHHHHHhhc
Confidence            6544333223 2   2222222  3445999999999999874

>PRK06547 hypothetical protein; Provisional

Probab=98.06  E-value=6.9e-06  Score=68.30  Aligned_cols=38  Identities=34%  Similarity=0.382  Sum_probs=30.2

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      .+..+|+|.|+|||||||+++.|+..+..     .+++.|++.
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~-----~~~~~d~~~   50 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTGF-----QLVHLDDLY   50 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCC-----Ceeccccee
Confidence            44668899999999999999999998743     366777654

>PLN02165 adenylate isopentenyltransferase

Probab=98.05  E-value=3.3e-05  Score=70.33  Aligned_cols=30  Identities=37%  Similarity=0.470  Sum_probs=26.8

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .-.+|.+++|+||+|||||||+..|++.++
T Consensus        39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~   68 (334)
T PLN02165         39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP   68 (334)
T ss_pred             cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence            345688999999999999999999999984

>PLN02924 thymidylate kinase

Probab=98.05  E-value=1.8e-05  Score=68.47  Aligned_cols=35  Identities=34%  Similarity=0.460  Sum_probs=29.6

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCcc
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL  132 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G  132 (279)
                      ..++|.+|+|-|..||||||+++.|+..+...+.-
T Consensus        12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~   46 (220)
T PLN02924         12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVA   46 (220)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence            34679999999999999999999999999654433

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.04  E-value=2.6e-05  Score=67.90  Aligned_cols=42  Identities=24%  Similarity=0.166  Sum_probs=34.7

Q ss_pred             eccCCeEEEEEcCCCChHHHHH-HHHHHccccCCccEEEEcCee
Q 023675           98 LQQKGCVIWITGLSGSGKSTLA-CALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~-~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      -+++|+++.|+|++||||||++ +.+.+.+ .++...+++..+.
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~e~   62 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVSTQL   62 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCCC
Confidence            3788999999999999999995 7788777 6677778887543

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.03  E-value=4.3e-06  Score=72.57  Aligned_cols=33  Identities=36%  Similarity=0.397  Sum_probs=29.2

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccE
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLT  133 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~  133 (279)
                      .++.+++|.|+||||||||++.|++.+ .+..|.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l-~~~~g~   63 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALL-QQDGEL   63 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh-hhccCC
Confidence            467899999999999999999999999 566665

>PRK08356 hypothetical protein; Provisional

Probab=98.03  E-value=2.5e-05  Score=66.06  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHH
Q 023675          102 GCVIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      ..+++|+|++||||||+++.|..
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~~   27 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFEE   27 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999964

>TIGR01351 adk adenylate kinases

Probab=98.03  E-value=9.7e-06  Score=69.38  Aligned_cols=105  Identities=15%  Similarity=0.112  Sum_probs=56.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-cccccccCC-------------CCCcccHHHHHHHHHHHHHHH
Q 023675          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDL-------------SFKAEDRVENIRRIGEVAKLF  170 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~  170 (279)
                      |+|+|++||||||+++.|+..++.     .+++..+ +++.+...-             .+.+.+.  ....+   ...+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~-----~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~--~~~l~---~~~i   71 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGL-----PHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEI--VNQLV---KERL   71 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC-----CeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHH--HHHHH---HHHH
Confidence            789999999999999999998743     3666543 333221110             0111110  01111   1111


Q ss_pred             Hh---CCcchhcccCChHHHHHHHHHHhCC-CCCccEEEEeCCccchhccChhh
Q 023675          171 AD---AGVICIACLISPYRKDRDACRSMLP-EGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       171 ~~---~~~~~i~~~~~~~~~~r~~ar~l~~-~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      ..   .+...++++......+.+.+.+... .+.+ .|+|+.|.+.+.+|+..+
T Consensus        72 ~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~-vi~L~~~~~~~~~Rl~~R  124 (210)
T TIGR01351        72 TQNQDNENGFILDGFPRTLSQAEALDALLKEKIDA-VIELDVPDEELVERLSGR  124 (210)
T ss_pred             hcCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCE-EEEEECCHHHHHHHHHCC
Confidence            11   0122234433333344455555554 4444 489999999999888654

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
3uie_A	200	Crystal Structure Of Adenosine 5'-Phosphosulfate Ki		6e-92
1d6j_A	211	Crystal Structure Of Adenosine 5'-Phosphosulfate (A		6e-54
1x6v_B	630	The Crystal Structure Of Human 3'-Phosphoadenosine-		1e-50
2ofw_A	208	Crystal Structure Of The Apsk Domain Of Human Papss		2e-50
2ofx_A	207	Crystal Structure Of The Apsk Domain Of Human Papss		1e-49
3cr7_A	197	Crystal Structure Of N-Terminal Truncation Of Aps K		7e-49
2pey_A	179	Crystal Strucutre Of Deletion Mutant Of Aps-Kinase		2e-47
2ax4_A	198	Crystal Structure Of The Kinase Domain Of Human 3'-		4e-47
2gks_A	546	Crystal Structure Of The Bi-Functional Atp Sulfuryl		1e-41
2yvu_A	186	Crystal Structure Of Ape1195 Length = 186		4e-33
3cr8_A	552	Hexameric Aps Kinase From Thiobacillus Denitrifican		7e-29
1m8p_A	573	Crystal Structure Of P. Chrysogenum Atp Sulfurylase		8e-24
1i2d_A	573	Crystal Structure Of Atp Sulfurylase From Penicilli		9e-24
4eun_A	200	Crystal Structure Of A Sugar Kinase (Target Efi-502		8e-04

>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase From Arabidopsis Thaliana In Complex With Amppnp And Aps Length = 200

Iteration: 1
 Score =  333 bits (854), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 159/201 (79%), Positives = 175/201 (87%), Gaps = 2/201 (0%)
Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
           STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL YILDG
Sbjct: 2   STNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61
Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
           DN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACRS+LPE
Sbjct: 62  DNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPE 121
Query: 199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCP 258
           GDF+EVFMDVPL VCEARDPKGLYKLAR GK+KGFTGIDDPYEPPLNCEI L + G    
Sbjct: 122 GDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLGREGG--T 179
Query: 259 SPADMVETVVSYLDENGFLRA 279
           SP +M E VV YLD  G+L+A
Sbjct: 180 SPIEMAEKVVGYLDNKGYLQA 200

>pdb|1D6J|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps) Kinase From Penicillium Chrysogenum Length = 211

Iteration: 1
 Score =  207 bits (526), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 109/213 (51%), Positives = 135/213 (63%), Gaps = 18/213 (8%)
Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILD 137
           STNI +H +++ + +R +L  Q+G  IW+TGLS SGKSTLA  L  Q +  R    Y LD
Sbjct: 2   STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61
Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-- 195
           GDN R GLN+DL F   DR ENIRRI EVAKLFAD+  I I   ISPYRKDRD  R +  
Sbjct: 62  GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 121
Query: 196 ---------LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNC 246
                    LP   F+EV++DVP++V E RDPKGLYK AREG +K FTGI  PYE P N 
Sbjct: 122 VATPGEETGLP---FVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANP 178
Query: 247 EIVLKQMGDDCPSPADMVETVVSYLDENGFLRA 279
           E+ +K    + P   D V+ ++ YLD  G+L A
Sbjct: 179 EVHVKNY--ELPV-QDAVKQIIDYLDTKGYLPA 208

>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'- Phosphosulfate Synthetase 1 Length = 630

Iteration: 1
 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/213 (49%), Positives = 137/213 (64%), Gaps = 11/213 (5%)
Query: 68  NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALS 123
           +N  QN  + ++TN+ +  + V +  R Q++  +G    C +W+TGLSG+GK+T++ AL 
Sbjct: 14  SNNAQNWGMQRATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALE 73
Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
           + L   G   Y LDGDN R GLN++L F  EDR EN+RRI EVAKLFADAG++CI   IS
Sbjct: 74  EYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFIS 133
Query: 184 PYRKDRDACRSMLPEG---DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPY 240
           PY +DR+  R  + EG    F EVF+D PL VCE RD KGLYK AR G++KGFTGID  Y
Sbjct: 134 PYTQDRNNARQ-IHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEY 192
Query: 241 EPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE 273
           E P   E+VLK   D C    D V+ VV  L E
Sbjct: 193 EKPEAPELVLKT--DSC-DVNDCVQQVVELLQE 222

>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 Complexed With 2 Aps Molecules Length = 208

Iteration: 1
 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/209 (50%), Positives = 134/209 (64%), Gaps = 15/209 (7%)
Query: 78  KSTNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALSQALHWRGKLT 133
           ++TN+ +  + V +  R Q++  +G    C IW+TGLSG+GK+T++ AL + L   G   
Sbjct: 5   RATNVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPC 64
Query: 134 YILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACR 193
           Y LDGDN R GLN++L F  EDR EN+RRI EVAKLFADAG++CI   ISPY +DR+  R
Sbjct: 65  YTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNAR 124
Query: 194 SM-----LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEI 248
            +     LP   F EVF+D PL VCE RD KGLYK AR G++KGFTGID  YE P   E+
Sbjct: 125 QIHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPEL 181
Query: 249 VLKQMGDDCPSPADMVETVVSYLDENGFL 277
           VLK   D C    D V+ VV  L+E   L
Sbjct: 182 VLKT--DSC-DVNDCVQQVVELLNERDIL 207

>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In Complex With Adpmg And Paps Length = 207

Iteration: 1
 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/204 (50%), Positives = 131/204 (64%), Gaps = 15/204 (7%)
Query: 79  STNILWHKNSVDKRDRQQLLQQKG----CVIWITGLSGSGKSTLACALSQALHWRGKLTY 134
           +TN+ +  + V +  R Q++  +G    C +W+TGLSG+GK+T++ AL + L   G   Y
Sbjct: 5   ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 64
Query: 135 ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRS 194
            LDGDN R GLN++L F  EDR EN+RRI EVAKLFADAG++CI   ISPY +DR+  R 
Sbjct: 65  TLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQ 124
Query: 195 M-----LPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIV 249
           +     LP   F EVF+D PL VCE RD KGLYK AR G++KGFTGID  YE P   E+V
Sbjct: 125 IHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELV 181
Query: 250 LKQMGDDCPSPADMVETVVSYLDE 273
           LK   D C    D V+ VV  L E
Sbjct: 182 LKT--DSC-DVNDCVQQVVELLQE 202

>pdb|3CR7|A Chain A, Crystal Structure Of N-Terminal Truncation Of Aps Kinase From Penicillium Chrysogenum: Ternary Structure With Adp And Paps Length = 197

Iteration: 1
 Score =  190 bits (483), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 102/192 (53%), Positives = 121/192 (63%), Gaps = 18/192 (9%)
Query: 100 QKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           Q+G  IW+TGLS SGKSTLA  L  Q +  R    Y LDGDN R GLN+DL F   DR E
Sbjct: 1   QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE 60
Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-----------LPEGDFIEVFMD 207
           NIRRI EVAKLFAD+  I I   ISPYRKDRD  R +           LP   F+EV++D
Sbjct: 61  NIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLP---FVEVYVD 117
Query: 208 VPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETV 267
           VP++V E RDPKGLYK AREG +K FTGI  PYE P N E+ +K    + P   D V+ +
Sbjct: 118 VPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNY--ELPV-QDAVKQI 174
Query: 268 VSYLDENGFLRA 279
           + YLD  G+L A
Sbjct: 175 IDYLDTKGYLPA 186

>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain Of Human Paps-Synthetase 1 Length = 179

Iteration: 1
 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 119/180 (66%), Gaps = 11/180 (6%)
Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
             +GC +W+TGLSG+GK+T++ AL + L   G   Y LDGDN R GLN++L F  EDR E
Sbjct: 2   HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREE 61
Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-----LPEGDFIEVFMDVPLQVC 213
           N+RRI EVAKLFADAG++CI   ISPY +DR+  R +     LP   F EVF+D PL VC
Sbjct: 62  NVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLP---FFEVFVDAPLHVC 118
Query: 214 EARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE 273
           E RD KGLYK AR G++KGFTGID  YE P   E+VLK   D C    D V+ VV  L E
Sbjct: 119 EQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKT--DSC-DVNDCVQQVVELLQE 175

>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'- Phosphoadenosine 5'-Phosphosulphate Synthetase 2 Length = 198

Iteration: 1
 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 118/178 (66%), Gaps = 11/178 (6%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160
           +GC +W+TGLSG+GK+T++ AL + L       Y LDGDN RHGLNR+L F   DR ENI
Sbjct: 21  RGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENI 80
Query: 161 RRIGEVAKLFADAGVICIACLISPYRKDRDACRSM-----LPEGDFIEVFMDVPLQVCEA 215
           RRI EVAKLFADAG++CI   ISP+ KDR+  R +     LP   F E+F+D PL +CE+
Sbjct: 81  RRIAEVAKLFADAGLVCITSFISPFAKDRENARKIHESAGLP---FFEIFVDAPLNICES 137
Query: 216 RDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE 273
           RD KGLYK AR G++KGFTGID  YE P   E VLK    +  + +D V  VV  L E
Sbjct: 138 RDVKGLYKRARAGEIKGFTGIDSDYEKPETPERVLKT---NLSTVSDCVHQVVELLQE 192

>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps Kinase From Aquifex Aeolicus, A Chemolithotrophic Thermophile Length = 546

Iteration: 1
 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 115/180 (63%), Gaps = 3/180 (1%)
Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
            ++G  +W+TGL  +GKST+A  L+  L  RG+   +LDGD  R  L+R L F  EDR+ 
Sbjct: 369 HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRIT 428
Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
           NI R+G VA        + I  L+SPYR  R+  R+M+ EG FIEVF+D P++VCE RD 
Sbjct: 429 NILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV 488
Query: 219 KGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR 278
           KGLYK A+EG +KGFTG+DDPYEPP+  E+   ++     +P +    ++ +L + GF++
Sbjct: 489 KGLYKKAKEGLIKGFTGVDDPYEPPVAPEV---RVDTTKLTPEESALKILEFLKKEGFIK 545

>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195 Length = 186

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 107/174 (61%), Gaps = 9/174 (5%)
Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
           +KG V+W+TGL GSGK+T+A  L+  L   G    +LDGD  R  ++    F  E+R+ +
Sbjct: 11  EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRH 70
Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQVCEARD 217
           ++RI  +A+L A  GVI I   +SPY++ R+  R ++ E    F+E+++   L+    RD
Sbjct: 71  LKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRD 130
Query: 218 PKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYL 271
           PKGLYK A +G+++ FTGI DPYEPP N ++VL        + ++ +E  VSYL
Sbjct: 131 PKGLYKKALKGELENFTGITDPYEPPENPQLVLD-------TESNTIEHNVSYL 177

>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans Length = 552

Iteration: 1
 Score =  124 bits (310), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 104/182 (57%), Gaps = 5/182 (2%)
Query: 99  QQKGCVIWITGLSGSGKSTLACALS-QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157
           +++G  ++ TGLSG+GKSTLA AL+ + +   G+   +LDGD  R  L+ +L F    R 
Sbjct: 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRD 425
Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEAR 216
            N+RRIG VA        I I   I+PYR+ R   R+M+   G F+E+ +  P++ CE+R
Sbjct: 426 VNVRRIGFVASEITKNRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESR 485
Query: 217 DPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGF 276
           D KGLY  AR G +  FTG+ DPYE P   E+ +   G       + V+ ++  L+  G+
Sbjct: 486 DRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDTTGLAI---DEAVQQILLKLEHEGY 542
Query: 277 LR 278
           LR
Sbjct: 543 LR 544

>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The T-State Length = 573

Iteration: 1
 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
           +G  I++TG   SGK  +A AL   L+ +G +   +L GD  RH L+ +L F  EDR  N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDP 218
           I+RI  VA     AG   IA  I+PY + R   R  + + G F  V +  PL+ CE  D 
Sbjct: 455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514
Query: 219 KGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFL 277
           +G+Y  AR G++KGFTG+DDPYE P   ++V+        S   +V  ++  L+  GFL
Sbjct: 515 RGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRS---IVHEIILVLESQGFL 570

>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium Chrysogenum Length = 573

Iteration: 1
 Score =  107 bits (266), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
           +G  I++TG   SGK  +A AL   L+ +G +   +L GD  RH L+ +L F  EDR  N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDP 218
           I+RI  VA     AG   IA  I+PY + R   R  + + G F  V +  PL+ CE  D 
Sbjct: 455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514
Query: 219 KGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFL 277
           +G+Y  AR G++KGFTG+DDPYE P   ++V+        S   +V  ++  L+  GFL
Sbjct: 515 RGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRS---IVHEIILVLESQGFL 570

>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144 From Janibacter Sp. Htcc2649), Unliganded Structure Length = 200

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEV 166
           + G+SGSGK+T+A  ++                     + R +    EDR   +R + E 
Sbjct: 34  VMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93
Query: 167 AKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
               ADAGV  I    +  R  RD  R   P  DF+   +D P +V + R
Sbjct: 94  MDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLH--LDGPAEVIKGR 141

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	1e-128
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	1e-121
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	1e-112
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	1e-112
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	1e-97
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	1e-88
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	6e-86
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	7e-77
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	1e-28
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	3e-20
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	9e-19
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	6e-17
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	6e-16
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	4e-15
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	7e-15
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	1e-12
2vli_A	183	Antibiotic resistance protein; transferase, tunica	1e-08
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	3e-08
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	2e-07
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	4e-05
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	3e-04
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	5e-04

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} PDB: 4fxp_A* Length = 200

 Score =  361 bits (928), Expect = e-128
 Identities = 158/201 (78%), Positives = 174/201 (86%), Gaps = 2/201 (0%)

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138
           STNI WH+ SV+K DRQ+LL QKGCVIW+TGLSGSGKSTLACAL+Q L+ +GKL YILDG
Sbjct: 2   STNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61

Query: 139 DNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
           DN RHGLNRDLSFKAEDR ENIRR+GEVAKLFADAG+ICIA LISPYR DRDACRS+LPE
Sbjct: 62  DNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPE 121

Query: 199 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCP 258
           GDF+EVFMDVPL VCEARDPKGLYKLAR GK+KGFTGIDDPYEPPLNCEI L    +   
Sbjct: 122 GDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLG--REGGT 179

Query: 259 SPADMVETVVSYLDENGFLRA 279
           SP +M E VV YLD  G+L+A
Sbjct: 180 SPIEMAEKVVGYLDNKGYLQA 200

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Length = 211

 Score =  345 bits (887), Expect = e-121
 Identities = 106/210 (50%), Positives = 130/210 (61%), Gaps = 12/210 (5%)

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137
           STNI +H +++ + +R +L  Q+G  IW+TGLS SGKSTLA  L   L   R    Y LD
Sbjct: 2   STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61

Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP 197
           GDN R GLN+DL F   DR ENIRRI EVAKLFAD+  I I   ISPYRKDRD  R +  
Sbjct: 62  GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 121

Query: 198 EG--------DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIV 249
                      F+EV++DVP++V E RDPKGLYK AREG +K FTGI  PYE P N E+ 
Sbjct: 122 VATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVH 181

Query: 250 LKQMGDDCPSPADMVETVVSYLDENGFLRA 279
           +K          D V+ ++ YLD  G+L A
Sbjct: 182 VKN---YELPVQDAVKQIIDYLDTKGYLPA 208

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Length = 179

 Score =  321 bits (824), Expect = e-112
 Identities = 95/181 (52%), Positives = 117/181 (64%), Gaps = 5/181 (2%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
             +GC +W+TGLSG+GK+T++ AL + L   G   Y LDGDN R GLN++L F  EDR E
Sbjct: 2   HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREE 61

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEAR 216
           N+RRI EVAKLFADAG++CI   ISPY +DR+  R +       F EVF+D PL VCE R
Sbjct: 62  NVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR 121

Query: 217 DPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGF 276
           D KGLYK AR G++KGFTGID  YE P   E+VLK    D     D V+ VV  L E   
Sbjct: 122 DVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKT---DSCDVNDCVQQVVELLQERDI 178

Query: 277 L 277
           +
Sbjct: 179 V 179

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Length = 186

 Score =  320 bits (822), Expect = e-112
 Identities = 67/183 (36%), Positives = 105/183 (57%), Gaps = 5/183 (2%)

Query: 91  KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLS 150
           +        +KG V+W+TGL GSGK+T+A  L+  L   G    +LDGD  R  ++    
Sbjct: 2   QALTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAG 61

Query: 151 FKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGD--FIEVFMDV 208
           F  E+R+ +++RI  +A+L A  GVI I   +SPY++ R+  R ++ E    F+E+++  
Sbjct: 62  FTREERLRHLKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKA 121

Query: 209 PLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVV 268
            L+    RDPKGLYK A +G+++ FTGI DPYEPP N ++VL     +  +    V  + 
Sbjct: 122 SLEEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQLVLDT---ESNTIEHNVSYLY 178

Query: 269 SYL 271
           S +
Sbjct: 179 SLV 181

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Length = 630

 Score =  298 bits (765), Expect = 1e-97
 Identities = 103/215 (47%), Positives = 134/215 (62%), Gaps = 9/215 (4%)

Query: 68  NNLCQNSTVAKSTNILWHKNSVDKRDRQQLLQQK----GCVIWITGLSGSGKSTLACALS 123
           +N  QN  + ++TN+ +  + V +  R Q++  +    GC +W+TGLSG+GK+T++ AL 
Sbjct: 14  SNNAQNWGMQRATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALE 73

Query: 124 QALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183
           + L   G   Y LDGDN R GLN++L F  EDR EN+RRI EVAKLFADAG++CI   IS
Sbjct: 74  EYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFIS 133

Query: 184 PYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYE 241
           PY +DR+  R +       F EVF+D PL VCE RD KGLYK AR G++KGFTGID  YE
Sbjct: 134 PYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYE 193

Query: 242 PPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGF 276
            P   E+VLK    D     D V+ VV  L E   
Sbjct: 194 KPEAPELVLKT---DSCDVNDCVQQVVELLQERDI 225

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Length = 552

 Score =  272 bits (698), Expect = 1e-88
 Identities = 74/224 (33%), Positives = 108/224 (48%), Gaps = 8/224 (3%)

Query: 61  ESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ---QLLQQKGCVIWITGLSGSGKST 117
                      Q    A      W+       +        +++G  ++ TGLSG+GKST
Sbjct: 325 ARLLTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKST 384

Query: 118 LACALSQALHWRGKLTY-ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVI 176
           LA AL+  L   G     +LDGD  R  L+ +L F    R  N+RRIG VA        I
Sbjct: 385 LARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGI 444

Query: 177 CIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTG 235
            I   I+PYR+ R   R+M+   G F+E+ +  P++ CE+RD KGLY  AR G +  FTG
Sbjct: 445 AICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTG 504

Query: 236 IDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLRA 279
           + DPYE P   E+ +   G    +  + V+ ++  L+  G+LR 
Sbjct: 505 VSDPYEVPETPELAIDTTGL---AIDEAVQQILLKLEHEGYLRL 545

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Length = 546

 Score =  265 bits (679), Expect = 6e-86
 Identities = 80/202 (39%), Positives = 117/202 (57%), Gaps = 3/202 (1%)

Query: 77  AKSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136
                    + +    +      ++G  +W+TGL  +GKST+A  L+  L  RG+   +L
Sbjct: 347 KLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLL 406

Query: 137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
           DGD  R  L+R L F  EDR+ NI R+G VA        + I  L+SPYR  R+  R+M+
Sbjct: 407 DGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMM 466

Query: 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDD 256
            EG FIEVF+D P++VCE RD KGLYK A+EG +KGFTG+DDPYEPP+  E+ +      
Sbjct: 467 EEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDT---T 523

Query: 257 CPSPADMVETVVSYLDENGFLR 278
             +P +    ++ +L + GF++
Sbjct: 524 KLTPEESALKILEFLKKEGFIK 545

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Length = 573

 Score =  243 bits (621), Expect = 7e-77
 Identities = 70/202 (34%), Positives = 102/202 (50%), Gaps = 5/202 (2%)

Query: 78  KSTNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-IL 136
                 + +     R+       +G  I++TG   SGK  +A AL   L+ +G  +  +L
Sbjct: 372 IPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL 431

Query: 137 DGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSML 196
            GD  RH L+ +L F  EDR  NI+RI  VA     AG   IA  I+PY + R   R  +
Sbjct: 432 LGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAV 491

Query: 197 PE-GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGD 255
            + G F  V +  PL+ CE  D +G+Y  AR G++KGFTG+DDPYE P   ++V+     
Sbjct: 492 SQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQ 551

Query: 256 DCPSPADMVETVVSYLDENGFL 277
              S   +V  ++  L+  GFL
Sbjct: 552 ---SVRSIVHEIILVLESQGFL 570

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score =  108 bits (272), Expect = 1e-28
 Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 14/178 (7%)

Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162
            +I +TGL G GKST +  L++ L        +L  D  R           E   E I++
Sbjct: 5   MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP----VWKEKYEEFIKK 60

Query: 163 IGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG 220
                   A      I    + Y   R    ++  +   ++  +++   L V   R+ + 
Sbjct: 61  STYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER 120

Query: 221 LYKLAREGKVKGFTGIDDPYEPPLNCE----IVLKQMGDDCPSPADMVETVVSYLDEN 274
             K+  E        + + ++ P          L           ++ + ++    E 
Sbjct: 121 GEKIPNE----VIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEI 174

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 85.1 bits (210), Expect = 3e-20
 Identities = 45/201 (22%), Positives = 74/201 (36%), Gaps = 28/201 (13%)

Query: 85  HKNSVD-----KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
           H + VD        +  +  +    + + G+SGSGK+T+A  ++             + D
Sbjct: 7   HSSGVDLGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLE-----FAEAD 61

Query: 140 NCRHGLNRD-----LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRS 194
                 N       +    EDR   +R + E     ADAGV  I    +  R  RD  R 
Sbjct: 62  AFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVSTIITCSALKRTYRDVLRE 121

Query: 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID---DPYEPPLNCEIVLK 251
             P  DF  + +D P +V + R         REG     + +       E     E  + 
Sbjct: 122 GPPSVDF--LHLDGPAEVIKGR------MSKREGHFMPASLLQSQLATLEALEPDESGI- 172

Query: 252 QMGDDCPSPADMVETVVSYLD 272
            + D    P  ++E  +++LD
Sbjct: 173 -VLDLRQPPEQLIERALTWLD 192

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175

 Score = 80.5 bits (198), Expect = 9e-19
 Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKA 153
                +  + G+SGSGKS +A  ++  LH        LDGD      N +          
Sbjct: 5   NHDHHIYVLMGVSGSGKSAVASEVAHQLHAA-----FLDGDFLHPRRNIEKMASGEPLND 59

Query: 154 EDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213
           +DR   ++ + + A        + +    +  +  RD  R   P  +   +++     V 
Sbjct: 60  DDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNP--NLSFIYLKGDFDVI 117

Query: 214 EARDPKGLYKLAREGKVKGFTGID---DPYEPPLNCEIVLKQMGDDCPSPADMVETVVSY 270
           E+R        AR+G       +    +  + P   E  +  + D       +V + +  
Sbjct: 118 ESR------LKARKGHFFKTQMLVTQFETLQEPGADETDVLVV-DIDQPLEGVVASTIEV 170

Query: 271 LDEN 274
           + + 
Sbjct: 171 IKKG 174

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 76.1 bits (187), Expect = 6e-17
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 12/124 (9%)

Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159
           Q   +I +TG   +GK+TL+ AL+  L        +L  D  +  +   L +   +    
Sbjct: 3   QTPALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGLGWSDREWSRR 57

Query: 160 IRRIG-----EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGD--FIEVFMDVPLQV 212
           +           A     +G   I         D +  +++        I++       V
Sbjct: 58  VGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117

Query: 213 CEAR 216
              R
Sbjct: 118 LVER 121

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 72.9 bits (178), Expect = 6e-16
 Identities = 26/186 (13%), Positives = 53/186 (28%), Gaps = 26/186 (13%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQAL----------HWRGKLTYILDGDNCRHGLNRDLS 150
              +I + G S +GKS +   L   L               +   +         + D  
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61

Query: 151 FKAEDRVENIRRI-GEVAKLFADAG--VICIACLISPYRKDRDACRSMLPEGDFIEVFMD 207
                    +     E     A AG  +I     +      ++  RS + + D + V + 
Sbjct: 62  VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAA-AQERWRSFVGDLDVLWVGVR 120

Query: 208 VPLQVCEARDPKGLYKLAREGKVKGFTGID-DPYEPPLNCEIVLKQMGD-DCPSPADMVE 265
               V E R+       AR  +V G            +  ++ +    D       +   
Sbjct: 121 CDGAVAEGRE------TARGDRVAGMAAKQAYVVHEGVEYDVEV----DTTHKESIECAW 170

Query: 266 TVVSYL 271
            + +++
Sbjct: 171 AIAAHV 176

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 71.1 bits (174), Expect = 4e-15
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN--- 159
            +  ITG +G GKST    L+  L      +  ++GD   H +        E        
Sbjct: 3   KLYIITGPAGVGKSTTCKRLAAQL----DNSAYIEGDIINHMVVGGYRPPWESDELLALT 58

Query: 160 IRRIGEVAKLFADAGVICIACLI---SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            + I ++   F  A    +   I             ++ + + +   + +    +    R
Sbjct: 59  WKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRR 118

Query: 217 D 217
           D
Sbjct: 119 D 119

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 70.5 bits (172), Expect = 7e-15
 Identities = 28/187 (14%), Positives = 53/187 (28%), Gaps = 21/187 (11%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKA 153
              G ++ ++G  GSGKST+A AL+               D+    +        L    
Sbjct: 6   DLGGNILLLSGHPGSGKSTIAEALANLPGVPK---VHFHSDDLWGYIKHGRIDPWLPQSH 62

Query: 154 EDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFI--EVFMDVPLQ 211
           +     ++   +VA  +A  G   I   +        A  ++     +I         ++
Sbjct: 63  QQNRMIMQIAADVAGRYAKEGYFVILDGVV-RPDWLPAFTALARPLHYIVLRTTAAEAIE 121

Query: 212 VCEARDPKGLYK-LAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSY 270
            C  R    L   L        F  +       L                   +++ ++ 
Sbjct: 122 RCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLP---------VSGKDTDQALQSAINA 172

Query: 271 LDENGFL 277
           L    F 
Sbjct: 173 LQSGRFR 179

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 64.7 bits (157), Expect = 1e-12
 Identities = 40/194 (20%), Positives = 68/194 (35%), Gaps = 26/194 (13%)

Query: 88  SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR 147
           S++ +     +++    I + G+SGSGKS++  A+++A  +       ++GD      N 
Sbjct: 4   SIEYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPF-----IEGDALHPPENI 58

Query: 148 D-----LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFI 202
                 +    +DR   +  IGE         V C A      R  RD  R   P G   
Sbjct: 59  RKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSCSA----LKRSYRDKLRESAP-GGLA 113

Query: 203 EVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID---DPYEPPLNCEIVLKQMGDDCPS 259
            VF+     V   R         R G     + +    +  E P      +    D    
Sbjct: 114 FVFLHGSESVLAER------MHHRTGHFMPSSLLQTQLETLEDPRGEVRTV--AVDVAQP 165

Query: 260 PADMVETVVSYLDE 273
            A++V   ++ L  
Sbjct: 166 LAEIVREALAGLAR 179

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Length = 183

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 4/116 (3%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           +IWI G  G GK+  A  L + L           G   R       S   ++    I  +
Sbjct: 7   IIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLT-PGFSGDPQEHPMWIPLM 65

Query: 164 GEVAKLFADAG---VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            +  +  +      +I    +    R  R                +  PL V   R
Sbjct: 66  LDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLER 121

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 18/120 (15%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA-------EDR 156
           +I + G     KST+A  LS+ L +      I+ G +     + +            ED 
Sbjct: 3   LIILEGPDCCFKSTVAAKLSKELKYP-----IIKGSSFELAKSGNEKLFEHFNKLADEDN 57

Query: 157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
           V  I R      ++A         L       R     +  +     V++     V + R
Sbjct: 58  VI-IDRFVYSNLVYAKKFKDYSI-LTERQL--RFIEDKIKAKAKV--VYLHADPSVIKKR 111

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 25/126 (19%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVE 158
           +I   G  GSGKST A              Y ++ D+ R  +       +  +  +    
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59

Query: 159 NIRRIGEVAKLFADAGVICIACLIS---PYRKDRDACRSMLPE--GDFIEVFMDVPLQVC 213
                 + AK     G      +IS      + R A  +   E          DVP    
Sbjct: 60  VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119

Query: 214 EARDPK 219
             R+ K
Sbjct: 120 VKRNSK 125

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 14/124 (11%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVE 158
           +I   G  GSGKST A              Y ++ D+ R  +       +  +  +    
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59

Query: 159 NIRRIGEVAKLFADAGVICIACLIS---PYRKDRDACRSMLPE--GDFIEVFMDVPLQVC 213
                 + AK     G      +IS      + R A  +   E          DVP    
Sbjct: 60  VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119

Query: 214 EARD 217
             R+
Sbjct: 120 VKRN 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 8e-07
 Identities = 34/224 (15%), Positives = 65/224 (29%), Gaps = 71/224 (31%)

Query: 81  NILWHKNSV-DKRD----------RQQLLQ-QKGCVIWITGLSGSGKSTLA--------- 119
           + L++ N V  K +          RQ LL+ +    + I G+ GSGK+ +A         
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 120 -CALSQALHW---------------RGKLTYILDGDNC-RHGLNRDLSFKAEDRVENIRR 162
            C +   + W                 KL Y +D +   R   + ++  +       +RR
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 163 I------------------GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEV 204
           +                   +    F +    C   L + +++  D     L       +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAF-NLS--CKILLTTRFKQVTDF----LSAATTTHI 289

Query: 205 FMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEI 248
            +D         + K L  L +      +        P      
Sbjct: 290 SLDHHSMTLTPDEVKSL--LLK------YLDCRPQDLPREVLTT 325

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 40/276 (14%), Positives = 71/276 (25%), Gaps = 108/276 (39%)

Query: 26  FRTSVKMSGFFNVSRLRSLQP--IKALEESATASVVQESAAISGNNLCQNSTVAKSTNIL 83
             T ++ S       L  L+P   + + +    SV   SA I    L           ++
Sbjct: 355 LTTIIESS-------LNVLEPAEYRKMFDRL--SVFPPSAHIPTILLS----------LI 395

Query: 84  WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143
           W    V K D   ++ +               S +            + T  +       
Sbjct: 396 W--FDVIKSDVMVVVNK--LH---------KYSLVEK-------QPKESTISI------P 429

Query: 144 GLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRS--MLPEGD- 200
            +  +L  K E+     R I                  +  Y   +       + P  D 
Sbjct: 430 SIYLELKVKLENEYALHRSI------------------VDHYNIPKTFDSDDLIPPYLDQ 471

Query: 201 ---------------------FIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDP 239
                                F  VF+D   +  E        K+  +      +G    
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLD--FRFLEQ-------KIRHDSTAWNASG---- 518

Query: 240 YEPPLNCEIVLK----QMGDDCPSPADMVETVVSYL 271
               LN    LK     + D+ P    +V  ++ +L
Sbjct: 519 --SILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Length = 206

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 32/183 (17%)

Query: 97  LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD---NCRHGLNRDLSFKA 153
            L  KG         GSGK+T    ++ AL   G    ++D D   +  +      +   
Sbjct: 6   FLNPKG---------GSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFD 56

Query: 154 EDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVC 213
                + + +  + K  AD     +               + +   D +     +P+   
Sbjct: 57  VFTAASEKDVYGIRKDLADYDFAIVDG---AGS-LSVITSAAVMVSDLVI----IPVT-P 107

Query: 214 EARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE 273
              D      +    + + +          +    ++ +        A M+  +   + +
Sbjct: 108 SPLDFSAAGSVVTVLEAQAY-------SRKVEARFLITR----KIEMATMLNVLKESIKD 156

Query: 274 NGF 276
            G 
Sbjct: 157 TGV 159

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140
           V+ I GLS SGK+TLA  LSQ L  +G    +   D+
Sbjct: 24  VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162
           +I +TG SG+G ST+     Q     G     ++GD        D+  + + R      
Sbjct: 7   IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDA 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.94
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.89
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.88
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.82
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.81
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.81
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.8
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.79
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.79
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.79
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.78
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.78
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.78
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.78
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.77
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.77
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.76
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.76
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.76
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.76
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.76
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.76
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.76
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.76
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.75
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.75
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.75
1g6h_A	257	High-affinity branched-chain amino acid transport	99.75
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.74
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.74
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.74
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.74
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.74
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.73
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.73
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.72
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.71
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.71
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.7
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.7
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.7
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.7
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.7
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.7
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.69
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.69
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.68
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.67
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.67
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.67
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.67
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.66
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.62
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.61
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.59
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.58
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.53
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.51
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.5
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.47
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.47
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.46
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.45
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.43
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.41
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.4
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.4
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.4
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.39
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.36
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	99.34
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.34
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.29
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.26
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.22
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.22
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.21
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.21
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.17
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.16
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.14
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.13
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.12
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.12
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.11
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.09
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.09
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.08
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.07
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.06
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.05
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.02
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.99
1via_A	175	Shikimate kinase; structural genomics, transferase	98.97
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.96
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.94
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.92
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.9
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.9
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.9
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.89
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.89
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.89
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.88
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.87
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.86
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.86
2og2_A	359	Putative signal recognition particle receptor; nuc	98.86
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.85
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.84
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.84
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.84
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.83
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.81
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.81
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.8
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.79
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.78
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.77
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.77
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.76
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.76
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.76
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.75
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.75
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.74
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.74
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.74
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	98.74
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.73
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.7
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.69
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.68
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.68
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.67
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.65
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.63
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.62
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.61
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.61
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.6
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.6
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.6
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.58
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.56
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.56
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.56
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.55
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.55
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.54
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.54
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.54
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.53
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.52
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.5
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.5
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.5
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.5
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.49
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.49
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.48
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.48
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.48
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.47
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.46
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.46
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.45
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.43
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.41
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.4
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.38
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.38
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.37
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.36
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.36
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.36
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.36
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.35
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.33
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.33
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.33
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.32
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.3
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.3
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.28
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.27
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.25
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.25
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	98.25
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.25
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.24
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.24
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.23
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.2
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.2
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.2
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.19
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.17
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.17
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.17
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.17
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.16
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.13
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.13
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.13
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.12
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.12
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.11
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.11
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.11
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.1
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.09
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.09
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	98.06
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.04
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.02
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.0
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.99
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.98
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.98
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.97
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.97
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.96
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.95
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.95
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.87
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.86
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.86
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.85
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.84
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.82
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.78
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.78
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.78
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.78
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.76
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.75
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.74
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.72
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.72
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.71
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.69
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.69
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.67
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.67
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.65
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.64
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.64
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.63
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.59
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.56
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.55
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.55
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.52
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.51
3ice_A	422	Transcription termination factor RHO; transcriptio	97.51
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.5
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.48
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.47
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.46
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.46
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.44
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.43
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.4
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.39
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.38
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.37
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.36
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.3
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.3
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.3
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.27
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.27
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.22
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.22
3bos_A	242	Putative DNA replication factor; P-loop containing	97.22
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.18
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.18
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.14
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.11
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.1
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.1
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.07
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.05
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.02
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.02
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.0
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.99
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.98
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.96
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	96.94
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.94
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.93
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.92
2xxa_A	433	Signal recognition particle protein; protein trans	96.92
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.89
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.88
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.88
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.88
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.87
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.87
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.86
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.86
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.85
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.85
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.85
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.85
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.83
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.83
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.83
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.82
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.79
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.79
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.78
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.78
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.77
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.75
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.74
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.73
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.73
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.72
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.72
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.71
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.71
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.71
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.69
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.69
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.68
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.65
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.62
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.62
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.6
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.57
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.56
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.55
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.54
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.54
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.5
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.49
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.48
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.45
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.45
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.44
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.44
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.4
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.39
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.39
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.38
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.36
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.36
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.34
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.34
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.34
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.34
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.32
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.32
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.3
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.3
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.3
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.29
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.29
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.27
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.26
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.25
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.25
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.25
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.24
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.24
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.22
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.22
2qgz_A	308	Helicase loader, putative primosome component; str	96.21
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.21
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.2
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.19
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.17
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.16
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.16
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.15
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.14
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.14
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.13
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.13
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.12
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.11
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.11
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.11
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.08
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.08
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.06
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.06
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.04
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.04
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.02
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.02
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.02
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.02
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.02
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.01
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.98
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.98
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.98
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.94
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.94
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.94
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.93
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.92
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.91
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.9
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.9
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.89
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.89
3e1y_E	204	Eukaryotic peptide chain release factor GTP-bindi	95.89
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.89
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.88
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.87
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.87
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.86
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.86
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.86
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.84
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.84
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.83
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.81
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.8
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.79
3io5_A	333	Recombination and repair protein; storage dimer, i	95.79
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.78
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.78
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.77
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.77
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.76
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.76
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	95.76
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.74
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.74
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.73
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.72
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.71
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	95.7
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.7
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.69
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.69
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.68
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.68
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.67
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.67
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.67
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.66
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.66
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	95.64
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.64
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.63
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.63
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.63
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.62
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.62
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.59
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.58
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.58
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.58
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.57
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.57
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.57
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.57
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.56
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.56
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.55
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.55
3co5_A	143	Putative two-component system transcriptional RES	95.53
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.52
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.52
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.52
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.51
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.5
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.5
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.49
3pvs_A	447	Replication-associated recombination protein A; ma	95.46
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.46
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.45
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.44
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.44
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	95.43
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.43
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.43
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.41
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.38
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.36
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.35
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.34
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.33
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.33
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.3
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.3
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	95.29
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.27
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.27
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.26
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.25

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.94  E-value=1.7e-26  Score=194.87  Aligned_cols=195  Identities=79%  Similarity=1.299  Sum_probs=163.9

Q ss_pred             CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE--EEcCeecccccccCCCCCcccHH
Q 023675           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY--ILDGDNCRHGLNRDLSFKAEDRV  157 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i--~ldgd~i~~~~~~~~~~~~~~~~  157 (279)
                      .++.|+...++..++.++..++|++++|+|+|||||||++++|++.+..  .|.+  ++|+++++..+...+++..++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~--~G~~~~~~d~d~~~~~~~~~~~~~~~~~~   80 (200)
T 3uie_A            3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ--KGKLCYILDGDNVRHGLNRDLSFKAEDRA   80 (200)
T ss_dssp             -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHTTTTTTTCCSSHHHHH
T ss_pred             CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCceEEEecCchhhhHhhcccCcChHHHH
Confidence            3577888888888888999999999999999999999999999999953  4555  99999998777777788888888


Q ss_pred             HHHHHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCcccc
Q 023675          158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID  237 (279)
Q Consensus       158 ~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r  237 (279)
                      .++..+..++..+...+..++..+.++....|+.+++++....++.+||++|.+.+.+|..++++...+.++...+..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~~~  160 (200)
T 3uie_A           81 ENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGID  160 (200)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBTTT
T ss_pred             HHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCCCC
Confidence            87777777888777888888888888777888889998887678889999999999999999999888888888888888


Q ss_pred             CcCCCCCCCceEEEccCCCC-CCHHHHHHHHHHHHHhCCCccC
Q 023675          238 DPYEPPLNCEIVLKQMGDDC-PSPADMVETVVSYLDENGFLRA  279 (279)
Q Consensus       238 ~~~~~~~~a~~~i~~~~~~~-~~~~e~~~~Il~~l~~~~~~~~  279 (279)
                      .+|++|..++++||+   +. .++++++++|+++|++++++.+
T Consensus       161 ~~~~~~~~~~~~idt---~~~~~~~e~v~~i~~~l~~~~~~~~  200 (200)
T 3uie_A          161 DPYEPPLNCEISLGR---EGGTSPIEMAEKVVGYLDNKGYLQA  200 (200)
T ss_dssp             BCCCCCSSCSEEECC---SSCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred             CcCcCCCCCCEEEec---CCCCCHHHHHHHHHHHHHHcCCCCC
Confidence            999888778899999   77 6999999999999999887654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.89  E-value=1e-23  Score=203.00  Aligned_cols=238  Identities=32%  Similarity=0.501  Sum_probs=140.3

Q ss_pred             ccccc---CccccccCccccccccccccchhhhhhhhcccccccccccccccCCCCeEEee-cceeecCCc--ceeccCC
Q 023675           29 SVKMS---GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHK-NSVDKRDRQ--QLLQQKG  102 (279)
Q Consensus        29 ~~~~~---~~~~~~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~--sl~i~~g  102 (279)
                      .+.++   +|.-++.+|+|.++|+.++.+..      ..++|+.+...+. .....+.|.. -.+....+.  +..+++|
T Consensus       297 ~i~pv~f~~~~y~~~~g~~~~~d~~~~~~~~------~~isgt~ir~~Lr-~G~~~p~~f~~peV~~vLR~~~~~~~~~G  369 (552)
T 3cr8_A          297 GVRLIAYPRMVYVEDRAEHLPEAEAPQGARL------LTLSGEEFQRRMR-AGLKIPEWYSFPEVLAELHRQTPPRERQG  369 (552)
T ss_dssp             TCEEECCCCEEEEGGGTEEEEGGGSCTTCCE------ECCCHHHHHHHHT-TTCCCCTTTSCHHHHHHHHHHSCCGGGSC
T ss_pred             CCeeeeccceEEecCCCeEEecccCCCCccc------ccCCHHHHHHHHh-cCCCCCccccccchhhhhhhhcccccccc
Confidence            44455   56666999999999999975211      1123333322111 1111112111 011111122  2368899


Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCcc-EE-EEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKL-TY-ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC  180 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G-~i-~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~  180 (279)
                      ++++|+|+||||||||+++|++.+ .+..| .+ ++|||+++..+...++|...++..+++.+..+.+.+...+..++..
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L-~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi~~  448 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARL-MEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAICA  448 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHH-HTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred             eEEEEECCCCChHHHHHHHHHHhh-cccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEEEe
Confidence            999999999999999999999999 56665 56 6999998765666677877666556666666655555555555554


Q ss_pred             cCChHHHHHHHHHHhCCCC-CccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCC
Q 023675          181 LISPYRKDRDACRSMLPEG-DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPS  259 (279)
Q Consensus       181 ~~~~~~~~r~~ar~l~~~~-~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~  259 (279)
                      ...+....++.++.++... +|+.|++++|.+.+.+|..++++...+.+.+..++.++.+||+|..++++|++   +..+
T Consensus       449 ~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~~adl~Idt---~~~s  525 (552)
T 3cr8_A          449 PIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDT---TGLA  525 (552)
T ss_dssp             CCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------CCCCCCSSCSEEECC---SSCC
T ss_pred             cCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCCCCCEEEEC---CCCC
Confidence            4443345555666665543 47789999999999999988888766777888999999999988778999998   7889


Q ss_pred             HHHHHHHHHHHHHhCCCc
Q 023675          260 PADMVETVVSYLDENGFL  277 (279)
Q Consensus       260 ~~e~~~~Il~~l~~~~~~  277 (279)
                      +++++++|+.+|++.+++
T Consensus       526 ~~e~v~~Il~~L~~~~~~  543 (552)
T 3cr8_A          526 IDEAVQQILLKLEHEGYL  543 (552)
T ss_dssp             HHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhcCcc
Confidence            999999999999987765

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.88  E-value=8.3e-23  Score=197.70  Aligned_cols=235  Identities=33%  Similarity=0.550  Sum_probs=179.3

Q ss_pred             CccccccCccccccccccccchhhhhhhhcccccccccccccccCCCCeEEee-cceeecCCcce--eccCCeEEEEEcC
Q 023675           34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHK-NSVDKRDRQQL--LQQKGCVIWITGL  110 (279)
Q Consensus        34 ~~~~~~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~sl--~i~~g~~i~lvG~  110 (279)
                      +|..++.+|+|.++|+.++.+..      ..++|+.+..... .....+.|+. -.++...+..+  ..++|.+|+|+|+
T Consensus       332 ~~~y~~~~g~~i~id~~~~~~~~------~~iSgt~ir~~l~-~g~~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~Gl  404 (573)
T 1m8p_A          332 MVTYLPDTDEYRPVDQVPAGVKT------LNISGTELRRRLR-SGAHIPEWFSYPEVVKILRESNPPRATQGFTIFLTGY  404 (573)
T ss_dssp             CCCBBTTTTBCCCSSSSCTTSCC------BCCCHHHHHHHHH-HTCCCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECS
T ss_pred             ceEEEcCCCcEEecccCCCCcee------ecCChHHHHHHHh-ccCCCCcccccccccHHHHHhcccccccceEEEeecC
Confidence            78888999999999999875211      1123332211011 1112223433 12333344444  5678899999999


Q ss_pred             CCChHHHHHHHHHHccccCC-ccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHH
Q 023675          111 SGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDR  189 (279)
Q Consensus       111 sGsGKSTl~~~L~~~l~~~~-~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r  189 (279)
                      |||||||+++.|+..|...+ ...+++|+|.++..+..+.+|...++..+++++.+++..+.+.+..++.+..++.+..|
T Consensus       405 sGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~VI~~~is~~~~~R  484 (573)
T 1m8p_A          405 MNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVIAAPIAPYEESR  484 (573)
T ss_dssp             TTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHH
T ss_pred             CCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCcHHHH
Confidence            99999999999999985433 34789999999887777788888888888888777787777778888888877777777


Q ss_pred             HHHHHhCCCC-CccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCCHHHHHHHHH
Q 023675          190 DACRSMLPEG-DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVV  268 (279)
Q Consensus       190 ~~ar~l~~~~-~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il  268 (279)
                      +.+++++... .++.||||+|.+.+.+|..++++...+.+++..+...+.+||.|..++++||+   +..++++++++|+
T Consensus       485 ~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~~~~p~~~dl~IDt---s~~s~eevv~~Il  561 (573)
T 1m8p_A          485 KFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDF---SKQSVRSIVHEII  561 (573)
T ss_dssp             HHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECT---TTSCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccccccccCCCCEEEEC---CCCCHHHHHHHHH
Confidence            7777776542 46779999999999999999988877778889999999999987778899998   7789999999999


Q ss_pred             HHHHhCCCcc
Q 023675          269 SYLDENGFLR  278 (279)
Q Consensus       269 ~~l~~~~~~~  278 (279)
                      ..|+++|+++
T Consensus       562 ~~l~~~~~~~  571 (573)
T 1m8p_A          562 LVLESQGFLE  571 (573)
T ss_dssp             HHHHHTTTTC
T ss_pred             HHHHhcCCcC
Confidence            9999999875

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.82  E-value=7.2e-20  Score=177.74  Aligned_cols=196  Identities=51%  Similarity=0.887  Sum_probs=148.0

Q ss_pred             CCeEEeecceeecCCcceecc----CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCccc
Q 023675           80 TNILWHKNSVDKRDRQQLLQQ----KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED  155 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~sl~i~----~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~  155 (279)
                      .++.|+...++..+|.....+    +|.+|+|+|++||||||+++.|+..|...+...+.+|+|.++..+.....|....
T Consensus        26 ~~~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~d  105 (630)
T 1x6v_B           26 TNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED  105 (630)
T ss_dssp             --------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHH
T ss_pred             ccccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhh
Confidence            578888877777777766565    8899999999999999999999999844445578899999988777666787777


Q ss_pred             HHHHHHHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhccChhhHHHHHhCCCCCCC
Q 023675          156 RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGF  233 (279)
Q Consensus       156 ~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~  233 (279)
                      +...++++.+++..+.+.|.+++.++.++.+..++.++.++...  +++.|+||+|.+.+.+|+.+++++..+.+++..+
T Consensus       106 ree~~r~i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~~~  185 (630)
T 1x6v_B          106 REENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF  185 (630)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----C
T ss_pred             hHHHHHHHHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHHHH
Confidence            77777777777766667788888776666555666677665432  4677999999999999999888887777777777


Q ss_pred             ccccCcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCcc
Q 023675          234 TGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR  278 (279)
Q Consensus       234 ~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~~  278 (279)
                      ...+..|+.+..++++||+   +..++++++++|++.|..+++++
T Consensus       186 ~~~~~~Ye~p~~~dlvIDt---s~~s~eevv~~Il~~L~~~~~ip  227 (630)
T 1x6v_B          186 TGIDSEYEKPEAPELVLKT---DSCDVNDCVQQVVELLQERDIVP  227 (630)
T ss_dssp             BTTTBCCCCCSSCSEEEET---TSSCHHHHHHHHHHHHHHTTSSC
T ss_pred             HHhhhhhcccCCCcEEEEC---CCCCHHHHHHHHHHHHHhcCccc
Confidence            7777788777678899998   77899999999999999887654

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.81  E-value=5.1e-20  Score=177.33  Aligned_cols=235  Identities=38%  Similarity=0.670  Sum_probs=158.0

Q ss_pred             CccccccCccccccccccc-cchhhhhhhhccccccccccc-ccccCCCCeEEee-cceeecCCcce--eccCCeEEEEE
Q 023675           34 GFFNVSRLRSLQPIKALEE-SATASVVQESAAISGNNLCQN-STVAKSTNILWHK-NSVDKRDRQQL--LQQKGCVIWIT  108 (279)
Q Consensus        34 ~~~~~~~~g~~~~id~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~-~~~~~~~~~sl--~i~~g~~i~lv  108 (279)
                      +|.-++.+|+|.++|+.++ .+      ....++|+.+... +. ......+|.. -.+....+..+  ..+.|.+|+|+
T Consensus       306 ~~~y~~~~g~~i~id~~~~~~~------~~~~iSgt~iR~~~L~-~g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~  378 (546)
T 2gks_A          306 ELVYVPELDQYVEINEAKKRNL------KYINISGTEIRENFLK-QGRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLT  378 (546)
T ss_dssp             CCEEETTTTEEECSCC---------------------CTHHHHT-TTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEE
T ss_pred             ceEEEcCCCeEEeeeccCCCCc------eeeecchhhhhhhhhc-CCCCCCccccchhHHHHHHHhhccccccceEEEcc
Confidence            7777799999999999997 31      1111344433221 11 1111112221 01211122222  34668899999


Q ss_pred             cCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHH
Q 023675          109 GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKD  188 (279)
Q Consensus       109 G~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~  188 (279)
                      |++||||||+++.|+..+...+....++|+|.+++.+..+..|...++..++..+..+...+...|..++.+...+.+..
T Consensus       379 G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~d~~~~~~~~  458 (546)
T 2gks_A          379 GLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVICALVSPYRSA  458 (546)
T ss_dssp             CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHH
T ss_pred             CCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHH
Confidence            99999999999999998865555578999999887777677787777766666665555555566766777766666667


Q ss_pred             HHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCCHHHHHHHHH
Q 023675          189 RDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVV  268 (279)
Q Consensus       189 r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il  268 (279)
                      |+.++.++..++++.|++++|.+.+.+|+.++++...+.+.+..+...+.+|+.+..++++||+   +..++++++++|+
T Consensus       459 r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~adivIDt---s~~s~eev~~~I~  535 (546)
T 2gks_A          459 RNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDT---TKLTPEESALKIL  535 (546)
T ss_dssp             HHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCSEEEET---TTSCHHHHHHHHH
T ss_pred             HHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhccccccCCcEEEEC---CCCCHHHHHHHHH
Confidence            7778888776666779999999999999987776554455677777788899877668899998   7789999999999


Q ss_pred             HHHHhCCCcc
Q 023675          269 SYLDENGFLR  278 (279)
Q Consensus       269 ~~l~~~~~~~  278 (279)
                      ..|+++|++.
T Consensus       536 ~~L~~~g~~~  545 (546)
T 2gks_A          536 EFLKKEGFIK  545 (546)
T ss_dssp             HHHHHHTSCC
T ss_pred             HHHHHcCCcc
Confidence            9999999875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.81  E-value=1.5e-19  Score=153.34  Aligned_cols=187  Identities=53%  Similarity=0.875  Sum_probs=132.7

Q ss_pred             ceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCcc--EEEEcCeecccccccCCCCCcccHHHHHHHHHH
Q 023675           88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNCRHGLNRDLSFKAEDRVENIRRIGE  165 (279)
Q Consensus        88 ~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G--~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~  165 (279)
                      .++...+..+.+++|.+++|+|++||||||+++.|++.+ .+..|  .+++|+|.++..+.....+....+..++..+..
T Consensus        11 ~~~~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l-~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~   89 (211)
T 1m7g_A           11 ALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQL-VRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAE   89 (211)
T ss_dssp             CCCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHH-HHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHH
T ss_pred             ccCHHHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHh-ccccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHH
Confidence            334445557788999999999999999999999999998 44456  899999998766655555665555556555544


Q ss_pred             HHHHHHhCCcchhcccCChHHHHHHHHHHhCC---C-----CCccEEEEeCCccchhccChhhHHHHHhCCCCCCCcccc
Q 023675          166 VAKLFADAGVICIACLISPYRKDRDACRSMLP---E-----GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID  237 (279)
Q Consensus       166 ~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~---~-----~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r  237 (279)
                      .+......+..++.++.+..+..++.++.+..   .     .+...|+||+|.+.+.+|..++++...+.+....+....
T Consensus        90 ~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~~~~~~~  169 (211)
T 1m7g_A           90 VAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGIS  169 (211)
T ss_dssp             HHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBTTT
T ss_pred             HHHHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchhhhhhhh
Confidence            33333345666666665544455666665433   1     134569999999999999876676666655554444444


Q ss_pred             CcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCcc
Q 023675          238 DPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR  278 (279)
Q Consensus       238 ~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~~  278 (279)
                      ..|+.+..++++||+   +..++++++++|+..+..+|++.
T Consensus       170 ~~y~~~~~~~~~IDt---~~~s~eev~~~I~~~l~~~~~~~  207 (211)
T 1m7g_A          170 APYEAPANPEVHVKN---YELPVQDAVKQIIDYLDTKGYLP  207 (211)
T ss_dssp             BCCCCCSSCSEEEEC---SSSCHHHHHHHHHHHHHHTTCSC
T ss_pred             hhccCCCCCeEEEEC---CCCCHHHHHHHHHHHHHHcCCcc
Confidence            455555556799998   67799999999999999988764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.80  E-value=9.3e-19  Score=144.48  Aligned_cols=175  Identities=54%  Similarity=0.928  Sum_probs=125.2

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA  179 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~  179 (279)
                      ++|++++|+|++||||||+++.|++.+...+...+.+|++.++..+....++..+....+++++...+..+.+.+..++.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCIT   82 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEEE
Confidence            47899999999999999999999999833233378889998877665556676666666666655555556556666665


Q ss_pred             ccCChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCC
Q 023675          180 CLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDC  257 (279)
Q Consensus       180 ~~~~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~  257 (279)
                      +..++....++.++.++.  ...+..++|++|.+.+.+|+.++++...+...+.....+...|+.+..++++|++   +.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vid~---~~  159 (179)
T 2pez_A           83 SFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKT---DS  159 (179)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBCCCCCSSCSEEEET---TT
T ss_pred             ecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhcccccccccCCccccCCCCCcEEEEC---CC
Confidence            555554333433333322  1234569999999999999987776666666655544445556656668899998   77


Q ss_pred             CCHHHHHHHHHHHHHhCCCc
Q 023675          258 PSPADMVETVVSYLDENGFL  277 (279)
Q Consensus       258 ~~~~e~~~~Il~~l~~~~~~  277 (279)
                      .++++++++|.+.++++|++
T Consensus       160 ~~~~~~~~~i~~~l~~~~~~  179 (179)
T 2pez_A          160 CDVNDCVQQVVELLQERDIV  179 (179)
T ss_dssp             SCHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHhcCC
Confidence            89999999999999988864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.79  E-value=4.7e-19  Score=161.84  Aligned_cols=140  Identities=18%  Similarity=0.247  Sum_probs=100.0

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc---c---cccCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---G---LNRDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~---~---~~~~~  149 (279)
                      .|++++++++|..     +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++..   .   ....+
T Consensus         4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~i~~~~~~~~~~~r~i   82 (359)
T 3fvq_A            4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE-QPDSGEISLSGKTIFSKNTNLPVRERRL   82 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEEEECCEECcccccccchhhCCE
Confidence            4678888888864     349999999999999999999999999999999 8999999999998721   0   11112


Q ss_pred             CCCccc-----------------------HHHHHHHHHHHHHHHHhCCc-chhcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          150 SFKAED-----------------------RVENIRRIGEVAKLFADAGV-ICIACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       150 ~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~~-~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                      +|.+++                       ..+..+++.++...+.-... ......+|++++|| .++|+++.+|++  +
T Consensus        83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l--L  160 (359)
T 3fvq_A           83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL--I  160 (359)
T ss_dssp             EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--E
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--E
Confidence            221110                       01112223333332211111 12355789999999 999999999998  9


Q ss_pred             EEeCCccchhccChhhHHH
Q 023675          205 FMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~  223 (279)
                      +||||++.|+......+..
T Consensus       161 LLDEPts~LD~~~r~~l~~  179 (359)
T 3fvq_A          161 LLDEPFSALDEQLRRQIRE  179 (359)
T ss_dssp             EEESTTTTSCHHHHHHHHH
T ss_pred             EEeCCcccCCHHHHHHHHH
Confidence            9999999999988776543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.79  E-value=3.7e-19  Score=153.98  Aligned_cols=140  Identities=16%  Similarity=0.154  Sum_probs=99.2

Q ss_pred             eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-------
Q 023675           82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------  145 (279)
Q Consensus        82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-------  145 (279)
                      +++++++++|..         +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...-       
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~   80 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD-KPTEGEVYIDNIKTNDLDDDELTKI   80 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHHH
Confidence            567788888852         349999999999999999999999999999999 899999999998874210       


Q ss_pred             -ccCCCCCcc--------cHHHHHH---------------HHHHHHHHHHhCCcch-----hcccCChHHHHH-HHHHHh
Q 023675          146 -NRDLSFKAE--------DRVENIR---------------RIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSM  195 (279)
Q Consensus       146 -~~~~~~~~~--------~~~~~~~---------------~v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l  195 (279)
                       ...++|.++        ...+.+.               ....+...+...++..     .+..+|+++++| .+|+++
T Consensus        81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral  160 (235)
T 3tif_A           81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL  160 (235)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence             000111111        1111110               0111223333334322     355789999999 999999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +.+|++  +++|||++.++......+++.
T Consensus       161 ~~~p~l--lllDEPts~LD~~~~~~i~~~  187 (235)
T 3tif_A          161 ANNPPI--ILADQPTWALDSKTGEKIMQL  187 (235)
T ss_dssp             TTCCSE--EEEESTTTTSCHHHHHHHHHH
T ss_pred             HcCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence            999998  999999999999887765543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.79  E-value=3.7e-19  Score=157.43  Aligned_cols=140  Identities=17%  Similarity=0.157  Sum_probs=100.7

Q ss_pred             CeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc------ccccC
Q 023675           81 NILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRD  148 (279)
Q Consensus        81 ~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~------~~~~~  148 (279)
                      .+++++++++|..+      .||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++..      .+...
T Consensus         7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~~~   85 (275)
T 3gfo_A            7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL-KPSSGRILFDNKPIDYSRKGIMKLRES   85 (275)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred             EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeEEEECCEECCcccccHHHHhCc
Confidence            47889999999642      29999999999999999999999999999999 8999999999998731      01111


Q ss_pred             CCCCccc---------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          149 LSFKAED---------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       149 ~~~~~~~---------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      ++|.++.         ..+.+..            ...+...+...++..    .+..+|+++++| .+|++++.+|++ 
T Consensus        86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l-  164 (275)
T 3gfo_A           86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV-  164 (275)
T ss_dssp             EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE-
T ss_pred             EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence            2221111         1111110            011222333334432    345689999999 999999999998 


Q ss_pred             EEEEeCCccchhccChhhHHH
Q 023675          203 EVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~  223 (279)
                       ++||||++.++......+++
T Consensus       165 -LlLDEPts~LD~~~~~~i~~  184 (275)
T 3gfo_A          165 -LILDEPTAGLDPMGVSEIMK  184 (275)
T ss_dssp             -EEEECTTTTCCHHHHHHHHH
T ss_pred             -EEEECccccCCHHHHHHHHH
Confidence             99999999999988776554

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.78  E-value=1.6e-18  Score=143.87  Aligned_cols=175  Identities=38%  Similarity=0.680  Sum_probs=126.3

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV  175 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  175 (279)
                      .+..++|.+++|+|++||||||+++.|++.+...+.-.+++|+|.++..+....++...++..++..+...+..+...+.
T Consensus         7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~   86 (186)
T 2yvu_A            7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGV   86 (186)
T ss_dssp             -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCC
Confidence            34556899999999999999999999999985433335678999887766666677776666666555555544445666


Q ss_pred             chhcccCChHHHHHHHHHHhCCC--CCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEcc
Q 023675          176 ICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQM  253 (279)
Q Consensus       176 ~~i~~~~~~~~~~r~~ar~l~~~--~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~  253 (279)
                      .++.+.....+..++.++.++..  ..++.||||+|.+.+.+|..++++.......+..+...+..|++|..++++||+ 
T Consensus        87 ~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~Id~-  165 (186)
T 2yvu_A           87 IVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQLVLDT-  165 (186)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCCCSSCSEEEET-
T ss_pred             EEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhcccCCCCCcEEEEC-
Confidence            66655555444555555554432  235669999999999999977766555555666666667777766557899998 


Q ss_pred             CCCCCCHHHHHHHHHHHHHh
Q 023675          254 GDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       254 ~~~~~~~~e~~~~Il~~l~~  273 (279)
                        +..++++++++|+..++.
T Consensus       166 --~~~~~~ev~~~I~~~l~~  183 (186)
T 2yvu_A          166 --ESNTIEHNVSYLYSLVKA  183 (186)
T ss_dssp             --TTSCHHHHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHHHHH
Confidence              778999999999998865

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.78  E-value=6.9e-19  Score=160.93  Aligned_cols=142  Identities=17%  Similarity=0.178  Sum_probs=102.5

Q ss_pred             CCeEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------
Q 023675           80 TNILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------  144 (279)
Q Consensus        80 ~~i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------  144 (279)
                      ..|++++++++|..         +.||++++|++++|+||||||||||+++|++++ .|++|.|+++|.++...      
T Consensus        23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~-~p~~G~I~i~G~~i~~~~~~~~~  101 (366)
T 3tui_C           23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEGSVLVDGQELTTLSESELT  101 (366)
T ss_dssp             CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECSSCCHHHHH
T ss_pred             ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHH
Confidence            46899999999853         349999999999999999999999999999999 89999999999987421      


Q ss_pred             -cccCCCCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675          145 -LNRDLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       145 -~~~~~~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                       ....++|.+++        -.+.+..            ...+..++...++..    ....+|++++|| .+||+++.+
T Consensus       102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~  181 (366)
T 3tui_C          102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN  181 (366)
T ss_dssp             HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTC
T ss_pred             HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence             11122222221        0111100            011222233333322    355689999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      |++  +++|||++.|+......+++.
T Consensus       182 P~l--LLlDEPTs~LD~~~~~~i~~l  205 (366)
T 3tui_C          182 PKV--LLCDQATSALDPATTRSILEL  205 (366)
T ss_dssp             CSE--EEEESTTTTSCHHHHHHHHHH
T ss_pred             CCE--EEEECCCccCCHHHHHHHHHH
Confidence            998  999999999999887775543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.78  E-value=2.7e-19  Score=160.47  Aligned_cols=143  Identities=17%  Similarity=0.187  Sum_probs=101.1

Q ss_pred             CCCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675           79 STNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD  148 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~  148 (279)
                      .+.|++++++|+|..+      .||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    +...
T Consensus        51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~G~~i~~~~~~~~r~~  129 (306)
T 3nh6_A           51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY-DISSGCIRIDGQDISQVTQASLRSH  129 (306)
T ss_dssp             SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS-CCSEEEEEETTEETTSBCHHHHHHT
T ss_pred             CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCcEEEECCEEcccCCHHHHhcc
Confidence            4579999999999642      39999999999999999999999999999999 89999999999988531    1111


Q ss_pred             CCCCcc-------cHHHHH------------HHHHHHH---HHHHhC--Ccc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675          149 LSFKAE-------DRVENI------------RRIGEVA---KLFADA--GVI----CIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       149 ~~~~~~-------~~~~~~------------~~v~~~~---~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      ++|.++       ..++.+            ....+.+   ......  |+.    ..+..+|+++++| .+||+++.+|
T Consensus       130 i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p  209 (306)
T 3nh6_A          130 IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAP  209 (306)
T ss_dssp             EEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             eEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCC
Confidence            111111       111111            1111111   111110  111    1234689999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHH
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++  ++||||++.++......+++.
T Consensus       210 ~i--LlLDEPts~LD~~~~~~i~~~  232 (306)
T 3nh6_A          210 GI--ILLDEATSALDTSNERAIQAS  232 (306)
T ss_dssp             SE--EEEECCSSCCCHHHHHHHHHH
T ss_pred             CE--EEEECCcccCCHHHHHHHHHH
Confidence            98  999999999999877765543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.78  E-value=7.3e-19  Score=161.70  Aligned_cols=140  Identities=16%  Similarity=0.126  Sum_probs=99.6

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~  153 (279)
                      .|++++++++|..     +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...-  ...+++.+
T Consensus         3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~~~~~~~~~r~ig~Vf   81 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-TITSGDLFIGEKRMNDTPPAERGVGMVF   81 (381)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC-CCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence            3677888888864     449999999999999999999999999999999 899999999999874211  11112111


Q ss_pred             cc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675          154 ED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (279)
Q Consensus       154 ~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~  208 (279)
                      ++        ..+++..            ...+..++...++..    ....+|++++|| +++|+++.+|++  ++|||
T Consensus        82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l--LLLDE  159 (381)
T 3rlf_A           82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDE  159 (381)
T ss_dssp             TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE--EEEES
T ss_pred             cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE--EEEEC
Confidence            10        1111100            011222233333322    355689999999 999999999998  99999


Q ss_pred             CccchhccChhhHHH
Q 023675          209 PLQVCEARDPKGLYK  223 (279)
Q Consensus       209 p~~~l~~R~~~~l~~  223 (279)
                      |++.|+......+..
T Consensus       160 Pts~LD~~~~~~l~~  174 (381)
T 3rlf_A          160 PLSNLDAALRVQMRI  174 (381)
T ss_dssp             TTTTSCHHHHHHHHH
T ss_pred             CCcCCCHHHHHHHHH
Confidence            999999988776544

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.77  E-value=2.5e-18  Score=146.75  Aligned_cols=141  Identities=19%  Similarity=0.225  Sum_probs=100.1

Q ss_pred             CCeEEeecceeecC----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc-
Q 023675           80 TNILWHKNSVDKRD----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-  154 (279)
Q Consensus        80 ~~i~~~~~~~~~~~----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~-  154 (279)
                      ..+++++++++|..    +.||++++|++++|+||||||||||+++|+|++ .|.+|.|.++|.++. .....++|.++ 
T Consensus         9 ~~l~~~~ls~~y~~~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~-~~~~~i~~v~q~   86 (214)
T 1sgw_A            9 SKLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVPIT-KVKGKIFFLPEE   86 (214)
T ss_dssp             CEEEEEEEEEESSSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGG-GGGGGEEEECSS
T ss_pred             ceEEEEEEEEEeCCeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEhh-hhcCcEEEEeCC
Confidence            45788888888854    338999999999999999999999999999999 899999999998763 11111111111 


Q ss_pred             -------cHHHHHHHH----------HHHHHHHHhCCcc---hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccch
Q 023675          155 -------DRVENIRRI----------GEVAKLFADAGVI---CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (279)
Q Consensus       155 -------~~~~~~~~v----------~~~~~~~~~~~~~---~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l  213 (279)
                             ...+.+...          ..+..++...++.   ..+..+|+++++| .++++++.+|++  ++||||++.+
T Consensus        87 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~l--llLDEPts~L  164 (214)
T 1sgw_A           87 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI--YVLDDPVVAI  164 (214)
T ss_dssp             CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE--EEEESTTTTS
T ss_pred             CcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCcCC
Confidence                   111111110          1122223333332   2344688999999 999999999998  9999999999


Q ss_pred             hccChhhHHHH
Q 023675          214 EARDPKGLYKL  224 (279)
Q Consensus       214 ~~R~~~~l~~~  224 (279)
                      +......+++.
T Consensus       165 D~~~~~~l~~~  175 (214)
T 1sgw_A          165 DEDSKHKVLKS  175 (214)
T ss_dssp             CTTTHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99887775543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.77  E-value=1.4e-18  Score=149.25  Aligned_cols=140  Identities=24%  Similarity=0.227  Sum_probs=99.8

Q ss_pred             eEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cc-cC
Q 023675           82 ILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LN-RD  148 (279)
Q Consensus        82 i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~-~~  148 (279)
                      +++++++++|..+     .||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...       .. ..
T Consensus         5 l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~   83 (224)
T 2pcj_A            5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD-APTEGKVFLEGKEVDYTNEKELSLLRNRK   83 (224)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS-CCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred             EEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence            6788888888643     39999999999999999999999999999999 89999999999887421       00 11


Q ss_pred             CCCCcc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          149 LSFKAE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       149 ~~~~~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      ++|.++        ...+.+..            ...+..++...++..    ....+|+++++| .++++++.+|++  
T Consensus        84 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l--  161 (224)
T 2pcj_A           84 LGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL--  161 (224)
T ss_dssp             EEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE--
T ss_pred             EEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE--
Confidence            111111        11111110            011223333344322    345689999999 999999999998  


Q ss_pred             EEEeCCccchhccChhhHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++||||++.++....+.+++.
T Consensus       162 llLDEPt~~LD~~~~~~~~~~  182 (224)
T 2pcj_A          162 LFADEPTGNLDSANTKRVMDI  182 (224)
T ss_dssp             EEEESTTTTCCHHHHHHHHHH
T ss_pred             EEEeCCCCCCCHHHHHHHHHH
Confidence            999999999999887765543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.76  E-value=2.9e-18  Score=150.25  Aligned_cols=142  Identities=15%  Similarity=0.160  Sum_probs=101.5

Q ss_pred             CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCC
Q 023675           80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSF  151 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~  151 (279)
                      +.+++++++++|..+     .||++++|++++|+||||||||||+++|+|++ .|.+|.|+++|.++...   ....++|
T Consensus        14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~i~~   92 (256)
T 1vpl_A           14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI-KPSSGIVTVFGKNVVEEPHEVRKLISY   92 (256)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred             CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCccHHHHhhcEEE
Confidence            568899999999643     39999999999999999999999999999999 89999999999887421   1111111


Q ss_pred             Ccc--------cHHHHHHHH------------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEE
Q 023675          152 KAE--------DRVENIRRI------------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (279)
Q Consensus       152 ~~~--------~~~~~~~~v------------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~l  206 (279)
                      .++        ...+.+...            ..+..++...++..    .+..+|+++++| .++++++.+|++  ++|
T Consensus        93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l--llL  170 (256)
T 1vpl_A           93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL--AIL  170 (256)
T ss_dssp             ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE--EEE
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence            111        111111110            11222233334322    345689999999 999999999998  999


Q ss_pred             eCCccchhccChhhHHHH
Q 023675          207 DVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       207 d~p~~~l~~R~~~~l~~~  224 (279)
                      |||++.++......+++.
T Consensus       171 DEPts~LD~~~~~~l~~~  188 (256)
T 1vpl_A          171 DEPTSGLDVLNAREVRKI  188 (256)
T ss_dssp             ESTTTTCCHHHHHHHHHH
T ss_pred             eCCccccCHHHHHHHHHH
Confidence            999999999887765543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.76  E-value=1.6e-18  Score=150.38  Aligned_cols=141  Identities=16%  Similarity=0.193  Sum_probs=98.7

Q ss_pred             CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675           81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS  150 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~  150 (279)
                      .+++++++++|..+     .||++++|++++|+||||||||||+++|+|++ .|++|.|.++|.++...     ....++
T Consensus         6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~   84 (240)
T 1ji0_A            6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV-RAQKGKIIFNGQDITNKPAHVINRMGIA   84 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred             eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCCHHHHHhCCEE
Confidence            47888888888653     39999999999999999999999999999999 89999999999887321     001111


Q ss_pred             CCcc--------cHHHH--------------HHHHHHHHHHHH--hCCcchhcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675          151 FKAE--------DRVEN--------------IRRIGEVAKLFA--DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVF  205 (279)
Q Consensus       151 ~~~~--------~~~~~--------------~~~v~~~~~~~~--~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~  205 (279)
                      |.++        ...+.              ...+.++...+.  ..-....+..+|+++++| .++++++.+|++  ++
T Consensus        85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l--ll  162 (240)
T 1ji0_A           85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL--LM  162 (240)
T ss_dssp             EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE--EE
T ss_pred             EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EE
Confidence            1111        00010              111111211110  111122355689999999 999999999998  99


Q ss_pred             EeCCccchhccChhhHHHH
Q 023675          206 MDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~~  224 (279)
                      ||||++.++....+.+++.
T Consensus       163 LDEPts~LD~~~~~~l~~~  181 (240)
T 1ji0_A          163 MDEPSLGLAPILVSEVFEV  181 (240)
T ss_dssp             EECTTTTCCHHHHHHHHHH
T ss_pred             EcCCcccCCHHHHHHHHHH
Confidence            9999999999887765543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.76  E-value=1.7e-18  Score=152.28  Aligned_cols=141  Identities=21%  Similarity=0.217  Sum_probs=100.6

Q ss_pred             CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc------------
Q 023675           81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------------  143 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~------------  143 (279)
                      .+++++++++|..+     .||++++|++++|+||||||||||+++|+|++ .|.+|.|+++|.++..            
T Consensus         6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~   84 (262)
T 1b0u_A            6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGAIIVNGQNINLVRDKDGQLKVAD   84 (262)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEccccccccccccccC
Confidence            47888998888643     39999999999999999999999999999999 8999999999988741            


Q ss_pred             -----ccccCCCCCcc--------cHHHHHHH-------------HHHHHHHHHhCCcchh-----cccCChHHHHH-HH
Q 023675          144 -----GLNRDLSFKAE--------DRVENIRR-------------IGEVAKLFADAGVICI-----ACLISPYRKDR-DA  191 (279)
Q Consensus       144 -----~~~~~~~~~~~--------~~~~~~~~-------------v~~~~~~~~~~~~~~i-----~~~~~~~~~~r-~~  191 (279)
                           .....++|.++        ...+.+..             ...+..++...++...     +..+|+++++| .+
T Consensus        85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l  164 (262)
T 1b0u_A           85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  164 (262)
T ss_dssp             HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred             hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence                 00111111111        11111110             0112233344444332     44689999999 99


Q ss_pred             HHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       192 ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +++++.+|++  ++||||++.++......+.+.
T Consensus       165 AraL~~~p~l--llLDEPts~LD~~~~~~~~~~  195 (262)
T 1b0u_A          165 ARALAMEPDV--LLFDEPTSALDPELVGEVLRI  195 (262)
T ss_dssp             HHHHHTCCSE--EEEESTTTTSCHHHHHHHHHH
T ss_pred             HHHHhcCCCE--EEEeCCCccCCHHHHHHHHHH
Confidence            9999999998  999999999999887765543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.76  E-value=3.3e-18  Score=156.23  Aligned_cols=142  Identities=15%  Similarity=0.179  Sum_probs=102.2

Q ss_pred             CCeEEeecceee-cCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCC
Q 023675           80 TNILWHKNSVDK-RDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSF  151 (279)
Q Consensus        80 ~~i~~~~~~~~~-~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~  151 (279)
                      ..+++++++++| ...     .||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...  ....++|
T Consensus        13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~   91 (355)
T 1z47_A           13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE-RPTKGDVWIGGKRVTDLPPQKRNVGL   91 (355)
T ss_dssp             EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred             ceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECCcCChhhCcEEE
Confidence            458889999999 543     39999999999999999999999999999999 89999999999887421  1111222


Q ss_pred             Cccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEE
Q 023675          152 KAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (279)
Q Consensus       152 ~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~l  206 (279)
                      .+++        ..+.+..            ...+..++...++..    ....+|++++|| .++|+++.+|++  ++|
T Consensus        92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLL  169 (355)
T 1z47_A           92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQV--LLF  169 (355)
T ss_dssp             ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEE
T ss_pred             EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence            2211        1111110            011222333334432    345689999999 999999999998  999


Q ss_pred             eCCccchhccChhhHHHH
Q 023675          207 DVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       207 d~p~~~l~~R~~~~l~~~  224 (279)
                      |||++.|+......+.+.
T Consensus       170 DEP~s~LD~~~r~~l~~~  187 (355)
T 1z47_A          170 DEPFAAIDTQIRRELRTF  187 (355)
T ss_dssp             ESTTCCSSHHHHHHHHHH
T ss_pred             eCCcccCCHHHHHHHHHH
Confidence            999999999887765543

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.76  E-value=2.9e-18  Score=156.71  Aligned_cols=140  Identities=17%  Similarity=0.170  Sum_probs=99.3

Q ss_pred             eEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-------cccc
Q 023675           82 ILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNR  147 (279)
Q Consensus        82 i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-------~~~~  147 (279)
                      +++++++++|..       +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++..       ....
T Consensus         4 l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~~~~r   82 (353)
T 1oxx_K            4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD-VPSTGELYFDDRLVASNGKLIVPPEDR   82 (353)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS-CCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECcccccccCChhhC
Confidence            677788777754       349999999999999999999999999999999 8999999999987632       0111


Q ss_pred             CCCCCccc--------HHHHHH------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675          148 DLSFKAED--------RVENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI  202 (279)
Q Consensus       148 ~~~~~~~~--------~~~~~~------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i  202 (279)
                      .++|.+++        ..+.+.            ....+..++...++..    ....+|+++++| .++|+++.+|++ 
T Consensus        83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l-  161 (353)
T 1oxx_K           83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL-  161 (353)
T ss_dssp             CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE-
T ss_pred             CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE-
Confidence            11111110        011100            0011222333334322    345689999999 999999999998 


Q ss_pred             EEEEeCCccchhccChhhHHHH
Q 023675          203 EVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                       ++||||++.++......+.+.
T Consensus       162 -LLLDEP~s~LD~~~r~~l~~~  182 (353)
T 1oxx_K          162 -LLLDEPFSNLDARMRDSARAL  182 (353)
T ss_dssp             -EEEESTTTTSCGGGHHHHHHH
T ss_pred             -EEEECCcccCCHHHHHHHHHH
Confidence             999999999999988775543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.76  E-value=4.1e-18  Score=156.04  Aligned_cols=140  Identities=18%  Similarity=0.141  Sum_probs=100.0

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE  154 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~  154 (279)
                      +++++++++|..     +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...  ....++|.++
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q   82 (362)
T 2it1_A            4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY-KPTSGKIYFDEKDVTELPPKDRNVGLVFQ   82 (362)
T ss_dssp             EEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred             EEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCceEEEECCEECCcCCHhHCcEEEEec
Confidence            678888888864     349999999999999999999999999999999 89999999999887421  0111121111


Q ss_pred             --------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675          155 --------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (279)
Q Consensus       155 --------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p  209 (279)
                              ...+.+..            ...+..++...++..    ....+|++++|| .++|+++.+|++  ++||||
T Consensus        83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLLDEP  160 (362)
T 2it1_A           83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV--LLLDEP  160 (362)
T ss_dssp             TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE--EEEESG
T ss_pred             CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECc
Confidence                    11111110            011222333333322    345689999999 999999999998  999999


Q ss_pred             ccchhccChhhHHHH
Q 023675          210 LQVCEARDPKGLYKL  224 (279)
Q Consensus       210 ~~~l~~R~~~~l~~~  224 (279)
                      ++.|+......+...
T Consensus       161 ~s~LD~~~r~~l~~~  175 (362)
T 2it1_A          161 LSNLDALLRLEVRAE  175 (362)
T ss_dssp             GGGSCHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHH
Confidence            999999887765543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.76  E-value=1.1e-17  Score=147.06  Aligned_cols=141  Identities=19%  Similarity=0.193  Sum_probs=101.1

Q ss_pred             CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---cc---cccCC
Q 023675           81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HG---LNRDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~~---~~~~~  149 (279)
                      .+++++++++|..+     .||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++.   ..   ....+
T Consensus        24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~i  102 (263)
T 2olj_A           24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE-DFDEGEIIIDGINLKAKDTNLNKVREEV  102 (263)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC-CCCCcEEEECCEECCCccccHHHHhCcE
Confidence            58999999999643     39999999999999999999999999999999 899999999998873   00   01111


Q ss_pred             CCCcc--------cHHHHHHH-------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          150 SFKAE--------DRVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       150 ~~~~~--------~~~~~~~~-------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      +|.++        ...+.+..             ...+..++...++..    .+..+|+++++| .++++++.+|++  
T Consensus       103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l--  180 (263)
T 2olj_A          103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI--  180 (263)
T ss_dssp             EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE--
Confidence            11111        11111110             011223333444432    345689999999 999999999998  


Q ss_pred             EEEeCCccchhccChhhHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++||||++.++......+.+.
T Consensus       181 llLDEPts~LD~~~~~~~~~~  201 (263)
T 2olj_A          181 MLFDEPTSALDPEMVGEVLSV  201 (263)
T ss_dssp             EEEESTTTTSCHHHHHHHHHH
T ss_pred             EEEeCCcccCCHHHHHHHHHH
Confidence            999999999999887765543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.76  E-value=3.7e-18  Score=157.01  Aligned_cols=139  Identities=16%  Similarity=0.112  Sum_probs=98.5

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc------c--cccC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------G--LNRD  148 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~------~--~~~~  148 (279)
                      +++++++++|..     +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++..      .  ....
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~~~~~~~~~~~~~r~   82 (372)
T 1g29_1            4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE-EPSRGQIYIGDKLVADPEKGIFVPPKDRD   82 (372)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred             EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC-CCCccEEEECCEECccccccccCCHhHCC
Confidence            677788888754     349999999999999999999999999999999 8999999999988643      1  0111


Q ss_pred             CCCCcc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          149 LSFKAE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       149 ~~~~~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      ++|.++        ...+.+..            ...+..++...++..    ....+|+++++| .++|+++.+|++  
T Consensus        83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--  160 (372)
T 1g29_1           83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV--  160 (372)
T ss_dssp             EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE--
T ss_pred             EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCE--
Confidence            222111        11111110            011122222223322    345689999999 999999999998  


Q ss_pred             EEEeCCccchhccChhhHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~  223 (279)
                      ++||||++.|+......+..
T Consensus       161 LLLDEP~s~LD~~~r~~l~~  180 (372)
T 1g29_1          161 FLMDEPLSNLDAKLRVRMRA  180 (372)
T ss_dssp             EEEECTTTTSCHHHHHHHHH
T ss_pred             EEECCCCccCCHHHHHHHHH
Confidence            99999999999988776554

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.75  E-value=6.2e-18  Score=147.35  Aligned_cols=142  Identities=19%  Similarity=0.254  Sum_probs=98.4

Q ss_pred             CCeEEeecceeec--CC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675           80 TNILWHKNSVDKR--DR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD  148 (279)
Q Consensus        80 ~~i~~~~~~~~~~--~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~  148 (279)
                      .+|++++++++|.  .+     .||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    +...
T Consensus         6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~i~g~~~~~~~~~~~~~~   84 (247)
T 2ff7_A            6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-IPENGQVLIDGHDLALADPNWLRRQ   84 (247)
T ss_dssp             EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHH
T ss_pred             CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHHhc
Confidence            5689999999992  22     29999999999999999999999999999999 89999999999887421    0000


Q ss_pred             CCCCcc-------cHHHHH---------HHHHHHH------HHHHhC--Cc----chhcccCChHHHHH-HHHHHhCCCC
Q 023675          149 LSFKAE-------DRVENI---------RRIGEVA------KLFADA--GV----ICIACLISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       149 ~~~~~~-------~~~~~~---------~~v~~~~------~~~~~~--~~----~~i~~~~~~~~~~r-~~ar~l~~~~  199 (279)
                      ++|.++       ...+.+         ..+.+..      ..+...  ++    ...+..+|+++++| .++++++.+|
T Consensus        85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p  164 (247)
T 2ff7_A           85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP  164 (247)
T ss_dssp             EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            111000       111111         0111111      111110  10    11235689999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHH
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++  ++||||++.++....+.+++.
T Consensus       165 ~l--llLDEPts~LD~~~~~~i~~~  187 (247)
T 2ff7_A          165 KI--LIFDEATSALDYESEHVIMRN  187 (247)
T ss_dssp             SE--EEECCCCSCCCHHHHHHHHHH
T ss_pred             CE--EEEeCCcccCCHHHHHHHHHH
Confidence            98  999999999999887775543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.75  E-value=3.7e-18  Score=156.19  Aligned_cols=139  Identities=16%  Similarity=0.074  Sum_probs=98.9

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE  154 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~  154 (279)
                      +++++++++|.+     +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...  ....++|.++
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q   82 (359)
T 2yyz_A            4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY-KPTSGEIYFDDVLVNDIPPKYREVGMVFQ   82 (359)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred             EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC-CCCccEEEECCEECCCCChhhCcEEEEec
Confidence            677888888854     349999999999999999999999999999999 89999999999887421  0111111111


Q ss_pred             --------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675          155 --------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP  209 (279)
Q Consensus       155 --------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p  209 (279)
                              ...+.+..            ...+..++...++..    ....+|+++++| .++|+++.+|++  ++||||
T Consensus        83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l--LLLDEP  160 (359)
T 2yyz_A           83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKV--LLFDEP  160 (359)
T ss_dssp             SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEEEST
T ss_pred             CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECC
Confidence                    01111100            011222333334322    345689999999 999999999998  999999


Q ss_pred             ccchhccChhhHHH
Q 023675          210 LQVCEARDPKGLYK  223 (279)
Q Consensus       210 ~~~l~~R~~~~l~~  223 (279)
                      ++.|+......+.+
T Consensus       161 ~s~LD~~~r~~l~~  174 (359)
T 2yyz_A          161 LSNLDANLRMIMRA  174 (359)
T ss_dssp             TTTSCHHHHHHHHH
T ss_pred             cccCCHHHHHHHHH
Confidence            99999988776554

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.75  E-value=2.8e-18  Score=151.10  Aligned_cols=141  Identities=18%  Similarity=0.156  Sum_probs=99.3

Q ss_pred             CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc----------
Q 023675           81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----------  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~----------  145 (279)
                      .+++++++++|..+     .||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...-          
T Consensus        11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~i~~   89 (266)
T 4g1u_C           11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL-SPSHGECHLLGQNLNSWQPKALARTRAV   89 (266)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS-CCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred             eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECCcCCHHHHhheEEE
Confidence            47888888888653     39999999999999999999999999999999 899999999999875310          


Q ss_pred             -ccCCCC-CcccHHHHHH----------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCC------CCCcc
Q 023675          146 -NRDLSF-KAEDRVENIR----------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLP------EGDFI  202 (279)
Q Consensus       146 -~~~~~~-~~~~~~~~~~----------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~------~~~~i  202 (279)
                       .....+ ......+.+.          ....+...+...++..    ....+|+++++| .++++++.      +|++ 
T Consensus        90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l-  168 (266)
T 4g1u_C           90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW-  168 (266)
T ss_dssp             ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE-
T ss_pred             EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE-
Confidence             000000 0000111110          0011222233333322    345689999999 99999998      8888 


Q ss_pred             EEEEeCCccchhccChhhHHHH
Q 023675          203 EVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       203 ~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                       ++||||++.++......+++.
T Consensus       169 -LllDEPts~LD~~~~~~i~~~  189 (266)
T 4g1u_C          169 -LFLDEPTSALDLYHQQHTLRL  189 (266)
T ss_dssp             -EEECCCCSSCCHHHHHHHHHH
T ss_pred             -EEEeCccccCCHHHHHHHHHH
Confidence             999999999999887765543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.75  E-value=6.3e-18  Score=148.13  Aligned_cols=141  Identities=16%  Similarity=0.143  Sum_probs=100.1

Q ss_pred             CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675           81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS  150 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~  150 (279)
                      .+++++++++|..+     .||++++|++++|+||||||||||+++|+|++ .|++|.|.++|.++...     ....++
T Consensus         7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~   85 (257)
T 1g6h_A            7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KADEGRVYFENKDITNKEPAELYHYGIV   85 (257)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred             EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence            47888998888643     39999999999999999999999999999999 89999999999887321     011111


Q ss_pred             CCccc--------HHHHH-------------------------HHHHHHHHHHHhCCcch----hcccCChHHHHH-HHH
Q 023675          151 FKAED--------RVENI-------------------------RRIGEVAKLFADAGVIC----IACLISPYRKDR-DAC  192 (279)
Q Consensus       151 ~~~~~--------~~~~~-------------------------~~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~a  192 (279)
                      |.+++        ..+.+                         .....+..++...++..    .+..+|+++++| .++
T Consensus        86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA  165 (257)
T 1g6h_A           86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG  165 (257)
T ss_dssp             ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHH
Confidence            11110        00000                         00011222333334422    345689999999 999


Q ss_pred             HHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       193 r~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++++.+|++  ++||||++.++....+.+++.
T Consensus       166 raL~~~p~l--llLDEPts~LD~~~~~~l~~~  195 (257)
T 1g6h_A          166 RALMTNPKM--IVMDEPIAGVAPGLAHDIFNH  195 (257)
T ss_dssp             HHHHTCCSE--EEEESTTTTCCHHHHHHHHHH
T ss_pred             HHHHcCCCE--EEEeCCccCCCHHHHHHHHHH
Confidence            999999998  999999999999887765543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.74  E-value=1.2e-17  Score=144.90  Aligned_cols=139  Identities=17%  Similarity=0.194  Sum_probs=98.9

Q ss_pred             eEEeecceeec---CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCccc-
Q 023675           82 ILWHKNSVDKR---DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAED-  155 (279)
Q Consensus        82 i~~~~~~~~~~---~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~~-  155 (279)
                      +++++++++|.   ++.||++++ ++++|+||||||||||+++|+|++ .|++|.|.++|.++...  ....++|.++. 
T Consensus         2 l~~~~l~~~y~~~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~   79 (240)
T 2onk_A            2 FLKVRAEKRLGNFRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV-KPDRGEVRLNGADITPLPPERRGIGFVPQDY   79 (240)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCTTTSCCBCCCSSC
T ss_pred             EEEEEEEEEeCCEEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCchhhCcEEEEcCCC
Confidence            56778888884   345999999 999999999999999999999999 89999999999887321  11122222211 


Q ss_pred             -------HHHHHH----------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccch
Q 023675          156 -------RVENIR----------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (279)
Q Consensus       156 -------~~~~~~----------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l  213 (279)
                             ..+.+.          ....+..++...++..    ....+|+++++| .++++++.+|++  ++||||++.+
T Consensus        80 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l--llLDEPts~L  157 (240)
T 2onk_A           80 ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL--LLLDEPLSAV  157 (240)
T ss_dssp             CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS--BEEESTTSSC
T ss_pred             ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcccC
Confidence                   011110          0111223334444422    345689999999 999999999999  9999999999


Q ss_pred             hccChhhHHHH
Q 023675          214 EARDPKGLYKL  224 (279)
Q Consensus       214 ~~R~~~~l~~~  224 (279)
                      +....+.+++.
T Consensus       158 D~~~~~~~~~~  168 (240)
T 2onk_A          158 DLKTKGVLMEE  168 (240)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99887765543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.74  E-value=4.5e-18  Score=150.77  Aligned_cols=141  Identities=18%  Similarity=0.161  Sum_probs=100.7

Q ss_pred             CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc--cc----cccCC
Q 023675           81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--HG----LNRDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~--~~----~~~~~  149 (279)
                      .+++++++++|..+     .||++++|++++|+|+||||||||+++|+|++ .|++|.|.++|.++.  ..    ....+
T Consensus        21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~i   99 (279)
T 2ihy_A           21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE-PATSGTVNLFGKMPGKVGYSAETVRQHI   99 (279)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred             eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCeEEEECCEEcccccCCHHHHcCcE
Confidence            48899999999653     39999999999999999999999999999999 899999999998764  10    11111


Q ss_pred             CCCccc----------HHHHHH----------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675          150 SFKAED----------RVENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       150 ~~~~~~----------~~~~~~----------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      +|.+++          ..+.+.                ....+..++...++..    .+..+|+++++| .++++++.+
T Consensus       100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~  179 (279)
T 2ihy_A          100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQ  179 (279)
T ss_dssp             EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred             EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCC
Confidence            111111          011100                0111223333344432    345689999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      |++  ++||||++.++....+.+++.
T Consensus       180 p~l--LlLDEPts~LD~~~~~~l~~~  203 (279)
T 2ihy_A          180 PQV--LILDEPAAGLDFIARESLLSI  203 (279)
T ss_dssp             CSE--EEEESTTTTCCHHHHHHHHHH
T ss_pred             CCE--EEEeCCccccCHHHHHHHHHH
Confidence            998  999999999999887765543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.74  E-value=5e-18  Score=156.00  Aligned_cols=141  Identities=17%  Similarity=0.132  Sum_probs=99.9

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~  153 (279)
                      .+++++++++|..     +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...  ....++|.+
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~   89 (372)
T 1v43_A           11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE-EPTEGRIYFGDRDVTYLPPKDRNISMVF   89 (372)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCceEEEECCEECCCCChhhCcEEEEe
Confidence            4788888888864     349999999999999999999999999999999 89999999999887421  011122211


Q ss_pred             ccH--------HHHHH------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675          154 EDR--------VENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV  208 (279)
Q Consensus       154 ~~~--------~~~~~------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~  208 (279)
                      ++.        .+.+.            ....+..++...++..    ....+|++++|| .++|+++.+|++  ++|||
T Consensus        90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLLDE  167 (372)
T 1v43_A           90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV--LLMDE  167 (372)
T ss_dssp             C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE--EEEES
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence            110        00000            0011222333334322    344688899999 999999999998  99999


Q ss_pred             CccchhccChhhHHHH
Q 023675          209 PLQVCEARDPKGLYKL  224 (279)
Q Consensus       209 p~~~l~~R~~~~l~~~  224 (279)
                      |++.|+......+.+.
T Consensus       168 P~s~LD~~~r~~l~~~  183 (372)
T 1v43_A          168 PLSNLDAKLRVAMRAE  183 (372)
T ss_dssp             TTTTSCHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHH
Confidence            9999999887765543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.74  E-value=4.7e-18  Score=147.75  Aligned_cols=141  Identities=17%  Similarity=0.175  Sum_probs=97.5

Q ss_pred             eEEeecceeec-CC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675           82 ILWHKNSVDKR-DR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF  151 (279)
Q Consensus        82 i~~~~~~~~~~-~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~  151 (279)
                      +++++++++|. .+     .||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...    +...++|
T Consensus         2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (243)
T 1mv5_A            2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-QPTAGEITIDGQPIDNISLENWRSQIGF   80 (243)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-CCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence            56788888883 22     38999999999999999999999999999999 89999999999887321    1111222


Q ss_pred             Ccc-------cHHHHH----------HHHHHHHHHHHhCCcc------------hhcccCChHHHHH-HHHHHhCCCCCc
Q 023675          152 KAE-------DRVENI----------RRIGEVAKLFADAGVI------------CIACLISPYRKDR-DACRSMLPEGDF  201 (279)
Q Consensus       152 ~~~-------~~~~~~----------~~v~~~~~~~~~~~~~------------~i~~~~~~~~~~r-~~ar~l~~~~~~  201 (279)
                      .++       ...+.+          ..+.+....+.-....            ..+..+|+++++| .++++++.+|++
T Consensus        81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l  160 (243)
T 1mv5_A           81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI  160 (243)
T ss_dssp             ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence            111       011110          1111222111111111            1234689999999 999999999998


Q ss_pred             cEEEEeCCccchhccChhhHHHHH
Q 023675          202 IEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       202 i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                        ++||||++.++....+.+++.+
T Consensus       161 --llLDEPts~LD~~~~~~i~~~l  182 (243)
T 1mv5_A          161 --LMLDEATASLDSESESMVQKAL  182 (243)
T ss_dssp             --EEEECCSCSSCSSSCCHHHHHH
T ss_pred             --EEEECCcccCCHHHHHHHHHHH
Confidence              9999999999998887765543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.74  E-value=9.9e-18  Score=152.78  Aligned_cols=140  Identities=17%  Similarity=0.199  Sum_probs=99.3

Q ss_pred             eEEeecceeecC----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc-
Q 023675           82 ILWHKNSVDKRD----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE-  154 (279)
Q Consensus        82 i~~~~~~~~~~~----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~-  154 (279)
                      +++++++++|..    +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...  ....++|.++ 
T Consensus         2 l~~~~l~~~y~~~~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~   80 (348)
T 3d31_A            2 IEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH-VPDSGRILLDGKDVTDLSPEKHDIAFVYQN   80 (348)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS-CCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred             EEEEEEEEEECCEEEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC-CCCCcEEEECCEECCCCchhhCcEEEEecC
Confidence            456777777753    459999999999999999999999999999999 89999999999887421  0111222111 


Q ss_pred             -------cHHHHHHHH---------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccch
Q 023675          155 -------DRVENIRRI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (279)
Q Consensus       155 -------~~~~~~~~v---------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l  213 (279)
                             ...+.+...         ..+...+...++..    ....+|+++++| .++|+++.+|++  ++||||++.+
T Consensus        81 ~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~l--LLLDEP~s~L  158 (348)
T 3d31_A           81 YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI--LLLDEPLSAL  158 (348)
T ss_dssp             CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE--EEEESSSTTS
T ss_pred             cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECccccC
Confidence                   111111110         11222333333322    355689999999 999999999998  9999999999


Q ss_pred             hccChhhHHHH
Q 023675          214 EARDPKGLYKL  224 (279)
Q Consensus       214 ~~R~~~~l~~~  224 (279)
                      +......+.+.
T Consensus       159 D~~~~~~l~~~  169 (348)
T 3d31_A          159 DPRTQENAREM  169 (348)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99887765543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.73  E-value=3.6e-17  Score=144.39  Aligned_cols=144  Identities=18%  Similarity=0.182  Sum_probs=101.7

Q ss_pred             CCeEEeecceeecC---C-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           80 TNILWHKNSVDKRD---R-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        80 ~~i~~~~~~~~~~~---~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      ..+++++++++|..   +     .||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...    +..
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~   93 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY-QPTGGKVLLDGEPLVQYDHHYLHT   93 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGGGBCHHHHHH
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEcccCCHHHHhc
Confidence            46899999999964   2     28999999999999999999999999999999 89999999999887421    000


Q ss_pred             CCCCCc-------ccHHHHHH----------HH------HHHHHHHHhC--Cc----chhcccCChHHHHH-HHHHHhCC
Q 023675          148 DLSFKA-------EDRVENIR----------RI------GEVAKLFADA--GV----ICIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       148 ~~~~~~-------~~~~~~~~----------~v------~~~~~~~~~~--~~----~~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      .++|.+       ....+.+.          .+      ..+...+...  ++    ...+..+|+++++| .++|+++.
T Consensus        94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~  173 (271)
T 2ixe_A           94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR  173 (271)
T ss_dssp             HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred             cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence            011100       01111110          00      0011122221  22    12345689999999 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +|++  ++||||++.++....+.+++.+.
T Consensus       174 ~p~l--llLDEPts~LD~~~~~~i~~~l~  200 (271)
T 2ixe_A          174 KPRL--LILDNATSALDAGNQLRVQRLLY  200 (271)
T ss_dssp             CCSE--EEEESTTTTCCHHHHHHHHHHHH
T ss_pred             CCCE--EEEECCccCCCHHHHHHHHHHHH
Confidence            9998  99999999999988887776554

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.73  E-value=1.7e-17  Score=144.76  Aligned_cols=142  Identities=18%  Similarity=0.103  Sum_probs=96.0

Q ss_pred             eEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHc--cccCCccEEEEcCeecccc-----cccCC
Q 023675           82 ILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQA--LHWRGKLTYILDGDNCRHG-----LNRDL  149 (279)
Q Consensus        82 i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~--l~~~~~G~i~ldgd~i~~~-----~~~~~  149 (279)
                      +++++++++|..+     .||++++|++++|+|+||||||||+++|+|+  + .|.+|.|+++|.++...     ....+
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~~~~~~~~~~~~~~i   82 (250)
T 2d2e_A            4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEY-TVERGEILLDGENILELSPDERARKGL   82 (250)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred             EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCceEEEECCEECCCCCHHHHHhCcE
Confidence            6788888888643     3999999999999999999999999999998  6 78899999999887421     01112


Q ss_pred             CCCccc--------HHHHHHH---------------HHHHHHHHHhCCc-ch----hccc-CChHHHHH-HHHHHhCCCC
Q 023675          150 SFKAED--------RVENIRR---------------IGEVAKLFADAGV-IC----IACL-ISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       150 ~~~~~~--------~~~~~~~---------------v~~~~~~~~~~~~-~~----i~~~-~~~~~~~r-~~ar~l~~~~  199 (279)
                      ++.+++        ..+.+..               ...+..++...++ ..    .... +|+++++| .++++++.+|
T Consensus        83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p  162 (250)
T 2d2e_A           83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP  162 (250)
T ss_dssp             CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred             EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence            222111        0111100               0112222333333 11    2334 88999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHHh
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ++  ++||||++.++......+++.++
T Consensus       163 ~l--llLDEPts~LD~~~~~~l~~~l~  187 (250)
T 2d2e_A          163 TY--AVLDETDSGLDIDALKVVARGVN  187 (250)
T ss_dssp             SE--EEEECGGGTTCHHHHHHHHHHHH
T ss_pred             CE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence            98  99999999999988877665443

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.72  E-value=2.5e-17  Score=145.02  Aligned_cols=140  Identities=19%  Similarity=0.241  Sum_probs=98.3

Q ss_pred             eEEeecceeec--C--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCCC
Q 023675           82 ILWHKNSVDKR--D--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLS  150 (279)
Q Consensus        82 i~~~~~~~~~~--~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~~  150 (279)
                      +++++++++|.  .        +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++
T Consensus         3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~i~   81 (266)
T 2yz2_A            3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI-EPTSGDVLYDGERKKGYEIRRNIG   81 (266)
T ss_dssp             EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCHHHHGGGEE
T ss_pred             EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEECchHHhhhhEE
Confidence            56778888885  2        238999999999999999999999999999999 89999999999876311 001111


Q ss_pred             CCcc---------cHHHHHHH-----------HHHHHHHHHhCCcc--h----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          151 FKAE---------DRVENIRR-----------IGEVAKLFADAGVI--C----IACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       151 ~~~~---------~~~~~~~~-----------v~~~~~~~~~~~~~--~----i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      |.++         ...+.+..           ...+..++...++.  .    ....+|+++++| .++++++.+|++  
T Consensus        82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l--  159 (266)
T 2yz2_A           82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI--  159 (266)
T ss_dssp             EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE--
T ss_pred             EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE--
Confidence            1111         11111110           01122233334443  2    345689999999 999999999998  


Q ss_pred             EEEeCCccchhccChhhHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++||||++.++....+.+++.
T Consensus       160 llLDEPts~LD~~~~~~l~~~  180 (266)
T 2yz2_A          160 LILDEPLVGLDREGKTDLLRI  180 (266)
T ss_dssp             EEEESTTTTCCHHHHHHHHHH
T ss_pred             EEEcCccccCCHHHHHHHHHH
Confidence            999999999999887765543

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.71  E-value=3e-17  Score=144.57  Aligned_cols=146  Identities=17%  Similarity=0.031  Sum_probs=102.1

Q ss_pred             CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcc-ccCCccEEEEcCeeccccc-----ccC
Q 023675           80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL-----NRD  148 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l-~~~~~G~i~ldgd~i~~~~-----~~~  148 (279)
                      ..+++++++++|..+     .||++++|++++|+|+||||||||+++|+|++ ..|.+|.|+++|.++...-     ...
T Consensus        19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~   98 (267)
T 2zu0_C           19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG   98 (267)
T ss_dssp             -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred             ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence            358999999999643     39999999999999999999999999999984 2688999999998874210     011


Q ss_pred             CCCCccc--------HHHHHH------------------H-HHHHHHHHHhCCcc----h-hcc-cCChHHHHH-HHHHH
Q 023675          149 LSFKAED--------RVENIR------------------R-IGEVAKLFADAGVI----C-IAC-LISPYRKDR-DACRS  194 (279)
Q Consensus       149 ~~~~~~~--------~~~~~~------------------~-v~~~~~~~~~~~~~----~-i~~-~~~~~~~~r-~~ar~  194 (279)
                      ++|.++.        ..+.+.                  . ...+..++...++.    . ... .+|+++++| .++++
T Consensus        99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAra  178 (267)
T 2zu0_C           99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM  178 (267)
T ss_dssp             EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHH
T ss_pred             EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence            1111110        001000                  0 01122233333442    1 223 489999999 99999


Q ss_pred             hCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675          195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       195 l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                      ++.+|++  ++||||++.++....+.+++.++.
T Consensus       179 L~~~p~l--LlLDEPts~LD~~~~~~l~~~l~~  209 (267)
T 2zu0_C          179 AVLEPEL--CILDESDSGLDIDALKVVADGVNS  209 (267)
T ss_dssp             HHHCCSE--EEEESTTTTCCHHHHHHHHHHHHT
T ss_pred             HHhCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9999998  999999999999988887776554

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.71  E-value=1e-16  Score=140.81  Aligned_cols=141  Identities=17%  Similarity=0.115  Sum_probs=100.2

Q ss_pred             eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCCC-
Q 023675           82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLS-  150 (279)
Q Consensus        82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~~-  150 (279)
                      +++++++++|..         +.||+++ |++++|+|+||||||||+++|+|++  |++|.|.++|.++... ....++ 
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~g~~~~~~~~~~~i~~   78 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVRKIRNYIRYST   78 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEECCEECcchHHhhheEE
Confidence            466777777754         2389999 9999999999999999999999988  8899999999876421 011233 


Q ss_pred             CCccc------HHHHHHHH--------HHHHHHHHhCCcc-h----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675          151 FKAED------RVENIRRI--------GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL  210 (279)
Q Consensus       151 ~~~~~------~~~~~~~v--------~~~~~~~~~~~~~-~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~  210 (279)
                      |.++.      ..+.+...        ..+...+...++. .    .+..+|+++++| .++++++.+|++  ++||||+
T Consensus        79 ~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l--llLDEPt  156 (263)
T 2pjz_A           79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEI--VGLDEPF  156 (263)
T ss_dssp             CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSE--EEEECTT
T ss_pred             EeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCc
Confidence            33322      11222110        1122333334443 2    345689999999 999999999998  9999999


Q ss_pred             cchhccChhhHHHHHhC
Q 023675          211 QVCEARDPKGLYKLARE  227 (279)
Q Consensus       211 ~~l~~R~~~~l~~~~~~  227 (279)
                      +.++....+.+++.++.
T Consensus       157 s~LD~~~~~~l~~~L~~  173 (263)
T 2pjz_A          157 ENVDAARRHVISRYIKE  173 (263)
T ss_dssp             TTCCHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHH
Confidence            99999888877766543

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.70  E-value=9.5e-17  Score=140.88  Aligned_cols=142  Identities=19%  Similarity=0.166  Sum_probs=98.1

Q ss_pred             CCeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           80 TNILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      ..+++++++++|..+        .||++++|++++|+|+||||||||+++|+|++ .+ +|.|+++|.++...    +..
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~-~G~I~i~g~~i~~~~~~~~~~   93 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY-DA-EGDIKIGGKNVNKYNRNSIRS   93 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CC-EEEEEETTEEGGGBCHHHHHT
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC-CC-CeEEEECCEEhhhcCHHHHhc
Confidence            458999999999642        28999999999999999999999999999999 56 89999999887421    111


Q ss_pred             CCCCCcc-------cHHHHHHH------HHHHHHHHHhCCcc---------------hhcccCChHHHHH-HHHHHhCCC
Q 023675          148 DLSFKAE-------DRVENIRR------IGEVAKLFADAGVI---------------CIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       148 ~~~~~~~-------~~~~~~~~------v~~~~~~~~~~~~~---------------~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      .++|.++       ...+.+..      ..++...+...++.               ..+..+|+++++| .++++++.+
T Consensus        94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~  173 (260)
T 2ghi_A           94 IIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD  173 (260)
T ss_dssp             TEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred             cEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence            1111111       11111110      00111111111111               1234689999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      |++  ++||||++.++....+.+++.+
T Consensus       174 p~l--llLDEPts~LD~~~~~~i~~~l  198 (260)
T 2ghi_A          174 PKI--VIFDEATSSLDSKTEYLFQKAV  198 (260)
T ss_dssp             CSE--EEEECCCCTTCHHHHHHHHHHH
T ss_pred             CCE--EEEECccccCCHHHHHHHHHHH
Confidence            998  9999999999998877655543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.70  E-value=1e-17  Score=145.04  Aligned_cols=142  Identities=18%  Similarity=0.235  Sum_probs=96.0

Q ss_pred             CeEEeecceeecC--C-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec--ccc--cc---
Q 023675           81 NILWHKNSVDKRD--R-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RHG--LN---  146 (279)
Q Consensus        81 ~i~~~~~~~~~~~--~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i--~~~--~~---  146 (279)
                      .+++++++++|..  +     .||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.--  .+.  +.   
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~i~~v~Q~~~~~~~t   81 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHVAIKGSVAYVPQQAWIQNDS   81 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS-EEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEEEEcCCCcCCCcC
Confidence            3788888888862  2     29999999999999999999999999999999 89999999998411  000  00   


Q ss_pred             --cCCCCCcccHHHHHHHHHHHHHHHHhCC---------cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675          147 --RDLSFKAEDRVENIRRIGEVAKLFADAG---------VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE  214 (279)
Q Consensus       147 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~  214 (279)
                        ..+.+...........+.+...+....+         ....+..+|+++++| .++++++.+|++  ++||||++.++
T Consensus        82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l--llLDEPts~LD  159 (237)
T 2cbz_A           82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI--YLFDDPLSAVD  159 (237)
T ss_dssp             HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE--EEEESTTTTSC
T ss_pred             HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccC
Confidence              0000000000001111111111111111         112345689999999 999999999998  99999999999


Q ss_pred             ccChhhHHHHH
Q 023675          215 ARDPKGLYKLA  225 (279)
Q Consensus       215 ~R~~~~l~~~~  225 (279)
                      ....+.+++.+
T Consensus       160 ~~~~~~i~~~l  170 (237)
T 2cbz_A          160 AHVGKHIFENV  170 (237)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            98877777655

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.70  E-value=3.3e-17  Score=171.98  Aligned_cols=173  Identities=13%  Similarity=0.194  Sum_probs=114.9

Q ss_pred             cCCCCeEEeecceeecCCc--------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----
Q 023675           77 AKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----  144 (279)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~~--------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----  144 (279)
                      +..+.|+|+|++|+|+++.        ||++++|+.++|||+||||||||+++|.|++ +|.+|.|++||.|+++.    
T Consensus      1072 ~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p~~G~I~iDG~di~~i~~~~ 1150 (1321)
T 4f4c_A         1072 KLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY-DTLGGEIFIDGSEIKTLNPEH 1150 (1321)
T ss_dssp             CCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS-CCSSSEEEETTEETTTBCHHH
T ss_pred             CCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc-cCCCCEEEECCEEhhhCCHHH
Confidence            3457899999999997542        8999999999999999999999999999999 89999999999998531    


Q ss_pred             cccCC--------------------CCCccc-HHHHHHHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHH
Q 023675          145 LNRDL--------------------SFKAED-RVENIRRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACR  193 (279)
Q Consensus       145 ~~~~~--------------------~~~~~~-~~~~~~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar  193 (279)
                      ++..+                    +..+.+ ..+.+....+.+.   ...  ..|+.    ..+..+|+||+|| .+||
T Consensus      1151 lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiAR 1230 (1321)
T 4f4c_A         1151 TRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIAR 1230 (1321)
T ss_dssp             HHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHH
T ss_pred             HHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHH
Confidence            11111                    111110 0111111111111   111  11222    2345689999999 9999


Q ss_pred             HhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCC-CCCccccCcCCCCCCCceEEEc
Q 023675          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV-KGFTGIDDPYEPPLNCEIVLKQ  252 (279)
Q Consensus       194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~-~~~~~~r~~~~~~~~a~~~i~~  252 (279)
                      +++++|++  ++||||++.++....+.+.+.+++..- .....+-+.+..-..+|-++..
T Consensus      1231 Allr~~~I--LiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vl 1288 (1321)
T 4f4c_A         1231 ALVRNPKI--LLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVV 1288 (1321)
T ss_dssp             HHHSCCSE--EEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEE
T ss_pred             HHHhCCCE--EEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEE
Confidence            99999998  999999999998876666665553211 1122223334443446655554

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.70  E-value=1.3e-16  Score=137.39  Aligned_cols=139  Identities=14%  Similarity=0.155  Sum_probs=94.2

Q ss_pred             CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc
Q 023675           81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~  153 (279)
                      .+++++++++|..       +.||++++|++++|+||||||||||+++|+|++ .|.+|.|.++|.--.  +.....+-+
T Consensus         6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~i~~--v~q~~~~~~   82 (229)
T 2pze_A            6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSGRISF--CSQFSWIMP   82 (229)
T ss_dssp             EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEECSCEEE--ECSSCCCCS
T ss_pred             eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCccEEEECCEEEE--EecCCcccC
Confidence            4788999999942       239999999999999999999999999999999 899999999984110  000000000


Q ss_pred             ccHHHHH-----------HHHHH---HHHHHHhCCc------chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675          154 EDRVENI-----------RRIGE---VAKLFADAGV------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (279)
Q Consensus       154 ~~~~~~~-----------~~v~~---~~~~~~~~~~------~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~  212 (279)
                      ....+.+           ....+   +...+.....      ...+..+|+++++| .++++++.+|++  ++||||++.
T Consensus        83 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l--llLDEPts~  160 (229)
T 2pze_A           83 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGY  160 (229)
T ss_dssp             BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE--EEEESTTTT
T ss_pred             CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECcccC
Confidence            0111111           01000   0111111110      01235789999999 999999999998  999999999


Q ss_pred             hhccChhhHHHH
Q 023675          213 CEARDPKGLYKL  224 (279)
Q Consensus       213 l~~R~~~~l~~~  224 (279)
                      ++....+.+++.
T Consensus       161 LD~~~~~~i~~~  172 (229)
T 2pze_A          161 LDVLTEKEIFES  172 (229)
T ss_dssp             SCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999887776653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.70  E-value=1e-16  Score=168.31  Aligned_cols=143  Identities=18%  Similarity=0.182  Sum_probs=101.9

Q ss_pred             CCCCeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675           78 KSTNILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L  145 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~  145 (279)
                      ..+.|+++|++|+|+.+        .||++++|++++|||+||||||||+++|.|++ +|.+|.|.+||.++++.    +
T Consensus       412 ~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~-~~~~G~I~idG~~i~~~~~~~l  490 (1321)
T 4f4c_A          412 IKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-DVLKGKITIDGVDVRDINLEFL  490 (1321)
T ss_dssp             CCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHH
T ss_pred             CCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc-ccccCcccCCCccchhccHHHH
Confidence            35689999999999743        28999999999999999999999999999999 99999999999988631    1


Q ss_pred             ccCCCCCcc-------------------cHHHHHHHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHHHhC
Q 023675          146 NRDLSFKAE-------------------DRVENIRRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       146 ~~~~~~~~~-------------------~~~~~~~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      +..++|.++                   ...+.+....+.+.   ...  ..|..    ..+..+|+||+|| .+||+++
T Consensus       491 r~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~  570 (1321)
T 4f4c_A          491 RKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV  570 (1321)
T ss_dssp             HHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred             hhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence            111111111                   01111111111111   111  12222    2345689999999 9999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      ++|++  ++||||++.++....+.+.+
T Consensus       571 ~~~~I--liLDE~tSaLD~~te~~i~~  595 (1321)
T 4f4c_A          571 RNPKI--LLLDEATSALDAESEGIVQQ  595 (1321)
T ss_dssp             TCCSE--EEEESTTTTSCTTTHHHHHH
T ss_pred             cCCCE--EEEecccccCCHHHHHHHHH
Confidence            99998  99999999999887554443

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.70  E-value=8.6e-17  Score=148.64  Aligned_cols=145  Identities=17%  Similarity=0.175  Sum_probs=100.4

Q ss_pred             CCCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      ...|++++++++|..       +.||++++|++++|+||||||||||+++|+|++ . .+|.|+++|.++...    +..
T Consensus        17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~-~~G~I~i~G~~i~~~~~~~~rr   94 (390)
T 3gd7_A           17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-N-TEGEIQIDGVSWDSITLEQWRK   94 (390)
T ss_dssp             SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS-E-EEEEEEESSCBTTSSCHHHHHH
T ss_pred             CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC-C-CCeEEEECCEECCcCChHHHhC
Confidence            357999999999942       239999999999999999999999999999998 5 789999999887421    011


Q ss_pred             CCCCCcc-------cHHHHHHH-----HHHHHHHHHhCCcch----hcc-----------cCChHHHHH-HHHHHhCCCC
Q 023675          148 DLSFKAE-------DRVENIRR-----IGEVAKLFADAGVIC----IAC-----------LISPYRKDR-DACRSMLPEG  199 (279)
Q Consensus       148 ~~~~~~~-------~~~~~~~~-----v~~~~~~~~~~~~~~----i~~-----------~~~~~~~~r-~~ar~l~~~~  199 (279)
                      .+++.++       ...+.+..     -..+...+...++..    ...           .+|++++|| .++|+++.+|
T Consensus        95 ~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P  174 (390)
T 3gd7_A           95 AFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA  174 (390)
T ss_dssp             TEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence            1111111       11111100     001111112222211    111           289999999 9999999999


Q ss_pred             CccEEEEeCCccchhccChhhHHHHHhC
Q 023675          200 DFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                      ++  ++||||++.|+......+...++.
T Consensus       175 ~l--LLLDEPts~LD~~~~~~l~~~l~~  200 (390)
T 3gd7_A          175 KI--LLLDEPSAHLDPVTYQIIRRTLKQ  200 (390)
T ss_dssp             CE--EEEESHHHHSCHHHHHHHHHHHHT
T ss_pred             CE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence            98  999999999999887777665554

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.69  E-value=3.1e-17  Score=159.43  Aligned_cols=145  Identities=17%  Similarity=0.166  Sum_probs=102.1

Q ss_pred             CCCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.|+++|++|+|+.       +.||++++|++++|+||||||||||+++|+|++ +|.+|.|.+||.++.+.    ++.
T Consensus       339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~-~~~~G~i~i~g~~i~~~~~~~~r~  417 (587)
T 3qf4_A          339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI-DPERGRVEVDELDVRTVKLKDLRG  417 (587)
T ss_dssp             CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS-CCSEEEEEESSSBGGGBCHHHHHH
T ss_pred             CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCcEEEECCEEcccCCHHHHHh
Confidence            467999999999953       228999999999999999999999999999999 89999999999988531    111


Q ss_pred             CCCCCcc-------cHHHH------------HHHHHHHH---HHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675          148 DLSFKAE-------DRVEN------------IRRIGEVA---KLFAD--AGVI----CIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       148 ~~~~~~~-------~~~~~------------~~~v~~~~---~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      .+++.++       ..+++            +....+.+   ..+..  .|..    ..+..+|++++|| .+||+++.+
T Consensus       418 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~  497 (587)
T 3qf4_A          418 HISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK  497 (587)
T ss_dssp             HEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTC
T ss_pred             heEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcC
Confidence            1111110       11111            11111111   11111  1221    2345689999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHHHh
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      |++  ++||||++.++....+.+.+.++
T Consensus       498 p~i--lllDEpts~LD~~~~~~i~~~l~  523 (587)
T 3qf4_A          498 PKV--LILDDCTSSVDPITEKRILDGLK  523 (587)
T ss_dssp             CSE--EEEESCCTTSCHHHHHHHHHHHH
T ss_pred             CCE--EEEECCcccCCHHHHHHHHHHHH
Confidence            998  99999999999988777665443

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.69  E-value=1.8e-17  Score=160.98  Aligned_cols=145  Identities=17%  Similarity=0.215  Sum_probs=101.7

Q ss_pred             CCCeEEeecceeecC--C-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRD--R-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~--~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.++++|++++|+.  +     .||++++|++++|+|+||||||||+++|+|++ +|++|.|.+||.++.+.    ++.
T Consensus       339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~~~  417 (582)
T 3b5x_A          339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-DVDSGSICLDGHDVRDYKLTNLRR  417 (582)
T ss_pred             CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEhhhCCHHHHhc
Confidence            356999999999974  2     29999999999999999999999999999999 89999999999887421    111


Q ss_pred             CCCCCccc-------HHHHHHH-------HHHHHHHHHhCC-----------cc----hhcccCChHHHHH-HHHHHhCC
Q 023675          148 DLSFKAED-------RVENIRR-------IGEVAKLFADAG-----------VI----CIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       148 ~~~~~~~~-------~~~~~~~-------v~~~~~~~~~~~-----------~~----~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      .+++.+++       .++.+..       ..++...+...+           +.    ..+..+|+|+++| .++|+++.
T Consensus       418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~  497 (582)
T 3b5x_A          418 HFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR  497 (582)
T ss_pred             CeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc
Confidence            12221111       0111100       000111111111           11    1234689999999 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +|++  ++||||++.++....+.+.+.+.
T Consensus       498 ~p~i--lllDEpts~LD~~~~~~i~~~l~  524 (582)
T 3b5x_A          498 DAPV--LILDEATSALDTESERAIQAALD  524 (582)
T ss_pred             CCCE--EEEECccccCCHHHHHHHHHHHH
Confidence            9998  99999999999988777665443

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.68  E-value=5.1e-18  Score=165.30  Aligned_cols=144  Identities=17%  Similarity=0.197  Sum_probs=100.6

Q ss_pred             CCCCeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           78 KSTNILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      ..+.|+++|++|+|..      +.||++++|++++|+||||||||||+++|+|++ +|++|.|.+||.++.+.    ++.
T Consensus       351 ~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~i~~~~~~~~r~  429 (598)
T 3qf4_B          351 VRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY-DVDRGQILVDGIDIRKIKRSSLRS  429 (598)
T ss_dssp             CCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS-CCSEEEEEETTEEGGGSCHHHHHH
T ss_pred             CCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc-CCCCeEEEECCEEhhhCCHHHHHh
Confidence            3467999999999964      238999999999999999999999999999999 89999999999988531    111


Q ss_pred             CCCCCcc-------cHHHHHH---------HHHHHH------HHHHh--CCc----chhcccCChHHHHH-HHHHHhCCC
Q 023675          148 DLSFKAE-------DRVENIR---------RIGEVA------KLFAD--AGV----ICIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       148 ~~~~~~~-------~~~~~~~---------~v~~~~------~~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      .+++.++       ..++.+.         .+.+..      .....  .|.    ...+..+|+|++|| .+||+++.+
T Consensus       430 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~  509 (598)
T 3qf4_B          430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN  509 (598)
T ss_dssp             HEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred             ceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            1111111       1111111         011110      00111  011    11234689999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      |++  ++||||++.++....+.+.+.
T Consensus       510 p~i--lllDEpts~LD~~~~~~i~~~  533 (598)
T 3qf4_B          510 PKI--LILDEATSNVDTKTEKSIQAA  533 (598)
T ss_dssp             CSE--EEECCCCTTCCHHHHHHHHHH
T ss_pred             CCE--EEEECCccCCCHHHHHHHHHH
Confidence            998  999999999998877665543

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.67  E-value=2.1e-16  Score=153.30  Aligned_cols=143  Identities=22%  Similarity=0.233  Sum_probs=100.6

Q ss_pred             CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.++++|++|+|+++       .||++++|++++|+||||||||||+++|+|++ +|.+|+|.+||.++.+.    +..
T Consensus       337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~r~  415 (578)
T 4a82_A          337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-DVTSGQILIDGHNIKDFLTGSLRN  415 (578)
T ss_dssp             SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-CCSEEEEEETTEEGGGSCHHHHHH
T ss_pred             CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHhh
Confidence            4679999999999642       28999999999999999999999999999999 89999999999987531    111


Q ss_pred             CCCCCcc-------cHHHHH---------HHHHHHHH------HHHh--CCc----chhcccCChHHHHH-HHHHHhCCC
Q 023675          148 DLSFKAE-------DRVENI---------RRIGEVAK------LFAD--AGV----ICIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       148 ~~~~~~~-------~~~~~~---------~~v~~~~~------~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      .+++.++       ..++.+         ..+.+...      ....  .|.    ...+..+|+|++|| .+||+++.+
T Consensus       416 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~  495 (578)
T 4a82_A          416 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN  495 (578)
T ss_dssp             TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred             heEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcC
Confidence            1111111       111111         01111111      1111  011    12344689999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      |++  ++||||++.++....+.+.+.
T Consensus       496 p~i--lllDEpts~LD~~~~~~i~~~  519 (578)
T 4a82_A          496 PPI--LILDEATSALDLESESIIQEA  519 (578)
T ss_dssp             CSE--EEEESTTTTCCHHHHHHHHHH
T ss_pred             CCE--EEEECccccCCHHHHHHHHHH
Confidence            998  999999999998876655543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.67  E-value=2.5e-16  Score=152.94  Aligned_cols=143  Identities=17%  Similarity=0.216  Sum_probs=100.7

Q ss_pred             CCCeEEeecceeecC--C-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675           79 STNILWHKNSVDKRD--R-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR  147 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~--~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~  147 (279)
                      .+.++++|++++|+.  +     .||++++|++++|+||||||||||+++|+|++ +|++|.|.+||.++.+.    ++.
T Consensus       339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~~~  417 (582)
T 3b60_A          339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDEGHILMDGHDLREYTLASLRN  417 (582)
T ss_dssp             CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-CCSEEEEEETTEETTTBCHHHHHH
T ss_pred             CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-CCCCCeEEECCEEccccCHHHHHh
Confidence            357999999999973  2     29999999999999999999999999999999 89999999999887431    111


Q ss_pred             CCCCCcc-------cHHHHHHH-------HHHHHHHHHhCCc---------------chhcccCChHHHHH-HHHHHhCC
Q 023675          148 DLSFKAE-------DRVENIRR-------IGEVAKLFADAGV---------------ICIACLISPYRKDR-DACRSMLP  197 (279)
Q Consensus       148 ~~~~~~~-------~~~~~~~~-------v~~~~~~~~~~~~---------------~~i~~~~~~~~~~r-~~ar~l~~  197 (279)
                      .+++.++       ..++.+..       ..++...+...++               ...+..+|+|++|| .++|+++.
T Consensus       418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~  497 (582)
T 3b60_A          418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR  497 (582)
T ss_dssp             TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred             hCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence            1111111       11111110       0011111111111               11245689999999 99999999


Q ss_pred             CCCccEEEEeCCccchhccChhhHHHH
Q 023675          198 EGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +|++  ++||||++.++....+.+.+.
T Consensus       498 ~p~i--lllDEpts~LD~~~~~~i~~~  522 (582)
T 3b60_A          498 DSPI--LILDEATSALDTESERAIQAA  522 (582)
T ss_dssp             CCSE--EEEETTTSSCCHHHHHHHHHH
T ss_pred             CCCE--EEEECccccCCHHHHHHHHHH
Confidence            9998  999999999999887765543

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.67  E-value=2.2e-16  Score=137.63  Aligned_cols=139  Identities=13%  Similarity=0.095  Sum_probs=95.1

Q ss_pred             eEEeeccee-ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c-------ccCC
Q 023675           82 ILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L-------NRDL  149 (279)
Q Consensus        82 i~~~~~~~~-~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~-------~~~~  149 (279)
                      +++++++++ ..++.||++++|++++|+|+||||||||+++|+|++ .|. |.|.++|.++...    +       ....
T Consensus         5 l~~~~l~~~~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   82 (249)
T 2qi9_C            5 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQ   82 (249)
T ss_dssp             EEEEEEEETTTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCE-EEEEETTEEGGGSCHHHHHHHEEEECSCC
T ss_pred             EEEEceEEEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCC-eEEEECCEECCcCCHHHHhceEEEECCCC
Confidence            556666553 234559999999999999999999999999999999 788 9999999886321    0       0111


Q ss_pred             C-CCcccHHHHHHH-------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC-------ccEEEEeCC
Q 023675          150 S-FKAEDRVENIRR-------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD-------FIEVFMDVP  209 (279)
Q Consensus       150 ~-~~~~~~~~~~~~-------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~-------~i~i~ld~p  209 (279)
                      . +......+.+..       ...+..++...++..    .+..+|+++++| .++++++.+|+       +  ++||||
T Consensus        83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l--llLDEP  160 (249)
T 2qi9_C           83 TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL--LLLDEP  160 (249)
T ss_dssp             CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE--EEESST
T ss_pred             ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE--EEEECC
Confidence            1 100011111110       011222333334322    345689999999 99999999998       8  999999


Q ss_pred             ccchhccChhhHHHH
Q 023675          210 LQVCEARDPKGLYKL  224 (279)
Q Consensus       210 ~~~l~~R~~~~l~~~  224 (279)
                      ++.++....+.+.+.
T Consensus       161 ts~LD~~~~~~l~~~  175 (249)
T 2qi9_C          161 MNSLDVAQQSALDKI  175 (249)
T ss_dssp             TTTCCHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHH
Confidence            999999887775543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.66  E-value=7.5e-16  Score=134.60  Aligned_cols=136  Identities=12%  Similarity=0.062  Sum_probs=93.3

Q ss_pred             eEEeecceeec-CC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---c--cccc---
Q 023675           82 ILWHKNSVDKR-DR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---H--GLNR---  147 (279)
Q Consensus        82 i~~~~~~~~~~-~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~--~~~~---  147 (279)
                      +++++++++|. ++     .||++++|++++|+|+||||||||+++|+|++ .|.+|.|.+... +.   +  .+..   
T Consensus         5 l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~~~-i~~v~q~~~~~~~~t   82 (253)
T 2nq2_C            5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH-RPIQGKIEVYQS-IGFVPQFFSSPFAYS   82 (253)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS-CCSEEEEEECSC-EEEECSCCCCSSCCB
T ss_pred             EEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEEecc-EEEEcCCCccCCCCC
Confidence            67888888886 43     38999999999999999999999999999999 899999974321 10   0  0000   


Q ss_pred             ---CCCCCcc--------cHHHHHHHHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675          148 ---DLSFKAE--------DRVENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ  211 (279)
Q Consensus       148 ---~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~  211 (279)
                         .+.+...        .......+   +...+...++..    .+..+|+++++| .++++++.+|++  ++||||++
T Consensus        83 v~enl~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l--llLDEPts  157 (253)
T 2nq2_C           83 VLDIVLMGRSTHINTFAKPKSHDYQV---AMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKL--ILLDEPTS  157 (253)
T ss_dssp             HHHHHHGGGGGGSCTTCCCCHHHHHH---HHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSE--EEESSSST
T ss_pred             HHHHHHHhhhhhcccccCCCHHHHHH---HHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcc
Confidence               0000000        00011111   222233334322    345689999999 999999999998  99999999


Q ss_pred             chhccChhhHHHH
Q 023675          212 VCEARDPKGLYKL  224 (279)
Q Consensus       212 ~l~~R~~~~l~~~  224 (279)
                      .++......+.+.
T Consensus       158 ~LD~~~~~~l~~~  170 (253)
T 2nq2_C          158 ALDLANQDIVLSL  170 (253)
T ss_dssp             TSCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHH
Confidence            9999887765543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.62  E-value=1e-16  Score=167.82  Aligned_cols=142  Identities=18%  Similarity=0.187  Sum_probs=99.3

Q ss_pred             CCCCeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675           78 KSTNILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L  145 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~  145 (279)
                      ..+.|+++|++|+|+.+        .||++++|++++|+|+||||||||+++|.|++ +|.+|.|.+||.+++..    +
T Consensus       384 ~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~-~~~~G~i~i~g~~i~~~~~~~~  462 (1284)
T 3g5u_A          384 IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY-DPLDGMVSIDGQDIRTINVRYL  462 (1284)
T ss_dssp             CCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS-CCSEEEEEETTEEGGGSCHHHH
T ss_pred             CCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEHHhCCHHHH
Confidence            34679999999999742        28999999999999999999999999999999 89999999999987531    1


Q ss_pred             ccCCCCCcc-------cHHHHHH---------HHHHHH------HHHHh--CCc----chhcccCChHHHHH-HHHHHhC
Q 023675          146 NRDLSFKAE-------DRVENIR---------RIGEVA------KLFAD--AGV----ICIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       146 ~~~~~~~~~-------~~~~~~~---------~v~~~~------~~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      +..+++.++       ..++.+.         .+.+.+      .....  .+.    ...+..+|++++|| .+||+++
T Consensus       463 r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~  542 (1284)
T 3g5u_A          463 REIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV  542 (1284)
T ss_dssp             HHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred             HhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence            111111111       1111111         111111      11111  111    12344689999999 9999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLY  222 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~  222 (279)
                      .+|++  ++||||++.++....+.+.
T Consensus       543 ~~p~i--liLDEpts~LD~~~~~~i~  566 (1284)
T 3g5u_A          543 RNPKI--LLLDEATSALDTESEAVVQ  566 (1284)
T ss_dssp             HCCSE--EEEESTTCSSCHHHHHHHH
T ss_pred             cCCCE--EEEECCCCCCCHHHHHHHH
Confidence            99998  9999999999887554443

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.61  E-value=1.3e-15  Score=135.51  Aligned_cols=140  Identities=15%  Similarity=0.176  Sum_probs=85.1

Q ss_pred             CCeEEeecceeec---CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH
Q 023675           80 TNILWHKNSVDKR---DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR  156 (279)
Q Consensus        80 ~~i~~~~~~~~~~---~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~  156 (279)
                      ..++++++++.+.   ++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.-- . +.....+-+...
T Consensus        39 ~~l~~~~l~~~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~i~-~-v~Q~~~l~~~tv  115 (290)
T 2bbs_A           39 DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSGRIS-F-CSQNSWIMPGTI  115 (290)
T ss_dssp             -----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS-CEEEEEEECCSCEE-E-ECSSCCCCSSBH
T ss_pred             ceEEEEEEEEcCceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEEE-E-EeCCCccCcccH
Confidence            3577788776542   3449999999999999999999999999999999 89999999998411 0 000000000011


Q ss_pred             HHHHH-------HHHHH------HHHHHhCCc------chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675          157 VENIR-------RIGEV------AKLFADAGV------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (279)
Q Consensus       157 ~~~~~-------~v~~~------~~~~~~~~~------~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R  216 (279)
                      .+.+.       ...+.      ...+.....      ...+..+|+++++| .++++++.+|++  ++||||++.++..
T Consensus       116 ~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l--llLDEPts~LD~~  193 (290)
T 2bbs_A          116 KENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGYLDVL  193 (290)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHH
T ss_pred             HHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE--EEEECCcccCCHH
Confidence            11110       00001      011111110      01134689999999 999999999998  9999999999998


Q ss_pred             ChhhHHHH
Q 023675          217 DPKGLYKL  224 (279)
Q Consensus       217 ~~~~l~~~  224 (279)
                      ....+++.
T Consensus       194 ~~~~i~~~  201 (290)
T 2bbs_A          194 TEKEIFES  201 (290)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87777654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.59  E-value=6.4e-16  Score=129.86  Aligned_cols=160  Identities=26%  Similarity=0.329  Sum_probs=97.2

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccHHHHHHHHHHHHHHHH
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFA  171 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~  171 (279)
                      +..++|++++|+|+|||||||++++|++.+     |.++++++++...     ......+.......++..+........
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   98 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARA   98 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHH
Confidence            455689999999999999999999999987     5789999987531     111223333333333333333333333


Q ss_pred             hCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCC------CccccCcCCCCCC
Q 023675          172 DAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG------FTGIDDPYEPPLN  245 (279)
Q Consensus       172 ~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~------~~~~r~~~~~~~~  245 (279)
                      ..+...+++........++.++.+..  ++..|+|++|.+.+.+|+.++      .++...      ....+.++|... 
T Consensus        99 ~~g~~viid~~~~~~~~~~~l~~~~~--~~~vv~l~~~~e~l~~Rl~~R------~~~~~~~~~l~~~~~~~~~~~~~~-  169 (200)
T 4eun_A           99 DAGVSTIITCSALKRTYRDVLREGPP--SVDFLHLDGPAEVIKGRMSKR------EGHFMPASLLQSQLATLEALEPDE-  169 (200)
T ss_dssp             HTTCCEEEEECCCCHHHHHHHTTSSS--CCEEEEEECCHHHHHHHHTTC------SCCSSCGGGHHHHHHHCCCCCTTS-
T ss_pred             hcCCCEEEEchhhhHHHHHHHHHhCC--ceEEEEEeCCHHHHHHHHHhc------ccCCCCHHHHHHHHHHhCCCCCCC-
Confidence            33433444444444555665555443  345589999999999987432      111111      111123444332 


Q ss_pred             CceEEEccCCCCCCHHHHHHHHHHHHHhC
Q 023675          246 CEIVLKQMGDDCPSPADMVETVVSYLDEN  274 (279)
Q Consensus       246 a~~~i~~~~~~~~~~~e~~~~Il~~l~~~  274 (279)
                      ++++||+   +. ++++++++|++.|...
T Consensus       170 ~~~~Id~---~~-~~~e~~~~I~~~l~~~  194 (200)
T 4eun_A          170 SGIVLDL---RQ-PPEQLIERALTWLDIA  194 (200)
T ss_dssp             CEEEEET---TS-CHHHHHHHHHHHHCCC
T ss_pred             CeEEEEC---CC-CHHHHHHHHHHHHHhc
Confidence            6788887   54 9999999999988754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.58  E-value=2.5e-15  Score=157.44  Aligned_cols=145  Identities=19%  Similarity=0.202  Sum_probs=102.3

Q ss_pred             CCCeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cc
Q 023675           79 STNILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LN  146 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~  146 (279)
                      .+.+++++++|+|+.        +.||++++|++++|+|+||||||||+++|.|++ +|.+|.|.+||.+++..    ++
T Consensus      1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~-~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A         1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY-DPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp             SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS-CCSEEEEESSSSCTTSSCHHHHT
T ss_pred             CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEcccCCHHHHH
Confidence            467999999999964        239999999999999999999999999999999 89999999999988531    11


Q ss_pred             cCCCCCccc-------HH--------------HHHHHHHHHH---HHHHh--CCc----chhcccCChHHHHH-HHHHHh
Q 023675          147 RDLSFKAED-------RV--------------ENIRRIGEVA---KLFAD--AGV----ICIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       147 ~~~~~~~~~-------~~--------------~~~~~v~~~~---~~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ..+++.+++       .+              +.+....+.+   .....  .|+    ...+..+|+|++|| .++|++
T Consensus      1107 ~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A         1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp             TSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred             hceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence            112211111       01              1111111111   11111  111    12344689999999 999999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +.+|++  ++||||+..++....+.+.+.++
T Consensus      1187 ~~~p~i--LiLDEpTs~lD~~~~~~i~~~l~ 1215 (1284)
T 3g5u_A         1187 VRQPHI--LLLDEATSALDTESEKVVQEALD 1215 (1284)
T ss_dssp             HHCCSS--EEEESCSSSCCHHHHHHHHHHHH
T ss_pred             HcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence            999998  99999999999887666555443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.53  E-value=2.6e-14  Score=137.29  Aligned_cols=140  Identities=14%  Similarity=0.072  Sum_probs=93.4

Q ss_pred             CeEEeecceeecC----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCC-ccc
Q 023675           81 NILWHKNSVDKRD----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK-AED  155 (279)
Q Consensus        81 ~i~~~~~~~~~~~----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~-~~~  155 (279)
                      .+++++++..|.+    ..++++++|++++|+|+||||||||+++|+|++ .|++|.|.+++..+.... ...... ...
T Consensus       269 ~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~i~~~~-q~~~~~~~~t  346 (538)
T 3ozx_A          269 KMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI-TADEGSVTPEKQILSYKP-QRIFPNYDGT  346 (538)
T ss_dssp             EEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSBCCEESSCCCEEEEC-SSCCCCCSSB
T ss_pred             eEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCeeeEeec-hhcccccCCC
Confidence            4667777666653    126678999999999999999999999999999 899999998886652110 000000 001


Q ss_pred             HHHHHHHH---------HHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhH
Q 023675          156 RVENIRRI---------GEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL  221 (279)
Q Consensus       156 ~~~~~~~v---------~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l  221 (279)
                      ..+.+...         ......+...++.    ..+..+|++++|| .+|++++.+|++  ++||||+..++......+
T Consensus       347 v~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~l--LlLDEPT~gLD~~~~~~i  424 (538)
T 3ozx_A          347 VQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADL--YVLDQPSSYLDVEERYIV  424 (538)
T ss_dssp             HHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHHHHHHH
T ss_pred             HHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHHHHHHH
Confidence            11111110         0011111122222    2355689999999 999999999998  999999999999877665


Q ss_pred             HHH
Q 023675          222 YKL  224 (279)
Q Consensus       222 ~~~  224 (279)
                      ++.
T Consensus       425 ~~~  427 (538)
T 3ozx_A          425 AKA  427 (538)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.51  E-value=4.5e-14  Score=115.66  Aligned_cols=159  Identities=15%  Similarity=0.099  Sum_probs=91.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccC-------CCC----C---cccHHHHHHHHHHH
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-------LSF----K---AEDRVENIRRIGEV  166 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~-------~~~----~---~~~~~~~~~~v~~~  166 (279)
                      .|.+|+|+|+|||||||+++.|+..++.   +.+.++.|.++..+...       +.+    .   ....+.....+.+.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEG   78 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCC---CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHH
Confidence            3678999999999999999999998842   35555666553222110       011    0   11122222232223


Q ss_pred             HHHHHhCCcchhcccCCh-HHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCc-cccCcCCCCC
Q 023675          167 AKLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFT-GIDDPYEPPL  244 (279)
Q Consensus       167 ~~~~~~~~~~~i~~~~~~-~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~-~~r~~~~~~~  244 (279)
                      ...+...+..++++.... +...++.++..+....++.+++++|.+.+.+|+.++      ..+..... .....++.+.
T Consensus        79 ~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r------~~~~~~~~~~~~~~~~~~~  152 (178)
T 1qhx_A           79 VVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR------GDRVAGMAAKQAYVVHEGV  152 (178)
T ss_dssp             HHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT------SSSCTTHHHHHTTGGGTTC
T ss_pred             HHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhh------CCcccchhhhhchhhccCC
Confidence            333344454445444332 223344444455544566689999999999998532      11111110 0112233333


Q ss_pred             CCceEEEccCCCCCCHHHHHHHHHHHH
Q 023675          245 NCEIVLKQMGDDCPSPADMVETVVSYL  271 (279)
Q Consensus       245 ~a~~~i~~~~~~~~~~~e~~~~Il~~l  271 (279)
                      .++++|||   +..++++++++|+..+
T Consensus       153 ~~d~~idt---~~~~~~~~~~~I~~~l  176 (178)
T 1qhx_A          153 EYDVEVDT---THKESIECAWAIAAHV  176 (178)
T ss_dssp             CCSEEEET---TSSCHHHHHHHHHTTC
T ss_pred             CCcEEEEC---CCCCHHHHHHHHHHHh
Confidence            47899999   8889999999998754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.50  E-value=5.5e-14  Score=115.05  Aligned_cols=156  Identities=18%  Similarity=0.263  Sum_probs=92.1

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-----ccCCCCCcccHHHHHHHHHHHHHHHHhCC
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVENIRRIGEVAKLFADAG  174 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  174 (279)
                      .+|++++|+|+|||||||+++.|++.+     |.+++|+|++....     .....+.......++..+......+...+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN   80 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcC
Confidence            468999999999999999999999987     46799999875320     11122222222233333333222222223


Q ss_pred             cchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCC-------CCccccCcCCCCCCCc
Q 023675          175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK-------GFTGIDDPYEPPLNCE  247 (279)
Q Consensus       175 ~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~-------~~~~~r~~~~~~~~a~  247 (279)
                      ..++++........++.++...  +++..|++++|.+.+.+|+.++      .+...       .+.....++|.. .++
T Consensus        81 ~~~vi~~~~~~~~~~~~l~~~~--~~~~vv~l~~~~e~~~~R~~~R------~~~~~~~~~~~~~~~~~~~~~~~~-~~~  151 (175)
T 1knq_A           81 KVSLIVCSALKKHYRDLLREGN--PNLSFIYLKGDFDVIESRLKAR------KGHFFKTQMLVTQFETLQEPGADE-TDV  151 (175)
T ss_dssp             SEEEEECCCCSHHHHHHHHTTC--TTEEEEEEECCHHHHHHHHHTS------TTCCCCHHHHHHHHHHCCCCCTTC-TTE
T ss_pred             CcEEEEeCchHHHHHHHHHhcC--CCEEEEEEECCHHHHHHHHHhc------cCCCCchHHHHHHHHhhhCcccCC-CCe
Confidence            3334443333445555555432  2445699999999999987532      11100       000011222322 267


Q ss_pred             eEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          248 IVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       248 ~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      ++||+   + .++++++++|+..+..
T Consensus       152 ~~Id~---~-~~~~~~~~~i~~~l~~  173 (175)
T 1knq_A          152 LVVDI---D-QPLEGVVASTIEVIKK  173 (175)
T ss_dssp             EEEEC---S-SCHHHHHHHHHHHHHC
T ss_pred             EEEeC---C-CCHHHHHHHHHHHHhc
Confidence            88987   5 6999999999988753

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.47  E-value=2e-14  Score=120.56  Aligned_cols=156  Identities=19%  Similarity=0.207  Sum_probs=96.8

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccHHHHHHHHHHHHHHHHhCC
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFADAG  174 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  174 (279)
                      +.+.+|+|+|+|||||||+++.|++.++     ..++++|++...     ......+.......++..+.   ..+ ..+
T Consensus        16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg-----~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~---~~~-~~~   86 (202)
T 3t61_A           16 RFPGSIVVMGVSGSGKSSVGEAIAEACG-----YPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIG---ERL-ASR   86 (202)
T ss_dssp             CCSSCEEEECSTTSCHHHHHHHHHHHHT-----CCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHH---HHH-TSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHH---HHH-hcC
Confidence            4467999999999999999999999884     448999887421     11222333333333333332   222 334


Q ss_pred             cchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCC------CccccCcCCCCCCCce
Q 023675          175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG------FTGIDDPYEPPLNCEI  248 (279)
Q Consensus       175 ~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~------~~~~r~~~~~~~~a~~  248 (279)
                      ..++++........++.+..+...+ +..|+|++|.+.+.+|+.++      .++...      ......+++.. .+++
T Consensus        87 ~~vivd~~~~~~~~~~~l~~~~~~~-~~vi~l~~~~e~~~~Rl~~R------~~~~~~~~~~~~~~~~~~~~~~~-~~~~  158 (202)
T 3t61_A           87 EPVVVSCSALKRSYRDKLRESAPGG-LAFVFLHGSESVLAERMHHR------TGHFMPSSLLQTQLETLEDPRGE-VRTV  158 (202)
T ss_dssp             SCCEEECCCCSHHHHHHHHHTSTTC-CEEEEEECCHHHHHHHHHHH------HSSCCCHHHHHHHHHHCCCCTTS-TTEE
T ss_pred             CCEEEECCCCCHHHHHHHHHhcCCC-eEEEEEeCCHHHHHHHHHHh------hccCCCHHHHHHHHHhcCCCCCC-CCeE
Confidence            4445554444556666676665442 45599999999999998543      111111      01111222222 2668


Q ss_pred             EEEccCCCCCCHHHHHHHHHHHHHhCCC
Q 023675          249 VLKQMGDDCPSPADMVETVVSYLDENGF  276 (279)
Q Consensus       249 ~i~~~~~~~~~~~e~~~~Il~~l~~~~~  276 (279)
                      +|++   + .++++++++|++.|+..|+
T Consensus       159 ~Id~---~-~~~~e~~~~I~~~l~~~~~  182 (202)
T 3t61_A          159 AVDV---A-QPLAEIVREALAGLARLAE  182 (202)
T ss_dssp             EEES---S-SCHHHHHHHHHHHHHHHHH
T ss_pred             EEeC---C-CCHHHHHHHHHHHHHHhhh
Confidence            8887   5 7999999999999987653

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.47  E-value=3.1e-15  Score=130.45  Aligned_cols=177  Identities=14%  Similarity=0.132  Sum_probs=96.7

Q ss_pred             CeEEeec-ceee-cC-----CcceeccC---CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCC
Q 023675           81 NILWHKN-SVDK-RD-----RQQLLQQK---GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLS  150 (279)
Q Consensus        81 ~i~~~~~-~~~~-~~-----~~sl~i~~---g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~  150 (279)
                      .++++++ +++| ..     +.+|.+.+   |++++|+|+|||||||++++|++.+..+     ++|.+.+.........
T Consensus        17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~-----~~d~d~~~~~~~~g~~   91 (250)
T 3nwj_A           17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYT-----FFDCDTLIEQAMKGTS   91 (250)
T ss_dssp             ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHSTTSC
T ss_pred             ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCc-----EEeCcHHHHHHhcCcc
Confidence            5788888 8888 33     23899999   9999999999999999999999988543     7888765322110000


Q ss_pred             ----CCcccHHHHHHHHHH-HHHHHHh--CCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChh----
Q 023675          151 ----FKAEDRVENIRRIGE-VAKLFAD--AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK----  219 (279)
Q Consensus       151 ----~~~~~~~~~~~~v~~-~~~~~~~--~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~----  219 (279)
                          +.......+.....+ +..+...  ..++..+.+......++..+    .. . +.|||++|.+.+.+|+.+    
T Consensus        92 i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG~v~~~~~~~~l----~~-~-~vV~L~a~~e~l~~Rl~~~~~~  165 (250)
T 3nwj_A           92 VAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYM----HK-G-ISIWLDVPLEALAHRIAAVGTG  165 (250)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEECCGGGGGSHHHHHHH----TT-S-EEEEEECCHHHHHHHHHC----
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEecCCCeecCHHHHHHH----hC-C-cEEEEECCHHHHHHHHhhcCCC
Confidence                111111111111111 2222222  22333333322233344333    22 3 349999999999999753    


Q ss_pred             --hHHHHHhC--------CCCCCCccccCcCCCCCCCceEE------------EccCCCCCCHHHHHHHHHHHHHh
Q 023675          220 --GLYKLARE--------GKVKGFTGIDDPYEPPLNCEIVL------------KQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       220 --~l~~~~~~--------~~~~~~~~~r~~~~~~~~a~~~i------------~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                        .++.....        ..+..++..|.++|+.  ++++|            ||   +..++++++++|++.++.
T Consensus       166 ~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~--ad~vi~~~~~~~~~~~iDT---s~~s~eev~~~I~~~i~~  236 (250)
T 3nwj_A          166 SRPLLHDDESGDTYTAALNRLSTIWDARGEAYTK--ASARVSLENITLKLGYRSV---SDLTPAEIAIEAFEQVQS  236 (250)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHTT--SSEEEEHHHHHHHHTCSSG---GGCCHHHHHHHHHHHHHH
T ss_pred             CCCcccCCCcccchhhHHHHHHHHHHHHHHHHhh--CCEEEEecccccccccccC---CCCCHHHHHHHHHHHHHH
Confidence              13221110        1234455668888876  77888            66   788999999999988875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.46  E-value=2.4e-13  Score=132.29  Aligned_cols=140  Identities=16%  Similarity=0.107  Sum_probs=91.8

Q ss_pred             CeEEeecceeecCC----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---cccccCCCCCc
Q 023675           81 NILWHKNSVDKRDR----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~~----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~~~~~~~~~~~  153 (279)
                      .+++++++++|.+.    .+|++.+|++++|+|+||||||||+++|+|++ .|++|.|.++. .+.   +.......++.
T Consensus       357 ~l~~~~l~~~~~~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~~-~i~~v~Q~~~~~~~~tv  434 (607)
T 3bk7_A          357 LVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE-EPTEGKVEWDL-TVAYKPQYIKAEYEGTV  434 (607)
T ss_dssp             EEEECCEEEECSSCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS-CCSBSCCCCCC-CEEEECSSCCCCCSSBH
T ss_pred             EEEEeceEEEecceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEEee-EEEEEecCccCCCCCcH
Confidence            47788888777542    25557999999999999999999999999999 89999987632 110   00000011111


Q ss_pred             ccHHHHH--HH---HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          154 EDRVENI--RR---IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       154 ~~~~~~~--~~---v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      .+.....  ..   -..+..++...++..    .+..+|+++++| .++++++.+|++  ++||||+..++......+++
T Consensus       435 ~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l--LlLDEPt~~LD~~~~~~l~~  512 (607)
T 3bk7_A          435 YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI--YLLDEPSAYLDVEQRLAVSR  512 (607)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE--EEEECTTTTCCHHHHHHHHH
T ss_pred             HHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCccCCCHHHHHHHHH
Confidence            1111110  00   001112222223322    345689999999 999999999998  99999999999988776554


Q ss_pred             H
Q 023675          224 L  224 (279)
Q Consensus       224 ~  224 (279)
                      .
T Consensus       513 ~  513 (607)
T 3bk7_A          513 A  513 (607)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.45  E-value=3.1e-13  Score=129.92  Aligned_cols=140  Identities=17%  Similarity=0.139  Sum_probs=91.2

Q ss_pred             CeEEeecceeecC----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---cccccCCCCCc
Q 023675           81 NILWHKNSVDKRD----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~~~~~~~~~~~  153 (279)
                      .++++++++.|.+    ..+|++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++. .+.   +.......++.
T Consensus       287 ~l~~~~l~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~i~~~~-~i~~v~Q~~~~~~~~tv  364 (538)
T 1yqt_A          287 LVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE-EPTEGKIEWDL-TVAYKPQYIKADYEGTV  364 (538)
T ss_dssp             EEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS-CCSBCCCCCCC-CEEEECSSCCCCCSSBH
T ss_pred             EEEEeeEEEEECCEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECc-eEEEEecCCcCCCCCcH
Confidence            4677787777753    225667999999999999999999999999999 89999987632 110   00000011111


Q ss_pred             ccHHHHH--HHH---HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          154 EDRVENI--RRI---GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       154 ~~~~~~~--~~v---~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      .+.....  ...   ..+..++...++..    .+..+|+++++| .++++++.+|++  ++||||+..++......+++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l--LlLDEPt~~LD~~~~~~i~~  442 (538)
T 1yqt_A          365 YELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI--YLLDEPSAYLDVEQRLAVSR  442 (538)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE--EEEECTTTTCCHHHHHHHHH
T ss_pred             HHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCcccCCHHHHHHHHH
Confidence            1111100  000   01112222233322    244689999999 899999999998  99999999999988776555


Q ss_pred             H
Q 023675          224 L  224 (279)
Q Consensus       224 ~  224 (279)
                      .
T Consensus       443 ~  443 (538)
T 1yqt_A          443 A  443 (538)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.43  E-value=3.6e-14  Score=116.43  Aligned_cols=114  Identities=19%  Similarity=0.229  Sum_probs=66.4

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCC
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAG  174 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  174 (279)
                      .||++++|++++|+|+||||||||++++.+-.       ..+.++.++..+....+ ...-....+..+..........+
T Consensus         2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~-------~~~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g   73 (171)
T 4gp7_A            2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT-------EVISSDFCRGLMSDDEN-DQTVTGAAFDVLHYIVSKRLQLG   73 (171)
T ss_dssp             EEEEEESSEEEEEECCTTSCHHHHHHHHSCGG-------GEEEHHHHHHHHCSSTT-CGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccCCCCEEEEEECCCCCCHHHHHHHHccCC-------eEEccHHHHHHhcCccc-chhhHHHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999633211       12333333211111100 00001111111222222222333


Q ss_pred             cchhcc---cCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675          175 VICIAC---LISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       175 ~~~i~~---~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~  218 (279)
                      ......   ..++++++| .++++++.+|++  ++||||++.|+.+..
T Consensus        74 ~~~~~~~~~~~s~g~~qrv~iAral~~~p~~--lllDEPt~~Ld~~~~  119 (171)
T 4gp7_A           74 KLTVVDATNVQESARKPLIEMAKDYHCFPVA--VVFNLPEKVCQERNK  119 (171)
T ss_dssp             CCEEEESCCCSHHHHHHHHHHHHHTTCEEEE--EEECCCHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHHcCCcEEE--EEEeCCHHHHHHHHh
Confidence            333222   245666777 899999998877  999999999998843

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.41  E-value=2.7e-13  Score=130.34  Aligned_cols=124  Identities=19%  Similarity=0.221  Sum_probs=81.7

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE---------EEcCeecccc------cccCCCCC-------c
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRHG------LNRDLSFK-------A  153 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i---------~ldgd~i~~~------~~~~~~~~-------~  153 (279)
                      | .+++|++++|+|+||||||||+++|+|.+ .|++|.+         .++|.++...      ....+++.       +
T Consensus        42 s-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~-~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~  119 (538)
T 1yqt_A           42 P-VVKEGMVVGIVGPNGTGKSTAVKILAGQL-IPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIP  119 (538)
T ss_dssp             C-CCCTTSEEEEECCTTSSHHHHHHHHHTSS-CCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSG
T ss_pred             C-cCCCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence            5 78999999999999999999999999999 8888885         3455443210      00000000       0


Q ss_pred             ----ccHHHHHHHH---HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhH
Q 023675          154 ----EDRVENIRRI---GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL  221 (279)
Q Consensus       154 ----~~~~~~~~~v---~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l  221 (279)
                          ....+.+...   ..+..++...++..    .+..+|+++++| .++++++.+|++  ++||||++.|+......+
T Consensus       120 ~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~l--LlLDEPTs~LD~~~~~~l  197 (538)
T 1yqt_A          120 KAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATF--YFFDEPSSYLDIRQRLNA  197 (538)
T ss_dssp             GGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHHHHHHH
T ss_pred             hhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHH
Confidence                0111111100   01222333334322    345689999999 999999999998  999999999999876664


Q ss_pred             HH
Q 023675          222 YK  223 (279)
Q Consensus       222 ~~  223 (279)
                      ++
T Consensus       198 ~~  199 (538)
T 1yqt_A          198 AR  199 (538)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.40  E-value=5e-13  Score=135.31  Aligned_cols=57  Identities=18%  Similarity=0.090  Sum_probs=51.9

Q ss_pred             CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC
Q 023675           81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (279)
Q Consensus        81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg  138 (279)
                      .++++|++++|..       +.||++.+|++++|+|+||||||||+++|+|++ .|++|.|++++
T Consensus       671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll-~P~sG~I~~~~  734 (986)
T 2iw3_A          671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL-LPTSGEVYTHE  734 (986)
T ss_dssp             EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS-CCSEEEEEECT
T ss_pred             eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEcC
Confidence            4899999999964       238999999999999999999999999999999 89999999976

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.40  E-value=3.9e-13  Score=130.72  Aligned_cols=137  Identities=16%  Similarity=0.127  Sum_probs=85.8

Q ss_pred             cceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE-----------EEcCeecccc----cc
Q 023675           87 NSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-----------ILDGDNCRHG----LN  146 (279)
Q Consensus        87 ~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i-----------~ldgd~i~~~----~~  146 (279)
                      +.++|..+.     ...+.+|++++|+||||||||||+++|+|++ .|++|.|           ++.|.++...    ..
T Consensus        83 ~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll-~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~  161 (608)
T 3j16_B           83 VTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQ-KPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE  161 (608)
T ss_dssp             EEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSS-CCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred             eEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCC-CCCCceEecccchhhhhheecChhhhhhhhHHHH
Confidence            455665432     2256899999999999999999999999999 8999987           3334332110    00


Q ss_pred             cCC------CCCcc----------cHHHHHHH-----HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675          147 RDL------SFKAE----------DRVENIRR-----IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       147 ~~~------~~~~~----------~~~~~~~~-----v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      ..+      .+...          .....+..     ...+..++...++..    .+..+|+++++| +++++++.+|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~  241 (608)
T 3j16_B          162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEAD  241 (608)
T ss_dssp             TSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCS
T ss_pred             HhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCC
Confidence            000      00000          00000000     011122222223322    345689999999 99999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHHh
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +  ++||||++.|+......+++.++
T Consensus       242 l--lllDEPts~LD~~~~~~l~~~l~  265 (608)
T 3j16_B          242 V--YMFDEPSSYLDVKQRLNAAQIIR  265 (608)
T ss_dssp             E--EEEECTTTTCCHHHHHHHHHHHH
T ss_pred             E--EEEECcccCCCHHHHHHHHHHHH
Confidence            8  99999999999987776665444

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.40  E-value=2.2e-13  Score=132.60  Aligned_cols=135  Identities=16%  Similarity=0.184  Sum_probs=88.1

Q ss_pred             eecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE---------EEcCeecccc-----
Q 023675           85 HKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRHG-----  144 (279)
Q Consensus        85 ~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i---------~ldgd~i~~~-----  144 (279)
                      ++++++|..+      .+ .+++|++++|+|+||||||||+++|+|++ .|++|.+         .++|.++...     
T Consensus        95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll-~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~  172 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL-IPNLCEDNDSWDNVIRAFRGNELQNYFERLK  172 (607)
T ss_dssp             GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS-CCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred             CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC-CCCCCccccccchhhheeCCEehhhhhhhhh
Confidence            6667777543      24 68999999999999999999999999999 8888885         3455443210     


Q ss_pred             -cccCCCCC-------c----ccHHHHHHH---HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675          145 -LNRDLSFK-------A----EDRVENIRR---IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV  204 (279)
Q Consensus       145 -~~~~~~~~-------~----~~~~~~~~~---v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i  204 (279)
                       ....+++.       +    ....+.+..   ...+..++...++..    ....+|+++++| .++++++.+|++  +
T Consensus       173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~l--L  250 (607)
T 3bk7_A          173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHF--Y  250 (607)
T ss_dssp             HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSE--E
T ss_pred             hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence             00001000       0    011111110   001122233333322    344689999999 999999999998  9


Q ss_pred             EEeCCccchhccChhhHHH
Q 023675          205 FMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~  223 (279)
                      +||||++.|+......+++
T Consensus       251 lLDEPTs~LD~~~~~~l~~  269 (607)
T 3bk7_A          251 FFDEPSSYLDIRQRLKVAR  269 (607)
T ss_dssp             EEECTTTTCCHHHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHH
Confidence            9999999999987766444

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.39  E-value=2.1e-14  Score=120.47  Aligned_cols=163  Identities=15%  Similarity=0.124  Sum_probs=88.0

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHH-HHH
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEV  166 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v-~~~  166 (279)
                      ++.||.+++|++++|+|+|||||||+++.|++.+..+     ++|.|++.....   +....+.     ...++.+ .++
T Consensus        16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~-----~i~~d~~~~~~~---g~~i~~~~~~~~~~~~~~~e~~~   87 (199)
T 3vaa_A           16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVP-----FIDLDWYIEERF---HKTVGELFTERGEAGFRELERNM   87 (199)
T ss_dssp             --------CCCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHH---TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcchHHHHHHh---CCcHHHHHHhcChHHHHHHHHHH
Confidence            4558889999999999999999999999999998544     788877532110   1111110     1111111 111


Q ss_pred             HHHHHhCCcchhccc---CChHHHHHHHHHHhCCCCCccEEEEeCCccchhccCh-hh----HHHHHh----CCCCCCCc
Q 023675          167 AKLFADAGVICIACL---ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP-KG----LYKLAR----EGKVKGFT  234 (279)
Q Consensus       167 ~~~~~~~~~~~i~~~---~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~-~~----l~~~~~----~~~~~~~~  234 (279)
                      ...+..... .++..   .......++.+..    + ...|||++|.+.+.+|+. .+    +.....    ...+..+.
T Consensus        88 l~~l~~~~~-~vi~~ggg~~~~~~~~~~l~~----~-~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~  161 (199)
T 3vaa_A           88 LHEVAEFEN-VVISTGGGAPCFYDNMEFMNR----T-GKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQAL  161 (199)
T ss_dssp             HHHHTTCSS-EEEECCTTGGGSTTHHHHHHH----H-SEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHH
T ss_pred             HHHHhhcCC-cEEECCCcEEccHHHHHHHHc----C-CEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHH
Confidence            221212111 12221   1111222332322    1 244999999999999986 21    100000    00122233


Q ss_pred             cccCcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhC
Q 023675          235 GIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDEN  274 (279)
Q Consensus       235 ~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~  274 (279)
                      ..+.++|..  ++++|++   +..++++++++|++.+++.
T Consensus       162 ~~r~~~y~~--ad~~Idt---~~~s~ee~~~~I~~~l~~~  196 (199)
T 3vaa_A          162 EKRAPFYTQ--AQYIFNA---DELEDRWQIESSVQRLQEL  196 (199)
T ss_dssp             HHHHHHHTT--SSEEEEC---CCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh--CCEEEEC---CCCCHHHHHHHHHHHHHHH
Confidence            446667765  7899999   7789999999999988764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.36  E-value=1.4e-12  Score=128.45  Aligned_cols=140  Identities=19%  Similarity=0.198  Sum_probs=80.6

Q ss_pred             eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHH---------------------HHHHHccccCC-------ccE
Q 023675           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA---------------------CALSQALHWRG-------KLT  133 (279)
Q Consensus        82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~---------------------~~L~~~l~~~~-------~G~  133 (279)
                      +.+.+......++.||++++|++++|+||||||||||+                     +.+.+++ .|+       .+.
T Consensus        24 ~~~~~~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~-~~~~~~i~~~~~~  102 (670)
T 3ux8_A           24 IIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQME-KPDVDAIEGLSPA  102 (670)
T ss_dssp             EEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCE
T ss_pred             EEEcCCCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccc-cCCccceeccccc
Confidence            44555444456778999999999999999999999998                     7777776 666       455


Q ss_pred             EEEcCeecccccccCCC------------------------------CCcccHHHHH-----------------HHHHHH
Q 023675          134 YILDGDNCRHGLNRDLS------------------------------FKAEDRVENI-----------------RRIGEV  166 (279)
Q Consensus       134 i~ldgd~i~~~~~~~~~------------------------------~~~~~~~~~~-----------------~~v~~~  166 (279)
                      +.+++.+........++                              ++..+.....                 ..+.+.
T Consensus       103 i~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (670)
T 3ux8_A          103 ISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR  182 (670)
T ss_dssp             EEESSCC-----CCBHHHHTTCC-------------------------CC--------------------------CHHH
T ss_pred             eEecCchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Confidence            66666543211000000                              0000000000                 000001


Q ss_pred             HHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCC--ccEEEEeCCccchhccChhhHHHH
Q 023675          167 AKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGD--FIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       167 ~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~--~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ..++...++.     .....+|+++++| .+||+++.+|+  +  ++||||++.|+......+++.
T Consensus       183 ~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~l--LlLDEPtsgLD~~~~~~l~~~  246 (670)
T 3ux8_A          183 LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL--YVLDEPSIGLHQRDNDRLIAT  246 (670)
T ss_dssp             HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCE--EEEECTTTTCCGGGHHHHHHH
T ss_pred             HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCE--EEEECCccCCCHHHHHHHHHH
Confidence            1112233321     2355689999999 99999999887  7  999999999999988775543

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=99.34  E-value=3.6e-13  Score=128.19  Aligned_cols=175  Identities=19%  Similarity=0.214  Sum_probs=102.8

Q ss_pred             CccccccCccccccccccccchhhhhhhhcccccccccccccccCCCCe--EEeecceeecCCcce--eccCCeEEEEEc
Q 023675           34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNI--LWHKNSVDKRDRQQL--LQQKGCVIWITG  109 (279)
Q Consensus        34 ~~~~~~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~sl--~i~~g~~i~lvG  109 (279)
                      .|.-++.+|+|.++|+.++..     .+...++|+.+...+..+  .++  .|..-.+...-+..+  ..++|.+|+|+|
T Consensus       330 ~~~y~~~~g~~i~~d~~p~~~-----~~~~~iSgt~IR~~Lr~G--~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~G  402 (511)
T 1g8f_A          330 MVTYLPDEDRYAPIDQIDTTK-----TRTLNISGTELRRRLRVG--GEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGN  402 (511)
T ss_dssp             CEEEEGGGTEEEEGGGCSSSC-----CCCBCCCHHHHHHHHHHT--CCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECT
T ss_pred             ceeEecccCeEEEcccCCCCc-----ccccccCHHHHHHHHhCC--CCCCccccChhhHHHHHHhcccccccceEEEecc
Confidence            666669999999999999731     011112333221111101  111  111111111111122  357889999999


Q ss_pred             CCCChHHHHHHHHHHcccc-C-CccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHH
Q 023675          110 LSGSGKSTLACALSQALHW-R-GKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRK  187 (279)
Q Consensus       110 ~sGsGKSTl~~~L~~~l~~-~-~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~  187 (279)
                      +|||||||++++|++.|.. . +....++|||+ .           .   .    +..++..+...|..++....++ + 
T Consensus       403 lsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~-~-----------~---e----i~~va~~~~~~G~~Vv~~~~sp-~-  461 (511)
T 1g8f_A          403 SLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN-K-----------T---E----LLSLIQDFIGSGSGLIIPDQWE-D-  461 (511)
T ss_dssp             TCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT-C-----------H---H----HHTTHHHHHHTTCEEEESSCCC-G-
T ss_pred             cCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC-c-----------H---H----HHHHHHHHHhcCCeEEEecCCH-H-
Confidence            9999999999999999954 2 24456889886 1           0   0    2223334445565555555444 1 


Q ss_pred             HHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCCHHHHHHHH
Q 023675          188 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETV  267 (279)
Q Consensus       188 ~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~I  267 (279)
                         ..|.++....|++++                                    .|..++++||+   +..++++++++|
T Consensus       462 ---~~R~~l~~g~fv~v~------------------------------------~p~~adI~IDT---s~~s~eevV~~I  499 (511)
T 1g8f_A          462 ---DKDSVVGKQNVYLLD------------------------------------TSSSADIQLES---ADEPISHIVQKV  499 (511)
T ss_dssp             ---GGGGGSCCTTEEEEE------------------------------------SSTTCSEECSS---TTCCHHHHHHHH
T ss_pred             ---HHHHHhcCCCEEEEe------------------------------------cCCCCcEEEEC---CCCCHHHHHHHH
Confidence               233344333453322                                    23346799988   789999999999


Q ss_pred             HHHHHhCCCcc
Q 023675          268 VSYLDENGFLR  278 (279)
Q Consensus       268 l~~l~~~~~~~  278 (279)
                      +++|+++|+++
T Consensus       500 l~~L~~~g~~~  510 (511)
T 1g8f_A          500 VLFLEDNGFFV  510 (511)
T ss_dssp             HHHHHHTTSCC
T ss_pred             HHHHHhcCCCC
Confidence            99999998874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.34  E-value=7.7e-13  Score=127.11  Aligned_cols=125  Identities=18%  Similarity=0.179  Sum_probs=82.0

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE-----------EEcCeecccc--------c--ccCCCCCcc--
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-----------ILDGDNCRHG--------L--NRDLSFKAE--  154 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i-----------~ldgd~i~~~--------~--~~~~~~~~~--  154 (279)
                      ..++|++++|+||||||||||+++|+|++ .|+.|.+           .++|.++...        .  .....+...  
T Consensus        21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~-~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~   99 (538)
T 3ozx_A           21 TPKNNTILGVLGKNGVGKTTVLKILAGEI-IPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS   99 (538)
T ss_dssp             CCCTTEEEEEECCTTSSHHHHHHHHTTSS-CCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence            34689999999999999999999999999 8999988           5666654210        0  000111100  


Q ss_pred             -----cHHHHHHHH---HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhH
Q 023675          155 -----DRVENIRRI---GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL  221 (279)
Q Consensus       155 -----~~~~~~~~v---~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l  221 (279)
                           .....+...   .....++...++..    .+..+|+++++| .+|++++.+|++  ++||||++.|+......+
T Consensus       100 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~i--lllDEPts~LD~~~~~~l  177 (538)
T 3ozx_A          100 KFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADV--YIFDQPSSYLDVRERMNM  177 (538)
T ss_dssp             TTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHHHHHHH
T ss_pred             hhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECCcccCCHHHHHHH
Confidence                 111111100   00112222233322    345689999999 999999999998  999999999999877765


Q ss_pred             HHHH
Q 023675          222 YKLA  225 (279)
Q Consensus       222 ~~~~  225 (279)
                      ++.+
T Consensus       178 ~~~l  181 (538)
T 3ozx_A          178 AKAI  181 (538)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.29  E-value=1.5e-11  Score=119.52  Aligned_cols=124  Identities=16%  Similarity=0.069  Sum_probs=77.1

Q ss_pred             CcceeccCC-----eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCC--CCCcccHHHHHHH----
Q 023675           94 RQQLLQQKG-----CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL--SFKAEDRVENIRR----  162 (279)
Q Consensus        94 ~~sl~i~~g-----~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~--~~~~~~~~~~~~~----  162 (279)
                      +.+|++.+|     ++++|+|+||||||||+++|+|++ .|++|... ....+. ......  .+.. ...+.+..    
T Consensus       365 ~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~-~p~~G~~~-~~~~i~-~~~q~~~~~~~~-tv~e~~~~~~~~  440 (608)
T 3j16_B          365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL-KPDEGQDI-PKLNVS-MKPQKIAPKFPG-TVRQLFFKKIRG  440 (608)
T ss_dssp             SCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS-CCSBCCCC-CSCCEE-EECSSCCCCCCS-BHHHHHHHHCSS
T ss_pred             ceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC-CCCCCcCc-cCCcEE-EecccccccCCc-cHHHHHHHHhhc
Confidence            457888877     789999999999999999999999 88888621 111110 000000  0100 00010000    


Q ss_pred             ----HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675          163 ----IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       163 ----v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                          .......+...++.    ..+..+|++++|| .+|++++.+|++  ++||||+..++......+++
T Consensus       441 ~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~l--LlLDEPT~gLD~~~~~~i~~  508 (608)
T 3j16_B          441 QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADI--YLIDEPSAYLDSEQRIICSK  508 (608)
T ss_dssp             TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSE--EEECCTTTTCCHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCCCCCHHHHHHHHH
Confidence                00011111122221    2345689999999 999999999998  99999999999887665443

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.26  E-value=1.4e-11  Score=121.38  Aligned_cols=44  Identities=16%  Similarity=0.135  Sum_probs=36.1

Q ss_pred             hcccCChHHHHH-HHHHHhCCCC---CccEEEEeCCccchhccChhhHHH
Q 023675          178 IACLISPYRKDR-DACRSMLPEG---DFIEVFMDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       178 i~~~~~~~~~~r-~~ar~l~~~~---~~i~i~ld~p~~~l~~R~~~~l~~  223 (279)
                      .+..+|+++++| .+||+++.+|   ++  ++||||+..++......+++
T Consensus       540 ~~~~LSgG~~qrv~iAraL~~~p~~p~l--lllDEPt~~LD~~~~~~i~~  587 (670)
T 3ux8_A          540 PATTLSGGEAQRVKLAAELHRRSNGRTL--YILDEPTTGLHVDDIARLLD  587 (670)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHSCCCSCEE--EEEESTTTTCCHHHHHHHHH
T ss_pred             CchhCCHHHHHHHHHHHHHhhCCCCCcE--EEEeCCCCCCCHHHHHHHHH
Confidence            355689999999 9999998876   36  99999999999887766544

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.22  E-value=5.6e-12  Score=104.22  Aligned_cols=161  Identities=16%  Similarity=0.143  Sum_probs=86.9

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc--cCCCCCcccHHHH---HHHHHHHHHHHHh
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKAEDRVEN---IRRIGEVAKLFAD  172 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~--~~~~~~~~~~~~~---~~~v~~~~~~~~~  172 (279)
                      .+++|++++|+|+|||||||++++|++.   ++.|.|+++++++.....  ...++.++.....   ...+...+..+..
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~   81 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAK   81 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhc
Confidence            4678999999999999999999999997   457899999998743221  1124444322211   1112111222222


Q ss_pred             CCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCC-------CCccccCcCCCCCC
Q 023675          173 AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK-------GFTGIDDPYEPPLN  245 (279)
Q Consensus       173 ~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~-------~~~~~r~~~~~~~~  245 (279)
                      .+...+...... ...++..+.+  ...+..+++.++...+..|...+      ..++.       .+......++..  
T Consensus        82 ~~~~~~~~~~~~-~~~l~~~~~~--~~~~~~ls~~~~~~v~~~R~~~r------~~~~lld~~~~~~~~~~~~~l~~~--  150 (191)
T 1zp6_A           82 EGYFVILDGVVR-PDWLPAFTAL--ARPLHYIVLRTTAAEAIERCLDR------GGDSLSDPLVVADLHSQFADLGAF--  150 (191)
T ss_dssp             TSCEEEECSCCC-TTTTHHHHTT--CSCEEEEEEECCHHHHHHHHHTT------CTTSCCCHHHHHHHHHHTTCCGGG--
T ss_pred             cCCeEEEeccCc-HHHHHHHHhc--CCCeEEEEecCCHHHHHHHHHhc------CCCccCCHHHHHHHHHHHhccCcc--
Confidence            232222221110 0111111111  11233478888877776665321      11100       011112333332  


Q ss_pred             CceEEEccCCCCCCHHHHHHHHHHHHHhCC
Q 023675          246 CEIVLKQMGDDCPSPADMVETVVSYLDENG  275 (279)
Q Consensus       246 a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~  275 (279)
                      ++++|++   +..++++++++|++.+....
T Consensus       151 ~~~~i~t---~~~~~~~~~~~i~~~l~~~~  177 (191)
T 1zp6_A          151 EHHVLPV---SGKDTDQALQSAINALQSGR  177 (191)
T ss_dssp             GGGEEEC---TTCCTTTTTTTTHHHHHHTT
T ss_pred             cccEEEC---CCCCHHHHHHHHHHHHHhhh
Confidence            4578888   66788999999999887653

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.22  E-value=7.6e-11  Score=102.91  Aligned_cols=162  Identities=14%  Similarity=0.084  Sum_probs=90.2

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHH-HHHHHHhCCcchh
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGE-VAKLFADAGVICI  178 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~i  178 (279)
                      .++.+|+|+|++||||||+++.|+..+...+...+++++|.++..+..   |.............. +...+..  ..++
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~---~~~~~e~~~~~~~~~~i~~~l~~--~~vI   76 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV---WKEKYEEFIKKSTYRLIDSALKN--YWVI   76 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS---CCGGGHHHHHHHHHHHHHHHHTT--SEEE
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh---hhHHHHHHHHHHHHHHHHHHhhC--CEEE
Confidence            357799999999999999999999986434334455699888654432   333221111111111 1222222  3344


Q ss_pred             cccCChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChhhH-------HHHHhCCCCCCCccccCcCCCCCCCceE
Q 023675          179 ACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKGL-------YKLAREGKVKGFTGIDDPYEPPLNCEIV  249 (279)
Q Consensus       179 ~~~~~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~~l-------~~~~~~~~~~~~~~~r~~~~~~~~a~~~  249 (279)
                      ++........+..+..++.  ......|++++|.+.+.+|..++-       +....     ..+....+.|.+..++++
T Consensus        77 iD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~l~~~~-----~~~e~~~~~~~~~~~~~~  151 (260)
T 3a4m_A           77 VDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMY-----EKFDEPGKKYKWDEPFLI  151 (260)
T ss_dssp             ECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSCHHHHHHHH-----HHCCCTTSSCGGGCCSEE
T ss_pred             EeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCCHHHHHHHH-----HHhcCccccCCCCCCEEE
Confidence            4443333344444443322  113456899999999999875420       10000     000111112221236789


Q ss_pred             EEccCCCC-CCHHHHHHHHHHHHHhC
Q 023675          250 LKQMGDDC-PSPADMVETVVSYLDEN  274 (279)
Q Consensus       250 i~~~~~~~-~~~~e~~~~Il~~l~~~  274 (279)
                      ||+   +. .+++++++.|+..+...
T Consensus       152 Id~---~~~~~~~ei~~~I~~~l~~~  174 (260)
T 3a4m_A          152 IDT---TKDIDFNEIAKKLIEKSKEI  174 (260)
T ss_dssp             EET---TSCCCHHHHHHHHHHHHTSC
T ss_pred             EeC---CCCCCHHHHHHHHHhcccCC
Confidence            988   55 58999999999887653

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.21  E-value=2.1e-11  Score=100.80  Aligned_cols=154  Identities=14%  Similarity=0.045  Sum_probs=82.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHHHHHHHHHHhCCcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRIGEVAKLFADAGVI  176 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~  176 (279)
                      |++++|+|+|||||||+++.|++.    ..|.++++++++.....  .++.++..     ...++.+...+..+...+..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   75 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIEGDIINHMVV--GGYRPPWESDELLALTWKNITDLTVNFLLAQND   75 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH----SSSEEEEEHHHHHTTCC--TTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcc----cCCeEEEcccchhhhhc--cccccCccchhHHHHHHHHHHHHHHHHHhcCCc
Confidence            689999999999999999999873    35789999998754322  12222211     11222222233333333433


Q ss_pred             hhcccCChHHHHHHHHHHhC----CCCCccEEEEeCCccchhccChhhHHHH-HhCCCCCCCccccCcCCCCCCCceEEE
Q 023675          177 CIACLISPYRKDRDACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKL-AREGKVKGFTGIDDPYEPPLNCEIVLK  251 (279)
Q Consensus       177 ~i~~~~~~~~~~r~~ar~l~----~~~~~i~i~ld~p~~~l~~R~~~~l~~~-~~~~~~~~~~~~r~~~~~~~~a~~~i~  251 (279)
                      .+...... ...++..+.++    ....+..+++++|.+.+.+|...+.... ........ ......++..  +..+|+
T Consensus        76 ~ild~~~~-~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~~~--~~~ii~  151 (189)
T 2bdt_A           76 VVLDYIAF-PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEEFESKGID--ERYFYN  151 (189)
T ss_dssp             EEEESCCC-HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHHHHHTTCC--TTSEEE
T ss_pred             EEEeeccC-HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHHHhhcCCC--ccEEEe
Confidence            33333221 22223233332    1113444789999999999886442210 00000001 1112222322  457888


Q ss_pred             ccCCCCC---CHHHHHHHHH
Q 023675          252 QMGDDCP---SPADMVETVV  268 (279)
Q Consensus       252 ~~~~~~~---~~~e~~~~Il  268 (279)
                      +   ++.   ++++++++|+
T Consensus       152 t---sh~~~~~~e~~~~~i~  168 (189)
T 2bdt_A          152 T---SHLQPTNLNDIVKNLK  168 (189)
T ss_dssp             C---SSSCGGGHHHHHHHHH
T ss_pred             C---CCCChhhHHHHHHHHh
Confidence            7   666   7889999988

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.21  E-value=9.7e-11  Score=118.69  Aligned_cols=139  Identities=17%  Similarity=0.198  Sum_probs=87.2

Q ss_pred             CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHc-cc-cC--C-ccEEEEcCeecccccccCC
Q 023675           80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQA-LH-WR--G-KLTYILDGDNCRHGLNRDL  149 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~-l~-~~--~-~G~i~ldgd~i~~~~~~~~  149 (279)
                      ..+...+++++|..+     .||++.+|++++|+|+||||||||+++|++- +. .+  . .+.+++..+ .. .     
T Consensus       434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~-~~-~-----  506 (986)
T 2iw3_A          434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHD-ID-G-----  506 (986)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCC-CC-C-----
T ss_pred             ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEccc-cc-c-----
Confidence            346666778888643     4999999999999999999999999999952 10 00  0 011122111 00 0     


Q ss_pred             CCCcccHHHHHHH-----HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675          150 SFKAEDRVENIRR-----IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       150 ~~~~~~~~~~~~~-----v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~  218 (279)
                      .+......+++..     ...+...+...++.     .....+|+|+++| .++++++.+|++  ++||||++.|+....
T Consensus       507 ~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~l--LLLDEPTs~LD~~~~  584 (986)
T 2iw3_A          507 THSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADI--LLLDEPTNHLDTVNV  584 (986)
T ss_dssp             CCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSE--EEEESTTTTCCHHHH
T ss_pred             cccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEECCccCCCHHHH
Confidence            0000000111100     01122233344441     1345689999999 999999999998  999999999999888


Q ss_pred             hhHHHHHhC
Q 023675          219 KGLYKLARE  227 (279)
Q Consensus       219 ~~l~~~~~~  227 (279)
                      +.+.+.++.
T Consensus       585 ~~l~~~L~~  593 (986)
T 2iw3_A          585 AWLVNYLNT  593 (986)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777766554

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.17  E-value=3.1e-12  Score=108.92  Aligned_cols=45  Identities=22%  Similarity=0.188  Sum_probs=32.2

Q ss_pred             cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++.||++++|++++|+||||||||||+++|++++  |  |.|.+ |.++
T Consensus        13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p--G~i~~-g~~~   57 (218)
T 1z6g_A           13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P--NYFYF-SVSC   57 (218)
T ss_dssp             ---------CCCCEEEECSTTSSHHHHHHHHHHHS--T--TTEEE-CCCE
T ss_pred             ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C--CcEEE-eecc
Confidence            35678999999999999999999999999999987  3  78888 6544

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.16  E-value=9.5e-11  Score=101.86  Aligned_cols=35  Identities=31%  Similarity=0.242  Sum_probs=29.9

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHH---HccccCCccEEE
Q 023675          100 QKGCVIWITGLSGSGKSTLACALS---QALHWRGKLTYI  135 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~---~~l~~~~~G~i~  135 (279)
                      ++|++|+|+|+|||||||++++|+   ++. .++.|.++
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~-~~d~g~i~   62 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWR-LLDSGAIY   62 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCE-EEEHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCC-cCCCCcee
Confidence            679999999999999999999999   555 55666666

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.14  E-value=1.4e-10  Score=95.68  Aligned_cols=164  Identities=18%  Similarity=0.158  Sum_probs=83.7

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHH-----HHHHHHHHHHHhCC
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI-----RRIGEVAKLFADAG  174 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~  174 (279)
                      ++|.+|+|+|++||||||+++.|+..+..+     +++.|.++..+...+..........+     ..+..........|
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~-----~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g   77 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSG   77 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCe-----EecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence            467899999999999999999999987433     78888776433222222211111111     11111122122234


Q ss_pred             cchhcccCChHHHH-HHH--HHHhCCCCCccEEEEeCCccchhccChhhHHHHHh-----CCCCC------CCccccCcC
Q 023675          175 VICIACLISPYRKD-RDA--CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR-----EGKVK------GFTGIDDPY  240 (279)
Q Consensus       175 ~~~i~~~~~~~~~~-r~~--ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~-----~~~~~------~~~~~r~~~  240 (279)
                      ..++.+........ +.+  +...... ..+.|+|++|.+.+.+|+.++-....+     ...+.      .....+.++
T Consensus        78 ~~vi~d~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  156 (193)
T 2rhm_A           78 QSLIMESNFRVDLDTERMQNLHTIAPF-TPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPL  156 (193)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHHHSCC-EEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCCC
T ss_pred             CeEEEecCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCCc
Confidence            44444433222212 122  2221112 334589999999999998644210000     00110      011112333


Q ss_pred             CCCCCCceEEEccCCCCC---CHHHHHHHHHHHHHh
Q 023675          241 EPPLNCEIVLKQMGDDCP---SPADMVETVVSYLDE  273 (279)
Q Consensus       241 ~~~~~a~~~i~~~~~~~~---~~~e~~~~Il~~l~~  273 (279)
                      +.. .++++||+   +..   ..+++++.|...+..
T Consensus       157 ~~~-~~~~~Idt---~~~~~~~~~~i~~~i~~~l~~  188 (193)
T 2rhm_A          157 PLG-GPLLTVDT---TFPEQIDMNAIVQWVRQHLQS  188 (193)
T ss_dssp             CCC-SCEEEEEC---SSGGGCCHHHHHHHHHHHHHH
T ss_pred             cCC-CCEEEEeC---CCCcccCHHHHHHHHHHHHHh
Confidence            321 36788888   443   456777777666654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.13  E-value=1.7e-12  Score=106.98  Aligned_cols=156  Identities=15%  Similarity=0.205  Sum_probs=85.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHH-HHHH-HHHHhC
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEVA-KLFADA  173 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v-~~~~-~~~~~~  173 (279)
                      .+..|+|+|++||||||+++.|+..++.+     ++|.|++.....   +....+.     ...++.+ .++. .+....
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~-----~i~~d~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   75 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRI-----LYDSDKEIEKRT---GADIAWIFEMEGEAGFRRREREMIEALCKLD   75 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHH---TSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHc---CCChhhHHHHhCHHHHHHHHHHHHHHHHhcC
Confidence            36789999999999999999999988544     888887643221   1111111     0111111 1111 122222


Q ss_pred             C-cchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccC--hhh----HHH-HHhCCCCCCCccccCcCCCCCC
Q 023675          174 G-VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD--PKG----LYK-LAREGKVKGFTGIDDPYEPPLN  245 (279)
Q Consensus       174 ~-~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~--~~~----l~~-~~~~~~~~~~~~~r~~~~~~~~  245 (279)
                      . ++..+.........++.++..     .+.|+|++|.+.+.+|+  ..+    +.. ......+......+.++|.. .
T Consensus        76 ~~vi~~gg~~~~~~~~~~~l~~~-----~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~-~  149 (185)
T 3trf_A           76 NIILATGGGVVLDEKNRQQISET-----GVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQA-M  149 (185)
T ss_dssp             SCEEECCTTGGGSHHHHHHHHHH-----EEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             CcEEecCCceecCHHHHHHHHhC-----CcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhh-c
Confidence            2 222222222333445444432     14589999999999888  321    000 00000111122234444432 1


Q ss_pred             CceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          246 CEIVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       246 a~~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      ++++|++   +..++++++++|++.+..
T Consensus       150 ad~~Idt---~~~~~~e~~~~I~~~l~~  174 (185)
T 3trf_A          150 ADLVYPT---DDLNPRQLATQILVDIKQ  174 (185)
T ss_dssp             CSEEEEC---TTCCHHHHHHHHHHHSCC
T ss_pred             CCEEEEC---CCCCHHHHHHHHHHHHHH
Confidence            6799999   778999999999988764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.12  E-value=7.6e-11  Score=106.62  Aligned_cols=125  Identities=10%  Similarity=0.020  Sum_probs=82.4

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCC
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAG  174 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  174 (279)
                      .++.+++|++++|+|+||||||||+++|++++ .|.+|.|.++|.+..       .+...  +                .
T Consensus       164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~-~~~~g~i~i~~~~e~-------~~~~~--~----------------~  217 (330)
T 2pt7_A          164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI-PKEERIISIEDTEEI-------VFKHH--K----------------N  217 (330)
T ss_dssp             HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS-CTTSCEEEEESSCCC-------CCSSC--S----------------S
T ss_pred             hhhhccCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCcEEEECCeecc-------ccccc--h----------------h
Confidence            48899999999999999999999999999999 889999999986421       11100  0                0


Q ss_pred             cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEcc
Q 023675          175 VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQM  253 (279)
Q Consensus       175 ~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~  253 (279)
                      ...+...  +++++| .+++++..+|++  +++|||.+.-    ...+++....++                .-..+.+ 
T Consensus       218 ~i~~~~g--gg~~~r~~la~aL~~~p~i--lildE~~~~e----~~~~l~~~~~g~----------------~tvi~t~-  272 (330)
T 2pt7_A          218 YTQLFFG--GNITSADCLKSCLRMRPDR--IILGELRSSE----AYDFYNVLCSGH----------------KGTLTTL-  272 (330)
T ss_dssp             EEEEECB--TTBCHHHHHHHHTTSCCSE--EEECCCCSTH----HHHHHHHHHTTC----------------CCEEEEE-
T ss_pred             EEEEEeC--CChhHHHHHHHHhhhCCCE--EEEcCCChHH----HHHHHHHHhcCC----------------CEEEEEE-
Confidence            0000001  344555 778888889988  9999998721    122333333332                1134444 


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 023675          254 GDDCPSPADMVETVVSYLD  272 (279)
Q Consensus       254 ~~~~~~~~e~~~~Il~~l~  272 (279)
                        +..+..+.+++++..-.
T Consensus       273 --H~~~~~~~~dri~~l~~  289 (330)
T 2pt7_A          273 --HAGSSEEAFIRLANMSS  289 (330)
T ss_dssp             --ECSSHHHHHHHHHHHHH
T ss_pred             --cccHHHHHhhhheehhc
Confidence              55667778888776543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.12  E-value=2.9e-11  Score=97.89  Aligned_cols=141  Identities=13%  Similarity=0.047  Sum_probs=80.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcc--
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC--  180 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~--  180 (279)
                      .+|+|+|++||||||+++.|+..+..+     ++++|.+.....        .....+.    ....+.. +..++.+  
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~-----~i~~d~~~~~~~--------~~~~~~~----~~~~l~~-~~~vi~dr~   63 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYP-----IIKGSSFELAKS--------GNEKLFE----HFNKLAD-EDNVIIDRF   63 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCC-----EEECCCHHHHTT--------CHHHHHH----HHHHHTT-CCSEEEESC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCe-----eecCcccccchh--------HHHHHHH----HHHHHHh-CCCeEEeee
Confidence            378999999999999999999988544     788887642110        0111111    1111111 1111111  


Q ss_pred             -------------cCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCC---------CccccC
Q 023675          181 -------------LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---------FTGIDD  238 (279)
Q Consensus       181 -------------~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~---------~~~~r~  238 (279)
                                   +.......+.........+.+ .|+|+.|.+.+.+|+.++      ......         .+..+.
T Consensus        64 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~i~l~~~~e~~~~R~~~r------~r~~~~~~~~~~~~~~~~~~~  136 (173)
T 3kb2_A           64 VYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAK-VVYLHADPSVIKKRLRVR------GDEYIEGKDIDSILELYREVM  136 (173)
T ss_dssp             HHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEE-EEEEECCHHHHHHHHHHH------SCSCCCHHHHHHHHHHHHHHH
T ss_pred             ecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCE-EEEEeCCHHHHHHHHHhc------CCcchhhhHHHHHHHHHHHHH
Confidence                         111122334444444344444 589999999999998542      111111         111122


Q ss_pred             cCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          239 PYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       239 ~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      +.|..  ++++|++   +..++++++++|++.++.
T Consensus       137 ~~~~~--~~~~id~---~~~~~~ev~~~I~~~~~~  166 (173)
T 3kb2_A          137 SNAGL--HTYSWDT---GQWSSDEIAKDIIFLVEL  166 (173)
T ss_dssp             HTCSS--CEEEEET---TTSCHHHHHHHHHHHHHH
T ss_pred             hhcCC--CEEEEEC---CCCCHHHHHHHHHHHHhC
Confidence            33332  6688887   667999999999998875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.11  E-value=3e-11  Score=99.02  Aligned_cols=160  Identities=15%  Similarity=0.051  Sum_probs=75.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE-c----Ceecccccc-cCCCCCcccHHHHHHHHHH-HHHHHHhC
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL-D----GDNCRHGLN-RDLSFKAEDRVENIRRIGE-VAKLFADA  173 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l-d----gd~i~~~~~-~~~~~~~~~~~~~~~~v~~-~~~~~~~~  173 (279)
                      ++.+|+|+|++||||||+++.|+..+..+     ++ |    |+.+++.+. ....|....  .+...+.+ +...+...
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~d~~~~g~~i~~~~~~g~~~~~~~~--~~~~~~~~~i~~~l~~~   76 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGS-----FVFEPEEMGQALRKLTPGFSGDPQEHP--MWIPLMLDALQYASREA   76 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTC-----EECCTHHHHHHHHHTSTTCCSCGGGST--THHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCC-----EEEchhhhHHHHHHhCccccchhhhhH--HHHHHHHHHHHHHHHhC
Confidence            57899999999999999999999887543     34 5    333332221 111111111  11111111 12223332


Q ss_pred             CcchhcccCChHHHHHHHHHHhC--CCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEE
Q 023675          174 GVICIACLISPYRKDRDACRSML--PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLK  251 (279)
Q Consensus       174 ~~~~i~~~~~~~~~~r~~ar~l~--~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~  251 (279)
                      +..++.+........++..+..+  ....+..|+|++|.+.+.+|+.++-........+..+...+.++ ..  ++ +||
T Consensus        77 g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~~~~~~~~~~~~~-~~--~~-~Id  152 (183)
T 2vli_A           77 AGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVNVGTVEDRLNELRGE-QF--QT-HID  152 (183)
T ss_dssp             SSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CCHHHHHHHHHHHTSG-GG--CS-EEE
T ss_pred             CCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchhHHHHHHHHHhhccc-cc--ce-Eee
Confidence            43333332221122222222222  11223458999999999999754421000000011111112223 22  34 888


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHhC
Q 023675          252 QMGDDCPSPADMVETVVSYLDEN  274 (279)
Q Consensus       252 ~~~~~~~~~~e~~~~Il~~l~~~  274 (279)
                      +   +..++++++++|++.+...
T Consensus       153 ~---~~~~~~~~~~~I~~~l~~~  172 (183)
T 2vli_A          153 T---AGLGTQQVAEQIAAQVGLT  172 (183)
T ss_dssp             C---TTCCHHHHHHHHHHHHTCC
T ss_pred             C---CCCCHHHHHHHHHHHHHHh
Confidence            7   6689999999999998753

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.09  E-value=6.9e-10  Score=92.46  Aligned_cols=41  Identities=27%  Similarity=0.276  Sum_probs=32.2

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      |+.+.+|++++|+||||||||||+++|++++ .    .+.+++.++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~----~~~~~~~~~   41 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A----EIKISISHT   41 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S----SEEECCCEE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C----CeEEeceec
Confidence            4677899999999999999999999999987 2    466777655

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.09  E-value=1.3e-12  Score=113.76  Aligned_cols=121  Identities=12%  Similarity=0.103  Sum_probs=70.9

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc------ccCCCCCcccHHH--HHHHHHHHHHH
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLSFKAEDRVE--NIRRIGEVAKL  169 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~------~~~~~~~~~~~~~--~~~~v~~~~~~  169 (279)
                      ..++|.+++|+|+|||||||+++.|++.+.   .+.+++|+|.++..+      ....+....+...  ....+..+...
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~  104 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTK  104 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHH
Confidence            566789999999999999999999999883   356789999987542      2233433333222  11222333333


Q ss_pred             HHhCCcchhcccCChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChhhH
Q 023675          170 FADAGVICIACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKGL  221 (279)
Q Consensus       170 ~~~~~~~~i~~~~~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~~l  221 (279)
                      +...+...+++.......++......+.  ...+..+++++|.+.+.+|...+.
T Consensus       105 ~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~  158 (253)
T 2p5t_B          105 LSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY  158 (253)
T ss_dssp             HHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred             HHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence            3344433444433222222322222222  222334688999999999976553

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.08  E-value=3.7e-12  Score=107.97  Aligned_cols=107  Identities=16%  Similarity=0.087  Sum_probs=62.9

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---cccccCCCCCcccHHHHH-HHHHHHHHHHHh-C
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKAEDRVENI-RRIGEVAKLFAD-A  173 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~-~  173 (279)
                      +++|++++|+||||||||||+++|+++  .|++|.|..  .++.   ......++|.++...+.+ .........+.. .
T Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~   94 (208)
T 3b85_A           19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ--ALQSKQVSR--IILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMV   94 (208)
T ss_dssp             HHHCSEEEEECCTTSSTTHHHHHHHHH--HHHTTSCSE--EEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTS
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcC--CCcCCeeee--EEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999998  577888842  2221   112234566655432222 110000000000 0


Q ss_pred             C---cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675          174 G---VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV  212 (279)
Q Consensus       174 ~---~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~  212 (279)
                      .   +...... ..++++| .++++++.+|++  ++||||++.
T Consensus        95 ~~~~~~~~l~~-glGq~qrv~lAraL~~~p~l--llLDEPts~  134 (208)
T 3b85_A           95 EPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAF--VILDEAQNT  134 (208)
T ss_dssp             CTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEE--EEECSGGGC
T ss_pred             cHHHHHHHHHh-CCchHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence            0   0001111 2255666 889999999988  999999999

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.07  E-value=9.5e-12  Score=101.21  Aligned_cols=159  Identities=17%  Similarity=0.244  Sum_probs=75.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc-cCCCCCcccH-HHHHHHH-HHHHHHHHhCCcch
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKAEDR-VENIRRI-GEVAKLFADAGVIC  177 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~-~~~~~~~~~~-~~~~~~v-~~~~~~~~~~~~~~  177 (279)
                      .|.+++|+|+|||||||+++.|++.+..     +++|+|.+..... ..+....+.. ...+... ......+.......
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~-----~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v   77 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM-----EFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIV   77 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC-----EEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeE
Confidence            4678999999999999999999999843     4888876632111 0000000000 0001000 01111111111111


Q ss_pred             hcc--cCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH-hCCC-----CCCCccccCcCCCCCCCceE
Q 023675          178 IAC--LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA-REGK-----VKGFTGIDDPYEPPLNCEIV  249 (279)
Q Consensus       178 i~~--~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~-~~~~-----~~~~~~~r~~~~~~~~a~~~  249 (279)
                      +..  ........++.++..    + +.+++++|.+.+.+|+.++-.... ....     +......+.++|.. .++++
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~----~-~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~-~a~~~  151 (173)
T 1kag_A           78 LATGGGSVKSRETRNRLSAR----G-VVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEE-IADVT  151 (173)
T ss_dssp             EECCTTGGGSHHHHHHHHHH----S-EEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHH-HCSEE
T ss_pred             EECCCeEEecHHHHHHHHhC----C-EEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHh-hCCEE
Confidence            211  111122333333321    2 348999999999999864311000 0000     01111223344432 26788


Q ss_pred             EEccCCCCCCHHHHHHHHHHHHHh
Q 023675          250 LKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       250 i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      |++   +..++++++++|+..+.+
T Consensus       152 id~---~~~~~~~~~~~i~~~l~~  172 (173)
T 1kag_A          152 IRT---DDQSAKVVANQIIHMLES  172 (173)
T ss_dssp             C--------CHHHHHHHHHHHHC-
T ss_pred             EEC---CCCCHHHHHHHHHHHHHh
Confidence            988   668999999999988753

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.06  E-value=2.9e-10  Score=99.54  Aligned_cols=44  Identities=27%  Similarity=0.288  Sum_probs=40.4

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCC-ccEEEEcCeecc
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCR  142 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-~G~i~ldgd~i~  142 (279)
                      .+++|++++|+|||||||||++++|++++ .|. +|.|.++|+++.
T Consensus        21 ~i~~g~~v~i~Gp~GsGKSTll~~l~g~~-~~~~~G~I~~~g~~i~   65 (261)
T 2eyu_A           21 CHRKMGLILVTGPTGSGKSTTIASMIDYI-NQTKSYHIITIEDPIE   65 (261)
T ss_dssp             GGCSSEEEEEECSTTCSHHHHHHHHHHHH-HHHCCCEEEEEESSCC
T ss_pred             hhCCCCEEEEECCCCccHHHHHHHHHHhC-CCCCCCEEEEcCCcce
Confidence            38999999999999999999999999999 676 899999998874

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.05  E-value=2.2e-10  Score=114.82  Aligned_cols=47  Identities=32%  Similarity=0.355  Sum_probs=40.2

Q ss_pred             CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHH-HHHcc
Q 023675           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACA-LSQAL  126 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~-L~~~l  126 (279)
                      ..++++++++...++.||++++|++++|+|+||||||||++. |.+.+
T Consensus       501 ~~L~v~~l~~~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          501 GWLELNGVTRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             CEEEEEEEEETTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             ceEEEEeeeecccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            347888887766677799999999999999999999999996 77654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.02  E-value=3.7e-09  Score=87.99  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=28.7

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCcc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL  132 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G  132 (279)
                      +++++|++++|+|+|||||||+++.|++.+ .|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~-~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP-STSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCT-TCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhh-CCCeE
Confidence            357899999999999999999999999998 55444

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.99  E-value=5.7e-10  Score=103.30  Aligned_cols=43  Identities=12%  Similarity=-0.123  Sum_probs=36.6

Q ss_pred             CChHHHHH-HHHHHhCCCC--CccEEEEeCCccchhccChhhHHHHHh
Q 023675          182 ISPYRKDR-DACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       182 ~~~~~~~r-~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      +|+++++| .++++++.++  ++  ++||||+..|+......+.+.++
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~--LlLDEpt~~LD~~~~~~l~~~L~  341 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPS--VVFDEVDAGIGGAAAIAVAEQLS  341 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSE--EEESSTTTTCCHHHHHHHHHHHH
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCE--EEEECCCCCCCHHHHHHHHHHHH
Confidence            68999998 8899999888  77  99999999999988877665543

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.97  E-value=1.9e-11  Score=100.01  Aligned_cols=150  Identities=17%  Similarity=0.192  Sum_probs=79.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHH-HHHHHHHHhCCcch
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEVAKLFADAGVIC  177 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v-~~~~~~~~~~~~~~  177 (279)
                      .++|+|+|||||||+++.|++.+..     .++|.|++.....   +....+.     ...++.. ..+...+...... 
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~-----~~~d~d~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~-   76 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDL-----VFLDSDFLIEQKF---NQKVSEIFEQKRENFFREQEQKMADFFSSCEKA-   76 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHHHHHHH---TSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSE-
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCC-----CEEcccHHHHHHc---CCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCE-
Confidence            5899999999999999999998853     3889887642211   1111110     1111111 1111112111111 


Q ss_pred             hcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCC------CCCCccccCcCCCCCCCceEEE
Q 023675          178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGK------VKGFTGIDDPYEPPLNCEIVLK  251 (279)
Q Consensus       178 i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~------~~~~~~~r~~~~~~~~a~~~i~  251 (279)
                      ++....+....+.     +.... ..|+|+.|.+.+.+|..++.+.  ....      +......+.++|.. .++++||
T Consensus        77 vi~~g~~~~~~~~-----l~~~~-~~i~l~~~~e~~~~R~~~r~~~--~r~~~~~~~~i~~~~~~r~~~y~~-~~~~~Id  147 (175)
T 1via_A           77 CIATGGGFVNVSN-----LEKAG-FCIYLKADFEYLKKRLDKDEIS--KRPLFYDEIKAKKLYNERLSKYEQ-KANFILN  147 (175)
T ss_dssp             EEECCTTGGGSTT-----GGGGC-EEEEEECCHHHHTTCCCGGGTT--TSCTTCCHHHHHHHHHHHHHHHHH-HCSEEEE
T ss_pred             EEECCCCEehhhH-----HhcCC-EEEEEeCCHHHHHHHHhcccCC--CCCCcccHHHHHHHHHHHHHHHHh-cCCEEEE
Confidence            1111111000011     12222 3589999999999998544210  0001      11112223445532 2578999


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHhC
Q 023675          252 QMGDDCPSPADMVETVVSYLDEN  274 (279)
Q Consensus       252 ~~~~~~~~~~e~~~~Il~~l~~~  274 (279)
                      +   +..++++++++|++.++.-
T Consensus       148 t---~~~~~eev~~~I~~~l~~~  167 (175)
T 1via_A          148 I---ENKNIDELLSEIKKVIKEG  167 (175)
T ss_dssp             C---TTCCHHHHHHHHHHHHC--
T ss_pred             C---CCCCHHHHHHHHHHHHHhc
Confidence            8   7789999999999988753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.96  E-value=1.8e-10  Score=93.38  Aligned_cols=47  Identities=19%  Similarity=0.215  Sum_probs=42.5

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      ..||++++|++++|+|+||||||||+++|++.+  |.+|.|.++|.++.
T Consensus        25 ~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~   71 (158)
T 1htw_A           25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLV   71 (158)
T ss_dssp             HHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCE
T ss_pred             ccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeee
Confidence            348899999999999999999999999999998  67899999987763

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.94  E-value=1.2e-09  Score=97.55  Aligned_cols=48  Identities=27%  Similarity=0.304  Sum_probs=43.3

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      ..+|.+++|++++|+|+|||||||+++.|++++ .+.+|.|.++|.++.
T Consensus        92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~g~V~l~g~d~~  139 (302)
T 3b9q_A           92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDTF  139 (302)
T ss_dssp             SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCCS
T ss_pred             ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeeccc
Confidence            347788999999999999999999999999999 688999999998763

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.92  E-value=1.6e-09  Score=91.82  Aligned_cols=36  Identities=44%  Similarity=0.674  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+.+++|+|+|||||||+++.|++.++.+     ++|.+++
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~-----~~d~g~i   39 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQWH-----LLDSGAI   39 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCcce
Confidence            35789999999999999999999987432     5555444

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.90  E-value=7.1e-10  Score=91.50  Aligned_cols=154  Identities=18%  Similarity=0.137  Sum_probs=82.0

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHc-cccCCccEEEEcCeecccc--cccCCC--CCcc-----cHHHHHHHHHH
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQA-LHWRGKLTYILDGDNCRHG--LNRDLS--FKAE-----DRVENIRRIGE  165 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~-l~~~~~G~i~ldgd~i~~~--~~~~~~--~~~~-----~~~~~~~~v~~  165 (279)
                      |+..++|..++|+|++||||||+++.|+.. +     |..++|.|++...  ....++  +...     .....+..   
T Consensus         4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~-----g~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---   75 (184)
T 1y63_A            4 SMEQPKGINILITGTPGTGKTSMAEMIAAELD-----GFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDF---   75 (184)
T ss_dssp             --CCCSSCEEEEECSTTSSHHHHHHHHHHHST-----TEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHH---
T ss_pred             CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHH---
Confidence            667788999999999999999999999998 4     3447887765221  111111  0000     01111112   


Q ss_pred             HHHHHHhCCcchhcccCChHHHHHHHHHHhCCC--CCccEEEEeCCccchhccChhh-----HHHH-HhCCCCCCCcccc
Q 023675          166 VAKLFADAGVICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG-----LYKL-AREGKVKGFTGID  237 (279)
Q Consensus       166 ~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~--~~~i~i~ld~p~~~l~~R~~~~-----l~~~-~~~~~~~~~~~~r  237 (279)
                      +.......+.. ++.....         .++..  .+ ..|++++|.+.+.+|+.++     .... .....+..+...+
T Consensus        76 l~~~~~~~g~~-vi~~~~~---------~~~~~~~~~-~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~  144 (184)
T 1y63_A           76 MEPIMVSRGNH-VVDYHSS---------ELFPERWFH-MVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEA  144 (184)
T ss_dssp             HHHHHTSSSEE-EEECSCC---------TTSCGGGCS-EEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHhccCCE-EEeCchH---------hhhhhccCC-EEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHH
Confidence            22222111211 1111110         11111  22 3489999999999997543     1111 1111122223334


Q ss_pred             CcCCCCCCCceEEEccCCCCCCHHHH---HHHHHHHHHhC
Q 023675          238 DPYEPPLNCEIVLKQMGDDCPSPADM---VETVVSYLDEN  274 (279)
Q Consensus       238 ~~~~~~~~a~~~i~~~~~~~~~~~e~---~~~Il~~l~~~  274 (279)
                      .++|.   ++++|++   +..+++++   +++|++.+..+
T Consensus       145 ~~~y~---~~~vi~~---n~~~~~~~~~~v~~i~~~l~~~  178 (184)
T 1y63_A          145 RDAYE---DDIVLVR---ENDTLEQMAATVEEIRERVEVL  178 (184)
T ss_dssp             HHHSC---GGGEEEE---ECSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhc---cCcEEEC---CCCCHHHHHHHHHHHHHHHHHH
Confidence            55554   3678887   66789888   88888777653

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.90  E-value=4.4e-09  Score=106.13  Aligned_cols=43  Identities=26%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHH
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS  123 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~  123 (279)
                      .++++++......+.||++++|++++|+|+||||||||++.|.
T Consensus       629 ~L~v~~l~~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          629 WLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             EEEEEEECSSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             EEEEecCcccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            4778887666667789999999999999999999999999853

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.90  E-value=1.7e-10  Score=94.60  Aligned_cols=149  Identities=15%  Similarity=0.116  Sum_probs=82.4

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--c---cCCCCCc-ccHHHHHHHHHHHHHHHHh
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--N---RDLSFKA-EDRVENIRRIGEVAKLFAD  172 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~---~~~~~~~-~~~~~~~~~v~~~~~~~~~  172 (279)
                      ..++..|+|+|++||||||+++.|+..++.     .+++.+++....  .   ....+.. .........   +...+..
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   79 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELASKSGL-----KYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDE---LDNQMRE   79 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHH---HHHHHHH
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHHHHhCC-----eEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHH---HHHHHhc
Confidence            446788999999999999999999988742     367766542111  0   0001111 011111122   2222233


Q ss_pred             CCcchhcccCChHHHHHHHHHHhCCC--CCccEEEEeCCccchhccChhh-----HHH-HHhCCCCCCCccccCcCCCCC
Q 023675          173 AGVICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG-----LYK-LAREGKVKGFTGIDDPYEPPL  244 (279)
Q Consensus       173 ~~~~~i~~~~~~~~~~r~~ar~l~~~--~~~i~i~ld~p~~~l~~R~~~~-----l~~-~~~~~~~~~~~~~r~~~~~~~  244 (279)
                      .+.+.  ....         +..+..  +. ..|+|++|.+.+.+|+.++     ... ......+......+.++|.  
T Consensus        80 g~~vv--~~~~---------~~~~~~~~~~-~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~--  145 (180)
T 3iij_A           80 GGVIV--DYHG---------CDFFPERWFH-IVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK--  145 (180)
T ss_dssp             CCEEE--ECSC---------CTTSCGGGCS-EEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC--
T ss_pred             CCEEE--Eech---------hhhcchhcCC-EEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence            23221  1111         001111  12 3489999999999998654     111 1111223334444555565  


Q ss_pred             CCceEEEccCCCCCCHHHH---HHHHHHHHHh
Q 023675          245 NCEIVLKQMGDDCPSPADM---VETVVSYLDE  273 (279)
Q Consensus       245 ~a~~~i~~~~~~~~~~~e~---~~~Il~~l~~  273 (279)
                       +++++++   +..+++++   +++|+.++++
T Consensus       146 -~~~~i~~---~~~~~~ev~~~v~~i~~~l~~  173 (180)
T 3iij_A          146 -EEIVHQL---PSNKPEELENNVDQILKWIEQ  173 (180)
T ss_dssp             -GGGEEEE---ECSSHHHHHHHHHHHHHHHHH
T ss_pred             -CCeEEEc---CCCCHHHHHHHHHHHHHHHHH
Confidence             4688988   77899888   8888887765

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.89  E-value=5.3e-11  Score=110.60  Aligned_cols=121  Identities=14%  Similarity=0.032  Sum_probs=73.4

Q ss_pred             CCcceeccCCe--------------------EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-cc-c----
Q 023675           93 DRQQLLQQKGC--------------------VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GL-N----  146 (279)
Q Consensus        93 ~~~sl~i~~g~--------------------~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-~~-~----  146 (279)
                      +..++.+++|+                    +++|+|+||||||||+|+|.|++ .|.+|.|.++|.++.. .. .    
T Consensus        40 ~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~-~p~~GsI~~~g~~~t~~~~v~q~~~  118 (413)
T 1tq4_A           40 NLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG-NEEEGAAKTGVVEVTMERHPYKHPN  118 (413)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC-TTSTTSCCCCC----CCCEEEECSS
T ss_pred             hhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC-CccCceEEECCeecceeEEeccccc
Confidence            34588888888                    99999999999999999999999 8899999988865421 00 0    


Q ss_pred             -------cCCCCCcccHHHHHHHHHHHHHHH--HhCCcchhcccCChH--HHHH-HHHHHhCC----------CCCccEE
Q 023675          147 -------RDLSFKAEDRVENIRRIGEVAKLF--ADAGVICIACLISPY--RKDR-DACRSMLP----------EGDFIEV  204 (279)
Q Consensus       147 -------~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~i~~~~~~~--~~~r-~~ar~l~~----------~~~~i~i  204 (279)
                             ...++....  .   .+.+....+  .+......   .+++  +++| .++++++.          ++++  +
T Consensus       119 ~~~ltv~D~~g~~~~~--~---~~~~~L~~~~L~~~~~~~~---lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdl--l  188 (413)
T 1tq4_A          119 IPNVVFWDLPGIGSTN--F---PPDTYLEKMKFYEYDFFII---ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS--D  188 (413)
T ss_dssp             CTTEEEEECCCGGGSS--C---CHHHHHHHTTGGGCSEEEE---EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHH--H
T ss_pred             cCCeeehHhhcccchH--H---HHHHHHHHcCCCccCCeEE---eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcc--c
Confidence                   011111100  0   011111111  11111111   3333  4454 88888877          5555  6


Q ss_pred             EEeCCccchhccChhhHHHH
Q 023675          205 FMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       205 ~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ++|||+..++......+.+.
T Consensus       189 lLDEPtsgLD~~~~~~l~~~  208 (413)
T 1tq4_A          189 ITNEADGEPQTFDKEKVLQD  208 (413)
T ss_dssp             HHHHHTTCCTTCCHHHHHHH
T ss_pred             ccCcccccCCHHHHHHHHHH
Confidence            88999999988877665443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.89  E-value=1.4e-09  Score=93.56  Aligned_cols=36  Identities=31%  Similarity=0.409  Sum_probs=29.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+.+++|+|++||||||+++.|++.++.     .++|.+.+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~-----~~~d~g~~   43 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGA-----RYLDTGAM   43 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTC-----EEEEHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC-----CcccCCcH
Confidence            4568999999999999999999988743     36777665

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.88  E-value=1.8e-09  Score=92.19  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=22.7

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHH-Hcc
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALS-QAL  126 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~-~~l  126 (279)
                      ...||++++|++++|+||||||||||+++|+ +++
T Consensus        18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4559999999999999999999999999999 987

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.87  E-value=1.2e-09  Score=90.15  Aligned_cols=113  Identities=14%  Similarity=0.139  Sum_probs=65.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----ccccCCCCCcccHHHHHHHHHHHHHH-HHh-CCcch
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVENIRRIGEVAKL-FAD-AGVIC  177 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~~~~~  177 (279)
                      .++|+|+||||||||+++|++.+.      +.++|.+...    .....+++..+... ....+  .... +.. .-...
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~~-~~~~~--~~~~~~~~~~~~~~   72 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITTE-GKKKI--FSSKFFTSKKLVGS   72 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEETT-CCEEE--EEETTCCCSSEETT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecCc-HHHHH--HHhhcCCccccccc
Confidence            589999999999999999999983      2344433211    11112233222210 00000  0000 000 00111


Q ss_pred             hcccCChHHHHH-HHHHH-----hCCCCCccEEEEeC--CccchhccChhhHHHHHhC
Q 023675          178 IACLISPYRKDR-DACRS-----MLPEGDFIEVFMDV--PLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       178 i~~~~~~~~~~r-~~ar~-----l~~~~~~i~i~ld~--p~~~l~~R~~~~l~~~~~~  227 (279)
                      .+..+++++++| .++++     ++.+|++  +++||  |++.++....+.+.+.+..
T Consensus        73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~l--lilDEigp~~~ld~~~~~~l~~~l~~  128 (178)
T 1ye8_A           73 YGVNVQYFEELAIPILERAYREAKKDRRKV--IIIDEIGKMELFSKKFRDLVRQIMHD  128 (178)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHCTTCE--EEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred             cccCcCHHHHHHHHHHhhccccccccCCCE--EEEeCCCCcccCCHHHHHHHHHHHhc
Confidence            233467788887 78886     7888888  99999  9999987776666665554

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.86  E-value=8.3e-10  Score=88.98  Aligned_cols=155  Identities=15%  Similarity=0.164  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC-eecccccccCCCCCcccHHHHHHH---------HHH-HHHHH-
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGLNRDLSFKAEDRVENIRR---------IGE-VAKLF-  170 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg-d~i~~~~~~~~~~~~~~~~~~~~~---------v~~-~~~~~-  170 (279)
                      .+|+|+|++||||||+++.| ..++.+     +++. +.++...... +............         +.. ....+ 
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~-----~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   74 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAK-----VIVMSDVVRKRYSIE-AKPGERLMDFAKRLREIYGDGVVARLCVEELG   74 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCE-----EEEHHHHHHHHHHHH-C---CCHHHHHHHHHHHHCTTHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCc-----EEEHhHHHHHHHHhc-CCChhHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence            37899999999999999999 655322     5553 3333211100 0111111111111         111 11111 


Q ss_pred             HhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccc--------cCcCCC
Q 023675          171 ADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGI--------DDPYEP  242 (279)
Q Consensus       171 ~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~--------r~~~~~  242 (279)
                      ...+...+.++. ....+++..+..... .+..|++++|.+.+.+|+..+-.. ........+...        ...+..
T Consensus        75 ~~~~~~vi~dg~-~~~~~~~~l~~~~~~-~~~~i~l~~~~~~~~~R~~~R~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~  151 (179)
T 3lw7_A           75 TSNHDLVVFDGV-RSLAEVEEFKRLLGD-SVYIVAVHSPPKIRYKRMIERLRS-DDSKEISELIRRDREELKLGIGEVIA  151 (179)
T ss_dssp             SCCCSCEEEECC-CCHHHHHHHHHHHCS-CEEEEEEECCHHHHHHHHHTCC-----CCCHHHHHHHHHHHHHHTHHHHHH
T ss_pred             hcCCCeEEEeCC-CCHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHhccCC-CCcchHHHHHHHHHhhhccChHhHHH
Confidence            022333344443 344555556665554 355699999999999987543100 000000000000        111222


Q ss_pred             CCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          243 PLNCEIVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       243 ~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                        .++++|++   +. +++++.++|.+.+..
T Consensus       152 --~ad~vId~---~~-~~~~~~~~i~~~l~~  176 (179)
T 3lw7_A          152 --MADYIITN---DS-NYEEFKRRCEEVTDR  176 (179)
T ss_dssp             --TCSEEEEC---CS-CHHHHHHHHHHHHHH
T ss_pred             --hCCEEEEC---CC-CHHHHHHHHHHHHHH
Confidence              37788887   54 899999999888765

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.86  E-value=4e-09  Score=96.27  Aligned_cols=47  Identities=28%  Similarity=0.308  Sum_probs=43.0

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      .+|.+++|++++|+|+|||||||+++.|++++ .+.+|.|.+++.++.
T Consensus       150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g~D~~  196 (359)
T 2og2_A          150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDTF  196 (359)
T ss_dssp             CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCCS
T ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHhhc-cccCCEEEEeccccc
Confidence            47788999999999999999999999999999 678999999998763

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.85  E-value=6e-09  Score=87.52  Aligned_cols=153  Identities=15%  Similarity=0.110  Sum_probs=83.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHH---H----HH--------------
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV---E----NI--------------  160 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~---~----~~--------------  160 (279)
                      ..+|+|.|++||||||+++.|+..|+.+     ++|++-++.. ....+++.+...   +    ++              
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~-----~~D~~~~~~~-a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~   79 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIP-----LYSKELLDEV-AKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLE   79 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCC-----EECHHHHHHT-TCC---------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcC-----EECHHHHHHH-HHhcCCCHHHHHHHhhhchhHHHHHhcccccccccc
Confidence            3589999999999999999999999766     8896543211 000111111000   0    00              


Q ss_pred             ----HHHHHHHHHHH--hCCcchhcccCChHHHHHHHHHHhCCC-CCccEEEEeCCccchhccChhh-----------HH
Q 023675          161 ----RRIGEVAKLFA--DAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKG-----------LY  222 (279)
Q Consensus       161 ----~~v~~~~~~~~--~~~~~~i~~~~~~~~~~r~~ar~l~~~-~~~i~i~ld~p~~~l~~R~~~~-----------l~  222 (279)
                          ....++...+.  ..+..++.+. .++        .++.+ +..+.|||++|++.+.+|..++           +.
T Consensus        80 ~~~~~~~~~~i~~la~~~~~~~Vi~Gr-~g~--------~vl~~~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~  150 (201)
T 3fdi_A           80 QDIAIRQFNFIRKKANEEKESFVIVGR-CAE--------EILSDNPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMK  150 (201)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCEEEEST-THH--------HHTTTCTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCEEEEEC-Ccc--------hhcCCCCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence                11122222233  2232222211 121        12222 2456799999999999997542           11


Q ss_pred             HHH--hCCCCCCCccccCcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhC
Q 023675          223 KLA--REGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDEN  274 (279)
Q Consensus       223 ~~~--~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~  274 (279)
                      +..  +...+..+++ +.+.+ +..++++|++   +..+++++++.|+.+++.+
T Consensus       151 ~~d~~R~~~y~~~~~-~~~~~-~~~~dl~Idt---~~l~~eevv~~I~~~i~~~  199 (201)
T 3fdi_A          151 KMDKMRKVYHNFYCE-SKWGD-SRTYDICIKI---GKVDVDTATDMIIKYIDSR  199 (201)
T ss_dssp             HHHHHHHHHHHHHCS-SCTTB-GGGCSEEEEE---SSSCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhC-CCCCC-cccCCEEEEC---CCCCHHHHHHHHHHHHHHh
Confidence            100  0011111122 23333 2347899999   8899999999999998764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.84  E-value=1.7e-09  Score=87.94  Aligned_cols=113  Identities=20%  Similarity=0.130  Sum_probs=64.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHH-ccccCCccEEEEcCeecccccccC-C----CCCcccHHHHHHHHHHHHHHHH---h
Q 023675          102 GCVIWITGLSGSGKSTLACALSQ-ALHWRGKLTYILDGDNCRHGLNRD-L----SFKAEDRVENIRRIGEVAKLFA---D  172 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~-~l~~~~~G~i~ldgd~i~~~~~~~-~----~~~~~~~~~~~~~v~~~~~~~~---~  172 (279)
                      +.+|+|+|++||||||+++.|+. .+     |..+++.|.++..+... .    .+...........+......+.   .
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~-----~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   76 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNP-----GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGD   76 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHST-----TEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcC-----CcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhcc
Confidence            36899999999999999999998 33     45688887775433221 1    1322221111122222222222   3


Q ss_pred             CCcchhcccCChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChh
Q 023675          173 AGVICIACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPK  219 (279)
Q Consensus       173 ~~~~~i~~~~~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~  219 (279)
                      .+..++++.......+++..+.++.  ..++..+++++|.+.+.+|+.+
T Consensus        77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~  125 (181)
T 1ly1_A           77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSK  125 (181)
T ss_dssp             SCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTT
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhc
Confidence            4555555543333344444443332  1234458999999999988754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.84  E-value=8.3e-11  Score=96.73  Aligned_cols=153  Identities=20%  Similarity=0.213  Sum_probs=80.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHH-HH-HHHHHHhCCc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GE-VAKLFADAGV  175 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v-~~-~~~~~~~~~~  175 (279)
                      .+|+|+|++||||||+++.|+..++.+     ++|.|++.....   +....+.     ...+... .. +..+......
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   74 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQRT---GRSIADIFATDGEQEFRRIEEDVVRAALADHDG   74 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHH---SSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHHc---CCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCe
Confidence            469999999999999999999988554     889888643221   1111100     0111111 11 1112222221


Q ss_pred             -chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHH-HhCC----CCCCCccccCcCCCCCCCceE
Q 023675          176 -ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL-AREG----KVKGFTGIDDPYEPPLNCEIV  249 (279)
Q Consensus       176 -~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~-~~~~----~~~~~~~~r~~~~~~~~a~~~  249 (279)
                       +..+.........++.++    . . ..|++++|.+.+.+|+.++-... ....    .+..+...+.++|.. .++++
T Consensus        75 vi~~g~~~v~~~~~~~~l~----~-~-~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~-~~~~~  147 (184)
T 2iyv_A           75 VLSLGGGAVTSPGVRAALA----G-H-TVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRR-VATMR  147 (184)
T ss_dssp             EEECCTTGGGSHHHHHHHT----T-S-CEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHH-HCSEE
T ss_pred             EEecCCcEEcCHHHHHHHc----C-C-eEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhc-cCCEE
Confidence             111111111123343322    2 2 34999999999999975320000 0000    011111122344422 26789


Q ss_pred             EEccCCCCCCHHHHHHHHHHHHHh
Q 023675          250 LKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       250 i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      |++   +..++++++++|++.+..
T Consensus       148 Idt---~~~s~ee~~~~I~~~l~~  168 (184)
T 2iyv_A          148 VDT---NRRNPGAVVRHILSRLQV  168 (184)
T ss_dssp             EEC---SSSCHHHHHHHHHTTSCC
T ss_pred             EEC---CCCCHHHHHHHHHHHHhh
Confidence            998   668999999999887653

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.84  E-value=5.5e-10  Score=95.51  Aligned_cols=163  Identities=14%  Similarity=0.130  Sum_probs=87.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----ccccC-CC-CCcc-------------------
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRD-LS-FKAE-------------------  154 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-----~~~~~-~~-~~~~-------------------  154 (279)
                      +..+|+|.|++||||||+++.|+..|..+     ++|++.++.     ++... +. +...                   
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~-----~~d~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~   87 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGIH-----FYDDDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHS   87 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTCE-----EECHHHHHHHHHCC--------------------------------
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCCc-----EEcHHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccc
Confidence            35689999999999999999999998654     889765532     11100 00 0000                   


Q ss_pred             ------c---HHHHHHHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCC-CCccEEEEeCCccchhccChhhH--H
Q 023675          155 ------D---RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKGL--Y  222 (279)
Q Consensus       155 ------~---~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~-~~~i~i~ld~p~~~l~~R~~~~l--~  222 (279)
                            +   ....+....++...+...+..++.+. .++-    ..+ .+.+ +..+.|||++|.+.+.+|..++-  -
T Consensus        88 ~~~~~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Gr-ggg~----vl~-~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~~  161 (223)
T 3hdt_A           88 KPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVGR-AAGY----VLD-QDEDIERLIRIFVYTDKVKKVQRVMEVDCID  161 (223)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHSCEEEEST-THHH----HHH-HCTTCCEEEEEEEECCHHHHHHHHHHHHTCC
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHhCCCEEEEeC-Ccch----hcc-cccCCCCeEEEEEECCHHHHHHHHHHhcCCC
Confidence                  0   00001111111111222222222212 2211    111 1122 34577999999999999975420  0


Q ss_pred             HHHhCCCCCCCccccCcCC---------CCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCc
Q 023675          223 KLAREGKVKGFTGIDDPYE---------PPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFL  277 (279)
Q Consensus       223 ~~~~~~~~~~~~~~r~~~~---------~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~  277 (279)
                      .......+......|.+||         .+..++++|++   +..+++++++.|+.+++.++++
T Consensus       162 ~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT---~~l~~eevv~~I~~~i~~~~~~  222 (223)
T 3hdt_A          162 EERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINT---TKLTLEETAELIKAYIRLKGFM  222 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEEC---TTCCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEEC---CCCCHHHHHHHHHHHHHHhCCC
Confidence            0000001111112233333         34457899999   8899999999999999988764

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.83  E-value=1.6e-08  Score=102.18  Aligned_cols=44  Identities=16%  Similarity=0.171  Sum_probs=36.0

Q ss_pred             cccCChHHHHH-HHHHHhCCCC---CccEEEEeCCccchhccChhhHHHH
Q 023675          179 ACLISPYRKDR-DACRSMLPEG---DFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       179 ~~~~~~~~~~r-~~ar~l~~~~---~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +..+|++++|| .+|++++.++   .+  ++||||+..|+....+.+++.
T Consensus       803 ~~~LSGGErQRV~LAraL~~~p~~p~L--LILDEPTsGLD~~~~~~L~~l  850 (916)
T 3pih_A          803 ATTLSGGEAQRIKLASELRKRDTGRTL--YILDEPTVGLHFEDVRKLVEV  850 (916)
T ss_dssp             STTCCHHHHHHHHHHHHHTSCCCSSEE--EEEESTTTTCCHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHhhCCCCCCE--EEEECCCCCCCHHHHHHHHHH
Confidence            45689999999 9999999865   46  899999999998877765543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.81  E-value=9e-11  Score=105.34  Aligned_cols=129  Identities=16%  Similarity=0.049  Sum_probs=75.7

Q ss_pred             CCCCeEEeecceeecC---Cccee-----------------------ccCCeEEEEEcCCCChHHHHHHHHHHccccCCc
Q 023675           78 KSTNILWHKNSVDKRD---RQQLL-----------------------QQKGCVIWITGLSGSGKSTLACALSQALHWRGK  131 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~---~~sl~-----------------------i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~  131 (279)
                      ..+.|+++++++.|..   ..++.                       +++|++++|+|+||||||||+++|++++ .|..
T Consensus        40 ~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll-~~~~  118 (312)
T 3aez_A           40 LGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL-ARWD  118 (312)
T ss_dssp             TTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH-HTST
T ss_pred             CCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc-cccC
Confidence            3456888888888842   11332                       7899999999999999999999999999 5543


Q ss_pred             c---EEEEcCeecc-c-ccccC------CCCCcccHHHHHHHHHHHHHHHHhCCcc-hhcccCChHHHHH-HHHHHhCCC
Q 023675          132 L---TYILDGDNCR-H-GLNRD------LSFKAEDRVENIRRIGEVAKLFADAGVI-CIACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       132 G---~i~ldgd~i~-~-~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      |   ..++.-+... . .....      .+.......   ..+.+....+. .+.. ......++++++| .++++++.+
T Consensus       119 G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~---~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~  194 (312)
T 3aez_A          119 HHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNR---RALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRH  194 (312)
T ss_dssp             TCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCH---HHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECS
T ss_pred             CCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHH---HHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccC
Confidence            3   2233322221 0 00000      111111111   11222222233 2322 2334566667776 567788888


Q ss_pred             CCccEEEEeCCccch
Q 023675          199 GDFIEVFMDVPLQVC  213 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l  213 (279)
                      +++  +++|+|...+
T Consensus       195 p~i--lIlDep~~~~  207 (312)
T 3aez_A          195 PDI--LILEGLNVLQ  207 (312)
T ss_dssp             CSE--EEEECTTTTC
T ss_pred             CCE--EEECCccccC
Confidence            887  8999997764

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.81  E-value=2e-08  Score=90.18  Aligned_cols=43  Identities=21%  Similarity=0.150  Sum_probs=34.1

Q ss_pred             eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ++++|. .+|.+..++.+.+| +.+|+|+||||||||+.+|.-.+
T Consensus         6 L~i~nf-r~~~~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A            6 LYLKGF-KSFGRPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             EEEESB-TTBCSCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             EEEeCc-eeecCCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence            556663 24555667888888 99999999999999999999544

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.80  E-value=1.5e-09  Score=89.56  Aligned_cols=160  Identities=13%  Similarity=0.096  Sum_probs=80.6

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccC------------CC-CCcccHHHHHHHHH
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRD------------LS-FKAEDRVENIRRIG  164 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~------------~~-~~~~~~~~~~~~v~  164 (279)
                      ..++.+|+|+|++||||||+++.|+..++.     .+++.+++... ....            .+ ..+.  ......+.
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~-----~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~--~~~~~~~~   78 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGY-----THLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPL--ETVLDMLR   78 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCH--HHHHHHHH
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHhCC-----eEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCH--HHHHHHHH
Confidence            346789999999999999999999998743     36776554211 0000            00 0000  01111111


Q ss_pred             HHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCC-----------CCC
Q 023675          165 EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV-----------KGF  233 (279)
Q Consensus       165 ~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~-----------~~~  233 (279)
                      +........+..++.+.......+++.....+..+.+ .++|++|.+.+.+|+.++-.   ..++.           ..+
T Consensus        79 ~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~-vi~l~~~~e~~~~R~~~R~~---~~~~~~~~~~~~~~r~~~~  154 (196)
T 2c95_A           79 DAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTL-LLYVDAGPETMTQRLLKRGE---TSGRVDDNEETIKKRLETY  154 (196)
T ss_dssp             HHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSE-EEEEECCHHHHHHHHHHHHT---SSSCGGGSHHHHHHHHHHH
T ss_pred             HHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHccCC---cCCCCCCCHHHHHHHHHHH
Confidence            1111111223333443322222334434444455553 48999999999998753310   00110           111


Q ss_pred             ccccCcC---CCCCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          234 TGIDDPY---EPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       234 ~~~r~~~---~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      ...+.++   |......++|++    +.++++++++|.+.+..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~Id~----~~~~e~v~~~i~~~l~~  193 (196)
T 2c95_A          155 YKATEPVIAFYEKRGIVRKVNA----EGSVDSVFSQVCTHLDA  193 (196)
T ss_dssp             HHHTHHHHHHHHHHTCEEEEEC----CSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcEEEEEC----CCCHHHHHHHHHHHHHH
Confidence            1112221   221111134554    47899999999988865

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.79  E-value=9.3e-10  Score=100.66  Aligned_cols=56  Identities=23%  Similarity=0.156  Sum_probs=49.4

Q ss_pred             EEeeccee---ec----------------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675           83 LWHKNSVD---KR----------------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (279)
Q Consensus        83 ~~~~~~~~---~~----------------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd  139 (279)
                      +|++++|+   |+                +..++.+++|++++|+|+||||||||+++|++++ .|.+|.|.+++.
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~~~~g~I~ie~~  211 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-PFDQRLITIEDV  211 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-CTTSCEEEEESS
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-CCCceEEEECCc
Confidence            67777777   64                3348899999999999999999999999999999 789999999974

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.78  E-value=1.6e-09  Score=87.44  Aligned_cols=154  Identities=19%  Similarity=0.266  Sum_probs=81.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCccc-----HHHHHHHH-HHHHHHHHhCCcch
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED-----RVENIRRI-GEVAKLFADAGVIC  177 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~-----~~~~~~~v-~~~~~~~~~~~~~~  177 (279)
                      .|+|+|++||||||+++.|+..+..+     ++|.|++.....   +....+     ....+..+ ..+...+...+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~V   73 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKRE---GLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVV   73 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHH---TSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHc---CCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeE
Confidence            68999999999999999999987544     778776632211   111000     00111111 11111222222222


Q ss_pred             hcccC--ChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHH-HHh--CCCCCCCccccCcCCCCCCCceEEEc
Q 023675          178 IACLI--SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK-LAR--EGKVKGFTGIDDPYEPPLNCEIVLKQ  252 (279)
Q Consensus       178 i~~~~--~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~-~~~--~~~~~~~~~~r~~~~~~~~a~~~i~~  252 (279)
                      +....  ......++.++    .+. ..|++++|.+.+.+|+.++-.. ...  ...+...+..+.++|..  ++++| +
T Consensus        74 i~~g~~~~~~~~~~~~l~----~~~-~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~~~~--~~~~i-~  145 (168)
T 2pt5_A           74 ISTGGGLGANEEALNFMK----SRG-TTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEERRKIYSK--ADIKV-K  145 (168)
T ss_dssp             EECCHHHHTCHHHHHHHH----TTS-EEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHHHTT--SSEEE-E
T ss_pred             EECCCCEeCCHHHHHHHH----cCC-EEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHh--CCEEE-C
Confidence            22110  01122333332    223 3489999999999998542000 000  00011111112233332  67888 7


Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCC
Q 023675          253 MGDDCPSPADMVETVVSYLDENGF  276 (279)
Q Consensus       253 ~~~~~~~~~e~~~~Il~~l~~~~~  276 (279)
                         +..++++++++|.+.+.+.++
T Consensus       146 ---~~~~~~~~~~~i~~~l~~~~~  166 (168)
T 2pt5_A          146 ---GEKPPEEVVKEILLSLEGNAL  166 (168)
T ss_dssp             ---CSSCHHHHHHHHHHHHHTSCC
T ss_pred             ---CCCCHHHHHHHHHHHHHhccC
Confidence               778999999999999988664

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.77  E-value=7e-10  Score=99.09  Aligned_cols=120  Identities=10%  Similarity=0.010  Sum_probs=75.2

Q ss_pred             CeEEeecceeec----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc----ccccc-CCCC
Q 023675           81 NILWHKNSVDKR----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----HGLNR-DLSF  151 (279)
Q Consensus        81 ~i~~~~~~~~~~----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~----~~~~~-~~~~  151 (279)
                      .|++++++|+|.    .+.+|.+++|++++|+||||||||||+++|+|++    +|.|...+....    ..+.. .+.+
T Consensus       101 ~i~~~~vs~~y~~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v~q~~~lf~~ti~~~ni~~  176 (305)
T 2v9p_A          101 FFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFANHKSHFWLASLADTRAAL  176 (305)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGGGTTSGGGGGGGTTCSCEE
T ss_pred             eEEEEEEEEEcChhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEecCccccccccHHHHhhcc
Confidence            478889998885    3349999999999999999999999999999998    688865442211    01111 2222


Q ss_pred             CcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675          152 KAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       152 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~  218 (279)
                      .+.....    +.+....+...++.  +..+|+++++|  +|+++.+|++  ++    ++.++....
T Consensus       177 ~~~~~~~----~~~~i~~~L~~gld--g~~LSgGqkQR--ARAll~~p~i--Ll----Ts~LD~~~~  229 (305)
T 2v9p_A          177 VDDATHA----CWRYFDTYLRNALD--GYPVSIDRKHK--AAVQIKAPPL--LV----TSNIDVQAE  229 (305)
T ss_dssp             EEEECHH----HHHHHHHTTTGGGG--TCCEECCCSSC--CCCEECCCCE--EE----EESSCSTTC
T ss_pred             CccccHH----HHHHHHHHhHccCC--ccCcCHHHHHH--HHHHhCCCCE--EE----ECCCCHHHH
Confidence            2111111    11111110111222  55678888888  9999999887  33    555555443

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.77  E-value=4.6e-08  Score=82.22  Aligned_cols=27  Identities=33%  Similarity=0.498  Sum_probs=25.9

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ++|++++|+||||||||||++.|++.+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            579999999999999999999999998

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.76  E-value=1.1e-08  Score=83.92  Aligned_cols=37  Identities=14%  Similarity=0.057  Sum_probs=28.9

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l  136 (279)
                      .+|++++|+||||||||||+++|.+.+.....|.+..
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~   39 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH   39 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence            3689999999999999999999999873223344433

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.76  E-value=5.9e-09  Score=88.07  Aligned_cols=43  Identities=23%  Similarity=0.256  Sum_probs=35.5

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHcccc-C-----CccEEEEcCee
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHW-R-----GKLTYILDGDN  140 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~-----~~G~i~ldgd~  140 (279)
                      -+++|++++|+||||||||||++.|++.+.. +     +.+.+++++.+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            5789999999999999999999999996622 2     45588888765

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.76  E-value=3.4e-09  Score=87.07  Aligned_cols=36  Identities=28%  Similarity=0.512  Sum_probs=29.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+.+|+|+|++||||||+++.|+..++.     .+++.+++
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~-----~~i~~d~~   40 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGW-----VHLSAGDL   40 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCC-----EEEEHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCC-----eEeeHHHH
Confidence            4578999999999999999999998743     36776554

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.75  E-value=4e-10  Score=106.18  Aligned_cols=139  Identities=10%  Similarity=0.013  Sum_probs=87.7

Q ss_pred             CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCcc-E-EEEcCeecccccccCCCCCcccH-
Q 023675           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-T-YILDGDNCRHGLNRDLSFKAEDR-  156 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G-~-i~ldgd~i~~~~~~~~~~~~~~~-  156 (279)
                      ..++++|+++.|. +.+|.+++|++++|+|+||||||||+++|++++ .|.+| . |++||+. +..+    ++.++.. 
T Consensus       117 ~mi~~~nl~~~y~-~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~-~p~~G~~pI~vdg~~-~~~i----~~vpq~~~  189 (460)
T 2npi_A          117 TMKYIYNLHFMLE-KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA-LKFNAYQPLYINLDP-QQPI----FTVPGCIS  189 (460)
T ss_dssp             THHHHHHHHHHHH-HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT-HHHHCCCCEEEECCT-TSCS----SSCSSCCE
T ss_pred             chhhhhhhhehhh-cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc-cccCCceeEEEcCCc-cCCe----eeeccchh
Confidence            3477888888886 579999999999999999999999999999999 78899 8 9999853 2211    1111100 


Q ss_pred             ----------HHHH-H--------HHHHHHHHHHhCCcchh--cccCChHHHHH-HHHHH--hCCCCCc--cEEEEeC-C
Q 023675          157 ----------VENI-R--------RIGEVAKLFADAGVICI--ACLISPYRKDR-DACRS--MLPEGDF--IEVFMDV-P  209 (279)
Q Consensus       157 ----------~~~~-~--------~v~~~~~~~~~~~~~~i--~~~~~~~~~~r-~~ar~--l~~~~~~--i~i~ld~-p  209 (279)
                                .+.+ .        .......++...++...  ...+++++++| .++++  ++.+|++  --+++|| |
T Consensus       190 l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP  269 (460)
T 2npi_A          190 ATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS  269 (460)
T ss_dssp             EEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred             hcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence                      0000 0        00000000011111111  33467788888 88888  8887632  0168999 9


Q ss_pred             ccchhccChhhHHHHHh
Q 023675          210 LQVCEARDPKGLYKLAR  226 (279)
Q Consensus       210 ~~~l~~R~~~~l~~~~~  226 (279)
                      +..++.. .+.+.+..+
T Consensus       270 ts~LD~~-~~~l~~l~~  285 (460)
T 2npi_A          270 ISQLDEN-LAELHHIIE  285 (460)
T ss_dssp             GGGSCSS-CHHHHHHHH
T ss_pred             ccccChh-HHHHHHHHH
Confidence            9999887 333444333

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.74  E-value=4.3e-09  Score=89.54  Aligned_cols=169  Identities=17%  Similarity=0.101  Sum_probs=85.5

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC-eecccccccCC-------------CCCcccHHHHHH
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGLNRDL-------------SFKAEDRVENIR  161 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg-d~i~~~~~~~~-------------~~~~~~~~~~~~  161 (279)
                      +-..+++.+|+|+||+||||+|.++.|+..|+.     .+|.. |-+|..+...-             .+.+.+.  ...
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~-----~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~--~~~   95 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHF-----NHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEV--VLA   95 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCC-----EEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHH--HHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHHHHCC-----ceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHH--HHH
Confidence            346678899999999999999999999999853     36664 33443221100             0111110  011


Q ss_pred             HHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC--------CCCCCC
Q 023675          162 RIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE--------GKVKGF  233 (279)
Q Consensus       162 ~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~--------~~~~~~  233 (279)
                      .+.+......+.....+.++..-...|.+.+......+.+ .++|++|.+.+.+|+..+-....+.        .++..+
T Consensus        96 lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~-vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y  174 (217)
T 3umf_A           96 LLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLC-VINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTF  174 (217)
T ss_dssp             HHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSE-EEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccCE-EEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHH
Confidence            1111111111112222333332222333334444445444 4899999999999875431100000        011111


Q ss_pred             cccc---CcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCC
Q 023675          234 TGID---DPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGF  276 (279)
Q Consensus       234 ~~~r---~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~  276 (279)
                      ....   ..||....--..||    ...+++++.++|.+.|++.|+
T Consensus       175 ~~~t~pl~~~Y~~~~~l~~Id----g~~~~eeV~~~I~~~l~k~G~  216 (217)
T 3umf_A          175 NELTKPVIEHYKQQNKVITID----ASGTVDAIFDKVNHELQKFGV  216 (217)
T ss_dssp             HHHTHHHHHHHHTTTCEEEEE----TTSCHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhcCCEEEEE----CCCCHHHHHHHHHHHHHHcCC
Confidence            1111   12343321113344    467999999999999998774

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.74  E-value=2.8e-09  Score=100.71  Aligned_cols=52  Identities=17%  Similarity=0.079  Sum_probs=46.5

Q ss_pred             eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      +...++.+|++++ ++++|+||||||||||+++|++++ .|++|.|.++|.++.
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL-IPDLTLLNFRNTTEA   68 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHH-CCCTTTCCCCCTTSC
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC-CCCCCEEEECCEEcc
Confidence            3445577999999 999999999999999999999999 899999999998763

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.74  E-value=6.1e-10  Score=90.28  Aligned_cols=152  Identities=16%  Similarity=0.165  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCccc-----HHHHHHHHH-HHHHHHHhCCcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED-----RVENIRRIG-EVAKLFADAGVI  176 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~-----~~~~~~~v~-~~~~~~~~~~~~  176 (279)
                      .+|+|+|++||||||+++.|+..+..     .++|.|.+.....   +....+     ....+..+. .+...+. .+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~-----~~id~d~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~   73 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGY-----EFVDTDIFMQHTS---GMTVADVVAAEGWPGFRRRESEALQAVA-TPNR   73 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTC-----EEEEHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC-----cEEcccHHHHHHh---CCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCe
Confidence            46899999999999999999998743     3788776632221   111111     011111111 1111111 1111


Q ss_pred             hhccc--CChHHHHHHHHHHhCCCCCccEEEEeCCccchhccCh--hhH-----HH-HHhCCCCCCCccccCcCCCCCCC
Q 023675          177 CIACL--ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP--KGL-----YK-LAREGKVKGFTGIDDPYEPPLNC  246 (279)
Q Consensus       177 ~i~~~--~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~--~~l-----~~-~~~~~~~~~~~~~r~~~~~~~~a  246 (279)
                      ++...  .......++.++.    +. ..|++++|.+.+.+|+.  ++.     .. ......+......+.++|..  +
T Consensus        74 vi~~g~~~~~~~~~~~~l~~----~~-~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~  146 (173)
T 1e6c_A           74 VVATGGGMVLLEQNRQFMRA----HG-TVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQD--V  146 (173)
T ss_dssp             EEECCTTGGGSHHHHHHHHH----HS-EEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred             EEECCCcEEeCHHHHHHHHc----CC-eEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHh--C
Confidence            12111  1112334443332    12 34899999999988874  220     00 00000011111112233332  5


Q ss_pred             ceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          247 EIVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       247 ~~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      +++|++   +..++++++++|...++.
T Consensus       147 ~~~Id~---~~~~~~~~~~~i~~~l~~  170 (173)
T 1e6c_A          147 AHYVVD---ATQPPAAIVCELMQTMRL  170 (173)
T ss_dssp             CSEEEE---TTSCHHHHHHHHHHHTTC
T ss_pred             cEEEEC---CCCCHHHHHHHHHHHhcc
Confidence            789998   768999999999987753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=98.74  E-value=5e-09  Score=86.17  Aligned_cols=36  Identities=22%  Similarity=0.372  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +|.+|+|+|++||||||+++.|+..++.     .+++.+++
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~-----~~i~~d~~   37 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGY-----THLSAGEL   37 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCC-----EEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCC-----eEEeHHHH
Confidence            4678999999999999999999998743     36776554

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.73  E-value=3.8e-10  Score=91.44  Aligned_cols=151  Identities=15%  Similarity=0.144  Sum_probs=75.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHH-HHHHHHHHhCCc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEVAKLFADAGV  175 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v-~~~~~~~~~~~~  175 (279)
                      -++++|+|++||||||+++.|+..+..+     ++|.|.+.....   +....+.     ...+..+ .+....+...+.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~-----~id~D~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~   78 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLE-----VLDTDMIISERV---GLSVREIFEELGEDNFRMFEKNLIDELKTLKT   78 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHH---TSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSS
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHh---CCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCC
Confidence            4689999999999999999999988655     788877632211   1111110     0111111 111111111111


Q ss_pred             chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHH-HH-HhC--CCCCCCccccCcCCCCCCCceEEE
Q 023675          176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY-KL-ARE--GKVKGFTGIDDPYEPPLNCEIVLK  251 (279)
Q Consensus       176 ~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~-~~-~~~--~~~~~~~~~r~~~~~~~~a~~~i~  251 (279)
                      ..++....+......     +..+. ..|++++|.+.+.+|+.++.. .+ ...  ..+......+.++|.. .++++|+
T Consensus        79 ~~Vi~~g~g~~~~~~-----l~~~~-~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~~~-~a~~~Id  151 (168)
T 1zuh_A           79 PHVISTGGGIVMHEN-----LKGLG-TTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEK-NASFIID  151 (168)
T ss_dssp             CCEEECCGGGGGCGG-----GTTSE-EEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHHHH-TCSEEEE
T ss_pred             CEEEECCCCEechhH-----HhcCC-EEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHHHH-HCCEEEE
Confidence            101111111000011     23333 348999999999998754310 00 000  0011111223344432 2679999


Q ss_pred             ccCCCCCCHHHHHHHHHHHH
Q 023675          252 QMGDDCPSPADMVETVVSYL  271 (279)
Q Consensus       252 ~~~~~~~~~~e~~~~Il~~l  271 (279)
                      +   +. ++++++++|.+.+
T Consensus       152 ~---~~-~~e~~~~~I~~~l  167 (168)
T 1zuh_A          152 A---RG-GLNNSLKQVLQFI  167 (168)
T ss_dssp             G---GG-CHHHHHHHHHHC-
T ss_pred             C---CC-CHHHHHHHHHHHh
Confidence            8   66 9999999988754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.70  E-value=1.1e-08  Score=87.02  Aligned_cols=58  Identities=19%  Similarity=0.156  Sum_probs=43.0

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccC--CccEEEEcCeecccccccCCCCCcccH
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRHGLNRDLSFKAEDR  156 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~--~~G~i~ldgd~i~~~~~~~~~~~~~~~  156 (279)
                      ..++|++++|+||||||||||+++|++.+ .|  ..|.|.+.+.+.+......++|.++..
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~-~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~   71 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ-PLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH   71 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHS-CTTTEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccC-CCCceEEEEEecCCCCCcccccCceEEECCH
Confidence            57899999999999999999999999998 53  578888888776543333455555543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.69  E-value=2.6e-08  Score=91.39  Aligned_cols=45  Identities=29%  Similarity=0.311  Sum_probs=38.9

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCC-ccEEEEcCeecc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCR  142 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-~G~i~ldgd~i~  142 (279)
                      +.+++|++++|+|+|||||||++++|++++ .+. +|.|.+.++++.
T Consensus       131 l~~~~g~~i~ivG~~GsGKTTll~~l~~~~-~~~~~g~I~~~e~~~e  176 (372)
T 2ewv_A          131 LCHRKMGLILVTGPTGSGKSTTIASMIDYI-NQTKSYHIITIEDPIE  176 (372)
T ss_dssp             HTTSSSEEEEEECSSSSSHHHHHHHHHHHH-HHHSCCEEEEEESSCC
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHHHhhc-CcCCCcEEEEecccHh
Confidence            347899999999999999999999999999 565 899987777653

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.68  E-value=2.2e-08  Score=93.23  Aligned_cols=104  Identities=13%  Similarity=0.031  Sum_probs=69.1

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV  175 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  175 (279)
                      .+.-+++.+|+|+|+|||||||+++.|+..+.     .++++.|+++.            ..    .+...+......+.
T Consensus       252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~~~------------~~----~~~~~~~~~l~~g~  310 (416)
T 3zvl_A          252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG-----YVHVNRDTLGS------------WQ----RCVSSCQAALRQGK  310 (416)
T ss_dssp             CSCCSSCCEEEEESCTTSSHHHHHHHHTGGGT-----CEECCGGGSCS------------HH----HHHHHHHHHHHTTC
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcC-----cEEEccchHHH------------HH----HHHHHHHHHHhcCC
Confidence            45566789999999999999999999998773     45888887741            11    11222222223455


Q ss_pred             chhcccCChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChhh
Q 023675          176 ICIACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       176 ~~i~~~~~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      .++++.......+|..++.++.  ...+..+++++|.+.+.+|+.++
T Consensus       311 ~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R  357 (416)
T 3zvl_A          311 RVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR  357 (416)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhh
Confidence            5666665555555544444432  22456689999999999998655

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.68  E-value=6.5e-08  Score=88.21  Aligned_cols=90  Identities=13%  Similarity=0.103  Sum_probs=56.6

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVI  176 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  176 (279)
                      +...+|.+++|+|||||||||++++|.+.++....|.|....+++.........+..+.                ..+  
T Consensus       118 l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~----------------~~~--  179 (356)
T 3jvv_A          118 VSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQR----------------EVH--  179 (356)
T ss_dssp             HHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEE----------------EBT--
T ss_pred             HHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeee----------------eec--
Confidence            35678889999999999999999999999943336777666665531111000000000                000  


Q ss_pred             hhcccCChHHHHHHHHHHhCCCCCccEEEEeCCcc
Q 023675          177 CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ  211 (279)
Q Consensus       177 ~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~  211 (279)
                        .....   -...+++++..+|++  +++|||.+
T Consensus       180 --~~~~~---~~~~La~aL~~~Pdv--illDEp~d  207 (356)
T 3jvv_A          180 --RDTLG---FSEALRSALREDPDI--ILVGEMRD  207 (356)
T ss_dssp             --TTBSC---HHHHHHHHTTSCCSE--EEESCCCS
T ss_pred             --cccCC---HHHHHHHHhhhCcCE--EecCCCCC
Confidence              00111   112677888899998  99999974

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.67  E-value=1.4e-08  Score=85.17  Aligned_cols=30  Identities=30%  Similarity=0.390  Sum_probs=25.7

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .++++|++++|+||||||||||+++|++++
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999999999998

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.65  E-value=4.5e-08  Score=81.42  Aligned_cols=38  Identities=24%  Similarity=0.305  Sum_probs=30.2

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      -.++.+|+|+|++||||||+++.|+..++     ..+++.+++
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g-----~~~i~~d~~   49 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS-----FVHLSAGDL   49 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSS-----CEEEEHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcC-----ceEEeHHHH
Confidence            34567899999999999999999998874     346776554

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.63  E-value=4.1e-09  Score=94.20  Aligned_cols=61  Identities=21%  Similarity=0.078  Sum_probs=49.9

Q ss_pred             CCeEEeecceeecC---Ccceec-------------------cCCeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEE
Q 023675           80 TNILWHKNSVDKRD---RQQLLQ-------------------QKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYI  135 (279)
Q Consensus        80 ~~i~~~~~~~~~~~---~~sl~i-------------------~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~  135 (279)
                      +.|++++++..|..   ..++.+                   .+|++++|+|+||||||||+++|++++ .  |.+|.|.
T Consensus        36 ~~i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l-~~~~~~G~i~  114 (308)
T 1sq5_A           36 EDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL-SRWPEHRRVE  114 (308)
T ss_dssp             TTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH-TTSTTCCCEE
T ss_pred             cccchHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH-hhCCCCCeEE
Confidence            45778888877742   236665                   899999999999999999999999998 5  8899998


Q ss_pred             E---cCeec
Q 023675          136 L---DGDNC  141 (279)
Q Consensus       136 l---dgd~i  141 (279)
                      +   ||...
T Consensus       115 vi~~d~~~~  123 (308)
T 1sq5_A          115 LITTDGFLH  123 (308)
T ss_dssp             EEEGGGGBC
T ss_pred             EEecCCccC
Confidence            8   77654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.62  E-value=1.8e-08  Score=95.11  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=42.5

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ...+|.+.+|++++|+|+||||||||++.|++++ .+.+|.|++++.+.
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g~D~  331 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAAGDT  331 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEECCCT
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHHHh-hhcCCeEEEecCcc
Confidence            3458899999999999999999999999999999 68889999976554

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.61  E-value=1.1e-08  Score=84.52  Aligned_cols=162  Identities=15%  Similarity=0.086  Sum_probs=81.0

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec-ccccc--------------cCCCCCcccHHHHHHHH
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC-RHGLN--------------RDLSFKAEDRVENIRRI  163 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i-~~~~~--------------~~~~~~~~~~~~~~~~v  163 (279)
                      .+++.+|+|+|++||||||+++.|+..++     ..+++.+++ +....              ..... +.  ......+
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~-~~--~~~~~~~   80 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG-----FTHLSTGELLREELASESERSKLIRDIMERGDLV-PS--GIVLELL   80 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHHT-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCC-CH--HHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHhC-----CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcC-CH--HHHHHHH
Confidence            44678999999999999999999999884     336776554 21110              00000 00  0111111


Q ss_pred             HHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhH-----HHHH---hCCCCCCCcc
Q 023675          164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL-----YKLA---REGKVKGFTG  235 (279)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l-----~~~~---~~~~~~~~~~  235 (279)
                      .+........+..++.+.......++..+...+..+++ .|++++|.+.+.+|+.++-     ....   -..++..+..
T Consensus        81 ~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~-~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~  159 (199)
T 2bwj_A           81 KEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQL-VICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYR  159 (199)
T ss_dssp             HHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSE-EEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            11111111123334444332223344334444434454 5899999999988874320     0000   0000000111


Q ss_pred             ccCc---CCCCCCCc-eEEEccCCCCCCHHHHHHHHHHHHHhC
Q 023675          236 IDDP---YEPPLNCE-IVLKQMGDDCPSPADMVETVVSYLDEN  274 (279)
Q Consensus       236 ~r~~---~~~~~~a~-~~i~~~~~~~~~~~e~~~~Il~~l~~~  274 (279)
                      ...+   +|... .. ++|+    +..++++++++|.+.+.+.
T Consensus       160 ~~~~~~~~~~~~-~~~~~id----~~~~~e~v~~~i~~~l~~~  197 (199)
T 2bwj_A          160 ASIPVIAYYETK-TQLHKIN----AEGTPEDVFLQLCTAIDSI  197 (199)
T ss_dssp             HHHHHHHHHHHH-SEEEEEE----TTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCEEEEE----CCCCHHHHHHHHHHHHHHh
Confidence            1111   22211 23 4455    3578999999999888754

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.61  E-value=2.5e-08  Score=93.38  Aligned_cols=59  Identities=17%  Similarity=0.055  Sum_probs=51.4

Q ss_pred             CCeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675           80 TNILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd  139 (279)
                      ..++++++++.|..+.     =|.+.+|++++|+|+||||||||+++|++++ .++.|.|.++|.
T Consensus       130 ~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~-~~~~G~i~~~G~  193 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT-RADVIVVGLIGE  193 (438)
T ss_dssp             CTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESC
T ss_pred             CceEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEece
Confidence            4577888888886321     2899999999999999999999999999999 899999999998

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.60  E-value=1.4e-07  Score=80.73  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l  136 (279)
                      .++|.+|+|.|++||||||+++.|++.+ .. .+.+..
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l-~~-~~~~~~   58 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRL-VK-DYDVIM   58 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHH-TT-TSCEEE
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHH-hc-CCCcee
Confidence            4589999999999999999999999999 44 444543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.60  E-value=1.4e-07  Score=78.71  Aligned_cols=31  Identities=39%  Similarity=0.415  Sum_probs=27.1

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccC
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWR  129 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~  129 (279)
                      .++|.+|+|+|++||||||+++.|+..+..+
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~   37 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNN   37 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            3568899999999999999999999987544

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.60  E-value=3.1e-08  Score=90.05  Aligned_cols=59  Identities=24%  Similarity=0.081  Sum_probs=49.0

Q ss_pred             CeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           81 NILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      .++.++++..|..+.     -|.+.+|++++|+|+||||||||+++|++.+ .++.|.+.+.|.+
T Consensus        45 ~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~-~~~~g~i~~~G~~  108 (347)
T 2obl_A           45 PLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA-SADIIVLALIGER  108 (347)
T ss_dssp             STTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESCC
T ss_pred             CeeecccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC-CCCEEEEEEeccc
Confidence            455666666665221     3899999999999999999999999999999 8899999998865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.58  E-value=2.9e-08  Score=88.63  Aligned_cols=41  Identities=22%  Similarity=0.297  Sum_probs=38.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      +|++++|+|+|||||||+++.|++++ .|.+|.|.++|.++.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll-~~~~g~V~l~g~D~~  141 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY-QNLGKKVMFCAGDTF  141 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEECCCCS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeecCC
Confidence            68999999999999999999999999 788999999998863

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.56  E-value=1e-07  Score=85.09  Aligned_cols=45  Identities=20%  Similarity=0.338  Sum_probs=37.3

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++...+|++++|+|+|||||||++..|++.+ .+..+.+.+.+.|.
T Consensus        98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l-~~~g~kV~lv~~D~  142 (306)
T 1vma_A           98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF-VDEGKSVVLAAADT  142 (306)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEECT
T ss_pred             cccCCCCeEEEEEcCCCChHHHHHHHHHHHH-HhcCCEEEEEcccc
Confidence            4456789999999999999999999999999 56667777665544

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.56  E-value=1.6e-08  Score=84.21  Aligned_cols=34  Identities=32%  Similarity=0.325  Sum_probs=29.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      +|+|+|++||||||+++.|++.++.+     ++|.+.+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~-----~~d~d~~~   37 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVP-----YLSSGLLY   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCc-----eeccchHH
Confidence            89999999999999999999988544     78887764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.56  E-value=8.1e-09  Score=93.53  Aligned_cols=60  Identities=20%  Similarity=0.082  Sum_probs=50.0

Q ss_pred             eEEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           82 ILWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        82 i~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      ++.+++++.|.     ++.+|++.+|++++|+|+||||||||++.|++.+ .|..|.|.+.+.++.
T Consensus        30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~-~~~~g~v~i~~~d~~   94 (337)
T 2qm8_A           30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL-TAAGHKVAVLAVDPS   94 (337)
T ss_dssp             HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEEECGG
T ss_pred             HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh-hhCCCEEEEEEEcCc
Confidence            44555555553     3448899999999999999999999999999999 788999999988763

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.55  E-value=2.6e-08  Score=83.65  Aligned_cols=43  Identities=33%  Similarity=0.330  Sum_probs=36.7

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEEEcCeec
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNC  141 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ldgd~i  141 (279)
                      .++|++++|+|+||||||||+++|++++..  +..|.|.+|+..+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence            468999999999999999999999999942  2478888888665

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.55  E-value=4.6e-08  Score=86.46  Aligned_cols=113  Identities=20%  Similarity=0.150  Sum_probs=65.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccccc-CC----CCCcccHHHHH-HHHHHHHHHHH---h
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-DL----SFKAEDRVENI-RRIGEVAKLFA---D  172 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~-~~----~~~~~~~~~~~-~~v~~~~~~~~---~  172 (279)
                      +.+|+|+|+|||||||+++.|+..+    .|..+++.|.++..+.. ..    .+.... .... ..+.+......   .
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~   76 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYTKKK-EGIVTGMQFDTAKSILYGGD   76 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCCC---CCHHH-HHHHHHHHHHHHHHHTTSCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHHHhccCCcccccccchhh-hhHHHHHHHHHHHHHHhhcc
Confidence            3689999999999999999999854    14568888877543321 01    122111 1111 11222222222   3


Q ss_pred             CCcchhcccCChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChh
Q 023675          173 AGVICIACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPK  219 (279)
Q Consensus       173 ~~~~~i~~~~~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~  219 (279)
                      .+..++++.......+++..+.++.  ..++..+++++|.+.+.+|+.+
T Consensus        77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~  125 (301)
T 1ltq_A           77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSK  125 (301)
T ss_dssp             TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHh
Confidence            4545555554444445544444332  2234568999999999988754

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.54  E-value=3.1e-09  Score=91.08  Aligned_cols=57  Identities=18%  Similarity=0.060  Sum_probs=41.5

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++++++...|..  ++.+.+ ++++|+||||||||||+++|++.+ .|.+|.|.++|.++
T Consensus         9 ~l~l~~~~~~~~~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~-~~~~G~i~~~g~~~   65 (227)
T 1qhl_A            9 SLTLINWNGFFAR--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTAL-IPDLTLLHFRNTTE   65 (227)
T ss_dssp             EEEEEEETTEEEE--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHH-SCCTTTC-------
T ss_pred             EEEEEeeecccCC--EEEEcC-cEEEEECCCCCCHHHHHHHHhccc-ccCCCeEEECCEEc
Confidence            3667776554543  677766 889999999999999999999999 88999999999876

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.54  E-value=4.5e-08  Score=80.23  Aligned_cols=38  Identities=26%  Similarity=0.374  Sum_probs=30.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      .+|+|+|++||||||+++.|+..+...+....+++.++
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~   39 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD   39 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence            36899999999999999999999854443466777443

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.54  E-value=5.4e-08  Score=81.90  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +.+++|+|++||||||+++.|++.++.+     ++|.+.+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~-----~~~~d~~   37 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMI-----YVDTGAM   37 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCE-----EEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCc-----eecCChH
Confidence            5689999999999999999999987432     6666554

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.53  E-value=1.5e-07  Score=78.53  Aligned_cols=29  Identities=24%  Similarity=0.228  Sum_probs=26.2

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ...+|.+++|+|+|||||||+++.|+..+
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45689999999999999999999999987

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.52  E-value=9e-09  Score=85.74  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=30.6

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      -..|.+|+|+|++||||||+++.|+..+..+     +++.+++
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~~d~~   54 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP-----QISTGEL   54 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhHH
Confidence            3456799999999999999999999987544     6775544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.50  E-value=3.4e-08  Score=94.56  Aligned_cols=50  Identities=14%  Similarity=0.097  Sum_probs=44.3

Q ss_pred             ecCCcce-eccCCeEEEEEcCCCChHHHHHHH--HHHccccCCccEEEEcCeec
Q 023675           91 KRDRQQL-LQQKGCVIWITGLSGSGKSTLACA--LSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        91 ~~~~~sl-~i~~g~~i~lvG~sGsGKSTl~~~--L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ..++.++ .+++|++++|+|+||||||||+++  +++.+ .|++|.++++|.+.
T Consensus        27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~-~~~~g~i~v~g~~~   79 (525)
T 1tf7_A           27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII-EFDEPGVFVTFEET   79 (525)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSSC
T ss_pred             hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEEEEeCC
Confidence            3455689 999999999999999999999999  68988 77899999999764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.50  E-value=1.5e-07  Score=78.39  Aligned_cols=29  Identities=38%  Similarity=0.585  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccC
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWR  129 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~  129 (279)
                      +|.+|+|.|++||||||+++.|+..+...
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            47899999999999999999999988543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.50  E-value=2.8e-08  Score=92.47  Aligned_cols=61  Identities=25%  Similarity=0.284  Sum_probs=48.4

Q ss_pred             CeEEeecceeecCCc---ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           81 NILWHKNSVDKRDRQ---QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~---sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      .++++++++.|....   .+..++|++++|+|||||||||++++|.+.+ .+.+|.|.+.++++.
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~~ed~ie  206 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTVEDPIE  206 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEEESSCC
T ss_pred             CCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEEecccch
Confidence            456666766664322   2234789999999999999999999999999 677899999998873

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.50  E-value=5e-07  Score=75.39  Aligned_cols=31  Identities=32%  Similarity=0.463  Sum_probs=26.8

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccC
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWR  129 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~  129 (279)
                      .++|.+|+|+|++||||||+++.|+..+..+
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~   36 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAA   36 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4578899999999999999999999987544

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.49  E-value=3e-07  Score=84.00  Aligned_cols=45  Identities=11%  Similarity=0.084  Sum_probs=36.9

Q ss_pred             ccCChHHHHH-HHHHHhC------CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675          180 CLISPYRKDR-DACRSML------PEGDFIEVFMDVPLQVCEARDPKGLYKLAR  226 (279)
Q Consensus       180 ~~~~~~~~~r-~~ar~l~------~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~  226 (279)
                      ..+|+++++| .++++++      .+|++  ++||||+..++......+++.+.
T Consensus       278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~--lllDEpt~~LD~~~~~~~~~~l~  329 (365)
T 3qf7_A          278 RGLSGGERALISISLAMSLAEVASGRLDA--FFIDEGFSSLDTENKEKIASVLK  329 (365)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHTTTTCCE--EEEESCCTTSCHHHHHHHHHHHH
T ss_pred             hhCCHHHHHHHHHHHHHHhhhcccCCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence            3588999998 8888887      68888  99999999999988777665544

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.49  E-value=5.1e-08  Score=87.93  Aligned_cols=43  Identities=26%  Similarity=0.374  Sum_probs=39.7

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      .++|++++|+|+|||||||+++.|++.+ .+..|.|.+.+.++.
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l-~~~~g~V~l~g~D~~  168 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWL-KNHGFSVVIAASDTF  168 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEECCS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH-HhcCCEEEEEeeccc
Confidence            4789999999999999999999999999 788999999998874

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.48  E-value=8.9e-08  Score=81.89  Aligned_cols=38  Identities=32%  Similarity=0.358  Sum_probs=30.5

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      -.+|.+++|+|++||||||+++.|++.++.     .++|.+.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~-----~~~d~d~~   50 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGF-----TYLDTGAM   50 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCC-----EEEEHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCC-----ceecCCCe
Confidence            456889999999999999999999997742     26676655

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.48  E-value=2.5e-07  Score=88.49  Aligned_cols=116  Identities=13%  Similarity=0.033  Sum_probs=71.4

Q ss_pred             EEeecceeecC--Cc-ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCc-cEEEEcCeecccccc---cCCCCCccc
Q 023675           83 LWHKNSVDKRD--RQ-QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK-LTYILDGDNCRHGLN---RDLSFKAED  155 (279)
Q Consensus        83 ~~~~~~~~~~~--~~-sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~-G~i~ldgd~i~~~~~---~~~~~~~~~  155 (279)
                      +.+++++.|..  +. +..+++|++++|+|+||||||||++.+++.+ .+.. ..+++.+++....+.   ..+++.   
T Consensus       259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~-~~~G~~vi~~~~ee~~~~l~~~~~~~g~~---  334 (525)
T 1tf7_A          259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA-CANKERAILFAYEESRAQLLRNAYSWGMD---  334 (525)
T ss_dssp             CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH-HTTTCCEEEEESSSCHHHHHHHHHTTSCC---
T ss_pred             ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH-HhCCCCEEEEEEeCCHHHHHHHHHHcCCC---
Confidence            44455544432  22 4588999999999999999999999999998 4432 235666543211000   000110   


Q ss_pred             HHHHHHHHHHHHHHHHhCCcchh----cccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675          156 RVENIRRIGEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR  216 (279)
Q Consensus       156 ~~~~~~~v~~~~~~~~~~~~~~i----~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R  216 (279)
                             +.   . +...+...+    ...++++++++ .+++.+..+|++  +++| |+..++..
T Consensus       335 -------~~---~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~l--lilD-p~~~Ld~~  386 (525)
T 1tf7_A          335 -------FE---E-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPAR--IAID-SLSALARG  386 (525)
T ss_dssp             -------HH---H-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSE--EEEE-CHHHHTSS
T ss_pred             -------HH---H-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCE--EEEc-ChHHHHhh
Confidence                   00   0 112222222    22367777777 667777788888  9999 99999877

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.48  E-value=4.6e-08  Score=81.67  Aligned_cols=27  Identities=37%  Similarity=0.350  Sum_probs=23.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ++|++++|+||||||||||+++|.+++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            578999999999999999999999987

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.47  E-value=6.6e-08  Score=83.27  Aligned_cols=37  Identities=22%  Similarity=0.263  Sum_probs=26.7

Q ss_pred             ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675           91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        91 ~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ..++.||++++|++++|+|+||||||||+++|++.+.
T Consensus        14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             ---------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3456689999999999999999999999999999873

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.46  E-value=5.7e-08  Score=85.24  Aligned_cols=37  Identities=30%  Similarity=0.267  Sum_probs=23.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++|+|+||||||||+|+|++.+ .|.+|.+.++|.++
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~-~~~~G~i~~~g~~i   40 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ-VSRKASSWNREEKI   40 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH-C------------C
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-CCCCCccccCCccc
Confidence            68999999999999999999999 89999999999766

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.46  E-value=2.3e-07  Score=82.08  Aligned_cols=42  Identities=21%  Similarity=0.393  Sum_probs=35.1

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~  143 (279)
                      ..+|.+++|+|+|||||||+++.|+..+.   .+.+++++|.++.
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~   71 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQ   71 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHH
Confidence            44688999999999999999999998762   3567899988763

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.45  E-value=1.5e-07  Score=89.91  Aligned_cols=118  Identities=17%  Similarity=0.223  Sum_probs=69.9

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccC----CCCCcccHHHH--HHH-----HHHHHH
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD----LSFKAEDRVEN--IRR-----IGEVAK  168 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~----~~~~~~~~~~~--~~~-----v~~~~~  168 (279)
                      ..+.+|+|+|+|||||||+++.|++.++........|+.|+++..+...    ..|.+......  +..     +..+..
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~  112 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKS  112 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHH
Confidence            4567999999999999999999999987666566778888776443221    01222111111  111     111112


Q ss_pred             HH-HhCCcchhcccCChHHHHHHHHHHhCCC--CCccEEEEeCC-ccchhccC
Q 023675          169 LF-ADAGVICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVP-LQVCEARD  217 (279)
Q Consensus       169 ~~-~~~~~~~i~~~~~~~~~~r~~ar~l~~~--~~~i~i~ld~p-~~~l~~R~  217 (279)
                      .+ ...+..++++........|+.++.++..  ..++.+.+.++ .+.+.+|.
T Consensus       113 ~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri  165 (520)
T 2axn_A          113 YLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNI  165 (520)
T ss_dssp             HHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHH
T ss_pred             HHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHH
Confidence            22 1456677777777667777666655542  23445666776 34444454

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.43  E-value=4.9e-08  Score=79.93  Aligned_cols=39  Identities=23%  Similarity=0.173  Sum_probs=30.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCC---ccEEEEcCeecc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCR  142 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~---~G~i~ldgd~i~  142 (279)
                      ++++|+|+||||||||+++|.+++ .+.   .|.|.+|+.++.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~-~~~g~~~G~I~~dg~~i~   44 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL-RERGLRVAVVKRHAHGDF   44 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH-HHTTCCEEEEEC------
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh-hhcCCceEEEEEcCcccc
Confidence            589999999999999999999999 666   899999998764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.41  E-value=3.6e-07  Score=76.43  Aligned_cols=40  Identities=28%  Similarity=0.268  Sum_probs=34.5

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      -+++|++++|+|+|||||||+++.|++   ..+.+.++++.+.
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~   55 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG   55 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence            478899999999999999999999999   3456788888764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.40  E-value=2.6e-07  Score=76.33  Aligned_cols=24  Identities=42%  Similarity=0.558  Sum_probs=22.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccc
Q 023675          104 VIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +|+|+|++||||||+++.|++.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.38  E-value=3.6e-07  Score=72.86  Aligned_cols=40  Identities=25%  Similarity=0.283  Sum_probs=34.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCcc--EEEEcCeecc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNCR  142 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G--~i~ldgd~i~  142 (279)
                      +|+.++|+|++|||||||+++|++.+. + .|  .+++++.++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGKNAAYIDAASMP   76 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTCCEEEEETTTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCCcEEEEcHHHhh
Confidence            899999999999999999999999984 4 46  8888876653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.38  E-value=5.1e-08  Score=80.05  Aligned_cols=23  Identities=43%  Similarity=0.563  Sum_probs=21.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +|+|+|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999987

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.37  E-value=6.1e-08  Score=80.60  Aligned_cols=37  Identities=30%  Similarity=0.329  Sum_probs=33.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      |++++|+|+||||||||++.|++++ . .+| +.++|.+.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~-~-~~G-i~~~g~~~   37 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL-K-SSG-VPVDGFYT   37 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH-H-HTT-CCCEEEEC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc-c-cCC-EEEcCEec
Confidence            6789999999999999999999999 5 678 88888655

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.36  E-value=1.8e-07  Score=85.36  Aligned_cols=45  Identities=18%  Similarity=0.013  Sum_probs=38.9

Q ss_pred             cCCcceeccC--CeEEEEEcCCCChHHHHHHHHHHccccCCc----cEEEEc
Q 023675           92 RDRQQLLQQK--GCVIWITGLSGSGKSTLACALSQALHWRGK----LTYILD  137 (279)
Q Consensus        92 ~~~~sl~i~~--g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~----G~i~ld  137 (279)
                      ....++.+.+  |+.++|+|+||||||||+++|++++ .+..    |.++++
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~-~~~~~~e~G~i~i~  208 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF-NTTSAWEYGREFVF  208 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT-TCEEECCTTHHHHH
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh-CCCcchhhHHHHHH
Confidence            3456889999  9999999999999999999999999 7777    777664

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.36  E-value=7.2e-07  Score=81.02  Aligned_cols=46  Identities=22%  Similarity=0.168  Sum_probs=37.9

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCc----cE-EEEcCeec
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGK----LT-YILDGDNC  141 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~----G~-i~ldgd~i  141 (279)
                      ...+++|+++.|+|+||||||||++.|++.+. .|..    |. +++++.+.
T Consensus       125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            56789999999999999999999999999873 2223    56 89998654

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.36  E-value=1.1e-07  Score=80.34  Aligned_cols=36  Identities=17%  Similarity=0.209  Sum_probs=29.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++..|+|+|++||||||+++.|+..++.     .+++.+++
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~-----~~i~~d~~   39 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQL-----AHISAGDL   39 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCC-----EECCHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC-----ceecHHHH
Confidence            4678999999999999999999998843     36675543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.36  E-value=1.1e-07  Score=84.55  Aligned_cols=45  Identities=29%  Similarity=0.248  Sum_probs=31.9

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE---cCeecc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCR  142 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l---dgd~i~  142 (279)
                      |...+|++++|+|+||||||||+|+|++++ .|..|.|.+   +|.++.
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~-~~~~G~i~~~~~~g~~~t  211 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGL-KLRVSEVSEKLQRGRHTT  211 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTC-CCC-------------CC
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccc-cccccceecccCCCCCce
Confidence            567789999999999999999999999999 899999999   787664

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.35  E-value=1.5e-07  Score=79.02  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=27.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .|+|+|++||||||+++.|+..++.+     +++.+++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~   34 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIP-----HISTGDM   34 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCC-----EEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHH
Confidence            48899999999999999999887433     6776554

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.33  E-value=1.5e-06  Score=72.91  Aligned_cols=38  Identities=24%  Similarity=0.249  Sum_probs=31.1

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l  136 (279)
                      -+++|++++|+|+||||||||++.|++.+ .+..|.+.+
T Consensus        19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~v~~   56 (235)
T 2w0m_A           19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG-LRDGDPCIY   56 (235)
T ss_dssp             SEETTCEEEEECSTTSSHHHHHHHHHHHH-HHHTCCEEE
T ss_pred             CCcCCCEEEEEcCCCCCHHHHHHHHHHHH-HHCCCeEEE
Confidence            57789999999999999999999999887 444444443

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.33  E-value=9.3e-07  Score=76.58  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=28.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+++|+|+|||||||+++.|++.++.+     ++++|++
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~-----~i~~D~~   35 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWP-----VVALDRV   35 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCC-----EEECCSG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCe-----EEeccHH
Confidence            478999999999999999999988433     6777765

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.33  E-value=1.1e-07  Score=79.92  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=26.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .|+|+|++||||||+++.|+..++.+     +++.+++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~   34 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIP-----HISTGDM   34 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc-----EeeHHHH
Confidence            58899999999999999999887433     6766554

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.32  E-value=2.9e-07  Score=77.70  Aligned_cols=36  Identities=22%  Similarity=0.237  Sum_probs=29.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +|..|+|+|++||||||+++.|+..+..     .+++.+++
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~l   39 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGL-----AHLSTGDM   39 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCC-----EEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCc-----eEEehhHH
Confidence            4568999999999999999999998843     36666544

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.30  E-value=2.2e-07  Score=88.62  Aligned_cols=44  Identities=16%  Similarity=0.105  Sum_probs=40.6

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      ++.+++|+.++|+|+|||||||++++|++++ .|+.|.+.+++.+
T Consensus       254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giitied~~  297 (511)
T 2oap_1          254 WLAIEHKFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHHTTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEESSC
T ss_pred             HHHHhCCCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEcCcc
Confidence            6678899999999999999999999999999 8899999998764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.30  E-value=3.8e-07  Score=75.94  Aligned_cols=36  Identities=31%  Similarity=0.373  Sum_probs=30.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ...+|+|+|++||||||+++.|+..++     ..++|.|++
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg-----~~vid~D~~   46 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYG-----AHVVNVDRI   46 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcC-----CEEEECcHH
Confidence            346899999999999999999999864     348888776

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.28  E-value=3.3e-07  Score=76.61  Aligned_cols=40  Identities=40%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++|++++|+|+||||||||+++|++++ .+  ...+++.+..
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~-~~--~i~~v~~d~~   42 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTL-GE--RVALLPMDHY   42 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHH-GG--GEEEEEGGGC
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHh-CC--CeEEEecCcc
Confidence            4689999999999999999999999998 33  1335555543

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.27  E-value=2.7e-07  Score=79.45  Aligned_cols=37  Identities=22%  Similarity=0.203  Sum_probs=30.1

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++..|+|+|++||||||+++.|+..++     ..+++.+++
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g-----~~~is~~~~   63 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC-----YCHLSTGDL   63 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC-----CeEEecHHH
Confidence            4678999999999999999999998874     336665543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.25  E-value=3.5e-06  Score=74.69  Aligned_cols=57  Identities=19%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             EEeecceeecC---CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           83 LWHKNSVDKRD---RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        83 ~~~~~~~~~~~---~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      .++++.+.|..   ..++.  +|++++++|++|+||||++..|++.+ .+..|.+.+.+.+.+
T Consensus        78 ~~~~l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~-~~~~~~v~l~~~d~~  137 (295)
T 1ls1_A           78 VYEALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY-KGKGRRPLLVAADTQ  137 (295)
T ss_dssp             HHHHHHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH-HHTTCCEEEEECCSS
T ss_pred             HHHHHHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEecCCcc
Confidence            33444455532   23555  89999999999999999999999999 566777777666554

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.25  E-value=3.5e-06  Score=73.70  Aligned_cols=28  Identities=32%  Similarity=0.372  Sum_probs=26.4

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +++|++++|+|+||||||||++.+++.+
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999999977

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=98.25  E-value=1.6e-06  Score=73.44  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=26.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .|+|+|++||||||+++.|+..+..     .+++.+++
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~-----~~i~~dd~   34 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSL-----AHIESGGI   34 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-----eEEchHHH
Confidence            5899999999999999999998732     35666443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.25  E-value=1.6e-07  Score=78.05  Aligned_cols=54  Identities=15%  Similarity=0.138  Sum_probs=32.3

Q ss_pred             eEEeecceeecCCc--ceeccCCeEEEEEcCCCChHHHHHHHHHHccc----cCCccEEE
Q 023675           82 ILWHKNSVDKRDRQ--QLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYI  135 (279)
Q Consensus        82 i~~~~~~~~~~~~~--sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~----~~~~G~i~  135 (279)
                      ++++++++.|....  +|.+.+|..++|+|+||||||||++.|.+...    .|..|.+.
T Consensus         4 l~~~~~~~~~~~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~   63 (210)
T 1pui_A            4 LNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ   63 (210)
T ss_dssp             -------CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------C
T ss_pred             hhhhhhhheeecCCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce
Confidence            56677777774211  58999999999999999999999999998752    34455544

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.24  E-value=4.5e-07  Score=75.61  Aligned_cols=40  Identities=38%  Similarity=0.341  Sum_probs=32.9

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg  138 (279)
                      ..++|.+++|+|+|||||||+++.|++.+ .+..|.+.+.+
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~-~~~~~~v~~~~   57 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL-REQGISVCVFH   57 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHH-hhcCCeEEEec
Confidence            45679999999999999999999999998 55566665543

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.24  E-value=1.5e-06  Score=76.26  Aligned_cols=43  Identities=23%  Similarity=0.276  Sum_probs=36.7

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      .++.+++|  ++|+||||||||||+++|++.+ .+  +.+.++|.++.
T Consensus        39 ~~l~~~~G--vlL~Gp~GtGKTtLakala~~~-~~--~~i~i~g~~l~   81 (274)
T 2x8a_A           39 LGLVTPAG--VLLAGPPGCGKTLLAKAVANES-GL--NFISVKGPELL   81 (274)
T ss_dssp             TTCCCCSE--EEEESSTTSCHHHHHHHHHHHT-TC--EEEEEETTTTC
T ss_pred             cCCCCCCe--EEEECCCCCcHHHHHHHHHHHc-CC--CEEEEEcHHHH
Confidence            36677788  9999999999999999999988 44  68999987764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.23  E-value=4.4e-07  Score=80.78  Aligned_cols=44  Identities=20%  Similarity=0.204  Sum_probs=34.0

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE---cCeecc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCR  142 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l---dgd~i~  142 (279)
                      +...+|++++|+|+||||||||+|+|. .+ .+..|.|.+   +|.++.
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~~~~~G~~~t  206 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GE-ELRTQEVSEKTERGRHTT  206 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC---------CC
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-Hh-hCcccccccccCCCCCce
Confidence            456789999999999999999999999 77 889999999   787653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.20  E-value=1.8e-07  Score=79.87  Aligned_cols=36  Identities=28%  Similarity=0.316  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+..|+|+|++||||||+++.|+..+..     .+++.+++
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~l   50 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV-----CHLATGDM   50 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTC-----EEEEHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC-----ceecHHHH
Confidence            4578999999999999999999998843     36676543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.20  E-value=2.1e-07  Score=83.04  Aligned_cols=44  Identities=25%  Similarity=0.205  Sum_probs=26.8

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE---cCeec
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNC  141 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l---dgd~i  141 (279)
                      +.+.+|++++|+|+||+|||||+|+|.+.+ .+..|.|.+   +|..+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~-~~~~G~I~~~~~~G~~t  214 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPEL-GLRTNEISEHLGRGKHT  214 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccc-cccccceeeecCCCccc
Confidence            677899999999999999999999999998 788999988   66554

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.20  E-value=4e-07  Score=80.32  Aligned_cols=47  Identities=23%  Similarity=0.104  Sum_probs=38.6

Q ss_pred             cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCcc--EEEEcCe
Q 023675           92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGD  139 (279)
Q Consensus        92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G--~i~ldgd  139 (279)
                      .++.++.+++|++++|+|+||||||||++.|++.+ .+.+|  .++++++
T Consensus        25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~-~~~~G~~v~~~~~e   73 (296)
T 1cr0_A           25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW-GTAMGKKVGLAMLE   73 (296)
T ss_dssp             HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH-HHTSCCCEEEEESS
T ss_pred             HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH-HHHcCCeEEEEeCc
Confidence            34557889999999999999999999999999998 66656  4455554

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.19  E-value=9.9e-07  Score=74.32  Aligned_cols=37  Identities=24%  Similarity=0.295  Sum_probs=29.8

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++|..|+|+|++||||||+++.|+..+..     .+++.+++
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~~   38 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHA-----AHLATGDM   38 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCC-----EEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCc-----eEEehhHH
Confidence            35778999999999999999999998843     36776554

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.17  E-value=1.3e-06  Score=74.11  Aligned_cols=42  Identities=17%  Similarity=0.177  Sum_probs=36.2

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHc--cccC-----CccEEEEcCee
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQA--LHWR-----GKLTYILDGDN  140 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~--l~~~-----~~G~i~ldgd~  140 (279)
                      -+++|++++|+|+||||||||++.|++.  + .+     +.|.+++++.+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQL-PIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTS-CGGGTCCSSEEEEEESSS
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhC-chhcCCCCCeEEEEECCC
Confidence            4678999999999999999999999994  4 33     67899999875

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.17  E-value=1.5e-06  Score=72.57  Aligned_cols=35  Identities=29%  Similarity=0.325  Sum_probs=27.2

Q ss_pred             CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675           93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+.++...+|++++|+||||||||||++.|.+.+.
T Consensus        10 ~~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           10 GRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ------CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             ccccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34567777899999999999999999999999873

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.17  E-value=1.5e-06  Score=70.72  Aligned_cols=43  Identities=26%  Similarity=0.261  Sum_probs=34.2

Q ss_pred             eEEeecceeec-CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           82 ILWHKNSVDKR-DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        82 i~~~~~~~~~~-~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      |++++.. .|. ...++.+.+| +.+|+|+||||||||+++|...+
T Consensus         7 l~i~nf~-~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A            7 LELKGFK-SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             EEEESBG-GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             EEEeCeE-eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence            4555542 333 4567888888 99999999999999999999988

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.17  E-value=2.9e-06  Score=86.12  Aligned_cols=29  Identities=28%  Similarity=0.164  Sum_probs=27.0

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHH
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACAL  122 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L  122 (279)
                      +.+|.+.+|++++|+|||||||||+++.+
T Consensus       654 disl~~~~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          654 DVYFEKDKQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             EEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred             cceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence            44888899999999999999999999999

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.16  E-value=2.7e-07  Score=89.81  Aligned_cols=42  Identities=26%  Similarity=0.090  Sum_probs=31.5

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-CccEEEEcCeec
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNC  141 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-~~G~i~ldgd~i  141 (279)
                      ++.++.   ++|+|+||||||||+++|+|++ .| ++|.|.++|.++
T Consensus        42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~-~P~~sG~vt~~g~~i   84 (608)
T 3szr_A           42 DLALPA---IAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVL   84 (608)
T ss_dssp             SCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEE
T ss_pred             cccCCe---EEEECCCCChHHHHHHHHhCCC-CCCCCCeEEEcCEEE
Confidence            345544   9999999999999999999998 66 899999999885

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.13  E-value=2.2e-06  Score=86.78  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=29.0

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      +.+|.+++|++++|+|||||||||+++.+++.
T Consensus       665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          665 NTDLSEDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             EEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             cccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            44888999999999999999999999998764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.13  E-value=7.5e-06  Score=71.94  Aligned_cols=36  Identities=44%  Similarity=0.638  Sum_probs=28.6

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +++.+|+|+|++||||||+++.|+. ++     ..+++.|++
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~-lg-----~~~id~D~~  108 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN-LG-----AYIIDSDHL  108 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH-HT-----CEEEEHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CC-----CcEEehhHH
Confidence            3467899999999999999999995 42     346777665

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.13  E-value=9.2e-07  Score=75.32  Aligned_cols=42  Identities=21%  Similarity=0.172  Sum_probs=35.6

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+...++|++++|.|++||||||++++|++.     .|.+.+.+.+.
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~   54 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPV   54 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTH
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCH
Confidence            3556789999999999999999999999987     46778887765

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.12  E-value=1.8e-06  Score=71.98  Aligned_cols=41  Identities=32%  Similarity=0.392  Sum_probs=34.2

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      -.+++|.+++|+|+|||||||+++.|++.+.    +..+++.|++
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~   56 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF   56 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence            3677899999999999999999999999872    3457777765

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.12  E-value=1.1e-06  Score=87.51  Aligned_cols=33  Identities=21%  Similarity=0.148  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEE
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTY  134 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i  134 (279)
                      |++++|+|||||||||+++.|++....+..|.+
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~  608 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSF  608 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence            999999999999999999999998632445543

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.11  E-value=6.2e-07  Score=73.10  Aligned_cols=31  Identities=29%  Similarity=0.397  Sum_probs=29.3

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ++.+++|+.++|+||||+|||||+++|++.+
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            6778889999999999999999999999998

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.11  E-value=2.5e-07  Score=79.55  Aligned_cols=37  Identities=22%  Similarity=0.198  Sum_probs=29.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHH---HccccCCccEEEEcC
Q 023675          101 KGCVIWITGLSGSGKSTLACALS---QALHWRGKLTYILDG  138 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~---~~l~~~~~G~i~ldg  138 (279)
                      ++++++|+|+|||||||++++|+   +.. .++.|.+.+++
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~-~~~~G~i~~~~   65 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ-HLSSGHFLREN   65 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCC-CEEHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCe-EecHHHHHHHH
Confidence            47999999999999999999999   655 45555555544

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.11  E-value=8e-07  Score=82.63  Aligned_cols=34  Identities=29%  Similarity=0.269  Sum_probs=30.4

Q ss_pred             CCcceeccCCeE--EEEEcCCCChHHHHHHHHHHcc
Q 023675           93 DRQQLLQQKGCV--IWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        93 ~~~sl~i~~g~~--i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ++.+|.+++|++  ++|+|+||||||||+++|+|..
T Consensus        31 ~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           31 QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             HHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             CCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            355899999999  9999999999999999999984

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.10  E-value=1.2e-05  Score=72.55  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=30.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++.+++|+||+|||||||+..|++.++     ..+|+.|..
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~-----~eiIs~Ds~   74 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFP-----LEVINSDKM   74 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSC-----EEEEECCSS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCC-----CcEEccccc
Confidence            3567999999999999999999999984     235777665

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.09  E-value=1.5e-06  Score=79.04  Aligned_cols=39  Identities=28%  Similarity=0.107  Sum_probs=30.1

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEc-Ce
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILD-GD  139 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ld-gd  139 (279)
                      .+|++++|+|+||+|||||+|+|.+.+ . +..|.|.++ |.
T Consensus       213 ~~G~~~~lvG~sG~GKSTLln~L~g~~-~~~~~G~I~~~~G~  253 (358)
T 2rcn_A          213 LTGRISIFAGQSGVGKSSLLNALLGLQ-NEILTNDVSNVSGL  253 (358)
T ss_dssp             HTTSEEEEECCTTSSHHHHHHHHHCCS-SCCCCC--------
T ss_pred             cCCCEEEEECCCCccHHHHHHHHhccc-cccccCCccccCCC
Confidence            479999999999999999999999998 7 889999876 53

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.09  E-value=1.1e-06  Score=75.05  Aligned_cols=29  Identities=28%  Similarity=0.423  Sum_probs=23.1

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ..+|.+|+|.|++||||||+++.|+..+.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35799999999999999999999999884

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=98.06  E-value=5.1e-06  Score=69.81  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=27.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEc-Ceecc
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCR  142 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld-gd~i~  142 (279)
                      +|+|+||+||||+|.++.|+..++.+     +|. ||-+|
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~-----~istGdllR   36 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFV-----HISTGDILR   36 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCe-----EEcHHHHHH
Confidence            68899999999999999999998533     666 44344

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.04  E-value=2e-06  Score=72.86  Aligned_cols=37  Identities=22%  Similarity=0.280  Sum_probs=28.7

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++.+|+|+|++||||||+++.|+..++.     .+++.+++
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~~   41 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFEL-----KHLSSGDL   41 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSS-----EEEEHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCC-----eEEechHH
Confidence            35678999999999999999999988743     36665543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.02  E-value=1.4e-06  Score=77.98  Aligned_cols=41  Identities=24%  Similarity=0.196  Sum_probs=35.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccc-------cCCccEEEEcCeecc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALH-------WRGKLTYILDGDNCR  142 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~-------~~~~G~i~ldgd~i~  142 (279)
                      =++++|+|+|||||||+++.|.+...       .++.|.|.+||..+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~   51 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG   51 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence            46899999999999999999999852       467899999998774

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.00  E-value=1.9e-06  Score=70.27  Aligned_cols=37  Identities=30%  Similarity=0.400  Sum_probs=29.8

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+|.+|+|+|++||||||+++.|+..+..     .+++.+++
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~-----~~i~~d~~   38 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGF-----KKLSTGDI   38 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTC-----EEECHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC-----eEecHHHH
Confidence            46889999999999999999999987742     36776543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.99  E-value=4.5e-06  Score=71.77  Aligned_cols=43  Identities=23%  Similarity=0.273  Sum_probs=36.2

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      .++.+++|  ++|+||||||||||+++|++.+.   .|.+.+++.++.
T Consensus        44 ~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~   86 (254)
T 1ixz_A           44 MGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV   86 (254)
T ss_dssp             TTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHH
T ss_pred             cCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHH
Confidence            36677777  89999999999999999999873   678888887653

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.98  E-value=2.3e-06  Score=71.17  Aligned_cols=33  Identities=33%  Similarity=0.490  Sum_probs=28.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+++|+|+|||||||+++.|++ +.     ..++|+|++
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg-----~~~id~d~~   35 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LG-----VPLVDADVV   35 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TT-----CCEEEHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CC-----CcccchHHH
Confidence            4799999999999999999998 53     448888876

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.98  E-value=5.1e-06  Score=78.25  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=34.2

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~  143 (279)
                      ..+.+|+|+|++||||||+++.|++.+..+......++.++++.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~   80 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRR   80 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhh
Confidence            45678999999999999999999998866655566666555543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.97  E-value=8.1e-06  Score=75.40  Aligned_cols=42  Identities=19%  Similarity=0.170  Sum_probs=33.5

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHH--HccccC-----CccEEEEcCee
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALS--QALHWR-----GKLTYILDGDN  140 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~--~~l~~~-----~~G~i~ldgd~  140 (279)
                      -+++|+++.|+|+||||||||++.|+  ..+ .+     +.+.+++++..
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~-p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQI-PLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTS-CGGGTCCSSEEEEEESSS
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhcc-CcccCCCCCcEEEEeCCC
Confidence            36899999999999999999999654  444 33     35589999875

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.97  E-value=6.6e-06  Score=70.63  Aligned_cols=30  Identities=37%  Similarity=0.502  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCC
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRG  130 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~  130 (279)
                      +|.+|+|.|++||||||+++.|+..+...+
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~   55 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNG   55 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            588999999999999999999999985443

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.96  E-value=5.9e-06  Score=69.77  Aligned_cols=36  Identities=31%  Similarity=0.356  Sum_probs=28.6

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEE
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI  135 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~  135 (279)
                      .+|.+|+|.|++||||||+++.|+..|...+...+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~   39 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL   39 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence            368899999999999999999999998544333333

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.95  E-value=6e-06  Score=72.07  Aligned_cols=43  Identities=23%  Similarity=0.273  Sum_probs=36.3

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      .++.+++|  ++|+||||||||||+++|++.+.   .|.+.+++.++.
T Consensus        68 ~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~  110 (278)
T 1iy2_A           68 MGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV  110 (278)
T ss_dssp             TTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHH
T ss_pred             cCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHH
Confidence            36777788  89999999999999999999873   678888887653

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.95  E-value=4.4e-06  Score=74.98  Aligned_cols=47  Identities=13%  Similarity=0.259  Sum_probs=38.6

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ..+|..++|++++++|++|+||||++..|++.+ .+..+.|.+.+-|+
T Consensus        97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l-~~~g~kVllid~D~  143 (320)
T 1zu4_A           97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY-AELGYKVLIAAADT  143 (320)
T ss_dssp             CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH-HHTTCCEEEEECCC
T ss_pred             CccccCCCCeEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEeCCC
Confidence            346778899999999999999999999999999 55667776655444

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.87  E-value=8.1e-06  Score=73.23  Aligned_cols=33  Identities=27%  Similarity=0.224  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcccc-CCccE
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHW-RGKLT  133 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~  133 (279)
                      .+.+++|+|+|||||||++++|.+++.. ++.|.
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~  124 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN  124 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe
Confidence            3459999999999999999999999842 34454

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.86  E-value=1.9e-05  Score=66.04  Aligned_cols=33  Identities=18%  Similarity=0.148  Sum_probs=26.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .|+|+|++||||||+++.|+..++.+     +++.+++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~-----~i~~d~~   34 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIP-----QISTGDM   34 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCC-----EEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHH
Confidence            47999999999999999999987433     5665443

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.86  E-value=0.00017  Score=64.82  Aligned_cols=44  Identities=11%  Similarity=0.132  Sum_probs=34.4

Q ss_pred             ccCChHHHHH-------HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          180 CLISPYRKDR-------DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       180 ~~~~~~~~~r-------~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      ..+|++++++       .++++++.+|++  ++||||+..++......+++.+
T Consensus       247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~--lllDEp~~~LD~~~~~~l~~~l  297 (339)
T 3qkt_A          247 TFLSGGERIALGLAFRLAMSLYLAGEISL--LILDEPTPYLDEERRRKLITIM  297 (339)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHTTTTTCE--EEEECCCTTCCHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHhcCCCCE--EEEECCCCCCCHHHHHHHHHHH
Confidence            4578888873       566777888888  9999999999998877766544

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.85  E-value=1e-05  Score=75.29  Aligned_cols=45  Identities=24%  Similarity=0.192  Sum_probs=36.6

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .++++|+ .+|.....+.+.+|++++|+|+||||||||+++|...+
T Consensus         6 ~l~~~~~-~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A            6 GLELSNF-KSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             EEEEESC-SSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCE-EEECCceeEEecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            4666776 46654334677789999999999999999999999988

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.84  E-value=7.3e-06  Score=67.53  Aligned_cols=35  Identities=43%  Similarity=0.357  Sum_probs=29.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++.+|+|+|++||||||+++.|++.      |..++|.|++
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d~~   41 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW------GYPVLDLDAL   41 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC------CCEEEcccHH
Confidence            4578999999999999999999996      3448888876

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.82  E-value=1.3e-05  Score=65.75  Aligned_cols=40  Identities=23%  Similarity=0.305  Sum_probs=32.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcccc----C------CccEEEEcCeecc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHW----R------GKLTYILDGDNCR  142 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~----~------~~G~i~ldgd~i~  142 (279)
                      -.++|+|+||||||||++.|.+....    |      ..|.+.++|.++.
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~   79 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK   79 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence            47899999999999999999998632    1      4678888887653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.78  E-value=1.8e-05  Score=72.89  Aligned_cols=40  Identities=18%  Similarity=0.163  Sum_probs=35.1

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHH------------ccccCCccEEEEcC
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQ------------ALHWRGKLTYILDG  138 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~------------~l~~~~~G~i~ldg  138 (279)
                      ++.+|..++|+|+||+|||||+|+|.+            .. .|..|.+.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi-~p~~G~v~v~~   67 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATI-DPEEAKVAVPD   67 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCC-CTTEEEEEECC
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceee-cceeeeeeeCC
Confidence            556799999999999999999999999            33 68889988876

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.78  E-value=0.00012  Score=61.39  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=26.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEE
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTY  134 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i  134 (279)
                      |.+|+|=|..||||||+++.|...| ..+...+
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L-~~~~~v~   33 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRL-VKDYDVI   33 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH-TTTSCEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHH-HCCCCEE
Confidence            6789999999999999999999998 4443333

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.78  E-value=7.6e-06  Score=67.80  Aligned_cols=32  Identities=44%  Similarity=0.607  Sum_probs=26.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +|+|+|+|||||||+++.|++ ++     ..+++.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g-----~~~i~~d~~   34 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LG-----AYVLDADKL   34 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TT-----CEEEEHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CC-----CEEEEccHH
Confidence            689999999999999999999 63     446777665

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.78  E-value=9.6e-06  Score=68.01  Aligned_cols=35  Identities=37%  Similarity=0.471  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++.+|+|+|++||||||+++.|++ +.     ..++|.|.+
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg-----~~~id~D~~   37 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LG-----INVIDADII   37 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TT-----CEEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cC-----CEEEEccHH
Confidence            467899999999999999999998 53     347887665

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.76  E-value=1.6e-05  Score=67.33  Aligned_cols=43  Identities=14%  Similarity=0.103  Sum_probs=34.6

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      -+++|+++.|+|+|||||||++..++......+.+.++++++.
T Consensus        19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A           19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            4678999999999999999997777655435667788888764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.75  E-value=2.5e-05  Score=66.72  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ...++|+|++||||||+++.|+..+..+     +++..++
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~-----~is~gdl   42 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIP-----QISTGDM   42 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCC-----EECHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCC-----eeechHH
Confidence            3468999999999999999999988544     6775443

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.74  E-value=1.9e-05  Score=67.91  Aligned_cols=44  Identities=27%  Similarity=0.309  Sum_probs=34.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccC-----CccEEEEcCeeccc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH  143 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-----~~G~i~ldgd~i~~  143 (279)
                      .+..+|+|+|++||||||+++.|+..+..+     +...+.++.|++..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~   68 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR   68 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence            345789999999999999999999987543     34566788888753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.72  E-value=1.3e-05  Score=70.99  Aligned_cols=41  Identities=22%  Similarity=0.215  Sum_probs=32.8

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCcc--EEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G--~i~ldgd~i  141 (279)
                      .+|++++|+|++|+||||++..|++.+ .+.+|  ..+++.|..
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHH-HHTTCCCEEEEECCCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCEEEEEecCcc
Confidence            468999999999999999999999999 54344  455666543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.72  E-value=1.4e-05  Score=73.30  Aligned_cols=32  Identities=31%  Similarity=0.196  Sum_probs=29.9

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .++.+++|++++|+||||||||||+++|++.+
T Consensus       162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            37889999999999999999999999999976

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.71  E-value=1.7e-05  Score=64.53  Aligned_cols=39  Identities=23%  Similarity=0.240  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd  139 (279)
                      +|.+|+|+|++||||||+++.|+..+...+....+++.+
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~   40 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG   40 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence            367899999999999999999999874221113356633

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.69  E-value=0.00012  Score=68.13  Aligned_cols=40  Identities=25%  Similarity=0.355  Sum_probs=31.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEE-EEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-ILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i-~ldgd~i  141 (279)
                      +|.+++++|++||||||++..|+..+. +..+.+ +++.|..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D~~  136 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAADVY  136 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecCcc
Confidence            589999999999999999999999994 444455 4555543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.69  E-value=1.2e-05  Score=71.47  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHHc-cccCCccEEEEcCeec
Q 023675          105 IWITGLSGSGKSTLACALSQA-LHWRGKLTYILDGDNC  141 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~-l~~~~~G~i~ldgd~i  141 (279)
                      ++|+|+||+|||||++.|.+. + .+.+| +.++|.++
T Consensus        21 I~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~~~g~~~   56 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFLTDL-YPERV-ISGAAEKI   56 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC------------------
T ss_pred             EEEECCCCCCHHHHHHHHhCCCc-cCCCC-cccCCccc
Confidence            399999999999999999987 6 56677 65555443

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.67  E-value=2.1e-05  Score=69.48  Aligned_cols=28  Identities=29%  Similarity=0.369  Sum_probs=26.1

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .++.+|+|+|++|||||||++.|.+++.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4689999999999999999999999994

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.67  E-value=2.6e-05  Score=64.30  Aligned_cols=27  Identities=30%  Similarity=0.554  Sum_probs=25.0

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .+|.+|+|+|++||||||+++.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            368899999999999999999999987

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.65  E-value=0.00021  Score=66.39  Aligned_cols=43  Identities=26%  Similarity=0.265  Sum_probs=34.4

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++.  +|++++++|++||||||++..|++.+ .+..+.+.+.+-|+
T Consensus        94 ~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l-~~~g~~Vllvd~D~  136 (425)
T 2ffh_A           94 VLK--DRNLWFLVGLQGSGKTTTAAKLALYY-KGKGRRPLLVAADT  136 (425)
T ss_dssp             CCC--SSEEEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEEECCS
T ss_pred             cCC--CCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEeeccc
Confidence            555  88999999999999999999999999 55556666544443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.64  E-value=2.3e-05  Score=71.05  Aligned_cols=40  Identities=18%  Similarity=0.150  Sum_probs=32.5

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      +++.+++|+|++|||||||++.|.+.+ .+..|.+.+-+.+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~-~~~~~~v~V~~~d  111 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKML-TERGHKLSVLAVD  111 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEECC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh-hhcCCeEEEEeec
Confidence            458899999999999999999999988 5556666555543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.64  E-value=0.00011  Score=64.98  Aligned_cols=44  Identities=23%  Similarity=0.228  Sum_probs=34.0

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEE-EcCee
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-LDGDN  140 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~-ldgd~  140 (279)
                      .++..+ |.+++++|++|+||||++..|++.+. +..+.+. +|.|.
T Consensus        92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-~~g~~v~l~~~D~  136 (297)
T 1j8m_F           92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-KKGFKVGLVGADV  136 (297)
T ss_dssp             CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred             cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecCC
Confidence            455555 99999999999999999999999994 4445555 44443

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.63  E-value=3.3e-05  Score=63.53  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccc----cC------CccEEEEcCeec
Q 023675          103 CVIWITGLSGSGKSTLACALSQALH----WR------GKLTYILDGDNC  141 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~----~~------~~G~i~ldgd~i  141 (279)
                      -.++|+|++|+|||||++.|.+...    .|      ..|.+.++|.++
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   54 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   54 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence            3689999999999999999999742    12      256788888755

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.59  E-value=2.9e-05  Score=72.05  Aligned_cols=42  Identities=21%  Similarity=0.193  Sum_probs=29.9

Q ss_pred             CCeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675           80 TNILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +.+.++++.+.|..+.     +|.      ++|+|+||+|||||++.|.+...
T Consensus        10 ~~l~~~~l~~~y~~~~vl~~vsf~------I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           10 GYVGFANLPNQVYRKSVKRGFEFT------LMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             -----CCCCCCTTTTTCC-CCCEE------EEEECCTTSSHHHHHHHHTTCCC
T ss_pred             CcEEEEecceeECCEEEecCCCEE------EEEECCCCCcHHHHHHHHhCCCC
Confidence            4577888888886432     343      49999999999999999999873

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.56  E-value=1.9e-05  Score=73.34  Aligned_cols=44  Identities=18%  Similarity=0.091  Sum_probs=36.0

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccc----------cCCccEEEEcC
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALH----------WRGKLTYILDG  138 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~----------~~~~G~i~ldg  138 (279)
                      .+|+++.++.++|+|+||||||||+++|++...          .|..|.+.+++
T Consensus       150 i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~  203 (416)
T 1udx_A          150 LRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE  203 (416)
T ss_dssp             EEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred             eeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence            388999999999999999999999999999821          44556666654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.55  E-value=3.7e-05  Score=69.35  Aligned_cols=45  Identities=24%  Similarity=0.189  Sum_probs=35.4

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      .++...++.+++|+|++|+||||+++.|++.+ .+..+.+.+-+.+
T Consensus        49 l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~-~~~~~~v~v~~~d   93 (341)
T 2p67_A           49 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL-IREGLKVAVIAVD   93 (341)
T ss_dssp             HGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH-HHTTCCEEEEEEC
T ss_pred             CCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEEeec
Confidence            36778899999999999999999999999988 4444555443333

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.55  E-value=6.2e-05  Score=77.20  Aligned_cols=46  Identities=17%  Similarity=0.089  Sum_probs=33.5

Q ss_pred             CCeEEee-----cceee-c-----CCcceeccC-------CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           80 TNILWHK-----NSVDK-R-----DRQQLLQQK-------GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        80 ~~i~~~~-----~~~~~-~-----~~~sl~i~~-------g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ..+++++     +.+.| .     ++.+|.+.+       |++++|+|||||||||+++.+ +++
T Consensus       749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~  812 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL  812 (1022)
T ss_dssp             CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred             ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence            3588888     77666 2     233777776       899999999999999999999 775

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.52  E-value=3.3e-05  Score=69.33  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=26.3

Q ss_pred             EEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +.|+||+|+||||++++|++.+..++.|.+.++|.++
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~   75 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF   75 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence            8999999999999999999954378889998888654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.51  E-value=4.5e-05  Score=74.02  Aligned_cols=47  Identities=17%  Similarity=0.162  Sum_probs=40.0

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      ++.+.+|+.+.|+||||+||||++++|++.+.....|.+.+++....
T Consensus        54 ~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~  100 (604)
T 3k1j_A           54 KTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED  100 (604)
T ss_dssp             HHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred             cccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence            77888999999999999999999999999995444488888876653

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.51  E-value=3.5e-05  Score=70.61  Aligned_cols=49  Identities=16%  Similarity=0.154  Sum_probs=41.7

Q ss_pred             CCCeEEeecceeecCC--------------------cceeccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675           79 STNILWHKNSVDKRDR--------------------QQLLQQKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        79 ~~~i~~~~~~~~~~~~--------------------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+.+.|+++++.|+..                    ..+.+.+|+.++|+|++|+|||||++.|++...
T Consensus       131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            4678899999988742                    246688999999999999999999999999874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.50  E-value=0.00021  Score=61.27  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=30.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      +.-+.|+|+||+||||++++|++.+..+   .+.+++.++.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~---~~~i~~~~~~   82 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSDFV   82 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCC---EEEECSCSST
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCC---EEEEeHHHHH
Confidence            3448899999999999999999988433   6778877764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.48  E-value=2.8e-05  Score=68.71  Aligned_cols=42  Identities=31%  Similarity=0.455  Sum_probs=29.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      ++.+|+|.|++||||||+++.|+..++..+....+++.|++.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            466899999999999999999999774222224578888875

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.47  E-value=7e-05  Score=68.04  Aligned_cols=43  Identities=26%  Similarity=0.353  Sum_probs=35.6

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +++|+++.|+|++|||||||+..++..+...+...+++++...
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s  100 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA  100 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            6789999999999999999999999988434444678888754

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.46  E-value=5.3e-05  Score=75.81  Aligned_cols=32  Identities=25%  Similarity=0.179  Sum_probs=28.7

Q ss_pred             CcceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +.+|. ++|++++|+|||||||||+++.|++..
T Consensus       600 disl~-~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          600 PLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             EEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            44777 889999999999999999999999975

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.46  E-value=5.7e-05  Score=68.75  Aligned_cols=45  Identities=13%  Similarity=0.007  Sum_probs=35.7

Q ss_pred             cCChHHHHH-HHHHHhC---------CCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675          181 LISPYRKDR-DACRSML---------PEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       181 ~~~~~~~~r-~~ar~l~---------~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                      .+|+|++++ .++++++         .+|++  ++||+|++.++......+++.+..
T Consensus       265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~i--LLLDEp~s~LD~~~~~~l~~~l~~  319 (359)
T 2o5v_A          265 YASRGEGRTVALALRRAELELLREKFGEDPV--LLLDDFTAELDPHRRQYLLDLAAS  319 (359)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCE--EEECCGGGCCCHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHhhhhhhccCCCCE--EEEeCccccCCHHHHHHHHHHHHh
Confidence            467788877 7888888         67777  899999999998887777766543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.44  E-value=0.00031  Score=65.50  Aligned_cols=42  Identities=29%  Similarity=0.462  Sum_probs=36.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      ++.+++++|++|+||||++..|+..+...+.-..+++.|..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R  140 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR  140 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            578999999999999999999999986666667778888765

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.43  E-value=5.8e-05  Score=72.40  Aligned_cols=41  Identities=29%  Similarity=0.437  Sum_probs=33.2

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg  138 (279)
                      ++.+ +|..+.|+||||+||||++++|++.+ .+..+.+.+.+
T Consensus       103 ~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~  143 (543)
T 3m6a_A          103 TKSL-KGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGG  143 (543)
T ss_dssp             SSSC-CSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC
T ss_pred             cccC-CCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecc
Confidence            4455 79999999999999999999999999 55555555444

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.40  E-value=0.00043  Score=61.96  Aligned_cols=35  Identities=31%  Similarity=0.466  Sum_probs=28.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +.+++|+||+|||||||++.|++.++     ..+++.|.+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~-----~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALP-----CELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC-----CcEEeccch
Confidence            35899999999999999999999884     335666654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.37  E-value=0.00012  Score=69.55  Aligned_cols=43  Identities=23%  Similarity=0.273  Sum_probs=35.7

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      .++.+++|  +.|+||||+|||||+++|++.+.   .+.+.+++.++.
T Consensus        59 lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~  101 (499)
T 2dhr_A           59 MGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV  101 (499)
T ss_dssp             TSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGT
T ss_pred             ccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHH
Confidence            35667777  89999999999999999999873   568888887663

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.36  E-value=7.5e-05  Score=67.00  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=23.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +.++|+||||+|||||+++|++.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            7899999999999999999999883

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.30  E-value=0.00017  Score=58.88  Aligned_cols=39  Identities=28%  Similarity=0.203  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCC--ccEEEEcCee
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDN  140 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~--~G~i~ldgd~  140 (279)
                      -.+++|+|+||||||||++.|.+.+...+  -|.+..+..+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            45899999999999999999999873221  3556655543

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.30  E-value=5.1e-05  Score=62.95  Aligned_cols=24  Identities=46%  Similarity=0.635  Sum_probs=22.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccc
Q 023675          104 VIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +|+|+|++||||||+++.|++.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999884

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.30  E-value=8.3e-05  Score=67.37  Aligned_cols=32  Identities=31%  Similarity=0.401  Sum_probs=27.6

Q ss_pred             ceeccCCeE--EEEEcCCCChHHHHHHHHHHccc
Q 023675           96 QLLQQKGCV--IWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        96 sl~i~~g~~--i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ++.+++|+.  ++|+|++||||||++++|++.+.
T Consensus        16 ~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           16 DNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            455667776  99999999999999999999875

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.27  E-value=0.0011  Score=54.87  Aligned_cols=33  Identities=42%  Similarity=0.482  Sum_probs=26.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l  136 (279)
                      +|+|=|.-||||||.++.|...|...+...++.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t   34 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK   34 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            578889999999999999999986544444443

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.27  E-value=0.00016  Score=65.42  Aligned_cols=43  Identities=28%  Similarity=0.324  Sum_probs=35.7

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      -+++|+++.|.|++|||||||+..++......+...++++.+.
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~   99 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH   99 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            3678999999999999999999998876645666678888764

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.22  E-value=0.00013  Score=64.43  Aligned_cols=42  Identities=19%  Similarity=0.192  Sum_probs=34.2

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +.+.++..+.|+||+|+||||++++|++.+.   .+.+.+++.++
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~~l   85 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPEL   85 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHHHH
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhHHH
Confidence            3467788999999999999999999999873   45677776544

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.22  E-value=0.00025  Score=58.47  Aligned_cols=23  Identities=48%  Similarity=0.505  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .|+|+||||||||||.+.|...+
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999998765

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.22  E-value=0.00023  Score=59.59  Aligned_cols=41  Identities=15%  Similarity=0.090  Sum_probs=33.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+..+.|+|++|+||||+++.++..+...+...++++..++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            57889999999999999999999988544455566766554

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.18  E-value=0.0002  Score=64.57  Aligned_cols=34  Identities=29%  Similarity=0.512  Sum_probs=28.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+|+|+||+|||||||++.|+..++     ...++.|++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence            5899999999999999999999883     346777765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.18  E-value=0.00019  Score=57.61  Aligned_cols=27  Identities=33%  Similarity=0.418  Sum_probs=23.2

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ++|..++|+|++|+|||||++.|.+..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467889999999999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.14  E-value=0.00028  Score=55.90  Aligned_cols=30  Identities=33%  Similarity=0.362  Sum_probs=24.3

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .+...+ .+.+|+|+|||||||++.+|.-.+
T Consensus        18 ~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           18 VVEFKE-GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence            444444 488999999999999999998655

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.11  E-value=0.0004  Score=56.34  Aligned_cols=26  Identities=31%  Similarity=0.197  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      -.+++|+|++||||||++..|.+.+.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence            35899999999999999999999884

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.10  E-value=0.00038  Score=62.13  Aligned_cols=43  Identities=21%  Similarity=0.195  Sum_probs=35.7

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccC------CccEEEEcCee
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWR------GKLTYILDGDN  140 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~------~~G~i~ldgd~  140 (279)
                      -+++|+++.|.|++||||||++..++.....+      +.+.++++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            46889999999999999999999998764334      56788898765

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.10  E-value=0.00037  Score=61.08  Aligned_cols=41  Identities=22%  Similarity=0.186  Sum_probs=31.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +...+.|+||+|+||||++++|++.+.......+.++...+
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~   86 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   86 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence            34689999999999999999999998433344566765544

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.07  E-value=0.00056  Score=61.62  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=35.2

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHcccc------CCccEEEEcCee
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHW------RGKLTYILDGDN  140 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~------~~~G~i~ldgd~  140 (279)
                      -+++|+++.|.|++||||||++..++.....      .+.+.++++...
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            4689999999999999999999999886312      256788898765

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.05  E-value=0.0016  Score=57.95  Aligned_cols=27  Identities=33%  Similarity=0.452  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+.+++|+||+|||||||+..|+..++
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence            356899999999999999999999873

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.02  E-value=0.00054  Score=56.31  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcccc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHW  128 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~  128 (279)
                      ..+.|.|++|+|||||+++|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~   80 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAK   80 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            68999999999999999999998843

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.02  E-value=0.00044  Score=61.62  Aligned_cols=36  Identities=25%  Similarity=0.425  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++.+++|+||+|||||||+..|+..++     ...++.|..
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds~   37 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDSM   37 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCGG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCcc
Confidence            356899999999999999999999873     234555543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.00  E-value=0.00047  Score=62.77  Aligned_cols=38  Identities=21%  Similarity=0.265  Sum_probs=30.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcccc----------CCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHW----------RGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~----------~~~G~i~ldgd~i  141 (279)
                      +++|+|++|+|||||++.|.+....          +..+.+.++|..+
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v  228 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI  228 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence            4999999999999999999987631          5568888888655

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.99  E-value=0.00057  Score=63.61  Aligned_cols=39  Identities=26%  Similarity=0.186  Sum_probs=31.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccc-----------cCCccEEEEcCeec
Q 023675          103 CVIWITGLSGSGKSTLACALSQALH-----------WRGKLTYILDGDNC  141 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~-----------~~~~G~i~ldgd~i  141 (279)
                      -.++|+|+||+|||||++.|.+...           ++..|.+.++|..+
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            4799999999999999999998752           25567888888755

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.98  E-value=0.00035  Score=70.13  Aligned_cols=40  Identities=25%  Similarity=0.305  Sum_probs=34.9

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHH
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLAC  120 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~  120 (279)
                      .|.+++...+-..+.+++++.+++++++|.||||||||+.
T Consensus        15 ~I~i~gar~hNLkni~v~iP~~~l~viTGvSGSGKSSLaf   54 (842)
T 2vf7_A           15 FVQVRGARQHNLKDISVKVPRDALVVFTGVSGSGKSSLAF   54 (842)
T ss_dssp             EEEEEEECSTTCCSEEEEEESSSEEEEESSTTSSHHHHHT
T ss_pred             eEEEeeccccCCCCeeEEecCCCEEEEECCCCCCHHHHHH
Confidence            4777877666667789999999999999999999999983

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.96  E-value=0.00042  Score=63.75  Aligned_cols=40  Identities=23%  Similarity=0.162  Sum_probs=30.5

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHc-----------cccCCccEEEEcC
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQA-----------LHWRGKLTYILDG  138 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~-----------l~~~~~G~i~ldg  138 (279)
                      .+..+..++|+|+||+|||||+++|.+.           . .|..|.+.+.+
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi-~p~~g~v~v~~   68 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTI-DPNESRVPVPD   68 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCC
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCcccc-CceeEEEEECC
Confidence            4556788999999999999999999987           3 45556665544

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=96.94  E-value=0.00029  Score=59.20  Aligned_cols=33  Identities=33%  Similarity=0.325  Sum_probs=27.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      -.|+|+|..||||||+++.|+. ++.+     ++|.|.+
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~-----vidaD~i   42 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGAS-----LVDTDLI   42 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCE-----EEEHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCc-----EEECcHH
Confidence            4689999999999999999998 5343     8898875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.94  E-value=0.00071  Score=54.08  Aligned_cols=28  Identities=21%  Similarity=0.280  Sum_probs=24.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ..+..+.|+|++|+||||+++.++..+.
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456789999999999999999999873

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.93  E-value=0.0005  Score=58.31  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=26.7

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHcccc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHW  128 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~  128 (279)
                      ...++|.+|+|.|++||||||+++.|+..+..
T Consensus        16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             ---CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34567999999999999999999999998854

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.92  E-value=0.00049  Score=58.48  Aligned_cols=26  Identities=27%  Similarity=0.232  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +|.+|+|.|.+||||||+++.|+..+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999999988

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.92  E-value=0.0036  Score=58.21  Aligned_cols=43  Identities=30%  Similarity=0.443  Sum_probs=36.5

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccC-CccEEEEcCeecc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNCR  142 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-~~G~i~ldgd~i~  142 (279)
                      .++.+++++|++|+||||++..|+..+... +.-..++|.|..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r  141 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR  141 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            457899999999999999999999988655 6777889988654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.0016  Score=60.61  Aligned_cols=43  Identities=19%  Similarity=0.081  Sum_probs=34.5

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      +-++++.-+.|.||+|||||+++++|++.+..+   .+.+++.++.
T Consensus       210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~---f~~v~~s~l~  252 (434)
T 4b4t_M          210 MGIRAPKGALMYGPPGTGKTLLARACAAQTNAT---FLKLAAPQLV  252 (434)
T ss_dssp             HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEGGGGC
T ss_pred             CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC---EEEEehhhhh
Confidence            346677889999999999999999999988543   5667776653

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.88  E-value=0.00045  Score=69.98  Aligned_cols=40  Identities=33%  Similarity=0.463  Sum_probs=35.0

Q ss_pred             CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHH
Q 023675           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA  119 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~  119 (279)
                      ..|.+++...+-..+.++.++++++++|+|+||||||||+
T Consensus        22 ~~I~i~gar~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           22 DKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             CEEEEEEECSSSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred             ceEEEeccccccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence            4577887777777788999999999999999999999997

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.88  E-value=0.00088  Score=57.07  Aligned_cols=40  Identities=20%  Similarity=0.195  Sum_probs=31.0

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++.+.-+.|.||+|+||||++++|++.+..   ..+.++..++
T Consensus        36 ~~~~~~vll~G~~GtGKT~la~~la~~~~~---~~~~~~~~~~   75 (262)
T 2qz4_A           36 AKVPKGALLLGPPGCGKTLLAKAVATEAQV---PFLAMAGAEF   75 (262)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHTC---CEEEEETTTT
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEechHHH
Confidence            345567899999999999999999998743   3566666554

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.88  E-value=0.0019  Score=55.88  Aligned_cols=40  Identities=23%  Similarity=0.189  Sum_probs=31.1

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +.++..+.|.||+|+||||++++|++.+..   ..+.++..++
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~~---~~~~v~~~~~   87 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETNA---TFIRVVGSEL   87 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTTC---EEEEEEGGGG
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEEEEehHHH
Confidence            456778999999999999999999998743   3555655444

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.0018  Score=60.14  Aligned_cols=43  Identities=16%  Similarity=0.183  Sum_probs=34.0

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      +-++++.=+.|.||+|+|||+++++|++.+..   ..+.+++.++.
T Consensus       201 ~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~---~~~~v~~~~l~  243 (428)
T 4b4t_K          201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA---AFIRVNGSEFV  243 (428)
T ss_dssp             HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC---EEEEEEGGGTC
T ss_pred             CCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecchhh
Confidence            34567777999999999999999999998853   36667766553

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.86  E-value=0.00044  Score=61.12  Aligned_cols=26  Identities=35%  Similarity=0.211  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ++..++|+|++|+|||||++.|.+.-
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            45589999999999999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.86  E-value=0.00051  Score=54.47  Aligned_cols=24  Identities=33%  Similarity=0.289  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ..++|+|++|+|||||++.|.+..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999853

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.85  E-value=0.0003  Score=62.93  Aligned_cols=32  Identities=22%  Similarity=0.438  Sum_probs=27.2

Q ss_pred             ceeccCCeE--EEEEcCCCChHHHHHHHHHHccc
Q 023675           96 QLLQQKGCV--IWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        96 sl~i~~g~~--i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +..++.|++  +.|+||+|+||||+++++++.+.
T Consensus        38 ~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           38 RKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             HHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            445566766  99999999999999999999983

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.85  E-value=0.00068  Score=56.49  Aligned_cols=27  Identities=44%  Similarity=0.363  Sum_probs=24.5

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ..|..++|+|++|||||||+..|++..
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            357889999999999999999999876

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.85  E-value=0.00033  Score=60.40  Aligned_cols=28  Identities=32%  Similarity=0.226  Sum_probs=24.8

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ..++.+|+|.|++||||||+++.|+..+
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4578899999999999999999999988

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.85  E-value=0.00074  Score=52.80  Aligned_cols=41  Identities=20%  Similarity=0.143  Sum_probs=29.8

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +.+.-+.|.|++|+|||++++.|.......+...+ ++...+
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~   62 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTP   62 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCC
Confidence            34566899999999999999999998633333344 555433

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.83  E-value=0.0032  Score=56.43  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=30.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccC------CccEEEEcCe
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWR------GKLTYILDGD  139 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~------~~G~i~ldgd  139 (279)
                      ..+..+.|+||+|+||||+++.+++.+...      +...++++..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~   87 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR   87 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence            456789999999999999999999987321      3345566653

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.0019  Score=60.09  Aligned_cols=43  Identities=16%  Similarity=0.125  Sum_probs=34.4

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      +-++++.=+.|.||+|||||+++++|++.+..+   .+.+++.++.
T Consensus       210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~---~~~v~~s~l~  252 (437)
T 4b4t_L          210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN---FIFSPASGIV  252 (437)
T ss_dssp             HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEGGGTC
T ss_pred             CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEehhhhc
Confidence            346777889999999999999999999988543   5667766553

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.0016  Score=59.91  Aligned_cols=42  Identities=19%  Similarity=0.190  Sum_probs=33.5

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      -++++.=+.|.||+|+|||++++++++.+..+   .+.+++-++.
T Consensus       178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~---f~~v~~s~l~  219 (405)
T 4b4t_J          178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCK---FIRVSGAELV  219 (405)
T ss_dssp             TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE---EEEEEGGGGS
T ss_pred             CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC---ceEEEhHHhh
Confidence            45666778999999999999999999988543   6667776653

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.82  E-value=0.00046  Score=69.88  Aligned_cols=38  Identities=37%  Similarity=0.444  Sum_probs=31.2

Q ss_pred             eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHH
Q 023675           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA  119 (279)
Q Consensus        82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~  119 (279)
                      |.+++...+-..+.++.++++++++++|+||||||||+
T Consensus         4 i~i~gar~hNLkni~~~ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A            4 IVVKGARVHNLKNITVRIPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             EEEESBCSTTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred             EEEeCccccccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence            45555555555677899999999999999999999998

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.79  E-value=0.0011  Score=59.55  Aligned_cols=40  Identities=15%  Similarity=0.077  Sum_probs=30.9

Q ss_pred             cCCe--EEEEEcCCCChHHHHHHHHHHccccC-CccEEEEcCe
Q 023675          100 QKGC--VIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGD  139 (279)
Q Consensus       100 ~~g~--~i~lvG~sGsGKSTl~~~L~~~l~~~-~~G~i~ldgd  139 (279)
                      ..+.  .+.|+|++|+||||+++.+++.+... +...++++..
T Consensus        40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~   82 (389)
T 1fnn_A           40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF   82 (389)
T ss_dssp             TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc
Confidence            3456  89999999999999999999998433 3456666643

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.79  E-value=0.00087  Score=60.79  Aligned_cols=42  Identities=29%  Similarity=0.388  Sum_probs=35.7

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      +++|.++.|.|++|+|||||+..++......+...++++...
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~  101 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  101 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            679999999999999999999998877645566788899853

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.78  E-value=0.00071  Score=59.04  Aligned_cols=39  Identities=18%  Similarity=0.167  Sum_probs=29.8

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++..+.|.||+|+||||++++|++.+..   ..+.++..++
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~---~~~~i~~~~l   90 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVATECSA---TFLNISAASL   90 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTTC---EEEEEESTTT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhCC---CeEEeeHHHH
Confidence            35678999999999999999999998742   2445555443

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.78  E-value=0.00095  Score=53.29  Aligned_cols=28  Identities=18%  Similarity=0.217  Sum_probs=24.3

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ..+..+.|+|++|+||||+++.++..+.
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456789999999999999999999873

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.77  E-value=0.00044  Score=65.74  Aligned_cols=42  Identities=24%  Similarity=0.227  Sum_probs=33.3

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .+.++|..  .-+..++.+.+| +.+|+|+||||||||+.+|...
T Consensus        42 ~L~i~nf~--~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           42 RLEIRNLA--TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             EEEEESBT--TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             eeeccccc--ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            36666543  234568888888 9999999999999999999665

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.75  E-value=0.00065  Score=60.87  Aligned_cols=40  Identities=25%  Similarity=0.348  Sum_probs=31.2

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccC---CccEEEEcCe
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDGD  139 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~---~~G~i~ldgd  139 (279)
                      ..+..+.|+|++|+|||||++.+++.+...   +...++++..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~   85 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR   85 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence            567899999999999999999999987322   3456666643

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.74  E-value=0.00093  Score=62.95  Aligned_cols=40  Identities=28%  Similarity=0.431  Sum_probs=30.5

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +.+++|  +.|+||||+||||++++|++.+..|   .+.+++.++
T Consensus        46 ~~~p~g--vLL~GppGtGKT~Laraia~~~~~~---f~~is~~~~   85 (476)
T 2ce7_A           46 ARMPKG--ILLVGPPGTGKTLLARAVAGEANVP---FFHISGSDF   85 (476)
T ss_dssp             CCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGT
T ss_pred             CCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC---eeeCCHHHH
Confidence            344555  8899999999999999999987433   556666554

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.73  E-value=0.00093  Score=55.54  Aligned_cols=30  Identities=33%  Similarity=0.362  Sum_probs=24.0

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .+.+.+ .+.+|+|+|||||||++.+|.-.+
T Consensus        18 ~i~f~~-~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           18 VVEFKE-GINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             EEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEeCC-CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            444444 488999999999999999987555

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.73  E-value=0.0008  Score=59.64  Aligned_cols=38  Identities=26%  Similarity=0.227  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg  138 (279)
                      .+..+.|.||+|+||||+++++++.+...+...++++.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~   73 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA   73 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence            35679999999999999999999988433334455554

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.0029  Score=58.63  Aligned_cols=43  Identities=19%  Similarity=0.152  Sum_probs=34.6

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      +-++++.=+.|.||+|+|||+++++|++.+..+   .+.+++.++.
T Consensus       211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~---fi~v~~s~l~  253 (437)
T 4b4t_I          211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT---FLRIVGSELI  253 (437)
T ss_dssp             HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE---EEEEESGGGC
T ss_pred             CCCCCCCCCceECCCCchHHHHHHHHHHHhCCC---EEEEEHHHhh
Confidence            345677889999999999999999999988533   6677776663

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.72  E-value=0.0008  Score=56.57  Aligned_cols=30  Identities=33%  Similarity=0.473  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCC
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRG  130 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~  130 (279)
                      +|.+|+|.|++||||||+++.|...|...+
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~   31 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG   31 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            488999999999999999999999985443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.71  E-value=0.00072  Score=61.15  Aligned_cols=35  Identities=26%  Similarity=0.126  Sum_probs=26.8

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHH--ccccCCccEE
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQ--ALHWRGKLTY  134 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~--~l~~~~~G~i  134 (279)
                      ++.++   .|+|+|.+|||||||++.|.+  ++ +.+.|.+
T Consensus        31 ~~~lp---~I~vvG~~~sGKSSLln~l~g~~~l-p~~~~~v   67 (360)
T 3t34_A           31 WDSLP---AIAVVGGQSSGKSSVLESIVGKDFL-PRGSGIV   67 (360)
T ss_dssp             -CCCC---EEEEECBTTSSHHHHHHHHHTSCCS-CCCSSSC
T ss_pred             cccCC---EEEEECCCCCcHHHHHHHHhCCCcC-CCCCCcc
Confidence            44554   899999999999999999999  44 4544433

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.71  E-value=0.0011  Score=57.94  Aligned_cols=42  Identities=26%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCC----ccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRG----KLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~----~G~i~ldgd~i  141 (279)
                      .++..+.|+|++|+||||+++.++..+...+    ...+.++..++
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l  110 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL  110 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence            4566799999999999999999998874321    24566665554

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.71  E-value=0.0012  Score=54.05  Aligned_cols=26  Identities=31%  Similarity=0.276  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +|.+++++|++||||||++..++..+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999985555444

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.69  E-value=0.00089  Score=56.44  Aligned_cols=28  Identities=36%  Similarity=0.532  Sum_probs=26.0

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+|.+|++-|++||||||+++.|...+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999999999999984

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.0022  Score=59.91  Aligned_cols=43  Identities=21%  Similarity=0.110  Sum_probs=34.6

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      +-++++.=+.|.||+|+|||+++++|++.+..+   .+.+++.++.
T Consensus       238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~---fi~vs~s~L~  280 (467)
T 4b4t_H          238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDAT---FIRVIGSELV  280 (467)
T ss_dssp             HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE---EEEEEGGGGC
T ss_pred             CCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC---eEEEEhHHhh
Confidence            346778889999999999999999999988543   5667766653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.68  E-value=0.0009  Score=53.80  Aligned_cols=23  Identities=35%  Similarity=0.345  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++|+|++|+|||||++.|.+.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999984

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.65  E-value=0.0015  Score=59.10  Aligned_cols=41  Identities=37%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      .+..+++|+|++|+||||+++.|+..+...+.-...++.|.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp  117 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP  117 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence            34568999999999999999999988754444455566553

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.62  E-value=0.0008  Score=66.02  Aligned_cols=39  Identities=23%  Similarity=0.071  Sum_probs=29.4

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEE
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTY  134 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i  134 (279)
                      ++.++++..++|+|++|+|||||++.|.+.... ...|.|
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V   42 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV   42 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence            456788999999999999999999999976531 234555

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.62  E-value=0.00075  Score=54.50  Aligned_cols=22  Identities=41%  Similarity=0.557  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .++|+|++|+|||||++.+.+.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999985

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.60  E-value=0.0011  Score=58.30  Aligned_cols=39  Identities=15%  Similarity=0.123  Sum_probs=30.0

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      .+++..+.|.||+|+|||+++++|++.+..   ..+.++...
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~---~~i~v~~~~   71 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGI---NPIMMSAGE   71 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTC---CCEEEEHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCC---CEEEEeHHH
Confidence            445667889999999999999999998843   355565433

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.57  E-value=0.0015  Score=59.66  Aligned_cols=37  Identities=27%  Similarity=0.184  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld  137 (279)
                      .+..++++|++||||||+++.|...+...+...+.+|
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            4667899999999999999999987744444444555

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.56  E-value=0.0021  Score=57.16  Aligned_cols=42  Identities=10%  Similarity=0.110  Sum_probs=33.3

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd  139 (279)
                      -+++|+++.|.|+||+||||++..++......+...+++...
T Consensus        64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE  105 (315)
T 3bh0_A           64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  105 (315)
T ss_dssp             SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            478999999999999999999999987653444456666654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.55  E-value=0.0013  Score=60.52  Aligned_cols=26  Identities=42%  Similarity=0.569  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ..+++|+||+|||||||+..|+..++
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC
Confidence            45899999999999999999999884

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.54  E-value=0.0037  Score=58.28  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=28.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +..+.|+||+|+||||++++|++.++.+   .+.+++..+
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~---~~~v~~~~~   86 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKF   86 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGG
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCC---ceeecchhh
Confidence            3458899999999999999999998543   555665444

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.54  E-value=0.0024  Score=54.44  Aligned_cols=42  Identities=21%  Similarity=0.282  Sum_probs=33.9

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      +..+.-+++++|..|+||||+++.|+..+. .+.-...+|.|.
T Consensus        10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~   51 (262)
T 1yrb_A           10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT   51 (262)
T ss_dssp             TTCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred             CCcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            345567899999999999999999998885 555566788765

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.50  E-value=0.0008  Score=62.62  Aligned_cols=42  Identities=36%  Similarity=0.544  Sum_probs=33.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      ++.+++++|++|+||||++..|+..+...+.-..+++.|..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r  139 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR  139 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence            346999999999999999999999885444446677777554

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.49  E-value=0.0021  Score=52.31  Aligned_cols=25  Identities=36%  Similarity=0.375  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .|.-+.|.|+||+||||++..|...
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            5788999999999999999998874

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.48  E-value=0.002  Score=60.12  Aligned_cols=44  Identities=16%  Similarity=0.143  Sum_probs=34.0

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEcCe
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGD  139 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ldgd  139 (279)
                      ..-+++|+++.|.|+||+||||++..++..+.. .+....++...
T Consensus       197 ~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          197 TSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             HSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             cCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            345889999999999999999999999998732 23345666543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.45  E-value=0.0017  Score=53.23  Aligned_cols=28  Identities=32%  Similarity=0.514  Sum_probs=23.2

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHH
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      ++..++. .++++|++|+|||||++.+.+
T Consensus        20 ~~~~~~~-ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           20 GLYKKTG-KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred             hccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence            4555555 578999999999999999976

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.45  E-value=0.0019  Score=56.19  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=30.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+..+.|+|++|+||||+++.|+..+..   ..+.++...+
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~---~~~~i~~~~~   86 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANA---PFIKVEATKF   86 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTC---CEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEcchhc
Confidence            4567889999999999999999998843   3566666554

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.44  E-value=0.0015  Score=55.16  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .-.|+|+|++|+|||||++.|.+..
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCCC
Confidence            3568999999999999999999875

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.44  E-value=0.0019  Score=61.16  Aligned_cols=43  Identities=35%  Similarity=0.448  Sum_probs=32.7

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      .++.+|+|+|++|+||||+++.|+..+...+.-..+++.|..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r  141 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR  141 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            4577999999999999999999998875444556677776543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.40  E-value=0.0028  Score=51.44  Aligned_cols=28  Identities=32%  Similarity=0.522  Sum_probs=20.4

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHH
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      ++..++. .++++|++|+|||||++.+.+
T Consensus        18 ~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           18 GLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             hccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            4444444 689999999999999999997

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.39  E-value=0.0028  Score=54.35  Aligned_cols=41  Identities=20%  Similarity=0.106  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+..+.|+|++|+|||++++.|...+...+...+.++...+
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~   68 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL   68 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence            34678899999999999999999987433345667765433

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.39  E-value=0.0039  Score=55.32  Aligned_cols=39  Identities=23%  Similarity=0.284  Sum_probs=29.9

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++.-+.|.||+|+|||+++++++..+..   ..+.++..++
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~~~---~~~~v~~~~l   87 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEANS---TFFSVSSSDL   87 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHHTC---EEEEEEHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHHCC---CEEEEchHHH
Confidence            35567999999999999999999998742   3555655443

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.38  E-value=0.0019  Score=53.43  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ..+.|.|++|+||||+++.+++.+.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4899999999999999999999874

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.36  E-value=0.0024  Score=56.65  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=25.2

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -+++|+++.|.|++||||||++..++..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999998864

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.36  E-value=0.003  Score=57.41  Aligned_cols=23  Identities=48%  Similarity=0.540  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHH
Q 023675          102 GCVIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      +..++|+|.+|+|||||+++|.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~   24 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTK   24 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            45789999999999999999998

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.34  E-value=0.0039  Score=50.34  Aligned_cols=39  Identities=23%  Similarity=0.194  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc----ccCCcc----EEEEcCeec
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL----HWRGKL----TYILDGDNC  141 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l----~~~~~G----~i~ldgd~i  141 (279)
                      -.++|+|.+|+|||||++.+.+..    ..++.+    .+.+++..+
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   67 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY   67 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence            468999999999999998777653    134444    455666544

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.34  E-value=0.003  Score=53.43  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=27.8

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l  136 (279)
                      .+|.++.++|++|+||||++-.++..+...+.-.+++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            4689999999999999998887777764444444555

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.34  E-value=0.0021  Score=57.28  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++.-+.|.||+|+|||+++++++..+.  +...+.+++.++
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l   82 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDL   82 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSS
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHH
Confidence            4567899999999999999999999872  234556666554

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.34  E-value=0.0019  Score=58.23  Aligned_cols=35  Identities=31%  Similarity=0.368  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg  138 (279)
                      ++..+.|+||+|+||||++++|+..+..+   .+.++.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~---~~~~~~   84 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVP---FTMADA   84 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCC---EEEech
Confidence            45678999999999999999999988433   444544

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.32  E-value=0.0032  Score=52.09  Aligned_cols=26  Identities=27%  Similarity=0.304  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ....++|+|++|+|||||++.|.+.+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            44689999999999999999999876

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.32  E-value=0.003  Score=56.65  Aligned_cols=39  Identities=28%  Similarity=0.453  Sum_probs=30.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      +|..+.|.||+|+||||+++.+++.+ ......+.+.+..
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~~~~~~~~  107 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQAL-GPDTPFTAIAGSE  107 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHH-CSSCCEEEEEGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh-cccCCcccccchh
Confidence            46789999999999999999999998 3333455555443

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.30  E-value=0.0019  Score=55.93  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++|+|++|||||||++.|.+..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999874

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.30  E-value=0.0023  Score=55.16  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=28.4

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld  137 (279)
                      .+++..+.|+||+|+||||++++++..+..+   .+.++
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~---~~~i~   96 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFP---FIKIC   96 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCS---EEEEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCC---EEEEe
Confidence            4556789999999999999999999987433   44554

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.29  E-value=0.0022  Score=50.15  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|++|+|||||++.|.+..
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcCC
Confidence            358999999999999999998754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.29  E-value=0.0027  Score=50.26  Aligned_cols=26  Identities=31%  Similarity=0.391  Sum_probs=22.6

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ++...|+++|.+|+|||||++.|.+.
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34567999999999999999999874

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.27  E-value=0.0038  Score=51.49  Aligned_cols=37  Identities=22%  Similarity=0.106  Sum_probs=27.8

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l  136 (279)
                      .+|.+++++|++||||||.+-.++..+...+.-...+
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~   42 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF   42 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            5689999999999999998888877764333333333

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.26  E-value=0.0024  Score=49.67  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|++|+|||||++.+.+.-
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998653

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.25  E-value=0.0019  Score=54.01  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=24.6

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +++...+.+.||+|+||||++.+|++.+
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            4455579999999999999999999987

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.25  E-value=0.003  Score=50.93  Aligned_cols=26  Identities=31%  Similarity=0.305  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +.-.++++|++|+|||||++.|.+..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34579999999999999999999865

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.25  E-value=0.0031  Score=56.89  Aligned_cols=39  Identities=13%  Similarity=0.162  Sum_probs=31.0

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++..+.|+|++|+||||++++|+..+..   ..+.++..++
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~---~~~~i~~~~l  153 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGA---TFFSISASSL  153 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTC---EEEEEEGGGG
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCC---eEEEEehHHh
Confidence            45678999999999999999999998742   3566666554

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.24  E-value=0.0041  Score=62.10  Aligned_cols=43  Identities=19%  Similarity=0.301  Sum_probs=34.0

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+-++++.-+.|.||+|+|||+|+++|++.+..   ..+.+++.++
T Consensus       232 ~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~---~~~~v~~~~l  274 (806)
T 3cf2_A          232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGPEI  274 (806)
T ss_dssp             SCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC---EEEEEEHHHH
T ss_pred             hcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---eEEEEEhHHh
Confidence            445677888999999999999999999998743   3566766554

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.24  E-value=0.0023  Score=49.67  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .++++|.+|+|||||++.|.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.22  E-value=0.0026  Score=49.43  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .++++|++|+|||||++.|.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998864

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.22  E-value=0.0032  Score=56.99  Aligned_cols=38  Identities=29%  Similarity=0.354  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++..+.|+||+|+||||++++|+..+..   ..+.++...+
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~---~~~~~~~~~~  108 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDI---PIAISDATSL  108 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEGGGC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCC---CEEEecchhh
Confidence            3456899999999999999999998843   3555555443

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.21  E-value=0.0035  Score=55.52  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +..+.|.|++|+|||+|+++|+..+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999999874

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.21  E-value=0.0031  Score=57.37  Aligned_cols=42  Identities=26%  Similarity=0.346  Sum_probs=34.8

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      +++|.++.|.|++|+|||||+..++......+...++++.+.
T Consensus        71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            578999999999999999999888876544556678888764

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.20  E-value=0.00095  Score=57.33  Aligned_cols=27  Identities=30%  Similarity=0.377  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHW  128 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~  128 (279)
                      +.-+.|+||+|+||||++++|++.+..
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~   70 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHV   70 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCC
Confidence            334789999999999999999998743

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.19  E-value=0.0027  Score=49.47  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|.+|+|||||++.|.+.-
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            458999999999999999998753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.17  E-value=0.0026  Score=49.81  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++++|.+|+|||||++.|.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999874

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.16  E-value=0.0041  Score=58.06  Aligned_cols=40  Identities=28%  Similarity=0.405  Sum_probs=30.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++.-+.|.||+|+|||+++++|++.+. .....+.+++-++
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~-~~~~~~~~~~~~~  101 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELG-SKVPFCPMVGSEV  101 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHC-TTSCEEEEEGGGG
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhC-CCceEEEEeHHHH
Confidence            456789999999999999999999984 2234556665544

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.16  E-value=0.0039  Score=56.07  Aligned_cols=42  Identities=14%  Similarity=0.134  Sum_probs=33.6

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd  139 (279)
                      -+++|+++.|.|+||+||||++..++......+....++..+
T Consensus        42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE   83 (338)
T 4a1f_A           42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE   83 (338)
T ss_dssp             SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            578999999999999999999999988774444445566553

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.15  E-value=0.0029  Score=49.48  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .++++|++|+|||||++.|.+.-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.14  E-value=0.0025  Score=50.22  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++|+|++|+|||||++.|.+..
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEEECCCCccHHHHHHHHhcCC
Confidence            358999999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.14  E-value=0.003  Score=49.45  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|++|+|||||++.|.+..
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            458999999999999999998864

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.13  E-value=0.0045  Score=55.07  Aligned_cols=25  Identities=44%  Similarity=0.458  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .|.-++|+|+||+||||++..|.+.
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            5889999999999999999999884

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.13  E-value=0.003  Score=49.51  Aligned_cols=24  Identities=17%  Similarity=0.209  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|.+|+|||||++.|.+.-
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            358999999999999999998753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.12  E-value=0.0031  Score=49.99  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|++|+|||||++.|.+..
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            468999999999999999998754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.11  E-value=0.0031  Score=49.21  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++++|.+|+|||||++.|.+.
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999875

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.11  E-value=0.0031  Score=49.84  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|++|+|||||++.|.+.-
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            358999999999999999998653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.11  E-value=0.0029  Score=49.53  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .++++|++|+|||||++.|.+.-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.08  E-value=0.0043  Score=48.65  Aligned_cols=25  Identities=36%  Similarity=0.551  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      +.-.++++|++|+|||||++.|.+.
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4457999999999999999999764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.08  E-value=0.0028  Score=49.74  Aligned_cols=22  Identities=41%  Similarity=0.524  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .++++|++|+|||||++.|.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4799999999999999999754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.06  E-value=0.0032  Score=49.85  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++++|.+|+|||||++.|.+.
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999876

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.04  E-value=0.0035  Score=48.96  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++++|.+|+|||||++.|.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999874

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.04  E-value=0.0031  Score=51.51  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=21.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .+.|.|++|+||||+++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999876

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.02  E-value=0.0046  Score=54.85  Aligned_cols=35  Identities=26%  Similarity=0.204  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd  139 (279)
                      ...+.|.|++|+||||+++.++..+..+   .+.+++.
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~---~~~~~~~   89 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSAN---IKTTAAP   89 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCC---EEEEEGG
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEecch
Confidence            3468999999999999999999987433   4445543

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.02  E-value=0.0038  Score=52.50  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=28.3

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHc-cccCCccEEEEcC
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQA-LHWRGKLTYILDG  138 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~-l~~~~~G~i~ldg  138 (279)
                      +++|+++.|.|++|+||||++..++-. ....+...+++..
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~   67 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL   67 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence            578999999999999999999776532 2122334555554

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.02  E-value=0.0036  Score=49.95  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|++|+|||||++.|.+..
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            358999999999999999998753

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.02  E-value=0.0038  Score=56.07  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=24.1

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ..+..+.|.||+|+||||+++.+++.+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999876

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.02  E-value=0.0029  Score=58.84  Aligned_cols=38  Identities=16%  Similarity=0.158  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEEEcCe
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGD  139 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ldgd  139 (279)
                      +..+.|.|++|+|||||+++|++.+..  ++...++++..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~  169 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE  169 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence            467999999999999999999998732  23445566544

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.01  E-value=0.0032  Score=54.80  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++|+|.+|+|||||++.|.+.
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            46899999999999999999985

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.00  E-value=0.0022  Score=50.17  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .++++|.+|+|||||++.|.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            58999999999999999997654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.98  E-value=0.0038  Score=49.95  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.|+|+|++|+|||||++.|.+.-
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999998743

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.98  E-value=0.005  Score=49.59  Aligned_cols=25  Identities=28%  Similarity=0.210  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ..-.++++|++|+|||||++.|.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999875

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.98  E-value=0.0062  Score=50.52  Aligned_cols=26  Identities=31%  Similarity=0.270  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +...++|+|.+|+|||||++.|...+
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45678999999999999999999876

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.95  E-value=0.0071  Score=56.30  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=29.7

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++.-+.|.||+|+|||+++++|+..+.  +...+.+++.++
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l  204 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDL  204 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC--
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHH
Confidence            4567899999999999999999999872  233555665544

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.94  E-value=0.004  Score=49.23  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++++|++|+|||||++.|.+.
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            45899999999999999999865

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.94  E-value=0.004  Score=50.23  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.|+|+|.+|+|||||++.|.+.-
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999998853

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.94  E-value=0.0062  Score=55.44  Aligned_cols=39  Identities=18%  Similarity=0.221  Sum_probs=30.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .++..+.|.|++|+|||+++++|+..+..   ..+.++..++
T Consensus       146 ~~~~~vLL~GppGtGKT~la~aia~~~~~---~~~~v~~~~l  184 (389)
T 3vfd_A          146 APARGLLLFGPPGNGKTMLAKAVAAESNA---TFFNISAASL  184 (389)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEECSCCC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhcC---cEEEeeHHHh
Confidence            34678999999999999999999998742   3556665544

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.93  E-value=0.0041  Score=49.96  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.|+++|.+|+|||||++.|.+..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.92  E-value=0.0055  Score=49.23  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .-.|+++|++|+|||||++.|.+.-
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCc
Confidence            4468999999999999999999863

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.91  E-value=0.0044  Score=48.32  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .++++|.+|+|||||++.+.+.
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.90  E-value=0.0038  Score=56.80  Aligned_cols=22  Identities=50%  Similarity=0.604  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .++|+|++|+|||||+++|.+.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999986

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.90  E-value=0.0043  Score=48.93  Aligned_cols=24  Identities=29%  Similarity=0.289  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|.+|+|||||++.|.+.-
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.89  E-value=0.0044  Score=49.11  Aligned_cols=24  Identities=25%  Similarity=0.392  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|.+|+|||||++.|.+.-
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            468999999999999999998754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.89  E-value=0.0041  Score=49.07  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++++|++|+|||||++.|.+.
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}

Probab=95.89  E-value=0.003  Score=52.71  Aligned_cols=35  Identities=9%  Similarity=0.126  Sum_probs=33.7

Q ss_pred             cccCCCcceeeeeeccccc--CccccccCcccccccc
Q 023675           15 AICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKA   49 (279)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~id~   49 (279)
                      .|.+||+|.|+|.++.||+  +|.+++.+|.|.++|.
T Consensus       151 ~l~~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~  187 (204)
T 3e1y_E          151 FVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE  187 (204)
T ss_dssp             CCCTTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECS
T ss_pred             CcCCCCEEEEEEEECCeEEEEEcccCcCCCCEEEEEC
Confidence            5999999999999999999  9999999999999998

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.89  E-value=0.0061  Score=48.84  Aligned_cols=25  Identities=32%  Similarity=0.236  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      --.++|+|.+|+|||||++.|.+.-
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCc
Confidence            3478999999999999999998763

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.88  E-value=0.0038  Score=56.37  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=28.7

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      .++.-+.|+||+|+||||++++|+..+..   ..+.++..+
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~v~~~~  119 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEANS---TFFSVSSSD  119 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHHTC---EEEEEEHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCC---CEEEeeHHH
Confidence            34556889999999999999999998742   244555443

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.87  E-value=0.0045  Score=49.20  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.|+|+|++|+|||||++.|.+.-
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Confidence            468999999999999999998753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.87  E-value=0.0046  Score=49.04  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|++|+|||||++.|.+.-
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998763

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.86  E-value=0.0039  Score=55.38  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=22.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccc
Q 023675          104 VIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+.|.||+|+||||+++.+++.+.
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999999874

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.86  E-value=0.0057  Score=48.54  Aligned_cols=26  Identities=15%  Similarity=0.087  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +.-.++++|.+|+|||||++.+.+.-
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence            44568999999999999999998653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.86  E-value=0.0041  Score=53.55  Aligned_cols=23  Identities=35%  Similarity=0.362  Sum_probs=21.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .++|+|.+|||||||++.|.+.-
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999863

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.84  E-value=0.0035  Score=50.14  Aligned_cols=23  Identities=39%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .++++|.+|+|||||++.|.+.-
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999998864

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.84  E-value=0.0035  Score=52.94  Aligned_cols=27  Identities=26%  Similarity=0.357  Sum_probs=22.3

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHH
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      .+..|+.++++|++||||||++..+.-
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence            456789999999999999998776543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.83  E-value=0.0059  Score=50.29  Aligned_cols=25  Identities=32%  Similarity=0.345  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .-.++|+|++|+|||||++.|.+..
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999999875

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.81  E-value=0.0051  Score=49.38  Aligned_cols=25  Identities=24%  Similarity=0.048  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      -.++|+|.+|+|||||++.|.+...
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            3589999999999999999998763

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.80  E-value=0.0066  Score=56.43  Aligned_cols=41  Identities=20%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEcCe
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGD  139 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ldgd  139 (279)
                      +++|+++.|.|++|+||||++..++..... .+...+++...
T Consensus       197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE  238 (444)
T 2q6t_A          197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE  238 (444)
T ss_dssp             CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            789999999999999999999999887632 24457777664

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.79  E-value=0.0048  Score=49.25  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|++|+|||||++.|.+.-
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998753

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.79  E-value=0.0053  Score=54.78  Aligned_cols=41  Identities=20%  Similarity=0.250  Sum_probs=30.9

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEEEcCee
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDN  140 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ldgd~  140 (279)
                      +++| ++-|.|++|||||||+-.++.....  ++...+++|+..
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~   68 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF   68 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            4678 8999999999999997666554423  255678888764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.78  E-value=0.0046  Score=48.85  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.|+++|++|+|||||++.|.+.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.78  E-value=0.0051  Score=49.92  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.|+|+|.+|+|||||++.|.+.-
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            468999999999999999998653

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.77  E-value=0.0043  Score=54.82  Aligned_cols=26  Identities=35%  Similarity=0.248  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +.-.|+|+|.+|+|||||++.|.+.-
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34589999999999999999999863

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.77  E-value=0.0053  Score=49.96  Aligned_cols=25  Identities=28%  Similarity=0.243  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .-.|+|+|.+|+|||||++.|.+..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            3468999999999999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.76  E-value=0.005  Score=49.40  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|++|+|||||++.|.+.-
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            458999999999999999998763

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.76  E-value=0.0053  Score=58.25  Aligned_cols=29  Identities=24%  Similarity=0.135  Sum_probs=26.2

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHH
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      .+.+.++..+.+.|.+||||||+++.|..
T Consensus       161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          161 VADLAKMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence            67778889999999999999999999875

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=95.76  E-value=0.0054  Score=55.62  Aligned_cols=29  Identities=31%  Similarity=0.369  Sum_probs=23.6

Q ss_pred             cceeccCCeEEEEEcCCCChHHHHHHHHHH
Q 023675           95 QQLLQQKGCVIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus        95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      ..+...+ .+.+|+|+|||||||++.+|.=
T Consensus        19 ~~i~f~~-gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           19 SRIKFEK-GIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence            3455555 5889999999999999999874

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.74  E-value=0.0054  Score=49.33  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++|+|.+|+|||||++.|.+.-
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            368999999999999999998754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.74  E-value=0.0055  Score=48.80  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      --.++|+|.+|+|||||++.|.+..
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3468999999999999999998753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.73  E-value=0.0051  Score=54.27  Aligned_cols=22  Identities=36%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .++|+|.+|+|||||++.|.+.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5999999999999999999985

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.72  E-value=0.0046  Score=54.77  Aligned_cols=26  Identities=23%  Similarity=0.424  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      |..+.|.|++|+|||++++.|+..+.
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            56799999999999999999999774

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.71  E-value=0.0057  Score=48.60  Aligned_cols=23  Identities=17%  Similarity=0.203  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++++|.+|+|||||++.|.+.
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999864

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=95.70  E-value=0.0093  Score=50.17  Aligned_cols=27  Identities=37%  Similarity=0.418  Sum_probs=21.8

Q ss_pred             cCCeEEEEEcCCCChHHH-HHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKST-LACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKST-l~~~L~~~l  126 (279)
                      ..|.+..++|++|||||| |++.+-+..
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~   53 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRGI   53 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            569999999999999999 667765544

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.70  E-value=0.0058  Score=49.19  Aligned_cols=24  Identities=29%  Similarity=0.374  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.|+|+|++|+|||||++.|.+.-
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            358999999999999999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.69  E-value=0.0063  Score=48.81  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      +.-.++++|++|+|||||++.|.+.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3457999999999999999999875

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.69  E-value=0.006  Score=52.05  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .-.|+|+|.+|+|||||++.|.+.-
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCC
Confidence            4579999999999999999998753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.68  E-value=0.0056  Score=49.49  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.|+|+|.+|+|||||++.|.+.-
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999998753

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.68  E-value=0.0097  Score=49.95  Aligned_cols=38  Identities=21%  Similarity=0.190  Sum_probs=28.6

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l  136 (279)
                      -++|.+.+++|++||||||.+-.++..+...+.-.+++
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~   62 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF   62 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            35699999999999999998888777764444434444

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.67  E-value=0.0061  Score=49.01  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.|+|+|.+|+|||||++.|.+.
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.67  E-value=0.0054  Score=54.81  Aligned_cols=27  Identities=33%  Similarity=0.481  Sum_probs=24.0

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      +++|.++.|.|++|+|||||+..++..
T Consensus       120 i~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          120 RYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            567888899999999999999999864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.67  E-value=0.0075  Score=49.27  Aligned_cols=32  Identities=31%  Similarity=0.270  Sum_probs=25.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd  139 (279)
                      ++.++|.+||||||++..|+.. .   ...++++..
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~---~~~~yiaT~   32 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-A---PQVLYIATS   32 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-C---SSEEEEECC
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-C---CCeEEEecC
Confidence            3689999999999999999865 2   346777753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.66  E-value=0.0046  Score=49.21  Aligned_cols=25  Identities=40%  Similarity=0.547  Sum_probs=21.7

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHH
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      ++.-.++++|++|+|||||++.|.+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4566899999999999999999874

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.66  E-value=0.0058  Score=48.45  Aligned_cols=25  Identities=24%  Similarity=0.193  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .-.++++|.+|+|||||++.+.+.-
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3468999999999999999998753

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.64  E-value=0.009  Score=56.62  Aligned_cols=38  Identities=21%  Similarity=0.131  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++..+.|.||+|+||||++++|++.+.   ...+.++..+.
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~---~~~i~in~s~~  113 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELG---YDILEQNASDV  113 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTT---CEEEEECTTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC---CCEEEEeCCCc
Confidence            346899999999999999999999873   23555665443

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.64  E-value=0.0079  Score=48.48  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .-.|+|+|.+|+|||||++.|.+.
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            346899999999999999999874

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.63  E-value=0.006  Score=48.48  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++|+|.+|+|||||++.|.+.
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999843

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.63  E-value=0.0059  Score=49.75  Aligned_cols=27  Identities=22%  Similarity=0.224  Sum_probs=22.8

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .+.-.|+|+|.+|+|||||++.|.+.-
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            345679999999999999999999864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.63  E-value=0.0076  Score=48.99  Aligned_cols=30  Identities=27%  Similarity=0.308  Sum_probs=22.3

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +.-++.-.|+|+|.+|+|||||++.|.+.-
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            334455679999999999999999998753

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.62  E-value=0.0062  Score=52.41  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++|+|.+|+|||||++.|.+..
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC
Confidence            358999999999999999999853

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.62  E-value=0.0058  Score=53.02  Aligned_cols=24  Identities=33%  Similarity=0.337  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++|+|.+|+|||||++.|.+..
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999863

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.59  E-value=0.0061  Score=49.55  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.|+|+|++|+|||||++.|.+.-
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.58  E-value=0.0063  Score=49.07  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.|+|+|.+|+|||||++.|.+.-
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            468999999999999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.58  E-value=0.0068  Score=49.29  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++|+|.+|+|||||++.+.+.
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999863

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.58  E-value=0.0088  Score=48.42  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      +.-.++|+|.+|+|||||++.|.+.
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3457999999999999999999875

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.57  E-value=0.0066  Score=48.53  Aligned_cols=27  Identities=19%  Similarity=0.324  Sum_probs=22.5

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ++.-.++++|++|+|||||++.+.+.-
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            455679999999999999999998643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.57  E-value=0.0069  Score=48.61  Aligned_cols=24  Identities=38%  Similarity=0.447  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.|+|+|++|+|||||++.|.+.-
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.57  E-value=0.0069  Score=48.85  Aligned_cols=24  Identities=29%  Similarity=0.314  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++|+|.+|+|||||++.|.+.-
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            368999999999999999998753

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.57  E-value=0.0058  Score=53.65  Aligned_cols=36  Identities=25%  Similarity=0.292  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd  139 (279)
                      .+..+.|.|++|+||||+++.++..+..+   .+.+++.
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~---~~~~~~~   72 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTSGP   72 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCC---EEEECTT
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCC---EEEEecc
Confidence            34678999999999999999999877422   4445543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.56  E-value=0.0069  Score=48.76  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .-.|+|+|.+|+|||||++.|.+.-
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcCC
Confidence            4568999999999999999998643

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.56  E-value=0.0079  Score=53.05  Aligned_cols=42  Identities=24%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +.+..+.|+|++|+|||++++.|.......+...+.++...+
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~   64 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL   64 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence            345678999999999999999999976433444566665433

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.55  E-value=0.0053  Score=55.37  Aligned_cols=27  Identities=37%  Similarity=0.302  Sum_probs=23.6

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ...-.++++|++|+|||||++.|.+..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345689999999999999999998864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.55  E-value=0.0065  Score=49.56  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.|+|+|++|+|||||++.|.+.-
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.53  E-value=0.0031  Score=49.07  Aligned_cols=26  Identities=23%  Similarity=0.281  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .+.-+.|.|++|+|||++++.|....
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHhC
Confidence            45568999999999999999998876

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.52  E-value=0.01  Score=55.33  Aligned_cols=41  Identities=10%  Similarity=0.148  Sum_probs=33.6

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd  139 (279)
                      +++|+++.|.|++|+||||++..++......+....++...
T Consensus       194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE  234 (444)
T 3bgw_A          194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  234 (444)
T ss_dssp             BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence            78999999999999999999998887764445566777654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.52  E-value=0.0073  Score=48.76  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .-.++++|.+|+|||||++.+.+.-
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.52  E-value=0.0067  Score=49.83  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++|+|.+|+|||||++.|.+..
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            368999999999999999988654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.51  E-value=0.0073  Score=49.31  Aligned_cols=26  Identities=31%  Similarity=0.295  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +.-.|+|+|++|+|||||++.|.+.-
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC
Confidence            44579999999999999999998653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.50  E-value=0.0084  Score=48.09  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=22.2

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ++.-.++++|.+|+|||||++.|.+.
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34567999999999999999999853

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.50  E-value=0.0039  Score=51.56  Aligned_cols=26  Identities=31%  Similarity=0.203  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ..-.|+|+|.+|+|||||++.|.+.-
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            34578999999999999999998863

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.49  E-value=0.0067  Score=52.48  Aligned_cols=22  Identities=41%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .|+|+|.+|+|||||++.|.+.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999997654

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.46  E-value=0.0073  Score=56.33  Aligned_cols=25  Identities=28%  Similarity=0.415  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ..+.|.||+|+||||++++|++.+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4689999999999999999999883

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.46  E-value=0.0075  Score=49.43  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .-.|+++|.+|+|||||++.|.+.-
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCC
Confidence            3479999999999999999998753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.45  E-value=0.0082  Score=48.40  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .-.|+|+|.+|+|||||++.+.+.
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            346899999999999999998864

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.44  E-value=0.0077  Score=53.69  Aligned_cols=44  Identities=16%  Similarity=0.042  Sum_probs=33.9

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccC-------CccEEEEcCeec
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWR-------GKLTYILDGDNC  141 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-------~~G~i~ldgd~i  141 (279)
                      ...+|..+.|.||+|+|||++++.+++.+...       .-..+++++..+
T Consensus        41 ~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~   91 (318)
T 3te6_A           41 MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL   91 (318)
T ss_dssp             HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred             cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence            34578899999999999999999999988421       224567777654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.44  E-value=0.0071  Score=53.03  Aligned_cols=23  Identities=26%  Similarity=0.252  Sum_probs=21.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .|+++|.+|+|||||++.|.+.-
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999874

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.43  E-value=0.005  Score=55.76  Aligned_cols=46  Identities=20%  Similarity=0.156  Sum_probs=26.5

Q ss_pred             CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +.+.+.++...|..+. ..-...-.++|+|++|+|||||++.|.+..
T Consensus        16 ~~v~~~~l~~~~~~k~-~~~~~~~~I~vvG~~g~GKSTLln~L~~~~   61 (361)
T 2qag_A           16 GYVGFANLPNQVHRKS-VKKGFEFTLMVVGESGLGKSTLINSLFLTD   61 (361)
T ss_dssp             -----CCHHHHHHTHH-HHHCCEECEEECCCTTSCHHHHHHHHTTCC
T ss_pred             ceEEeccchHHhCCee-ecCCCCEEEEEEcCCCCCHHHHHHHHhCCC
Confidence            4466666655554321 111111236999999999999999987653

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.43  E-value=0.011  Score=55.66  Aligned_cols=40  Identities=20%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+++..+.|.|++|+|||+++++|+..+.   ...+.++..++
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~vn~~~l  274 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEI  274 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHHCS---SEEEEEEHHHH
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHHhC---CCEEEEEchHh
Confidence            46677899999999999999999999873   33566665444

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.43  E-value=0.0076  Score=49.64  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .-.++|+|.+|+|||||++.|.+.-
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999999864

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.41  E-value=0.01  Score=48.15  Aligned_cols=27  Identities=30%  Similarity=0.461  Sum_probs=22.6

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHH
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      .-.+.-.++++|++|+|||||++.+.+
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHh
Confidence            334566799999999999999999864

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.38  E-value=0.0094  Score=48.89  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .-.++|+|.+|+|||||++.|.+..
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.36  E-value=0.0071  Score=49.32  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.|+|+|.+|+|||||++.|.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999999754

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.35  E-value=0.0087  Score=49.93  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .-.|+|+|.+|+|||||++.|.+.
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999999875

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.34  E-value=0.012  Score=55.58  Aligned_cols=28  Identities=29%  Similarity=0.376  Sum_probs=24.9

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +..|..+.|+||+|+|||++++.|+..+
T Consensus        38 l~~~~~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           38 ALSGESVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             HHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred             HhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence            3456789999999999999999999987

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.33  E-value=0.0081  Score=47.98  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .-.++++|.+|+|||||++.|.+.
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            457899999999999999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.33  E-value=0.0068  Score=49.43  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++|+|.+|+|||||++.+.+.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhc
Confidence            46899999999999999999653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.30  E-value=0.0083  Score=49.36  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.|+|+|.+|+|||||++.|.+.-
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            368999999999999999998753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.30  E-value=0.0072  Score=48.72  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +...|+|+|.+|+|||||++.|.+.-
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578999999999999999998753

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=95.29  E-value=0.011  Score=49.12  Aligned_cols=26  Identities=31%  Similarity=0.360  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      |..+|+|+|.+||||+|+++.|...+
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~   35 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRL   35 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHc
Confidence            56799999999999999999998866

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.27  E-value=0.0057  Score=48.72  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=9.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++|+|.+|+|||||++.|.+.
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEECCCCC------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.27  E-value=0.0092  Score=48.63  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++++|.+|+|||||++.+.+.-
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            368999999999999999998753

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.26  E-value=0.014  Score=55.06  Aligned_cols=41  Identities=24%  Similarity=0.092  Sum_probs=33.5

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccC-CccEEEEcCe
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGD  139 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-~~G~i~ldgd  139 (279)
                      +++|+++.|.|++|+||||++..++...... +...+++..+
T Consensus       239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E  280 (503)
T 1q57_A          239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE  280 (503)
T ss_dssp             CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred             cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence            7899999999999999999999988876333 4556777664

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.25  E-value=0.009  Score=48.30  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.|+|+|.+|+|||||++.|.+.
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1m7ga_	208	c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (A	5e-68
d1x6va3	195	c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin	2e-41
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	1e-34
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	5e-24
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	4e-23
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	3e-22
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	2e-21
d1g8fa3	122	c.37.1.15 (A:390-511) ATP sulfurylase C-terminal d	4e-21
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	9e-21
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	3e-15
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	3e-12
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	4e-08
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	5e-08
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	3e-06
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	3e-06
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	2e-05
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	4e-05
d1ihua1	296	c.37.1.10 (A:1-296) Arsenite-translocating ATPase	2e-04
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	3e-04
d1ihua2	279	c.37.1.10 (A:308-586) Arsenite-translocating ATPas	4e-04
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	4e-04
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	5e-04
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	5e-04
d1g3qa_	237	c.37.1.10 (A:) Cell division regulator MinD {Archa	6e-04
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	8e-04
d1viaa_	161	c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact	9e-04
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	0.001
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	0.002
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	0.002
d4tmka_	210	c.37.1.1 (A:) Thymidylate kinase {Escherichia coli	0.002
d1cp2a_	269	c.37.1.10 (A:) Nitrogenase iron protein {Clostridi	0.003
d1hyqa_	232	c.37.1.10 (A:) Cell division regulator MinD {Archa	0.003
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	0.003
d2iyva1	165	c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycoba	0.004
d1p6xa_	333	c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus	0.004

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score =  208 bits (529), Expect = 5e-68
 Identities = 106/210 (50%), Positives = 131/210 (62%), Gaps = 12/210 (5%)

Query: 79  STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILD 137
           STNI +H +++ + +R +L  Q+G  IW+TGLS SGKSTLA  L   L   R    Y LD
Sbjct: 1   STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 60

Query: 138 GDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP 197
           GDN R GLN+DL F   DR ENIRRI EVAKLFAD+  I I   ISPYRKDRD  R +  
Sbjct: 61  GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 120

Query: 198 EG--------DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIV 249
                      F+EV++DVP++V E RDPKGLYK AREG +K FTGI  PYE P N E+ 
Sbjct: 121 VATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVH 180

Query: 250 LKQMGDDCPSPADMVETVVSYLDENGFLRA 279
           +K   +      D V+ ++ YLD  G+L A
Sbjct: 181 VK---NYELPVQDAVKQIIDYLDTKGYLPA 207

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 2e-41
 Identities = 94/195 (48%), Positives = 119/195 (61%), Gaps = 9/195 (4%)

Query: 89  VDKRDRQQLLQQ----KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG 144
           V +  R Q++      +GC +W+TGLSG+GK+T++ AL + L   G   Y LDGDN R G
Sbjct: 2   VSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 61

Query: 145 LNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEV 204
           LN++L F  EDR EN+RRI EVAKLFADAG++CI   ISPY +DR+  R +         
Sbjct: 62  LNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFF 121

Query: 205 FMDV--PLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPAD 262
            + V  PL VCE RD KGLYK AR G++KGFTGID  YE P   E+VLK    D     D
Sbjct: 122 EVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLK---TDSCDVND 178

Query: 263 MVETVVSYLDENGFL 277
            V+ VV  L E   +
Sbjct: 179 CVQQVVELLQERDIV 193

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score =  121 bits (303), Expect = 1e-34
 Identities = 69/181 (38%), Positives = 96/181 (53%), Gaps = 5/181 (2%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-LDGDNCRHGLNRDLSFKAEDRV 157
             +G  I++TG   SGK  +A AL   L+ +G  +   L GD  RH L+ +L F  EDR 
Sbjct: 3   ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRH 62

Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRS-MLPEGDFIEVFMDVPLQVCEAR 216
            NI+RI  VA     AG   IA  I+PY + R   R  +   G F  V +  PL+ CE  
Sbjct: 63  TNIQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQS 122

Query: 217 DPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGF 276
           D +G+Y  AR G++KGFTG+DDPYE P   ++V+        S   +V  ++  L+  GF
Sbjct: 123 DKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVD---FSKQSVRSIVHEIILVLESQGF 179

Query: 277 L 277
           L
Sbjct: 180 L 180

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 93.5 bits (231), Expect = 5e-24
 Identities = 25/181 (13%), Positives = 50/181 (27%), Gaps = 22/181 (12%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLT----------YILDGDNCRHGLNRDLSFKA 153
           +I + G S +GKS +   L   L                   +         + D     
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64

Query: 154 EDRVENIRR-IGEVAKLFADAGVICI-ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ 211
                 +     E     A AG   I   +       ++  RS + + D + V +     
Sbjct: 65  GPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGA 124

Query: 212 VCEARDPKGLYKLAREGKVKGFTGID-DPYEPPLNCEIVLKQMGDDCPSPADMVETVVSY 270
           V E R+       AR  +V G            +  ++ +           +    + ++
Sbjct: 125 VAEGRE------TARGDRVAGMAAKQAYVVHEGVEYDVEVDTTHK---ESIECAWAIAAH 175

Query: 271 L 271
           +
Sbjct: 176 V 176

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 90.9 bits (224), Expect = 4e-23
 Identities = 28/178 (15%), Positives = 60/178 (33%), Gaps = 12/178 (6%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
                +  + G+SGSGKS +A  ++  LH        L        +        +DR  
Sbjct: 3   NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP 62

Query: 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
            ++ + + A        + +    +  +  RD  R   P  +   +++     V E+R  
Sbjct: 63  WLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNP--NLSFIYLKGDFDVIESR-- 118

Query: 219 KGLYKLAREGKVKGFTGID---DPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE 273
                 AR+G       +    +  + P   E  +  + D       +V + +  + +
Sbjct: 119 ----LKARKGHFFKTQMLVTQFETLQEPGADETDVLVV-DIDQPLEGVVASTIEVIKK 171

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 88.9 bits (219), Expect = 3e-22
 Identities = 21/173 (12%), Positives = 51/173 (29%), Gaps = 7/173 (4%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           ++     SG+GK+TL   L  AL  RG    ++   +    +++      E R     + 
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63

Query: 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223
              ++                 +       +   +   +E F    +           ++
Sbjct: 64  IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHR 123

Query: 224 LAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLD-ENG 275
                  +    +       L+  ++      D      + + VV ++  +NG
Sbjct: 124 PEELVIDRHVIAVASDVPLNLDVALL------DINDVEGLADFVVEWMQKQNG 170

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 86.5 bits (213), Expect = 2e-21
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 17/182 (9%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKAED 155
            G ++ ++G  GSGKST+A AL+               D+    +        L    + 
Sbjct: 3   GGNILLLSGHPGSGKSTIAEALANLPGVP---KVHFHSDDLWGYIKHGRIDPWLPQSHQQ 59

Query: 156 RVENIRRIGEVAKLFADAGVICIAC-LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCE 214
               ++   +VA  +A  G   I   ++ P         +       +       ++ C 
Sbjct: 60  NRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCL 119

Query: 215 ARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDEN 274
            R    L        +         +E       VL   G D       +++ ++ L   
Sbjct: 120 DRGGDSLSDPLVVADLHSQFADLGAFE-----HHVLPVSGKD---TDQALQSAINALQSG 171

Query: 275 GF 276
            F
Sbjct: 172 RF 173

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.0 bits (208), Expect = 4e-21
 Identities = 23/180 (12%), Positives = 50/180 (27%), Gaps = 65/180 (36%)

Query: 100 QKGCVIWITGLSGSGKSTLACAL-SQALHWRGKLTY-ILDGDNCRHGLNRDLSFKAEDRV 157
           ++G  I +       +  L+ AL S  L + G   Y I + +                  
Sbjct: 4   KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN------------------ 45

Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217
            N   +  + + F  +                         G  + +             
Sbjct: 46  -NKTELLSLIQDFIGS-------------------------GSGLIIPDQWEDDKDSVVG 79

Query: 218 PKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFL 277
            + +Y                  +   + +I L+   +     + +V+ VV +L++NGF 
Sbjct: 80  KQNVY----------------LLDTSSSADIQLESADE---PISHIVQKVVLFLEDNGFF 120

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.8 bits (211), Expect = 9e-21
 Identities = 19/175 (10%), Positives = 53/175 (30%), Gaps = 32/175 (18%)

Query: 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162
            +I + GL   GK+ ++  L++ L++ G  T   +    R  + +          +N   
Sbjct: 3   TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEG 62

Query: 163 IGEVAK------------LFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDV-- 208
           +    +            L  + G + +    +  R+ R    +   +  +   F++   
Sbjct: 63  LKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESIC 122

Query: 209 ------------------PLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLN 245
                                  ++ +    +    E     +  +D+  +  L+
Sbjct: 123 VDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLS 177

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 69.7 bits (169), Expect = 3e-15
 Identities = 24/179 (13%), Positives = 54/179 (30%), Gaps = 15/179 (8%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE---NI 160
           +  ITG +G GKST    L+  L      +  ++GD   H +        E         
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDN----SAYIEGDIINHMVVGGYRPPWESDELLALTW 59

Query: 161 RRIGEVAKLFADAG---VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD 217
           + I ++   F  A    V+                ++ + + +   + +    +    RD
Sbjct: 60  KNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRD 119

Query: 218 PKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGF 276
                K   +   +    +++     ++              P ++ + V +      F
Sbjct: 120 AL--RKKDEQMGERCLELVEEFESKGIDERYFYN---TSHLQPTNLNDIVKNLKTNPRF 173

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 61.3 bits (147), Expect = 3e-12
 Identities = 24/170 (14%), Positives = 49/170 (28%), Gaps = 7/170 (4%)

Query: 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164
           I++ G  G+GKST+   L+Q L+     +           +      + E+   +     
Sbjct: 5   IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKV 64

Query: 165 EVAKLFADAGVICIACLISPYRKDRDA--CRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222
                     V+         R+ R+    R ++   +          Q  + R    + 
Sbjct: 65  INELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVE 124

Query: 223 KLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLD 272
              RE         +  YE   +  I          S   +   ++  L+
Sbjct: 125 TPPREVLEALANERNPLYEEIADVTIRTDDQ-----SAKVVANQIIHMLE 169

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 14/179 (7%)

Query: 99  QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT--YILDGDNCRHGLNRDLSFKAEDR 156
           Q KG  I ITG  G+GK+++A  ++  L     L    ++  ++     + +L     + 
Sbjct: 2   QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEE 61

Query: 157 VENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR 216
            +  R +  +  +    G   +         D  +          + V +    +V   R
Sbjct: 62  KDEDRLLDFMEPIMVSRGNHVV---------DYHSSELFPERWFHMVVVLHTSTEVLFER 112

Query: 217 ---DPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLD 272
                    K A   + +     ++        +IVL +  D     A  VE +   ++
Sbjct: 113 LTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERVE 171

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 48.9 bits (115), Expect = 5e-08
 Identities = 22/126 (17%), Positives = 35/126 (27%), Gaps = 14/126 (11%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF--------KAED 155
           +I   G  GSGKST A    +    +    Y ++ D+ R  +              K   
Sbjct: 4   IILTIGCPGSGKSTWA----REFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59

Query: 156 RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDA--CRSMLPEGDFIEVFMDVPLQVC 213
                    +      D+    I    +   + R A    +            DVP    
Sbjct: 60  VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119

Query: 214 EARDPK 219
             R+ K
Sbjct: 120 VKRNSK 125

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 20/195 (10%), Positives = 56/195 (28%), Gaps = 31/195 (15%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLNRDLSFKAE-------- 154
           +  +TG+ G GKST+   + + L  +G    I++ GD       +    K          
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 155 -----DRVENIRRIGEVAKLFADAGVICIACLISPYRK---DRDACRSMLPEGDFIEVFM 206
                 +++  + I E A+   +  +      +               +      +   +
Sbjct: 63  EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLL 122

Query: 207 DVPLQVCEARDPK----------GLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDD 256
           +   ++  +R  +              +        +             ++++   GD 
Sbjct: 123 EADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGD- 181

Query: 257 CPSPADMVETVVSYL 271
              P+     ++  +
Sbjct: 182 ---PSIAANEIIRSM 193

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 22/192 (11%), Positives = 50/192 (26%), Gaps = 29/192 (15%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLNRDLSFKAEDRVENIRR 162
           V+ +TG+ G G +T +      L   G    ++  G         +      D++  +  
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62

Query: 163 IGE----------VAKLFADAGVIC--------IACLISPYRKDRDACRSMLPEGDFIEV 204
             +          +A++  ++ V              +           +       +E 
Sbjct: 63  ETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLII-VVET 121

Query: 205 FMDVPLQVC-----EARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPS 259
             D  L          RD      + +   +         Y       + + Q  +    
Sbjct: 122 TGDEILMRRMSDETRVRDLDTASTIEQHQFMNR--CAAMSYGVLTGATVKIVQNRNG--L 177

Query: 260 PADMVETVVSYL 271
               VE + + L
Sbjct: 178 LDQAVEELTNVL 189

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 18/157 (11%), Positives = 32/157 (20%), Gaps = 21/157 (13%)

Query: 93  DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK 152
           +   LL     V+   G  G+GKST       +  +     ++                 
Sbjct: 5   ESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGY----VHVNRDTLGSWQRCVSSCQA 60

Query: 153 AEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQV 212
           A               L     V+          + R    +               ++ 
Sbjct: 61  A---------------LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQ 105

Query: 213 CEARDPKGLYKLAREGKV--KGFTGIDDPYEPPLNCE 247
               +            V           +EPP   E
Sbjct: 106 ARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAE 142

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 23/172 (13%), Positives = 48/172 (27%), Gaps = 15/172 (8%)

Query: 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG 164
           I +TG  G GK+TL   L+     +      ++  +          +  E     +    
Sbjct: 7   ILLTGTPGVGKTTLGKELASKSGLK-----YINVGDLAREEQLYDGYDEEYDCPILDEDR 61

Query: 165 EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEAR---DPKGL 221
            V         +           D   C         I   +     V   R        
Sbjct: 62  VVD-------ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNE 114

Query: 222 YKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE 273
            KL    + + F  + +        EIV +   +      + V+ ++ ++++
Sbjct: 115 KKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQ 166

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 96  QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
           Q LQ     ++ TG  G GK++++CA +  L  +GK   ++  D
Sbjct: 2   QFLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 11/115 (9%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRI 163
           V+ I GLS SGK+TLA  LSQ L  +G    +   D+              +R +     
Sbjct: 24  VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV-----------ERAKRYHTG 72

Query: 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218
            E    +              +R+ + + +  LP  D                D 
Sbjct: 73  NEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDM 127

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 94  RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143
              + + +  +I + G  G GK+T+A A++  L   G   ++   D   H
Sbjct: 12  VDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAH 61

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN----CRHGLNRDLSFKAEDRVEN 159
           +I +TG SG+G ST+     Q     G     ++GD      R  +  +L  +       
Sbjct: 6   IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDAT 65

Query: 160 I 160
            
Sbjct: 66  F 66

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 9/40 (22%), Positives = 12/40 (30%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143
           V  + G   SGK+TL      A    G     +       
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGG 42

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 104 VIWITGLSGSGKSTLACALSQAL-----HWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158
           +I ++G + SGKS++   + Q L      +R K   IL  D+    L  +   KA     
Sbjct: 4   LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 63

Query: 159 NIRRIG 164
           N     
Sbjct: 64  NFDHPD 69

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 104 VIWIT-GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRR 162
           +I I  G  G+GK+T+   LS AL  RG+    +DGD     L+  L     D   +   
Sbjct: 4   IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVL 63

Query: 163 IGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE 198
            GE     A          + P   D +      P 
Sbjct: 64  AGEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPR 99

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR 147
            +++TG  G GK+TL    S+ L   G        +  R G  R
Sbjct: 3   HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRR 46

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

 Score = 36.8 bits (84), Expect = 9e-04
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 105 IWITGLSGSGKSTLACALSQALHWR 129
           I   G  GSGKSTLA AL++ L   
Sbjct: 3   IVFIGFMGSGKSTLARALAKDLDLV 27

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF 151
           +   + I G  GSGK+T      +  +    LT  ++     +G+N     
Sbjct: 8   QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELM 58

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 105 IWITGLSGSGKSTLACALSQALHWR 129
           I++ G  G G +T+   L++AL + 
Sbjct: 5   IFMVGARGCGMTTVGRELARALGYE 29

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEV 166
           I G +GSGKS +  A+S  L  R          + R  + +DL ++     EN       
Sbjct: 30  IIGPNGSGKSNMMDAISFVLGVRSN--------HLRSNILKDLIYRGVLNDENSDDYDNE 81

Query: 167 AKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVP 209
               ++     +        K  +  R +   GD         
Sbjct: 82  GAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKT 124

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCRHGLNRDLSFKAEDRV 157
           +   I I GL G+GK+T    + + L   G    +     G        R L    +   
Sbjct: 1   RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVG 60

Query: 158 ENIRRIGEVAKLFADAGVICIACLISPYRKD 188
           + +        +F  A V  +  +I P   +
Sbjct: 61  DEVITDKAEVLMFYAARVQLVETVIKPALAN 91

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Length = 269

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139
            + I G  G GKST    L+  LH  GK   ++  D
Sbjct: 3   QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 104 VIWIT-GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL 149
            I +  G  G+GK+T+   L  AL   G    I+D D     L   L
Sbjct: 3   TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELIL 49

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 105 IWITGLSGSGKSTLACALSQALHWR 129
             + GL GSGKST+   L++AL   
Sbjct: 4   AVLVGLPGSGKSTIGRRLAKALGVG 28

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135
                I++ G+ G GKST    ++ A        Y 
Sbjct: 4   VTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.95
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.85
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.84
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.84
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.84
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.84
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.84
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.84
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.84
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.83
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.83
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.82
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.82
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.81
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.81
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.8
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.8
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.79
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.78
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.76
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.76
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.68
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.68
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	99.51
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.5
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.48
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.36
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.35
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.34
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.33
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.29
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.14
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.98
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.97
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.87
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.85
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.82
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.77
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.71
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.65
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.62
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.6
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.56
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.46
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.44
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.44
d1zunb2	105	Sulfate adenylate transferase subunit cysN/C, EF-T	98.42
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.37
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.34
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.3
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.28
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	98.27
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.19
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.19
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	98.11
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.1
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.04
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.96
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.93
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.92
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.89
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.8
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.77
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.76
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.76
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.75
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.64
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.64
d1okkd2	207	GTPase domain of the signal recognition particle r	97.63
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.58
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.53
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.53
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.48
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.42
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.34
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.31
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.31
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.3
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.25
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.24
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.22
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.22
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.22
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.21
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.14
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.14
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.12
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.1
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.07
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.07
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.03
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.03
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.02
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.02
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.99
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.97
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.95
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.93
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.92
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.92
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.89
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.89
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.88
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.86
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.86
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.84
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.83
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.83
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.81
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.81
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.79
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.79
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.78
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.75
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.73
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.72
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.7
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.68
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.66
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.64
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.62
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.6
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.59
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.59
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.58
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.58
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.56
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.54
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.54
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.52
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.5
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.5
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.44
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.43
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.41
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.39
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.38
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.37
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.36
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.35
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.29
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.29
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.29
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.28
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.28
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.24
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.22
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.21
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.2
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.19
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.17
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.15
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.13
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.08
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.02
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.02
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.99
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.99
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.9
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.87
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.86
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.8
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.71
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.67
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.65
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.6
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.57
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.53
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.53
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.49
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.49
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.48
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.48
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.47
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.47
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.46
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.43
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.43
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.43
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.4
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.39
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.37
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.35
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.31
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.3
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.29
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.27
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.2
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.18
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.15
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.15
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.13
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.12
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.1
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.07
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.06
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.03
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.02
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.99
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.99
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	94.96
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.9
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.87
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.86
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.86
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.82
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.8
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	94.77
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.73
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.72
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.71
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.67
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.66
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.61
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.51
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	94.5
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.5
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.47
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.44
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.27
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.26
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.24
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.21
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.18
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.04
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.04
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.02
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.79
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	93.66
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	93.62
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.59
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.49
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.47
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.42
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.4
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	93.32
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.28
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.28
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.21
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.17
d1jnya2	107	Elongation factor eEF-1alpha, C-terminal domain {A	93.12
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.03
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	92.82
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.8
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.58
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.57
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.39
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.3
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	92.05
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.99
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.99
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.98
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	91.84
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.77
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	91.27
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.23
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	91.12
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.11
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	90.69
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	90.37
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	90.32
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.25
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	90.01
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	89.57
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	89.41
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	88.93
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	88.93
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	88.69
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	88.29
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	87.27
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	87.24
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.5
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	85.99
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	84.83
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	83.37
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	83.07

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.95  E-value=3.7e-28  Score=204.99  Aligned_cols=196  Identities=53%  Similarity=0.850  Sum_probs=174.2

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCeecccccccCCCCCcccHHHH
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN  159 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~  159 (279)
                      +|.|+...++..+|..+..++|.+|||+|+|||||||+++.|...+. ..+...+++|||.+++.+..+.+|+..++.+.
T Consensus         3 ~~~~~~~~~~~~~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~ys~~~r~~~   82 (208)
T d1m7ga_           3 NITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNEN   82 (208)
T ss_dssp             CCCHHHHCCCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHH
T ss_pred             CcccccCCcCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCCCChhHHHHH
Confidence            56666656677777888999999999999999999999999997763 23456889999999999988899999999999


Q ss_pred             HHHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCC--------CCCccEEEEeCCccchhccChhhHHHHHhCCCCC
Q 023675          160 IRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLP--------EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK  231 (279)
Q Consensus       160 ~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~--------~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~  231 (279)
                      ..++..++..+...+..+++...++....|+.++.+..        ...|++||+++|.+.|.+|..++++.....+.+.
T Consensus        83 ~~r~~~~a~~~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y~~~~~~~~~  162 (208)
T d1m7ga_          83 IRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIK  162 (208)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHhccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccchhhhhcCccc
Confidence            99999999999999999999999998888888887641        2368899999999999999999999999999999


Q ss_pred             CCccccCcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCccC
Q 023675          232 GFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLRA  279 (279)
Q Consensus       232 ~~~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~~~  279 (279)
                      .+.++..+|++|..++++|||   +..++++++++|+++|+++|++++
T Consensus       163 ~~~gvd~~ye~P~~~dl~Idt---~~~s~~e~~~~Ii~~L~~~~~i~~  207 (208)
T d1m7ga_         163 EFTGISAPYEAPANPEVHVKN---YELPVQDAVKQIIDYLDTKGYLPA  207 (208)
T ss_dssp             SCBTTTBCCCCCSSCSEEEEC---SSSCHHHHHHHHHHHHHHTTCSCC
T ss_pred             ceecccccCCCCCCCcEEEeC---CCCCHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999   888999999999999999999874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-22  Score=174.84  Aligned_cols=147  Identities=18%  Similarity=0.183  Sum_probs=104.0

Q ss_pred             CCCCeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675           78 KSTNILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L  145 (279)
Q Consensus        78 ~~~~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~  145 (279)
                      ..+.|+++|++|+|+++        .||++++|++++|+|+||||||||+++|.|++ .|.+|.|++||.++...    +
T Consensus         8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~-~p~~G~I~i~g~~i~~~~~~~~   86 (251)
T d1jj7a_           8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY-QPTGGQLLLDGKPLPQYEHRYL   86 (251)
T ss_dssp             CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGGGBCHHHH
T ss_pred             ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhccc-CCCcCEEEECCEecchhhhHHH
Confidence            34679999999999753        28999999999999999999999999999999 89999999999988531    1


Q ss_pred             ccCC--------------------CCCcccH-HHHHHHH--HHHHHHHHhC--Ccc----hhcccCChHHHHH-HHHHHh
Q 023675          146 NRDL--------------------SFKAEDR-VENIRRI--GEVAKLFADA--GVI----CIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       146 ~~~~--------------------~~~~~~~-~~~~~~v--~~~~~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l  195 (279)
                      +..+                    +...... .......  ......+...  +..    ..+..+|++++|| .+||++
T Consensus        87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal  166 (251)
T d1jj7a_          87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL  166 (251)
T ss_dssp             HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred             HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence            0001                    1111110 0111110  0011111111  221    1334689999999 999999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLARE  227 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~  227 (279)
                      +.+|++  +++|||++.++......+++.+.+
T Consensus       167 ~~~p~i--lilDEpTs~LD~~~~~~i~~~l~~  196 (251)
T d1jj7a_         167 IRKPCV--LILDDATSALDANSQLQVEQLLYE  196 (251)
T ss_dssp             TTCCSE--EEEESTTTTCCHHHHHHHHHHHHT
T ss_pred             ccCCcE--EEecCcCcccChhhHHHHHHHHHH
Confidence            999998  999999999999887777766543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.5e-22  Score=173.58  Aligned_cols=142  Identities=19%  Similarity=0.243  Sum_probs=100.3

Q ss_pred             CeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675           81 NILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL  149 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~  149 (279)
                      +|+|+|++|+|...       .||++++|++++|+|+||||||||+++|+|++ .|.+|.|++||.++...    ++..+
T Consensus         1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~lr~~i   79 (241)
T d2pmka1           1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-IPENGQVLIDGHDLALADPNWLRRQV   79 (241)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC-CCCCCEEEECCEEecccchhhhhceE
Confidence            47899999999532       29999999999999999999999999999999 89999999999998531    11111


Q ss_pred             CCCcc-------cH------------HHHHHHHHHHHH---HHHh--CCc----chhcccCChHHHHH-HHHHHhCCCCC
Q 023675          150 SFKAE-------DR------------VENIRRIGEVAK---LFAD--AGV----ICIACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       150 ~~~~~-------~~------------~~~~~~v~~~~~---~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      ++.++       ..            .+.+......+.   .+..  .+.    ...+..+|+++++| .+||+++.+|+
T Consensus        80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~  159 (241)
T d2pmka1          80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK  159 (241)
T ss_dssp             EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence            11111       00            111111111111   1111  111    12345689999999 99999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHH
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +  ++||||++.++....+.+++.+
T Consensus       160 i--lilDEpts~LD~~~~~~i~~~l  182 (241)
T d2pmka1         160 I--LIFDEATSALDYESEHVIMRNM  182 (241)
T ss_dssp             E--EEECCCCSCCCHHHHHHHHHHH
T ss_pred             h--hhhhCCccccCHHHHHHHHHHH
Confidence            8  9999999999998877765543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.84  E-value=1.2e-21  Score=166.29  Aligned_cols=141  Identities=17%  Similarity=0.143  Sum_probs=100.7

Q ss_pred             eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-------
Q 023675           82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------  145 (279)
Q Consensus        82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-------  145 (279)
                      |+++|++++|..         +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...-       
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~-~p~sG~I~~~g~~i~~~~~~~~~~~   80 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD-KPTEGEVYIDNIKTNDLDDDELTKI   80 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCC-CCCcceeEECCEEcCcCChhhcchh
Confidence            567788777753         349999999999999999999999999999999 899999999999884310       


Q ss_pred             -ccCCCCCcc--------cHHHH---------------HHHHHHHHHHHHhCCcch-----hcccCChHHHHH-HHHHHh
Q 023675          146 -NRDLSFKAE--------DRVEN---------------IRRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSM  195 (279)
Q Consensus       146 -~~~~~~~~~--------~~~~~---------------~~~v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l  195 (279)
                       ...+++.++        ...+.               ......+...+...++..     .+..+|++++|| .+||++
T Consensus        81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL  160 (230)
T d1l2ta_          81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL  160 (230)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhh
Confidence             011121111        00000               011122233333334322     355689999999 999999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +.+|++  +++|||+..++......+++.+
T Consensus       161 ~~~P~l--LllDEPTs~LD~~~~~~i~~~l  188 (230)
T d1l2ta_         161 ANNPPI--ILADQPTGALDSKTGEKIMQLL  188 (230)
T ss_dssp             TTCCSE--EEEESTTTTSCHHHHHHHHHHH
T ss_pred             hcCCCE--EEecCCccccCHHHHHHHHHHH
Confidence            999999  9999999999998887765543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.84  E-value=4.1e-21  Score=164.75  Aligned_cols=140  Identities=18%  Similarity=0.187  Sum_probs=99.9

Q ss_pred             eEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----ccccCCCC
Q 023675           82 ILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSF  151 (279)
Q Consensus        82 i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~~~~~~  151 (279)
                      |+++|++|+|++..      ||++++|++++|+|+||||||||+++|+|++ .|.+|.|++||.++..    .++..++|
T Consensus         2 le~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~   80 (242)
T d1mv5a_           2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-QPTAGEITIDGQPIDNISLENWRSQIGF   80 (242)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-CCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             EEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhh-CCCCCEEEECCEEeccccHHHHHhheEE
Confidence            68999999996532      9999999999999999999999999999999 8999999999998853    12222333


Q ss_pred             Cccc-------HHHH-------------HHHHHHHHHHHHh-----CCcc----hhcccCChHHHHH-HHHHHhCCCCCc
Q 023675          152 KAED-------RVEN-------------IRRIGEVAKLFAD-----AGVI----CIACLISPYRKDR-DACRSMLPEGDF  201 (279)
Q Consensus       152 ~~~~-------~~~~-------------~~~v~~~~~~~~~-----~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~  201 (279)
                      .+++       .++.             .....+.+.+...     .+..    ..+..+|+++++| .+||+++.+|++
T Consensus        81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i  160 (242)
T d1mv5a_          81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI  160 (242)
T ss_dssp             ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            2221       1111             1111111111000     0110    1233589999999 999999999998


Q ss_pred             cEEEEeCCccchhccChhhHHHH
Q 023675          202 IEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       202 i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                        ++||||++.++......+++.
T Consensus       161 --lilDEpts~LD~~~~~~i~~~  181 (242)
T d1mv5a_         161 --LMLDEATASLDSESESMVQKA  181 (242)
T ss_dssp             --EEEECCSCSSCSSSCCHHHHH
T ss_pred             --EEecCCccccCHHHHHHHHHH
Confidence              999999999998887665543

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=4.7e-21  Score=165.38  Aligned_cols=146  Identities=17%  Similarity=0.273  Sum_probs=103.3

Q ss_pred             cCCCCeEEeecceeecCCc-------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675           77 AKSTNILWHKNSVDKRDRQ-------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L  145 (279)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~~-------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~  145 (279)
                      ...+.|+++|++|+|+.+.       ||++++|++++|+|+||||||||+++|+|++ .|.+|.|++||.++...    +
T Consensus         9 ~~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~~   87 (253)
T d3b60a1           9 RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDEGHILMDGHDLREYTLASL   87 (253)
T ss_dssp             CCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-CCSEEEEEETTEETTTBCHHHH
T ss_pred             CCceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc-CCCccEEEECCcccchhhhhhh
Confidence            4557899999999997532       9999999999999999999999999999999 89999999999988531    1


Q ss_pred             ccCCCCCcc--------------------cHHHHHHHHHHH---HHHHHh--CCcc----hhcccCChHHHHH-HHHHHh
Q 023675          146 NRDLSFKAE--------------------DRVENIRRIGEV---AKLFAD--AGVI----CIACLISPYRKDR-DACRSM  195 (279)
Q Consensus       146 ~~~~~~~~~--------------------~~~~~~~~v~~~---~~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l  195 (279)
                      ...++|.++                    ...+.+....+.   ......  .|+.    ..+..+|++++|| .+||++
T Consensus        88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal  167 (253)
T d3b60a1          88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL  167 (253)
T ss_dssp             HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred             hheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHH
Confidence            111111111                    001111111111   111111  1221    2334589999999 999999


Q ss_pred             CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +.+|++  ++||||++.++....+.+++.+
T Consensus       168 ~~~p~i--lilDEpts~LD~~~~~~i~~~l  195 (253)
T d3b60a1         168 LRDSPI--LILDEATSALDTESERAIQAAL  195 (253)
T ss_dssp             HHCCSE--EEEETTTSSCCHHHHHHHHHHH
T ss_pred             hcCCCE--EEeccccccCCHHHHHHHHHHH
Confidence            999998  9999999999998877665543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.8e-21  Score=165.45  Aligned_cols=137  Identities=15%  Similarity=0.107  Sum_probs=88.7

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE  154 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~  154 (279)
                      |+++|++++|.+     +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...  ....++|.++
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~-~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q   79 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-TITSGDLFIGEKRMNDTPPAERGVGMVFQ   79 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCCEEEECCEECCCCchhhceeeeecc
Confidence            467777777754     449999999999999999999999999999999 89999999999988421  1112222222


Q ss_pred             cH-----------------------HHHHHHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEE
Q 023675          155 DR-----------------------VENIRRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFM  206 (279)
Q Consensus       155 ~~-----------------------~~~~~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~l  206 (279)
                      +.                       .+..+++.+   ++...++.    ..+..+|++++|| .+||+++.+|++  +++
T Consensus        80 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~---~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~i--lll  154 (232)
T d2awna2          80 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ---VAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLL  154 (232)
T ss_dssp             SCCC---------------------CHHHHHHHH---HHHHC---------------------CHHHHHHTCCSE--EEE
T ss_pred             ccccccchhHHHHHHHHHHHcCCCHHHHHHHHHH---HHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEE
Confidence            10                       011112222   22222222    2455689999999 999999999998  999


Q ss_pred             eCCccchhccChhhHHHH
Q 023675          207 DVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       207 d~p~~~l~~R~~~~l~~~  224 (279)
                      |||+..++......+++.
T Consensus       155 DEPts~LD~~~~~~i~~~  172 (232)
T d2awna2         155 DEPLSNLDAALRVQMRIE  172 (232)
T ss_dssp             ESTTTTSCHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHH
Confidence            999999999887765543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=5.2e-21  Score=163.11  Aligned_cols=137  Identities=16%  Similarity=0.139  Sum_probs=100.8

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCc
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKA  153 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~  153 (279)
                      .|+++|++.+|.+     +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...  ....++|.+
T Consensus         6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~-~p~sG~I~i~g~~i~~~~~~~r~ig~v~   84 (239)
T d1v43a3           6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE-EPTEGRIYFGDRDVTYLPPKDRNISMVF   84 (239)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCCEEEEcceecccCCcccceEEEEe
Confidence            4778888888764     449999999999999999999999999999999 89999999999998531  111233322


Q ss_pred             ccH-----------------------HHHHHHHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675          154 EDR-----------------------VENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF  205 (279)
Q Consensus       154 ~~~-----------------------~~~~~~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~  205 (279)
                      ++.                       .+..+++.++   +...++..    ....+|++++|| .+||+++.+|++  ++
T Consensus        85 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~---l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~i--Ll  159 (239)
T d1v43a3          85 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA---AELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV--LL  159 (239)
T ss_dssp             C------CCCHHHHHHTTCC--CCCHHHHHHHHHHH---HHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE--EE
T ss_pred             echhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHH---HHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCc--ee
Confidence            211                       1112222222   22233322    355688999999 999999999999  99


Q ss_pred             EeCCccchhccChhhHHH
Q 023675          206 MDVPLQVCEARDPKGLYK  223 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~  223 (279)
                      +|||+..++......+.+
T Consensus       160 lDEPts~LD~~~~~~i~~  177 (239)
T d1v43a3         160 MDEPLSNLDAKLRVAMRA  177 (239)
T ss_dssp             EESTTTTSCHHHHHHHHH
T ss_pred             ecCCcccCCHHHHHHHHH
Confidence            999999999888776554

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=8.5e-21  Score=161.96  Aligned_cols=138  Identities=18%  Similarity=0.202  Sum_probs=101.6

Q ss_pred             CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cc
Q 023675           81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LN  146 (279)
Q Consensus        81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~  146 (279)
                      .|+++|++.+|..       +.||++++|++++|+||||||||||+++|++++ .|++|.|+++|.++...       .+
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~-~p~~G~I~~~g~~i~~~~~~~~~~~r   81 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD-VPSTGELYFDDRLVASNGKLIVPPED   81 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS-CCSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCc-CCCCceEEECCEEeecCchhhcchhh
Confidence            3677888877742       349999999999999999999999999999999 89999999999987421       11


Q ss_pred             cCCCCCcc-----------------------cHHHHHHHHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675          147 RDLSFKAE-----------------------DRVENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE  198 (279)
Q Consensus       147 ~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~  198 (279)
                      ..++|.++                       ...+..+++.++.   ...++..    ....+|++++|| .+||+++.+
T Consensus        82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l---~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~  158 (242)
T d1oxxk2          82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVA---KILDIHHVLNHFPRELSGAQQQRVALARALVKD  158 (242)
T ss_dssp             SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHH---HHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHH---hhcChHhhhhCChhhCCHHHHhHHHHHhHHhhc
Confidence            12222222                       1112222333333   3333322    355689999999 999999999


Q ss_pred             CCccEEEEeCCccchhccChhhHHHH
Q 023675          199 GDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       199 ~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      |++  +++|||+..++......+.+.
T Consensus       159 P~l--lllDEPt~~LD~~~~~~i~~~  182 (242)
T d1oxxk2         159 PSL--LLLDEPFSNLDARMRDSARAL  182 (242)
T ss_dssp             CSE--EEEESTTTTSCGGGHHHHHHH
T ss_pred             ccc--eeecCCccCCCHHHHHHHHHH
Confidence            998  999999999999988775543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.83  E-value=7e-21  Score=162.51  Aligned_cols=140  Identities=18%  Similarity=0.147  Sum_probs=100.8

Q ss_pred             eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------cccC
Q 023675           82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRD  148 (279)
Q Consensus        82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------~~~~  148 (279)
                      |+++|++++|.+     +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...        ....
T Consensus         4 i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~-~p~sG~I~~~g~~i~~~~~~~~~~~~~r~   82 (240)
T d1g2912           4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE-EPSRGQIYIGDKLVADPEKGIFVPPKDRD   82 (240)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred             EEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCCEEEECCEEecccchhhhccccccc
Confidence            677777777764     449999999999999999999999999999999 89999999999887321        0122


Q ss_pred             CCCCccc-----------------------HHHHHHHHHHHHHHHHhCCc-chhcccCChHHHHH-HHHHHhCCCCCccE
Q 023675          149 LSFKAED-----------------------RVENIRRIGEVAKLFADAGV-ICIACLISPYRKDR-DACRSMLPEGDFIE  203 (279)
Q Consensus       149 ~~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~~-~~i~~~~~~~~~~r-~~ar~l~~~~~~i~  203 (279)
                      +++.+++                       ..+..+++.++...+.-... ......+|++++|| .+||+++.+|++  
T Consensus        83 ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~i--  160 (240)
T d1g2912          83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV--  160 (240)
T ss_dssp             EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE--
T ss_pred             ceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence            2322221                       11112223333332221111 12355689999999 999999999999  


Q ss_pred             EEEeCCccchhccChhhHHHH
Q 023675          204 VFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       204 i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +++|||+..++......+++.
T Consensus       161 LllDEPt~~LD~~~~~~i~~~  181 (240)
T d1g2912         161 FLMDEPLSNLDAKLRVRMRAE  181 (240)
T ss_dssp             EEEECTTTTSCHHHHHHHHHH
T ss_pred             EEecCCCcccCHHHHHHHHHH
Confidence            999999999999887775543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.83  E-value=4.5e-21  Score=162.51  Aligned_cols=140  Identities=17%  Similarity=0.205  Sum_probs=100.5

Q ss_pred             eEEeecceeecC----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCccc
Q 023675           82 ILWHKNSVDKRD----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAED  155 (279)
Q Consensus        82 i~~~~~~~~~~~----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~~~  155 (279)
                      |+++|++.+|.+    +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++.+.-  ...++|.+++
T Consensus         2 i~v~nlsk~y~~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~-~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~   80 (229)
T d3d31a2           2 IEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH-VPDSGRILLDGKDVTDLSPEKHDIAFVYQN   80 (229)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS-CCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred             EEEEEEEEEeCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCc-CCCCCEEEEccEeccccchhHhcceeeccc
Confidence            567777777765    349999999999999999999999999999999 899999999999985321  1123322221


Q ss_pred             --------HHHHHHH---------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccch
Q 023675          156 --------RVENIRR---------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC  213 (279)
Q Consensus       156 --------~~~~~~~---------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l  213 (279)
                              -.+.+..         -..+...+...++..    .+..+|++++|| ++||+++.+|++  +++|||+..+
T Consensus        81 ~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~i--LllDEPts~L  158 (229)
T d3d31a2          81 YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI--LLLDEPLSAL  158 (229)
T ss_dssp             CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE--EEEESSSTTS
T ss_pred             cccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCc--eeecCCCcCC
Confidence                    1111110         011222222223222    355689999999 999999999999  9999999999


Q ss_pred             hccChhhHHHH
Q 023675          214 EARDPKGLYKL  224 (279)
Q Consensus       214 ~~R~~~~l~~~  224 (279)
                      +......+.+.
T Consensus       159 D~~~~~~i~~~  169 (229)
T d3d31a2         159 DPRTQENAREM  169 (229)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99887765543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.82  E-value=1.4e-20  Score=162.39  Aligned_cols=146  Identities=19%  Similarity=0.217  Sum_probs=103.8

Q ss_pred             cCCCCeEEeecceeecCCc-------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675           77 AKSTNILWHKNSVDKRDRQ-------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L  145 (279)
Q Consensus        77 ~~~~~i~~~~~~~~~~~~~-------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~  145 (279)
                      ...+.|+++|++|+|+++.       ||++++|++++|+|+||||||||+++|.|++ .|.+|.|.+||.+++..    +
T Consensus        12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~l   90 (255)
T d2hyda1          12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-DVTSGQILIDGHNIKDFLTGSL   90 (255)
T ss_dssp             CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-CCSEEEEEETTEEGGGSCHHHH
T ss_pred             CCCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcC-CccccccccCCEEcccCCHHHh
Confidence            3457899999999997532       8999999999999999999999999999999 89999999999988532    1


Q ss_pred             ccCCCCCcc-------cHH------------HHHHHHHHHH---HHHHh--CCc----chhcccCChHHHHH-HHHHHhC
Q 023675          146 NRDLSFKAE-------DRV------------ENIRRIGEVA---KLFAD--AGV----ICIACLISPYRKDR-DACRSML  196 (279)
Q Consensus       146 ~~~~~~~~~-------~~~------------~~~~~v~~~~---~~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~  196 (279)
                      +..++|.++       ..+            +.+....+.+   .....  .|+    ...+..+|+++++| .+||+++
T Consensus        91 r~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~  170 (255)
T d2hyda1          91 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL  170 (255)
T ss_dssp             HHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred             hheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHh
Confidence            111111111       001            1111111111   11111  111    12344589999999 9999999


Q ss_pred             CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675          197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      .+|++  ++||||++.++....+.+++.+
T Consensus       171 ~~p~i--lilDEpts~LD~~t~~~i~~~l  197 (255)
T d2hyda1         171 NNPPI--LILDEATSALDLESESIIQEAL  197 (255)
T ss_dssp             HCCSE--EEEESTTTTCCHHHHHHHHHHH
T ss_pred             cCCCE--EEEeCccccCCHHHHHHHHHHH
Confidence            99998  9999999999998877766544

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=7.5e-21  Score=162.34  Aligned_cols=141  Identities=17%  Similarity=0.173  Sum_probs=99.3

Q ss_pred             eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------c
Q 023675           82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L  145 (279)
Q Consensus        82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~  145 (279)
                      |+++|++.+|..         +.||++++|++++|+||||||||||+++|+|++ .|++|+|.++|.++...       +
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~-~p~sG~I~~~g~~i~~~~~~~~~~~   80 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEGSVLVDGQELTTLSESELTKA   80 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSS-CCSEEEEEETTEEECTTCHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCc-cccCCceEEcCeEeeeCChhhhhhh
Confidence            567777777753         339999999999999999999999999999999 89999999999998421       1


Q ss_pred             ccCCCCCccc--------HHH---------------HHHHHHHHHHHHHhCC-cchhcccCChHHHHH-HHHHHhCCCCC
Q 023675          146 NRDLSFKAED--------RVE---------------NIRRIGEVAKLFADAG-VICIACLISPYRKDR-DACRSMLPEGD  200 (279)
Q Consensus       146 ~~~~~~~~~~--------~~~---------------~~~~v~~~~~~~~~~~-~~~i~~~~~~~~~~r-~~ar~l~~~~~  200 (279)
                      +..++|.+++        ..+               ...++.++...+.-.. .......+|++++|| .+||+++.+|+
T Consensus        81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~  160 (240)
T d3dhwc1          81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK  160 (240)
T ss_dssp             HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCS
T ss_pred             hccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCC
Confidence            1112222211        111               1112222222221111 122455689999999 99999999999


Q ss_pred             ccEEEEeCCccchhccChhhHHHHH
Q 023675          201 FIEVFMDVPLQVCEARDPKGLYKLA  225 (279)
Q Consensus       201 ~i~i~ld~p~~~l~~R~~~~l~~~~  225 (279)
                      +  +++|||+..++......+++.+
T Consensus       161 l--LllDEPt~~LD~~~~~~i~~~l  183 (240)
T d3dhwc1         161 V--LLCDEATSALDPATTRSILELL  183 (240)
T ss_dssp             E--EEEESGGGSSCHHHHHHHHHHH
T ss_pred             e--EEeccccccCCHHHhhHHHHHH
Confidence            8  9999999999998877755433

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.81  E-value=8.1e-20  Score=156.35  Aligned_cols=141  Identities=15%  Similarity=0.170  Sum_probs=100.2

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-----ccCCC
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLS  150 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-----~~~~~  150 (279)
                      .++++|++++|..     +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...-     +..++
T Consensus         6 ~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~-~p~~G~I~~~G~~i~~~~~~~~~r~gi~   84 (240)
T d1ji0a_           6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV-RAQKGKIIFNGQDITNKPAHVINRMGIA   84 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred             EEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEecccccccccHHHHHHhccc
Confidence            4677787777764     459999999999999999999999999999999 899999999999984311     01111


Q ss_pred             CCccc--------H--------------HHHHHHHHHHHHHHH--hCCcchhcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675          151 FKAED--------R--------------VENIRRIGEVAKLFA--DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVF  205 (279)
Q Consensus       151 ~~~~~--------~--------------~~~~~~v~~~~~~~~--~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~  205 (279)
                      |.+++        .              ....+.+......+.  .......+..+|++++|| .++++++.+|++  ++
T Consensus        85 ~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~l--Ll  162 (240)
T d1ji0a_          85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL--LM  162 (240)
T ss_dssp             EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE--EE
T ss_pred             ccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE--ee
Confidence            11110        0              011111222222211  112223456789999999 999999999999  99


Q ss_pred             EeCCccchhccChhhHHHH
Q 023675          206 MDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       206 ld~p~~~l~~R~~~~l~~~  224 (279)
                      ||||+..++......+++.
T Consensus       163 lDEPt~gLD~~~~~~i~~~  181 (240)
T d1ji0a_         163 MDEPSLGLAPILVSEVFEV  181 (240)
T ss_dssp             EECTTTTCCHHHHHHHHHH
T ss_pred             ecCCCcCCCHHHHHHHHHH
Confidence            9999999999888775543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.81  E-value=2.2e-20  Score=155.82  Aligned_cols=140  Identities=19%  Similarity=0.208  Sum_probs=99.2

Q ss_pred             CeEEeecceeecC----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc------ccCCC
Q 023675           81 NILWHKNSVDKRD----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLS  150 (279)
Q Consensus        81 ~i~~~~~~~~~~~----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~------~~~~~  150 (279)
                      .|+++|++++|..    +.||++++|++++|+||||||||||+++|+|++ .|.+|.|.++|.++.+..      .....
T Consensus         2 ~lev~~ls~~y~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~-~p~~G~I~~~g~~i~~~~~~i~~~~~~~~   80 (200)
T d1sgwa_           2 KLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVPITKVKGKIFFLPEEII   80 (200)
T ss_dssp             EEEEEEEEEESSSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGGGGGGGEEEECSSCC
T ss_pred             eEEEEEEEEEeCCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc-ccCCCEEEECCEehhHhcCcEEEEeeccc
Confidence            3788999999954    339999999999999999999999999999999 999999999999885321      01111


Q ss_pred             ----CCcccHHHHHHHH-------HHHHHHHHhCC---cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675          151 ----FKAEDRVENIRRI-------GEVAKLFADAG---VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (279)
Q Consensus       151 ----~~~~~~~~~~~~v-------~~~~~~~~~~~---~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~  215 (279)
                          +...+.......+       .++...+...+   +......+|+++++| .++++++.+|++  ++||||+..++.
T Consensus        81 ~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~l--lllDEPt~gLD~  158 (200)
T d1sgwa_          81 VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI--YVLDDPVVAIDE  158 (200)
T ss_dssp             CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE--EEEESTTTTSCT
T ss_pred             CCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCE--EEEcCcccccCH
Confidence                1111111111000       11222222222   222345688999999 999999999999  999999999999


Q ss_pred             cChhhHHH
Q 023675          216 RDPKGLYK  223 (279)
Q Consensus       216 R~~~~l~~  223 (279)
                      .....+++
T Consensus       159 ~~~~~i~~  166 (200)
T d1sgwa_         159 DSKHKVLK  166 (200)
T ss_dssp             TTHHHHHH
T ss_pred             HHHHHHHH
Confidence            88766543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.80  E-value=2.5e-20  Score=161.08  Aligned_cols=141  Identities=21%  Similarity=0.203  Sum_probs=99.4

Q ss_pred             CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc----------
Q 023675           81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----------  145 (279)
Q Consensus        81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~----------  145 (279)
                      .|+++|++++|.+     +.||++++|++++|+|+||||||||+++|+|++ .|++|.|+++|.++....          
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~~~~   80 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGAIIVNGQNINLVRDKDGQLKVAD   80 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCc-cCCCCCEEECCEEeccCCccchhccccc
Confidence            3677788777764     449999999999999999999999999999999 899999999999874210          


Q ss_pred             -------ccCCCCCcc--------cHHHHHH-------------HHHHHHHHHHhCCcch-----hcccCChHHHHH-HH
Q 023675          146 -------NRDLSFKAE--------DRVENIR-------------RIGEVAKLFADAGVIC-----IACLISPYRKDR-DA  191 (279)
Q Consensus       146 -------~~~~~~~~~--------~~~~~~~-------------~v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~~  191 (279)
                             ...+++.++        ...+.+.             ........+...++..     ....+|++++|| .+
T Consensus        81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~i  160 (258)
T d1b0ua_          81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  160 (258)
T ss_dssp             HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred             HhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHH
Confidence                   001111111        0011100             0011222333334322     345689999999 99


Q ss_pred             HHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       192 ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      ||+++.+|++  +++|||+..++......+++.
T Consensus       161 AraL~~~P~l--lilDEPT~gLD~~~~~~i~~l  191 (258)
T d1b0ua_         161 ARALAMEPDV--LLFDEPTSALDPELVGEVLRI  191 (258)
T ss_dssp             HHHHHTCCSE--EEEESTTTTSCHHHHHHHHHH
T ss_pred             HHHHhcCCCE--EEeccccccCCHHHHHHHHHh
Confidence            9999999998  999999999999887765543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1.1e-19  Score=155.25  Aligned_cols=140  Identities=16%  Similarity=0.177  Sum_probs=98.7

Q ss_pred             CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCC
Q 023675           81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFK  152 (279)
Q Consensus        81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~  152 (279)
                      .|+++|++.+|.++     .||++++|++++|+||||||||||+++|+|++ .|++|.|.++|.++.+.   ....++|.
T Consensus         2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~-~p~~G~i~i~G~~i~~~~~~~~~~i~~v   80 (238)
T d1vpla_           2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI-KPSSGIVTVFGKNVVEEPHEVRKLISYL   80 (238)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred             CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECcEecccChHHHHhhEeEe
Confidence            46777887777754     49999999999999999999999999999999 89999999999987432   11112222


Q ss_pred             ccc--------HHHHHHH-----------HHH-HHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675          153 AED--------RVENIRR-----------IGE-VAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMD  207 (279)
Q Consensus       153 ~~~--------~~~~~~~-----------v~~-~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld  207 (279)
                      ++.        ..+++..           +.+ +..++...++.    ..+..+|+++++| .++++++.+|++  ++||
T Consensus        81 pq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~i--llLD  158 (238)
T d1vpla_          81 PEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL--AILD  158 (238)
T ss_dssp             CTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE--EEEE
T ss_pred             eeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCE--EEec
Confidence            221        1111110           000 11111112221    2355688999998 999999999999  9999


Q ss_pred             CCccchhccChhhHHH
Q 023675          208 VPLQVCEARDPKGLYK  223 (279)
Q Consensus       208 ~p~~~l~~R~~~~l~~  223 (279)
                      ||+..++......+++
T Consensus       159 EPt~gLD~~~~~~i~~  174 (238)
T d1vpla_         159 EPTSGLDVLNAREVRK  174 (238)
T ss_dssp             STTTTCCHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHH
Confidence            9999999887666544

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.9e-19  Score=145.10  Aligned_cols=175  Identities=54%  Similarity=0.935  Sum_probs=106.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC  180 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~  180 (279)
                      +|.+|+|+|+|||||||+++.|+..+..+..-...++++..+........+.......+..+...........+......
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS   97 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            68999999999999999999999998766666677888877766655666666666666655555555555556555555


Q ss_pred             cCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCC
Q 023675          181 LISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCP  258 (279)
Q Consensus       181 ~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~  258 (279)
                      ........+...+.+....  .+..+.+.++.....++..++............+......|+.|..++++|||   +..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~dl~IdT---~~~  174 (195)
T d1x6va3          98 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKT---DSC  174 (195)
T ss_dssp             CCCCCHHHHHHHHHHHHTTTCCEEEEEECC------------------------------CCCCCSSCSEEECT---TTS
T ss_pred             cccchHHHHHHHHHHHhccccccccccchhheeeehhhccchhhhhhhhhhhhhhhhhccccCCCCCCCEEEEC---CCC
Confidence            4443334443344333322  33345666666666666655554444445555666777888888889999999   889


Q ss_pred             CHHHHHHHHHHHHHhCCCcc
Q 023675          259 SPADMVETVVSYLDENGFLR  278 (279)
Q Consensus       259 ~~~e~~~~Il~~l~~~~~~~  278 (279)
                      ++++++++|+++|+++|+++
T Consensus       175 s~ee~~~~Il~~l~~~~~i~  194 (195)
T d1x6va3         175 DVNDCVQQVVELLQERDIVP  194 (195)
T ss_dssp             CHHHHHHHHHHHHHHTTSSC
T ss_pred             CHHHHHHHHHHHHHHCcCCC
Confidence            99999999999999999885

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.78  E-value=5.4e-19  Score=152.47  Aligned_cols=140  Identities=16%  Similarity=0.154  Sum_probs=98.4

Q ss_pred             eEEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-----ccCCCC
Q 023675           82 ILWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSF  151 (279)
Q Consensus        82 i~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-----~~~~~~  151 (279)
                      ++++|++.+|.     ++.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...-     ...+++
T Consensus         5 L~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~gi~~   83 (254)
T d1g6ha_           5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KADEGRVYFENKDITNKEPAELYHYGIVR   83 (254)
T ss_dssp             EEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred             EEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCC-cCCCcEEEECCEeccchhHHHHHHhcCCc
Confidence            55666666664     4569999999999999999999999999999999 899999999999984211     111222


Q ss_pred             CcccH--------HHHH-------------------------HHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHH
Q 023675          152 KAEDR--------VENI-------------------------RRIGEVAKLFADAGVI----CIACLISPYRKDR-DACR  193 (279)
Q Consensus       152 ~~~~~--------~~~~-------------------------~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar  193 (279)
                      .+++.        .+.+                         ........++...++.    ..+..+|++++|| .++|
T Consensus        84 v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAr  163 (254)
T d1g6ha_          84 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGR  163 (254)
T ss_dssp             CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred             cCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHH
Confidence            22111        0100                         0011112222222222    2355689999999 9999


Q ss_pred             HhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675          194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKL  224 (279)
Q Consensus       194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~  224 (279)
                      +++.+|++  ++||||+..++......+++.
T Consensus       164 aL~~~P~l--lilDEPt~gLD~~~~~~i~~~  192 (254)
T d1g6ha_         164 ALMTNPKM--IVMDEPIAGVAPGLAHDIFNH  192 (254)
T ss_dssp             HHHTCCSE--EEEESTTTTCCHHHHHHHHHH
T ss_pred             HHHhCcCc--hhhcCCcccCCHHHHHHHHHH
Confidence            99999998  999999999999887776554

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.76  E-value=4.6e-18  Score=136.83  Aligned_cols=178  Identities=38%  Similarity=0.656  Sum_probs=115.9

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCC-ccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcch
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC  177 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  177 (279)
                      -.+|.+|+|+|+|||||||++++|+..|+... ....+++.+..+...........+.......................
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV   82 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhhccccccchhHHHHHHHHHHHHHHhhhhhccccee
Confidence            46899999999999999999999999985332 22344555544433332333333333333333333333333333333


Q ss_pred             hcccCChHH-HHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCC
Q 023675          178 IACLISPYR-KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDD  256 (279)
Q Consensus       178 i~~~~~~~~-~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~  256 (279)
                      ......... ..............++.++++.+......|...........+....+......|+.|..++++|||   +
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~IDT---~  159 (183)
T d1m8pa3          83 IAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDF---S  159 (183)
T ss_dssp             EEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECT---T
T ss_pred             ecccchhhhHHHHHHHHhhcccchhhhhhHHHHHHHHHhhhhhhcccchhhchhhhhhhhcccccCCCCCcEEEEC---C
Confidence            222222222 222222222223245567888888888888777777777777777788888888888889999999   8


Q ss_pred             CCCHHHHHHHHHHHHHhCCCccC
Q 023675          257 CPSPADMVETVVSYLDENGFLRA  279 (279)
Q Consensus       257 ~~~~~e~~~~Il~~l~~~~~~~~  279 (279)
                      ..++++++++|+++|+.+|+++.
T Consensus       160 ~~s~~e~v~~I~~~L~~~g~~~~  182 (183)
T d1m8pa3         160 KQSVRSIVHEIILVLESQGFLER  182 (183)
T ss_dssp             TSCHHHHHHHHHHHHHHTTTTCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCC
Confidence            89999999999999999999874

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.76  E-value=2.5e-18  Score=146.23  Aligned_cols=132  Identities=17%  Similarity=0.228  Sum_probs=94.1

Q ss_pred             EeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCccc------
Q 023675           84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAED------  155 (279)
Q Consensus        84 ~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~~------  155 (279)
                      .+...|..  +.||++. +++++|+||||||||||+++|+|++ .|++|.|+++|.++...  ....++|.+++      
T Consensus         9 k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~-~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~   84 (240)
T d2onka1           9 KRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIV-KPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPH   84 (240)
T ss_dssp             EEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTT
T ss_pred             EEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCC-CCCceEEEECCEECCcCCHHHcCceeeccchhhccc
Confidence            33344443  4678885 5899999999999999999999999 89999999999988532  11223333321      


Q ss_pred             ---------------HHHHHHHHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675          156 ---------------RVENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA  215 (279)
Q Consensus       156 ---------------~~~~~~~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~  215 (279)
                                     ..+..+++.   .++...++..    ....+|+++++| .+||+++.+|++  ++||||+..++.
T Consensus        85 ltV~enl~~~l~~~~~~~~~~~v~---~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~i--lllDEPts~LD~  159 (240)
T d2onka1          85 LSVYRNIAYGLRNVERVERDRRVR---EMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL--LLLDEPLSAVDL  159 (240)
T ss_dssp             SCHHHHHHTTCTTSCHHHHHHHHH---HHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS--BEEESTTSSCCH
T ss_pred             chhhHhhhhhhcccCHHHHHHHHH---HHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCc--eEecCccccCCH
Confidence                           111112222   2333333332    455689999999 999999999999  999999999999


Q ss_pred             cChhhHHHH
Q 023675          216 RDPKGLYKL  224 (279)
Q Consensus       216 R~~~~l~~~  224 (279)
                      .....+.+.
T Consensus       160 ~~~~~i~~~  168 (240)
T d2onka1         160 KTKGVLMEE  168 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988775543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=8.3e-18  Score=146.90  Aligned_cols=142  Identities=15%  Similarity=0.161  Sum_probs=91.2

Q ss_pred             CCeEEeecceee---cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc----ccc-----cc
Q 023675           80 TNILWHKNSVDK---RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----HGL-----NR  147 (279)
Q Consensus        80 ~~i~~~~~~~~~---~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~----~~~-----~~  147 (279)
                      .+++|.++++.+   ..+.||++++|++++|+|+||||||||+++|+|++ .|++|.|.++|..-.    ..+     ..
T Consensus        37 ~~i~~~~~~~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~-~p~~G~I~~~g~i~~v~Q~~~l~~~tv~e  115 (281)
T d1r0wa_          37 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL-EASEGIIKHSGRVSFCSQFSWIMPGTIKE  115 (281)
T ss_dssp             ---CHHHHHHTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS-CCSEEEEECCSCEEEECSSCCCCSEEHHH
T ss_pred             CcEEEEEcCCCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-cCCCcEEEECCEEEEEeccccccCceeec
Confidence            456666655433   24559999999999999999999999999999999 899999999995310    000     00


Q ss_pred             CCCCCcccHHHHHHHHHHHH---HHHHhC--Ccc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675          148 DLSFKAEDRVENIRRIGEVA---KLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD  217 (279)
Q Consensus       148 ~~~~~~~~~~~~~~~v~~~~---~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~  217 (279)
                      .+.+........+..+...+   ..+...  +..    ..+..+|+++++| .+||+++.+|++  ++||||++.++...
T Consensus       116 ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i--llLDEPts~LD~~~  193 (281)
T d1r0wa_         116 NIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL--YLLDSPFGYLDVFT  193 (281)
T ss_dssp             HHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE--EEEESCCCSSCHHH
T ss_pred             cccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccc--hhhcCccccCCHHH
Confidence            11111110011111111111   111111  111    1223489999999 999999999998  99999999999877


Q ss_pred             hhhHHHH
Q 023675          218 PKGLYKL  224 (279)
Q Consensus       218 ~~~l~~~  224 (279)
                      ...+++.
T Consensus       194 ~~~i~~~  200 (281)
T d1r0wa_         194 EEQVFES  200 (281)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.7e-17  Score=139.82  Aligned_cols=137  Identities=18%  Similarity=0.198  Sum_probs=91.0

Q ss_pred             eEEeecceeec-CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-----------ccC-
Q 023675           82 ILWHKNSVDKR-DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----------NRD-  148 (279)
Q Consensus        82 i~~~~~~~~~~-~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-----------~~~-  148 (279)
                      ++++|+..+|. +..||++++|++++|+|+||||||||+++|+|+.  +++|.|.++|.++....           ... 
T Consensus         4 l~~~dv~~~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~--~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~   81 (231)
T d1l7vc_           4 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQ   81 (231)
T ss_dssp             EEEEEECCTTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC--CCSSEEEESSSBGGGSCHHHHHHHEEEECSCC
T ss_pred             EEEECcccCceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCceEEEECCEECCcCCHHHHHhhceeeeccc
Confidence            56777766553 4569999999999999999999999999999964  58999999999874321           000 


Q ss_pred             -CCCCcccHHHH----------HHHHHHHHHHHHhC-CcchhcccCChHHHHH-HHHHHhCC-------CCCccEEEEeC
Q 023675          149 -LSFKAEDRVEN----------IRRIGEVAKLFADA-GVICIACLISPYRKDR-DACRSMLP-------EGDFIEVFMDV  208 (279)
Q Consensus       149 -~~~~~~~~~~~----------~~~v~~~~~~~~~~-~~~~i~~~~~~~~~~r-~~ar~l~~-------~~~~i~i~ld~  208 (279)
                       ..+... ....          .+.+.++...+.-. -....+..+|++++|| .++++++.       +|++  ++|||
T Consensus        82 ~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~l--lllDE  158 (231)
T d1l7vc_          82 TPPFATP-VWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL--LLLDE  158 (231)
T ss_dssp             CCCSSCB-HHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE--EEESS
T ss_pred             cCCcccc-HHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCE--EEEcC
Confidence             011110 0000          11122222221111 1112345689999999 88998875       4577  99999


Q ss_pred             CccchhccChhhHHH
Q 023675          209 PLQVCEARDPKGLYK  223 (279)
Q Consensus       209 p~~~l~~R~~~~l~~  223 (279)
                      |+..++......+++
T Consensus       159 Pt~gLD~~~~~~i~~  173 (231)
T d1l7vc_         159 PMNSLDVAQQSALDK  173 (231)
T ss_dssp             CSTTCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            999999887766544

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=9e-15  Score=110.17  Aligned_cols=117  Identities=17%  Similarity=0.229  Sum_probs=90.8

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccC--CccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVI  176 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~--~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  176 (279)
                      -++|.++++.|.+||||||++++|.-.|...  ++..-++|||+++                   ++..++..+...|  
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~-------------------ri~fva~e~~k~G--   61 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKT-------------------ELLSLIQDFIGSG--   61 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCH-------------------HHHTTHHHHHHTT--
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHH-------------------HHHHHHHHHHhcC--
Confidence            4689999999999999999999997666453  3445568888774                   3344444444322  


Q ss_pred             hhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCC
Q 023675          177 CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDD  256 (279)
Q Consensus       177 ~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~  256 (279)
                                             .++.+....|.+.|.+|.++++|                .|+.|..||+++++   +
T Consensus        62 -----------------------~~~iv~~~~p~e~~~~~d~~g~y----------------~~~~~~npDLvIdT---~   99 (122)
T d1g8fa3          62 -----------------------SGLIIPDQWEDDKDSVVGKQNVY----------------LLDTSSSADIQLES---A   99 (122)
T ss_dssp             -----------------------CEEEESSCCCGGGGGGSCCTTEE----------------EEESSTTCSEECSS---T
T ss_pred             -----------------------CEEEEecCCcHHHHHhcCCCCeE----------------EecCCCCCCeEEEC---C
Confidence                                   35556778888999999876654                36778889999999   8


Q ss_pred             CCCHHHHHHHHHHHHHhCCCcc
Q 023675          257 CPSPADMVETVVSYLDENGFLR  278 (279)
Q Consensus       257 ~~~~~e~~~~Il~~l~~~~~~~  278 (279)
                      ..++++++++|+.+|+++|+++
T Consensus       100 ~~sVee~V~qII~yLee~GfIk  121 (122)
T d1g8fa3         100 DEPISHIVQKVVLFLEDNGFFV  121 (122)
T ss_dssp             TCCHHHHHHHHHHHHHHTTSCC
T ss_pred             CCCHHHHHHHHHHHHHHCcCEe
Confidence            8999999999999999999985

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.50  E-value=2.9e-14  Score=113.84  Aligned_cols=157  Identities=17%  Similarity=0.118  Sum_probs=92.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-------------ccCCCCCcccHHHH-HHHHHHHH
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------------NRDLSFKAEDRVEN-IRRIGEVA  167 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-------------~~~~~~~~~~~~~~-~~~v~~~~  167 (279)
                      .++|+|+|+|||||||+++.|++.++.+   .+.+++|.+....             .....+.......+ ++......
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEP---WLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSC---EEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCC---eEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHH
Confidence            5689999999999999999999998533   4556665543211             11111111112122 22233334


Q ss_pred             HHHHhCCcchhccc-CChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccc-cCcCCCCCC
Q 023675          168 KLFADAGVICIACL-ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGI-DDPYEPPLN  245 (279)
Q Consensus       168 ~~~~~~~~~~i~~~-~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~-r~~~~~~~~  245 (279)
                      ..+...+...+... .......+...........+..+++++|.+.+.+|..      .+.++...+... ...++.+..
T Consensus        80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~------~R~~~~~~~~~~~~~~~~~~~~  153 (178)
T d1qhxa_          80 VAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRET------ARGDRVAGMAAKQAYVVHEGVE  153 (178)
T ss_dssp             HHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHH------HTSSSCTTHHHHHTTGGGTTCC
T ss_pred             HHHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHH------hcCCcchhhhhhhhhhhhcCCC
Confidence            44444444433322 2222333344444444556667999999999998873      333443332222 233445556


Q ss_pred             CceEEEccCCCCCCHHHHHHHHHHH
Q 023675          246 CEIVLKQMGDDCPSPADMVETVVSY  270 (279)
Q Consensus       246 a~~~i~~~~~~~~~~~e~~~~Il~~  270 (279)
                      ++++|||   +..++++++++|+++
T Consensus       154 ~dl~IDt---s~~s~ee~a~~I~~~  175 (178)
T d1qhxa_         154 YDVEVDT---THKESIECAWAIAAH  175 (178)
T ss_dssp             CSEEEET---TSSCHHHHHHHHHTT
T ss_pred             CCEEEEC---CCCCHHHHHHHHHHh
Confidence            7899999   899999999999865

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=8.8e-14  Score=110.88  Aligned_cols=157  Identities=18%  Similarity=0.257  Sum_probs=93.7

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-----ccCCCCCcccHHHHHHHHHHHHHHHHhC
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVENIRRIGEVAKLFADA  173 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~  173 (279)
                      .+.+.+++|+|+|||||||+++.|++.++.+     +++.+.+....     .....+...........+..........
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~~~-----~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAA-----FLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRT   77 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHTCE-----EEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCC-----eechhhhhHHHHhhhhccCcceehhhhHHHHHHHHHHHHHHHhc
Confidence            4578999999999999999999999998533     66776664221     1122233333334444444444333333


Q ss_pred             CcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCc-------cccCcCCCCCCC
Q 023675          174 GVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFT-------GIDDPYEPPLNC  246 (279)
Q Consensus       174 ~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~-------~~r~~~~~~~~a  246 (279)
                      +......+.......++.++....  .++.++|++|.+.+.+|+.++      .++.....       ....+++.. ..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~l~~~~e~~~~Rl~~R------~~~~~~~~~~~~~~~~~e~~~~~e-~~  148 (171)
T d1knqa_          78 NKVSLIVCSALKKHYRDLLREGNP--NLSFIYLKGDFDVIESRLKAR------KGHFFKTQMLVTQFETLQEPGADE-TD  148 (171)
T ss_dssp             CSEEEEECCCCSHHHHHHHHTTCT--TEEEEEEECCHHHHHHHHHTS------TTCCCCHHHHHHHHHHCCCCCTTC-TT
T ss_pred             cCceEeeccchHHHHHHHHHHhCC--CceEEeecCCHHHHHHHHHhC------cCCCccHHHHHhhHHHhhCCCccc-CC
Confidence            444444444444556666665544  455689999999999998543      11111100       011222221 12


Q ss_pred             ceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          247 EIVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       247 ~~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                      .++||.    +.++++++++|++.|++
T Consensus       149 ~~~id~----~~~~e~v~~~i~~~lk~  171 (171)
T d1knqa_         149 VLVVDI----DQPLEGVVASTIEVIKK  171 (171)
T ss_dssp             EEEEEC----SSCHHHHHHHHHHHHHC
T ss_pred             EEEEeC----CCCHHHHHHHHHHHhcC
Confidence            355554    57899999999999874

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.36  E-value=2.7e-13  Score=108.27  Aligned_cols=157  Identities=15%  Similarity=0.123  Sum_probs=92.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccC-----CCCCcccHHHHHHHHHHHHHHHHhCCc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKAEDRVENIRRIGEVAKLFADAGV  175 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~  175 (279)
                      .|++|+|+|+|||||||+++.|++.++.+   .+.+++|+++..+...     ...........+.........+...+.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVP---KVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGY   79 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSC---EEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCC---EEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            58999999999999999999999988543   6788998876543321     111122222333333333444444444


Q ss_pred             chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCC-------CccccCcCCCCCCCce
Q 023675          176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG-------FTGIDDPYEPPLNCEI  248 (279)
Q Consensus       176 ~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~-------~~~~r~~~~~~~~a~~  248 (279)
                      .++...... ...+...+..  ...+..++++++.+.+.+|+.++      ......       +......++.+  ++.
T Consensus        80 ~vi~~~~~~-~~~~~~~~~~--~~~~~~i~l~~~~e~~~~R~~~R------~~~~~~~~~~~~~~~~~~~~~~~~--~~~  148 (176)
T d1zp6a1          80 FVILDGVVR-PDWLPAFTAL--ARPLHYIVLRTTAAEAIERCLDR------GGDSLSDPLVVADLHSQFADLGAF--EHH  148 (176)
T ss_dssp             EEEECSCCC-TTTTHHHHTT--CSCEEEEEEECCHHHHHHHHHTT------CTTSCCCHHHHHHHHHHTTCCGGG--GGG
T ss_pred             CeEeccccc-HHHHHHHHhc--ccccccccCCCCHHHHHHHHHhC------CCccccchhhHHHHHHHHhhcccc--cCE
Confidence            443333221 1122222222  22345589999999999887543      111110       01111222333  457


Q ss_pred             EEEccCCCCCCHHHHHHHHHHHHHhC
Q 023675          249 VLKQMGDDCPSPADMVETVVSYLDEN  274 (279)
Q Consensus       249 ~i~~~~~~~~~~~e~~~~Il~~l~~~  274 (279)
                      +|||   ++.++++++++|++.|+..
T Consensus       149 ~idt---~~~~~ee~~~~I~~~l~~~  171 (176)
T d1zp6a1         149 VLPV---SGKDTDQALQSAINALQSG  171 (176)
T ss_dssp             EEEC---TTCCTTTTTTTTHHHHHHT
T ss_pred             EEEC---CCCCHHHHHHHHHHHHHcC
Confidence            8999   8899999999999999864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.35  E-value=5.7e-15  Score=118.17  Aligned_cols=150  Identities=21%  Similarity=0.205  Sum_probs=82.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHH-HHHHHHHHhCCcch
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEVAKLFADAGVIC  177 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v-~~~~~~~~~~~~~~  177 (279)
                      .|+|+|++||||||+++.|+..|+.+     ++|.|.+-...   .+.+....     ...++.. ..+...+......+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~-----~~d~d~~ie~~---~g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v   73 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLV-----FLDSDFLIEQK---FNQKVSEIFEQKRENFFREQEQKMADFFSSCEKAC   73 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHH---HTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC-----EEecCchhhhH---HhhhhhhHHHhhhhccchhhhhhhchhhhhccccc
Confidence            37899999999999999999999655     88987652110   01111111     1111121 22222222322222


Q ss_pred             hcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHH---Hh-CCCCCCCccccCcCCCCCCCceEEEcc
Q 023675          178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL---AR-EGKVKGFTGIDDPYEPPLNCEIVLKQM  253 (279)
Q Consensus       178 i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~---~~-~~~~~~~~~~r~~~~~~~~a~~~i~~~  253 (279)
                      +......  ..+    ..+.... +.|||++|++.+.+|+.++-...   .. ...+..+...|.++|+. .++++|++ 
T Consensus        74 ~~~~g~~--~~~----~~l~~~~-~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~~r~~~Y~~-~ad~~Idt-  144 (161)
T d1viaa_          74 IATGGGF--VNV----SNLEKAG-FCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQ-KANFILNI-  144 (161)
T ss_dssp             EECCTTG--GGS----TTGGGGC-EEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHH-HCSEEEEC-
T ss_pred             cccccch--hhH----HHHHhCC-eEEEeccchHHHHHHHccccccccccccCchHHHHHHHHHHHHHHh-hCCEEEEC-
Confidence            2211111  111    1122223 34999999999999975331000   00 00011222345555543 27899999 


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 023675          254 GDDCPSPADMVETVVSYLD  272 (279)
Q Consensus       254 ~~~~~~~~e~~~~Il~~l~  272 (279)
                        +..++++++++|++.|+
T Consensus       145 --~~~s~eei~~~I~~~i~  161 (161)
T d1viaa_         145 --ENKNIDELLSEIKKVIK  161 (161)
T ss_dssp             --TTCCHHHHHHHHHHHHC
T ss_pred             --CCCCHHHHHHHHHHHhC
Confidence              88999999999998874

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.34  E-value=8.9e-13  Score=104.48  Aligned_cols=164  Identities=15%  Similarity=0.106  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH---HHHHHHHHHHHHHHHhCCcchhc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR---VENIRRIGEVAKLFADAGVICIA  179 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~i~  179 (279)
                      .+|+|+|++||||||+++.|++.+.    +.+++++|.++..+...........   ......+......+...+...++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii   78 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD----NSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVL   78 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS----SEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC----CCEEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            5799999999999999999999883    3567888887654433222222221   12222233333333445555555


Q ss_pred             ccCChHHHHH---HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCC-CCCCCceEEEccCC
Q 023675          180 CLISPYRKDR---DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYE-PPLNCEIVLKQMGD  255 (279)
Q Consensus       180 ~~~~~~~~~r---~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~-~~~~a~~~i~~~~~  255 (279)
                      .........+   ...........+..++++++.+.+.+|+..+-....   ...........++ ......++|++   
T Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~---~~~~~~~~~~~~~~~~~~~~~~id~---  152 (176)
T d2bdta1          79 DYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQ---MGERCLELVEEFESKGIDERYFYNT---  152 (176)
T ss_dssp             ESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHHHHHHHHTTCCTTSEEEC---
T ss_pred             ccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchh---hhHHHHHHHHHHHhCCCCCeEEEEC---
Confidence            4433332223   233344444455568999999999999865411100   0011111111111 22234578898   


Q ss_pred             CCCCHHHHHHHHHHHHHhCCC
Q 023675          256 DCPSPADMVETVVSYLDENGF  276 (279)
Q Consensus       256 ~~~~~~e~~~~Il~~l~~~~~  276 (279)
                      +..+++++.+.|.+.+....+
T Consensus       153 ~~~~~~~~~~~I~~i~~~~r~  173 (176)
T d2bdta1         153 SHLQPTNLNDIVKNLKTNPRF  173 (176)
T ss_dssp             SSSCGGGHHHHHHHHHHCGGG
T ss_pred             CCCCHHHHHHHHHHHHhcCCe
Confidence            888999998888888776544

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.33  E-value=2.1e-14  Score=115.50  Aligned_cols=152  Identities=17%  Similarity=0.204  Sum_probs=83.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHH-HHHHHHHHH-hCCc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRR-IGEVAKLFA-DAGV  175 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~-v~~~~~~~~-~~~~  175 (279)
                      +.|+|+|++||||||+++.|+..|+.+     ++|+|++....   .+.+..+.     ...+.. ..+...... ....
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~-----~id~D~~ie~~---~g~~i~ei~~~~g~~~~~~~~~~~l~~~~~~~~~   74 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYE-----FVDTDIFMQHT---SGMTVADVVAAEGWPGFRRRESEALQAVATPNRV   74 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHH---HCSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSEE
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCC-----EEehhhhhhhh---hhhhhhhhhcccchHHHHHHHHHHHHhhccccce
Confidence            457899999999999999999999766     89998763211   12221111     111111 111111111 1222


Q ss_pred             chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHH--------HHhCCCCCCCccccCcCCCCCCCc
Q 023675          176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK--------LAREGKVKGFTGIDDPYEPPLNCE  247 (279)
Q Consensus       176 ~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~--------~~~~~~~~~~~~~r~~~~~~~~a~  247 (279)
                      ...++........++..+..     ...|||++|.+.+.+|+..+...        ......+..+...|.++|... ++
T Consensus        75 ~~~~~~~~~~~~~~~~l~~~-----~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~lY~~~-a~  148 (170)
T d1e6ca_          75 VATGGGMVLLEQNRQFMRAH-----GTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDV-AH  148 (170)
T ss_dssp             EECCTTGGGSHHHHHHHHHH-----SEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHH-CS
T ss_pred             ecccccchhhhHHHHhhhcc-----ceeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHc-CC
Confidence            22222222334445544431     23489999999999987432100        000001112233355665432 67


Q ss_pred             eEEEccCCCCCCHHHHHHHHHHHHH
Q 023675          248 IVLKQMGDDCPSPADMVETVVSYLD  272 (279)
Q Consensus       248 ~~i~~~~~~~~~~~e~~~~Il~~l~  272 (279)
                      ++|++   + .++++++++|++.|+
T Consensus       149 ~~Id~---~-~~~~eiv~~Ii~~Lr  169 (170)
T d1e6ca_         149 YVVDA---T-QPPAAIVCELMQTMR  169 (170)
T ss_dssp             EEEET---T-SCHHHHHHHHHHHTT
T ss_pred             EEEcC---C-CCHHHHHHHHHHHcC
Confidence            88887   4 689999999998774

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=1.5e-14  Score=115.83  Aligned_cols=150  Identities=21%  Similarity=0.201  Sum_probs=81.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH------HHHHHHHHH-HHHHHHhCCcch
Q 023675          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR------VENIRRIGE-VAKLFADAGVIC  177 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~------~~~~~~v~~-~~~~~~~~~~~~  177 (279)
                      |+|+|++||||||+++.|+..|+.+     ++|.|..-...   .+.+..+.      ..+.+...+ +..+........
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~-----fiD~D~~ie~~---~g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi   75 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQR---TGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVL   75 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHH---HSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCC-----eEeeccchhhh---hhhhhhhhhhhhhHHHHHHHHhhhhhhccccccccc
Confidence            5677999999999999999999776     88887642110   02222111      111111111 222222222222


Q ss_pred             hcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh----HHH-HHhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675          178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG----LYK-LAREGKVKGFTGIDDPYEPPLNCEIVLKQ  252 (279)
Q Consensus       178 i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~----l~~-~~~~~~~~~~~~~r~~~~~~~~a~~~i~~  252 (279)
                      ..+.....   .+..+.++.+.  ..|||+++.+.+.+|+.++    ++. ......+..+...|.++|.. .++++||+
T Consensus        76 ~~gg~~~~---~~~~~~~l~~~--~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~eR~~~Y~~-~ad~~Idt  149 (165)
T d2iyva1          76 SLGGGAVT---SPGVRAALAGH--TVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRR-VATMRVDT  149 (165)
T ss_dssp             ECCTTGGG---SHHHHHHHTTS--CEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHH-HCSEEEEC
T ss_pred             cccccccc---ccccccccccc--ceeeeeccchhhhhcccccccchhccCccHHHHHHHHHHHHHHHHHh-hCCEEEEC
Confidence            22222111   12233344443  3389999999999987432    000 00000111223335555543 27899999


Q ss_pred             cCCCCCCHHHHHHHHHHHH
Q 023675          253 MGDDCPSPADMVETVVSYL  271 (279)
Q Consensus       253 ~~~~~~~~~e~~~~Il~~l  271 (279)
                         +..++++++++|++.|
T Consensus       150 ---~~~s~~ei~~~Ii~~L  165 (165)
T d2iyva1         150 ---NRRNPGAVVRHILSRL  165 (165)
T ss_dssp             ---SSSCHHHHHHHHHTTS
T ss_pred             ---CCCCHHHHHHHHHhcC
Confidence               8899999999998753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=9.5e-13  Score=103.17  Aligned_cols=152  Identities=16%  Similarity=0.163  Sum_probs=70.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHHHHHHHHHHhCCcchh
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRIGEVAKLFADAGVICI  178 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~i  178 (279)
                      .|+|+|++||||||+++.|+..|+.+     ++|.+.......   +......     .....................+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~-----~id~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNME-----FYDSDQEIEKRT---GADVGWVFDLEGEEGFRDREEKVINELTEKQGIV   75 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCE-----EEEHHHHHHHHH---TSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC-----eEeechhHHhhh---cccccchhhhhhhhHHHHHHHHHHHhhccccceE
Confidence            58999999999999999999999654     677765532111   1111111     1111111111111111111111


Q ss_pred             ccc--CC-hHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCC------CccccCcCCCCCCCceE
Q 023675          179 ACL--IS-PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG------FTGIDDPYEPPLNCEIV  249 (279)
Q Consensus       179 ~~~--~~-~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~------~~~~r~~~~~~~~a~~~  249 (279)
                      ...  .. ...........     ..+.++++.++..+..|..++-...........      ....+.++|.. .++++
T Consensus        76 ~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~d~~  149 (169)
T d1kaga_          76 LATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEE-IADVT  149 (169)
T ss_dssp             EECCTTGGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHH-HCSEE
T ss_pred             eeccchhhhhhhhhHHhhh-----cceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHhhhhhhc-cCCEE
Confidence            111  11 11111122221     123478888888888887543111000000000      01113333332 26799


Q ss_pred             EEccCCCCCCHHHHHHHHHHHHH
Q 023675          250 LKQMGDDCPSPADMVETVVSYLD  272 (279)
Q Consensus       250 i~~~~~~~~~~~e~~~~Il~~l~  272 (279)
                      |+|   +..++++++++|++.|+
T Consensus       150 Idt---~~~s~ee~v~~Ii~~le  169 (169)
T d1kaga_         150 IRT---DDQSAKVVANQIIHMLE  169 (169)
T ss_dssp             C--------CHHHHHHHHHHHHC
T ss_pred             EEC---CCCCHHHHHHHHHHHhC
Confidence            999   88999999999999874

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=1.5e-10  Score=93.08  Aligned_cols=104  Identities=13%  Similarity=0.035  Sum_probs=72.1

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV  175 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  175 (279)
                      .+.-+++.+|.++|++||||||+++.|+..+     |.++++.|+++..                ..+..........+.
T Consensus         8 ~~~~~~p~liil~G~pGsGKST~a~~l~~~~-----~~~~i~~D~~~~~----------------~~~~~~~~~~l~~g~   66 (172)
T d1yj5a2           8 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLGSW----------------QRCVSSCQAALRQGK   66 (172)
T ss_dssp             CSSCSSCCEEEEECCTTSSHHHHHHHHTGGG-----TCEEEEHHHHCSH----------------HHHHHHHHHHHHTTC
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHhc-----CCEEEchHHHHHH----------------HHHHHHHHHHHHCCC
Confidence            4455778999999999999999999887655     3568888877521                112222333335577


Q ss_pred             chhcccCChHHHHHHHHHHhCCC--CCccEEEEeCCccchhccChhh
Q 023675          176 ICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG  220 (279)
Q Consensus       176 ~~i~~~~~~~~~~r~~ar~l~~~--~~~i~i~ld~p~~~l~~R~~~~  220 (279)
                      .++++.......+|...+.++..  ..+..++++.|.+.+.+|...+
T Consensus        67 ~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R  113 (172)
T d1yj5a2          67 RVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR  113 (172)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred             CceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHh
Confidence            77788777666666555544432  3556689999999999998655

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.97  E-value=2.2e-10  Score=90.79  Aligned_cols=38  Identities=32%  Similarity=0.392  Sum_probs=30.6

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++|-.|+|+|+|||||||+++.|+..|+    +..+++++++
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~----~~~~~~~~~~   40 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD----GFQHLEVGKL   40 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST----TEEEEEHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC----CCcEEeHHHH
Confidence            5788899999999999999999999883    2335555554

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.87  E-value=1.2e-09  Score=84.59  Aligned_cols=110  Identities=19%  Similarity=0.149  Sum_probs=61.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccccc-----CCCCCcccHHHHHHHHHHHHHHHHhCC---
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-----DLSFKAEDRVENIRRIGEVAKLFADAG---  174 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~---  174 (279)
                      ++|+|+|+|||||||+++.|....    .|.++++.++++.....     ...+......................+   
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC----CCCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccC
Confidence            588999999999999999886644    25778888887543321     112222222222222223333332322   


Q ss_pred             cchhcccCChHHHHH----HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675          175 VICIACLISPYRKDR----DACRSMLPEGDFIEVFMDVPLQVCEARDP  218 (279)
Q Consensus       175 ~~~i~~~~~~~~~~r----~~ar~l~~~~~~i~i~ld~p~~~l~~R~~  218 (279)
                      ...+++........+    +.++..  ..++..+++++|.+.+.+|..
T Consensus        79 ~~vi~d~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~~~e~~~~R~~  124 (152)
T d1ly1a_          79 KGVIISDTNLNPERRLAWETFAKEY--GWKVEHKVFDVPWTELVKRNS  124 (152)
T ss_dssp             CEEEECSCCCSHHHHHHHHHHHHHH--TCEEEEEECCCCHHHHHHHHT
T ss_pred             CCcccccccCCHHHHHHHHHhhhhh--ccchhhhhcCCCHHHHHHHHH
Confidence            223444333223333    333333  234566899999999988874

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.85  E-value=4.8e-10  Score=91.02  Aligned_cols=38  Identities=24%  Similarity=0.345  Sum_probs=31.3

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      -.++.+|+|+||+||||||+++.|+..|+     -++++..++
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g-----~~~i~~g~~   40 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFG-----WVHLSAGDL   40 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHC-----CceEchhhH
Confidence            35778999999999999999999999884     346776554

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=2.5e-09  Score=86.83  Aligned_cols=164  Identities=14%  Similarity=0.094  Sum_probs=81.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-cccccccC-------------CCCCcccHHHHHHHHHH
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRD-------------LSFKAEDRVENIRRIGE  165 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i~~~~~~~-------------~~~~~~~~~~~~~~v~~  165 (279)
                      .+-.+|+|+||+||||||+++.|+..|+     -.+++..+ ++......             .+....+ ......+..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g-----~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~   79 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS-----FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ-EITLALLRN   79 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS-----CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCH-HHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC-----CeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccc-hhHHHHHHH
Confidence            4567899999999999999999999985     34777543 33211100             0000000 011111111


Q ss_pred             HHH-HHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCC--------CCCCccc
Q 023675          166 VAK-LFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGK--------VKGFTGI  236 (279)
Q Consensus       166 ~~~-~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~--------~~~~~~~  236 (279)
                      ... .........+.........+..........+.+ .++++.|.+.+.+|...+-....+...        +..+...
T Consensus        80 ~~~~~~~~~~~~~vl~g~p~~~~q~~~~~~~~~~~~~-~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~  158 (196)
T d1ukza_          80 AISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKF-ILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKET  158 (196)
T ss_dssp             HHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSE-EEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHT
T ss_pred             HHHhhhccCCCceeeeccchhHHHHHHHHHhccccce-eeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHH
Confidence            111 111111122222222233444555555555554 389999999998886543110000000        0001111


Q ss_pred             c---CcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhC
Q 023675          237 D---DPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDEN  274 (279)
Q Consensus       237 r---~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~  274 (279)
                      .   ..||......+.|+    .+.+++++.++|.+.+++.
T Consensus       159 ~~~l~~~y~~~~~~~~Id----~~~s~eeV~~~I~~~i~~~  195 (196)
T d1ukza_         159 SMPVIEYFETKSKVVRVR----CDRSVEDVYKDVQDAIRDS  195 (196)
T ss_dssp             THHHHHHHHTTTCEEEEE----CSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCEEEEE----CCCCHHHHHHHHHHHHHhh
Confidence            1   11333221223454    4569999999999988764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.77  E-value=9.2e-10  Score=86.73  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=26.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .|+|+|++||||||+++.|+..|+.+     +++.+++
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~-----~i~~~~~   38 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLK-----YINVGDL   38 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCc-----EEechHH
Confidence            36799999999999999999998544     5665544

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.71  E-value=3.8e-10  Score=91.45  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=28.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      |-.|+|+||+||||||+++.|+..|+.+     +++.+++
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~~~-----~is~~~~   37 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQLA-----HISAGDL   37 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCCE-----ECCHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHCCc-----EEehhHH
Confidence            4578999999999999999999999543     6775443

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.65  E-value=5.5e-08  Score=78.65  Aligned_cols=162  Identities=14%  Similarity=0.079  Sum_probs=84.0

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec-cccccc-------------CCCCCcccHHHHHHHH
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC-RHGLNR-------------DLSFKAEDRVENIRRI  163 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i-~~~~~~-------------~~~~~~~~~~~~~~~v  163 (279)
                      .+.++.+|+|+||+||||||+++.|+..++     ..+++..++ +.....             .-.+.+.+..  ...+
T Consensus         4 ~~~~~~iI~l~G~pGSGKsT~a~~La~~~g-----~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   76 (194)
T d3adka_           4 KLKKSKIIFVVGGPGSGKGTQCEKIVQKYG-----YTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETV--LDML   76 (194)
T ss_dssp             HHHTSCEEEEEECTTSSHHHHHHHHHHHTC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHH--HHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHhC-----CeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchhee--eeeh
Confidence            356789999999999999999999999985     347775443 321110             0011111110  0111


Q ss_pred             HHHHHHHHhC--CcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccc-----
Q 023675          164 GEVAKLFADA--GVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGI-----  236 (279)
Q Consensus       164 ~~~~~~~~~~--~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~-----  236 (279)
                      ..  .+....  ....+.++......+.......+..+.+ .++++.+.+.+.+|...+.....+..........     
T Consensus        77 ~~--~l~~~~~~~~g~ildg~pr~~~qa~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y  153 (194)
T d3adka_          77 RD--AMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTL-LLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETY  153 (194)
T ss_dssp             HH--HHHTTTTTCSCEEEESCCSSHHHHHHHHHHTCCCSE-EEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHH
T ss_pred             hh--hhhhcccccccceeeeccchhHHHHHHHHHhCCccc-hhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHH
Confidence            10  111111  1111233333333444455555555443 4889999999988865543222222221111100     


Q ss_pred             ---c---CcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675          237 ---D---DPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE  273 (279)
Q Consensus       237 ---r---~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~  273 (279)
                         .   -.||.....-..|+    ++.+++++.++|...|++
T Consensus       154 ~~~~~~~~~~y~~~~~~~~Id----~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         154 YKATEPVIAFYEKRGIVRKVN----AEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             HHHTHHHHHHHTTTTCEEEEE----CCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCEEEEE----CCCCHHHHHHHHHHHHHh
Confidence               1   11343321113455    456999999999998875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=1.4e-08  Score=82.57  Aligned_cols=114  Identities=16%  Similarity=0.128  Sum_probs=66.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCC-------CcccHHHH----HHHHHHHH-HH
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF-------KAEDRVEN----IRRIGEVA-KL  169 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~-------~~~~~~~~----~~~v~~~~-~~  169 (279)
                      |.+|+++|+|||||||+++.|++.+.+.+.....+++|.++..+......       ........    ...+.... .+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL   81 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999987666667788888776443221111       11111110    11111111 22


Q ss_pred             HHhCCcchhcccCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhc
Q 023675          170 FADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEA  215 (279)
Q Consensus       170 ~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~  215 (279)
                      ....+..++.+...+...+|..+..++...  .++.+.+.++.+.+.+
T Consensus        82 ~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (213)
T d1bifa1          82 SEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIA  129 (213)
T ss_dssp             HTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHH
T ss_pred             HhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHH
Confidence            334455667777776667776555554322  3333556666555544

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=8.1e-09  Score=82.78  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=27.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .|+|+|++||||||+++.|+..|+     ..+++.+++
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g-----~~~i~~~d~   36 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH-----AAHLATGDM   36 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CceEecccc
Confidence            477899999999999999999984     347777554

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2e-08  Score=81.01  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      |-+|+|+||+||||||+++.|+..|+.     .+++..+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~-----~~i~~g~   34 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGY-----THLSAGE   34 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCC-----EEEEHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCC-----ceEcHHH
Confidence            458999999999999999999998843     3666433

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=7.3e-08  Score=76.74  Aligned_cols=33  Identities=18%  Similarity=0.148  Sum_probs=26.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .|+|+|++||||||+++.|+..++.+     +++..++
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~-----~i~~~~l   34 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIP-----QISTGDM   34 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCC-----EEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc-----eechhhH
Confidence            47899999999999999999998543     6765443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.44  E-value=3.8e-08  Score=77.81  Aligned_cols=37  Identities=27%  Similarity=0.321  Sum_probs=32.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .|+|+||||||||||++.|++.+ .+..|.+++++...
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l-~~~~g~~~~~~~~~   38 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERL-GKRAIGFWTEEVRD   38 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH-GGGEEEEEEEEEC-
T ss_pred             EEEEECCCCcHHHHHHHHHHhcC-CCCcceEEECCcch
Confidence            38999999999999999999999 77788888876543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.44  E-value=3.3e-08  Score=78.26  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l  136 (279)
                      +++|+|.|++||||||+++.|+..|...+.....+
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~   35 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV   35 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            36899999999999999999999986554343333

>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.42  E-value=3.1e-08  Score=72.76  Aligned_cols=48  Identities=8%  Similarity=0.158  Sum_probs=43.9

Q ss_pred             CCcccCCCcceeeeeeccccc--CccccccCccccccccccccchhhhhhhhccccccccc
Q 023675           13 RPAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLC   71 (279)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~   71 (279)
                      ...|.+||||+|+|+++.|+.  +|.+++.+|+|.+||+.++.           |+|+||+
T Consensus        54 ~~~l~~Ndi~~v~i~~~~~i~~d~y~~n~~~G~fiLiD~~~~~-----------TvaaG~I  103 (105)
T d1zunb2          54 ASSLQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVIDRLTNG-----------TVAAGMI  103 (105)
T ss_dssp             CSCBCTTCEEEEEEEEEEEEECCCTTTCTTTTEEEEECTTTCC-----------EEEEEEE
T ss_pred             ccccCCccEEEEEEEECCccccCccccCcCceeEEEEECCCCC-----------EEEEEEE
Confidence            356999999999999999999  99999999999999999988           7777775

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.37  E-value=1.4e-07  Score=74.87  Aligned_cols=35  Identities=29%  Similarity=0.422  Sum_probs=28.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld  137 (279)
                      ++++|.|++||||||+++.|+..|...+.....+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~   36 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN   36 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            47889999999999999999999965554444443

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.34  E-value=1.1e-07  Score=76.54  Aligned_cols=36  Identities=28%  Similarity=0.347  Sum_probs=29.6

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      ++|--|+|+||+||||||+++.|+..|+     -.+++..+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g-----~~~i~~gd   36 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFC-----VCHLATGD   36 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHT-----CEEEEHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhC-----CeEEeHHH
Confidence            4677888999999999999999999884     34777543

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=4.1e-08  Score=78.41  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=26.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .|+|+|++||||||+++.|+..|+..     +++.+++
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~-----~i~~~~l   34 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIP-----QISTGEL   34 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCC-----EEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCc-----eEchHHH
Confidence            47899999999999999999998533     6665443

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.28  E-value=8.5e-08  Score=77.55  Aligned_cols=155  Identities=15%  Similarity=0.100  Sum_probs=75.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec-ccccccC-------------CCCCcccHHHHHHHHHHHH
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC-RHGLNRD-------------LSFKAEDRVENIRRIGEVA  167 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i-~~~~~~~-------------~~~~~~~~~~~~~~v~~~~  167 (279)
                      .-.|+|+||+||||||+++.|+..|+     -.+++..++ ++.+...             -.+.+.+.  ....+....
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~g-----~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~l~~~~~   78 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHFE-----LKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDV--MTRLVLHEL   78 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHBC-----CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHH--HHHHHHHHH
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchh--hhhhhhhhh
Confidence            44688999999999999999999985     347776444 3211100             00111111  011111111


Q ss_pred             HHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhH---HHHHhCCCCCCCccccCcCCCCC
Q 023675          168 KLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL---YKLAREGKVKGFTGIDDPYEPPL  244 (279)
Q Consensus       168 ~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l---~~~~~~~~~~~~~~~r~~~~~~~  244 (279)
                      ......+  .+.++......+.+.....+ .+.+ .++|++|.+.+.+|...+-   ..+...  +.........||...
T Consensus        79 ~~~~~~~--~ildGfPr~~~q~~~l~~~~-~~~~-vi~L~v~~~~l~~R~~~r~e~~~kr~~~--y~~~~~~v~~~Y~~~  152 (189)
T d2ak3a1          79 KNLTQYN--WLLDGFPRTLPQAEALDRAY-QIDT-VINLNVPFEVIKQRLTDRPETVVKRLKA--YEAQTEPVLEYYRKK  152 (189)
T ss_dssp             HHHTTSC--EEEESCCCSHHHHHHHHTTC-CCCE-EEEEECCHHHHHHHHTGSHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred             hhhhhcC--cccccccchhhHHHHhhhcC-cceE-EEEEeccchhhhhhcccchHHHHHHHHH--HHHHHHHHHHHHHhc
Confidence            1111112  22333332333334333333 3333 3899999999999875441   111110  000000112234321


Q ss_pred             CCceEEEccCCCCCCHHHHHHHHHHHHHhC
Q 023675          245 NCEIVLKQMGDDCPSPADMVETVVSYLDEN  274 (279)
Q Consensus       245 ~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~  274 (279)
                       ..++. .   +..+++++.++|...|..+
T Consensus       153 -~~l~~-i---dg~~~~eV~~~I~~~i~~~  177 (189)
T d2ak3a1         153 -GVLET-F---SGTETNKIWPHVYAFLQTK  177 (189)
T ss_dssp             -TCEEE-E---ECSSHHHHHHHHHHHHHTT
T ss_pred             -CCEEE-E---CCCChHHHHHHHHHHHHHH
Confidence             22332 2   2346889999999999764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.6e-06  Score=70.96  Aligned_cols=38  Identities=32%  Similarity=0.462  Sum_probs=31.2

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld  137 (279)
                      ++|.+|+|-|+.||||||+++.|...|...+...+++.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~   38 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   38 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            47899999999999999999999999865555555553

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.19  E-value=3.2e-07  Score=73.16  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=26.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      .|+|+|++||||||+++.|+..|+.+     +++..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~-----~is~gd   33 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTP-----HISTGD   33 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCc-----eeeHHH
Confidence            47899999999999999999999544     666433

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.19  E-value=5.4e-07  Score=71.33  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=27.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .|+|+|++||||||+++.|+..|+.+     +++..++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~-----~i~~~~l   34 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIP-----HISTGDM   34 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCc-----eechhHH
Confidence            47899999999999999999999544     7776554

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=9.1e-06  Score=65.91  Aligned_cols=34  Identities=29%  Similarity=0.374  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEE
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTY  134 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i  134 (279)
                      +|.+|+|-|+.||||||+++.|...|...+...+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~   34 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM   34 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence            5889999999999999999999998854443333

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.10  E-value=1.4e-06  Score=71.08  Aligned_cols=27  Identities=33%  Similarity=0.421  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccC
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWR  129 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~  129 (279)
                      -+|+|-||+||||||+++.|+..|+.+
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg~~   30 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFGFT   30 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            357888999999999999999999644

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.2e-06  Score=68.06  Aligned_cols=26  Identities=38%  Similarity=0.441  Sum_probs=23.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccC
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWR  129 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~  129 (279)
                      +++|+|++|||||||++.|.+.|...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            79999999999999999999988433

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.96  E-value=2.6e-06  Score=67.68  Aligned_cols=42  Identities=40%  Similarity=0.441  Sum_probs=32.1

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ..+-+|+|.|++|||||||++.|...+...+.....++.++.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~   61 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecccccc
Confidence            345689999999999999999999988655544555555443

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=1.1e-05  Score=64.38  Aligned_cols=22  Identities=50%  Similarity=0.555  Sum_probs=20.6

Q ss_pred             EEEEcCCCChHHHHHHHHHHcc
Q 023675          105 IWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      |+|+||||||||||++.|...+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998876

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.92  E-value=2.4e-06  Score=66.81  Aligned_cols=27  Identities=30%  Similarity=0.292  Sum_probs=24.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHW  128 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~  128 (279)
                      .+.|+|+|++|||||||++.|+..++.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~   33 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNT   33 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            367999999999999999999999853

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.89  E-value=5.9e-06  Score=65.58  Aligned_cols=25  Identities=36%  Similarity=0.547  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      |.+++|+||||||||||.+.|...+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            7899999999999999999998876

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=4e-05  Score=62.51  Aligned_cols=46  Identities=28%  Similarity=0.452  Sum_probs=35.3

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      +..+++.+++|+||+|+||||.+--|+..+...+.-..++..|..|
T Consensus         4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   49 (211)
T d2qy9a2           4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR   49 (211)
T ss_dssp             CCSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            4456688999999999999999999998885555545556666554

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.77  E-value=5e-06  Score=69.43  Aligned_cols=43  Identities=21%  Similarity=0.374  Sum_probs=35.6

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH  143 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~  143 (279)
                      ..+.+..+.|+||+||||||++++|++.+.   .+.+.+++++++.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~---~~~~~i~~d~~~~   70 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQ   70 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhh---cceEEEecHHHHH
Confidence            445677899999999999999999999884   3477889988764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.76  E-value=5.5e-05  Score=61.71  Aligned_cols=45  Identities=27%  Similarity=0.327  Sum_probs=29.5

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      .-+.+.+++|+||+|+||||.+--|+..+...+.-..++..|..|
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   52 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR   52 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccc
Confidence            335788999999999999999988888875444444455555554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=5.2e-05  Score=61.95  Aligned_cols=47  Identities=26%  Similarity=0.384  Sum_probs=33.4

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      ++.-.++.+++|+||+|+||||.+--|+..+...+.-..++..|..|
T Consensus         5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R   51 (213)
T d1vmaa2           5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR   51 (213)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc
Confidence            44556788999999999999999888888774444434444444443

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.75  E-value=9.3e-06  Score=63.28  Aligned_cols=28  Identities=32%  Similarity=0.289  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCC
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRG  130 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~  130 (279)
                      .+++|+|++|||||||++.|.+.|...+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g   29 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREG   29 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            4789999999999999999999885443

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=7.1e-06  Score=63.90  Aligned_cols=25  Identities=36%  Similarity=0.545  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +.|.|+|++|||||||++.+++.+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4689999999999999999999984

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.3e-05  Score=64.93  Aligned_cols=41  Identities=29%  Similarity=0.351  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCC-----ccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-----~G~i~ldgd~i  141 (279)
                      +|-+|+|.|++||||||+++.|+..+....     .....+..|+.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~y   46 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF   46 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccc
Confidence            367899999999999999999999874321     23456666664

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.63  E-value=0.00011  Score=59.67  Aligned_cols=42  Identities=33%  Similarity=0.514  Sum_probs=32.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      ++.+++|+||+|+||||.+--|+..+...+.-..++..|..|
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   46 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR   46 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccc
Confidence            578999999999999999988998875444445556666554

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.2e-05  Score=63.77  Aligned_cols=26  Identities=35%  Similarity=0.497  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +|.+++|+||||||||||.+.|....
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999999998875

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.53  E-value=0.00011  Score=59.64  Aligned_cols=43  Identities=28%  Similarity=0.468  Sum_probs=34.1

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      +.+.++.|+||+|+||||.+--|+..+...+.-..++..|..|
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   50 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR   50 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            3467899999999999999999998886555556677777665

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=2.7e-05  Score=62.84  Aligned_cols=34  Identities=53%  Similarity=0.844  Sum_probs=28.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEc-Ceecc
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCR  142 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld-gd~i~  142 (279)
                      +|+|.||+||||||+++.|+..|+-+     +++ |+-+|
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~-----~iStGdLlR   39 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWH-----LLDSGAIYR   39 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc-----EECHHHHHH
Confidence            89999999999999999999999644     676 44444

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.42  E-value=5.5e-05  Score=61.79  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=26.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg  138 (279)
                      +++++|+.|||||||.+.|.+.+ ..++....++-
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~-~~~~~~~ivn~   35 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL-EDNYKVAYVNL   35 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-TTTSCEEEEEC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH-hhCCeEEEEec
Confidence            68999999999999999999876 33344445543

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=7.5e-05  Score=64.33  Aligned_cols=42  Identities=26%  Similarity=0.262  Sum_probs=32.7

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ldgd~i  141 (279)
                      +.+-+|+|.|++||||||+++.|...|..  .+.....+..|+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            45789999999999999999999998842  1233556666665

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.31  E-value=0.00021  Score=59.47  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=29.0

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG  138 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg  138 (279)
                      .+...+.|.||+|||||+++++|+..++.+   .+.++.
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~~~~~---~~~i~~   73 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEESNFP---FIKICS   73 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTCS---EEEEEC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhccccc---cccccc
Confidence            455678999999999999999999988544   455554

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.31  E-value=6.3e-05  Score=59.64  Aligned_cols=35  Identities=43%  Similarity=0.464  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+-+|+|+|++||||||+++.|..+ +.+     +++.|.+
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~-g~~-----~~~~D~~   36 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW-GYP-----VLDLDAL   36 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-TCC-----EEEHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC-CCe-----EEEccHH
Confidence            4678999999999999999999764 233     5666654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.00023  Score=59.54  Aligned_cols=42  Identities=19%  Similarity=0.247  Sum_probs=33.0

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      -+..+.-+.|.||+|||||+++++|+..++.+   .+.++..++.
T Consensus        41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~---~~~i~~~~l~   82 (256)
T d1lv7a_          41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSDFV   82 (256)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHHHTCC---EEEECSCSST
T ss_pred             CCCCCCeEEeeCCCCCCccHHHHHHHHHcCCC---EEEEEhHHhh
Confidence            34456778899999999999999999988544   6778877664

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.25  E-value=3.6e-05  Score=65.71  Aligned_cols=40  Identities=30%  Similarity=0.463  Sum_probs=30.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      -+|+|.|.|||||||+++.|...+...+-....+.+|+..
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            3899999999999999999999885444445688999874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.24  E-value=5.1e-05  Score=60.32  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=26.8

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ...++-+|+|-|..||||||+++.|++.++
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456788999999999999999999999884

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=8.3e-05  Score=58.81  Aligned_cols=25  Identities=16%  Similarity=0.250  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ...++|+||||+|||||.+.|.+..
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhC
Confidence            3579999999999999999998765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.22  E-value=9.2e-05  Score=63.73  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++..+.|+||+|+|||.|+++|++.+..+   .+.+++-.+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~---~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccc---hhccccccc
Confidence            45567799999999999999999998543   666776554

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=6.8e-05  Score=59.81  Aligned_cols=22  Identities=45%  Similarity=0.533  Sum_probs=20.5

Q ss_pred             EEEEcCCCChHHHHHHHHHHcc
Q 023675          105 IWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      |+|+||||||||||++.|...+
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998876

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.21  E-value=7.5e-05  Score=61.38  Aligned_cols=26  Identities=46%  Similarity=0.657  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +|++.+|+|+||.|||||.|.|.+..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            68999999999999999999998765

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.00015  Score=59.39  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=27.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+.|.||+|+||||++++|+..+..+   .+.+++-+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~---~~~~~~~~~   71 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTN---IHVTSGPVL   71 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCC---EEEEETTTC
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCC---cccccCccc
Confidence            47899999999999999999998533   444555443

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.00012  Score=61.97  Aligned_cols=43  Identities=21%  Similarity=0.164  Sum_probs=28.4

Q ss_pred             eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      |+++|.. +|.+...+...++ +.+|+|+|||||||++.+|.-.+
T Consensus         6 i~I~NFk-sf~~~~~i~f~~~-lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_           6 LYLKGFK-SFGRPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EEEESBT-TBCSCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             EEEECeE-EECCCEEEeCCCC-eEEEECCCCCcHHHHHHHHHHHh
Confidence            4555532 1223223444443 88999999999999999996654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.10  E-value=0.00028  Score=63.67  Aligned_cols=55  Identities=16%  Similarity=0.228  Sum_probs=38.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHH
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIG  164 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~  164 (279)
                      +.-|.|+||+|||||-|++.|++.+.-|   .+..|...+.+     .||...+-...+..+.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTe-----aGYvG~DVesii~~L~  103 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTE-----VGYVGKEVDSIIRDLT  103 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC---------CCCCTHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCC---EEEeecceeee-----cceeecchhHHHHHHH
Confidence            4579999999999999999999999666   67777766542     3666665544444443

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00019  Score=63.17  Aligned_cols=42  Identities=24%  Similarity=0.208  Sum_probs=30.6

Q ss_pred             CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHH
Q 023675           81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS  123 (279)
Q Consensus        81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~  123 (279)
                      .|.+.|.. +|.+...+....+.+.+|+|+|||||||++.+|.
T Consensus         5 ~l~l~NFk-s~~~~~~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_           5 GLELSNFK-SYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEEESCS-SCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCee-eeCCCEEEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            35666541 4544445566656688999999999999999985

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.07  E-value=0.0001  Score=59.37  Aligned_cols=34  Identities=32%  Similarity=0.444  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      .+|+|+|.+||||||+++.|.. ++.     ..+|.|.+.
T Consensus         3 ~iIgITG~igSGKStv~~~l~~-~G~-----~vidaD~i~   36 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD-LGV-----PLVDADVVA   36 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTC-----CEEEHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CCC-----eEEEchHHH
Confidence            4789999999999999998864 433     377877663

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.00021  Score=58.45  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=27.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ..+.|.||+|+||||++++|++.+..+   ...+++...
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~~---~~~~~~~~~   71 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTSGPAI   71 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCC---EEEEETTTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC---eEeccCCcc
Confidence            357799999999999999999988433   445555443

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00011  Score=59.29  Aligned_cols=34  Identities=35%  Similarity=0.429  Sum_probs=27.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      -+|+|+|.+||||||+++.|..+      |...+|.|.+.
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~------G~~vidaD~i~   37 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL------GINVIDADIIA   37 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT------TCEEEEHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC------CCcEEEchHHH
Confidence            38999999999999999998754      23378877664

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.02  E-value=0.00016  Score=59.27  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=28.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc-Ceecc
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCR  142 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld-gd~i~  142 (279)
                      .+|+|+|..||||||+++.|...+     |...++ +|.+.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~-----g~~~i~~aD~i~   37 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY-----SAVKYQLAGPIK   37 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS-----CEEECCTTHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC-----CCeEEcccHHHH
Confidence            479999999999999999997765     355777 66553

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00018  Score=56.72  Aligned_cols=28  Identities=18%  Similarity=0.278  Sum_probs=25.2

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +++|+++.|.|++||||||++..++...
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999999888654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.0002  Score=58.91  Aligned_cols=38  Identities=21%  Similarity=0.185  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +...+.|.||+|+||||++++|++.+..   -.+.++..+.
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~~---~~~~~~~~~~   88 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELGY---DILEQNASDV   88 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTC---EEEEECTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHh---hhhccccccc
Confidence            3457899999999999999999998742   2344555443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.95  E-value=0.00026  Score=56.41  Aligned_cols=33  Identities=39%  Similarity=0.505  Sum_probs=27.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l  136 (279)
                      +|+|-|..||||||+++.|...|...+...+.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~   34 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL   34 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            689999999999999999999885555555555

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00022  Score=57.87  Aligned_cols=27  Identities=37%  Similarity=0.564  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +|.+|+|-|+.||||||++++|+..|.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            699999999999999999999999983

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.92  E-value=0.00037  Score=57.90  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+.-+.|.||+|||||+++++|++.++.+   .+.++..++
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~~~~~---~~~i~~~~l   78 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASGSDF   78 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEHHHH
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHcCCC---EEEEEhHHh
Confidence            34568999999999999999999988544   666766554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.92  E-value=7.5e-05  Score=61.63  Aligned_cols=26  Identities=38%  Similarity=0.459  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +|.+.+|+|+||.|||||.|.|.+..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            57888999999999999999998876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00014  Score=59.34  Aligned_cols=27  Identities=33%  Similarity=0.251  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +++.|+|-|+.||||||+++.|++.|.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            468999999999999999999999884

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.89  E-value=0.00027  Score=54.76  Aligned_cols=30  Identities=27%  Similarity=0.498  Sum_probs=27.5

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ..++|.++.|.|.-||||||+.+.+++.+.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            447899999999999999999999999985

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00062  Score=56.75  Aligned_cols=41  Identities=20%  Similarity=0.274  Sum_probs=30.9

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      ++++.-+.|.||+|||||+++++++..+..+   .+.++..++.
T Consensus        35 ~~~~~giLL~GppGtGKT~l~~ala~~~~~~---~~~i~~~~l~   75 (258)
T d1e32a2          35 VKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLINGPEIM   75 (258)
T ss_dssp             CCCCCEEEEECCTTSSHHHHHHHHHHHTTCE---EEEECHHHHT
T ss_pred             CCCCceeEEecCCCCCchHHHHHHHHHhCCe---EEEEEchhhc
Confidence            3445568899999999999999999987433   5556655543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.86  E-value=0.00022  Score=61.81  Aligned_cols=37  Identities=19%  Similarity=0.262  Sum_probs=30.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld  137 (279)
                      +.+..+.++|+.||||||++++|.+.+ ++..-.+.+.
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i-~~~~rivtiE  200 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFI-PKEERIISIE  200 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEE
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhc-ccccceeecc
Confidence            445668999999999999999999998 6666666664

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.86  E-value=0.00023  Score=57.95  Aligned_cols=24  Identities=38%  Similarity=0.534  Sum_probs=21.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccc
Q 023675          104 VIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+.|.||+|+||||++++|++.+.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH
Confidence            578999999999999999999763

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00059  Score=57.18  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=31.3

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      -+.++.-+.|.||+|+|||+++++|++.++.+   .+.++..++
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~---~~~~~~~~l   77 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIKGPEL   77 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCE---EEEECHHHH
T ss_pred             CCCCCCeEEEECCCCCcchhHHHHHHHHhCCc---EEEEEHHHh
Confidence            34456678899999999999999999998543   555654444

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.83  E-value=0.00038  Score=54.98  Aligned_cols=22  Identities=32%  Similarity=0.368  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .|+|+|++|+|||||++.|.+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999874

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.83  E-value=0.00027  Score=54.72  Aligned_cols=23  Identities=35%  Similarity=0.387  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +|+|+|++|+|||||++.|.+.-
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998753

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.81  E-value=0.00024  Score=55.40  Aligned_cols=22  Identities=41%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .|+|+|++|+|||||++.|.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999875

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.81  E-value=0.00046  Score=56.63  Aligned_cols=27  Identities=19%  Similarity=0.121  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+..+.|.||+|+||||+++.|+..+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            456889999999999999999999984

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00039  Score=60.20  Aligned_cols=29  Identities=31%  Similarity=0.324  Sum_probs=25.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcccc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHW  128 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~  128 (279)
                      .+.-+|+|+|++|+|||||.+.|.+.+..
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~   80 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR   80 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            45788999999999999999999987743

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00033  Score=55.64  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +|+|+|++|+|||||++.|.+.-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00033  Score=53.34  Aligned_cols=24  Identities=38%  Similarity=0.498  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      |-.|+|+|.+++|||||++.|.+.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            557899999999999999999865

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.75  E-value=0.00035  Score=52.70  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .|+|+|++|+|||||++.|.+--
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999987643

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.73  E-value=0.00057  Score=55.61  Aligned_cols=41  Identities=20%  Similarity=0.266  Sum_probs=33.5

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd  139 (279)
                      +++|.++.|.|++||||||++..++......+...+++..+
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e   63 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE   63 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeecc
Confidence            67899999999999999999999888764555556677654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00033  Score=56.85  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=20.8

Q ss_pred             EEEEcCCCChHHHHHHHHHHcc
Q 023675          105 IWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +.|.||+|+||||++++|++.+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999999986

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00044  Score=58.74  Aligned_cols=42  Identities=24%  Similarity=0.202  Sum_probs=29.3

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccC---CccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~---~~G~i~ldgd~i  141 (279)
                      +.+-+|+|.|++|||||||++.|...|...   ....+.+.-|+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            357899999999999999999887665221   122444555554

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00042  Score=53.68  Aligned_cols=22  Identities=41%  Similarity=0.373  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      +|+|+|.+++|||||+|+|.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00063  Score=57.06  Aligned_cols=42  Identities=29%  Similarity=0.388  Sum_probs=37.0

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      +++|.++-|.|++||||||++-.++.....++.-.+++|...
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            468899999999999999999988888767888889999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00048  Score=51.83  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .|+|+|++|+|||||++.|.+--
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999853

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.62  E-value=0.00049  Score=53.58  Aligned_cols=22  Identities=36%  Similarity=0.367  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      +|+|+|.+|+|||||++.|.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999975

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.60  E-value=0.00069  Score=58.51  Aligned_cols=30  Identities=37%  Similarity=0.375  Sum_probs=25.3

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccC
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWR  129 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~  129 (279)
                      .+.-+|+|+|++|+|||||...|...+...
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~   78 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAA   78 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhc
Confidence            356789999999999999999999876433

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.59  E-value=0.00024  Score=55.72  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=19.4

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      |+|+|++++|||||++.|.+.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.59  E-value=0.00064  Score=53.03  Aligned_cols=26  Identities=31%  Similarity=0.305  Sum_probs=22.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ..+-.|+|+|.+|+|||||+++|.+.
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            34557999999999999999999874

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00047  Score=55.80  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=21.0

Q ss_pred             EEEEcCCCChHHHHHHHHHHccc
Q 023675          105 IWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +.|.||+|+||||++++|++.+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            67999999999999999998874

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.58  E-value=0.0031  Score=52.82  Aligned_cols=42  Identities=26%  Similarity=0.346  Sum_probs=36.5

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      ++.|.++-+.|++||||||++..++.....++...+|+|...
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~   95 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH   95 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc
Confidence            368999999999999999999999888766777789999874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.56  E-value=0.00056  Score=60.01  Aligned_cols=41  Identities=24%  Similarity=0.075  Sum_probs=31.7

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      -++++..+.|.||+|+||||++++|++.+..+   .+.+++-+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~---~i~in~s~~  190 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGK---ALNVNLPLD  190 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCE---EECCSSCTT
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCC---EEEEECcch
Confidence            34677899999999999999999999998522   444555443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00019  Score=56.03  Aligned_cols=30  Identities=33%  Similarity=0.349  Sum_probs=25.3

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ++.+.+| +.+|+|+|||||||++.+|.-.+
T Consensus        19 ~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          19 TFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             EECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            5556555 88999999999999999998766

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.54  E-value=0.0004  Score=53.58  Aligned_cols=27  Identities=30%  Similarity=0.366  Sum_probs=22.0

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ++.-.|+|+|.+|+|||||++.|.+-.
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344568899999999999999997753

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.52  E-value=0.0036  Score=52.44  Aligned_cols=43  Identities=28%  Similarity=0.316  Sum_probs=35.4

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      =++.|.++-|.|++||||||++-.++......+.-.+|||...
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            3578999999999999999998777766646666678999865

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.50  E-value=0.00089  Score=50.66  Aligned_cols=24  Identities=38%  Similarity=0.509  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.++|+|.+|+|||||++.+.+.-
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            348999999999999999998763

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.00052  Score=55.45  Aligned_cols=27  Identities=26%  Similarity=0.339  Sum_probs=23.9

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      +++|.++.|.|++||||||++..++-.
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            578999999999999999999887643

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.44  E-value=0.00035  Score=54.50  Aligned_cols=21  Identities=33%  Similarity=0.600  Sum_probs=19.5

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      |+|+|.+++|||||++.|.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00097  Score=54.13  Aligned_cols=26  Identities=19%  Similarity=0.155  Sum_probs=24.2

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHH
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      +++|.++.|.|++||||||++..++.
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            68899999999999999999998875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.00046  Score=53.43  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ..-.|+|+|.+++|||||+|+|.+.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4456999999999999999999765

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0012  Score=56.64  Aligned_cols=38  Identities=24%  Similarity=0.250  Sum_probs=30.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +...+.++||+|+|||.|++.|++.+..   ..+.+|.-..
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l~~---~~i~~d~s~~   88 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKALGI---ELLRFDMSEY   88 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTC---EEEEEEGGGC
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhccC---CeeEeccccc
Confidence            4457889999999999999999999853   3677776544

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.38  E-value=0.0015  Score=57.98  Aligned_cols=41  Identities=32%  Similarity=0.333  Sum_probs=31.9

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+.-++.+.||.||||||++..+...++.+....+.+. |++
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE-dPi  196 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DPI  196 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SSC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec-cCc
Confidence            46679999999999999999999998865555445554 444

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.37  E-value=0.00086  Score=54.56  Aligned_cols=28  Identities=29%  Similarity=0.359  Sum_probs=24.3

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +++|.++.|.|++||||||++-.++...
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999998776543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.00094  Score=53.13  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      +.|+|+|++|+|||||++.|.+.
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999875

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.00078  Score=54.40  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=21.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHccc
Q 023675          105 IWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +.|.||+|+||||++++|++.+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            67999999999999999999874

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.29  E-value=0.00055  Score=56.47  Aligned_cols=24  Identities=29%  Similarity=0.272  Sum_probs=21.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccc
Q 023675          104 VIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ++.|+||+|+||||+++.+++.+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            466779999999999999999874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.00073  Score=55.24  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=21.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHccc
Q 023675          105 IWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +.|.||+|+||||+++++++.+.
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhhc
Confidence            77999999999999999999863

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.29  E-value=0.0068  Score=51.76  Aligned_cols=41  Identities=22%  Similarity=0.186  Sum_probs=31.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      |..++.++||+|+|||.+++.|+..+.......+.+|.-..
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~   92 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   92 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             CceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            34467899999999999999999998544455666776443

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.28  E-value=0.0013  Score=53.26  Aligned_cols=37  Identities=30%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             EEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++|.|++|||||.|+++++..+...+...++++..+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~   75 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF   75 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHH
Confidence            7899999999999999999988667777777776544

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0011  Score=53.94  Aligned_cols=26  Identities=27%  Similarity=0.232  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      |++|+|=|.-||||||+++.|...+.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            57899999999999999999999884

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.24  E-value=0.00098  Score=51.26  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=22.5

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ++--.|+|+|.+|||||||++.|.+.
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            44567899999999999999999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.22  E-value=0.0012  Score=53.17  Aligned_cols=28  Identities=25%  Similarity=0.310  Sum_probs=25.4

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +++|+++.|.|++|+||||++..++-..
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999998654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.21  E-value=0.0009  Score=51.11  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .|+|+|++|+|||||++.|.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            48899999999999999998754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.20  E-value=0.0012  Score=54.10  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+..++|.|++|+|||||++.++..+.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            567899999999999999999988763

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.19  E-value=0.00039  Score=52.89  Aligned_cols=22  Identities=36%  Similarity=0.360  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -|+|+|.+++|||||+++|.+.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999999875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.17  E-value=0.0012  Score=52.75  Aligned_cols=25  Identities=24%  Similarity=0.403  Sum_probs=22.3

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHH
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALS  123 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~  123 (279)
                      +++|+++.|.|++|+||||++..++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            6789999999999999999986554

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.15  E-value=0.0013  Score=54.78  Aligned_cols=24  Identities=25%  Similarity=0.374  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .-.|+|+|.+|+|||||+|.|.|.
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCC
Confidence            456999999999999999999986

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.13  E-value=0.0012  Score=51.51  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .|+|+|.+.+|||||+++|.+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            4899999999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.08  E-value=0.002  Score=56.35  Aligned_cols=37  Identities=30%  Similarity=0.375  Sum_probs=28.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ...+.++||+|+|||-|++.|++.+..|   .+.+|.-.+
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~~~---~ir~D~s~~  104 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLDIP---IAISDATSL  104 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGC
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhcccc---eeehhhhhc
Confidence            4457889999999999999999987443   556665444

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.02  E-value=0.0048  Score=52.89  Aligned_cols=38  Identities=26%  Similarity=0.241  Sum_probs=28.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR  142 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~  142 (279)
                      ++.++||||+|||.+++.|++.+. ..-..+.+++-++.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~-~~~~~~~~~~~~~~  162 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALG-GKDKYATVRFGEPL  162 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHH-TTSCCEEEEBSCSS
T ss_pred             eEEEECCCCccHHHHHHHHHHHhc-CCCCeEEEEhhHhh
Confidence            566689999999999999999873 22234667776654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.02  E-value=0.0019  Score=53.62  Aligned_cols=41  Identities=29%  Similarity=0.200  Sum_probs=31.0

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCe
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGD  139 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd  139 (279)
                      +.+|+++.|.|++|+||||++..|+..+. ..+....++..+
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            57899999999999999999998886441 334445565543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.99  E-value=0.0018  Score=49.50  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -|+|+|++|+|||||++.|..--
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999887653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.99  E-value=0.0022  Score=50.36  Aligned_cols=25  Identities=48%  Similarity=0.476  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .|.-+.|+|+||+||||++-.|...
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            4778999999999999999887764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.90  E-value=0.002  Score=49.45  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=19.2

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ++++|.+|+|||||++.+.+-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            889999999999999988754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.87  E-value=0.0022  Score=48.98  Aligned_cols=20  Identities=20%  Similarity=0.345  Sum_probs=18.5

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q 023675          105 IWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~  124 (279)
                      ++|+|.+|+|||||++.+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998775

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.86  E-value=0.0022  Score=50.32  Aligned_cols=25  Identities=40%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .|.-+.|.|+||+||||++-.|...
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            5778999999999999999887653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.0024  Score=49.07  Aligned_cols=21  Identities=33%  Similarity=0.446  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ++|+|.+|+|||||++.+.+-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.71  E-value=0.0013  Score=56.44  Aligned_cols=25  Identities=36%  Similarity=0.339  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +..+.|+|++|+||||+++.|++.|
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CCeEEEECCCCccHHHHHHHHHHhC
Confidence            3468999999999999999999998

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.67  E-value=0.0024  Score=49.09  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.|+++|++|+|||||++.|.+.
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999988653

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.003  Score=48.77  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .++++|.+|+|||||++.+..-
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999988663

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0031  Score=48.51  Aligned_cols=22  Identities=32%  Similarity=0.388  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -++++|.+|+|||||++.+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999987754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.57  E-value=0.0037  Score=48.60  Aligned_cols=26  Identities=42%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.|.-+.|.|+||+||||++-.|...
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            35788999999999999999777665

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0032  Score=48.03  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .++++|.+|+|||||++.+..-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.003  Score=49.14  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      |+|+|.+|+|||||++.+..-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999988753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0034  Score=48.15  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -++|+|.+|+|||||++.+..-
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.0034  Score=47.83  Aligned_cols=21  Identities=38%  Similarity=0.509  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ++++|.+|+|||||++.+..-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0026  Score=51.58  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ++.|.|+-|||||||++.|.+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC
Confidence            68899999999999999998853

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0042  Score=50.83  Aligned_cols=24  Identities=29%  Similarity=0.235  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ..++.|+|||.|||||++|.++-.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHH
Confidence            468999999999999999987644

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0038  Score=47.58  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -|+|+|.+|+|||||++.+..-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999998764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.47  E-value=0.0038  Score=48.49  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=18.9

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      |+++|.+|+|||||++.+..-
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0036  Score=47.91  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 023675          104 VIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      -|+++|.+|+|||||++.+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.43  E-value=0.0046  Score=51.69  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ...+++|+|+.|.|||||++.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0037  Score=47.69  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .-|+|+|.+|+|||||++.+..-
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            35899999999999999998753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0049  Score=47.33  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=18.9

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      |+++|.+|+|||||++.+..-
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            889999999999999888753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0039  Score=47.81  Aligned_cols=21  Identities=33%  Similarity=0.450  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 023675          104 VIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      -|+|+|.+|+|||||++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.39  E-value=0.0042  Score=47.11  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      |+++|.+|+|||||++.+..-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.37  E-value=0.0044  Score=50.20  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +|+|+|.+.+|||||++.|.+..
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhhc
Confidence            59999999999999999998753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.004  Score=47.78  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      |+|+|.+|+|||||++.+..-
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998753

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.005  Score=49.19  Aligned_cols=26  Identities=35%  Similarity=0.443  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +..+.|.||+|+||||+++.+++.+.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            55688999999999999999999873

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0043  Score=47.49  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -++|+|.+|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            37899999999999999998764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=0.0047  Score=47.10  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .|+|+|.+|+|||||++.+..-
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999998753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0043  Score=47.06  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 023675          104 VIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      .|+++|.+|+|||||++.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0046  Score=47.09  Aligned_cols=22  Identities=32%  Similarity=0.359  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -++|+|.+|+|||||++.+..-
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999988753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0051  Score=50.09  Aligned_cols=26  Identities=27%  Similarity=0.464  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      +..+.|.||+|+||||++++++..+.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            44678999999999999999999874

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0052  Score=46.85  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 023675          104 VIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      -++|+|.+|+|||||++.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.18  E-value=0.003  Score=48.98  Aligned_cols=24  Identities=38%  Similarity=0.523  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      --.++++|.+|+|||||++.|..-
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            345889999999999999987543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.15  E-value=0.0048  Score=54.53  Aligned_cols=24  Identities=33%  Similarity=0.386  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      +--|+|+|.+|+|||||.|+|.|.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            456999999999999999999884

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.0051  Score=50.67  Aligned_cols=26  Identities=35%  Similarity=0.432  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +|.++.|+|++|+||||++-.|+..+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998887653

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.13  E-value=0.0059  Score=51.54  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      +-.++|+|.+.+|||||+++|.+.
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            456999999999999999999975

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.12  E-value=0.006  Score=49.59  Aligned_cols=22  Identities=32%  Similarity=0.329  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHH
Q 023675          103 CVIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      .++.|+|||.|||||++|.++-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            4889999999999999997654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0057  Score=47.15  Aligned_cols=22  Identities=41%  Similarity=0.530  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -|+++|.+|+|||||++.|.+-
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999998763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0056  Score=47.05  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -|+|+|.+|+|||||++.+..-
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999987754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.06  E-value=0.0054  Score=48.10  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ++|+|.+|+|||||++.+..-
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            889999999999999988754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0062  Score=46.53  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -|+++|.+|+|||||++.+..-
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998844

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0058  Score=47.04  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -|+|+|.+|+|||||++.+..-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988765

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.00  E-value=0.0048  Score=52.45  Aligned_cols=21  Identities=33%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      |+|+|.+-+|||||+|+|.+.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            899999999999999999875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0066  Score=46.40  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=19.2

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ++|+|.+|+|||||++.+..-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0063  Score=47.13  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .++|+|.+|+|||||++.+..-
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988764

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=94.96  E-value=0.011  Score=44.19  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCChHHH-HHHHHHHccccCCccEEEEc
Q 023675          102 GCVIWITGLSGSGKST-LACALSQALHWRGKLTYILD  137 (279)
Q Consensus       102 g~~i~lvG~sGsGKST-l~~~L~~~l~~~~~G~i~ld  137 (279)
                      |.+-.++|||.||||| |++.+-+.. ..+.-.+.+.
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~-~~~~kv~~ik   37 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE-YADVKYLVFK   37 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHH-HCCCcEEEEE
Confidence            7788999999999999 556554443 4444444443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.96  E-value=0.0038  Score=48.04  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=8.6

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q 023675          105 IWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~  124 (279)
                      |+|+|.+|+|||||++.|.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999987775

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.90  E-value=0.0071  Score=46.13  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -++++|.+|+|||||++.+..-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999987754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.87  E-value=0.0054  Score=47.03  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=21.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ++.-.|+++|++|+|||||++.+..-
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            34456889999999999999988654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0064  Score=46.70  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -|+|+|.+|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            47899999999999999998653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0073  Score=46.09  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 023675          104 VIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      -++++|.+|+|||||++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.82  E-value=0.0066  Score=47.27  Aligned_cols=29  Identities=31%  Similarity=0.299  Sum_probs=22.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccc--cCCccE
Q 023675          104 VIWITGLSGSGKSTLACALSQALH--WRGKLT  133 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~--~~~~G~  133 (279)
                      -+.|+|.+|+|||||++.+ .+..  .|+.|.
T Consensus         4 KivllG~~~vGKTsll~r~-~f~~~~~pTiG~   34 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM-RIIHGQDPTKGI   34 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH-HHHHSCCCCSSE
T ss_pred             EEEEECCCCCCHHHHHHHH-hcCCCCCCeeee
Confidence            4789999999999999998 3432  466663

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.008  Score=52.89  Aligned_cols=36  Identities=33%  Similarity=0.466  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHH-HHccccCCccEEEEcC
Q 023675          102 GCVIWITGLSGSGKSTLACAL-SQALHWRGKLTYILDG  138 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L-~~~l~~~~~G~i~ldg  138 (279)
                      ...+.++|++|||||++++.| ...+ ..+.+.+.+|.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~~-~~g~~~iiiD~   86 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTGL-LRGDRMVIVDP   86 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHH-HTTCEEEEEEE
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHHHH-hCCCCEEEEeC
Confidence            356899999999999998754 4444 55667777774

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.77  E-value=0.0085  Score=49.98  Aligned_cols=23  Identities=48%  Similarity=0.479  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -.++|||.+-+|||||+++|++.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHCC
Confidence            46899999999999999999975

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.73  E-value=0.012  Score=50.54  Aligned_cols=33  Identities=30%  Similarity=0.415  Sum_probs=26.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l  136 (279)
                      -.|.|=|+-|+||||+++.|+..+ ....+.+++
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l-~~~~~v~~~   39 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAA-SGGSPTLYF   39 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGG-GCSSCEEEE
T ss_pred             EEEEEECCccCCHHHHHHHHHHHh-ccCCCeEEE
Confidence            467888999999999999999998 444445554

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.72  E-value=0.0083  Score=45.82  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 023675          104 VIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      -++|+|.+|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.71  E-value=0.0086  Score=45.79  Aligned_cols=21  Identities=33%  Similarity=0.446  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 023675          104 VIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      -++++|.+|+|||||++.+..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.67  E-value=0.0094  Score=47.89  Aligned_cols=31  Identities=19%  Similarity=0.074  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccE
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLT  133 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~  133 (279)
                      -.|.|+|.+|+|||||++.+..--..|+-|.
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~   37 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGI   37 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCcCCCCCe
Confidence            3578999999999999998854443566554

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.009  Score=47.43  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ....+.|+|++|.|||+++..|++.+.
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHH
Confidence            345689999999999999999999873

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.0092  Score=45.36  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -|+|+|.+|+|||||++.+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.0057  Score=46.90  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=17.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 023675          104 VIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      -++++|.+|+|||||++.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987654

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.021  Score=42.28  Aligned_cols=37  Identities=22%  Similarity=0.149  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld  137 (279)
                      +|.+..++|||.|||||-+-.....+...+.-.+.+.
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ik   37 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   37 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEe
Confidence            5889999999999999977666666644444444443

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.0099  Score=49.58  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ....+.|||++|.|||++++.|++.+.
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHH
Confidence            345778999999999999999999864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.0097  Score=46.19  Aligned_cols=21  Identities=19%  Similarity=0.275  Sum_probs=18.9

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ++|+|.+|+|||||++.+..-
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            899999999999999987753

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.016  Score=47.81  Aligned_cols=42  Identities=29%  Similarity=0.474  Sum_probs=36.3

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      -+.+.++.+.|.=|.||||++-.|+..+...+.-+..+|.|.
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp   46 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            356789999999999999999999999977777788899885

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.27  E-value=0.019  Score=45.68  Aligned_cols=39  Identities=44%  Similarity=0.616  Sum_probs=33.5

Q ss_pred             CeEEEEE-cCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675          102 GCVIWIT-GLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus       102 g~~i~lv-G~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      |++|++. +.-|+||||++-.|+..+...+.-+.++|.|.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~   41 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6788888 77899999999999999977777788899764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.013  Score=49.21  Aligned_cols=30  Identities=20%  Similarity=0.183  Sum_probs=27.5

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +.+-+|+..+|+|++|+|||||+..|++..
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            477899999999999999999999999865

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.24  E-value=0.012  Score=45.56  Aligned_cols=22  Identities=27%  Similarity=0.372  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      -++|+|.+|+|||||++.+..-
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999877664

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.013  Score=45.15  Aligned_cols=23  Identities=26%  Similarity=0.242  Sum_probs=20.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .++++|.+|+|||||++.+..--
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            48999999999999999877643

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.012  Score=45.84  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -|+|+|.+|+|||||++.+..--
T Consensus         5 KvvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            37899999999999998876543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.04  E-value=0.014  Score=50.16  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=26.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLTYIL  136 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l  136 (279)
                      .|+|=|.-||||||+++.|+..+...+...+++
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~   39 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLI   39 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence            488999999999999999999985443444444

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.04  E-value=0.022  Score=43.63  Aligned_cols=29  Identities=24%  Similarity=0.216  Sum_probs=23.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHHccccCCccE
Q 023675          104 VIWITGLSGSGKSTLACALSQALHWRGKLT  133 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~  133 (279)
                      -++|+|..|+|||||++.+.... -|+.|.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~-~~t~~~   32 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIH-EAGTGI   32 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-SCCCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC-CCCccE
Confidence            47899999999999999987654 455554

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.022  Score=44.54  Aligned_cols=38  Identities=29%  Similarity=0.254  Sum_probs=32.9

Q ss_pred             eEEEEEcCC-CChHHHHHHHHHHccccCCccEEEEcCee
Q 023675          103 CVIWITGLS-GSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus       103 ~~i~lvG~s-GsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      +.+.|+|-. |.||||+.-.|+..|...+.-+.++|-|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~   40 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVA   40 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccc
Confidence            568899996 99999999999999987777788888654

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.027  Score=46.20  Aligned_cols=42  Identities=26%  Similarity=0.313  Sum_probs=35.3

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      +...++++.|.=|+||||++-.|+..+...+.-+..+|.|.-
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            345788999999999999999999988777777888999853

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.66  E-value=0.017  Score=45.15  Aligned_cols=23  Identities=35%  Similarity=0.375  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .|+++|...+|||||++.|.+..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEEeccCCcHHHHHHHHHhhh
Confidence            37999999999999999998754

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.62  E-value=0.035  Score=41.51  Aligned_cols=38  Identities=21%  Similarity=0.107  Sum_probs=28.3

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD  137 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld  137 (279)
                      +.|.+-.++|||.|||||-+-.....+...+.-.+.+.
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~   42 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   42 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEE
Confidence            46999999999999999987777766644444444443

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.59  E-value=0.016  Score=46.07  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=25.5

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +++-..++|+||+++|||+++.+|.+++
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            4566789999999999999999999998

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.49  E-value=0.013  Score=42.34  Aligned_cols=28  Identities=18%  Similarity=0.141  Sum_probs=21.5

Q ss_pred             ccCCeEEEEEcCCCChHHHHH-HHHHHcc
Q 023675           99 QQKGCVIWITGLSGSGKSTLA-CALSQAL  126 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~-~~L~~~l  126 (279)
                      +++|+.+.|.+++|||||+.+ ..+...+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~   32 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC   32 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence            467999999999999999665 3444444

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.47  E-value=0.019  Score=44.24  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -+.|+|.+|+|||||++.+..-.
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999997654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.42  E-value=0.016  Score=48.41  Aligned_cols=26  Identities=19%  Similarity=0.121  Sum_probs=21.8

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ..+ .++++|...||||||+|+|.|.=
T Consensus        25 ~~P-~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          25 DLP-QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCC-EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCC-eEEEEcCCCCCHHHHHHHHhCCC
Confidence            344 37799999999999999999963

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.40  E-value=0.018  Score=48.40  Aligned_cols=23  Identities=26%  Similarity=0.252  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .++++|...||||||+++|.|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999964

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.32  E-value=0.034  Score=44.08  Aligned_cols=39  Identities=33%  Similarity=0.426  Sum_probs=32.3

Q ss_pred             eEEEEE-cCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          103 CVIWIT-GLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       103 ~~i~lv-G~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      ++|+++ |.-|+||||++-.|+..+...+.-+.++|.|.-
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~   41 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT   41 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            356666 888999999999999999777777888998754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.016  Score=48.49  Aligned_cols=24  Identities=38%  Similarity=0.403  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .+|.++|+.++|||||+|.|.+..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            589999999999999999999865

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.28  E-value=0.027  Score=46.74  Aligned_cols=30  Identities=27%  Similarity=0.469  Sum_probs=25.9

Q ss_pred             eccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675           98 LQQKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ..++-.+++|.||.++||||++++|..++.
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            335567899999999999999999999983

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.21  E-value=0.028  Score=44.56  Aligned_cols=22  Identities=32%  Similarity=0.372  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .|+++|..++|||||++.|...
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            4899999999999999999654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.17  E-value=0.033  Score=45.58  Aligned_cols=39  Identities=33%  Similarity=0.354  Sum_probs=33.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC  141 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i  141 (279)
                      .+|+|.|.=|+||||++-.|+..|...+.-+..+|-|.-
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            468899999999999999999999777777888998753

>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, C-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Elongation factor eEF-1alpha, C-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.12  E-value=0.015  Score=41.43  Aligned_cols=35  Identities=11%  Similarity=0.114  Sum_probs=32.8

Q ss_pred             cccCCCcceeeeeeccccc--CccccccCcccccccc
Q 023675           15 AICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKA   49 (279)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~id~   49 (279)
                      -|..||.|.|.|.++.|+.  +|.+++.+|.|.+.|+
T Consensus        57 ~l~~g~~a~v~i~~~~~i~~e~~~~~~~lGrfilrd~   93 (107)
T d1jnya2          57 FLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM   93 (107)
T ss_dssp             CBCTTCEEEEEEEESSCEECCCTTTSGGGTEEEEEET
T ss_pred             cccCCceEEEEEEcCCceEEeecccCCCcCCEEEEEC
Confidence            3889999999999999998  9999999999999985

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.03  E-value=0.041  Score=44.91  Aligned_cols=39  Identities=26%  Similarity=0.305  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD  139 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd  139 (279)
                      .+.-|.|.|++|+||+++++.|...........+.++..
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~   60 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVA   60 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETT
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhh
Confidence            355689999999999999999987653333445555543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=92.82  E-value=0.029  Score=46.60  Aligned_cols=22  Identities=41%  Similarity=0.523  Sum_probs=19.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .++|+|+.|+|||||..+|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            5899999999999999999543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.80  E-value=0.029  Score=46.82  Aligned_cols=23  Identities=22%  Similarity=0.067  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHc
Q 023675          103 CVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ..|+|+|..|||||||+..|.-.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~   29 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYY   29 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46999999999999999999543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.033  Score=48.23  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=18.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHH
Q 023675          101 KGCVIWITGLSGSGKSTLACALS  123 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~  123 (279)
                      .+.+.+|.|++|+||||++..+.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHHH
Confidence            35699999999999999875443

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.57  E-value=0.034  Score=43.82  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHHcc
Q 023675          104 VIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .|+++|...+|||||++.|.+.+
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHH
Confidence            48999999999999999998753

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.39  E-value=0.032  Score=47.21  Aligned_cols=21  Identities=52%  Similarity=0.737  Sum_probs=18.3

Q ss_pred             cCCeEEEEEcCCCChHHHHHH
Q 023675          100 QKGCVIWITGLSGSGKSTLAC  120 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~  120 (279)
                      +.|.+-.+.|+||+|||||..
T Consensus        12 ~~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            468888999999999999774

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.30  E-value=0.048  Score=42.98  Aligned_cols=27  Identities=22%  Similarity=0.227  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+..+.|.|++|+||||++..|+..+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999998763

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.05  E-value=0.05  Score=42.75  Aligned_cols=27  Identities=30%  Similarity=0.316  Sum_probs=22.6

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +|.=.++++|.-.+|||||++.|.+.+
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhh
Confidence            344469999999999999999998754

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.99  E-value=0.038  Score=46.91  Aligned_cols=21  Identities=48%  Similarity=0.725  Sum_probs=18.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHH
Q 023675          100 QKGCVIWITGLSGSGKSTLAC  120 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~  120 (279)
                      +.|.+..+.|.||+|||||..
T Consensus        12 ~~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            467888999999999999983

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.99  E-value=0.072  Score=44.25  Aligned_cols=30  Identities=30%  Similarity=0.315  Sum_probs=26.6

Q ss_pred             eeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           97 LLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +.+-+|+.+.|+|.+|+|||||+..++.-.
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999888764

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.98  E-value=0.033  Score=47.24  Aligned_cols=21  Identities=48%  Similarity=0.702  Sum_probs=18.1

Q ss_pred             cCCeEEEEEcCCCChHHHHHH
Q 023675          100 QKGCVIWITGLSGSGKSTLAC  120 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~  120 (279)
                      +.|.+..+.|+||+|||||..
T Consensus        12 ~~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHHTC
T ss_pred             CCCCEEEEEccCCCCcccccc
Confidence            357889999999999999764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=91.84  E-value=0.025  Score=48.37  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHcc
Q 023675          103 CVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      -.|+|=|+-||||||+++.|+..+
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC--
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHh
Confidence            347889999999999999999887

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.77  E-value=0.03  Score=46.73  Aligned_cols=16  Identities=31%  Similarity=0.447  Sum_probs=13.3

Q ss_pred             EEEEEcCCCChHHHHH
Q 023675          104 VIWITGLSGSGKSTLA  119 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~  119 (279)
                      .+.|.|++||||||++
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3678899999999765

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=91.27  E-value=0.057  Score=50.66  Aligned_cols=29  Identities=31%  Similarity=0.415  Sum_probs=25.6

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      -++.+.|.+.|.||||||+-.+.|.+.|.
T Consensus        83 ~~~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          83 SQENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             HCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            35689999999999999999999988773

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.23  E-value=0.04  Score=45.44  Aligned_cols=22  Identities=18%  Similarity=0.274  Sum_probs=15.5

Q ss_pred             EEEEEcCCCChHHHHH-HHHHHc
Q 023675          104 VIWITGLSGSGKSTLA-CALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~-~~L~~~  125 (279)
                      -+.|.|++||||||++ ..++.+
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~l   38 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHL   38 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHHHH
Confidence            3568899999999764 444333

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=91.12  E-value=0.065  Score=44.22  Aligned_cols=26  Identities=31%  Similarity=0.382  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      .+-.++++|.+-+|||||+|.|.+.-
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            45669999999999999999999965

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.11  E-value=0.039  Score=48.22  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          102 GCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       102 g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      ...+.|||++|.|||+++..|+..+.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~i~   68 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQRIV   68 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHHHH
Confidence            33468999999999999999998763

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.69  E-value=0.07  Score=50.28  Aligned_cols=28  Identities=32%  Similarity=0.378  Sum_probs=25.5

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+.+.|.+.|.||||||+-.+.+.+.|.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999873

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.37  E-value=0.09  Score=43.34  Aligned_cols=38  Identities=37%  Similarity=0.283  Sum_probs=32.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675          103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN  140 (279)
Q Consensus       103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~  140 (279)
                      .+|++.|.=|.||||++--|+..|...+.-+..+|.|.
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~Dp   40 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence            46788999999999999999888877777778899875

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.32  E-value=0.078  Score=49.92  Aligned_cols=28  Identities=32%  Similarity=0.324  Sum_probs=25.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+.+.|.+.|.||||||+-.+.+.+.|.
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4679999999999999999999999873

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.25  E-value=0.058  Score=39.17  Aligned_cols=24  Identities=33%  Similarity=0.194  Sum_probs=18.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Q 023675          101 KGCVIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       101 ~g~~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      ..+...|.+|.|||||+++-.+..
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            456788999999999998755443

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.01  E-value=0.081  Score=50.47  Aligned_cols=28  Identities=32%  Similarity=0.363  Sum_probs=25.5

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+.+.|.+.|.||||||+-.+.|.+.|.
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999884

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=89.57  E-value=0.097  Score=49.41  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=25.6

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+++.|.+.|.||||||+-.+.+.+.|.
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5689999999999999999999999873

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=89.41  E-value=0.091  Score=50.07  Aligned_cols=28  Identities=29%  Similarity=0.284  Sum_probs=25.4

Q ss_pred             cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675          100 QKGCVIWITGLSGSGKSTLACALSQALH  127 (279)
Q Consensus       100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~  127 (279)
                      .+.+.|.|.|.||||||.-.+.|.+.|.
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4679999999999999999999999874

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=88.93  E-value=0.072  Score=43.83  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=21.1

Q ss_pred             ccCCeEEEEEcCCCChHHH--HHHHHHHcc
Q 023675           99 QQKGCVIWITGLSGSGKST--LACALSQAL  126 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKST--l~~~L~~~l  126 (279)
                      +.+|+.+.+.+|+|||||+  +..++...+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~   35 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI   35 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4688999999999999996  334444444

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.93  E-value=0.099  Score=40.66  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=17.8

Q ss_pred             ccCCeEEEEEcCCCChHHHHHH
Q 023675           99 QQKGCVIWITGLSGSGKSTLAC  120 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~  120 (279)
                      +..|.-+.+..|+|||||+++-
T Consensus        37 l~~~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          37 VFSGKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             HTTCSCEEEECSSHHHHHHHHH
T ss_pred             HHcCCCEEEEcCCCCchhHHHH
Confidence            3456778899999999998864

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.69  E-value=0.08  Score=42.34  Aligned_cols=28  Identities=25%  Similarity=0.237  Sum_probs=22.0

Q ss_pred             ccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           99 QQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      +-.|+-+.+++|.|||||+.+-..+-.+
T Consensus        55 ~l~g~~~~i~apTGsGKT~~~~~~~~~~   82 (237)
T d1gkub1          55 ILRKESFAATAPTGVGKTSFGLAMSLFL   82 (237)
T ss_dssp             HHTTCCEECCCCBTSCSHHHHHHHHHHH
T ss_pred             HHCCCCEEEEecCCChHHHHHHHHHHHH
Confidence            3478899999999999998776655444

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=88.29  E-value=0.14  Score=40.98  Aligned_cols=22  Identities=32%  Similarity=0.277  Sum_probs=19.4

Q ss_pred             EEEEcCCCChHHHHHHHHHHcc
Q 023675          105 IWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      ++++|.-.+|||||+..|....
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            6999999999999999996544

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.27  E-value=0.15  Score=39.16  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=16.5

Q ss_pred             EEEEcCCCChHHHHHHHHHHc
Q 023675          105 IWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       105 i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      ..+++|.|||||.++-.++..
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~   46 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEY   46 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHHH
Confidence            458899999999877766654

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=87.24  E-value=0.19  Score=41.62  Aligned_cols=31  Identities=19%  Similarity=0.147  Sum_probs=26.3

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL  126 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l  126 (279)
                      =+.+-+|+.+.|+|++|+|||+|+..+....
T Consensus        61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             TSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             cccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence            3577899999999999999999998766554

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.50  E-value=0.15  Score=42.39  Aligned_cols=30  Identities=20%  Similarity=0.159  Sum_probs=25.6

Q ss_pred             ceeccCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675           96 QLLQQKGCVIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus        96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      =+.+-+|+.+.|+|++|+|||+++..+...
T Consensus        62 l~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          62 LVPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             HSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            357789999999999999999998877644

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.99  E-value=0.19  Score=40.55  Aligned_cols=22  Identities=32%  Similarity=0.273  Sum_probs=19.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHHc
Q 023675          104 VIWITGLSGSGKSTLACALSQA  125 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~~  125 (279)
                      .|+++|..++|||||...|.-.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~   29 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYK   29 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            6899999999999999888643

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.83  E-value=0.28  Score=38.89  Aligned_cols=21  Identities=33%  Similarity=0.347  Sum_probs=18.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 023675          104 VIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      .|+++|.-++|||||+..|..
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            489999999999999998854

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.37  E-value=0.22  Score=42.41  Aligned_cols=21  Identities=33%  Similarity=0.314  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 023675          104 VIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      .|+|+|.-|+|||||+..|..
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            499999999999999999963

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=83.07  E-value=0.23  Score=40.21  Aligned_cols=21  Identities=33%  Similarity=0.308  Sum_probs=18.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHH
Q 023675          104 VIWITGLSGSGKSTLACALSQ  124 (279)
Q Consensus       104 ~i~lvG~sGsGKSTl~~~L~~  124 (279)
                      .|+++|.-++|||||+..|.-
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEEeeCCCCHHHHHHHHHH
Confidence            389999999999999999854