Citrus Sinensis ID: 023742

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAVSFFSLTMS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHEEHEHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccEEEEHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLlrpkphleglVIATCASGNLGNLLLIIVPAicheqgspfgnrdvcssVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAqaaepeevpkevnkdFDANAQTQllrgttddqeDVSVLVAStksssdpecqiivpqashlqtrKESFWKRSLEFLHQLLEEllapptlaAVSFFSLTMS
Flexible Loop (DISEMBL)
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAaepeevpkevnKDFDANAQTQllrgttddqedVSVLVAstksssdpecQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAVSFFSLTMS
Low Complexity Region (SEG)
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSleflhqlleellapptlaaVSFFSLTMS
Disordered region (IsUnstruct)
**FWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSV*************FFIWSYSYQLIKQSSVRYKA****************************************************QIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAVSFFS****
Disordered Region (DISOPRED)
*GFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSS*****************************************************************************SLEFLHQLLEELLAPPTLAAVSFFSLTMS
Disordered Region (DISEMBL)
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRY**************EVNKDFDANAQTQLLRGTTDDQEDVSVLVA********ECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAVSFFSLTMS
Disordered Region (DISPRO)
*GFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYK*L************************************************************LQTRKESFWKRSLEFLHQLLEELLAPPTLAAVSFFSLTMS
Transmembrane Helix (TMHMM)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAVSFFSLTMS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	278	2.2.26 [Sep-21-2011]
P38355	427	Uncharacterized transport	yes	no	0.539	0.351	0.262	1e-05
O14197	452	Uncharacterized transport	yes	no	0.546	0.336	0.225	0.0005

>sp|P38355|YB8B_YEAST Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR287W PE=1 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 10/160 (6%)

Query: 14  IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW 73
           ++QV++I++ G   A+    LL   +++ ++ +   +FTP L+F+ LAK++++ +I    
Sbjct: 18  VLQVVIIALAGFWSASS--GLLPKQSQKIISLLNVDLFTPCLIFSKLAKSLSMAKIFEIA 75

Query: 74  FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL-------LLIIVPA 126
            +P+   +T  I  I G I+ ++L         V+A    GN  +L       L   +P 
Sbjct: 76  IIPIFFGLTTGISFISGKIMSRILDLDKDETNFVVANSVFGNSNSLPVSLTLSLAYTLPN 135

Query: 127 ICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQ 166
           +  +Q  P  NRD  +S G+ Y      +G    WS+ Y 
Sbjct: 136 LTWDQ-IPNDNRDNVASRGILYLLIFQQIGQMLRWSWGYN 174

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O14197|YDQ4_SCHPO Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 15  VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF 74
           ++V++I++ G ++A +    L  DA++ ++ +    FTP L+F  +   + L+ +I    
Sbjct: 24  LEVIVIALGGYVLAKK--GFLPRDAQKVISSLNVYFFTPCLVFEKVGNGLNLKMLIDLSL 81

Query: 75  MPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGS- 133
           +PV   +      ++ +++ KL R  P       A     N  +L L +V ++       
Sbjct: 82  LPVFYVIISAASILISFLLAKLFRLTPRQRNFATACITFQNSNSLPLALVSSLATTVKDL 141

Query: 134 -----PFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 168
                P    D  +S G+ Y      LG    WSY Y+++
Sbjct: 142 LWDKIPDDTPDKVASRGIMYLLIFSQLGQALRWSYGYRIL 181

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
255561457	406	auxin:hydrogen symporter, putative [Rici	0.920	0.630	0.644	2e-94
224081467	397	predicted protein [Populus trichocarpa]	0.888	0.622	0.637	8e-93
359480743	421	PREDICTED: uncharacterized transporter Y	0.967	0.638	0.581	2e-88
357484233	420	Transporter, putative [Medicago truncatu	0.953	0.630	0.594	1e-86
356538399	419	PREDICTED: uncharacterized transporter Y	0.956	0.634	0.572	1e-86
356496547	419	PREDICTED: uncharacterized transporter Y	0.956	0.634	0.576	3e-86
449495132	412	PREDICTED: uncharacterized transporter Y	0.942	0.635	0.575	7e-84
297797791	395	predicted protein [Arabidopsis lyrata su	0.881	0.620	0.578	1e-83
15239215	395	auxin efflux carrier family protein [Ara	0.881	0.620	0.571	7e-83
357484229	421	Transporter, putative [Medicago truncatu	0.942	0.622	0.564	9e-83

>gi|255561457|ref|XP_002521739.1| auxin:hydrogen symporter, putative [Ricinus communis] gi|223539130|gb|EEF40726.1| auxin:hydrogen symporter, putative [Ricinus communis]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 176/273 (64%), Positives = 216/273 (79%), Gaps = 17/273 (6%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
           MGFWT FEVASMPI+QVLLIS LGA MAT Y NLLT+DAR+SLNK+VF VFTPSLMFASL
Sbjct: 1   MGFWTLFEVASMPIIQVLLISGLGAFMATNYCNLLTSDARKSLNKIVFVVFTPSLMFASL 60

Query: 61  AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
           A+TVTL++IISWWFMPVNV +TFLIGGILGW++VK+L+PKP+LEGLVIATC+SGNLGNLL
Sbjct: 61  AQTVTLQDIISWWFMPVNVGLTFLIGGILGWVLVKVLKPKPYLEGLVIATCSSGNLGNLL 120

Query: 121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
           LI+VPAIC+E GSPFG+R+ C S+GLSYASFSMA+GGF+IW+Y+Y LI+ S+ + +A+ Q
Sbjct: 121 LIVVPAICNENGSPFGDRETCKSIGLSYASFSMAIGGFYIWTYTYHLIRTSATKLRAI-Q 179

Query: 181 AAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQ 240
           A   EE  K  NKD +A  +T LL+G  +DQE V + V S KS  D E Q   P +S   
Sbjct: 180 AE--EEASKAPNKDLEATPETHLLKG--EDQEHVVISVPSIKSVDDQESQ---PASS--- 229

Query: 241 TRKESFWKRSLEFLHQLLEELLAPPTLAAVSFF 273
                 W + +  L Q++EELLAPPT+AA+  F
Sbjct: 230 ------WSKWIGILRQIMEELLAPPTIAAIFGF 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081467|ref|XP_002306421.1| predicted protein [Populus trichocarpa] gi|222855870|gb|EEE93417.1| predicted protein [Populus trichocarpa]

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 174/273 (63%), Positives = 205/273 (75%), Gaps = 26/273 (9%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
           MGFWT FEVAS+PI+QVLLIS  GALMAT+Y NLL  DAR+SLNK+VF VFTPSLMFASL
Sbjct: 1   MGFWTLFEVASLPIIQVLLISFFGALMATEYLNLLPKDARKSLNKLVFMVFTPSLMFASL 60

Query: 61  AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
           AKTVTLE+IISWWFMPVN+  TFLIGGILGWI+VK+LRPKP+LEGLVIATC+SGNLGNLL
Sbjct: 61  AKTVTLEDIISWWFMPVNIGFTFLIGGILGWILVKILRPKPYLEGLVIATCSSGNLGNLL 120

Query: 121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
           LIIVPAIC E GSPFG+  +C+SVGLSYASFSMALGGFFIW+Y++ LI+ S+ + KAL  
Sbjct: 121 LIIVPAICTEDGSPFGDSSICTSVGLSYASFSMALGGFFIWTYTFHLIRTSAAKLKALQA 180

Query: 181 AAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQ 240
             E  + P   N DFDA+ +T LL G   DQE+V++       SS               
Sbjct: 181 VVEASKAP---NNDFDASQETHLLIG--QDQENVAIEHGKGNVSS--------------- 220

Query: 241 TRKESFWKRSLEFLHQLLEELLAPPTLAAVSFF 273
                 W + + FLHQ+LEELL PPT+AA+  F
Sbjct: 221 ------WTKLIGFLHQILEELLEPPTIAAILGF 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480743|ref|XP_002276744.2| PREDICTED: uncharacterized transporter YBR287W-like [Vitis vinifera] gi|296082565|emb|CBI21570.3| unnamed protein product [Vitis vinifera]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 160/275 (58%), Positives = 203/275 (73%), Gaps = 6/275 (2%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
           MGFWT FEVASMPI+QVL+I  +GA +AT Y N+L ADAR+S+NK+VF  FTPSLMFA L
Sbjct: 1   MGFWTLFEVASMPILQVLIIGSVGAFLATGYCNILPADARKSVNKIVFVAFTPSLMFAGL 60

Query: 61  AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
           A+TVTL+++ISWWFMPVN+ +TFL GGILGW+VVK+L+PK HLEGL++ATC+SGNLGNLL
Sbjct: 61  AQTVTLQDMISWWFMPVNIGLTFLFGGILGWLVVKILKPKQHLEGLIMATCSSGNLGNLL 120

Query: 121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
           LI++PAIC E GSPFG+   C + GLSYAS S ALGG FIW+Y+YQLI+ S  +Y A+  
Sbjct: 121 LIVIPAICEEDGSPFGDHASCGASGLSYASLSTALGGIFIWTYTYQLIRSSVTKYYAIQD 180

Query: 181 AAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQ--ASH 238
             +  +VP   NK+ DAN +T LL+G  D +   S    S  +  D E Q+IV Q  A  
Sbjct: 181 VKDVIKVP---NKELDANKETHLLKG-EDQEHGTSSFPPSNSTGEDVEKQVIVSQESAGS 236

Query: 239 LQTRKESFWKRSLEFLHQLLEELLAPPTLAAVSFF 273
           L+  KESFW R      Q+++ELL+PPTL A+  F
Sbjct: 237 LEDGKESFWARVAGIASQMMKELLSPPTLGAILGF 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484233|ref|XP_003612404.1| Transporter, putative [Medicago truncatula] gi|355513739|gb|AES95362.1| Transporter, putative [Medicago truncatula]

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 164/276 (59%), Positives = 207/276 (75%), Gaps = 11/276 (3%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWN-LLTADARRSLNKMVFTVFTPSLMFAS 59
           MGF    EVASMP++QVLLIS LGA MATQY+N LL+ D R+SLNK+VF VFTPSL+FAS
Sbjct: 1   MGFLQLLEVASMPVIQVLLISALGAFMATQYFNNLLSPDFRKSLNKVVFIVFTPSLVFAS 60

Query: 60  LAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL 119
            AK+V+LE++ISWWFMPVNV +TFLIGGILGWI+VKLLRP   +EGL+IA+C+SGN+GNL
Sbjct: 61  FAKSVSLEDMISWWFMPVNVGLTFLIGGILGWILVKLLRPNLKVEGLIIASCSSGNMGNL 120

Query: 120 LLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALA 179
            ++I+PAIC+E+G PFG RDVC S  LSYASFSMALGG FIW+Y+YQ IK  S+++KAL 
Sbjct: 121 PIVIIPAICNEKGGPFGARDVCHSNALSYASFSMALGGIFIWTYTYQTIKSRSLKFKAL- 179

Query: 180 QAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASH- 238
              E  E+ K  NKD D NA T LL+G   D E+ ++ V+ +    D E QII  Q    
Sbjct: 180 ---EAAEILKAPNKDLDGNADTPLLKG--KDNENTAIEVSPSSYIEDSESQIIDEQDQSI 234

Query: 239 -LQTRKESFWKRSLEFLHQLLEELLAPPTLAAVSFF 273
            L+  K+SF+ R +E L  LL EL++PP +A  +FF
Sbjct: 235 VLKKEKQSFFNRMIEVLSHLLAELMSPPAIA--TFF 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538399|ref|XP_003537691.1| PREDICTED: uncharacterized transporter YBR287W-like [Glycine max]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 158/276 (57%), Positives = 214/276 (77%), Gaps = 10/276 (3%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYW-NLLTADARRSLNKMVFTVFTPSLMFAS 59
           MGF    EVASMP++QVLLIS LGALMATQ++ N+L+ D R++LNK+VF +FTPSL+F+S
Sbjct: 1   MGFLELLEVASMPVIQVLLISALGALMATQFFDNILSPDIRKALNKIVFVIFTPSLVFSS 60

Query: 60  LAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL 119
            AK+V+L+++ISWWFMPVNV +TFLIGGI+GWI+VKLL+P   +EGL+IA C+SGN+GNL
Sbjct: 61  FAKSVSLDDMISWWFMPVNVGLTFLIGGIIGWILVKLLKPNLKVEGLIIAACSSGNMGNL 120

Query: 120 LLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALA 179
            ++I+PAIC E+G PFG RD+C +  LSYASFSMALGG FIW+Y+YQ +K  S+++KAL 
Sbjct: 121 PIVIIPAICDEKGGPFGARDICRNNALSYASFSMALGGIFIWTYTYQTVKSRSLKFKAL- 179

Query: 180 QAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQ-ASH 238
           +AAE  +VP   NKDFDANA+T LL+   +D ED ++ V ++    D E QIIV Q  S+
Sbjct: 180 EAAEIVKVP---NKDFDANAETHLLK--DNDSEDTTIQVPTSTYIGDTENQIIVDQDQSN 234

Query: 239 LQTRKESFWKRSLEFLHQLLEELLAPPTLAAVSFFS 274
           +  ++ES W R +E +  LL EL++PP +A  +FF 
Sbjct: 235 VSKKRESSWHRMVEVMSHLLAELMSPPAIA--TFFG 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496547|ref|XP_003517128.1| PREDICTED: uncharacterized transporter YBR287W-like isoform 2 [Glycine max]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 159/276 (57%), Positives = 213/276 (77%), Gaps = 10/276 (3%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYW-NLLTADARRSLNKMVFTVFTPSLMFAS 59
           MGF    EVAS+P++QVLLIS LGALMATQY+ NLL+ D R++LNK+VF +FTPSL+F+S
Sbjct: 1   MGFLELLEVASLPVIQVLLISALGALMATQYFDNLLSPDIRKALNKIVFLIFTPSLVFSS 60

Query: 60  LAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL 119
            AK+V+L+++ISWWFMPVNV +TFLIGGI+GWI+VKLL+P   +EGL+IA C+SGN+GNL
Sbjct: 61  FAKSVSLDDMISWWFMPVNVGLTFLIGGIIGWILVKLLKPNLKVEGLIIAACSSGNMGNL 120

Query: 120 LLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALA 179
            ++I+PAIC E+G PFG RD+C +  LSYASFSMALGG FIW+Y+YQ +K  S+++KAL 
Sbjct: 121 PIVIIPAICDEKGGPFGARDICRNNALSYASFSMALGGIFIWTYTYQTVKSRSLKFKAL- 179

Query: 180 QAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQ-ASH 238
           +AAE  +VP   NKDFDANA+T LL+   +D ED ++ V ++    D E QIIV Q  S+
Sbjct: 180 EAAEIVKVP---NKDFDANAETHLLK--DNDSEDTTIEVPTSTYIGDTENQIIVDQDQSN 234

Query: 239 LQTRKESFWKRSLEFLHQLLEELLAPPTLAAVSFFS 274
           +  + ES W R +E +  LL EL++PP +A  +FF 
Sbjct: 235 VSKKTESSWHRMVEVMSHLLAELVSPPAIA--TFFG 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495132|ref|XP_004159743.1| PREDICTED: uncharacterized transporter YBR287W-like [Cucumis sativus]

 Score =  316 bits (810), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 157/273 (57%), Positives = 199/273 (72%), Gaps = 11/273 (4%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
           MG  +  EVA MP +QVLLI ++GAL+AT Y NLL A AR SLNK+VFTVFTP LMFA+L
Sbjct: 1   MGLLSLLEVALMPNLQVLLICLVGALLATDYCNLLPAHARTSLNKIVFTVFTPCLMFANL 60

Query: 61  AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
           AKTVT ++I+SWWFMPVN+ +TFL GGILGWIVVK+L+PKP+LEGLVIA  +SGNLGNLL
Sbjct: 61  AKTVTFQDIVSWWFMPVNIGLTFLFGGILGWIVVKILKPKPYLEGLVIAASSSGNLGNLL 120

Query: 121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
           LIIVPAIC E GSPFG+RD C+S+GLSYASFSMALGGF++W+Y+YQL+K SS+R KAL +
Sbjct: 121 LIIVPAICDEDGSPFGDRDTCTSLGLSYASFSMALGGFYLWTYTYQLVKTSSMRLKAL-E 179

Query: 181 AAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQ 240
             E EE  K  N   + + Q  LL     +Q  +  +   ++ S D          S  +
Sbjct: 180 VEEAEEQLKAPNHASNGDLQAHLLNKQNGEQAHLLPVSVESQHSVD----------SLEK 229

Query: 241 TRKESFWKRSLEFLHQLLEELLAPPTLAAVSFF 273
               S W ++LEF+H ++EEL+APP+L A+  F
Sbjct: 230 GESPSIWAKTLEFMHSIIEELMAPPSLGAIVGF 262

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797791|ref|XP_002866780.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312615|gb|EFH43039.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 158/273 (57%), Positives = 196/273 (71%), Gaps = 28/273 (10%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
           MGF    EVASMPIVQVLLISVLGA +AT Y +LL+AD RRS+NK+VF VFTP +MFA+L
Sbjct: 1   MGFLELLEVASMPIVQVLLISVLGAFLATDYCSLLSADTRRSVNKLVFVVFTPCIMFANL 60

Query: 61  AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
           A+TVTL++IISWWFMP+NV +TFL+GGILGW+VVKLL PKP L GL+IATCASGN+GNL+
Sbjct: 61  AETVTLQDIISWWFMPINVGITFLVGGILGWLVVKLLNPKPQLHGLIIATCASGNMGNLM 120

Query: 121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
           LI+VPAIC E+GSPFGNR VC S+GLSYASFSMALGGF+IW+YSYQL++ S+ +++AL  
Sbjct: 121 LILVPAICDEEGSPFGNRSVCRSIGLSYASFSMALGGFYIWTYSYQLVRSSATQFRALEA 180

Query: 181 AAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQ 240
           A     + K  NKD D++  T LL+                  + D E Q          
Sbjct: 181 AG----LVKSPNKDIDSDPHTLLLK---------------PHQNQDLEIQ---------G 212

Query: 241 TRKESFWKRSLEFLHQLLEELLAPPTLAAVSFF 273
            +K S      + LHQ+LEEL APPT+ A+  F
Sbjct: 213 KQKVSTGTYIKDLLHQILEELFAPPTIGAILGF 245

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239215|ref|NP_201399.1| auxin efflux carrier family protein [Arabidopsis thaliana] gi|10177113|dbj|BAB10403.1| unnamed protein product [Arabidopsis thaliana] gi|332010751|gb|AED98134.1| auxin efflux carrier family protein [Arabidopsis thaliana]

 Score =  313 bits (801), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 156/273 (57%), Positives = 196/273 (71%), Gaps = 28/273 (10%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
           MGF    EVASMPIVQVLLISVLGA +AT Y +LL+AD RRS+NK+VF VFTP +MFA+L
Sbjct: 1   MGFLELLEVASMPIVQVLLISVLGAFLATDYCSLLSADTRRSVNKLVFVVFTPCIMFANL 60

Query: 61  AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
           A+TVTL++IISWWFMP+NV +TFL+GGILGW+VVKLL PKP L GL+IATCASGN+GNL+
Sbjct: 61  AETVTLQDIISWWFMPINVGITFLVGGILGWLVVKLLNPKPQLHGLIIATCASGNMGNLM 120

Query: 121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
           LI+VPAIC E+GSPFGNR VC S+GLSYASFSMALGGF+IW+YSYQL++ S+ +++AL  
Sbjct: 121 LILVPAICDEEGSPFGNRSVCRSIGLSYASFSMALGGFYIWTYSYQLVRSSATQFRALEA 180

Query: 181 AAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQ 240
           A     + K  NKD D++    LL+                  + D E Q         +
Sbjct: 181 AG----LVKSPNKDIDSDPHALLLK---------------PHQNQDLEIQ------GKQK 215

Query: 241 TRKESFWKRSLEFLHQLLEELLAPPTLAAVSFF 273
               ++ K   + LHQ+LEEL APPT+ A+  F
Sbjct: 216 VSTRTYIK---DLLHQILEELFAPPTIGAILGF 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484229|ref|XP_003612402.1| Transporter, putative [Medicago truncatula] gi|355513737|gb|AES95360.1| Transporter, putative [Medicago truncatula]

 Score =  312 bits (800), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 153/271 (56%), Positives = 204/271 (75%), Gaps = 9/271 (3%)

Query: 1   MGFWTFFEVASMPIVQVLLISVLGALMATQYWN-LLTADARRSLNKMVFTVFTPSLMFAS 59
           MGF    EVASMP++QVLL+S LGA MATQY+N LL+ D R+SLNK+VF +FTPSL+F+S
Sbjct: 1   MGFVQLLEVASMPVIQVLLVSALGAFMATQYFNNLLSPDFRKSLNKVVFFIFTPSLIFSS 60

Query: 60  LAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL 119
            AK+V+L+++ISWWFMPVNV +TFLIGGILGW++VKLLRP   +EGL+IA C+SGN+GNL
Sbjct: 61  FAKSVSLQDMISWWFMPVNVGLTFLIGGILGWLLVKLLRPNLKVEGLIIAACSSGNMGNL 120

Query: 120 LLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALA 179
            ++I+PAIC E+G PFG RDVC S  LSYASFSMALGG F+W+Y++Q I+ SS+R+KAL 
Sbjct: 121 PIVIIPAICDEKGGPFGARDVCRSNALSYASFSMALGGIFVWTYTFQTIRSSSLRFKAL- 179

Query: 180 QAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHL 239
              E  E+ K  NKD + N +T LL+G  D+   + VL +S     D E QI+  Q    
Sbjct: 180 ---EAAEILKAPNKDLEGNVETPLLKGKDDENAVIEVLPSSYI--EDSESQIVNEQDQSH 234

Query: 240 QTRKE--SFWKRSLEFLHQLLEELLAPPTLA 268
           +++KE  SF+KR +E +  LL EL++PP ++
Sbjct: 235 ESKKEKQSFFKRIIEVVTHLLAELISPPAIS 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2156847	395	AT5G65980 "AT5G65980" [Arabido	0.723	0.508	0.678	1.1e-73
TAIR|locus:2053908	396	AT2G17500 [Arabidopsis thalian	0.751	0.527	0.588	7.2e-68
TAIR|locus:2011731	390	AT1G76520 "AT1G76520" [Arabido	0.654	0.466	0.455	3.9e-44
TAIR|locus:2011746	415	AT1G76530 "AT1G76530" [Arabido	0.737	0.493	0.387	2.1e-38
TAIR|locus:2185123	431	AT5G01990 "AT5G01990" [Arabido	0.672	0.433	0.353	6e-32
TAIR|locus:2026366	457	AT1G71090 "AT1G71090" [Arabido	0.647	0.393	0.347	4.9e-30
SGD|S000000491	427	YBR287W "Protein of unknown fu	0.557	0.362	0.271	4e-07
ASPGD|ASPL0000057212	584	AN0930 [Emericella nidulans (t	0.823	0.392	0.227	2.5e-06
SGD|S000005039	642	YNL095C "Putative protein of u	0.755	0.327	0.242	0.0002
POMBASE|SPAC5D6.04	452	SPAC5D6.04 "auxin family trans	0.586	0.360	0.216	0.00026

TAIR|locus:2156847 AT5G65980 "AT5G65980" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 139/205 (67%), Positives = 171/205 (83%)

Query:     1 MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
             MGF    EVASMPIVQVLLISVLGA +AT Y +LL+AD RRS+NK+VF VFTP +MFA+L
Sbjct:     1 MGFLELLEVASMPIVQVLLISVLGAFLATDYCSLLSADTRRSVNKLVFVVFTPCIMFANL 60

Query:    61 AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
             A+TVTL++IISWWFMP+NV +TFL+GGILGW+VVKLL PKP L GL+IATCASGN+GNL+
Sbjct:    61 AETVTLQDIISWWFMPINVGITFLVGGILGWLVVKLLNPKPQLHGLIIATCASGNMGNLM 120

Query:   121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
             LI+VPAIC E+GSPFGNR VC S+GLSYASFSMALGGF+IW+YSYQL++ S+ +++AL  
Sbjct:   121 LILVPAICDEEGSPFGNRSVCRSIGLSYASFSMALGGFYIWTYSYQLVRSSATQFRALEA 180

Query:   181 AAEPEEVPKEVNKDFDANAQTQLLR 205
             A     + K  NKD D++    LL+
Sbjct:   181 AG----LVKSPNKDIDSDPHALLLK 201

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2053908 AT2G17500 [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 126/214 (58%), Positives = 174/214 (81%)

Query:     1 MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASL 60
             MGFW+  EVASMP++QVL +S++GA MA+    L   +AR S+NK+VF +F P+LMFA+L
Sbjct:     1 MGFWSLLEVASMPVIQVLFMSLVGAFMASDRCKLFPVEARNSMNKVVFVLFAPALMFANL 60

Query:    61 AKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLL 120
             A+TVTLE+IISWWFMPVN+ +TFLIGG+LGW+VVK+L+P P+LEGL++ATC++GN+GNL 
Sbjct:    61 AQTVTLEDIISWWFMPVNMGLTFLIGGLLGWLVVKILKPPPYLEGLIVATCSAGNMGNLP 120

Query:   121 LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ 180
             +I+VPAIC E  SPFGNR VC +VGLSYASFSMALGGF+IW+Y+++LIK S+++ +A+  
Sbjct:   121 IILVPAICDEDKSPFGNRSVCRTVGLSYASFSMALGGFYIWTYTFRLIKGSAMKVQAIE- 179

Query:   181 AAEPEEVP-KEVNKDFDANAQTQLLRGTTDDQED 213
               E E++  K  N D +A+ +T LL G  +D+E+
Sbjct:   180 --ESEKIAIKSSNSDLEADHKTHLL-GAPEDKEN 210

GO:0009507 "chloroplast" evidence=ISM

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2011731 AT1G76520 "AT1G76520" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 87/191 (45%), Positives = 128/191 (67%)

Query:     7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTL 66
             F  +S P+V++LLI+ +G  MA    NLL  DAR+ LN +VF VF+PSL+ + LA +VT 
Sbjct:     8 FITSSKPVVEILLITSVGFYMALDGVNLLGHDARKYLNNIVFYVFSPSLIGSRLADSVTY 67

Query:    67 EEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPA 126
             E ++  WFMPVNV +TF+IG +LGWIV+ + +P  HL GL++  CA+GNLGN+ LII+PA
Sbjct:    68 ESLVKMWFMPVNVLLTFIIGSLLGWIVIVITKPPSHLRGLILGCCAAGNLGNMPLIIIPA 127

Query:   127 ICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEE 186
             +C E+G PFG+ + C   G+ Y + SMA+G  +IW+Y Y L++        L+ +  P E
Sbjct:   128 VCKEKGGPFGDPESCQKYGMGYVALSMAMGSIYIWTYVYNLMR-------VLSNS--PVE 178

Query:   187 VPKEVNKDFDA 197
              P  V  ++D+
Sbjct:   179 TPPSVESNYDS 189

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015824 "proline transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2011746 AT1G76530 "AT1G76530" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 84/217 (38%), Positives = 128/217 (58%)

Query:     7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTL 66
             F  +S P+V+ LLI+ +G  +A    NLL  DAR+ LN +VF VF+PSL+ + LA +VT 
Sbjct:     7 FIASSKPVVETLLITSVGFYLALDTVNLLGHDARKHLNNIVFYVFSPSLIGSRLADSVTY 66

Query:    67 EEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPA 126
             E ++  WFMPVNV +TF+IG +LGWIV+ + +P   L GL+I+ CASGNLG + LII+PA
Sbjct:    67 ESLVKMWFMPVNVLLTFMIGSLLGWIVIVITKPPSQLRGLIISCCASGNLGTMPLIIIPA 126

Query:   127 ICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQ----------LIKQSSVRYK 176
             IC E+G PFG+ + C   G+ Y + SM    FFI  Y +           L+    +   
Sbjct:   127 ICKEKGGPFGDSESCEKYGMGYVTLSMT--AFFISVYKHDTNWYVSGGNGLLMDLYINLM 184

Query:   177 ALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQED 213
              +   +  E     +  ++D + + QL+    +++E+
Sbjct:   185 RVLSNSPVETHTHSIESNYDDSCKVQLISSKEEEKEE 221

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2185123 AT5G01990 "AT5G01990" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 71/201 (35%), Positives = 121/201 (60%)

Query:     8 EVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLE 67
             ++A MPI +V  +  LG LMA++Y N+L    R+ LN +VF++  P L+F+ L + VTL+
Sbjct:    29 KIAVMPIAKVFTMCFLGLLMASKYVNILPPSGRKLLNGLVFSLLLPCLIFSQLGQAVTLQ 88

Query:    68 EIISWWFMPVNVAMTFLIGGILGWIVVKLLRPK-PHLEGLVIATCASGNLGNLLLIIVPA 126
             +++ WWF+PVNV +  + G I+G+IV  ++RP  P+ +  +I     GN+GN+ L+++ A
Sbjct:    89 KMLQWWFIPVNVVLGTISGSIIGFIVASIVRPPYPYFKFTIIQI-GVGNIGNVPLVLLAA 147

Query:   127 ICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI---------KQSSVRYKA 177
             +C +  +PFG+ + CS  G +Y SF   +G   +++Y YQ+          ++ ++  K 
Sbjct:   148 LCRDTSNPFGDSEKCSIDGTAYISFGQWVGAIILYTYVYQMFAPPPEGFDAEEENLALKT 207

Query:   178 LAQAAEPEEVP---KEVNKDF 195
             L   A PE+VP   +   KDF
Sbjct:   208 LPVDAAPEQVPLLTQNFPKDF 228

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2026366 AT1G71090 "AT1G71090" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 64/184 (34%), Positives = 112/184 (60%)

Query:    12 MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIIS 71
             +P+++++ ++V+G L+A     L+     R L+K+VF +F P L+F  L +++TL+ I+ 
Sbjct:    21 VPLLKLICLTVIGLLLAHPKTQLVPRATFRLLSKLVFALFLPCLIFTELGESITLDNIVQ 80

Query:    72 WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQ 131
             WWF+PVNV ++ ++G ++G++VV + RP P      I   A GN GNLLL IV ++CH +
Sbjct:    81 WWFIPVNVLLSAVVGSLIGYLVVLICRPPPEFNRFTIVMTAFGNTGNLLLAIVSSVCHTK 140

Query:   132 GSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQ-AAEPEEVPKE 190
              +PFG    C+S G+SY SF+  +    +++  Y +++     Y+ + +   E EE+  E
Sbjct:   141 TNPFGPN--CNSRGVSYVSFAQWVAVILVYTVVYHMMEPPLEYYEVVEEEGVEIEEINVE 198

Query:   191 VNKD 194
              N D
Sbjct:   199 -NHD 201

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

SGD|S000000491 YBR287W "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 141 (54.7 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 45/166 (27%), Positives = 83/166 (50%)

Query:    14 IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW 73
             ++QV++I++ G   A+    LL   +++ ++ +   +FTP L+F+ LAK++++ +I    
Sbjct:    18 VLQVVIIALAGFWSASS--GLLPKQSQKIISLLNVDLFTPCLIFSKLAKSLSMAKIFEIA 75

Query:    74 FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL-------LLIIVPA 126
              +P+   +T  I  I G I+ ++L         V+A    GN  +L       L   +P 
Sbjct:    76 IIPIFFGLTTGISFISGKIMSRILDLDKDETNFVVANSVFGNSNSLPVSLTLSLAYTLPN 135

Query:   127 ICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY-QLIKQS 171
             +  +Q  P  NRD  +S G+ Y      +G    WS+ Y +L+K S
Sbjct:   136 LTWDQ-IPNDNRDNVASRGILYLLIFQQIGQMLRWSWGYNKLMKWS 180

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ASPGD|ASPL0000057212 AN0930 [Emericella nidulans (taxid:162425)]

 Score = 136 (52.9 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 56/246 (22%), Positives = 104/246 (42%)

Query:    14 IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW 73
             +++V+ +S+ G + A     +  ADA++ +  +   +FTP L+F  L   +T E++    
Sbjct:    58 VLEVVCVSLPGYIAARV--GMFDADAQKFVANLNVALFTPCLIFTKLGSQLTAEKLTDLA 115

Query:    74 FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAIC----- 128
              +P+   +   +     ++V +  R K      V A    GN  +L + +V ++      
Sbjct:   116 IIPLIFIVQTAVSYSCAFVVSRCFRLKKRPSNFVAAMAVFGNSNSLPISLVISLSQTLNG 175

Query:   129 -HEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQAAEPEEV 187
              H    P  N D  ++ G+ Y      LG    WS+ Y+++     RY    +    E V
Sbjct:   176 LHWDRIPNDNDDEVAARGILYLLIFQQLGQLVRWSWGYRVLLAPKERYIEEGERDNGETV 235

Query:   188 PKEVNKDFDANAQT-----QLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTR 242
               +  + +  N +       L+R  T D  D S   A T S+ D +      +A+ + TR
Sbjct:   236 VAQGRERYTDNPEQVDPDEPLIR--TRDSSDGSTEQA-TGSNDDSDV-FHSGEATPVNTR 291

Query:   243 KESFWK 248
               S+ K
Sbjct:   292 SYSYTK 297

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

SGD|S000005039 YNL095C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
 Identities = 56/231 (24%), Positives = 106/231 (45%)

Query:     9 VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEE 68
             V+  PI+++ LI  +G LMA     +LT +A R ++ +V TV  PSL F  +   +  ++
Sbjct:    12 VSVKPIIKIYLIIGVGFLMAKM--GILTVEATRIISDIVLTVLLPSLSFNKIVANIEDKD 69

Query:    69 IISWWFMPVNVAMTFLIGGILGWIVVKLLRPKP-HLEGLVIATCASGNLGNLLLIIVPAI 127
             I S   + ++  + F  G    + VV+L  P P    G ++A     N+ +L +  + ++
Sbjct:    70 IKSVGIICLSALLIFGSGFFFAY-VVRLFLPVPKQWYGGILAGGMFPNISDLPIAYLQSM 128

Query:   128 CHEQGSPF----GNRDVCSSVGLSYASFSMA---LGGFFIWSYSYQLIK-QSSVRYKALA 179
               +QG  F    GN+ V + + +    F +    LGGF +    ++    +S+VR     
Sbjct:   129 --DQGLVFSEEEGNKGVANVI-IFLTMFLICIFNLGGFRLIESDFEYNDDESAVRVSETT 185

Query:   180 QAAEPEEVPKEVNKD----FDANAQTQLLRGTTDDQEDVSVLVASTKSSSD 226
             +  +P       N D    F +N Q QL       ++ ++  + +   ++D
Sbjct:   186 KT-QPAVSANTTNTDTSERFFSNEQ-QLFNNKYTARDSLTEAIGTKGENAD 234

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA;ISS

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

POMBASE|SPAC5D6.04 SPAC5D6.04 "auxin family transmembrane transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 117 (46.2 bits), Expect = 0.00026, P = 0.00026
 Identities = 37/171 (21%), Positives = 73/171 (42%)

Query:     4 WTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKT 63
             W+         ++V++I++ G ++A +    L  DA++ ++ +    FTP L+F  +   
Sbjct:    13 WSLLRPIIESDLEVIVIALGGYVLAKK--GFLPRDAQKVISSLNVYFFTPCLVFEKVGNG 70

Query:    64 VTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLII 123
             + L+ +I    +PV   +      ++ +++ KL R  P       A     N  +L L +
Sbjct:    71 LNLKMLIDLSLLPVFYVIISAASILISFLLAKLFRLTPRQRNFATACITFQNSNSLPLAL 130

Query:   124 VPAICHEQGS------PFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 168
             V ++            P    D  +S G+ Y      LG    WSY Y+++
Sbjct:   131 VSSLATTVKDLLWDKIPDDTPDKVASRGIMYLLIFSQLGQALRWSYGYRIL 181


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.134   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      278       259   0.00088  114 3  11 22  0.41    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  195 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.64u 0.10s 21.74t   Elapsed:  00:00:01
  Total cpu time:  21.64u 0.10s 21.74t   Elapsed:  00:00:01
  Start:  Fri May 10 18:10:07 2013   End:  Fri May 10 18:10:08 2013

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016021 "integral to membrane" evidence=ISM

GO:0022857 "transmembrane transporter activity" evidence=ISM

GO:0055085 "transmembrane transport" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V000390 hypothetical protein (397 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
pfam03547	321	pfam03547, Mem_trans, Membrane transport protein	2e-38
COG0679	311	COG0679, COG0679, Predicted permeases [General fun	1e-11

>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein

 Score =  136 bits (345), Expect = 2e-38
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 15/173 (8%)

Query: 9   VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEE 68
                ++ V LI +LG L       +L  D    +NK+V     P L+F+S++  VTLE 
Sbjct: 1   TVVEAVLPVFLIMLLGYLAGK--SGILPPDQASGINKLVVYFALPLLIFSSISTNVTLEM 58

Query: 69  IISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAIC 128
           I+ +W +PV V +   I  I+G++V K+ +      G++I T A  N G L L ++ A+ 
Sbjct: 59  IVDFWLIPVLVVLIVAISLIIGFLVSKIFKLPLEWRGVLILTSAFPNTGFLGLPLLLALY 118

Query: 129 HEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQA 181
            E              GLSYA  S+ LG   IW+  Y LI+    +     ++
Sbjct: 119 GE-------------EGLSYAIISVVLGVIIIWTLGYFLIESRGAKRDKSEES 158

This family includes auxin efflux carrier proteins and other transporter proteins from all domains of life. Length = 321

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only]

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 22/181 (12%)

Query: 3   FWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAK 62
               FE     ++ + LI +LG L+    + +L  +A R L+++V  V  P+L+F S+A 
Sbjct: 2   MMIVFE----VVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIAT 55

Query: 63  TVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCAS-GNLGNLLL 121
              L  +     +  ++  T L    L  ++ + L      E ++ A  ++  N+G L L
Sbjct: 56  A-DLSGLADLGLIVASLVATLLA-FFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGL 113

Query: 122 IIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVRYKALAQA 181
            +  ++       FG +      GL+YA   + +G F +++    L+ +S         +
Sbjct: 114 PVALSL-------FGEK------GLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLLS 160

Query: 182 A 182
            
Sbjct: 161 V 161

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
KOG2722	408	consensus Predicted membrane protein [Function unk	100.0
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	99.97
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	99.86
COG0679	311	Predicted permeases [General function prediction o	99.83
PRK09903	314	putative transporter YfdV; Provisional	99.81
TIGR00841	286	bass bile acid transporter. Functionally character	96.78
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	94.17
COG0385	319	Predicted Na+-dependent transporter [General funct	93.23
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	90.82
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	88.96
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	88.6

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.3e-58  Score=431.35  Aligned_cols=257  Identities=45%  Similarity=0.831  Sum_probs=220.3

Q ss_pred             CChHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHH
Q 023742            1 MGFWTFFEVAS--MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN   78 (278)
Q Consensus         1 m~~~~l~~~a~--~~vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~   78 (278)
                      |+|++++-.+.  +|++++++++.+||++|+++.|++++|+||.+|+++||+|+|||||+++++++|++++.+|||||+|
T Consensus         2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn   81 (408)
T KOG2722|consen    2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN   81 (408)
T ss_pred             chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence            78999998888  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhhH
Q 023742           79 VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF  158 (278)
Q Consensus        79 ~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~i  158 (278)
                      +.+++++|.++||++.|++|+|++.|++.++||+|||+||||+.+++|+|+++++|||++|.|.++|+.|++++|+++++
T Consensus        82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i  161 (408)
T KOG2722|consen   82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI  161 (408)
T ss_pred             HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhcch-hhHHhhhhcCCCCCCCccccccccchhhhhcccCCCCCCcchhhhhccCCCCCCCcccccccccc
Q 023742          159 FIWSYSYQLIKQSS-VRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQAS  237 (278)
Q Consensus       159 l~wT~g~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (278)
                      +.|||+|+++.+++ ++++.+++. ..|.      ..++.+  ..+.++++|+++|++++++ +++   .        +.
T Consensus       162 l~wty~Y~~~~~p~~~~~~~~~~~-~Ve~------~~~~~~--~~s~e~~~~~~~k~~ll~~-~en---~--------~~  220 (408)
T KOG2722|consen  162 LRWTYVYRMLLPPNLELMSALKES-PVEA------LLESVP--QPSVESDEDSTCKTLLLAS-KEN---R--------NN  220 (408)
T ss_pred             EEEEEEeeeecCCchhhhhcCChh-hhhh------hhhccC--CCCcccccccccccccccc-ccc---C--------CC
Confidence            99999999887775 333333322 2111      110111  1345566666778777741 111   0        11


Q ss_pred             chhhhhhhhhhhHHHHHHHH-HHHhcChhHHHHHHHHhhcCC
Q 023742          238 HLQTRKESFWKRSLEFLHQL-LEELLAPPTLAAVSFFSLTMS  278 (278)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~-~~~~~~P~ti~~i~g~~iG~~  278 (278)
                      +...+++++++|.+...+|. +|++|||||+|+|+|++||++
T Consensus       221 ~~~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai  262 (408)
T KOG2722|consen  221 QVVGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAI  262 (408)
T ss_pred             ceeeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcc
Confidence            22235677888999999998 999999999999999999985

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=99.97  E-value=4.7e-31  Score=250.59  Aligned_cols=153  Identities=34%  Similarity=0.663  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742           10 ASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGIL   89 (278)
Q Consensus        10 a~~~vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~l   89 (278)
                      ++++++++++++++||+++  |+|++++++.+.+|++++++++|||+|++++++.+.+++.++|++++...+.+++++++
T Consensus         2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (385)
T PF03547_consen    2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL   79 (385)
T ss_pred             cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999  99999999999999999999999999999999888999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhhHHHHhhhhhhhh
Q 023742           90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIK  169 (278)
Q Consensus        90 g~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~il~wT~g~~ll~  169 (278)
                      +|++.|++|.++++++.+..+|+++|++++|+|++.++       ||+      +|+.|++++.++++++.|++|+.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l-------~g~------~~~~~~~~~~~~~~i~~~~~~~~l~~  146 (385)
T PF03547_consen   80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQAL-------FGE------RGVAYAIIFDVVNNIILWSLGYFLLE  146 (385)
T ss_pred             HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHH-------hcc------hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999       663      89999999999999999999999999


Q ss_pred             cchhhHHh
Q 023742          170 QSSVRYKA  177 (278)
Q Consensus       170 ~~~~~~~~  177 (278)
                      ..+++.++
T Consensus       147 ~~~~~~~~  154 (385)
T PF03547_consen  147 SRSEKEDK  154 (385)
T ss_pred             cccccccc
Confidence            87765543

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=99.86  E-value=1.4e-20  Score=175.93  Aligned_cols=147  Identities=18%  Similarity=0.201  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHH-HHHHHHHHHHHHHHHHH
Q 023742            7 FEVASMPIVQVLLISVLGALM-ATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLE-EIISWWFMPVNVAMTFL   84 (278)
Q Consensus         7 ~~~a~~~vl~Vflii~vG~~l-a~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~-~l~~~w~~~v~~~l~~l   84 (278)
                      ++..+..++++++++++||++ +  |+|+++++..+.+|++++|+++||++|++++++ +.+ .....+...+...+.++
T Consensus         3 ~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (321)
T TIGR00946         3 TYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTT-LADILQKSQSPVVLFLWGAFS   79 (321)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            566779999999999999999 8  999999999999999999999999999999986 222 23333344444556677


Q ss_pred             HHHHHHHHHHH-HhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhh---HHHHHHHHHHhhHHH
Q 023742           85 IGGILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVG---LSYASFSMALGGFFI  160 (278)
Q Consensus        85 ig~~lg~lv~r-i~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~G---l~Y~s~~~~v~~il~  160 (278)
                      ..++++|.+.| .+|.++++++.+..+++++|+||+|+|++.++       ||+      +|   +.|+..+...+.++.
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G~------~~~~~~~~~~~~~~~~~~~~  146 (321)
T TIGR00946        80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FGE------EGAKILIAALFIDTGAVLMT  146 (321)
T ss_pred             HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hcc------cchhhhHHHHHHHhccchhH
Confidence            77889999998 77888889999999999999999999999999       774      44   788889999999999


Q ss_pred             Hhhhhhhhh
Q 023742          161 WSYSYQLIK  169 (278)
Q Consensus       161 wT~g~~ll~  169 (278)
                      ||+|+.+.+
T Consensus       147 ~~~~~~~~~  155 (321)
T TIGR00946       147 IALGLFLVS  155 (321)
T ss_pred             HHHHHHHhc
Confidence            999987654

>COG0679 Predicted permeases [General function prediction only]

Probab=99.83  E-value=8.6e-20  Score=170.75  Aligned_cols=152  Identities=23%  Similarity=0.370  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 023742            7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG   86 (278)
Q Consensus         7 ~~~a~~~vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig   86 (278)
                      +...+.+++|+++++++||+++  |.+.++++..+.+|++++|+++|||+|++++++. .+...++..+...... .++.
T Consensus         2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~-~~~~~~~~~~~~~~~~-~~~~   77 (311)
T COG0679           2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATAD-LSGLADLGLIVASLVA-TLLA   77 (311)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCC-cchhhhHHHHHHHHHH-HHHH
Confidence            3567789999999999999999  9999999999999999999999999999999983 3333455555544444 4444


Q ss_pred             HHHHHHHHH-HhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhhHHHHhhhh
Q 023742           87 GILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY  165 (278)
Q Consensus        87 ~~lg~lv~r-i~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~il~wT~g~  165 (278)
                      .++++++.| .++.++++++.+..+.+|+|+||+|+|+...+       ||+      +|++|+++++.++++.+|++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G~------~gl~~~~i~~~~~~~~~~~~g~  144 (311)
T COG0679          78 FFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FGE------KGLAYAVIFLIIGLFLMFTLGV  144 (311)
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cCc------chHHHHHHHHHHHHHHHHHHHH
Confidence            444555554 56777777889999999999999999999998       884      8999999999999999999999


Q ss_pred             hhhhcchhhH
Q 023742          166 QLIKQSSVRY  175 (278)
Q Consensus       166 ~ll~~~~~~~  175 (278)
                      .++...++..
T Consensus       145 ~~l~~~~~~~  154 (311)
T COG0679         145 ILLARSGGGT  154 (311)
T ss_pred             HHHHHhcCCc
Confidence            9887776544

>PRK09903 putative transporter YfdV; Provisional

Probab=99.81  E-value=8.1e-19  Score=163.98  Aligned_cols=149  Identities=17%  Similarity=0.257  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 023742            9 VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGI   88 (278)
Q Consensus         9 ~a~~~vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~   88 (278)
                      ..+..++|+|+++++||+++  |++++++++.|.+|++++|+++||++|++++++ +.++...-|...+...+.++++++
T Consensus         4 ~~~~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   80 (314)
T PRK09903          4 FFIGDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFF   80 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHH
Confidence            44577899999999999999  999999999999999999999999999999986 666665334445666777788888


Q ss_pred             HHHHHHH-HhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhhHHHHhhhhhh
Q 023742           89 LGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQL  167 (278)
Q Consensus        89 lg~lv~r-i~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~il~wT~g~~l  167 (278)
                      ++|++.| ..|.++++++.....++++|+||+|+|++.++       ||++.   ..|+.|+..+ .+++++.|++|..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~---~~~~~~a~~~-~~~~~~~~~~g~~~  149 (314)
T PRK09903         81 FSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSV---STGLVVAIIS-IIVNAITIPIGLYL  149 (314)
T ss_pred             HHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchh---hhhhHHHHHH-HHHHHHHHHHHHHH
Confidence            8888876 45767677788888999999999999999999       77521   0256666654 46899999999998


Q ss_pred             hhcc
Q 023742          168 IKQS  171 (278)
Q Consensus       168 l~~~  171 (278)
                      ++..
T Consensus       150 ~~~~  153 (314)
T PRK09903        150 LNPS  153 (314)
T ss_pred             Hccc
Confidence            8753

>TIGR00841 bass bile acid transporter

Probab=96.78  E-value=0.031  Score=51.90  Aligned_cols=80  Identities=14%  Similarity=0.033  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHH
Q 023742           72 WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASF  151 (278)
Q Consensus        72 ~w~~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~  151 (278)
                      .|.+.+..++..++++++||+++|.+|.++++++.....++..|++ +++++....       |+. + -..-...|...
T Consensus       194 ~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~~-~-~a~~~~~~~v~  263 (286)
T TIGR00841       194 GPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FSP-E-VAVPSAIFPLI  263 (286)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cCh-H-HHHHHHHHHHH
Confidence            3445556677888999999999999999988888888999999999 888888776       552 1 12224456666


Q ss_pred             HHHHhhHHHH
Q 023742          152 SMALGGFFIW  161 (278)
Q Consensus       152 ~~~v~~il~w  161 (278)
                      ++..+.++.+
T Consensus       264 ~~~~~~~~a~  273 (286)
T TIGR00841       264 YALFQLAFAL  273 (286)
T ss_pred             HHHHHHHHHH
Confidence            6666666554

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>TIGR00832 acr3 arsenical-resistance protein

Probab=94.17  E-value=0.65  Score=44.12  Aligned_cols=50  Identities=20%  Similarity=0.201  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhh
Q 023742           77 VNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI  127 (278)
Q Consensus        77 v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~al  127 (278)
                      ...++..++++.+||.++|.+|.+++++.....+++..|.+ +++++..+.
T Consensus       250 ~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~-lai~lA~~~  299 (328)
T TIGR00832       250 IPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFE-LAIAVAISL  299 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHH-HHHHHHHHh
Confidence            34567788999999999999999999999999999998875 556666555

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=93.23  E-value=1.9  Score=41.06  Aligned_cols=76  Identities=21%  Similarity=0.176  Sum_probs=53.6

Q ss_pred             HHHHhHHHHHHHhcccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHh
Q 023742           48 FTVFTPSLMFASLAKTVTLEEIISWW-FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPA  126 (278)
Q Consensus        48 f~VflP~LIFs~la~~vt~~~l~~~w-~~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~a  126 (278)
                      =...+=+.++..++..  .++....- .+.+.+.+.-.+++.+||..+|.++.+++++..+..+++..|.|. +.++..+
T Consensus       199 s~~~illIv~~~~s~~--~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~l-g~alA~~  275 (319)
T COG0385         199 SVLSILLIVYAAFSAA--VENGIWSGLLIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGL-GAALAAA  275 (319)
T ss_pred             hHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHH-HHHHHHh
Confidence            3344555566666554  22332222 344566778889999999999999999999999999999999874 5555554

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=90.82  E-value=3  Score=39.31  Aligned_cols=106  Identities=16%  Similarity=0.224  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHhhccCCCChhh--HHHHHHHHHHHHhHHHHHHHhcccCC---HHH--HHHHHHHHHHHHHHHHHHHHH
Q 023742           17 VLLISVLGALMATQYWNLLTADA--RRSLNKMVFTVFTPSLMFASLAKTVT---LEE--IISWWFMPVNVAMTFLIGGIL   89 (278)
Q Consensus        17 Vflii~vG~~la~~r~~iL~~~~--~k~Lsklvf~VflP~LIFs~la~~vt---~~~--l~~~w~~~v~~~l~~lig~~l   89 (278)
                      +++=..+|-+++  |.  +++-.  .|..-+.+-...+-.++++++.+++.   .++  ......+....+....+++.+
T Consensus       167 vllP~~~Gq~~r--~~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  242 (313)
T PF13593_consen  167 VLLPLVLGQLLR--RW--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVL  242 (313)
T ss_pred             HHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            333345576666  22  22211  13334444556666777777655421   111  122223333445566666778


Q ss_pred             HHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhh
Q 023742           90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI  127 (278)
Q Consensus        90 g~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~al  127 (278)
                      +|...|.++.+++++....+| +...+.-+++|++..+
T Consensus       243 ~~~~~r~~~~~~~d~iA~~F~-gs~Ksl~~gvpl~~~l  279 (313)
T PF13593_consen  243 GWLAARLLGFSRPDRIAVLFC-GSQKSLALGVPLASIL  279 (313)
T ss_pred             HHHHHhhcCCChhhEEEEEEE-cCcCcchhHHHHHHHH
Confidence            999999999999888777654 4577788999999988

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=88.96  E-value=4.8  Score=38.82  Aligned_cols=101  Identities=14%  Similarity=0.206  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHhhccCCCChhhH---HHHHHHHHHHHhHHHHH-HHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 023742           17 VLLISVLGALMATQYWNLLTADAR---RSLNKMVFTVFTPSLMF-ASLAKTVTLEEIISWW--FMPVNVAMTFLIGGILG   90 (278)
Q Consensus        17 Vflii~vG~~la~~r~~iL~~~~~---k~Lsklvf~VflP~LIF-s~la~~vt~~~l~~~w--~~~v~~~l~~lig~~lg   90 (278)
                      ...++.+|.+++  ..|+++++..   +...|++.+.+++.+++ -.++.+ +++++.+..  ...+.++.+.+...+.+
T Consensus       207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t-~l~~L~~a~t~~~vviiv~~Vlg~ii~s  283 (347)
T TIGR00783       207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYI-DLDDLVAALSWQFVVICLSVVVAMILGG  283 (347)
T ss_pred             HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccC-CHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence            346777888888  9999997765   45555666666666665 456554 888888754  22333334444445567


Q ss_pred             HHHHHHhcCCCCchhHhhh--hhccCCcchhH
Q 023742           91 WIVVKLLRPKPHLEGLVIA--TCASGNLGNLL  120 (278)
Q Consensus        91 ~lv~ri~r~p~~~~~~~i~--~~~fgN~gnLp  120 (278)
                      +++.|+++.=+-+......  ++..|.+|++.
T Consensus       284 ~lvGKllG~YPiE~aItagLC~~~~GGtGDva  315 (347)
T TIGR00783       284 AFLGKLMGMYPVESAITAGLCNSGMGGTGDVA  315 (347)
T ss_pred             HHHHHHhCCChHHHHHHHhhhccCCCCCCcee
Confidence            7999999866555554433  23345555554

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=88.60  E-value=15  Score=35.71  Aligned_cols=104  Identities=17%  Similarity=0.170  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHH----HHHHHHHHHHHHHH
Q 023742           13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF----MPVNVAMTFLIGGI   88 (278)
Q Consensus        13 ~vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~----~~v~~~l~~lig~~   88 (278)
                      -+-+++++..+|.+++  ..|+++.+....+.+.+...++|..++--+-+. |++++.+...    +.+...+.+++|..
T Consensus        24 ~l~~~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~-Dlr~i~~~g~~~l~~F~~~~~g~viG~~  100 (378)
T PF05684_consen   24 YLPGAVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSA-DLRRILRLGGRLLLAFLIGAVGTVIGAV  100 (378)
T ss_pred             hcCHHHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHc-cHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            4445678889999999  999995445567788888888888888777665 6666654333    23334456666666


Q ss_pred             HHHHHHHHhcCCCCchhHhh-hhhccCCcchh
Q 023742           89 LGWIVVKLLRPKPHLEGLVI-ATCASGNLGNL  119 (278)
Q Consensus        89 lg~lv~ri~r~p~~~~~~~i-~~~~fgN~gnL  119 (278)
                      +++.+.+..--|+.++..-. ..+-.|-+.|+
T Consensus       101 va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~  132 (378)
T PF05684_consen  101 VAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNF  132 (378)
T ss_pred             HHHHHHhhcccchHHHHHHHHHhcccCchhHH
Confidence            66665554312333443322 23334444554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	278
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 22/101 (21%)

Query: 4   WTFFEVASMP--IVQV--LLISVLGALM----AT-QYWNLLTADARRSLNKMVFTVFTPS 54
           +       +P  ++      +S++   +    AT   W  +  D   ++ +    V  P+
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 55  LM---FASLA--------KTVTLEEIISWWFMPVNVAMTFL 84
                F  L+         T+ L   + W+ +  +  M  +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLS--LIWFDVIKSDVMVVV 408

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	96.69

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=96.69  E-value=0.056  Score=49.93  Aligned_cols=79  Identities=18%  Similarity=0.191  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHH
Q 023742           75 MPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMA  154 (278)
Q Consensus        75 ~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~  154 (278)
                      +.+..++..++++.+||.++|.+|.+++++......|+..|++ +++++....       ||++....--...|....+.
T Consensus       230 v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~-lai~lA~~~-------F~~~p~~alp~~iy~~~q~i  301 (332)
T 3zux_A          230 IFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSG-LAAALAAAH-------FAAAPVVAVPGALFSVWHNI  301 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHH-HHHHHHHHH-------STTCGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHH-HHHHHHHHH-------cCCCchHHHHHHHHHHHHHH
Confidence            3344567778899999999999999999999988889999994 999998877       65322222233445555555


Q ss_pred             HhhHHHH
Q 023742          155 LGGFFIW  161 (278)
Q Consensus       155 v~~il~w  161 (278)
                      .+.++.+
T Consensus       302 ~~~~la~  308 (332)
T 3zux_A          302 SGSLLAT  308 (332)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00