Citrus Sinensis ID: 023705

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MASLATSSFSSLQFLPRPKIPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDALDEQPPMQALFVFDPVHNICCFLHMKWCKRSSCHEYVWVL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccccccHHHccccccEEccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHcccHEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccEEccccccHEEEEEEccccHHHHHHHHHHcccccccEEEEEc
Coil and Loop (DISEMBL)
maslatssfsslqflprpkipqppfsspslllrqrrtTYQFSSLVVSAqndkkstttKEVKKKAEEVEVEVEEELPWIQEKALDLVEFtgsvtqaipgprvgqsklpwilaVPLAYVGVSFVIAFVKTVkkfnspkfkrkklvnkNAMVCKTIDELFqkggdavnppalkglvqktgfSMEDVLRKYIRYALnekpfnpdLVVNLIQLRKASMLDDSQVAEILNEISRRFVrekdedaldeqppmqalfvfdpvhniccflhmkwckrsscheyvwvl
Flexible Loop (DISEMBL)
maslatssfsslqflprpkiPQPPFSSPSLLLRQRRTTYQFSslvvsaqndkkstttkevkkkaeeveveveeelpwiQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTvkkfnspkfkrkklvnknaMVCKTIDELfqkggdavnppALKGLVQKTGFSMEDVLRKYIRYAlnekpfnpDLVVNLIQLRKasmlddsqVAEILNEISRRFVREKDEDALDEQPPMQALFVFDPVHNICCFLHMKWCKRSSCHEYVWVL
Low Complexity Region (SEG)
MASLATSSFSSLQFLPRPKIpqppfsspslllrqrrTTYQFSSLVVSAQNDKKSTTTkevkkkaeeveveveeeLPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVkkfnspkfkrkkLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDALDEQPPMQALFVFDPVHNICCFLHMKWCKRSSCHEYVWVL
Disordered region (IsUnstruct)
************************************************************************EELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFV**************QALFVFDPVHNICCFLHMKWCKRSSCHEYVWV*
Disordered Region (DISOPRED)
**************L*************************************************************WIQEKALDLVEFTGSVTQAIPG**VGQSKLPWILAVPLAYVGVSFVIAFVKTV*****************AMVCKTIDELFQKGGD******LKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDALDEQPPMQALFVFDPVHNICCFLHMKWCKRSSCHEYVWVL
Disordered Region (DISEMBL)
**********SLQFLPRPKIPQPPFSSPSLLLRQRRTTYQFSSLV****************************ELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDALDEQPPMQALFVFDPVHNICCFLHMKWCKRSSCHEYVWVL
Disordered Region (DISPRO)
**S****SFSSLQFLPRPKIP*PPFSSPSLL**************************************EVEEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDALDEQPPMQALFVFDPVHNICCFLHMKWCKRSSCHEYVWVL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLATSSFSSLQFLPRPKIPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDALDEQPPMQALFVFDPVHNICCFLHMKWCKRSSCHEYVWVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
225463793	345	PREDICTED: uncharacterized protein LOC10	0.597	0.481	0.734	7e-67
449458726	340	PREDICTED: uncharacterized protein LOC10	0.769	0.629	0.594	1e-66
356577710	348	PREDICTED: uncharacterized protein LOC10	0.600	0.479	0.730	2e-66
21592521	346	unknown [Arabidopsis thaliana]	0.769	0.618	0.621	6e-66
18415850	346	uncharacterized protein [Arabidopsis tha	0.755	0.606	0.632	2e-65
357439057	422	hypothetical protein MTR_1g039490 [Medic	0.629	0.414	0.670	2e-65
297806925	346	hypothetical protein ARALYDRAFT_487695 [	0.762	0.612	0.633	3e-65
9759348	471	unnamed protein product [Arabidopsis tha	0.575	0.339	0.751	3e-65
115459540	338	Os04g0527800 [Oryza sativa Japonica Grou	0.748	0.615	0.607	1e-64
222629244	338	hypothetical protein OsJ_15539 [Oryza sa	0.748	0.615	0.607	1e-64

>gi|225463793|ref|XP_002268157.1| PREDICTED: uncharacterized protein LOC100250766 [Vitis vinifera] gi|297742717|emb|CBI35351.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (663), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 122/166 (73%), Positives = 142/166 (85%)

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWI+EKALDLVEF+GSV QAIPGPRVG+S  PWILA+PLAY G++FVIAFV+TV+KFNS
Sbjct: 88  LPWIEEKALDLVEFSGSVAQAIPGPRVGRSSFPWILAIPLAYAGITFVIAFVRTVQKFNS 147

Query: 135 PKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
           PK KR+KLVNKNAM+CK+IDE+F  G D     AL GL+QKTGFS E++ RKYIRYALNE
Sbjct: 148 PKQKRRKLVNKNAMLCKSIDEVFLNGRDEELQSALNGLMQKTGFSREEIFRKYIRYALNE 207

Query: 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDALD 240
           KPFNP++V  LIQ RKAS+LDDSQVAEILNEISRR VR+K    +D
Sbjct: 208 KPFNPEMVATLIQFRKASLLDDSQVAEILNEISRRIVRDKGPVVMD 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458726|ref|XP_004147098.1| PREDICTED: uncharacterized protein LOC101212890 [Cucumis sativus] gi|449526688|ref|XP_004170345.1| PREDICTED: uncharacterized protein LOC101227242 [Cucumis sativus]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/237 (59%), Positives = 171/237 (72%), Gaps = 23/237 (9%)

Query: 13  QFLPRP-----KIPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEV 67
           Q L RP     K P   FS  +L  R        S+L+++A   K S +   V K+++  
Sbjct: 16  QLLHRPNSLFSKFPSSTFSPFTLSNR--------STLLLAAAKKKDSDSVPAVAKESKTS 67

Query: 68  EVEV----------EEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYV 117
           +             EEELPW QEKALDLVEF+GSVTQAIPGPRVGQS LPWILAVPLAY+
Sbjct: 68  KSNTVGDEEEFVEVEEELPWYQEKALDLVEFSGSVTQAIPGPRVGQSSLPWILAVPLAYL 127

Query: 118 GVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTG 177
           GV+FVIAFVKTV+KFNSPK KR++ V KNA +C ++DEL +KG D V P AL  +VQKTG
Sbjct: 128 GVTFVIAFVKTVRKFNSPKEKRRRQVTKNAFLCISVDELLEKGRDEVKPEALAEIVQKTG 187

Query: 178 FSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK 234
           FS++ +LRKYIRYALNEKPFNP+LV NLIQLRKAS L+D+QVA+ILNE+SRR  R+K
Sbjct: 188 FSVDQILRKYIRYALNEKPFNPELVANLIQLRKASALEDTQVAQILNEVSRRIERDK 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577710|ref|XP_003556967.1| PREDICTED: uncharacterized protein LOC100804019 [Glycine max]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/167 (73%), Positives = 145/167 (86%)

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWIQEKALDLVEFTGSVTQAIPGPRVG + LPWILA+PL Y G++FVIAFVKTV+KF+S
Sbjct: 95  LPWIQEKALDLVEFTGSVTQAIPGPRVGPTSLPWILAIPLTYAGLTFVIAFVKTVRKFSS 154

Query: 135 PKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
           PK KR++ V+KNA +CK++D+LFQKG D V   ALK +  KTGF +E++LRKYIRYALNE
Sbjct: 155 PKAKRRRQVSKNATLCKSLDDLFQKGRDEVKLDALKQIENKTGFDLEEILRKYIRYALNE 214

Query: 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDALDE 241
           KPFNPD+V +LIQLRKASML+DSQVAEILNEISRR VR+K    +D+
Sbjct: 215 KPFNPDMVADLIQLRKASMLNDSQVAEILNEISRRIVRDKGPIVMDK 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592521|gb|AAM64471.1| unknown [Arabidopsis thaliana]

 Score =  256 bits (655), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 136/219 (62%), Positives = 166/219 (75%), Gaps = 5/219 (2%)

Query: 20  IPQPPFSSPSLLLRQRRTTY-QFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEE---EL 75
           +P+ P  +P   LRQ R  +   S+     Q++  +  T   KK +   E   EE   ++
Sbjct: 25  LPRTPLFAPLPSLRQLRPKHISISAAAPKKQSETVTAPTPAAKKNSSVEEETEEEVEEDM 84

Query: 76  PWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSP 135
           PWIQEKALDLVEFTGSV+QAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV+KF+SP
Sbjct: 85  PWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFSSP 144

Query: 136 KFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK 195
           K +RKKLVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYALNEK
Sbjct: 145 KAQRKKLVNQNAMLCRSIDELLRKDG-TVHSSELKALEQKTEFNMEEILRKYIRYALNEK 203

Query: 196 PFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK 234
           PFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EK
Sbjct: 204 PFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEK 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415850|ref|NP_568200.1| uncharacterized protein [Arabidopsis thaliana] gi|14334822|gb|AAK59589.1| unknown protein [Arabidopsis thaliana] gi|15293203|gb|AAK93712.1| unknown protein [Arabidopsis thaliana] gi|332003935|gb|AED91318.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/223 (63%), Positives = 169/223 (75%), Gaps = 13/223 (5%)

Query: 20  IPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTT--------KEVKKKAEEVEVEV 71
           +P  P  +P   LRQ R  +    + +SA   KK + T        K+     EE E EV
Sbjct: 25  LPLTPLFAPLPSLRQLRPKH----ISISAAAPKKKSETVTAPTPAAKKNSSVEEETEEEV 80

Query: 72  EEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKK 131
           EE++PWIQEKALDLVEFTGSV+QAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV+K
Sbjct: 81  EEDMPWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQK 140

Query: 132 FNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYA 191
           F+SPK +RKKLVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYA
Sbjct: 141 FSSPKAQRKKLVNQNAMLCRSIDELLRKAG-TVHSSELKALEQKTEFNMEEILRKYIRYA 199

Query: 192 LNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK 234
           LNEKPFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EK
Sbjct: 200 LNEKPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEK 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439057|ref|XP_003589805.1| hypothetical protein MTR_1g039490 [Medicago truncatula] gi|355478853|gb|AES60056.1| hypothetical protein MTR_1g039490 [Medicago truncatula]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/185 (67%), Positives = 145/185 (78%), Gaps = 10/185 (5%)

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWIQEKALDLVEFTGSVTQAIPGPRVG + LPWILAVPL Y+G++FVIAFVKTVKKF S
Sbjct: 77  LPWIQEKALDLVEFTGSVTQAIPGPRVGPTSLPWILAVPLGYLGLTFVIAFVKTVKKFTS 136

Query: 135 PKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
           PK +R+KLV KNAM+CK++DEL Q+G D +    LK +  KTGF +E++LRKYIRYALNE
Sbjct: 137 PKAQRRKLVGKNAMLCKSVDELLQRGRDEIKVDDLKAIENKTGFGLEEILRKYIRYALNE 196

Query: 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKD----------EDALDEQPP 244
           KPFNPD+V +LIQLR+AS L DSQ AEILNEISRR VR+K           E     +  
Sbjct: 197 KPFNPDVVADLIQLRRASSLSDSQAAEILNEISRRIVRDKGPIVMNKSGYTEKGFKRKLA 256

Query: 245 MQALF 249
           +QALF
Sbjct: 257 VQALF 261

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806925|ref|XP_002871346.1| hypothetical protein ARALYDRAFT_487695 [Arabidopsis lyrata subsp. lyrata] gi|297317183|gb|EFH47605.1| hypothetical protein ARALYDRAFT_487695 [Arabidopsis lyrata subsp. lyrata]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 140/221 (63%), Positives = 167/221 (75%), Gaps = 9/221 (4%)

Query: 20  IPQPPF--SSPSLLLRQRRTTY-QFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEE--- 73
           +P+ P   S PSL  RQ R  +   S+     Q+D  +T T   KK +   E   EE   
Sbjct: 25  LPRTPLFVSLPSL--RQLRPKHPSISAAAPKKQSDTVTTPTPTAKKNSSVEEETEEEVEE 82

Query: 74  ELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFN 133
           ++ WIQEKALDLVEFTGSVTQAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV+KF+
Sbjct: 83  DMLWIQEKALDLVEFTGSVTQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFS 142

Query: 134 SPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALN 193
           SPK +RKKLVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYALN
Sbjct: 143 SPKAQRKKLVNQNAMLCRSIDELLRKDG-TVHSSELKALEQKTEFNMEEILRKYIRYALN 201

Query: 194 EKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK 234
           EKPFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EK
Sbjct: 202 EKPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEK 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759348|dbj|BAB10003.1| unnamed protein product [Arabidopsis thaliana]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 121/161 (75%), Positives = 142/161 (88%), Gaps = 1/161 (0%)

Query: 74  ELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFN 133
           ++PWIQEKALDLVEFTGSV+QAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV+KF+
Sbjct: 185 DMPWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFS 244

Query: 134 SPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALN 193
           SPK +RKKLVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYALN
Sbjct: 245 SPKAQRKKLVNQNAMLCRSIDELLRKAG-TVHSSELKALEQKTEFNMEEILRKYIRYALN 303

Query: 194 EKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK 234
           EKPFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EK
Sbjct: 304 EKPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEK 344

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115459540|ref|NP_001053370.1| Os04g0527800 [Oryza sativa Japonica Group] gi|38344450|emb|CAE05656.2| OSJNBa0038O10.22 [Oryza sativa Japonica Group] gi|113564941|dbj|BAF15284.1| Os04g0527800 [Oryza sativa Japonica Group] gi|116310971|emb|CAH67907.1| OSIGBa0115K01-H0319F09.13 [Oryza sativa Indica Group] gi|215701494|dbj|BAG92918.1| unnamed protein product [Oryza sativa Japonica Group] gi|218195250|gb|EEC77677.1| hypothetical protein OsI_16722 [Oryza sativa Indica Group]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 130/214 (60%), Positives = 170/214 (79%), Gaps = 6/214 (2%)

Query: 27  SPSLLLRQRRTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEEELPWIQEKALDLV 86
           +P L+ R +R   +      +A   ++     +V K+  + EVEVEEE+PWIQ+KALDLV
Sbjct: 46  TPLLVARAKRPGSR------TAAASRQPANPSDVPKREADEEVEVEEEMPWIQDKALDLV 99

Query: 87  EFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKN 146
           EFTG+VTQAIPGPRVG S +PW+LAVPLAYVGVSFV+A V+TV++F SP+ ++K+ V+KN
Sbjct: 100 EFTGTVTQAIPGPRVGSSPVPWLLAVPLAYVGVSFVLAVVRTVRRFTSPRTQKKRRVSKN 159

Query: 147 AMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLI 206
             + K++DELFQKG +AV+ PAL+ L++KTGF M+DV+RKYIRY LNEKPFNPD+VV+LI
Sbjct: 160 IFLLKSLDELFQKGREAVDFPALQELMEKTGFDMDDVVRKYIRYTLNEKPFNPDVVVDLI 219

Query: 207 QLRKASMLDDSQVAEILNEISRRFVREKDEDALD 240
            LRKASML+D++VAEILNEISRR VREK    +D
Sbjct: 220 HLRKASMLEDAEVAEILNEISRRIVREKGPVVMD 253

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222629244|gb|EEE61376.1| hypothetical protein OsJ_15539 [Oryza sativa Japonica Group]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 130/214 (60%), Positives = 170/214 (79%), Gaps = 6/214 (2%)

Query: 27  SPSLLLRQRRTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEEELPWIQEKALDLV 86
           +P L+ R +R   +      +A   ++     +V K+  + EVEVEEE+PWIQ+KALDLV
Sbjct: 46  TPLLVARAKRPGSR------TAAASRQPANPSDVPKREADEEVEVEEEMPWIQDKALDLV 99

Query: 87  EFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKN 146
           EFTG+VTQAIPGPRVG S +PW+LAVPLAYVGVSFV+A V+TV++F SP+ ++K+ V+KN
Sbjct: 100 EFTGTVTQAIPGPRVGSSPVPWLLAVPLAYVGVSFVLAVVRTVRRFTSPRTQKKRRVSKN 159

Query: 147 AMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLI 206
             + K++DELFQKG +AV+ PAL+ L++KTGF M+DV+RKYIRY LNEKPFNPD+VV+LI
Sbjct: 160 IFLLKSLDELFQKGREAVDFPALQELMEKTGFDMDDVVRKYIRYTLNEKPFNPDVVVDLI 219

Query: 207 QLRKASMLDDSQVAEILNEISRRFVREKDEDALD 240
            LRKASML+D++VAEILNEISRR VREK    +D
Sbjct: 220 HLRKASMLEDAEVAEILNEISRRIVREKGPVVMD 253

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2159532	346	AT5G08540 "AT5G08540" [Arabido	0.571	0.459	0.706	7.8e-55

TAIR|locus:2159532 AT5G08540 "AT5G08540" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 113/160 (70%), Positives = 130/160 (81%)

Query:    75 LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVXXXXX 134
             +PWIQEKALDLVEFTGSV+QAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV     
Sbjct:    84 MPWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFSS 143

Query:   135 XXXXXXXLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
                    LVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYALNE
Sbjct:   144 PKAQRKKLVNQNAMLCRSIDELLRKAG-TVHSSELKALEQKTEFNMEEILRKYIRYALNE 202

Query:   195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK 234
             KPFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EK
Sbjct:   203 KPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEK 242


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      278       233   0.00086  113 3  11 22  0.38    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  178 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.91u 0.12s 18.03t   Elapsed:  00:00:01
  Total cpu time:  17.91u 0.12s 18.03t   Elapsed:  00:00:01
  Start:  Fri May 10 16:22:46 2013   End:  Fri May 10 16:22:47 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002604001 SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (345 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
KOG0154	573	consensus RNA-binding protein RBM5 and related pro	97.94
KOG4509	247	consensus Uncharacterized conserved protein [Funct	89.26
TIGR02395	429	rpoN_sigma RNA polymerase sigma-54 factor. A sigma	88.36
PF04552	160	Sigma54_DBD: Sigma-54, DNA binding domain; InterPr	88.22
PRK05932	455	RNA polymerase factor sigma-54; Reviewed	84.53
COG1508	444	RpoN DNA-directed RNA polymerase specialized sigma	83.55
PLN02777	167	photosystem I P subunit (PSI-P)	82.58

>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]

Probab=97.94  E-value=6.7e-07  Score=86.46  Aligned_cols=191  Identities=16%  Similarity=0.069  Sum_probs=158.0

Q ss_pred             hhhHHHHhcchhhHHhhhhhhhhccccccccCCCcCCCCCchhHHhhhhHhhhhhhhhhhhhhhhhcCChhhhhhhhhcc
Q 023705           66 EVEVEVEEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNK  145 (278)
Q Consensus        66 e~e~e~e~e~~wiqekaldlveftG~vtQAIPGPRVg~s~lPwLlAlPLAylG~TFviA~vRtvrK~~SPraKRkR~VNK  145 (278)
                      +.++..+++.+|+++++.+-++|+....|.+.+++...+-++|-++-.+++.|.+.+..++....+....|.+.+....=
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~d~~~s~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~i~q~~~~~~~~~  314 (573)
T KOG0154|consen  235 ETDEYYEDPETSVYYDTDSGLYFNDASSQYLYGDDEQSDYFYAKLSPSLPEFGVPNALQKKKKKEKPKIAQVKTKDMEKW  314 (573)
T ss_pred             cccCceecCCccceeeccccceeccccccccccCCCcceeeecccccccccccccHHHhhhcccccccchhhhhhhHHhh
Confidence            55666678899999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             hhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhc--CCCcHHHHHHH
Q 023705          146 NAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKAS--MLDDSQVAEIL  223 (278)
Q Consensus       146 NamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas--~L~D~evaEiL  223 (278)
                      ++++.+..|+|.-.. ...+.....++....|.....|..+|..|..+|+.++|+.+...+|.+...  +|.+...+..-
T Consensus       315 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (573)
T KOG0154|consen  315 AKYLSKEKDSYLLSS-TPAHEGVHTGVNTSKGAEPGPVKKEKKLYKKKEKFVNPELSKRGSHVSPSKNLKLIDVSTGLSD  393 (573)
T ss_pred             hhhhhcccccccccc-cccceecccccccccccCchhhhhhccccccchhccCccccccccccCccccccccccccCCCc
Confidence            899998888876554 447888889999999999999999999999999999999999999998863  44444444444


Q ss_pred             HHHHHhhh---hhcCccccccc-------hhhhhhcccCCccch
Q 023705          224 NEISRRFV---REKDEDALDEQ-------PPMQALFVFDPVHNI  257 (278)
Q Consensus       224 nE~srRiv---~~~G~vmmn~~-------~avqalf~~~~~~~~  257 (278)
                      ++.....-   -+++..+..+-       .++|.-|..-.+|+.
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~s~~h~~  437 (573)
T KOG0154|consen  394 SELEQEKSLKLVDKLKLMCLLCRRQFPSKGSLQKHLTPSDLHKE  437 (573)
T ss_pred             hHhhhhhhhhccccchhhhhhhhccCCchHHHhhhcccccchhh
Confidence            44444444   33444444443       777888887777754

>KOG4509 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.26  E-value=0.69  Score=42.73  Aligned_cols=79  Identities=18%  Similarity=0.206  Sum_probs=63.5

Q ss_pred             hhhhhhhhhhhhhhcCChhhhhhhhhcchhhHHhhHHHHHhc-CCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 023705          118 GVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQK-GGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKP  196 (278)
Q Consensus       118 G~TFviA~vRtvrK~~SPraKRkR~VNKNamLvkSLDeyFp~-gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~  196 (278)
                      ||-++.-..|+.+-=|.-|-|=+--+.+-..-++.|.+|+.+ .-++-+..-.|--++.||||-+-||++|..=.|+|--
T Consensus        41 GIdLi~e~lk~~~ldna~R~~i~~k~s~Ym~ka~diekYLdqekEdgk~~eQ~KI~~NaTG~SY~~iF~e~~dd~l~~V~  120 (247)
T KOG4509|consen   41 GIDLIAEALKGMKLDNADRCKIMAKFSDYMDKAADIEKYLDQEKEDGKTHEQIKIAANATGFSYARIFGECCDDRLREVH  120 (247)
T ss_pred             hHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhccCcccHHHHHHHHHhhhhheee
Confidence            888888888887766666666666667777778889999985 5566677777778899999999999999998888753

>TIGR02395 rpoN_sigma RNA polymerase sigma-54 factor

Probab=88.36  E-value=1.6  Score=42.40  Aligned_cols=89  Identities=27%  Similarity=0.483  Sum_probs=69.9

Q ss_pred             hHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHH----HHH---------HHHhcC--------CCCChHHHHHHH
Q 023705          148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLR----KYI---------RYALNE--------KPFNPDLVVNLI  206 (278)
Q Consensus       148 mLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~R----KYi---------rY~LnE--------r~F~pd~VaDLi  206 (278)
                      .||+.=.+||..|...+.+=.||.+..++|.+-.-|=|    ||+         +|....        ...+.+.|-+.|
T Consensus       300 ~Iv~~Q~~Ff~~G~~~LkPLtlkdiA~~lglheSTVSRav~~Kyi~tp~Gi~~lk~FFs~~~~~~~~g~~~S~~~Ik~~I  379 (429)
T TIGR02395       300 AIVEHQKDFFLGGPAALKPLTLREVAEELGLHESTISRAINNKYLQTPRGVFELKYFFSRGVQTDSGEGEVSSTAIKALI  379 (429)
T ss_pred             HHHHHHHHHHhcCcccCcCCcHHHHHHHhCCCccchhhhhcCceEecCCceEEHHHhcCCccCCCCCCCccCHHHHHHHH
Confidence            35555578999999999999999999999999998887    785         566542        236777776665


Q ss_pred             HH-----HhhcCCCcHHHHHHHHH----HHHhhhhhcCc
Q 023705          207 QL-----RKASMLDDSQVAEILNE----ISRRFVREKDE  236 (278)
Q Consensus       207 ~L-----rkas~L~D~evaEiLnE----~srRiv~~~G~  236 (278)
                      +-     -+.--|||.+++++|.+    ||||-|-||=.
T Consensus       380 ~~lI~~E~~~~PlSD~~I~~~L~~~Gi~IaRRTVaKYRe  418 (429)
T TIGR02395       380 KELIAAEDKRKPLSDQKIAELLKEKGIKIARRTVAKYRE  418 (429)
T ss_pred             HHHHHhcCCCCCCCHHHHHHHHHhcCCCeehHHHHHHHH
Confidence            52     23456999999999985    89999999954

A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations

>PF04552 Sigma54_DBD: Sigma-54, DNA binding domain; InterPro: IPR007634 This DNA-binding domain is based on peptide fragmentation data

Probab=88.22  E-value=0.32  Score=41.79  Aligned_cols=88  Identities=27%  Similarity=0.457  Sum_probs=20.8

Q ss_pred             hHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHH----HHHHH---------HhcCC-------CCChHHHHHHH-
Q 023705          148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLR----KYIRY---------ALNEK-------PFNPDLVVNLI-  206 (278)
Q Consensus       148 mLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~R----KYirY---------~LnEr-------~F~pd~VaDLi-  206 (278)
                      +||+.=.+||..|...+.+=-++.+...+|++..-|=|    ||+..         .+.-.       .++.+.|-+.| 
T Consensus        31 ~iv~~Q~~ff~~g~~~l~PLt~~~iA~~lgl~~STVSRav~~Ky~~t~~Gi~plk~fF~~~~~~~~~~~~S~~~ik~~i~  110 (160)
T PF04552_consen   31 AIVERQKDFFLGGPGALKPLTMKDIADELGLHESTVSRAVKNKYIQTPRGIFPLKDFFSRSVSSGSGEEFSSEAIKARIK  110 (160)
T ss_dssp             ------------------------------------------------------S-----SS--SS-SS---TTH-HHHH
T ss_pred             HHHHHHHHHHhcCcccCcCCCHHHHHHHhCCCHhHHHHHHcCceeecCCeeeeHHHhccccccCCCCcccHHHHHHHHHH
Confidence            56777788999888899999999999999999998877    88753         22211       13444454333 


Q ss_pred             ---HH-HhhcCCCcHHHHHHHH----HHHHhhhhhcC
Q 023705          207 ---QL-RKASMLDDSQVAEILN----EISRRFVREKD  235 (278)
Q Consensus       207 ---~L-rkas~L~D~evaEiLn----E~srRiv~~~G  235 (278)
                         += -+.-.|||++++++|+    .+|||-|-||=
T Consensus       111 ~lI~~Ed~~~PlSD~~i~~~L~~~gi~isRRTVaKYR  147 (160)
T PF04552_consen  111 ELIEEEDKKKPLSDQEIAELLKEEGIKISRRTVAKYR  147 (160)
T ss_dssp             HHHTTS-TTS---HHHHHHHHTTTTS---HHHHHHHH
T ss_pred             HHHHhcCCCCCCCHHHHHHHHHHcCCCccHHHHHHHH
Confidence               32 2346899999999998    58999999984

This domain is proximal to DNA in the promoter/holoenzyme complex. Furthermore, this region contains a putative helix-turn-helix motif. At the C terminus, there is a highly conserved region known as the RpoN box and is the signature of the sigma-54 proteins [].; PDB: 2AHQ_A 2O9L_A 2O8K_A.

>PRK05932 RNA polymerase factor sigma-54; Reviewed

Probab=84.53  E-value=2.4  Score=41.56  Aligned_cols=89  Identities=27%  Similarity=0.505  Sum_probs=68.0

Q ss_pred             hHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHH----HHH---------HHHhcCC-------CCChHHHHHHHH
Q 023705          148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLR----KYI---------RYALNEK-------PFNPDLVVNLIQ  207 (278)
Q Consensus       148 mLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~R----KYi---------rY~LnEr-------~F~pd~VaDLi~  207 (278)
                      .||+.=.+||..|...+.+=.||.+..+.|+.-.-|=|    ||+         +|.....       ..+.+.|-+.|+
T Consensus       325 ~Iv~~Q~~Ff~~G~~~LkPLtlkdvAe~lglheSTVSRav~~Kyv~tp~Gi~~lk~FFs~~~~~~~g~~~S~~~Ik~~Ik  404 (455)
T PRK05932        325 CIVEQQRDFFEHGEEALKPLVLKDIAEELGMHESTISRATTNKYMATPRGIFELKYFFSSAVSTDGGGEASSTAIRALIK  404 (455)
T ss_pred             HHHHHHHHHHhCCcccCcCccHHHHHHHhCCCccchhhhhcCceeecCCceEEHHHhcccccCCCCCccccHHHHHHHHH
Confidence            34555578999999999999999999999999998887    775         5555422       245566665554


Q ss_pred             H-----HhhcCCCcHHHHHHHHH----HHHhhhhhcCc
Q 023705          208 L-----RKASMLDDSQVAEILNE----ISRRFVREKDE  236 (278)
Q Consensus       208 L-----rkas~L~D~evaEiLnE----~srRiv~~~G~  236 (278)
                      -     =+.--|||.+++++|.+    ||||-|-||=.
T Consensus       405 ~lI~~Ed~~~PlSD~~I~~~L~~~Gi~IaRRTVaKYRe  442 (455)
T PRK05932        405 KLIAAENPKKPLSDSKIAELLKEQGIDVARRTVAKYRE  442 (455)
T ss_pred             HHHHhcCCCCCCCHHHHHHHHHHcCCCeehHHHHHHHH
Confidence            2     12356999999999986    89999999954

>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]

Probab=83.55  E-value=3.4  Score=41.27  Aligned_cols=99  Identities=27%  Similarity=0.474  Sum_probs=78.0

Q ss_pred             hhhhhhcch-hhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHH----HHH---------HHH----hcCC----
Q 023705          138 KRKKLVNKN-AMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLR----KYI---------RYA----LNEK----  195 (278)
Q Consensus       138 KRkR~VNKN-amLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~R----KYi---------rY~----LnEr----  195 (278)
                      +|++++=|= .++|+-=++||..|..++.+=.||.+..+.|..-.-|-|    ||+         +|.    +...    
T Consensus       301 qR~~TLlkV~~~Iv~~Q~~Ff~~g~~~l~PL~LrdvA~~i~~HESTISRai~nKy~~tprG~feLK~FFs~~i~s~~gg~  380 (444)
T COG1508         301 QREETLLKVAEEIVEYQKAFFEGGEEALKPLVLRDVADEIGMHESTISRAITNKYLATPRGLFELKYFFSSSLASSEGGE  380 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcccCCcccHHHHHHHhCccHHHHHHHHhcccccCCcceeeHHHHHHHhccCCCCCc
Confidence            455554442 367777789999999999999999999999999999988    775         443    3444    


Q ss_pred             CCChHHHHHHHH-----HHhhcCCCcHHHHHHHHH----HHHhhhhhcCc
Q 023705          196 PFNPDLVVNLIQ-----LRKASMLDDSQVAEILNE----ISRRFVREKDE  236 (278)
Q Consensus       196 ~F~pd~VaDLi~-----Lrkas~L~D~evaEiLnE----~srRiv~~~G~  236 (278)
                      ..+-+.|-++|.     =++..-|||+.++++|-|    +|||-|-||=.
T Consensus       381 ~~S~~~Ik~~Ik~lI~~E~~~~pLSD~kIa~lLkekGi~iARRTVAKYRe  430 (444)
T COG1508         381 ASSTEAIKALIKKLIEAEDKKKPLSDSKIAELLKEKGIDVARRTVAKYRE  430 (444)
T ss_pred             cccHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHcCCchhHHhHHHHHH
Confidence            578878877764     245568999999999997    79999999954

>PLN02777 photosystem I P subunit (PSI-P)

Probab=82.58  E-value=0.99  Score=40.18  Aligned_cols=27  Identities=41%  Similarity=0.621  Sum_probs=16.4

Q ss_pred             Ccccccccccc--------------ccccCCCCCCCCCCCC
Q 023705            1 MASLATSSFSS--------------LQFLPRPKIPQPPFSS   27 (278)
Q Consensus         1 ~~~~~~~~~~~--------------~q~~~~p~~p~~~~~~   27 (278)
                      |++|.++|++|              .|.+.-|.+|||+-.+
T Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~lp~lppp~~~~   41 (167)
T PLN02777          1 MTPLSISSSSTLIDSKAPRSSAAASPQCVSLPTLPPPPVQS   41 (167)
T ss_pred             CCccccccccccccCCCCCcCcccCCccccCCCCCCCCccc
Confidence            67777766655              4566666666654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
4aq3_A	169	Apoptosis regulator BCL-2, BCL-2-like protein 1; c	89.03
3sp7_A	172	BCL-2-like protein 1; apoptosis regulator-inhibito	83.41
3ilc_A	197	BCL-2-like protein 1; apoptosis, BH3 domain, alter	82.44
2a19_A	175	EIF-2- alpha, eukaryotic translation initiation fa	81.06

>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*

Probab=89.03  E-value=0.18  Score=42.05  Aligned_cols=67  Identities=19%  Similarity=0.317  Sum_probs=39.5

Q ss_pred             HhCCChHHHHHHHHHHHhcCCCCChHHHHHHH--HHHhhcCCCcHHHHHHHHHHHHhhhhhcCcccccc
Q 023705          175 KTGFSMEDVLRKYIRYALNEKPFNPDLVVNLI--QLRKASMLDDSQVAEILNEISRRFVREKDEDALDE  241 (278)
Q Consensus       175 KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi--~Lrkas~L~D~evaEiLnE~srRiv~~~G~vmmn~  241 (278)
                      .+||+.-+|+++||.|.|+.+-+.-....+=+  .-....+-..++|.+.|+.++.-+-++|....-|+
T Consensus         9 ~~~~~~r~lv~~yi~~kL~q~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~Lr~igdele~~~~~~f~~~   77 (169)
T 4aq3_A            9 RTGYDNREIVMKYIHYKLSQRGYEWDAGDDVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEM   77 (169)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTCCCC-------------------CHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHcCCCcCcccccccccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            57999999999999999999976543222111  01112345677899999999988888887655444

>3sp7_A BCL-2-like protein 1; apoptosis regulator-inhibitor complex; HET: 03B; 1.40A {Homo sapiens} PDB: 2lp8_A* 2lpc_A 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 4ehr_A* 3spf_A* 2pon_B 3r85_A 2p1l_A 4a1u_A* 2yj1_A 2yq7_A 2yq6_A 3fdm_A ...

Probab=83.41  E-value=1.2  Score=37.22  Aligned_cols=64  Identities=16%  Similarity=0.180  Sum_probs=44.3

Q ss_pred             CCChHHHHHHHHHHHhcCCCCChHHHH--HHHHHHh--hcCCCcHHHHHHHHHHHHhhhhhcCccccccc
Q 023705          177 GFSMEDVLRKYIRYALNEKPFNPDLVV--NLIQLRK--ASMLDDSQVAEILNEISRRFVREKDEDALDEQ  242 (278)
Q Consensus       177 GFs~~EV~RKYirY~LnEr~F~pd~Va--DLi~Lrk--as~L~D~evaEiLnE~srRiv~~~G~vmmn~~  242 (278)
                      +++.-|+.+.||.|.|.-+-|......  |.  -+.  ..+-.-++|...|+.++.-|-++|.+..-|+.
T Consensus         5 ~~~~r~lv~dyI~yrL~~~g~~~~~~~~~~~--~~~~~~~~~~~~~v~~~Lr~~gdelE~~~~~~f~~~~   72 (172)
T 3sp7_A            5 SQSNRELVVDFLSYKLSQKGYSWSQFSDVEE--NRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLT   72 (172)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCGGGTCC--------------CHHHHHHHHHHHHHHHHHHHGGGCSCHH
T ss_pred             chhhhHHHHHHHHHHHhhCCCCCcccccccc--ccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            456689999999999999988764321  11  121  23345578999999999999999988766654

>3ilc_A BCL-2-like protein 1; apoptosis, BH3 domain, alternative splicing, cytoplasm, membrane, mitochondrion, transmembrane; 1.64A {Mus musculus} PDB: 3ihd_A 2bzw_A 1pq1_A 1pq0_A 3ihc_A 3iih_A 1af3_A 3ihf_A 3ilb_A 3iig_A 3ihe_A

Probab=82.44  E-value=0.55  Score=40.75  Aligned_cols=62  Identities=16%  Similarity=0.225  Sum_probs=41.8

Q ss_pred             ChHHHHHHHHHHHhcCCCCChHHHHH--------------------------------------------HHHHHhhcCC
Q 023705          179 SMEDVLRKYIRYALNEKPFNPDLVVN--------------------------------------------LIQLRKASML  214 (278)
Q Consensus       179 s~~EV~RKYirY~LnEr~F~pd~VaD--------------------------------------------Li~Lrkas~L  214 (278)
                      +--||+-|||.|+|-.|-+.-....|                                            ...++..+. 
T Consensus         5 ~~~~~v~~~~~~kls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (197)
T 3ilc_A            5 SNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEAERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIP-   83 (197)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCTTCC-----------------------------------------------------C-
T ss_pred             chHHHHHHHHHHHhhcCCCCccccCccccccccccccccccccccccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCc-
Confidence            44699999999999888776533332                                            112222222 


Q ss_pred             CcHHHHHHHHHHHHhhhhhcCccccccc
Q 023705          215 DDSQVAEILNEISRRFVREKDEDALDEQ  242 (278)
Q Consensus       215 ~D~evaEiLnE~srRiv~~~G~vmmn~~  242 (278)
                       -++|+..|++++.-+-++|.+..-|+.
T Consensus        84 -~~~V~~~Lr~lGdElE~~~~~~F~~m~  110 (197)
T 3ilc_A           84 -MAAVKQALREAGDEFELRARRAFSDLT  110 (197)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence             358999999999999999988776654

>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A

Probab=81.06  E-value=1.9  Score=35.77  Aligned_cols=65  Identities=9%  Similarity=-0.001  Sum_probs=45.3

Q ss_pred             CchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHH---HHhhcCCCcHHHHHHHHHHHHh
Q 023705          165 NPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ---LRKASMLDDSQVAEILNEISRR  229 (278)
Q Consensus       165 ~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~---Lrkas~L~D~evaEiLnE~srR  229 (278)
                      -.+.++.+..+.|++.+|+..+..|++.++-.=--++....+.   .=..++++|++++++|.++++|
T Consensus       107 v~g~V~~i~~~~G~~~e~~~~~~~~~l~~~~g~~~~af~~a~~~~~~l~~~~~~~~~~~~~l~~~~~~  174 (175)
T 2a19_A          107 VHSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIIDETVWEGIEPPSKDVLDELKNYISK  174 (175)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHSSHHHHHHHHHHCGGGGTTCCCSCHHHHHHHHHHHCC
T ss_pred             ceEEEEEchhhcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhCChhhhhhcCCCcHHHHHHHHHHHhc
Confidence            3788899999999999999888888886553221333333331   1223566678999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	278
d1g5ma_	164	Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}	93.12
d2f2ab1	107	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s	90.02
d1r4wa_	221	Mitochondrial class kappa glutathione S-transferas	84.03
d1tqna_	472	Mammalian cytochrome P450 3a4 {Human (Homo sapiens	83.1
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	82.3

>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Membrane and cell surface proteins and peptides
fold: Toxins' membrane translocation domains
superfamily: Bcl-2 inhibitors of programmed cell death
family: Bcl-2 inhibitors of programmed cell death
domain: Bcl-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.01  Score=47.34  Aligned_cols=68  Identities=19%  Similarity=0.306  Sum_probs=43.2

Q ss_pred             HhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHH--HhhcCCCcHHHHHHHHHHHHhhhhhcCccccccc
Q 023705          175 KTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQL--RKASMLDDSQVAEILNEISRRFVREKDEDALDEQ  242 (278)
Q Consensus       175 KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~L--rkas~L~D~evaEiLnE~srRiv~~~G~vmmn~~  242 (278)
                      .+||+..||++.||.|.|+.+-|.-....|...-  ..-.+-..++|++.|+.++..+=++|....-||.
T Consensus         4 ~~~~~~Relv~dyI~yrL~q~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~Lr~vgdele~~~~~~f~~m~   73 (164)
T d1g5ma_           4 RTGYDNREIVMKYIHYKLSQRGYEWDAGDDVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEMS   73 (164)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTTCCCCCTTTCCSCSCSSCSCCSSSSSHHHHHHHHHHHHHHHHCSSSTGGG
T ss_pred             ccccchHHHHHHHHHHHHhccCCCccCCCccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999887642211111000  1113444556777777777777777666555543

>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: GatB/YqeY motif
superfamily: GatB/YqeY motif
family: GatB/GatE C-terminal domain-like
domain: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.02  E-value=0.77  Score=33.19  Aligned_cols=86  Identities=19%  Similarity=0.372  Sum_probs=54.4

Q ss_pred             hhhhhhhhhcc------hhhHH---hhHHHHHhc-CCCCCCchHHHHHHHHhCCChHHHHHHHHHH---HhcCCCCChHH
Q 023705          135 PKFKRKKLVNK------NAMVC---KTIDELFQK-GGDAVNPPALKGLVQKTGFSMEDVLRKYIRY---ALNEKPFNPDL  201 (278)
Q Consensus       135 PraKRkR~VNK------NamLv---kSLDeyFp~-gRdal~~gvLk~L~~KTGFs~~EV~RKYirY---~LnEr~F~pd~  201 (278)
                      |..||+|.+++      .+.+.   ..+.+||.+ -...-++      +.-.+|=..|+++ |+..   .+.+-+++|+.
T Consensus         3 P~~k~~R~~~~ygL~~~da~~L~~~~~l~~~FE~~~~~~~~~------k~~aNwl~~el~~-~ln~~~~~i~~~~i~~~~   75 (107)
T d2f2ab1           3 PDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADV------KLTSNWLMGGVNE-YLNKNQVELLDTKLTPEN   75 (107)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHTSSHHHHHHHHHHHTTTCCH------HHHHHHHHTHHHH-HHHTTTCCTTTSSCCHHH
T ss_pred             hHHHHHHHHHHcCcCHHHHHHHHccHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHH-HHHhcCCccccCCcCHHH
Confidence            77888888876      23332   457788876 2222222      1112222344443 2211   12344799999


Q ss_pred             HHHHHHHHhhcCCCcHHHHHHHHHHH
Q 023705          202 VVNLIQLRKASMLDDSQVAEILNEIS  227 (278)
Q Consensus       202 VaDLi~Lrkas~L~D~evaEiLnE~s  227 (278)
                      +++||.|=..--+|....++||.++-
T Consensus        76 la~Li~lv~~g~Is~~~aK~vl~~~~  101 (107)
T d2f2ab1          76 LAGMIKLIEDGTMSSKIAKKVFPELA  101 (107)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCccHHHHHHHHHHHH
Confidence            99999999999999999999998764

>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Mitochondrial class kappa glutathione S-transferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.03  E-value=2.2  Score=31.06  Aligned_cols=98  Identities=12%  Similarity=0.153  Sum_probs=73.9

Q ss_pred             hhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 023705          146 NAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNE  225 (278)
Q Consensus       146 NamLvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE  225 (278)
                      ..++..-...||..|.+--+..+|..+..+.|++..+...                        ....++|.++++.|.+
T Consensus       114 ~~~~~~l~~a~~~~g~di~d~~~l~~~a~~~gl~~~~~~~------------------------~~~~~~~~~~k~~l~~  169 (221)
T d1r4wa_         114 EKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQH------------------------LLNKISTELVKSKLRE  169 (221)
T ss_dssp             HHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHH------------------------HHTTTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCcccchHHHHHHHHHhCcccccccc------------------------ccccccCHHHHHHHHH
Confidence            3566666788999999999999999999999999876532                        1234567888888876


Q ss_pred             HHHhhhhh--cC--ccccccchhhhhhcccCCccchhhhhhhcccc
Q 023705          226 ISRRFVRE--KD--EDALDEQPPMQALFVFDPVHNICCFLHMKWCK  267 (278)
Q Consensus       226 ~srRiv~~--~G--~vmmn~~~avqalf~~~~~~~~~~~~~~~~~~  267 (278)
                      --++..+.  +|  +.++|-...-+..||.|-.+-+.=+|.-.|+.
T Consensus       170 ~~~~A~~~GvfGvPtfvi~~~~~~e~f~G~Drl~~l~~~L~~~~~~  215 (221)
T d1r4wa_         170 TTGAACKYGAFGLPTTVAHVDGKTYMLFGSDRMELLAYLLGEKWMG  215 (221)
T ss_dssp             HHHHHHHTTCCSSCEEEEEETTEEEEEESTTCHHHHHHHHTCCCCC
T ss_pred             HHHHHHHCCCeECCEEEEccCCCcceeecccCHHHHHHHHhcccCC
Confidence            66655544  23  56677656667899999999998888888763

>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Mammalian cytochrome P450 3a4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.10  E-value=0.48  Score=37.63  Aligned_cols=142  Identities=13%  Similarity=0.170  Sum_probs=71.1

Q ss_pred             ccCCCcCCCCCchhHHhhhhHhhhhhhhhhhhhhhhhcCChhhhhhhhhcchhhHH---hhHHHHHhcCCCCCCch----
Q 023705           95 AIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVC---KTIDELFQKGGDAVNPP----  167 (278)
Q Consensus        95 AIPGPRVg~s~lPwLlAlPLAylG~TFviA~vRtvrK~~SPraKRkR~VNKNamLv---kSLDeyFp~gRdal~~g----  167 (278)
                      .||||+    .+||||.+.- |.. .+...+-+..+||.+-  =|-+.-+++..++   +.+.+.|.++......+    
T Consensus        10 ~iPGP~----~~P~iG~~~~-~~~-~~~~~~~~~~~kyG~i--~~~~l~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~   81 (472)
T d1tqna_          10 GIPGPT----PLPFLGNILS-YHK-GFCMFDMECHKKYGKV--WGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPF   81 (472)
T ss_dssp             TCCCCC----CBTTTBTGGG-GGG-CHHHHHHHHHHHHCSE--EEEEETTEEEEEECCHHHHHHHHTTTTTTTCCBCCCC
T ss_pred             CCCCCC----CcCceeEHHH-hhC-CHHHHHHHHHHHhCCE--EEEEECCeeEEEECCHHHHHHHHhcCCcccccCCccc
Confidence            589996    5899986533 332 4444555777787642  1233345554444   44555555433222111    


Q ss_pred             -HHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCccccc------
Q 023705          168 -ALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKDEDALD------  240 (278)
Q Consensus       168 -vLk~L~~KTGFs~~EV~RKYirY~LnEr~F~pd~VaDLi~Lrkas~L~D~evaEiLnE~srRiv~~~G~vmmn------  240 (278)
                       ...-+..=-.++..|..|++ |=.++ ..|+++.+..+..+.      +.++.+.++...+.. ...+++-+.      
T Consensus        82 ~~~~~~~~~i~~~~g~~~~~~-R~~~~-~~~~~~~l~~~~~~~------~~~~~~~~~~l~~~~-~~~~~~dl~~~~~~~  152 (472)
T d1tqna_          82 GPVGFMKSAISIAEDEEWKRL-RSLLS-PTFTSGKLKEMVPII------AQYGDVLVRNLRREA-ETGKPVTLKDVFGAY  152 (472)
T ss_dssp             SCCGGGGGSTTTCCHHHHHHH-HHHTT-GGGSHHHHHTTHHHH------HHHHHHHHHHHHHHH-HHSSCEEHHHHHHHH
T ss_pred             ccccccCCceeccCcHHHHHh-hhhcC-ccccchhhhcccchh------hhhhhcccccccccc-cccccchhhhhhhcc
Confidence             12222233346667777665 44444 468888876655432      233333333333221 222332111      


Q ss_pred             -cchhhhhhcccCC
Q 023705          241 -EQPPMQALFVFDP  253 (278)
Q Consensus       241 -~~~avqalf~~~~  253 (278)
                       +..+...+||++.
T Consensus       153 ~~~v~~~~~~G~~~  166 (472)
T d1tqna_         153 SMDVITSTSFGVNI  166 (472)
T ss_dssp             HHHHHHHTSSCCCC
T ss_pred             chhhhhheeccccc
Confidence             1156777888775

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=82.30  E-value=0.78  Score=30.93  Aligned_cols=44  Identities=14%  Similarity=0.402  Sum_probs=32.1

Q ss_pred             HHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 023705          149 VCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK  195 (278)
Q Consensus       149 LvkSLDeyFp~gRdal~~gvLk~L~~KTGFs~~EV~RKYirY~LnEr  195 (278)
                      |.+.|-+.|.++|  +.++.+|+|...+|.+..++ |.+++|+.++.
T Consensus         8 l~~~I~~~~~~~g--~~PP~vrdl~~~l~~~e~~~-~~lL~~l~~~G   51 (64)
T d1lvaa3           8 LLKDLEDKYRVSR--WQPPSFKEVAGSFNLDPSEL-EELLHYLVREG   51 (64)
T ss_dssp             HHHHHHHHHHHHT--TSCCBHHHHHHHTTCCHHHH-HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC--CCCCcHHHHHHHhCCCHHHH-HHHHHHHHHCC
Confidence            5566667776654  57788888888888777665 78888887764