Citrus Sinensis ID: 023714

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MSVSIELLSTKNPNPNPRLSFGSEALYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFSASHEESKSSEESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITKKY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccEEEEEcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHHccccccccccccccccEEEcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHEccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHcccccccccccEEccEEEccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MSVSIELLstknpnpnprlsfgsealygspcmrvqsraqrvsIAPRAKVAAKgigvgfqlperrrssfyrstvvfsasheesksseesSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEatennpevKEIVEtftlptedvkefSTLRDFYLGIPYGLLLTLGGFISFmvtgsipairFGVILGGTLLALSIASLrshkkgktspvalkgqagqRVVYFTIEITKKY
Flexible Loop (DISEMBL)
MSVSIELLstknpnpnprlSFGSEALYGSPCMRVQSRAQRVSIAPrakvaakgigvgfqlperrrssfYRSTVVFsasheesksseesseIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELsedgkkylteatennpevkeiVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLrshkkgktspvalkgqagqrvvYFTIEITKKY
Low Complexity Region (SEG)
MSVSIELLSTKNPNPNPRLSFGSEALYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFsasheesksseesseikasakeseeaWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITKKY
Disordered region (IsUnstruct)
*****************************************SIAPRAKVAAKGIGVGFQLP******FYRSTVV*********************************AF************EAYEIYSKRATAILKE****************************************VKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLR**********ALKGQAGQRVVYFTIEI****
Disordered Region (DISOPRED)
*****************************************************IGVGFQLPERRRSSFYRS**********************************LAAF*************************************************************************************FSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRS*****TSPVALKGQAGQRVVYFTIEITKKY
Disordered Region (DISEMBL)
MSVSIELLSTKNPNPNPRLSFGSEALYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVGFQLPERRRSSFYRSTV****************************WKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLR***********LKGQAGQRVVYFTIEITKKY
Disordered Region (DISPRO)
*****ELLSTKNPNPNPRLSFGSEALYGSPCMRV***AQRVSIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFSAS*******************SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITKKY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVSIELLSTKNPNPNPRLSFGSEALYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFSASHEESKSSEESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRAxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITKKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
356568226	316	PREDICTED: uncharacterized protein LOC10	0.910	0.800	0.518	8e-67
225439699	339	PREDICTED: uncharacterized protein LOC10	0.971	0.796	0.486	1e-65
388520637	310	unknown [Medicago truncatula]	0.881	0.790	0.511	1e-65
357506683	308	hypothetical protein MTR_7g073340 [Medic	0.881	0.795	0.511	1e-65
297735538	344	unnamed protein product [Vitis vinifera]	0.971	0.784	0.486	1e-65
147828305	385	hypothetical protein VITISV_015389 [Viti	0.935	0.675	0.493	3e-65
224087865	331	predicted protein [Populus trichocarpa]	0.974	0.818	0.489	3e-64
224139370	228	predicted protein [Populus trichocarpa]	0.784	0.956	0.565	1e-63
18404784	335	Transmembrane proteins 14C [Arabidopsis	0.964	0.8	0.505	5e-62
21554522	334	putative non-green plastid inner envelop	0.964	0.802	0.505	6e-62

>gi|356568226|ref|XP_003552314.1| PREDICTED: uncharacterized protein LOC100808049 [Glycine max]

 Score =  259 bits (662), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 139/268 (51%), Positives = 187/268 (69%), Gaps = 15/268 (5%)

Query: 16  NPRLSFGSEALYGSPCMRV-QSRAQRVSIAPRAKVAA---KGIGVGFQLPERRRSSFYRS 71
           NP+LS    +L   P  R   S      + PRA  AA    G+   F    RR+      
Sbjct: 13  NPKLSHSHSSL---PFSRFPHSLNFHPLLKPRAVNAAVPPNGLAACFLTLHRRKPL---- 65

Query: 72  TVVFSASHEESKSSE----ESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIY 127
           TV F+ASH++S+  E    +  ++ A ++ES+EAWKQ L  FREQA K Q VSQEAYE+Y
Sbjct: 66  TVAFTASHQDSEHREIEVEKERDVHAGSEESQEAWKQVLETFREQAEKFQGVSQEAYEVY 125

Query: 128 SKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTL 187
           SK+A  IL +  EQLK+ A+K + +L+V AKE++++GK+YL+ A +++PEVKEIVETFT 
Sbjct: 126 SKKAAVILTDATEQLKVLADKTKNELSVAAKEITDEGKEYLSAAADSSPEVKEIVETFTS 185

Query: 188 PTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLR 247
           P ED+++ S +RDFY+G+PYGL+L+LGGF+SFMVTG+  AIRFGVILGG LLALSI SL+
Sbjct: 186 PPEDIQKLSGVRDFYVGVPYGLMLSLGGFLSFMVTGNTAAIRFGVILGGVLLALSILSLK 245

Query: 248 SHKKGKTSPVALKGQAGQRVVYFTIEIT 275
           S+KKG+TSP+ALKGQA    + F  EI+
Sbjct: 246 SYKKGRTSPLALKGQAAIASILFLREIS 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439699|ref|XP_002271868.1| PREDICTED: uncharacterized protein LOC100243025 [Vitis vinifera]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/298 (48%), Positives = 200/298 (67%), Gaps = 28/298 (9%)

Query: 1   MSVSIELLSTKNPNPNPRLSFGSE-------------------ALYGSPCMRVQSRAQRV 41
           MSV++E +S  +PNPNP  + GS                    +L G    R +SR   V
Sbjct: 1   MSVTLESISLSSPNPNPSPTTGSPLRITPYHPSSQSSSSLRFASLLGP---RPRSRPHGV 57

Query: 42  SIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFSASHEESKSSE---ESSEIKASAKES 98
           S   R  ++  G+G G  +P  RR+S  R  +  +AS E+S   E   E++ + A A+ S
Sbjct: 58  SAVART-LSPIGLGHGL-VPLTRRTSCNRLVLASAASREDSSKIEVEKENTNVGAGAEAS 115

Query: 99  EEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAK 158
           EE W++TLA+ +EQA+KMQSVSQEAYEIYS+RA  IL ET++QLK +A+KA +DL  +AK
Sbjct: 116 EEEWQKTLASLKEQALKMQSVSQEAYEIYSERAKVILIETSKQLKAQADKASQDLNELAK 175

Query: 159 ELSEDGKKYLTEATENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFI 217
            + EDGK+YL+ A EN+P  +K++VETFT P++D+ + S +RDFYLGIPYG+ L++GG +
Sbjct: 176 VIGEDGKEYLSLAAENSPVPLKDVVETFTSPSDDLDKISKVRDFYLGIPYGVALSVGGLL 235

Query: 218 SFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT 275
           SFM+TGSIPA+RFGVILGG LLALSI+SLR+ KKG++  +ALKGQ     + F  EI 
Sbjct: 236 SFMLTGSIPAVRFGVILGGALLALSISSLRAWKKGESLALALKGQTAIAGIIFLREIC 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520637|gb|AFK48380.1| unknown [Medicago truncatula]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/268 (51%), Positives = 186/268 (69%), Gaps = 23/268 (8%)

Query: 16  NPRLSFGSEALYGSPCMR--VQSRAQRVSIA-PRAKVAAKGIGVGFQLPERRRSSFYRST 72
           NP+LS     L  SP     ++ R     ++ PR           + L +R +      T
Sbjct: 15  NPKLSLNHTHLSHSPNFHPLLKHRHTTFKLSLPR-----------YALNQRTKPL----T 59

Query: 73  VVFSASHEESKSSEESSEIK-----ASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIY 127
           +VF+AS  +  S     E++     +S +ES+EAWKQ L  F+EQA+K+Q VSQEAYE+Y
Sbjct: 60  LVFAASTPQHDSDHGEIEVEKGNDVSSEEESQEAWKQALDTFKEQALKLQGVSQEAYEVY 119

Query: 128 SKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTL 187
           SK+A  +L++T+EQLKI+A+KAR DL+VVAKE++E+GK+Y + A EN+PEVKEIVETFT 
Sbjct: 120 SKKAIVVLQDTSEQLKIQADKARHDLSVVAKEITEEGKEYFSSAAENSPEVKEIVETFTS 179

Query: 188 PTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLR 247
           P +D+ + S +RDFY+GIPYGLLL+ GGF+SFM+TGSI AIRFGVILGG LLALSI+SL+
Sbjct: 180 PDDDLSKVSGVRDFYVGIPYGLLLSAGGFLSFMITGSIAAIRFGVILGGVLLALSISSLK 239

Query: 248 SHKKGKTSPVALKGQAGQRVVYFTIEIT 275
           S+KKG+ S +ALKGQ     + F  EI+
Sbjct: 240 SYKKGQPSSLALKGQTAIAGILFLREIS 267

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506683|ref|XP_003623630.1| hypothetical protein MTR_7g073340 [Medicago truncatula] gi|355498645|gb|AES79848.1| hypothetical protein MTR_7g073340 [Medicago truncatula]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/268 (51%), Positives = 186/268 (69%), Gaps = 23/268 (8%)

Query: 16  NPRLSFGSEALYGSPCMR--VQSRAQRVSIA-PRAKVAAKGIGVGFQLPERRRSSFYRST 72
           NP+LS     L  SP     ++ R     ++ PR           + L +R +      T
Sbjct: 15  NPKLSLNHTHLSHSPNFHPLLKHRHTTFKLSLPR-----------YALNQRTKPL----T 59

Query: 73  VVFSASHEESKSSEESSEIK-----ASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIY 127
           +VF+AS  +  S     E++     +S +ES+EAWKQ L  F+EQA+K+Q VSQEAYE+Y
Sbjct: 60  LVFAASTPQHDSDHGEIEVEKGNDVSSEEESQEAWKQALDTFKEQALKLQGVSQEAYEVY 119

Query: 128 SKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTL 187
           SK+A  +L++T+EQLKI+A+KAR DL+VVAKE++E+GK+Y + A EN+PEVKEIVETFT 
Sbjct: 120 SKKAIVVLQDTSEQLKIQADKARHDLSVVAKEITEEGKEYFSSAAENSPEVKEIVETFTS 179

Query: 188 PTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLR 247
           P +D+ + S +RDFY+GIPYGLLL+ GGF+SFM+TGSI AIRFGVILGG LLALSI+SL+
Sbjct: 180 PDDDLSKVSGVRDFYVGIPYGLLLSAGGFLSFMITGSIAAIRFGVILGGVLLALSISSLK 239

Query: 248 SHKKGKTSPVALKGQAGQRVVYFTIEIT 275
           S+KKG+ S +ALKGQ     + F  EI+
Sbjct: 240 SYKKGQPSSLALKGQTAIAGILFLREIS 267

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735538|emb|CBI18032.3| unnamed protein product [Vitis vinifera]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/298 (48%), Positives = 200/298 (67%), Gaps = 28/298 (9%)

Query: 1   MSVSIELLSTKNPNPNPRLSFGSE-------------------ALYGSPCMRVQSRAQRV 41
           MSV++E +S  +PNPNP  + GS                    +L G    R +SR   V
Sbjct: 1   MSVTLESISLSSPNPNPSPTTGSPLRITPYHPSSQSSSSLRFASLLGP---RPRSRPHGV 57

Query: 42  SIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFSASHEESKSSE---ESSEIKASAKES 98
           S   R  ++  G+G G  +P  RR+S  R  +  +AS E+S   E   E++ + A A+ S
Sbjct: 58  SAVART-LSPIGLGHGL-VPLTRRTSCNRLVLASAASREDSSKIEVEKENTNVGAGAEAS 115

Query: 99  EEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAK 158
           EE W++TLA+ +EQA+KMQSVSQEAYEIYS+RA  IL ET++QLK +A+KA +DL  +AK
Sbjct: 116 EEEWQKTLASLKEQALKMQSVSQEAYEIYSERAKVILIETSKQLKAQADKASQDLNELAK 175

Query: 159 ELSEDGKKYLTEATENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFI 217
            + EDGK+YL+ A EN+P  +K++VETFT P++D+ + S +RDFYLGIPYG+ L++GG +
Sbjct: 176 VIGEDGKEYLSLAAENSPVPLKDVVETFTSPSDDLDKISKVRDFYLGIPYGVALSVGGLL 235

Query: 218 SFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT 275
           SFM+TGSIPA+RFGVILGG LLALSI+SLR+ KKG++  +ALKGQ     + F  EI 
Sbjct: 236 SFMLTGSIPAVRFGVILGGALLALSISSLRAWKKGESLALALKGQTAIAGIIFLREIC 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828305|emb|CAN66482.1| hypothetical protein VITISV_015389 [Vitis vinifera]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/288 (49%), Positives = 197/288 (68%), Gaps = 28/288 (9%)

Query: 1   MSVSIELLSTKNPNPNPRLSFGSE-------------------ALYGSPCMRVQSRAQRV 41
           MSV++E +S  +PNPNP  + GS                    +L G    R +SR   V
Sbjct: 1   MSVTLESISLSSPNPNPSPTTGSPLRITPYHPSSQSSSSLRFASLLGP---RPRSRPHGV 57

Query: 42  SIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFSASHEESKSSE---ESSEIKASAKES 98
           S   R  ++  G+G G  +P  RR+S  R  +  +AS E+S   E   E++ + A A+ S
Sbjct: 58  SAVART-LSPIGLGHGL-VPLTRRTSCNRLVLASAASREDSSKIEVEKENTNVGAGAEAS 115

Query: 99  EEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAK 158
           EE W++TLA+ +EQA+KMQSVSQE YEIYS+RA  IL ET++QLK +A+KA +DL  +AK
Sbjct: 116 EEEWQKTLASLKEQALKMQSVSQEXYEIYSERAKVILIETSKQLKAQADKASQDLNELAK 175

Query: 159 ELSEDGKKYLTEATENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFI 217
            + EDGK+YL+ A EN+P  +K++VETFT P++D+ + S +RDFYLGIPYG+ L++GG +
Sbjct: 176 VIGEDGKEYLSLAAENSPVPLKDVVETFTSPSDDLDKISKVRDFYLGIPYGVALSVGGLL 235

Query: 218 SFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQ 265
           SFM+TGSIPA+RFGVILGG LLALSI+SLR+ KKG++  +ALKGQ G+
Sbjct: 236 SFMLTGSIPAVRFGVILGGALLALSISSLRAWKKGESLALALKGQTGR 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087865|ref|XP_002308255.1| predicted protein [Populus trichocarpa] gi|222854231|gb|EEE91778.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 141/288 (48%), Positives = 193/288 (67%), Gaps = 17/288 (5%)

Query: 1   MSVSIELLS---TKNPNPNPRLSFGSEALYGSPCMRVQS-----RAQRVSIAPRAKVAAK 52
           MSVS+ELLS   +  P   P +   S     +P ++ +S        R+S         K
Sbjct: 1   MSVSMELLSAGCSTLPLKRPPVCSSSSMALLAPSLKFKSLLLKPSGHRLSFESSRAFVPK 60

Query: 53  GIGVGFQLPERRRSSFYRSTVVFSASHEESKSS----EESSEIKASAKESEEAWKQTLAA 108
           G+ VGF       +S  R  V F+ASHE+S S     +ES + K   +ESEE WKQTL +
Sbjct: 61  GLSVGF----LSGNSLNRPIVAFAASHEDSHSKIEVEKESEDRKLGGEESEEVWKQTLES 116

Query: 109 FREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYL 168
           F+EQA+K+QSVSQEAYEIYSK+   +L+ET+E+LKI+AEKA+ DL  +AKE  EDG + L
Sbjct: 117 FKEQALKLQSVSQEAYEIYSKKTMVVLQETSEKLKIQAEKAKSDLGELAKEFGEDGIQLL 176

Query: 169 TEATENNPE-VKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPA 227
           T ATEN+PE VKE+VET T  T+++ + S +RDF+LGIPYGLLL+  GF+SFM++GSI +
Sbjct: 177 TVATENSPESVKEVVETLTSSTDNLNDVSKVRDFHLGIPYGLLLSTAGFLSFMLSGSISS 236

Query: 228 IRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT 275
           +RFGVILGG LLALS++SL+S+K+ +   +ALKGQA    + F  +I+
Sbjct: 237 LRFGVILGGMLLALSVSSLKSYKRAEPYSLALKGQAAIAAIIFLRDIS 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139370|ref|XP_002323079.1| predicted protein [Populus trichocarpa] gi|222867709|gb|EEF04840.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/228 (56%), Positives = 170/228 (74%), Gaps = 10/228 (4%)

Query: 53  GIGVGFQLPERRRSSFYRSTVVFSASHEESKSSE-----ESSEIKASAKESEEAWKQTLA 107
           G+GVGF    R  +S  R  VVF+ SHE+S+ SE     ES + K   +ESEE WKQTL 
Sbjct: 1   GVGVGF----RSGNSLNRQIVVFAGSHEDSEHSEIEVEKESQDKKLEGEESEEVWKQTLE 56

Query: 108 AFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKY 167
           +F+EQA+++QSVSQEAYEIYS++A  IL+ET+E+LKI+A KA+KDL  +AKEL ED  +Y
Sbjct: 57  SFKEQALRLQSVSQEAYEIYSEKAMVILEETSEKLKIQAVKAKKDLGELAKELGEDSIEY 116

Query: 168 LTEATENNPE-VKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIP 226
           L  ATEN+PE VKE+VET +  T+D  + S +RDF +GIPYGLLL   GF+SFM++GSI 
Sbjct: 117 LVAATENSPEPVKEVVETLSSSTDDFNDISKVRDFQVGIPYGLLLATAGFLSFMLSGSIN 176

Query: 227 AIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEI 274
           +IRFGVILGG LLALS++SL+S+K+G+   +ALKGQA    + F  +I
Sbjct: 177 SIRFGVILGGALLALSVSSLKSYKRGEPDSLALKGQAAIVAIIFLRDI 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404784|ref|NP_565892.1| Transmembrane proteins 14C [Arabidopsis thaliana] gi|14334694|gb|AAK59525.1| putative non-green plastid inner envelope membrane protein [Arabidopsis thaliana] gi|20197395|gb|AAC67363.2| putative non-green plastid inner envelope membrane protein [Arabidopsis thaliana] gi|22136954|gb|AAM91706.1| putative non-green plastid inner envelope membrane protein [Arabidopsis thaliana] gi|330254455|gb|AEC09549.1| Transmembrane proteins 14C [Arabidopsis thaliana]

 Score =  243 bits (621), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 143/283 (50%), Positives = 187/283 (66%), Gaps = 15/283 (5%)

Query: 1   MSVSIELLSTKNPNPNPRLSFGSEA---LYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVG 57
           MS+ +EL+S +NPN        S     L   P   + SR  R   APRA V+  GI  G
Sbjct: 2   MSIPMELMSIRNPNSTLLYRAHSRPPVKLCAPPRSLLPSR--RHFSAPRAVVSYPGIRFG 59

Query: 58  FQLPERRRSSFYRSTVVFSASHEESKSS-----EESSEIKASAKESEEAWKQTLAAFREQ 112
           F  PE       RS V F+ASHE+S  S     +E S+I      S+EAWKQTL +F+EQ
Sbjct: 60  FTSPEVL---LNRSVVAFAASHEDSGESGVEVGKEKSDIDVEDDTSKEAWKQTLESFKEQ 116

Query: 113 AIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEAT 172
             KMQSVS EAY + S++A  +LKET+EQL+I+AEKA+++L   AK +SE+G++Y+ +A 
Sbjct: 117 VSKMQSVSSEAYSVNSQKAMTVLKETSEQLRIQAEKAKEELGTKAKVVSEEGREYILKAA 176

Query: 173 ENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFG 231
           E +P +VKEIVE F   TED+K  S   DF++GIPYGLLL +GGFI+FMV+GSIPAIRFG
Sbjct: 177 EESPSDVKEIVEAFA-STEDLKNVSRANDFHVGIPYGLLLLVGGFINFMVSGSIPAIRFG 235

Query: 232 VILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEI 274
           VILGG L ALS+ASL+SH+KG++S   LKGQ     + F  E+
Sbjct: 236 VILGGALFALSLASLKSHRKGESSTKFLKGQMAIVAIIFLREL 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554522|gb|AAM63598.1| putative non-green plastid inner envelope membrane protein [Arabidopsis thaliana]

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 143/283 (50%), Positives = 187/283 (66%), Gaps = 15/283 (5%)

Query: 1   MSVSIELLSTKNPNPNPRLSFGSEA---LYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVG 57
           MS+ +EL+S +NPN        S     L   P   + SR  R   APRA V+  GI  G
Sbjct: 1   MSIPMELMSIRNPNSTLLYRAHSRPPVKLCAPPRSLLPSR--RHFSAPRAVVSYPGIRFG 58

Query: 58  FQLPERRRSSFYRSTVVFSASHEESKSS-----EESSEIKASAKESEEAWKQTLAAFREQ 112
           F  PE       RS V F+ASHE+S  S     +E S+I      S+EAWKQTL +F+EQ
Sbjct: 59  FTSPEVL---LNRSVVAFAASHEDSGESGVEVGKEKSDIDVEDDTSKEAWKQTLESFKEQ 115

Query: 113 AIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEAT 172
             KMQSVS EAY + S++A  +LKET+EQL+I+AEKA+++L   AK +SE+G++Y+ +A 
Sbjct: 116 VSKMQSVSSEAYSVNSQKAMTVLKETSEQLRIQAEKAKEELGTKAKVVSEEGREYILKAA 175

Query: 173 ENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFG 231
           E +P +VKEIVE F   TED+K  S   DF++GIPYGLLL +GGFI+FMV+GSIPAIRFG
Sbjct: 176 EESPSDVKEIVEAFA-STEDLKNVSRANDFHVGIPYGLLLLVGGFINFMVSGSIPAIRFG 234

Query: 232 VILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEI 274
           VILGG L ALS+ASL+SH+KG++S   LKGQ     + F  E+
Sbjct: 235 VILGGALFALSLASLKSHRKGESSTKFLKGQMAIVAIIFLREL 277

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2064206	335	AT2G38550 "AT2G38550" [Arabido	0.964	0.8	0.462	1e-52
TAIR|locus:2082578	226	AT3G57280 "AT3G57280" [Arabido	0.514	0.632	0.324	7.8e-10
TAIR|locus:2033177	119	AT1G50740 "AT1G50740" [Arabido	0.219	0.512	0.393	3.9e-06
TAIR|locus:2085780	119	AT3G20510 [Arabidopsis thalian	0.223	0.521	0.403	3.9e-06

TAIR|locus:2064206 AT2G38550 "AT2G38550" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 131/283 (46%), Positives = 171/283 (60%)

Query:     1 MSVSIELLSTKNPNPNPRLSFGSEA---LYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVG 57
             MS+ +EL+S +NPN        S     L   P   + SR  R   APRA V+  GI  G
Sbjct:     2 MSIPMELMSIRNPNSTLLYRAHSRPPVKLCAPPRSLLPSR--RHFSAPRAVVSYPGIRFG 59

Query:    58 FQLPERRRSSFYRSTVVFXXXXXXXXXXXXXXXXXXXXX-----XXXXXWKQTLAAFREQ 112
             F  PE   +   RS V F                               WKQTL +F+EQ
Sbjct:    60 FTSPEVLLN---RSVVAFAASHEDSGESGVEVGKEKSDIDVEDDTSKEAWKQTLESFKEQ 116

Query:   113 AIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEAT 172
               KMQSVS EAY + S++A  +LKET+EQL+I+AEKA+++L   AK +SE+G++Y+ +A 
Sbjct:   117 VSKMQSVSSEAYSVNSQKAMTVLKETSEQLRIQAEKAKEELGTKAKVVSEEGREYILKAA 176

Query:   173 ENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFG 231
             E +P +VKEIVE F   TED+K  S   DF++GIPYGLLL +GGFI+FMV+GSIPAIRFG
Sbjct:   177 EESPSDVKEIVEAFA-STEDLKNVSRANDFHVGIPYGLLLLVGGFINFMVSGSIPAIRFG 235

Query:   232 VILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEI 274
             VILGG L ALS+ASL+SH+KG++S   LKGQ     + F  E+
Sbjct:   236 VILGGALFALSLASLKSHRKGESSTKFLKGQMAIVAIIFLREL 278

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2082578 AT3G57280 "AT3G57280" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 7.8e-10, P = 7.8e-10
 Identities = 51/157 (32%), Positives = 75/157 (47%)

Query:   114 IKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATE 173
             I+ QS   ++ +  S    A L  TAE  K   EK  K  + V +  +   K+ +TE  E
Sbjct:    30 IRPQSFVVKSVDGNSSETPASLSYTAEVSKPVVEKTSKPYSTVDETATN--KESITEPVE 87

Query:   174 NNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVI 233
                      +  T P    K    + DF  GIPYG L+  GG + F  + ++ ++  GV+
Sbjct:    88 E--------DVATQPIRAAK----IHDFCFGIPYGGLVVSGGLLGFAFSRNLTSLSTGVL 135

Query:   234 LGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYF 270
              GG LLALS  SL+  ++GK+S   + GQA    V F
Sbjct:   136 YGGGLLALSTLSLKIWREGKSSFPYILGQAVLSAVVF 172

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2033177 AT1G50740 "AT1G50740" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query:   198 LRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPV 257
             + DF   IPYG+LL +GGFI ++  GSI ++  G   G  ++     SL++ +K KTS +
Sbjct:     1 MHDFCFTIPYGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSLL 60

Query:   258 A 258
             A
Sbjct:    61 A 61

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2085780 AT3G20510 [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query:   198 LRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPV 257
             + DF   IPYG+LL  GGFI +M  GSI +   G   G  L+     SL++ +K K S +
Sbjct:     1 MHDFCFTIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTI 60

Query:   258 AL 259
             A+
Sbjct:    61 AM 62


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      278       252   0.00082  114 3  11 22  0.46    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  142 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.69u 0.12s 23.81t   Elapsed:  00:00:01
  Total cpu time:  23.69u 0.12s 23.81t   Elapsed:  00:00:01
  Start:  Fri May 10 16:41:16 2013   End:  Fri May 10 16:41:17 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0023037001 hypothetical protein (331 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
pfam03647	96	pfam03647, Tmemb_14, Transmembrane proteins 14C	4e-10

>gnl|CDD|202717 pfam03647, Tmemb_14, Transmembrane proteins 14C

 Score = 55.3 bits (134), Expect = 4e-10
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 201 FYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALK 260
            + GI Y  L+ +GG + +   GS+P++  G+I G  L   +    ++   G    +AL 
Sbjct: 1   DHPGIAYAALVAIGGIMGYAKAGSVPSLIAGLIFGALLGYGAYLLSQNQPYG--LELALL 58

Query: 261 GQA 263
             A
Sbjct: 59  ASA 61

This family of short membrane proteins are as yet uncharacterized. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
KOG4267	110	consensus Predicted membrane protein [Function unk	99.86
PF03647	96	Tmemb_14: Transmembrane proteins 14C; InterPro: IP	99.62
COG5548	105	Small integral membrane protein [Function unknown]	98.77
PF06570	206	DUF1129: Protein of unknown function (DUF1129); In	94.11
PRK05771	646	V-type ATP synthase subunit I; Validated	89.02
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	85.76
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	83.71
PRK10884	206	SH3 domain-containing protein; Provisional	83.12
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	82.36
PF06738	193	DUF1212: Protein of unknown function (DUF1212); In	81.04
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	80.78

>KOG4267 consensus Predicted membrane protein [Function unknown]

Probab=99.86  E-value=3e-22  Score=164.31  Aligned_cols=76  Identities=32%  Similarity=0.449  Sum_probs=73.2

Q ss_pred             cccceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCC-CchhHHH-HHHHHHHHHHHHHhh
Q 023714          198 LRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGK-TSPVALK-GQAGQRVVYFTIEIT  275 (278)
Q Consensus       198 mHDFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk-~s~l~L~-~SavLAavm~~R~~~  275 (278)
                      |||||+||+|++||++||||||+|+||++||++|+++|++   +||+|++.|++++ +++.++. ++++|+++|++|.++
T Consensus         1 m~~~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l---~g~~s~~l~~~~~~~~~~~l~~~s~~L~gvmg~R~~~   77 (110)
T KOG4267|consen    1 MHDDCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGAL---AGYGSYLLSRDKKGGSLVALGGTSAALLGVMGQRFYR   77 (110)
T ss_pred             CCchhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHH---HHHHHHHhhcCCCcCchhHHHHHHHHHHHHHhhhhhc
Confidence            7999999999999999999999999999999999999988   9999999999999 9999999 699999999999876


Q ss_pred             h
Q 023714          276 K  276 (278)
Q Consensus       276 ~  276 (278)
                      .
T Consensus        78 s   78 (110)
T KOG4267|consen   78 S   78 (110)
T ss_pred             c
Confidence            4

>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised

Probab=99.62  E-value=5.3e-17  Score=128.34  Aligned_cols=74  Identities=35%  Similarity=0.420  Sum_probs=65.2

Q ss_pred             ceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHHHHHHhhh
Q 023714          201 FYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITK  276 (278)
Q Consensus       201 FclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~~  276 (278)
                      ||++++||+++++||++||+|+||++||++|+++|++++++++.+.  ++++....+++.+|++|+++|++|.++.
T Consensus         1 f~~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~--~~~~~~~~~~l~~s~~L~~~m~~R~~~t   74 (96)
T PF03647_consen    1 FHLAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSL--TNQKWGSELALAISAVLAGVMGYRYIKT   74 (96)
T ss_dssp             HCHCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS---STHHCCHHHHHHHHHHHHCCTSSS-SS
T ss_pred             CchhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhh--ccCCccHHHHHHHHHHHHHHHHHHHHHc
Confidence            8999999999999999999999999999999999999999988876  6677788999999999999999997653

; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.

>COG5548 Small integral membrane protein [Function unknown]

Probab=98.77  E-value=1.8e-08  Score=82.55  Aligned_cols=72  Identities=22%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             echhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHHHHHHhhh
Q 023714          203 LGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITK  276 (278)
Q Consensus       203 lgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~~  276 (278)
                      -.|.|+.|..+||+|||++++|++||++|+++|+++..++|+-++-...|  -..++.+++++-+.-+.|.++.
T Consensus         6 ~A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL~~~g~~~G--l~~A~~~s~~Ll~~~~~R~~~s   77 (105)
T COG5548           6 AAIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQGQTWG--LILATVVSAALLVFFALRLVRS   77 (105)
T ss_pred             HHHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHHHHcCcccC--eehHHHHHHHHHHhcchhcccc
Confidence            35889999999999999999999999999999999888888744322222  2467778888877777776543

>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues

Probab=94.11  E-value=1.6  Score=38.27  Aligned_cols=25  Identities=20%  Similarity=0.133  Sum_probs=14.6

Q ss_pred             cccceechhHHHH------HHHhhHHHHHhc
Q 023714          198 LRDFYLGIPYGLL------LTLGGFISFMVT  222 (278)
Q Consensus       198 mHDFclgipYG~L------va~GGiiGY~ka  222 (278)
                      .-++|..+.++++      .++-|+++++..
T Consensus        75 ~~~~~~~~ld~~L~~~~if~~~~gi~~~f~~  105 (206)
T PF06570_consen   75 NSNPWLMALDNSLLFFGIFSLLFGIMGFFSP  105 (206)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455655555544      445577777666

However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).

>PRK05771 V-type ATP synthase subunit I; Validated

Probab=89.02  E-value=7.1  Score=39.79  Aligned_cols=71  Identities=24%  Similarity=0.424  Sum_probs=42.9

Q ss_pred             hHhHHhhcCc---hhhHHHhhcCCCCc---ccc-cccccccceech-----hHHHHHHHhhHHHHHhc------------
Q 023714          167 YLTEATENNP---EVKEIVETFTLPTE---DVK-EFSTLRDFYLGI-----PYGLLLTLGGFISFMVT------------  222 (278)
Q Consensus       167 yl~~aaensp---~vK~i~et~~~~~e---~~~-~~skmHDFclgi-----pYG~Lva~GGiiGY~ka------------  222 (278)
                      .-+..-+|++   +..+|++..+-|.=   ||. -.+..+=+.||+     +||++++++|++-..+.            
T Consensus       315 ~~Pt~l~N~~~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f~lfFGmM~gD~GyGLil~l~~~~l~~~~~k~~~~~~~~~~  394 (646)
T PRK05771        315 EVPTKLKNPKFIKPFESLTEMYSLPKYNEIDPTPFLAIFFPLFFGMMLGDAGYGLLLLLIGLLLSFKLKKKSEGLKRLLK  394 (646)
T ss_pred             CCCEEeeCCchhhhHHHHHHHcCCCCCCCcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            3444555665   56688888777631   221 224455555664     68999999777544332            


Q ss_pred             ----CChhHHHHHHHHHHH
Q 023714          223 ----GSIPAIRFGVILGGT  237 (278)
Q Consensus       223 ----GS~~SL~aGl~~G~l  237 (278)
                          -++.|.++|++.|..
T Consensus       395 il~~~gi~sii~G~lyG~f  413 (646)
T PRK05771        395 ILIYLGISTIIWGLLTGSF  413 (646)
T ss_pred             HHHHHHHHHHHHHHHHHhH
Confidence                345666777777766

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=85.76  E-value=8  Score=34.00  Aligned_cols=68  Identities=15%  Similarity=0.100  Sum_probs=57.8

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCc
Q 023714          109 FREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNP  176 (278)
Q Consensus       109 fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp  176 (278)
                      .|++|.+++.--++...-...+|..+..||.+.|...++..++.+..--+.+-+++.+-+...++|--
T Consensus        56 ~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~  123 (155)
T PRK06569         56 LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFR  123 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777766777777777888899999999999999999999999999999999999999988544

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=83.71  E-value=2.4  Score=36.07  Aligned_cols=45  Identities=29%  Similarity=0.247  Sum_probs=27.5

Q ss_pred             chhHHHHHHHhhHHHHHhcCChhHH-------HHHHHHHHHHHHHHHhhhhh
Q 023714          204 GIPYGLLLTLGGFISFMVTGSIPAI-------RFGVILGGTLLALSIASLRS  248 (278)
Q Consensus       204 gipYG~Lva~GGiiGY~kaGS~~SL-------~aGl~~G~lLL~aGygSLk~  248 (278)
                      .++-|++++++||++.+..+.-.+.       ++.+..|++|+.+|+..+..
T Consensus        11 ~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~~   62 (191)
T PF04156_consen   11 LIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCLLS   62 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667889999999997777643222       22223466666666654433

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.12  E-value=14  Score=33.44  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHH
Q 023714          135 LKETAEQLKIEAEKARKDLTVV  156 (278)
Q Consensus       135 L~etse~L~iqa~ka~~~L~~~  156 (278)
                      |++--++|+.|.+++++++..+
T Consensus       137 L~~~n~~L~~~l~~~~~~~~~l  158 (206)
T PRK10884        137 LKEENQKLKNQLIVAQKKVDAA  158 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555443

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=82.36  E-value=10  Score=40.09  Aligned_cols=41  Identities=7%  Similarity=0.138  Sum_probs=24.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023714          111 EQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARK  151 (278)
Q Consensus       111 eqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~  151 (278)
                      .+...|+.+...-+.-+.+++...+++..++.+.|.+....
T Consensus       320 ~~l~~l~~v~~~nl~~~v~~~~~~~~~ip~~v~~qt~~~v~  360 (806)
T PF05478_consen  320 SQLNNLEEVIKTNLSSIVQEGNSRFNDIPEKVQNQTSDVVP  360 (806)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            33445555555555666667777777777766666554443

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea

Probab=81.04  E-value=9.3  Score=32.44  Aligned_cols=55  Identities=13%  Similarity=0.022  Sum_probs=42.9

Q ss_pred             hhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHHHH
Q 023714          214 GGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFT  271 (278)
Q Consensus       214 GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm~~  271 (278)
                      ++.+.++..|+...++...+.|++   .++......|.+.+.....+.+++++++++.
T Consensus       114 ~~~fa~lfgg~~~~~~~a~i~g~~---~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a~  168 (193)
T PF06738_consen  114 SAAFALLFGGSWIDMIVAFILGLL---VGLLRQLLSRRRLNSFIQEFIAAFLASLLAA  168 (193)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH---HHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            345566689999999999999998   6666666778888888888888887777644

Some of these sequences are predicted to be membrane proteins.

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=80.78  E-value=15  Score=33.05  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=24.2

Q ss_pred             hcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 023714           92 KASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEI  126 (278)
Q Consensus        92 ~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~v  126 (278)
                      ++.-||-|++=+..+++.+.+-...+.+ ..|||.
T Consensus         3 ~ASfeEIq~Arn~ll~~y~gd~~~~~~I-EaAYD~   36 (194)
T PF11833_consen    3 DASFEEIQAARNRLLAQYAGDEKSREAI-EAAYDA   36 (194)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHH
Confidence            4556788888888888888776666655 346763

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	278
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	7e-04

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A Length = 108

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 202 YLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVAL 259
            +G  Y  L+T G    +   G +P++  G+ +G         + R     +   V+L
Sbjct: 12  LIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAG---YGAYRVSNDKRDVKVSL 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	99.4
2los_A	121	Transmembrane protein 14C; paramagnetic relaxation	99.39

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A

Probab=99.40  E-value=4.7e-17  Score=131.30  Aligned_cols=76  Identities=16%  Similarity=0.221  Sum_probs=70.0

Q ss_pred             ccccceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHHHHHHhh
Q 023714          197 TLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT  275 (278)
Q Consensus       197 kmHDFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~  275 (278)
                      ++-.+|++|+||+++++||++||+|+||++||++|+++|++   +++++|+.|++++...+.+..+++++.+|+.|.++
T Consensus         7 ~~~~~~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~l---l~~~~~~~~~~~~~~~l~l~~S~~L~~~m~~R~~~   82 (108)
T 2loo_A            7 KVGMDLIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCL---AGYGAYRVSNDKRDVKVSLFTAFFLATIMGVRFKR   82 (108)
Confidence            34568999999999999999999999999999999999998   58999999999988888899999999999999875

>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}

Probab=99.39  E-value=6.7e-17  Score=132.92  Aligned_cols=77  Identities=18%  Similarity=0.322  Sum_probs=70.8

Q ss_pred             cccccceechhHHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHHHHHHhh
Q 023714          196 STLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT  275 (278)
Q Consensus       196 skmHDFclgipYG~Lva~GGiiGY~kaGS~~SL~aGl~~G~lLL~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~  275 (278)
                      ..|-=+|++|+||+|+++||++||+|+||++||++|+++|++   +++++|+.|++++++++.+..+++++.+|+.|.++
T Consensus        15 ~~m~~~~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l---~~~~a~~~~~~~~~~~l~l~~S~~L~~~mg~R~~~   91 (121)
T 2los_A           15 SVVPLHWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSL---AGLGAYQLSQDPRNVWVFLATSGTLAGIMGMRFYH   91 (121)
Confidence            345559999999999999999999999999999999999998   78999999999998889999999999999999874

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00