Citrus Sinensis ID: 023727

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MPLCIHHHRCVPSSANQGGTSDGDVSKKSELAHRSVLHNLRNREQLFPCKFHHCTSAIELDSTQNSVHMASIIRSKSVLSVFFINLFLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQEEMRSQGVPSLANLIPGAGRS
Secondary Structure (PSIPRED)
cccEEccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccccccEEEEEcccEEEEEEcccccEEEcccccEEEEEEEEEcccccccEEEEEEEccccEEEEEEEccccccccEEEEEccccccEEEcccccHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccHHcccHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEcccccccccccccccccEEEEEEccEEEEEEEcccEEEEEcccccEEEEEEEccccccccEEEEEccccccEEEEEEcccccccccEEcccccccHcEcccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHccccccc
Coil and Loop (DISEMBL)
mplcihhhrcvpssanqggtsdgdvskkseLAHRSVLHNLrnreqlfpckfhhctsaieldstqnsvHMASIIRSKSVLSVFFINLFLSLVSSAVAvssgsgdgfsisgrvklpgmslkafgspggkasnVKVVLNggehvtflrpdgyfsfqnmsaGTHLIEVAAIGYffspvrvdvsarhpgKVQAALTETRRGLNELVLEQLREEQyyeirepfsimslvkspmglMMGFMLVVVFLMPklmenmdpEEMRRAQEEMRsqgvpslanlipgagrs
Flexible Loop (DISEMBL)
mplcihhhrcvpssanqggtsdGDVSKKSELAHRSVLHNLRNREQLFPCKFHHCTSAIELDSTQNSVHMASIIRSKSVLSVFFINLFLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQEEmrsqgvpslanlipgagrs
Low Complexity Region (SEG)
MPLCIHHHRCVPSSANQGGTSDGDVSKKSELAHRSVLHNLRNREQLFPCKFHHCTSAIELDSTQNSVHMASIIRSKSVLSVFFINlflslvssavavssgsgdgfsisgRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPmglmmgfmlvvvflmPKLMENMDPEEMRRAQEEMRSQGVPSLANLIPGAGRS
Disordered region (IsUnstruct)
***********************************VLHNLRNREQLFPCKFHHCTSAIELDSTQNSVHMASIIRSKSVLSVFFINLFLSLVSSAVAVSSG***GFSISGRVKL**************ASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKL**********************************
Disordered Region (DISOPRED)
*PLC***HR*********************LAHRSVLHNLRNREQLFPCKFHHCTSAIELDSTQNSVHMASIIRSKSVLSVFFINLFLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLME********************************
Disordered Region (DISEMBL)
MPLCIHHHRCVPS*************KKSELAHRSVLHNLRNREQLFPCKFHHCTSAIELDSTQNSVHMASIIRSKSVLSVFFINLFLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEE************VPSLANLIPGAGRS
Disordered Region (DISPRO)
*PL******CVP*******************AHRSVLHNLRNREQLFPCKFHHCTSAIELDSTQNSVHMASIIRSKSVLSVFFINLFLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQEEMR*****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLCIHHHRCVPSSANQGGTSDGDVSKKSELAHRSVLHNLRNREQLFPCKFHHCTSAIELDSTQNSVHMASIIRSKSVLSVFFINLFLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQEEMRSQGVPSLANLIPGAGRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	278	2.2.26 [Sep-21-2011]
Q8VY97	202	ER membrane protein compl	no	no	0.723	0.995	0.661	1e-65
Q0IHY5	237	ER membrane protein compl	yes	no	0.557	0.654	0.321	1e-16
Q4R5V2	242	ER membrane protein compl	N/A	no	0.532	0.611	0.319	4e-16
Q9NPA0	242	ER membrane protein compl	yes	no	0.532	0.611	0.319	5e-16
Q9EP72	241	ER membrane protein compl	yes	no	0.532	0.614	0.319	5e-16
A5PJA8	241	ER membrane protein compl	yes	no	0.525	0.605	0.316	2e-15
Q5TYV0	237	ER membrane protein compl	yes	no	0.561	0.658	0.309	6e-14
Q54ST6	216	ER membrane protein compl	yes	no	0.546	0.703	0.308	8e-12
Q8WQG1	222	ER membrane protein compl	yes	no	0.633	0.792	0.281	7e-07

>sp|Q8VY97|Y4213_ARATH ER membrane protein complex subunit 7 homolog OS=Arabidopsis thaliana GN=At4g32130 PE=1 SV=1

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/207 (66%), Positives = 169/207 (81%), Gaps = 6/207 (2%)

Query: 69  MASIIRSKSVLSVFFINLFLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKA 128
           MA I RS S+++    +LF    +S + +SSGS D ++I+GRV++P  ++    +   K 
Sbjct: 1   MAPIFRSTSLIAF---SLFFFFFASTLPISSGSEDSYTITGRVRVPASTVIGHAA---KF 54

Query: 129 SNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQA 188
           SN+KV+LNGG+HVTFLRPDGYF+F  + AGTHLIEV A+GYFFSPVRVDVSARH GKVQA
Sbjct: 55  SNIKVILNGGQHVTFLRPDGYFTFHKVPAGTHLIEVYALGYFFSPVRVDVSARHRGKVQA 114

Query: 189 ALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENM 248
            LTETRR L ELVLE LR EQYYE+REPFS+MS+VKSPMGLM+GFM+VVVFLMPKLMEN+
Sbjct: 115 TLTETRRSLTELVLEPLRAEQYYEMREPFSVMSIVKSPMGLMVGFMVVVVFLMPKLMENI 174

Query: 249 DPEEMRRAQEEMRSQGVPSLANLIPGA 275
           DPEEM+ AQE+MRSQGVPSL +L+P +
Sbjct: 175 DPEEMKSAQEQMRSQGVPSLTSLLPAS 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q0IHY5|EMC7_XENTR ER membrane protein complex subunit 7 OS=Xenopus tropicalis GN=emc7 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 16/171 (9%)

Query: 96  AVSSGSG-DGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQN 154
            +S GSG D F + GR  +PG+       P    +  +V+++G EHV FLR DG F   +
Sbjct: 32  VLSPGSGSDKFKVEGRAVVPGVR------PQDWVNTARVLVDGEEHVGFLRTDGSFVVHD 85

Query: 155 MSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQA------ALTETRRGLNELVLEQLREE 208
           + +G++++EV +  + F PVRVD++++  GK++A        +E  R    L ++     
Sbjct: 86  VPSGSYVVEVISPAHRFEPVRVDITSK--GKMRARYVNHIKTSEVVRLPYPLQMKSSGPP 143

Query: 209 QYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQEE 259
            Y+  RE +     + +PM +MM   L++  L+PK++   DP EMRR  E+
Sbjct: 144 SYFIKRETWGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDP-EMRREMEQ 193

Xenopus tropicalis (taxid: 8364)

>sp|Q4R5V2|EMC7_MACFA ER membrane protein complex subunit 7 OS=Macaca fascicularis GN=EMC7 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 15/163 (9%)

Query: 103 DGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLI 162
           D F I GR  +PG+       P    S  +V+++G EHV FL+ DG F   ++ +G++++
Sbjct: 43  DRFKIEGRAVVPGVK------PQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVV 96

Query: 163 EVAAIGYFFSPVRVDVSARHPGKVQA------ALTETRRGLNELVLEQLREEQYYEIREP 216
           EV +  Y F PVRVD++++  GK++A        +E  R    L ++      Y+  RE 
Sbjct: 97  EVVSPAYRFDPVRVDITSK--GKMRARYVNHIKTSEVVRLPYPLQMKSSGPPSYFIKRES 154

Query: 217 FSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQEE 259
           +     + +PM +MM   L++  L+PK++   DP +MRR  E+
Sbjct: 155 WGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDP-DMRREMEQ 196

Macaca fascicularis (taxid: 9541)

>sp|Q9NPA0|EMC7_HUMAN ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 15/163 (9%)

Query: 103 DGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLI 162
           D F I GR  +PG+       P    S  +V+++G EHV FL+ DG F   ++ +G++++
Sbjct: 43  DRFKIEGRAVVPGVK------PQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVV 96

Query: 163 EVAAIGYFFSPVRVDVSARHPGKVQA------ALTETRRGLNELVLEQLREEQYYEIREP 216
           EV +  Y F PVRVD++++  GK++A        +E  R    L ++      Y+  RE 
Sbjct: 97  EVVSPAYRFDPVRVDITSK--GKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRES 154

Query: 217 FSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQEE 259
           +     + +PM +MM   L++  L+PK++   DP +MRR  E+
Sbjct: 155 WGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDP-DMRREMEQ 196

Homo sapiens (taxid: 9606)

>sp|Q9EP72|EMC7_MOUSE ER membrane protein complex subunit 7 OS=Mus musculus GN=Emc7 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 15/163 (9%)

Query: 103 DGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLI 162
           D F I GR  +PG+       P    S  +V+++G EHV FL+ DG F   ++ +G++++
Sbjct: 42  DRFKIEGRAVVPGVK------PQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVV 95

Query: 163 EVAAIGYFFSPVRVDVSARHPGKVQA------ALTETRRGLNELVLEQLREEQYYEIREP 216
           EV +  Y F PVRVD++++  GK++A        +E  R    L ++      Y+  RE 
Sbjct: 96  EVISPAYKFDPVRVDITSK--GKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRES 153

Query: 217 FSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQEE 259
           +     + +PM +MM   L++  L+PK++   DP +MRR  E+
Sbjct: 154 WGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDP-DMRREMEQ 195

Mus musculus (taxid: 10090)

>sp|A5PJA8|EMC7_BOVIN ER membrane protein complex subunit 7 OS=Bos taurus GN=EMC7 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)

Query: 105 FSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEV 164
           F I GR  +PG+       P    S  +V+++G EHV FL+ DG F   ++ +G++++EV
Sbjct: 44  FKIEGRAVVPGVK------PQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEV 97

Query: 165 AAIGYFFSPVRVDVSARHPGKVQA------ALTETRRGLNELVLEQLREEQYYEIREPFS 218
            +  Y F PVRVD++++  GK++A        +E  R    L ++      Y+  RE + 
Sbjct: 98  ISPAYRFDPVRVDITSK--GKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWG 155

Query: 219 IMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQEE 259
               + +PM +MM   L++  L+PK++   DP +MRR  E+
Sbjct: 156 WTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDP-DMRREMEQ 195

Bos taurus (taxid: 9913)

>sp|Q5TYV0|EMC7_DANRE ER membrane protein complex subunit 7 OS=Danio rerio GN=emc7 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 97/171 (56%), Gaps = 15/171 (8%)

Query: 95  VAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQN 154
           VA S  +GD F I GR  +PG+  + +       S  +V++ G E+V FL+ DG F+  +
Sbjct: 32  VAASQSNGDRFKIEGRAIVPGVKTQDW------ISTARVLVEGEEYVGFLKTDGSFAVND 85

Query: 155 MSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALT---ETRRGLNELVLEQLR---EE 208
           + +G++++E+ +  + F PVRVD++++  GK++A L    +T   + +    Q+R     
Sbjct: 86  VPSGSYVVEIVSPSFRFEPVRVDITSK--GKMRARLVNYIKTSEVIRQPYPLQIRAGGPH 143

Query: 209 QYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQEE 259
            Y+  RE +     + +PM +MM   L+++ L+PK++   DP EMR+  E+
Sbjct: 144 TYFMKRETWGWTDFLMNPMVMMMVLPLLIIVLLPKVVNTNDP-EMRKEMEQ 193

Danio rerio (taxid: 7955)

>sp|Q54ST6|Y5281_DICDI ER membrane protein complex subunit 7 homolog OS=Dictyostelium discoideum GN=DDB_G0282229 PE=3 SV=2

 Score = 71.2 bits (173), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 7/159 (4%)

Query: 119 KAFGSPGGKASNVKVVLNG----GEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPV 174
           K F     K S+ +V L       E V     DG FSF NMS G + +E+ ++ Y F   
Sbjct: 47  KLFAPNDAKFSSYRVKLRDINTFNEIVQIPTKDGIFSFVNMSNGLYSLEIESMQYNFPHF 106

Query: 175 RVDVSARHPGKVQAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFM 234
           +VDV  ++  KV+ A  ET      L ++      +++   PFSI SLV++PM + + F 
Sbjct: 107 KVDVLGKNKIKVRPAENETSILPLPLQIKATHRIPFFQQHVPFSIFSLVQNPMAISVLFT 166

Query: 235 LVVVFLMPKLMENMDPEEMRRAQEEMRSQGVPSLANLIP 273
             ++FL+PK+M  ++ +E    +E +++   P+L   +P
Sbjct: 167 CALIFLLPKMMSFIEQDE--ETKEALKA-STPALVQQLP 202

Dictyostelium discoideum (taxid: 44689)

>sp|Q8WQG1|YLC1_CAEEL ER membrane protein complex subunit 7 homolog OS=Caenorhabditis elegans GN=C35D10.1 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 76  KSVLSVFFINLFLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVL 135
           KS+L +F + + L   +  V+ +  +   FS+ G + LP     A  S G +     + L
Sbjct: 2   KSILLLFSL-IVLGSATEEVSRTEQTSTLFSVEGEIALPSTRNCAKWSAGAR-----IHL 55

Query: 136 NGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRR 195
           N G+++ F+R D  F    +  GT+++++    + F P+RVD++++  GK++A      +
Sbjct: 56  NHGQYMGFVRQDCTFRVDFVPTGTYIVQIENTDFVFEPIRVDITSK--GKMRARKLTILQ 113

Query: 196 GLN------ELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMD 249
             N       L L      +Y+  RE + I  ++ SPM LM+   LVV+ ++PK+  N D
Sbjct: 114 PNNVNTLPYPLRLSARGPARYFRKREEWRITDMLFSPMVLMLVVPLVVMLILPKMTAN-D 172

Query: 250 PEEMRRAQEEMR 261
           P E+++  E M+
Sbjct: 173 P-ELKKEMENMQ 183

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
225430458	210	PREDICTED: UPF0480 protein At4g32130 [Vi	0.751	0.995	0.742	4e-87
255548850	210	conserved hypothetical protein [Ricinus	0.748	0.990	0.770	2e-85
224089292	211	predicted protein [Populus trichocarpa]	0.751	0.990	0.739	2e-81
357466123	210	hypothetical protein MTR_3g106570 [Medic	0.744	0.985	0.721	2e-80
356507608	209	PREDICTED: UPF0480 protein At4g32130-lik	0.730	0.971	0.728	4e-80
449437166	206	PREDICTED: ER membrane protein complex s	0.669	0.902	0.770	6e-80
388495528	210	unknown [Medicago truncatula]	0.744	0.985	0.716	8e-80
224141923	212	predicted protein [Populus trichocarpa]	0.751	0.985	0.739	2e-79
351727104	213	uncharacterized protein LOC100527020 pre	0.730	0.953	0.713	2e-78
388492220	209	unknown [Lotus japonicus]	0.730	0.971	0.718	2e-78

>gi|225430458|ref|XP_002285487.1| PREDICTED: UPF0480 protein At4g32130 [Vitis vinifera] gi|296082124|emb|CBI21129.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 156/210 (74%), Positives = 185/210 (88%), Gaps = 1/210 (0%)

Query: 69  MASIIRSKSVLSVFFINLFLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKA 128
           MAS +RS  +  + F+ L  S +S+ +A+SSGS DG++I+GRVK+    +K FG PG K 
Sbjct: 1   MASTLRSSPIPLILFLQLCFSFLSTTLAISSGSSDGYTINGRVKIESTGVKGFGLPG-KT 59

Query: 129 SNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQA 188
           SNVKV+LNGG+ VTFLRPDGYFSF N+SAGTH+IEVAAIGYFFSPVRVDVSAR+PGK+QA
Sbjct: 60  SNVKVILNGGQWVTFLRPDGYFSFHNVSAGTHMIEVAAIGYFFSPVRVDVSARNPGKIQA 119

Query: 189 ALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENM 248
           ALTE R+GL ELVLE LREEQYYEIREPFSIMS+VKSPMGLMMGFML+V+FLMPKL+ENM
Sbjct: 120 ALTENRKGLTELVLEPLREEQYYEIREPFSIMSVVKSPMGLMMGFMLIVMFLMPKLVENM 179

Query: 249 DPEEMRRAQEEMRSQGVPSLANLIPGAGRS 278
           DPEEMRRAQEEMR+QGVPSL++L+PGAGR+
Sbjct: 180 DPEEMRRAQEEMRNQGVPSLSSLLPGAGRA 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548850|ref|XP_002515481.1| conserved hypothetical protein [Ricinus communis] gi|223545425|gb|EEF46930.1| conserved hypothetical protein [Ricinus communis]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 161/209 (77%), Positives = 182/209 (87%), Gaps = 1/209 (0%)

Query: 69  MASIIRSKSVLSVFFINLFLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKA 128
           M SI+R K V  + F    +SL+  A+AVSSGS DG SI+GRVK+ G+ +K FG PG K 
Sbjct: 1   MGSILRWKPVNLILFAQFCVSLLLPALAVSSGSSDGHSINGRVKIGGLGIKGFGLPG-KL 59

Query: 129 SNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQA 188
           S+VKVVLNGG+++TFLRPDGYFSF N+ AGTHLIEVAAIGYFFSPVRVDVSAR PGKVQA
Sbjct: 60  SSVKVVLNGGQNITFLRPDGYFSFHNVPAGTHLIEVAAIGYFFSPVRVDVSARFPGKVQA 119

Query: 189 ALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENM 248
           ALTE RRGLNELVLE +R+EQYYEIREPFSIMS+VKSPMGLM+GFMLVV+FLMPKLMENM
Sbjct: 120 ALTENRRGLNELVLEPMRDEQYYEIREPFSIMSVVKSPMGLMVGFMLVVMFLMPKLMENM 179

Query: 249 DPEEMRRAQEEMRSQGVPSLANLIPGAGR 277
           DPEEMRRAQEEMR QGVPSLA+L+PGA R
Sbjct: 180 DPEEMRRAQEEMRQQGVPSLASLLPGAQR 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089292|ref|XP_002308678.1| predicted protein [Populus trichocarpa] gi|222854654|gb|EEE92201.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 156/211 (73%), Positives = 185/211 (87%), Gaps = 2/211 (0%)

Query: 69  MASIIRSKSVLSVFFINLFLSLVSSAVAVSSGS-GDGFSISGRVKLPGMSLKAFGSPGGK 127
           MASI+R K V+ + F+ L LSL+S ++A++ GS GDG++I+GRVK+PG+  K  G   GK
Sbjct: 1   MASIVRLKPVILLLFVELCLSLLSPSLAITFGSSGDGYAINGRVKIPGIGTKGLGG-HGK 59

Query: 128 ASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQ 187
            SNVKV+LNGG+HVTFLRPDGYFSF N+ AGTHLIEV AIGYFFSPVRVDVSAR PGKVQ
Sbjct: 60  VSNVKVLLNGGQHVTFLRPDGYFSFHNVPAGTHLIEVDAIGYFFSPVRVDVSARFPGKVQ 119

Query: 188 AALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMEN 247
           A LTE RR L+E+VLE L+EEQYYEIREPFSIMS+VKSPMGLMMGFM++V+F+MPKLMEN
Sbjct: 120 ATLTEKRRSLSEMVLEPLKEEQYYEIREPFSIMSIVKSPMGLMMGFMVLVMFIMPKLMEN 179

Query: 248 MDPEEMRRAQEEMRSQGVPSLANLIPGAGRS 278
           MDPEEMRRAQEEMR+QGVPSLA+++PGA RS
Sbjct: 180 MDPEEMRRAQEEMRNQGVPSLASILPGAARS 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466123|ref|XP_003603346.1| hypothetical protein MTR_3g106570 [Medicago truncatula] gi|355492394|gb|AES73597.1| hypothetical protein MTR_3g106570 [Medicago truncatula] gi|388502904|gb|AFK39518.1| unknown [Medicago truncatula]

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 153/212 (72%), Positives = 175/212 (82%), Gaps = 5/212 (2%)

Query: 69  MASIIRSKSVLSVFFINLFLSLVSSAVAVSS--GSGDGFSISGRVKLPGMSLKAFGSPGG 126
           MAS   +KS+    FI    S++ S+ A S   GS DG++I GRVK+P    K F  P  
Sbjct: 1   MASF--TKSLFLFLFIQFCFSILPSSFAQSPTPGSSDGYTIYGRVKIPSFGTKEFSLPA- 57

Query: 127 KASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKV 186
           K SNVKV+LNGG+ V+FLRPDGYFSF N+ AGTHLIEVAA GYFFSPVRVDVSAR+PGK+
Sbjct: 58  KVSNVKVILNGGQRVSFLRPDGYFSFHNVPAGTHLIEVAAKGYFFSPVRVDVSARNPGKI 117

Query: 187 QAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLME 246
           QAALTE RRGL+E VLE L+EEQYYEIREPFSIMS+VKSPMGLMMGFML+VVFLMPKLME
Sbjct: 118 QAALTENRRGLSEFVLEPLKEEQYYEIREPFSIMSIVKSPMGLMMGFMLIVVFLMPKLME 177

Query: 247 NMDPEEMRRAQEEMRSQGVPSLANLIPGAGRS 278
           NMDPEEM+RAQEEMR+QGVPSLA+L+PGA RS
Sbjct: 178 NMDPEEMKRAQEEMRNQGVPSLASLLPGAARS 209

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507608|ref|XP_003522556.1| PREDICTED: UPF0480 protein At4g32130-like [Glycine max]

 Score =  303 bits (777), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 150/206 (72%), Positives = 177/206 (85%), Gaps = 3/206 (1%)

Query: 75  SKSVLSVFFINLFLSLV--SSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVK 132
           ++SV  + FI L  SL+  S A + ++GS +G++I GRVK+P +  K +  PG K SNVK
Sbjct: 4   TRSVFLLLFIQLCFSLLPLSFAQSPATGSTEGYTIYGRVKIPSVGTKDYILPG-KISNVK 62

Query: 133 VVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTE 192
           V+LNGG+ VTFLRPDGYFSF N+ AGTHLIEVAAIGYFFSPVRVDVSARH GK+QAALTE
Sbjct: 63  VILNGGQRVTFLRPDGYFSFHNVPAGTHLIEVAAIGYFFSPVRVDVSARHHGKIQAALTE 122

Query: 193 TRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEE 252
            RRGL+E VLE L++EQY+E+REPFSIMS+VKSPMGLMMGFML+VVFLMPKLMENMDPEE
Sbjct: 123 NRRGLSEFVLEPLKDEQYFEVREPFSIMSIVKSPMGLMMGFMLIVVFLMPKLMENMDPEE 182

Query: 253 MRRAQEEMRSQGVPSLANLIPGAGRS 278
           MRRAQEEMR+QGVPSLA+L+PGA RS
Sbjct: 183 MRRAQEEMRNQGVPSLASLLPGAARS 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437166|ref|XP_004136363.1| PREDICTED: ER membrane protein complex subunit 7 homolog [Cucumis sativus] gi|449517192|ref|XP_004165630.1| PREDICTED: ER membrane protein complex subunit 7 homolog [Cucumis sativus]

 Score =  303 bits (776), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 144/187 (77%), Positives = 172/187 (91%), Gaps = 1/187 (0%)

Query: 92  SSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFS 151
           +S+ A+SSGSGDG++I GRVK+P  +LK FG PG K SN+KV+LNGG+ VTFLRPDGYFS
Sbjct: 20  TSSHAISSGSGDGYTIYGRVKIPSNTLKGFGLPG-KTSNIKVILNGGQRVTFLRPDGYFS 78

Query: 152 FQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEQLREEQYY 211
           F N+ AGTHLIEVAA+G FFSPVRVDVSAR+PGKVQAALTE RR L+ELVLE LR+E+YY
Sbjct: 79  FHNVPAGTHLIEVAALGSFFSPVRVDVSARNPGKVQAALTENRRVLSELVLEPLRDEEYY 138

Query: 212 EIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQEEMRSQGVPSLANL 271
           E+REPF+IMS+VKSPMGLM+GFM++VVFLMPKLMEN+DPEEMRRAQEEMR+QGVP+L++L
Sbjct: 139 EVREPFNIMSVVKSPMGLMVGFMVIVVFLMPKLMENIDPEEMRRAQEEMRNQGVPTLSSL 198

Query: 272 IPGAGRS 278
           +PGAGRS
Sbjct: 199 LPGAGRS 205

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495528|gb|AFK35830.1| unknown [Medicago truncatula]

 Score =  303 bits (775), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 152/212 (71%), Positives = 174/212 (82%), Gaps = 5/212 (2%)

Query: 69  MASIIRSKSVLSVFFINLFLSLVSSAVAVSS--GSGDGFSISGRVKLPGMSLKAFGSPGG 126
           MAS   +KS+    FI    S++ S+ A S   GS DG++I GRVK+P    K F  P  
Sbjct: 1   MASF--TKSLFLFLFIQFCFSILPSSFAQSPTPGSSDGYTIYGRVKIPSFGTKEFSLPA- 57

Query: 127 KASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKV 186
           K SNVKV+LNGG+ V+FLRPDGYFSF N+ AGTHLIEV A GYFFSPVRVDVSAR+PGK+
Sbjct: 58  KVSNVKVILNGGQRVSFLRPDGYFSFHNVPAGTHLIEVVAKGYFFSPVRVDVSARNPGKI 117

Query: 187 QAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLME 246
           QAALTE RRGL+E VLE L+EEQYYEIREPFSIMS+VKSPMGLMMGFML+VVFLMPKLME
Sbjct: 118 QAALTENRRGLSEFVLEPLKEEQYYEIREPFSIMSIVKSPMGLMMGFMLIVVFLMPKLME 177

Query: 247 NMDPEEMRRAQEEMRSQGVPSLANLIPGAGRS 278
           NMDPEEM+RAQEEMR+QGVPSLA+L+PGA RS
Sbjct: 178 NMDPEEMKRAQEEMRNQGVPSLASLLPGAARS 209

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141923|ref|XP_002324310.1| predicted protein [Populus trichocarpa] gi|118482228|gb|ABK93042.1| unknown [Populus trichocarpa] gi|222865744|gb|EEF02875.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 156/211 (73%), Positives = 184/211 (87%), Gaps = 2/211 (0%)

Query: 69  MASIIRSKSVLSVFFINLFLSLVSSAVAVSSGS-GDGFSISGRVKLPGMSLKAFGSPGGK 127
           MAS +RSK V+ +  + L LSL+S ++A+SSGS GDG++I+GRVK+PG+  K  G   GK
Sbjct: 1   MASFVRSKPVILLLVVQLCLSLLSPSLAISSGSSGDGYAINGRVKIPGIDAKGLGG-HGK 59

Query: 128 ASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQ 187
            SNVKV+LNGG+HVTFLRPDGYFSF N+ AGTHLIEV A GYFFSPVRVDVSAR PGKVQ
Sbjct: 60  ISNVKVILNGGQHVTFLRPDGYFSFHNVPAGTHLIEVVATGYFFSPVRVDVSARFPGKVQ 119

Query: 188 AALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMEN 247
           A LTE RR L+E+VLE L+EEQYYEIREPFSIMSLVKSPMGLMMGFM++V+F+MPKLMEN
Sbjct: 120 ATLTEKRRSLSEMVLEPLKEEQYYEIREPFSIMSLVKSPMGLMMGFMVLVMFVMPKLMEN 179

Query: 248 MDPEEMRRAQEEMRSQGVPSLANLIPGAGRS 278
           MDPEEM+RAQEEMR+QGVPSLA+++PGA RS
Sbjct: 180 MDPEEMKRAQEEMRNQGVPSLASMLPGAARS 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727104|ref|NP_001237405.1| uncharacterized protein LOC100527020 precursor [Glycine max] gi|255631380|gb|ACU16057.1| unknown [Glycine max]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/206 (71%), Positives = 176/206 (85%), Gaps = 3/206 (1%)

Query: 75  SKSVLSVFFINL--FLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVK 132
           ++S++   FI L  +L  +S A + ++GS +G++I GRVK+P +  K +  PG K SNVK
Sbjct: 4   TRSLILCLFIQLCFYLLPLSFAQSPATGSAEGYTIYGRVKIPSVGTKDYILPG-KISNVK 62

Query: 133 VVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTE 192
           V+LNGG+ VTFLRPDGYF+F N+ AGTHLIEVAAIGYFFS VRVDVSARH GK+QAALTE
Sbjct: 63  VILNGGQRVTFLRPDGYFAFHNVPAGTHLIEVAAIGYFFSLVRVDVSARHHGKIQAALTE 122

Query: 193 TRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEE 252
            RRGL+E VLE L++EQYYE+REPFSIMS+VKSPMGLMMGFML+VVFLMPKLMENMDPEE
Sbjct: 123 NRRGLSEFVLEPLKDEQYYEVREPFSIMSIVKSPMGLMMGFMLIVVFLMPKLMENMDPEE 182

Query: 253 MRRAQEEMRSQGVPSLANLIPGAGRS 278
           MRRAQEEMR+QGVPSLA+L+PGA RS
Sbjct: 183 MRRAQEEMRNQGVPSLASLLPGAARS 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492220|gb|AFK34176.1| unknown [Lotus japonicus]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 148/206 (71%), Positives = 173/206 (83%), Gaps = 3/206 (1%)

Query: 75  SKSVLSVFFINLFLSLVSSAVAVS--SGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVK 132
           +KS++    I L  SL+  A A S  +GS +GF+I GRV++P +  K +  PG K SNVK
Sbjct: 4   TKSLILFLLIQLCSSLLPFAFAQSPATGSTEGFTIYGRVRIPSLGSKDYILPG-KVSNVK 62

Query: 133 VVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTE 192
           V+LN GE VTFLRPDGYFSF N+ AGTHLIEV AIGYFFSPVRVDVSAR+PGK+QAALTE
Sbjct: 63  VILNSGERVTFLRPDGYFSFHNVPAGTHLIEVTAIGYFFSPVRVDVSARNPGKIQAALTE 122

Query: 193 TRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEE 252
           TRRGL+E VLE L+ E YYEIREPFS+MS+VKSPMGLMMGFM++VVFLMPKLMENMDPEE
Sbjct: 123 TRRGLSEFVLEPLKPEHYYEIREPFSVMSIVKSPMGLMMGFMVIVVFLMPKLMENMDPEE 182

Query: 253 MRRAQEEMRSQGVPSLANLIPGAGRS 278
           M+RAQEEMRSQGVPSLA+L+PG+ RS
Sbjct: 183 MKRAQEEMRSQGVPSLASLLPGSARS 208

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2059521	210	AT2G25310 "AT2G25310" [Arabido	0.744	0.985	0.576	8.6e-56
TAIR|locus:2116642	202	AT4G32130 "AT4G32130" [Arabido	0.715	0.985	0.564	1.9e-53
UNIPROTKB|I3LRK6	241	C7H15orf24 "Uncharacterized pr	0.528	0.609	0.282	1.4e-09
ZFIN|ZDB-GENE-080723-71	259	zgc:195050 "zgc:195050" [Danio	0.514	0.552	0.287	2.1e-09
UNIPROTKB|Q9NPA0	242	EMC7 "ER membrane protein comp	0.528	0.607	0.275	2.8e-09
UNIPROTKB|Q4R5V2	242	EMC7 "ER membrane protein comp	0.528	0.607	0.275	2.8e-09
UNIPROTKB|A5PJA8	241	EMC7 "ER membrane protein comp	0.528	0.609	0.275	3.6e-09
UNIPROTKB|A7YWQ2	241	C10H15orf24 "ER membrane prote	0.528	0.609	0.275	3.6e-09
MGI|MGI:1920274	241	Emc7 "ER membrane protein comp	0.528	0.609	0.275	3.6e-09
RGD|1305045	241	RGD1305045 "similar to hypothe	0.528	0.609	0.275	3.6e-09

TAIR|locus:2059521 AT2G25310 "AT2G25310" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 121/210 (57%), Positives = 141/210 (67%)

Query:    69 MASIIRSKSVLSVFFINXXXXXXXXXXXXXXXXXXXXXXXXRVKLPGMSLKAFGSPGGKA 128
             M SIIRS   L+   +                         RVK+P  ++   G    K 
Sbjct:     3 MTSIIRSSPTLAFIVLQICFIFFASTFPCSSGSEDSYTITGRVKIPPSNV--IGHIA-KF 59

Query:   129 SNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQA 188
             SNVKV+LNGG+ +TFLRPDGYF+F  + AGTHLIEV+A+GYFFSPVRVDVSARH GKVQA
Sbjct:    60 SNVKVILNGGQKITFLRPDGYFTFHEVPAGTHLIEVSAMGYFFSPVRVDVSARHRGKVQA 119

Query:   189 ALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPXXXXXXXXXXXXXXXPKLMENM 248
              LTETRR L ELVLE L+EEQYYEIREPF+IMS+VKSP               PKLMEN+
Sbjct:   120 TLTETRRSLTELVLEPLKEEQYYEIREPFNIMSIVKSPMGLMVGFMVVVVFLMPKLMENI 179

Query:   249 DPEEMRRAQEEMRSQGVPSLANLIPGAGRS 278
             DPEEM++AQEEMR QGVPSL +L+PGAG S
Sbjct:   180 DPEEMKQAQEEMRRQGVPSLTSLLPGAGAS 209

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2116642 AT4G32130 "AT4G32130" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 118/209 (56%), Positives = 140/209 (66%)

Query:    69 MASIIRSKSVL--SVFFINXXXXXXXXXXXXXXXXXXXXXXXXRVKLPGMSLKAFGSPGG 126
             MA I RS S++  S+FF                          RV++P  ++   G    
Sbjct:     1 MAPIFRSTSLIAFSLFFF-----FFASTLPISSGSEDSYTITGRVRVPASTV--IGH-AA 52

Query:   127 KASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKV 186
             K SN+KV+LNGG+HVTFLRPDGYF+F  + AGTHLIEV A+GYFFSPVRVDVSARH GKV
Sbjct:    53 KFSNIKVILNGGQHVTFLRPDGYFTFHKVPAGTHLIEVYALGYFFSPVRVDVSARHRGKV 112

Query:   187 QAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPXXXXXXXXXXXXXXXPKLME 246
             QA LTETRR L ELVLE LR EQYYE+REPFS+MS+VKSP               PKLME
Sbjct:   113 QATLTETRRSLTELVLEPLRAEQYYEMREPFSVMSIVKSPMGLMVGFMVVVVFLMPKLME 172

Query:   247 NMDPEEMRRAQEEMRSQGVPSLANLIPGA 275
             N+DPEEM+ AQE+MRSQGVPSL +L+P +
Sbjct:   173 NIDPEEMKSAQEQMRSQGVPSLTSLLPAS 201

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

UNIPROTKB|I3LRK6 C7H15orf24 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 153 (58.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 44/156 (28%), Positives = 76/156 (48%)

Query:   110 RVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGY 169
             R K+ G ++     P    S  +V+++G EHV FL+ DG F   ++ +G++++EV +  Y
Sbjct:    43 RFKIEGRAVVPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVISPAY 102

Query:   170 FFSPVRVDVSARHPGKVQAAL------TETRRGLNELVLEQLREEQYYEIREPFSIMSLV 223
              F PVRVD++++  GK++A        +E  R    L ++      Y+  RE +     +
Sbjct:   103 RFDPVRVDITSK--GKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFL 160

Query:   224 KSPXXXXXXXXXXXXXXXPKLMENMDPEEMRRAQEE 259
              +P               PK++   DPE MRR  E+
Sbjct:   161 MNPMVMMMVLPLLIFVLLPKVVNTSDPE-MRREMEQ 195

GO:0030246 "carbohydrate binding" evidence=IEA

ZFIN|ZDB-GENE-080723-71 zgc:195050 "zgc:195050" [Danio rerio (taxid:7955)]

 Score = 153 (58.9 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 46/160 (28%), Positives = 83/160 (51%)

Query:   110 RVKLPGMSLKAFGSPGGKA----SNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVA 165
             RV + G +L     PG +A    S+ +V+L+G +HV FLR DG F+  N+ +G++++E++
Sbjct:    40 RVHVSGRALV----PGVRAQDWISSARVLLDGEKHVGFLRDDGSFTVSNVPSGSYVLEIS 95

Query:   166 AIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLE---QLRE---EQYYEIREPFSI 219
             +  Y F PVRVD+++   GK++A +    +    ++L    Q+R     +++  RE +  
Sbjct:    96 SPTYRFLPVRVDITSA--GKMRARVVNYIQTSEVILLPYPLQMRSVGLHRFFTERESWGW 153

Query:   220 MSLVKSPXXXXXXXXXXXXXXXPKLMENMDPEEMRRAQEE 259
                + +P               P++    DPE MRR  E+
Sbjct:   154 TDFILNPMVLMMVLPLLVILLLPRVFNPSDPE-MRREMEQ 192

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9NPA0 EMC7 "ER membrane protein complex subunit 7" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 43/156 (27%), Positives = 76/156 (48%)

Query:   110 RVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGY 169
             R K+ G ++     P    S  +V+++G EHV FL+ DG F   ++ +G++++EV +  Y
Sbjct:    44 RFKIEGRAVVPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAY 103

Query:   170 FFSPVRVDVSARHPGKVQAAL------TETRRGLNELVLEQLREEQYYEIREPFSIMSLV 223
              F PVRVD++++  GK++A        +E  R    L ++      Y+  RE +     +
Sbjct:   104 RFDPVRVDITSK--GKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFL 161

Query:   224 KSPXXXXXXXXXXXXXXXPKLMENMDPEEMRRAQEE 259
              +P               PK++   DP+ MRR  E+
Sbjct:   162 MNPMVMMMVLPLLIFVLLPKVVNTSDPD-MRREMEQ 196

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=NAS

GO:0017076 "purine nucleotide binding" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IDA;NAS

GO:0072546 "ER membrane protein complex" evidence=IDA

UNIPROTKB|Q4R5V2 EMC7 "ER membrane protein complex subunit 7" [Macaca fascicularis (taxid:9541)]

 Score = 151 (58.2 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 43/156 (27%), Positives = 76/156 (48%)

Query:   110 RVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGY 169
             R K+ G ++     P    S  +V+++G EHV FL+ DG F   ++ +G++++EV +  Y
Sbjct:    44 RFKIEGRAVVPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVVSPAY 103

Query:   170 FFSPVRVDVSARHPGKVQAAL------TETRRGLNELVLEQLREEQYYEIREPFSIMSLV 223
              F PVRVD++++  GK++A        +E  R    L ++      Y+  RE +     +
Sbjct:   104 RFDPVRVDITSK--GKMRARYVNHIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFL 161

Query:   224 KSPXXXXXXXXXXXXXXXPKLMENMDPEEMRRAQEE 259
              +P               PK++   DP+ MRR  E+
Sbjct:   162 MNPMVMMMVLPLLIFVLLPKVVNTSDPD-MRREMEQ 196

GO:0016021 "integral to membrane" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

UNIPROTKB|A5PJA8 EMC7 "ER membrane protein complex subunit 7" [Bos taurus (taxid:9913)]

 Score = 150 (57.9 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 43/156 (27%), Positives = 76/156 (48%)

Query:   110 RVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGY 169
             R K+ G ++     P    S  +V+++G EHV FL+ DG F   ++ +G++++EV +  Y
Sbjct:    43 RFKIEGRAVVPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVISPAY 102

Query:   170 FFSPVRVDVSARHPGKVQAAL------TETRRGLNELVLEQLREEQYYEIREPFSIMSLV 223
              F PVRVD++++  GK++A        +E  R    L ++      Y+  RE +     +
Sbjct:   103 RFDPVRVDITSK--GKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFL 160

Query:   224 KSPXXXXXXXXXXXXXXXPKLMENMDPEEMRRAQEE 259
              +P               PK++   DP+ MRR  E+
Sbjct:   161 MNPMVMMMVLPLLIFVLLPKVVNTSDPD-MRREMEQ 195

GO:0072546 "ER membrane protein complex" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=IEA

UNIPROTKB|A7YWQ2 C10H15orf24 "ER membrane protein complex subunit 7" [Bos taurus (taxid:9913)]

 Score = 150 (57.9 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 43/156 (27%), Positives = 76/156 (48%)

Query:   110 RVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGY 169
             R K+ G ++     P    S  +V+++G EHV FL+ DG F   ++ +G++++EV +  Y
Sbjct:    43 RFKIEGRAVVPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVISPAY 102

Query:   170 FFSPVRVDVSARHPGKVQAAL------TETRRGLNELVLEQLREEQYYEIREPFSIMSLV 223
              F PVRVD++++  GK++A        +E  R    L ++      Y+  RE +     +
Sbjct:   103 RFDPVRVDITSK--GKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFL 160

Query:   224 KSPXXXXXXXXXXXXXXXPKLMENMDPEEMRRAQEE 259
              +P               PK++   DP+ MRR  E+
Sbjct:   161 MNPMVMMMVLPLLIFVLLPKVVNTSDPD-MRREMEQ 195

GO:0072546 "ER membrane protein complex" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

MGI|MGI:1920274 Emc7 "ER membrane protein complex subunit 7" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 43/156 (27%), Positives = 76/156 (48%)

Query:   110 RVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGY 169
             R K+ G ++     P    S  +V+++G EHV FL+ DG F   ++ +G++++EV +  Y
Sbjct:    43 RFKIEGRAVVPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVISPAY 102

Query:   170 FFSPVRVDVSARHPGKVQAAL------TETRRGLNELVLEQLREEQYYEIREPFSIMSLV 223
              F PVRVD++++  GK++A        +E  R    L ++      Y+  RE +     +
Sbjct:   103 KFDPVRVDITSK--GKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFL 160

Query:   224 KSPXXXXXXXXXXXXXXXPKLMENMDPEEMRRAQEE 259
              +P               PK++   DP+ MRR  E+
Sbjct:   161 MNPMVMMMVLPLLIFVLLPKVVNTSDPD-MRREMEQ 195

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0072546 "ER membrane protein complex" evidence=ISO

RGD|1305045 RGD1305045 "similar to hypothetical protein" [Rattus norvegicus (taxid:10116)]

 Score = 150 (57.9 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 43/156 (27%), Positives = 76/156 (48%)

Query:   110 RVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGY 169
             R K+ G ++     P    S  +V+++G EHV FL+ DG F   ++ +G++++EV +  Y
Sbjct:    43 RFKIEGRAVVPGVKPQDWISAARVLVDGEEHVGFLKTDGSFVVHDIPSGSYVVEVISPAY 102

Query:   170 FFSPVRVDVSARHPGKVQAAL------TETRRGLNELVLEQLREEQYYEIREPFSIMSLV 223
              F PVRVD++++  GK++A        +E  R    L ++      Y+  RE +     +
Sbjct:   103 KFDPVRVDITSK--GKMRARYVNYIKTSEVVRLPYPLQMKSSGPPSYFIKRESWGWTDFL 160

Query:   224 KSPXXXXXXXXXXXXXXXPKLMENMDPEEMRRAQEE 259
              +P               PK++   DP+ MRR  E+
Sbjct:   161 MNPMVMMMVLPLLIFVLLPKVVNTSDPD-MRREMEQ 195

GO:0030246 "carbohydrate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032765001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (260 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
pfam09430	115	pfam09430, DUF2012, Protein of unknown function (D	4e-33
pfam13620	81	pfam13620, CarboxypepD_reg, Carboxypeptidase regul	4e-05

>gnl|CDD|220238 pfam09430, DUF2012, Protein of unknown function (DUF2012)

 Score =  117 bits (294), Expect = 4e-33
 Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 6/108 (5%)

Query: 129 SNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSAR-HPGKVQ 187
           SN +V L+GG+HV FLR DG F F N+ AG++L++V + GY F PVRVDVSA+     VQ
Sbjct: 8   SNTRVTLDGGQHVVFLRRDGSFVFHNVPAGSYLLDVESPGYRFEPVRVDVSAKGKVRAVQ 67

Query: 188 AALTETRRG-----LNELVLEQLREEQYYEIREPFSIMSLVKSPMGLM 230
             + ET           LV++ L   +Y+E RE FSI SL+KSPM LM
Sbjct: 68  LNIVETYEVNQPLVPYPLVIKPLGRHRYFEPREQFSITSLLKSPMVLM 115

This is a eukaryotic family of uncharacterized proteins. Length = 115

>gnl|CDD|222268 pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 13/68 (19%)

Query: 106 SISGRVKLPGMSLKAFGSPGGKASNVKVVL----NGGEHVTFLRPDGYFSFQNMSAGTHL 161
           +ISG V          G+P        V L     G    T    DG FS   +  GT+ 
Sbjct: 1   TISGTVTDAS------GAP---IPGATVTLTNADTGTVRGTTTDADGRFSLTGLPPGTYT 51

Query: 162 IEVAAIGY 169
           + V+A GY
Sbjct: 52  LTVSAPGY 59

Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
PF09430	123	DUF2012: Protein of unknown function (DUF2012); In	99.95
KOG3306	185	consensus Predicted membrane protein [Function unk	99.89
KOG3306	185	consensus Predicted membrane protein [Function unk	99.32
PF13715	88	DUF4480: Domain of unknown function (DUF4480)	99.06
PF13620	82	CarboxypepD_reg: Carboxypeptidase regulatory-like	98.91
PF14686	95	fn3_3: Polysaccharide lyase family 4, domain II; P	98.4
cd03863	375	M14_CPD_II The second carboxypeptidase (CP)-like d	98.35
cd03864	392	M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als	98.34
cd06245	363	M14_CPD_III The third carboxypeptidase (CP)-like d	98.26
cd03867	395	M14_CPZ Peptidase M14-like domain of carboxypeptid	98.13
cd03858	374	M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub	98.12
cd03865	402	M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C	98.08
cd03868	372	M14_CPD_I The first carboxypeptidase (CP)-like dom	97.87
cd03866	376	M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM	97.8
PRK15036	137	hydroxyisourate hydrolase; Provisional	96.92
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	96.71
KOG1948	1165	consensus Metalloproteinase-related collagenase pM	96.7
PF08308	71	PEGA: PEGA domain; InterPro: IPR013229 This domain	96.58
PF08400	134	phage_tail_N: Prophage tail fibre N-terminal; Inte	96.32
cd03869	405	M14_CPX_like Peptidase M14-like domain of carboxyp	95.4
KOG2649	500	consensus Zinc carboxypeptidase [General function	94.3
KOG1948	1165	consensus Metalloproteinase-related collagenase pM	94.21
cd00421	146	intradiol_dioxygenase Intradiol dioxygenases catal	93.87
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	93.86
PF07210	85	DUF1416: Protein of unknown function (DUF1416); In	93.16
PF11008	117	DUF2846: Protein of unknown function (DUF2846); In	89.38
COG3485	226	PcaH Protocatechuate 3,4-dioxygenase beta subunit	85.64
PF12866	222	DUF3823: Protein of unknown function (DUF3823); In	83.05
PF10794	131	DUF2606: Protein of unknown function (DUF2606); In	82.92
PF10670	215	DUF4198: Domain of unknown function (DUF4198)	82.7
cd03459	158	3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD)	81.69

>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators

Probab=99.95  E-value=2.1e-28  Score=202.11  Aligned_cols=106  Identities=42%  Similarity=0.613  Sum_probs=90.5

Q ss_pred             CCCceeEEEEEcCcee---EEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcCCCC---ceEEEEecccC---
Q 023727          125 GGKASNVKVVLNGGEH---VTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPG---KVQAALTETRR---  195 (278)
Q Consensus       125 ~~~~s~t~V~L~g~~~---~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~~~G---~VrA~~~e~~~---  195 (278)
                      ..|.++++|+|+++++   .+++++||+|+|+|||+|+|+|+|+|++|.|.++||||..+.+.   ++.+++...+.   
T Consensus         4 ~~~~~~t~V~L~~g~~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~F~~~RVdV~~~~~~~~~~~~~~~~~~~~~~~   83 (123)
T PF09430_consen    4 NNLPSSTRVTLNGGQYRPISAFVRSDGSFVFHNVPPGSYLLEVHSPDYVFPPYRVDVSSSGKIRARKVNYWQPYRGNPWS   83 (123)
T ss_pred             ccCCCCEEEEEeCCCccceEEEecCCCEEEeCCCCCceEEEEEECCCccccCEEEEEecCCCCCceEEEeecCccccccc
Confidence            3678999999999988   99999999999999999999999999999999999999953211   23333333222   


Q ss_pred             -----ccccEEEEeccccceeeeccccChhhhccCHHHHH
Q 023727          196 -----GLNELVLEQLREEQYYEIREPFSIMSLVKSPMGLM  230 (278)
Q Consensus       196 -----~l~PLvv~p~~~~~Yfe~Re~fsi~~lLkNPM~LM  230 (278)
                           ..+||+++|+++++|||+|++|++++||||||+||
T Consensus        84 ~~~~~~~~Pl~l~~~~~~~Yfe~r~~fsi~~lLknPM~Lm  123 (123)
T PF09430_consen   84 NSGESLPYPLVLKPVGRKQYFEEREGFSILSLLKNPMVLM  123 (123)
T ss_pred             ccCcccCccEEEEEcccccCeEECCCCCHHHHhcCCeecC
Confidence                 24599999999999999999999999999999987

A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].

>KOG3306 consensus Predicted membrane protein [Function unknown]

Probab=99.89  E-value=2.2e-23  Score=181.08  Aligned_cols=146  Identities=27%  Similarity=0.432  Sum_probs=128.0

Q ss_pred             CCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcCCCCceEEEEecccCc------ccc
Q 023727          126 GKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRG------LNE  199 (278)
Q Consensus       126 ~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~~~G~VrA~~~e~~~~------l~P  199 (278)
                      .|++.++++++++++..|.+.||+|..+++|.|+|.++|.+.+|.|.+.||++...  |+.+|++...-+.      .+|
T Consensus         8 r~~~~~~liv~~~~f~gF~~td~sf~~~d~ptgty~V~V~~s~vi~~p~rv~i~~k--gk~rarkvtflrp~~~~tl~yp   85 (185)
T KOG3306|consen    8 RSHSAARLIVNGGEFVGFASTDGSFGSEDSPTGTYRVEVPSSDVIGHPARVSITKK--GKNRARKVTFLRPDGYFTLPYP   85 (185)
T ss_pred             ccccceeeEeccceEEEEEeeccccccccCCceeEEEEecCcceeecceEEEeehh--hcccceEEEEEccCceEEeccc
Confidence            68899999999999999999999999999999999999999999999999999974  7888877544332      347


Q ss_pred             EEEEeccccceeeeccccChhhhccCHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHH-HHHhCCCCchhhhCCC
Q 023727          200 LVLEQLREEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQE-EMRSQGVPSLANLIPG  274 (278)
Q Consensus       200 Lvv~p~~~~~Yfe~Re~fsi~~lLkNPM~LM~lv~l~l~~~mPKLme~mDPEe~ke~qe-em~~~~~p~~s~ll~g  274 (278)
                      +.+.+.+...||+.|+.|++.+++|+||+||++.+++.++++||+. .+|||+.+|+.- ++.+..+|++++||..
T Consensus        86 l~l~~~~p~~YF~~Re~w~~td~l~~pmvLm~v~plL~~Lvlpk~~-~~dp~~~~e~~~m~f~~v~vp~v~e~m~~  160 (185)
T KOG3306|consen   86 LRLKSSGPPSYFIVREDWSATDRLKVPMVLMEVRPLLTELVLPKMV-INDPEMKKEMENMQFPKVDVPDVSEMMTN  160 (185)
T ss_pred             eeecccCCccceEEEeEeeeeecccCcchHHHHHHHHHHHhcCccc-cCChhhhhhhhhcCceeeecchHHHHhhh
Confidence            9999999999999999999999999999999999999999999996 679997766641 2346689999876643

>KOG3306 consensus Predicted membrane protein [Function unknown]

Probab=99.32  E-value=5.5e-14  Score=122.72  Aligned_cols=182  Identities=31%  Similarity=0.295  Sum_probs=142.6

Q ss_pred             cchhhcccchhHHHHHHHHHHHhhhcceeeccCCCCceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCC
Q 023727           68 HMASIIRSKSVLSVFFINLFLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPD  147 (278)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~s~~~~~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~d  147 (278)
                      -|+.|.++.+.+.+++...|+-.++.+. .|.++.+.++|+|+|.++..+-.+.  | .+.+.+++.++++++.+|+++|
T Consensus         2 ~m~~~~r~~~~~~liv~~~~f~gF~~td-~sf~~~d~ptgty~V~V~~s~vi~~--p-~rv~i~~kgk~rarkvtflrp~   77 (185)
T KOG3306|consen    2 PMVKIQRSHSAARLIVNGGEFVGFASTD-GSFGSEDSPTGTYRVEVPSSDVIGH--P-ARVSITKKGKNRARKVTFLRPD   77 (185)
T ss_pred             CcccccccccceeeEeccceEEEEEeec-cccccccCCceeEEEEecCcceeec--c-eEEEeehhhcccceEEEEEccC
Confidence            3677888887777777778877887777 7788889999999999998754221  1 4567788888899999999999


Q ss_pred             ccEEEccCCCeeEEEEEEecCcceeeEEEEEEcCCCCceEEEEecccCccccEEEEeccccceeeeccccChhhhccCHH
Q 023727          148 GYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEQLREEQYYEIREPFSIMSLVKSPM  227 (278)
Q Consensus       148 G~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~~~G~VrA~~~e~~~~l~PLvv~p~~~~~Yfe~Re~fsi~~lLkNPM  227 (278)
                      |.|+++-+   .++..+.-.+|.+  .|+|+.+..-+++.+.+.+..+.+..|++.+...-+|...++.           
T Consensus        78 ~~~tl~yp---l~l~~~~p~~YF~--~Re~w~~td~l~~pmvLm~v~plL~~Lvlpk~~~~dp~~~~e~-----------  141 (185)
T KOG3306|consen   78 GYFTLPYP---LRLKSSGPPSYFI--VREDWSATDRLKVPMVLMEVRPLLTELVLPKMVINDPEMKKEM-----------  141 (185)
T ss_pred             ceEEeccc---eeecccCCccceE--EEeEeeeeecccCcchHHHHHHHHHHHhcCccccCChhhhhhh-----------
Confidence            99999764   6777778888888  8888887666788888888777777777766666666655554           


Q ss_pred             HHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHhCCCCchhh
Q 023727          228 GLMMGFMLVVVFLMPKLMENMDPEEMRRAQEEMRSQGVPSLAN  270 (278)
Q Consensus       228 ~LM~lv~l~l~~~mPKLme~mDPEe~ke~qeem~~~~~p~~s~  270 (278)
                       .++.++..-+..++++|+++++|++++.||+++.++.|+...
T Consensus       142 -~~m~f~~v~vp~v~e~m~~lf~~k~~~ake~~~~~gv~s~kr  183 (185)
T KOG3306|consen  142 -ENMQFPKVDVPDVSEMMTNLFSGKSPGAKEKSKTGGVGSGKR  183 (185)
T ss_pred             -hhcCceeeecchHHHHhhhcccccCCcccccccCCCCCcccc
Confidence             344444556778899999999999999999999888877644

>PF13715 DUF4480: Domain of unknown function (DUF4480)

Probab=99.06  E-value=1.2e-09  Score=83.39  Aligned_cols=86  Identities=22%  Similarity=0.339  Sum_probs=67.4

Q ss_pred             EEEEEEECCC-CCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcCCCC
Q 023727          106 SISGRVKLPG-MSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPG  184 (278)
Q Consensus       106 tIsGrV~~p~-~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~~~G  184 (278)
                      +|+|+|.... ..|         +++++|.+.++...+.+|.+|.|.|. +++|.|.|.+++.||......|++.....-
T Consensus         1 ti~G~V~d~~t~~p---------l~~a~V~~~~~~~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~~~~~~i~~~~~~~~   70 (88)
T PF13715_consen    1 TISGKVVDSDTGEP---------LPGATVYLKNTKKGTVTDENGRFSIK-LPEGDYTLKISYIGYETKTITISVNSNKNT   70 (88)
T ss_pred             CEEEEEEECCCCCC---------ccCeEEEEeCCcceEEECCCeEEEEE-EcCCCeEEEEEEeCEEEEEEEEEecCCCEE
Confidence            5899999877 333         68899999999899999999999999 999999999999999988888888643211


Q ss_pred             ceEEEEecccCccccEE
Q 023727          185 KVQAALTETRRGLNELV  201 (278)
Q Consensus       185 ~VrA~~~e~~~~l~PLv  201 (278)
                      .+..++.+....+.+++
T Consensus        71 ~~~i~L~~~~~~L~eVv   87 (88)
T PF13715_consen   71 NLNIYLEPKSNQLDEVV   87 (88)
T ss_pred             EEEEEEeeCcccCCeEE
Confidence            34555554444455544

>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A

Probab=98.91  E-value=4.7e-09  Score=78.65  Aligned_cols=67  Identities=33%  Similarity=0.389  Sum_probs=52.5

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCceeEEEEEc----CceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeE-EEEEEc
Q 023727          106 SISGRVKLPGMSLKAFGSPGGKASNVKVVLN----GGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPV-RVDVSA  180 (278)
Q Consensus       106 tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~----g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~-RVdV~~  180 (278)
                      +|+|+|..+.++|         ++.++|.|.    +....+.+|.+|.|.|.++|+|.|.|.+...+|..... .|.|.+
T Consensus         1 tI~G~V~d~~g~p---------v~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~~~~v~v~~   71 (82)
T PF13620_consen    1 TISGTVTDATGQP---------VPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQTQENVTVTA   71 (82)
T ss_dssp             -EEEEEEETTSCB---------HTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EEEEEEEESS
T ss_pred             CEEEEEEcCCCCC---------cCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcceEEEEEEEEeC
Confidence            6999999886655         678898887    34668999999999999999999999999999999887 488875


Q ss_pred             C
Q 023727          181 R  181 (278)
Q Consensus       181 ~  181 (278)
                      .
T Consensus        72 ~   72 (82)
T PF13620_consen   72 G   72 (82)
T ss_dssp             S
T ss_pred             C
Confidence            3

>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A

Probab=98.40  E-value=1.9e-06  Score=68.92  Aligned_cols=73  Identities=29%  Similarity=0.299  Sum_probs=43.1

Q ss_pred             CceEEEEEEECCCCCCCCCCCCCCCceeEEEEEc---------CceeEEEecCCccEEEccCCCeeEEEEEEe----cCc
Q 023727          103 DGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLN---------GGEHVTFLRPDGYFSFQNMSAGTHLIEVAA----IGY  169 (278)
Q Consensus       103 ~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~---------g~~~~a~~~~dG~F~f~nVP~GsY~LeVss----~gy  169 (278)
                      ++.+|+|+|.+++.-.+.   +  .-..+-|-|.         +-+||+.+|.+|+|+|.||+||+|.|.+-.    -+|
T Consensus         1 ~RG~VsG~l~l~dg~~~~---~--~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g~~g~~   75 (95)
T PF14686_consen    1 QRGSVSGRLTLSDGVTNP---P--AGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADGIFGDY   75 (95)
T ss_dssp             G-BEEEEEEE---SS--T---T----S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE----TTE
T ss_pred             CCCEEEEEEEEccCcccC---c--cceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEecccCce
Confidence            367999999988762100   1  0134556665         348999999999999999999999999999    566


Q ss_pred             ceeeEEEEEEc
Q 023727          170 FFSPVRVDVSA  180 (278)
Q Consensus       170 ~F~p~RVdV~~  180 (278)
                      ......|.|.+
T Consensus        76 ~~~~~~ItV~~   86 (95)
T PF14686_consen   76 KVASDSITVSG   86 (95)
T ss_dssp             EEEEEEEEE-T
T ss_pred             EEecceEEEcC
Confidence            66567777764

>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3

Probab=98.35  E-value=2.1e-06  Score=83.53  Aligned_cols=68  Identities=19%  Similarity=0.111  Sum_probs=59.1

Q ss_pred             ceEEEEEEECCC-CCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcC
Q 023727          104 GFSISGRVKLPG-MSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSAR  181 (278)
Q Consensus       104 ~~tIsGrV~~p~-~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~  181 (278)
                      +..|+|+|.... +.|         +..++|.+.|..+.+.+|.||.|.+ .||+|+|+|+|++.||....+.|.|.+.
T Consensus       296 ~~gI~G~V~D~~~g~p---------l~~AtV~V~g~~~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~~~~~~v~V~~~  364 (375)
T cd03863         296 HRGVRGFVLDATDGRG---------ILNATISVADINHPVTTYKDGDYWR-LLVPGTYKVTASARGYDPVTKTVEVDSK  364 (375)
T ss_pred             cCeEEEEEEeCCCCCC---------CCCeEEEEecCcCceEECCCccEEE-ccCCeeEEEEEEEcCcccEEEEEEEcCC
Confidence            368999998764 333         6789999999989999999999998 6999999999999999999988888753

4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac

>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3

Probab=98.34  E-value=2.3e-06  Score=83.79  Aligned_cols=67  Identities=25%  Similarity=0.248  Sum_probs=60.1

Q ss_pred             eEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcC
Q 023727          105 FSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSAR  181 (278)
Q Consensus       105 ~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~  181 (278)
                      ..|+|+|....+.|         ++.++|.+.|..+.+.++.+|.| +++++||+|+|+|++.||......|.|...
T Consensus       316 ~gI~G~V~D~~g~p---------i~~A~V~v~g~~~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~~~t~~v~V~~~  382 (392)
T cd03864         316 QGIKGMVTDENNNG---------IANAVISVSGISHDVTSGTLGDY-FRLLLPGTYTVTASAPGYQPSTVTVTVGPA  382 (392)
T ss_pred             CeEEEEEECCCCCc---------cCCeEEEEECCccceEECCCCcE-EecCCCeeEEEEEEEcCceeEEEEEEEcCC
Confidence            48999999876554         67899999999899999999999 999999999999999999999999998754

4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu

>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3

Probab=98.26  E-value=4.8e-06  Score=80.65  Aligned_cols=67  Identities=31%  Similarity=0.428  Sum_probs=58.5

Q ss_pred             ceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcC
Q 023727          104 GFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSAR  181 (278)
Q Consensus       104 ~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~  181 (278)
                      +..|+|+|....+.|         ++.++|.++|.. .+.+|.+|.|.+. +|+|+|+|+|++.||.-....|.|..+
T Consensus       286 ~~gI~G~V~d~~g~p---------i~~A~V~v~g~~-~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~~~~~~V~v~~~  352 (363)
T cd06245         286 HKGVHGVVTDKAGKP---------ISGATIVLNGGH-RVYTKEGGYFHVL-LAPGQHNINVIAEGYQQEHLPVVVSHD  352 (363)
T ss_pred             CcEEEEEEEcCCCCC---------ccceEEEEeCCC-ceEeCCCcEEEEe-cCCceEEEEEEEeCceeEEEEEEEcCC
Confidence            468999998765544         678999999976 7889999999997 999999999999999999999998764

4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a

>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs)

Probab=98.13  E-value=1.1e-05  Score=78.96  Aligned_cols=67  Identities=25%  Similarity=0.301  Sum_probs=59.0

Q ss_pred             eEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcC
Q 023727          105 FSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSAR  181 (278)
Q Consensus       105 ~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~  181 (278)
                      ..|+|+|....+.|         ++.++|.+.|..+.+.+|.+|.|. .++|+|+|+|+|++.||.....+|+|..+
T Consensus       318 ~~i~G~V~D~~g~p---------i~~A~V~v~g~~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~~~~~~v~v~~~  384 (395)
T cd03867         318 RGIKGFVKDKDGNP---------IKGARISVRGIRHDITTAEDGDYW-RLLPPGIHIVSAQAPGYTKVMKRVTLPAR  384 (395)
T ss_pred             ceeEEEEEcCCCCc---------cCCeEEEEeccccceEECCCceEE-EecCCCcEEEEEEecCeeeEEEEEEeCCc
Confidence            46999999876554         678999999999999999999996 78999999999999999999989998653

The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.

>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs)

Probab=98.12  E-value=1.3e-05  Score=77.25  Aligned_cols=65  Identities=23%  Similarity=0.206  Sum_probs=57.2

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEc
Q 023727          106 SISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSA  180 (278)
Q Consensus       106 tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~  180 (278)
                      +|+|+|....+.|         ++.++|++.|..+.+.+|.+|.|.+. +|+|+|+|+|++.||......|.|..
T Consensus       299 ~i~G~V~d~~g~p---------l~~A~V~i~~~~~~~~Td~~G~f~~~-l~~G~y~l~vs~~Gy~~~~~~v~v~~  363 (374)
T cd03858         299 GIKGFVRDANGNP---------IANATISVEGINHDVTTAEDGDYWRL-LLPGTYNVTASAPGYEPQTKSVVVPN  363 (374)
T ss_pred             ceEEEEECCCCCc---------cCCeEEEEecceeeeEECCCceEEEe-cCCEeEEEEEEEcCcceEEEEEEEec
Confidence            8999999875543         57899999999999999999999985 89999999999999988888888865

The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr

>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3

Probab=98.08  E-value=1.6e-05  Score=78.30  Aligned_cols=65  Identities=22%  Similarity=0.225  Sum_probs=57.5

Q ss_pred             EEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcC
Q 023727          107 ISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSAR  181 (278)
Q Consensus       107 IsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~  181 (278)
                      |+|+|....+.|         ++.++|.+.|..+.+.++.+|.|.+ +++||+|+|+|++.||......|.|...
T Consensus       328 I~G~V~D~~g~p---------I~~AtV~V~g~~~~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~~~~~~V~V~~~  392 (402)
T cd03865         328 VKGFVKDLQGNP---------IANATISVEGIDHDITSAKDGDYWR-LLAPGNYKLTASAPGYLAVVKKVAVPYS  392 (402)
T ss_pred             eEEEEECCCCCc---------CCCeEEEEEcCccccEECCCeeEEE-CCCCEEEEEEEEecCcccEEEEEEEcCC
Confidence            999998765543         5789999999888899999999998 9999999999999999999888888753

4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe

>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3

Probab=97.87  E-value=4.1e-05  Score=74.03  Aligned_cols=66  Identities=21%  Similarity=0.193  Sum_probs=55.8

Q ss_pred             eEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEE-EEEc
Q 023727          105 FSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRV-DVSA  180 (278)
Q Consensus       105 ~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RV-dV~~  180 (278)
                      ..|+|+|....+.|         ++.++|+|.+..+.+.+|.+|.|. .+||+|+|+|+|++.||......+ .|..
T Consensus       296 ~~i~G~V~d~~g~p---------v~~A~V~v~~~~~~~~td~~G~y~-~~l~~G~Y~l~vs~~Gf~~~~~~~v~v~~  362 (372)
T cd03868         296 IGVKGFVRDASGNP---------IEDATIMVAGIDHNVTTAKFGDYW-RLLLPGTYTITAVAPGYEPSTVTDVVVKE  362 (372)
T ss_pred             CceEEEEEcCCCCc---------CCCcEEEEEecccceEeCCCceEE-ecCCCEEEEEEEEecCCCceEEeeEEEcC
Confidence            56999998875544         678999999988899999999998 589999999999999999887764 4543

4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p

>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs)

Probab=97.80  E-value=0.00011  Score=71.46  Aligned_cols=68  Identities=19%  Similarity=0.205  Sum_probs=55.7

Q ss_pred             ceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCcee--EEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcC
Q 023727          104 GFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEH--VTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSAR  181 (278)
Q Consensus       104 ~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~--~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~  181 (278)
                      +..|+|+|....+.|         ++.++|.+.|...  .+.+|.+|.|.+ .++||+|+|.|++.||......|.|...
T Consensus       294 ~~gI~G~V~D~~g~p---------i~~A~V~v~g~~~~~~~~T~~~G~y~~-~l~pG~Y~v~vsa~Gy~~~~~~v~v~~~  363 (376)
T cd03866         294 HLGVKGQVFDSNGNP---------IPNAIVEVKGRKHICPYRTNVNGEYFL-LLLPGKYMINVTAPGFKTVITNVIIPYN  363 (376)
T ss_pred             cCceEEEEECCCCCc---------cCCeEEEEEcCCceeEEEECCCceEEE-ecCCeeEEEEEEeCCcceEEEEEEeCCC
Confidence            356999998665543         5778999988754  458999999966 5999999999999999988888888754

The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont

>PRK15036 hydroxyisourate hydrolase; Provisional

Probab=96.92  E-value=0.0091  Score=50.94  Aligned_cols=59  Identities=20%  Similarity=0.224  Sum_probs=45.2

Q ss_pred             eEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCce-------eEEEecCCccEEE---cc-CCCeeEEEEEEecCcce
Q 023727          105 FSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGE-------HVTFLRPDGYFSF---QN-MSAGTHLIEVAAIGYFF  171 (278)
Q Consensus       105 ~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~-------~~a~~~~dG~F~f---~n-VP~GsY~LeVss~gy~F  171 (278)
                      ..|+|+|...... +    |   +++++|.|....       ..+.+|.||.|.+   .+ +++|.|.|....-+|.-
T Consensus        27 ~~Is~HVLDt~~G-~----P---A~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Yf~   96 (137)
T PRK15036         27 NILSVHILNQQTG-K----P---AADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFK   96 (137)
T ss_pred             CCeEEEEEeCCCC-c----C---CCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchhhh
Confidence            3699999866442 1    2   678888886422       5699999999987   34 78999999999999864

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=96.71  E-value=0.0096  Score=43.42  Aligned_cols=51  Identities=18%  Similarity=0.324  Sum_probs=37.1

Q ss_pred             eeEEEEEcC---cee---EEEecCCccEEEccCCCeeEEEEEEe--cCcceeeEEEEEE
Q 023727          129 SNVKVVLNG---GEH---VTFLRPDGYFSFQNMSAGTHLIEVAA--IGYFFSPVRVDVS  179 (278)
Q Consensus       129 s~t~V~L~g---~~~---~a~~~~dG~F~f~nVP~GsY~LeVss--~gy~F~p~RVdV~  179 (278)
                      +.+++.|..   ...   ...+|.+|.|.|.++++|.|.|+-..  .||...+-...+.
T Consensus         2 ~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~~~~~~~~   60 (70)
T PF05738_consen    2 AGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLDDTPYEFT   60 (70)
T ss_dssp             STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEEECEEEEE
T ss_pred             CCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCCCEECCCceEEE
Confidence            346666642   222   26799999999999999999998876  6887776554443

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.0048  Score=65.85  Aligned_cols=70  Identities=31%  Similarity=0.459  Sum_probs=58.1

Q ss_pred             CceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEcc-CCCeeEEEEEEecCcceeeEEEEEEcC
Q 023727          103 DGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQN-MSAGTHLIEVAAIGYFFSPVRVDVSAR  181 (278)
Q Consensus       103 ~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~n-VP~GsY~LeVss~gy~F~p~RVdV~~~  181 (278)
                      .+++|.|||......     +|   ++.+.|++||. ..+-+|.+|+|++.| +..|+|++++....|.|.++.+.|...
T Consensus       314 tgfSvtGRVl~g~~g-----~~---l~gvvvlvngk-~~~kTdaqGyykLen~~t~gtytI~a~kehlqFstv~~kv~pn  384 (1165)
T KOG1948|consen  314 TGFSVTGRVLVGSKG-----LP---LSGVVVLVNGK-SGGKTDAQGYYKLENLKTDGTYTITAKKEHLQFSTVHAKVKPN  384 (1165)
T ss_pred             EEEEeeeeEEeCCCC-----CC---ccceEEEEcCc-ccceEcccceEEeeeeeccCcEEEEEeccceeeeeEEEEecCC
Confidence            458999999865332     12   67788888875 457799999999999 899999999999999999999998764

>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins

Probab=96.58  E-value=0.0082  Score=44.28  Aligned_cols=49  Identities=20%  Similarity=0.275  Sum_probs=40.5

Q ss_pred             eeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcCC
Q 023727          129 SNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARH  182 (278)
Q Consensus       129 s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~~  182 (278)
                      +.++|.|||...+     ..-..+.++++|.|.|++...||.-....|+|.+..
T Consensus        11 ~gA~V~vdg~~~G-----~tp~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~   59 (71)
T PF08308_consen   11 SGAEVYVDGKYIG-----TTPLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGE   59 (71)
T ss_pred             CCCEEEECCEEec-----cCcceeeecCCccEEEEEEECCCeeEEEEEEECCCC
Confidence            5689999996555     234578889999999999999999999999998643

It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.

>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein

Probab=96.32  E-value=0.034  Score=47.56  Aligned_cols=58  Identities=17%  Similarity=0.180  Sum_probs=46.2

Q ss_pred             ceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcC----------ceeEEEecCCccEEEccCCCeeEEEEEEecCcce
Q 023727          104 GFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNG----------GEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFF  171 (278)
Q Consensus       104 ~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g----------~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F  171 (278)
                      ..+|+|.++.+.++|         .+..++.|.-          ..-+..++.+|.|.| ++.||.|.+.+..-++.+
T Consensus         2 sV~ISGvL~dg~G~p---------v~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~-~~epG~Y~V~l~~~g~~~   69 (134)
T PF08400_consen    2 SVKISGVLKDGAGKP---------VPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSF-DVEPGVYRVTLKVEGRPP   69 (134)
T ss_pred             eEEEEEEEeCCCCCc---------CCCCEEEEEEccCchheEEEEEEEEEcCCCceEEE-EecCCeEEEEEEECCCCc
Confidence            478999999888876         4667777652          233578899999999 799999999999888843

The characteristics of the protein distribution suggest prophage matches.

>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs)

Probab=95.40  E-value=0.047  Score=54.17  Aligned_cols=66  Identities=21%  Similarity=0.207  Sum_probs=53.6

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcC
Q 023727          106 SISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSAR  181 (278)
Q Consensus       106 tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~  181 (278)
                      -|+|.|....++|         +++++|.++|-.+...+.++|.|- +=+.||+|.+.+++.||.-....|.|...
T Consensus       330 GikG~V~d~~g~~---------i~~a~i~v~g~~~~v~t~~~Gdyw-Rll~pG~y~v~~~a~gy~~~~~~~~v~~~  395 (405)
T cd03869         330 GIKGVVRDKTGKG---------IPNAIISVEGINHDIRTASDGDYW-RLLNPGEYRVTAHAEGYTSSTKNCEVGYE  395 (405)
T ss_pred             CceEEEECCCCCc---------CCCcEEEEecCccceeeCCCCceE-EecCCceEEEEEEecCCCcccEEEEEcCC
Confidence            4899998775544         567889999977777778888874 45899999999999999988888888743

The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro

>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]

Probab=94.30  E-value=0.18  Score=51.21  Aligned_cols=66  Identities=21%  Similarity=0.204  Sum_probs=56.4

Q ss_pred             eEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEc
Q 023727          105 FSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSA  180 (278)
Q Consensus       105 ~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~  180 (278)
                      --|+|-|....+++         +++++|.++|..+...+..+|.|= +=++||.|.|.++..||.-....|.|..
T Consensus       378 ~GIkG~V~D~~G~~---------I~NA~IsV~ginHdv~T~~~GDYW-RLL~PG~y~vta~A~Gy~~~tk~v~V~~  443 (500)
T KOG2649|consen  378 RGIKGLVFDDTGNP---------IANATISVDGINHDVTTAKEGDYW-RLLPPGKYIITASAEGYDPVTKTVTVPP  443 (500)
T ss_pred             hccceeEEcCCCCc---------cCceEEEEecCcCceeecCCCceE-EeeCCcceEEEEecCCCcceeeEEEeCC
Confidence            35889998755543         689999999999888889999874 3589999999999999999999999976

>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]

Probab=94.21  E-value=0.087  Score=56.71  Aligned_cols=62  Identities=23%  Similarity=0.298  Sum_probs=50.2

Q ss_pred             CceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCc---eeEEEecCCccEEEccCCCeeEEEEEEecCcceee
Q 023727          103 DGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGG---EHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSP  173 (278)
Q Consensus       103 ~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~---~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p  173 (278)
                      .+++|+|+|.-..+.    +     .+.+.|.|...   -..+.++.+|.|.|.|+.||.|.+..+++...+..
T Consensus       117 tGFsv~GkVlgaagg----G-----pagV~velrs~e~~iast~T~~~Gky~f~~iiPG~Yev~ashp~w~~~~  181 (1165)
T KOG1948|consen  117 TGFSVRGKVLGAAGG----G-----PAGVLVELRSQEDPIASTKTEDGGKYEFRNIIPGKYEVSASHPAWECIS  181 (1165)
T ss_pred             eeeeEeeEEeeccCC----C-----cccceeecccccCcceeeEecCCCeEEEEecCCCceEEeccCcceeEee
Confidence            357999999876541    1     25677777654   35799999999999999999999999999999876

>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates

Probab=93.87  E-value=0.19  Score=42.77  Aligned_cols=54  Identities=17%  Similarity=0.237  Sum_probs=40.1

Q ss_pred             CCCCceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcC--------------------ceeEEEecCCccEEEccCCCee
Q 023727          100 GSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNG--------------------GEHVTFLRPDGYFSFQNMSAGT  159 (278)
Q Consensus       100 ~~~~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g--------------------~~~~a~~~~dG~F~f~nVP~Gs  159 (278)
                      ..+...+|.|+|...++.|         ++.+.|.+=.                    +.-...+|++|.|.|..|+||.
T Consensus         7 ~~G~~l~l~G~V~D~~g~p---------v~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~   77 (146)
T cd00421           7 APGEPLTLTGTVLDGDGCP---------VPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGP   77 (146)
T ss_pred             CCCCEEEEEEEEECCCCCC---------CCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCC
Confidence            3467789999999887765         3445555521                    1225789999999999999999


Q ss_pred             EEE
Q 023727          160 HLI  162 (278)
Q Consensus       160 Y~L  162 (278)
                      |.+
T Consensus        78 Y~~   80 (146)
T cd00421          78 YPI   80 (146)
T ss_pred             CCC
Confidence            984

This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=93.86  E-value=0.13  Score=36.92  Aligned_cols=39  Identities=23%  Similarity=0.291  Sum_probs=28.4

Q ss_pred             EEEEEcC-ceeEEEecCCc-cEEEccCCCeeEEEEEEecCc
Q 023727          131 VKVVLNG-GEHVTFLRPDG-YFSFQNMSAGTHLIEVAAIGY  169 (278)
Q Consensus       131 t~V~L~g-~~~~a~~~~dG-~F~f~nVP~GsY~LeVss~gy  169 (278)
                      -+-.|.| ...|..+.... .+.|.++|||+|+|+|.+.+-
T Consensus        10 Y~Y~l~g~d~~W~~~~~~~~~~~~~~L~~G~Y~l~V~a~~~   50 (66)
T PF07495_consen   10 YRYRLEGFDDEWITLGSYSNSISYTNLPPGKYTLEVRAKDN   50 (66)
T ss_dssp             EEEEEETTESSEEEESSTS-EEEEES--SEEEEEEEEEEET
T ss_pred             EEEEEECCCCeEEECCCCcEEEEEEeCCCEEEEEEEEEECC
Confidence            3455665 34577777777 999999999999999998763

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length

Probab=93.16  E-value=0.45  Score=37.83  Aligned_cols=56  Identities=23%  Similarity=0.265  Sum_probs=42.4

Q ss_pred             CceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcC--cee--EEEecCCccEEEccCCCeeEEEEEEecCc
Q 023727          103 DGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNG--GEH--VTFLRPDGYFSFQNMSAGTHLIEVAAIGY  169 (278)
Q Consensus       103 ~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g--~~~--~a~~~~dG~F~f~nVP~GsY~LeVss~gy  169 (278)
                      ....|+|+|. .++.|         +..+.|.|.+  +++  ...+.+.|.|.|. ..||+++|.+.++.=
T Consensus         6 ke~VItG~V~-~~G~P---------v~gAyVRLLD~sgEFtaEvvts~~G~FRFf-aapG~WtvRal~~~g   65 (85)
T PF07210_consen    6 KETVITGRVT-RDGEP---------VGGAYVRLLDSSGEFTAEVVTSATGDFRFF-AAPGSWTVRALSRGG   65 (85)
T ss_pred             ceEEEEEEEe-cCCcC---------CCCeEEEEEcCCCCeEEEEEecCCccEEEE-eCCCceEEEEEccCC
Confidence            3468999999 66655         4566766643  455  4788999999996 689999999888764

Members of this family appear to be Actinomycete specific. The function of this family is unknown.

>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins

Probab=89.38  E-value=1.8  Score=35.17  Aligned_cols=55  Identities=20%  Similarity=0.201  Sum_probs=36.4

Q ss_pred             eeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcc---eeeEEEEEEcCCCCceEE
Q 023727          129 SNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYF---FSPVRVDVSARHPGKVQA  188 (278)
Q Consensus       129 s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~---F~p~RVdV~~~~~G~VrA  188 (278)
                      ..-.|.+||.....  ..+|.|...+||||.|.+.....-..   -..+.|++.+   |++.-
T Consensus        41 ~~~~v~vdg~~ig~--l~~g~y~~~~v~pG~h~i~~~~~~~~~~~~~~l~~~~~~---G~~yy   98 (117)
T PF11008_consen   41 VKPDVYVDGELIGE--LKNGGYFYVEVPPGKHTISAKSEFSSSPGANSLDVTVEA---GKTYY   98 (117)
T ss_pred             ccceEEECCEEEEE--eCCCeEEEEEECCCcEEEEEecCccCCCCccEEEEEEcC---CCEEE
Confidence            44567778765544  67889999999999999999554332   1345555543   56543

However this cannot be confirmed.

>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=85.64  E-value=1.8  Score=40.09  Aligned_cols=57  Identities=19%  Similarity=0.253  Sum_probs=40.7

Q ss_pred             CCCCceEEEEEEECCCCCCCCCCCCCCCceeEEEEEc----C------------------ceeEEEecCCccEEEccCCC
Q 023727          100 GSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLN----G------------------GEHVTFLRPDGYFSFQNMSA  157 (278)
Q Consensus       100 ~~~~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~----g------------------~~~~a~~~~dG~F~f~nVP~  157 (278)
                      +.++...|+|||...++.|         +..+.|-+=    +                  +.-.+.+|++|.|.|.-+.|
T Consensus        68 ~~Ge~i~l~G~VlD~~G~P---------v~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~P  138 (226)
T COG3485          68 ARGERILLEGRVLDGNGRP---------VPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKP  138 (226)
T ss_pred             CCCceEEEEEEEECCCCCC---------CCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeec
Confidence            4457899999999888776         344555440    1                  12247899999999999999


Q ss_pred             eeEEEEEE
Q 023727          158 GTHLIEVA  165 (278)
Q Consensus       158 GsY~LeVs  165 (278)
                      |.|-..-.
T Consensus       139 g~yp~~~~  146 (226)
T COG3485         139 GPYPWRNG  146 (226)
T ss_pred             ccccCCCC
Confidence            98854433

>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes

Probab=83.05  E-value=5  Score=36.82  Aligned_cols=75  Identities=15%  Similarity=0.170  Sum_probs=46.6

Q ss_pred             CCCceEEEEEEECC-CCCCCCCCCCCCCceeEEEEEcC------ceeEEEecCCccEEEccCCCeeEEEEE-EecC---c
Q 023727          101 SGDGFSISGRVKLP-GMSLKAFGSPGGKASNVKVVLNG------GEHVTFLRPDGYFSFQNMSAGTHLIEV-AAIG---Y  169 (278)
Q Consensus       101 ~~~~~tIsGrV~~p-~~~p~~~~lp~~~~s~t~V~L~g------~~~~a~~~~dG~F~f~nVP~GsY~LeV-ss~g---y  169 (278)
                      .+...+++|+|... .+++  +...   .-.+++.|-.      +.....+..||+|.=..+=+|.|.|.+ .-.+   +
T Consensus        18 D~P~s~l~G~iiD~~tgE~--i~~~---~~gv~i~l~e~gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~   92 (222)
T PF12866_consen   18 DEPDSTLTGRIIDVYTGEP--IQTD---IGGVRIQLYELGYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVV   92 (222)
T ss_dssp             ----EEEEEEEEECCTTEE---------STSSEEEEECS-CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSC
T ss_pred             cCCCceEEEEEEEeecCCe--eeec---CCceEEEEEecccccCCCcceEEccCCceeeeeEeccceEEEEcCCCCcccC
Confidence            34668999999543 2333  2222   1367787753      345678999999955566789999999 7788   7


Q ss_pred             ceeeEEEEEEc
Q 023727          170 FFSPVRVDVSA  180 (278)
Q Consensus       170 ~F~p~RVdV~~  180 (278)
                      ...+.+|+|.+
T Consensus        93 ~~dti~v~i~G  103 (222)
T PF12866_consen   93 PVDTIEVDIKG  103 (222)
T ss_dssp             CE--EEEEESS
T ss_pred             CCccEEEEecC
Confidence            88889999974

These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.

>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function

Probab=82.92  E-value=6.7  Score=33.35  Aligned_cols=28  Identities=14%  Similarity=0.241  Sum_probs=23.7

Q ss_pred             ceeEEEecCCccEEEccCCCeeEEEEEE
Q 023727          138 GEHVTFLRPDGYFSFQNMSAGTHLIEVA  165 (278)
Q Consensus       138 ~~~~a~~~~dG~F~f~nVP~GsY~LeVs  165 (278)
                      |...+-+|++|.+..+++..|.|.+...
T Consensus        78 g~~IGKTD~~Gki~Wk~~~kG~Y~v~l~  105 (131)
T PF10794_consen   78 GISIGKTDEEGKIIWKNGRKGKYIVFLP  105 (131)
T ss_pred             ceeecccCCCCcEEEecCCcceEEEEEc
Confidence            4556889999999999999999987544

>PF10670 DUF4198: Domain of unknown function (DUF4198)

Probab=82.70  E-value=5.6  Score=34.34  Aligned_cols=55  Identities=20%  Similarity=0.213  Sum_probs=38.7

Q ss_pred             ceEEEEEEECCCCCCCCCCCCCCCceeEEEEEc--Cc-------eeEEEecCCccEEEccCCCeeEEEEEEecC
Q 023727          104 GFSISGRVKLPGMSLKAFGSPGGKASNVKVVLN--GG-------EHVTFLRPDGYFSFQNMSAGTHLIEVAAIG  168 (278)
Q Consensus       104 ~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~--g~-------~~~a~~~~dG~F~f~nVP~GsY~LeVss~g  168 (278)
                      +-.++.+|...+ +|         ++++.|.+.  +.       .....+|.+|.|+|.=-.+|.|+|.+.+.+
T Consensus       150 g~~~~~~vl~~G-kP---------l~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~~~  213 (215)
T PF10670_consen  150 GDPLPFQVLFDG-KP---------LAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRASHKD  213 (215)
T ss_pred             CCEEEEEEEECC-eE---------cccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEEEEec
Confidence            345677776443 33         344555553  21       567999999999998778999999998754

>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate

Probab=81.69  E-value=4  Score=35.51  Aligned_cols=53  Identities=19%  Similarity=0.260  Sum_probs=37.4

Q ss_pred             CCCCceEEEEEEECCCCCCCCCCCCCCCceeEEEEEc-----C---------------c---eeEEEecCCccEEEccCC
Q 023727          100 GSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLN-----G---------------G---EHVTFLRPDGYFSFQNMS  156 (278)
Q Consensus       100 ~~~~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~-----g---------------~---~~~a~~~~dG~F~f~nVP  156 (278)
                      .......|+|+|...+..|         ++.+.|-+=     |               +   .-...+|.+|.|.|.-|.
T Consensus        11 ~~G~~l~l~g~V~D~~g~P---------v~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~   81 (158)
T cd03459          11 AIGERIILEGRVLDGDGRP---------VPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIK   81 (158)
T ss_pred             CCCcEEEEEEEEECCCCCC---------CCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEEC
Confidence            3456799999999766655         344444441     0               0   113679999999999999


Q ss_pred             CeeEE
Q 023727          157 AGTHL  161 (278)
Q Consensus       157 ~GsY~  161 (278)
                      ||.|-
T Consensus        82 Pg~Y~   86 (158)
T cd03459          82 PGAYP   86 (158)
T ss_pred             CCCcC
Confidence            99986

3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
1uwy_A	426	Carboxypeptidase M; metallopeptidase, GPI-anchor,	98.41
3mn8_A	435	LP15968P; catalytic domain of alpha/beta-hydrolase	98.31
2nsm_A	439	Carboxypeptidase N catalytic chain; caroxypeptidas	98.29
1h8l_A	380	Carboxypeptidase GP180 residues 503-882; hydrolase	98.23
1nkg_A	508	Rhamnogalacturonase B; polysaccharide lyase, carbo	98.22
3kcp_A	321	Cellulosomal-scaffolding protein A; dockerin, X-mo	97.32
3qec_A	150	Putative carbohydrate binding protein; suramin bin	94.93
3irp_X	429	URO-adherence factor A; DEV-IGG fold, cell WALL, h	94.93
1xpn_A	170	Hypothetical protein PA1324; B-barrel, structural	94.76
2xsu_A	312	Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE	88.22
2boy_A	254	3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi	88.18
2azq_A	311	Catechol 1,2-dioxygenase; CTD, lipid, isozyme, int	87.02
2pz4_A	239	Protein GBS052; SPAB, GRAM-positive pilins, adhesi	86.38
2x5p_A	121	FBA2, fibronectin binding protein; protein binding	85.59
1ti6_B	274	Pyrogallol hydroxytransferase small subunit; molyb	84.75
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	84.59
3pe9_A	98	Fibronectin(III)-like module; CBHA, beta-sandwich,	83.12
2bum_B	241	Protocatechuate 3,4-dioxygenase beta chain; oxidor	81.51

>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1

Probab=98.41  E-value=2.9e-07  Score=88.58  Aligned_cols=91  Identities=16%  Similarity=0.084  Sum_probs=62.8

Q ss_pred             ceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeE--EEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcC
Q 023727          104 GFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHV--TFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSAR  181 (278)
Q Consensus       104 ~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~--a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~  181 (278)
                      +.+|+|+|...++.|         ++.++|.+.|....  +.+|.||.|.+ ++++|+|+|.|++.||......|.|...
T Consensus       295 ~~~I~G~V~D~~g~p---------i~gA~V~v~g~~~~~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~~~~~~v~v~~~  364 (426)
T 1uwy_A          295 HLGVKGQVFDQNGNP---------LPNVIVEVQDRKHICPYRTNKYGEYYL-LLLPGSYIINVTVPGHDPHITKVIIPEK  364 (426)
T ss_dssp             GCSEEEEEECTTSCB---------CCSCEEEETTCCCSSCCBCCTTCEEEE-CCCSEEEEEEEECSSSCCEEEEEEECSS
T ss_pred             cceeEEEEECCCCCc---------cCceEEEEEeccccceeEeCCCCEEEe-ccCCeeEEEEEEEcCcccEEEEEEEeCC
Confidence            356999998765544         67899999998877  99999999998 6999999999999999888877888653


Q ss_pred             C----CCceEEEEecccCccccEEEEe
Q 023727          182 H----PGKVQAALTETRRGLNELVLEQ  204 (278)
Q Consensus       182 ~----~G~VrA~~~e~~~~l~PLvv~p  204 (278)
                      .    ...+...+.+....+.++++++
T Consensus       365 ~~~~~~~~~~~~L~~~~~~l~evv~~~  391 (426)
T 1uwy_A          365 SQNFSALKKDILLPFQGQLDSIPVSNP  391 (426)
T ss_dssp             CSSSSCEECCEECSSCC---------C
T ss_pred             CccccceEEEEEEecCCccccceeecc
Confidence            2    1123334444444556777765

>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}

Probab=98.31  E-value=1e-06  Score=85.18  Aligned_cols=91  Identities=16%  Similarity=0.181  Sum_probs=61.6

Q ss_pred             eEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCc-eeEEEecCCccEEEccCCCeeEEEEEEecCc-ceeeEEEEEEcCC
Q 023727          105 FSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGG-EHVTFLRPDGYFSFQNMSAGTHLIEVAAIGY-FFSPVRVDVSARH  182 (278)
Q Consensus       105 ~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~-~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy-~F~p~RVdV~~~~  182 (278)
                      ..|+|+|+..++.|         ++.++|.+.|. ...+.+|.+|.|.+ .+++|+|+|.|++.|| ......|.|....
T Consensus       337 ~gv~G~V~D~~G~p---------i~gA~V~v~g~~~~~~~Td~~G~y~~-~l~pG~Y~l~vs~~Gy~~~~~~~v~v~~~~  406 (435)
T 3mn8_A          337 IGIKGLVTDASGFP---------IADANVYVAGLEEKPMRTSKRGEYWR-LLTPGLYSVHASAFGYQTSAPQQVRVTNDN  406 (435)
T ss_dssp             SSEEEEEECSSSCB---------CTTCEEEETTCTTSCEECCTTCEEEE-CCCSEEEEEEEEBTTBCCCCCEEEEECCCS
T ss_pred             ceeEEEEECCCCCc---------cCceEEEEecccccceEeCCCCeEEE-ecCCCcEEEEEEEcccccceEEEEEEecCC
Confidence            35999998775554         67899999994 88899999999977 5999999999999999 7778888887542


Q ss_pred             CC--ceEEEEecccCccccEEEEec
Q 023727          183 PG--KVQAALTETRRGLNELVLEQL  205 (278)
Q Consensus       183 ~G--~VrA~~~e~~~~l~PLvv~p~  205 (278)
                      ..  .+...+.+....+.++.++|.
T Consensus       407 ~~~~~~~~~L~~~~~~L~~v~~~~~  431 (435)
T 3mn8_A          407 QEALRLDFKLAPVETNFDGISSFYS  431 (435)
T ss_dssp             SSCEECCEECCBC------------
T ss_pred             cceeEEEEEEeecCCCCCeeEeccC
Confidence            11  244444444445566666553

>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens}

Probab=98.29  E-value=1.3e-06  Score=84.18  Aligned_cols=93  Identities=19%  Similarity=0.130  Sum_probs=59.9

Q ss_pred             ceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEE-EcCC
Q 023727          104 GFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDV-SARH  182 (278)
Q Consensus       104 ~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV-~~~~  182 (278)
                      ...|+|+|...++.|         ++.++|.+.|....+.+|.+|.|.+ ++|+|+|+|.|++.||......|.| ....
T Consensus       320 ~~~i~G~V~D~~g~p---------i~gA~V~v~~~~~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~~~~~~v~v~~~~~  389 (439)
T 2nsm_A          320 HQGIKGMVLDQNYNN---------LANAVISVSGINHDVTSGDHGDYFR-LLLPGIYTVSATAPGYDPETVTVTVGPAEP  389 (439)
T ss_dssp             SCSEEEEEECTTSCB---------CTTCEEEETTEEEEEECCTTSEEEE-CCCSEEEEEEEECTTEECEEEEEEECSSSC
T ss_pred             ccceEEEEEcCCCCC---------ccceEEEEEcccceeEECCCCeEEE-ccCCeeEEEEEEecCceeEEEEEEEecCCc
Confidence            357999998765544         6789999999888999999999987 6999999999999999888888888 3221


Q ss_pred             CCceEEEEecccCccccEEEEeccc
Q 023727          183 PGKVQAALTETRRGLNELVLEQLRE  207 (278)
Q Consensus       183 ~G~VrA~~~e~~~~l~PLvv~p~~~  207 (278)
                       ......+......+.++++.+...
T Consensus       390 -~~~~~~L~~~~~~L~eVvV~~~~~  413 (439)
T 2nsm_A          390 -TLVNFHLKRSIPQVSPVRRAPSRR  413 (439)
T ss_dssp             -EECCEECEEC--------------
T ss_pred             -ceEeEEEccCCCccccEEEecCCC
Confidence             111122222333456777766444

>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*

Probab=98.23  E-value=3e-06  Score=79.96  Aligned_cols=67  Identities=21%  Similarity=0.092  Sum_probs=57.8

Q ss_pred             ceEEEEEEECC-CCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEc
Q 023727          104 GFSISGRVKLP-GMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSA  180 (278)
Q Consensus       104 ~~tIsGrV~~p-~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~  180 (278)
                      ..+|+|+|..+ .+.|         ++.++|.+.+....+.+|.+|.|.+ ++++|+|+|.|++.||......|.|..
T Consensus       300 ~~~i~G~V~D~~~g~p---------i~~A~V~v~~~~~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~~~~~~v~v~~  367 (380)
T 1h8l_A          300 HRGIWGFVLDATDGRG---------ILNATISVADINHPVTTYKDGDYWR-LLVQGTYKVTASARGYDPVTKTVEVDS  367 (380)
T ss_dssp             GCEEEEEEEETTTCSB---------CTTCEEEETTEEEEEECCTTSEEEE-CCCSEEEEEEEECTTBCCEEEEEEECS
T ss_pred             cccceEEEEeCCCCCc---------cCceEEEEecCcceeEECCCEEEEE-ecCCCcEEEEEEEcCccceEEEEEEcC
Confidence            36899999876 4443         5789999999888999999999988 699999999999999998887787764

>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A

Probab=98.22  E-value=2.7e-06  Score=84.40  Aligned_cols=69  Identities=22%  Similarity=0.169  Sum_probs=57.3

Q ss_pred             CCCceEEEEEEECCCCCCCCCCCCCCCceeEEEEE---cCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEE
Q 023727          101 SGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVL---NGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVD  177 (278)
Q Consensus       101 ~~~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L---~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVd  177 (278)
                      +.++.+|+|+|.   +.+         .....|++   ++.+|||.+|++|+|+|.||+||+|.|.+...++.+....|.
T Consensus       254 ~~~RGtVsG~V~---G~~---------~~~~avv~~~~k~~qywt~td~~G~FtI~~V~pGtY~L~a~~~G~~~~~~~Vt  321 (508)
T 1nkg_A          254 ASGRGKVAGTAS---GAD---------SSMDWVVHWYNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVATSSVT  321 (508)
T ss_dssp             GGGCBEEEEEEE---SSC---------TTSCEEEEEECSSCEEEEECCTTCEEECCCBCSEEEEEEEEETTEEEEEEEEE
T ss_pred             cccccEEEEEEc---Ccc---------CCceEEEEEcCCCceeEEEECCCCcEEeCCcCCceEEEEEEECceEEEEeEEE
Confidence            457799999998   322         12244555   578999999999999999999999999999999999999999


Q ss_pred             EEcC
Q 023727          178 VSAR  181 (278)
Q Consensus       178 V~~~  181 (278)
                      |.+.
T Consensus       322 V~aG  325 (508)
T 1nkg_A          322 VSAG  325 (508)
T ss_dssp             ECTT
T ss_pred             EcCC
Confidence            9864

>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B

Probab=97.32  E-value=0.00077  Score=63.45  Aligned_cols=74  Identities=19%  Similarity=0.257  Sum_probs=57.1

Q ss_pred             CCCCceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCee--EEEEEEecCcceeeEE
Q 023727          100 GSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGT--HLIEVAAIGYFFSPVR  175 (278)
Q Consensus       100 ~~~~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~Gs--Y~LeVss~gy~F~p~R  175 (278)
                      ...++++|+|-|...-.. ++-..+ ..-+..+|.+.|+...+.+|++|+|+|.+||+|.  |+|+++-++|....+.
T Consensus       153 ~~~~~~~vsGYi~~~~~~-~~~~~~-~~~~G~~V~i~gt~~sa~tD~~G~f~I~~vp~~~~~ytl~i~~~g~l~~~i~  228 (321)
T 3kcp_A          153 PVIEGYKVSGYILPDFSF-DATVAP-LVKAGFKVEIVGTELYAVTDANGYFEITGVPANASGYTLKISRATYLDRVIA  228 (321)
T ss_dssp             CCCSSEEEEEEEEESSCC-CTTTHH-HHHSCCEEEETTSSCEEECCTTSEEEEEEECCEEEEEEEEEECTEECCEEEE
T ss_pred             CCCCCceEEEEEcccccc-ccccch-hccCCcEEEEEeccceeEECCCceEEEeccCCCCccEEEEEeecCceeeeee
Confidence            345789999999753111 000000 1135689999999999999999999999999998  9999999999988776

>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa}

Probab=94.93  E-value=0.018  Score=48.80  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=23.1

Q ss_pred             eEEEecCCccEEEccCCCeeEEEEEE
Q 023727          140 HVTFLRPDGYFSFQNMSAGTHLIEVA  165 (278)
Q Consensus       140 ~~a~~~~dG~F~f~nVP~GsY~LeVs  165 (278)
                      ..+..|.+|.|+|.|||+|.|.|...
T Consensus        89 r~t~cD~~G~F~F~~Lp~G~Yyl~a~  114 (150)
T 3qec_A           89 REATTDQNGRFDFDHIPNGTYYISSE  114 (150)
T ss_dssp             EEEECCTTSEEEEEEECSEEEEEEEE
T ss_pred             eEEEeCCCCcEEECCCCCccEEEEEE
Confidence            36889999999999999999988765

>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X

Probab=94.93  E-value=0.043  Score=53.24  Aligned_cols=73  Identities=21%  Similarity=0.256  Sum_probs=50.5

Q ss_pred             CCceEEEEEEECCCCCCCCCCCCC-CCceeEEEEEcC--ce--eEEEecCCccEEEccCCCeeEEEEEEec-CcceeeEE
Q 023727          102 GDGFSISGRVKLPGMSLKAFGSPG-GKASNVKVVLNG--GE--HVTFLRPDGYFSFQNMSAGTHLIEVAAI-GYFFSPVR  175 (278)
Q Consensus       102 ~~~~tIsGrV~~p~~~p~~~~lp~-~~~s~t~V~L~g--~~--~~a~~~~dG~F~f~nVP~GsY~LeVss~-gy~F~p~R  175 (278)
                      +..+.|.|+|-.. .+..+.-=+. .-++.++|.|.+  |.  ..+.+|.+|.|.|.++++|.|.+++..+ ||.+.+..
T Consensus       303 ~G~~~igg~Vw~D-~n~nG~~D~~e~gl~gv~v~L~d~~G~~v~tttTd~~G~Y~F~~L~~G~Y~V~~~~P~Gy~~t~~~  381 (429)
T 3irp_X          303 AGFGGFGGYVWFD-KNNDGVQNDSNAAAAGITVNLLDPTGIRLATTTTDITGHYNFDNLTNGNYLVEFVMPEGYIPTQAN  381 (429)
T ss_dssp             SCEEEEEEEEEEC-TTSSSSSCCSSCBCTTCEEEEECTTSCEEEEEECCTTSEEEEEEEESEEEEEEECCCTTEEECCSS
T ss_pred             cceEEEccEEEEe-CCCCCCcCcCCCCcCCeEEEEEcCCCCEEEEEEeCCCCeEEeCCCCCCcEEEEEECCCCCEEcCCC
Confidence            4558999999643 2111110001 126778888863  33  4688999999999999999999999877 77776554

>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1

Probab=94.76  E-value=0.027  Score=48.64  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=23.5

Q ss_pred             eEEEecCCccEEEccCCCeeEEEEEE
Q 023727          140 HVTFLRPDGYFSFQNMSAGTHLIEVA  165 (278)
Q Consensus       140 ~~a~~~~dG~F~f~nVP~GsY~LeVs  165 (278)
                      ..+..|.+|.|+|.|||+|.|.|...
T Consensus       109 r~t~~D~~G~F~F~~Lp~G~Yyl~a~  134 (170)
T 1xpn_A          109 REATTDQNGRFDFDHIPNGTYYISSE  134 (170)
T ss_dssp             EEEEECSSCEEEECSCCSEEEEEEEE
T ss_pred             eEEEecCCCcEEecCCCCccEEEEEE
Confidence            46889999999999999999999874

>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*

Probab=88.22  E-value=1.7  Score=40.60  Aligned_cols=50  Identities=16%  Similarity=0.103  Sum_probs=38.0

Q ss_pred             CceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcC----c--------------eeEEEecCCccEEEccCCCeeEE
Q 023727          103 DGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNG----G--------------EHVTFLRPDGYFSFQNMSAGTHL  161 (278)
Q Consensus       103 ~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g----~--------------~~~a~~~~dG~F~f~nVP~GsY~  161 (278)
                      ....|+|+|...+++|         ++++.|-+=.    |              .-...+|.+|.|.|.-|.||.|-
T Consensus       135 ~~l~v~G~V~D~~G~P---------v~gA~VeiWqada~G~Y~~~~~~~~~~~~rGr~~TD~~G~y~F~TI~Pg~Y~  202 (312)
T 2xsu_A          135 DTLIIEGTVTDTEGNI---------IEGAKVEVWHANSLGNYSFFDKSQSDFNLRRTILTDVNGKYVALTTMPVGYG  202 (312)
T ss_dssp             CEEEEEEEEEETTSCB---------CTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEEEECCCCEE
T ss_pred             eeEEEEEEEECCCCCC---------CCCCEEEEEecCCCCcccCCCCCCCCCCCeeEEEeCCCceEEEEEECcCccc
Confidence            4689999999877765         4556666521    1              12577899999999999999997

>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}

Probab=88.18  E-value=0.76  Score=41.74  Aligned_cols=54  Identities=20%  Similarity=0.217  Sum_probs=40.5

Q ss_pred             CCCCceEEEEEEECCCCCCCCCCCCCCCceeEEEEEc----Ccee--------------EEEecCCccEEEccCCCeeEE
Q 023727          100 GSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLN----GGEH--------------VTFLRPDGYFSFQNMSAGTHL  161 (278)
Q Consensus       100 ~~~~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~----g~~~--------------~a~~~~dG~F~f~nVP~GsY~  161 (278)
                      ..++...|+|+|...+++|         ++++.|-+=    .|.|              ...+|++|.|.|.-|.||.|-
T Consensus        98 ~~G~~l~l~G~V~D~~G~P---------v~~A~VeiWqada~G~Y~~~~~~~~~~~~rGr~~Td~~G~y~F~TI~Pg~Y~  168 (254)
T 2boy_A           98 ESGDTLIFRGEVVDQEGAP---------LADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYE  168 (254)
T ss_dssp             CCSCEEEEEEEEECTTSCB---------CCSCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEEEECCCCEE
T ss_pred             CCCCEEEEEEEEECCCCCC---------CCCCEEEEEcCCCCCccCCcCCCCCCCCCeeEEEeCCCceEEEEEECCcccc
Confidence            3456799999999877665         456666662    1222              577899999999999999996


Q ss_pred             E
Q 023727          162 I  162 (278)
Q Consensus       162 L  162 (278)
                      +
T Consensus       169 ~  169 (254)
T 2boy_A          169 I  169 (254)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}

Probab=87.02  E-value=1.9  Score=40.27  Aligned_cols=52  Identities=13%  Similarity=0.070  Sum_probs=38.9

Q ss_pred             CCCceEEEEEEECCCCCCCCCCCCCCCceeEEEEEc----Ccee--------------EEEecCCccEEEccCCCeeEE
Q 023727          101 SGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLN----GGEH--------------VTFLRPDGYFSFQNMSAGTHL  161 (278)
Q Consensus       101 ~~~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~----g~~~--------------~a~~~~dG~F~f~nVP~GsY~  161 (278)
                      .++...|+|+|...+++|         ++++.|-+=    +|.|              ...+|.+|.|.|.-|.||.|.
T Consensus       129 ~G~~l~v~G~V~D~~G~P---------v~gA~VeiWqada~G~Y~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg~Y~  198 (311)
T 2azq_A          129 PGVVMFLQGQVFDANGKP---------LAGATVDLWHANTQGTYSYFDSTQSEFNLRRRIITDAEGRYRARSIVPSGYG  198 (311)
T ss_dssp             CCCEEEEEEEEECSSSCB---------CTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTCEEEEEEECCCCEE
T ss_pred             CCcEEEEEEEEEcCCCCC---------CCCceeEEEecCCCCccCCCCCCCCCCCCeeEEEeCCCceEEEEEEcCCCcC
Confidence            356789999999877765         345555551    1222              577899999999999999997

>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A {Streptococcus pyogenes}

Probab=85.59  E-value=1.9  Score=34.69  Aligned_cols=57  Identities=25%  Similarity=0.357  Sum_probs=38.1

Q ss_pred             ceeEEEEEcC--c-eeEEEecCCccEEEccCCCeeEEE-EEEec-Cccee-eEEEEEEcCCCCceE
Q 023727          128 ASNVKVVLNG--G-EHVTFLRPDGYFSFQNMSAGTHLI-EVAAI-GYFFS-PVRVDVSARHPGKVQ  187 (278)
Q Consensus       128 ~s~t~V~L~g--~-~~~a~~~~dG~F~f~nVP~GsY~L-eVss~-gy~F~-p~RVdV~~~~~G~Vr  187 (278)
                      ++.+.+.|..  + ....++ .||.|.|.++++|+|.| |+..+ ||... ++.+.|..  +|+|.
T Consensus        42 L~GA~F~l~~~~g~~v~~~~-sdG~~~~~~L~~G~Y~l~EtkAP~GY~l~~~i~ftV~~--~g~v~  104 (121)
T 2x5p_A           42 LAGATMELRDSSGKTISTWI-SDGQVKDFYLMPGKYTFVETAAPDGYEVATAITFTVNE--QGQVT  104 (121)
T ss_dssp             CCCCEEEEECTTSCEEEEEE-CCSSCEEEEECSEEEEEEEEECCTTCCCCCCEEEEECT--TCCEE
T ss_pred             cCCCEEEEEECCCCEEEEEE-eCCEEEEcccCCcEEEEEEEeCCCCcccCCCEEEEEcC--CceEE
Confidence            5677777753  3 333444 58999999999998887 55555 56553 46677764  36664

>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*

Probab=84.75  E-value=2.3  Score=38.43  Aligned_cols=37  Identities=22%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             EEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEE
Q 023727          141 VTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDV  178 (278)
Q Consensus       141 ~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV  178 (278)
                      .+.+|..|.|.|..|++|.|.|.|...|| -..-++.|
T Consensus       226 ~~~~d~~G~f~~~~l~~G~y~v~v~a~g~-p~~~~~~~  262 (274)
T 1ti6_B          226 SAETNFFGEFKFDALDNGEYTVEIDADGK-SYSDTVVI  262 (274)
T ss_dssp             EEECCTTSEEEEEEECSEEEEEEEEETTE-EEEEEEEE
T ss_pred             EEeecCcCcEEEeccCCcceEEEEecCCC-CccceeEE
Confidence            47789999999999999999999999999 55566666

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=84.59  E-value=1.1  Score=34.29  Aligned_cols=45  Identities=20%  Similarity=0.262  Sum_probs=35.9

Q ss_pred             ecCCccEEEccCC--CeeEEEEEEecCcce--eeEEEEEEcCCCCceEE
Q 023727          144 LRPDGYFSFQNMS--AGTHLIEVAAIGYFF--SPVRVDVSARHPGKVQA  188 (278)
Q Consensus       144 ~~~dG~F~f~nVP--~GsY~LeVss~gy~F--~p~RVdV~~~~~G~VrA  188 (278)
                      -+.||+|.+.=+|  +|.|.|.|...|..-  .|+++.|....+++|+|
T Consensus        42 d~~dGtY~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v~V~~~~~~~v~~   90 (93)
T 2d7n_A           42 DNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFYVDAINSRHSGP   90 (93)
T ss_dssp             ECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEEECBCCSCCCCC
T ss_pred             ECCCCEEEEEEEccCCEEEEEEEEECCEeCCCCCeEEEEecCCCceEEe
Confidence            3578999998887  499999999998654  47889998766677765

>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}

Probab=83.12  E-value=5.1  Score=31.00  Aligned_cols=56  Identities=16%  Similarity=0.148  Sum_probs=42.2

Q ss_pred             CceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCc
Q 023727          103 DGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGY  169 (278)
Q Consensus       103 ~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy  169 (278)
                      +..+|.|.....++.          ...+.+.++|+....-+..--+|.+... +|+|+|.+...|-
T Consensus        17 ~~v~i~a~A~D~dg~----------V~kVef~vdg~~vg~dt~apy~~~w~~~-~G~htl~a~AtD~   72 (98)
T 3pe9_A           17 EFLKITATASDSDGK----------ISRVDFLVDGEVIGSDREAPYEYEWKAV-EGNHEISVIAYDD   72 (98)
T ss_dssp             SEEEEEEEECCSSSC----------EEEEEEEETTEEEEEECSSSEEEEEECC-SEEEEEEEEEEET
T ss_pred             CEEEEEEEEEeCCCC----------EEEEEEEECCEEecccccCCEEEEEEcC-CccEEEEEEEEEC
Confidence            457788887544331          5788999999887776666668888877 8999999987764

>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*

Probab=81.51  E-value=2.2  Score=38.44  Aligned_cols=53  Identities=19%  Similarity=0.238  Sum_probs=38.8

Q ss_pred             CCCceEEEEEEECCCCCCCCCCCCCCCceeEEEEEc----Cc-------------------eeEEEecCCccEEEccCCC
Q 023727          101 SGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLN----GG-------------------EHVTFLRPDGYFSFQNMSA  157 (278)
Q Consensus       101 ~~~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~----g~-------------------~~~a~~~~dG~F~f~nVP~  157 (278)
                      .++...|+|+|...+++|         ++++.|-+=    +|                   .-...+|++|.|.|.-|.|
T Consensus        75 ~G~~i~v~G~V~D~~G~P---------v~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~P  145 (241)
T 2bum_B           75 IGERVIVHGYVRDQFGRP---------VKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKP  145 (241)
T ss_dssp             SSCEEEEEEEEEETTSCB---------CCSCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEEECC
T ss_pred             CCcEEEEEEEEECCCCCC---------CCCcEEEEEecCCCceeCCCCCCcccccCCCccceeEEEeCCCceEEEEEecC
Confidence            356799999999877665         344555541    01                   1246789999999999999


Q ss_pred             eeEEE
Q 023727          158 GTHLI  162 (278)
Q Consensus       158 GsY~L  162 (278)
                      |.|-+
T Consensus       146 g~Yp~  150 (241)
T 2bum_B          146 GPYPW  150 (241)
T ss_dssp             CCEEE
T ss_pred             Ccccc
Confidence            99975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	278
d1nkga1	87	b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, m	2e-04

>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Length = 87

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Rhamnogalacturonase B, RhgB, middle domain
domain: Rhamnogalacturonase B, RhgB, middle domain
species: Aspergillus aculeatus [TaxId: 5053]

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 98  SSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSA 157
           +SG G    ++G            G+       V    +  ++ T+    G F+   M  
Sbjct: 4   ASGRG---KVAGTAS---------GADSSMDWVVHWYNDAAQYWTYTSSSGSFTSPAMKP 51

Query: 158 GTHLIEVAAIGYFFSPVRVDVSA 180
           GT+ +      Y  +   V VSA
Sbjct: 52  GTYTMVYYQGEYAVATSSVTVSA 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	278
d1nkga1	87	Rhamnogalacturonase B, RhgB, middle domain {Asperg	99.19
d1h8la1	79	Carboxypeptidase D C-terminal domain {Crested duck	98.83
d1vlfn1	79	Transhydroxylase beta subunit, BthL, C-terminal do	98.48
d1uwya1	107	Carboxypeptidase M C-terminal domain {Human (Homo	98.41
d2b59b2	96	Cellulosomal scaffolding protein A {Clostridium th	97.94
d1xpna_	170	Hypothetical protein PA1324 {Pseudomonas aeruginos	91.73
d2burb1	238	Protocatechuate-3,4-dioxygenase, beta chain {Acine	87.15
d3pccm_	236	Protocatechuate-3,4-dioxygenase, beta chain {Pseud	85.15
d3pcca_	200	Protocatechuate-3,4-dioxygenase, alpha chain {Pseu	82.5

>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Rhamnogalacturonase B, RhgB, middle domain
domain: Rhamnogalacturonase B, RhgB, middle domain
species: Aspergillus aculeatus [TaxId: 5053]

Probab=99.19  E-value=3.7e-11  Score=90.59  Aligned_cols=71  Identities=20%  Similarity=0.149  Sum_probs=62.9

Q ss_pred             CCceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcC
Q 023727          102 GDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSAR  181 (278)
Q Consensus       102 ~~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~  181 (278)
                      .+..+|+|+|...+..+         ...+.|.+++.++++.+|.||.|.|.+||+|+|.|.++..||......|+|.+.
T Consensus         5 ~~~GtvsG~V~~~~~~~---------~~~v~v~~~~~~~~~~Td~~G~f~i~~l~~G~Y~l~v~~~Gy~~~~~~v~v~~g   75 (87)
T d1nkga1           5 SGRGKVAGTASGADSSM---------DWVVHWYNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVATSSVTVSAG   75 (87)
T ss_dssp             GGCBEEEEEEESSCTTS---------CEEEEEECSSCEEEEECCTTCEEECCCBCSEEEEEEEEETTEEEEEEEEEECTT
T ss_pred             CcEEEEEEEEECCCCCc---------ccEEEEEeCCcEEEEEeCCCCcEEEcccCCCCEEEEEEEccccceeeeEEEcCC
Confidence            35689999998776643         367999999999999999999999999999999999999999988888888764

>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Carboxypeptidase regulatory domain
domain: Carboxypeptidase D C-terminal domain
species: Crested duck (Lophonetta specularioides) [TaxId: 8836]

Probab=98.83  E-value=6.9e-09  Score=75.74  Aligned_cols=65  Identities=22%  Similarity=0.183  Sum_probs=56.7

Q ss_pred             EEEEEECCC-CCCCCCCCCCCCceeEEEEEcCceeEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcC
Q 023727          107 ISGRVKLPG-MSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSAR  181 (278)
Q Consensus       107 IsGrV~~p~-~~p~~~~lp~~~~s~t~V~L~g~~~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~  181 (278)
                      |+|+|.... +.|         ++.++|.+.+....+.+|.+|.| +.++++|.|.|.+++.||.-....|.|...
T Consensus         2 I~G~V~d~~tg~p---------i~~a~V~v~~~~~~~~Td~~G~f-~~~l~~G~y~l~vs~~Gy~~~~~~v~v~~~   67 (79)
T d1h8la1           2 IWGFVLDATDGRG---------ILNATISVADINHPVTTYKDGDY-WRLLVQGTYKVTASARGYDPVTKTVEVDSK   67 (79)
T ss_dssp             EEEEEEETTTCSB---------CTTCEEEETTEEEEEECCTTSEE-EECCCSEEEEEEEECTTBCCEEEEEEECSS
T ss_pred             cEEEEEECCCCCC---------cCCeEEEEeCccccEEecCCCCE-EEEeecccEEEEEEEEEeccEEEEEEECCC
Confidence            899999654 443         67899999999999999999999 558999999999999999998888888653

>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Cna protein B-type domain
family: Cna protein B-type domain
domain: Transhydroxylase beta subunit, BthL, C-terminal domain
species: Pelobacter acidigallici [TaxId: 35816]

Probab=98.48  E-value=1.4e-07  Score=69.79  Aligned_cols=60  Identities=23%  Similarity=0.294  Sum_probs=47.4

Q ss_pred             ceEEEEEEECCCCCCCCCCCCCCCceeEEEEEcC-ce--eEEEecCCccEEEccCCCeeEEEEEEecCcceeeE
Q 023727          104 GFSISGRVKLPGMSLKAFGSPGGKASNVKVVLNG-GE--HVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPV  174 (278)
Q Consensus       104 ~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g-~~--~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~  174 (278)
                      -|.++|.+. . ++|         ++.++|.|.+ ++  ..+.+|++|.|+|.++++|.|.|+|+..||.....
T Consensus         2 n~~~~gi~~-~-G~~---------v~gA~V~L~~~~~~v~~t~Td~~G~F~f~~l~~G~Y~l~is~~Gy~~~~~   64 (79)
T d1vlfn1           2 NYVTAGILV-Q-GDC---------FEGAKVVLKSGGKEVASAETNFFGEFKFDALDNGEYTVEIDADGKSYSDT   64 (79)
T ss_dssp             EEEEEEEEE-T-TEE---------CTTCEEEEEETTEEEEEEECCTTSEEEEEEECSEEEEEEEEETTEEEEEE
T ss_pred             CcEEeeEEE-C-Ccc---------ccccEEEEECCCCeEEeeEECCCCcEEEEecCCCCEEEEEEEecccceee
Confidence            378888664 3 443         5678888764 32  56889999999999999999999999999977654

>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Carboxypeptidase regulatory domain
domain: Carboxypeptidase M C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.8e-07  Score=70.56  Aligned_cols=65  Identities=17%  Similarity=0.119  Sum_probs=54.5

Q ss_pred             EEEEEECCCCCCCCCCCCCCCceeEEEEEcCce--eEEEecCCccEEEccCCCeeEEEEEEecCcceeeEEEEEEcC
Q 023727          107 ISGRVKLPGMSLKAFGSPGGKASNVKVVLNGGE--HVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSAR  181 (278)
Q Consensus       107 IsGrV~~p~~~p~~~~lp~~~~s~t~V~L~g~~--~~a~~~~dG~F~f~nVP~GsY~LeVss~gy~F~p~RVdV~~~  181 (278)
                      |+|+|....++|         +++++|.|.+..  ..+.+|.+|.|.+ ++++|+|.|+|+..||......|.|...
T Consensus         2 I~G~V~D~~g~p---------i~~A~V~i~~~~~~~~~~td~~G~f~~-~~~~g~Y~l~vs~~Gy~~~~~~v~v~~~   68 (107)
T d1uwya1           2 VKGQVFDQNGNP---------LPNVIVEVQDRKHICPYRTNKYGEYYL-LLLPGSYIINVTVPGHDPHITKVIIPEK   68 (107)
T ss_dssp             EEEEEECTTSCB---------CCSCEEEETTCCCSSCCBCCTTCEEEE-CCCSEEEEEEEECSSSCCEEEEEEECSS
T ss_pred             cEEEEECCCCCC---------cCcEEEEEEcccccceeecchhheeee-ecCCccEEEEEEEEEeeeEEEEEEECCC
Confidence            899999776654         678999998653  4577899999955 7999999999999999999999988764

>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Pre-dockerin domain
domain: Cellulosomal scaffolding protein A
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.94  E-value=1.7e-05  Score=60.06  Aligned_cols=70  Identities=21%  Similarity=0.317  Sum_probs=55.9

Q ss_pred             ceEEEEEEECCCCCCCCCCCCCCCc----eeEEEEEcCceeEEEecCCccEEEccCCCee--EEEEEEecCcceeeEE-E
Q 023727          104 GFSISGRVKLPGMSLKAFGSPGGKA----SNVKVVLNGGEHVTFLRPDGYFSFQNMSAGT--HLIEVAAIGYFFSPVR-V  176 (278)
Q Consensus       104 ~~tIsGrV~~p~~~p~~~~lp~~~~----s~t~V~L~g~~~~a~~~~dG~F~f~nVP~Gs--Y~LeVss~gy~F~p~R-V  176 (278)
                      .++|+|-|...=.      -++...    +.-+|.+-|+++.+.+|++|+|+|.+||.|.  |+|+++-..|.-+.+. |
T Consensus         1 ~~tvsGYi~~DF~------~~~~~a~~vKsGF~V~i~GT~l~~vTD~nGYFEI~gvp~~~~~~Tl~Isk~~YL~r~itnv   74 (96)
T d2b59b2           1 GYKVSGYILPDFS------FDATVAPLVKAGFKVEIVGTELYAVTDANGYFEITGVPANASGYTLKISRATYLDRVIANV   74 (96)
T ss_dssp             CEEEEEEEEESSC------CCTTTHHHHHSCCEEEETTSSCEEECCTTSEEEEEEECCEEEEEEEEEECTEECCEEEEEE
T ss_pred             CceEEEEEcCccc------cCcccchhhhcCcEEEEEeeEeEEEeccCceEEEecCcCCCcceEEEEcchhhhhheeeee
Confidence            3789999974322      222222    4567999999999999999999999999999  9999999999888776 6


Q ss_pred             EEE
Q 023727          177 DVS  179 (278)
Q Consensus       177 dV~  179 (278)
                      .+.
T Consensus        75 ~~t   77 (96)
T d2b59b2          75 VVT   77 (96)
T ss_dssp             EES
T ss_pred             Eee
Confidence            664

>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Hypothetical protein PA1324
family: Hypothetical protein PA1324
domain: Hypothetical protein PA1324
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.73  E-value=0.078  Score=43.71  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=22.9

Q ss_pred             EEEecCCccEEEccCCCeeEEEEEEe
Q 023727          141 VTFLRPDGYFSFQNMSAGTHLIEVAA  166 (278)
Q Consensus       141 ~a~~~~dG~F~f~nVP~GsY~LeVss  166 (278)
                      .+..|.+|.|+|.+||+|+|-|...-
T Consensus       110 ~T~cD~~G~F~F~gLp~G~Yyv~~~v  135 (170)
T d1xpna_         110 EATTDQNGRFDFDHIPNGTYYISSEL  135 (170)
T ss_dssp             EEEECSSCEEEECSCCSEEEEEEEEE
T ss_pred             eeEecCCCcEEEcCCCCccEEEEEEE
Confidence            58899999999999999999887653

>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Protocatechuate-3,4-dioxygenase, beta chain
species: Acinetobacter calcoaceticus, adp1 [TaxId: 471]

Probab=87.15  E-value=0.41  Score=41.06  Aligned_cols=54  Identities=19%  Similarity=0.224  Sum_probs=40.3

Q ss_pred             CCCCceEEEEEEECCCCCCCCCCCCCCCceeEEEEEc----Cc-------------------eeEEEecCCccEEEccCC
Q 023727          100 GSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLN----GG-------------------EHVTFLRPDGYFSFQNMS  156 (278)
Q Consensus       100 ~~~~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~----g~-------------------~~~a~~~~dG~F~f~nVP  156 (278)
                      ..++...|+|+|...+++|         ++++.|-+=    .|                   .-...+|++|.|.|.-|.
T Consensus        71 ~~Ge~i~v~G~V~D~~g~P---------v~~A~VEiWQada~G~Y~~~~d~~~~~~d~~f~grGr~~TD~~G~y~F~TI~  141 (238)
T d2burb1          71 PIGERVIVHGYVRDQFGRP---------VKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIK  141 (238)
T ss_dssp             CSSCEEEEEEEEEETTSCB---------CCSCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEEEC
T ss_pred             CCcCEEEEEEEEECCCCCC---------CCCcEEEEEecCCCcccCCccccccCccCCCcceEEEEEeCCCCeEEEEeCC
Confidence            4568899999999877765         455666551    11                   114789999999999999


Q ss_pred             CeeEEE
Q 023727          157 AGTHLI  162 (278)
Q Consensus       157 ~GsY~L  162 (278)
                      ||.|-.
T Consensus       142 Pg~Yp~  147 (238)
T d2burb1         142 PGPYPW  147 (238)
T ss_dssp             CCCEEE
T ss_pred             CcccCC
Confidence            999954

>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Protocatechuate-3,4-dioxygenase, beta chain
species: Pseudomonas putida [TaxId: 303]

Probab=85.15  E-value=0.44  Score=40.72  Aligned_cols=53  Identities=28%  Similarity=0.419  Sum_probs=39.7

Q ss_pred             CCCCceEEEEEEECCCCCCCCCCCCCCCceeEEEEE---c-C-------------------ceeEEEecCCccEEEccCC
Q 023727          100 GSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVL---N-G-------------------GEHVTFLRPDGYFSFQNMS  156 (278)
Q Consensus       100 ~~~~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L---~-g-------------------~~~~a~~~~dG~F~f~nVP  156 (278)
                      +.++...|+|+|...+.+|         ++++.|-+   | +                   +.-...+|.||.|.|.-|.
T Consensus        73 ~~Ge~i~v~GrV~D~~g~P---------v~~a~VEIWQana~G~Y~~~~d~~~~~~d~~f~grGr~~Td~~G~y~F~TI~  143 (236)
T d3pccm_          73 PIGERIIVAGRVVDQYGKP---------VPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIK  143 (236)
T ss_dssp             CSSCEEEEEEEEEETTSCB---------CTTCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEEEC
T ss_pred             CCCCEEEEEEEEECCCCCC---------cCCcEEEEEecCCCceECCCccccccccCCccceEEEEEcCCCCeEEEEeeC
Confidence            4578899999999877765         34555555   1 0                   1124679999999999999


Q ss_pred             CeeEE
Q 023727          157 AGTHL  161 (278)
Q Consensus       157 ~GsY~  161 (278)
                      ||.|-
T Consensus       144 PG~Yp  148 (236)
T d3pccm_         144 PGPYP  148 (236)
T ss_dssp             CCCEE
T ss_pred             CcCcc
Confidence            99996

>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Protocatechuate-3,4-dioxygenase, alpha chain
species: Pseudomonas putida [TaxId: 303]

Probab=82.50  E-value=1  Score=37.20  Aligned_cols=53  Identities=13%  Similarity=0.158  Sum_probs=35.9

Q ss_pred             CCCCceEEEEEEECCCCCCCCCCCCCCCceeEEEEEc----Cc---------------eeEEEecCCccEEEccCCCeeE
Q 023727          100 GSGDGFSISGRVKLPGMSLKAFGSPGGKASNVKVVLN----GG---------------EHVTFLRPDGYFSFQNMSAGTH  160 (278)
Q Consensus       100 ~~~~~~tIsGrV~~p~~~p~~~~lp~~~~s~t~V~L~----g~---------------~~~a~~~~dG~F~f~nVP~GsY  160 (278)
                      +.+....|+|+|...+.+|         ++++.|-+=    .|               .....++.+|.|.|.-|.||.|
T Consensus        44 ~~G~~i~l~G~V~D~~g~P---------i~~A~veiWqad~~G~Y~~~~~~~~~~~~~gr~~~t~~~G~~~f~TI~Pg~Y  114 (200)
T d3pcca_          44 APGEHILLLGQVYDGNGHL---------VRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVV  114 (200)
T ss_dssp             SSSCEEEEEEEEECTTSCB---------CTTCEEEEECCCTTSCCCCBCCTTSSBCSEEEEECCSSSCEEEEEEECCCCE
T ss_pred             CCCCEEEEEEEEECCCCCC---------cCceEEEEEecCCCceeccCCCCccccCcccceeecCCCCeEEEEEecCccc
Confidence            4567799999999876655         345555551    01               1123344569999999999999


Q ss_pred             E
Q 023727          161 L  161 (278)
Q Consensus       161 ~  161 (278)
                      -
T Consensus       115 ~  115 (200)
T d3pcca_         115 N  115 (200)
T ss_dssp             E
T ss_pred             c
Confidence            4